From e2e658b17bc9c50e9c0d02abe9e280d3c88d5fad Mon Sep 17 00:00:00 2001 From: dosumis Date: Fri, 6 Sep 2019 11:47:06 +0100 Subject: [PATCH 01/13] Started refactoring import statements and tweaking make. More work needed. --- src/ontology/Makefile | 6 +-- src/ontology/catalog-v001.xml | 6 +-- src/ontology/pato-edit.obo | 4 +- src/ontology/pato_ext.owl | 81 +++++++++++++++++++++++++---------- 4 files changed, 67 insertions(+), 30 deletions(-) diff --git a/src/ontology/Makefile b/src/ontology/Makefile index 0a2eebe8..58cb4deb 100644 --- a/src/ontology/Makefile +++ b/src/ontology/Makefile @@ -1,7 +1,7 @@ OBO=http://purl.obolibrary.org/obo USECAT= --catalog-xml catalog-v001.xml -all: all_imports test_ext release +all: all_imports release ARTEFACTS = pato.obo pato.owl pato.json pato_ext.owl pato_ext.json pato-base.obo pato-base.owl pato-base.json release: $(ARTEFACTS) copy-release @@ -45,8 +45,8 @@ pato-base.json: pato-base.owl pato-base.obo: pato-base.owl robot convert -i $< -o $@ -test_ext: - robot reason -r elk -i pato_ext.owl +#test_ext: +# robot reason -r elk -i pato_ext.owl # ---------------------------------------- # Regenerate imports diff --git a/src/ontology/catalog-v001.xml b/src/ontology/catalog-v001.xml index 11728f4a..dfd4cbab 100644 --- a/src/ontology/catalog-v001.xml +++ b/src/ontology/catalog-v001.xml @@ -1,5 +1,6 @@ + @@ -12,8 +13,5 @@ - - - - + diff --git a/src/ontology/pato-edit.obo b/src/ontology/pato-edit.obo index a16c2c22..aee7fff4 100644 --- a/src/ontology/pato-edit.obo +++ b/src/ontology/pato-edit.obo @@ -13,6 +13,9 @@ subsetdef: relational_slim "Relational slim: types of quality that require an ad subsetdef: scalar_slim "Scalar slim" subsetdef: value_slim "Value slim" default-namespace: quality +import: http://purl.obolibrary.org/obo/pato/pato_ext.owl +import: http://purl.obolibrary.org/obo/pato/imports/go_import.owl +import: http://purl.obolibrary.org/obo/pato/imports/ro_import.owl ontology: pato [Term] @@ -19926,7 +19929,6 @@ def: "A quality inhering in a bearer by virtue of the degree to which the bearer subset: attribute_slim is_a: PATO:0000140 ! position - [Term] id: PATO:0015008 name: distensibility diff --git a/src/ontology/pato_ext.owl b/src/ontology/pato_ext.owl index dd6428b9..f701b5e4 100644 --- a/src/ontology/pato_ext.owl +++ b/src/ontology/pato_ext.owl @@ -1,3 +1,4 @@ +Prefix(:=) Prefix(owl:=) Prefix(rdf:=) Prefix(xml:=) @@ -6,34 +7,70 @@ Prefix(rdfs:=) Ontology( - -Import() -Import() -Import() -Import() -Import() -Import() Annotation(rdfs:comment "Axioms extending PATO ") +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) +Declaration(ObjectProperty()) +Declaration(ObjectProperty()) +Declaration(ObjectProperty()) +Declaration(ObjectProperty()) +Declaration(ObjectProperty()) + + +############################ +# Classes +############################ + +# Class: () + DisjointClasses( ) + +# Class: () + DisjointClasses( ) -EquivalentClasses(ObjectExactCardinality(2 ) ObjectSomeValuesFrom( )) -EquivalentClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))) -EquivalentClasses(ObjectMinCardinality(2 ) ObjectSomeValuesFrom( )) -EquivalentClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) -SubClassOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) -SubClassOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) -EquivalentClasses(ObjectMinCardinality(2 ) ObjectSomeValuesFrom( )) -SubClassOf(ObjectSomeValuesFrom( ) ) + + +EquivalentClasses(ObjectComplementOf(ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( )) +EquivalentClasses(ObjectSomeValuesFrom( ) ObjectExactCardinality(2 )) +EquivalentClasses(ObjectSomeValuesFrom( ) ObjectExactCardinality(1 )) +EquivalentClasses(ObjectSomeValuesFrom( ) ObjectMinCardinality(2 )) +EquivalentClasses(ObjectSomeValuesFrom( ) ObjectMinCardinality(2 )) EquivalentClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) -EquivalentClasses(ObjectMinCardinality(2 ) ObjectSomeValuesFrom( )) -DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) -SubClassOf(ObjectSomeValuesFrom( ) ) -EquivalentClasses(ObjectExactCardinality(1 ) ObjectSomeValuesFrom( )) -EquivalentClasses(ObjectSomeValuesFrom( ) ObjectComplementOf(ObjectSomeValuesFrom( ))) +EquivalentClasses(ObjectSomeValuesFrom( ) ObjectMinCardinality(2 )) +EquivalentClasses(ObjectSomeValuesFrom( ) ObjectExactCardinality(1 )) +SubClassOf(ObjectSomeValuesFrom( ) ) SubClassOf(ObjectSomeValuesFrom( ) ) -EquivalentClasses(ObjectExactCardinality(1 ) ObjectSomeValuesFrom( )) SubClassOf(ObjectSomeValuesFrom( ) ) -) +SubClassOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +SubClassOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +SubClassOf(ObjectSomeValuesFrom( ) ) +DisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )) +) \ No newline at end of file From 049f63c8e696df80a514d502930b51bce305d38e Mon Sep 17 00:00:00 2001 From: matentzn Date: Thu, 12 Sep 2019 15:57:20 +0100 Subject: [PATCH 02/13] pato ODK files --- src/ontology/build.sh | 2 ++ src/ontology/keeprelations.txt | 1 + src/ontology/ontologyterms.txt | 0 src/ontology/pato.Makefile | 5 +++ src/ontology/patterns.sh | 2 ++ src/ontology/prepare_release.sh | 2 ++ src/ontology/run.bat | 1 + src/ontology/run.sh | 2 +- src/ontology/test.sh | 2 ++ src/patterns/README.md | 0 src/patterns/definitions.owl | 11 +++++++ src/patterns/dosdp-patterns/external.txt | 1 + src/patterns/pattern.owl | 11 +++++++ src/sparql/README.md | 32 +++++++++++++++++++ src/sparql/basic-report.sparql | 12 +++++++ src/sparql/class-count-by-prefix.sparql | 10 ++++++ src/sparql/def-lacks-xref-violation.sparql | 12 +++++++ src/sparql/edges.sparql | 19 +++++++++++ .../equivalent-classes-violation.sparql | 14 ++++++++ src/sparql/inject-subset-declaration.ru | 9 ++++++ src/sparql/labels.sparql | 9 ++++++ src/sparql/nolabels-violation.sparql | 13 ++++++++ src/sparql/obsolete-violation.sparql | 24 ++++++++++++++ src/sparql/obsoletes.sparql | 14 ++++++++ .../owldef-self-reference-violation.sparql | 11 +++++++ src/sparql/owldef-violation.sparql | 9 ++++++ src/sparql/pato_terms.sparql | 9 ++++++ .../redundant-subClassOf-violation.sparql | 15 +++++++++ src/sparql/simple-seed.sparql | 12 +++++++ src/sparql/subsets-labeled.sparql | 14 ++++++++ src/sparql/synonyms.sparql | 26 +++++++++++++++ src/sparql/terms.sparql | 7 ++++ .../trailing-whitespace-violation.sparql | 11 +++++++ src/sparql/xref-syntax-violation.sparql | 13 ++++++++ src/sparql/xrefs.sparql | 8 +++++ 35 files changed, 342 insertions(+), 1 deletion(-) create mode 100644 src/ontology/build.sh create mode 100644 src/ontology/keeprelations.txt create mode 100644 src/ontology/ontologyterms.txt create mode 100644 src/ontology/pato.Makefile create mode 100644 src/ontology/patterns.sh create mode 100644 src/ontology/prepare_release.sh create mode 100644 src/ontology/run.bat mode change 100755 => 100644 src/ontology/run.sh create mode 100644 src/ontology/test.sh create mode 100644 src/patterns/README.md create mode 100644 src/patterns/definitions.owl create mode 100644 src/patterns/dosdp-patterns/external.txt create mode 100644 src/patterns/pattern.owl create mode 100644 src/sparql/README.md create mode 100644 src/sparql/basic-report.sparql create mode 100644 src/sparql/class-count-by-prefix.sparql create mode 100644 src/sparql/def-lacks-xref-violation.sparql create mode 100644 src/sparql/edges.sparql create mode 100644 src/sparql/equivalent-classes-violation.sparql create mode 100644 src/sparql/inject-subset-declaration.ru create mode 100644 src/sparql/labels.sparql create mode 100644 src/sparql/nolabels-violation.sparql create mode 100644 src/sparql/obsolete-violation.sparql create mode 100644 src/sparql/obsoletes.sparql create mode 100644 src/sparql/owldef-self-reference-violation.sparql create mode 100644 src/sparql/owldef-violation.sparql create mode 100644 src/sparql/pato_terms.sparql create mode 100644 src/sparql/redundant-subClassOf-violation.sparql create mode 100644 src/sparql/simple-seed.sparql create mode 100644 src/sparql/subsets-labeled.sparql create mode 100644 src/sparql/synonyms.sparql create mode 100644 src/sparql/terms.sparql create mode 100644 src/sparql/trailing-whitespace-violation.sparql create mode 100644 src/sparql/xref-syntax-violation.sparql create mode 100644 src/sparql/xrefs.sparql diff --git a/src/ontology/build.sh b/src/ontology/build.sh new file mode 100644 index 00000000..22add54c --- /dev/null +++ b/src/ontology/build.sh @@ -0,0 +1,2 @@ +#!/bin/sh +./run.sh make all diff --git a/src/ontology/keeprelations.txt b/src/ontology/keeprelations.txt new file mode 100644 index 00000000..f55fc521 --- /dev/null +++ b/src/ontology/keeprelations.txt @@ -0,0 +1 @@ +BFO:0000050 \ No newline at end of file diff --git a/src/ontology/ontologyterms.txt b/src/ontology/ontologyterms.txt new file mode 100644 index 00000000..e69de29b diff --git a/src/ontology/pato.Makefile b/src/ontology/pato.Makefile new file mode 100644 index 00000000..83584815 --- /dev/null +++ b/src/ontology/pato.Makefile @@ -0,0 +1,5 @@ +## Customize Makefile settings for pato +## +## If you need to customize your Makefile, make +## changes here rather than in the main Makefile + diff --git a/src/ontology/patterns.sh b/src/ontology/patterns.sh new file mode 100644 index 00000000..e2fb401b --- /dev/null +++ b/src/ontology/patterns.sh @@ -0,0 +1,2 @@ +#!/bin/sh +./run.sh make patterns diff --git a/src/ontology/prepare_release.sh b/src/ontology/prepare_release.sh new file mode 100644 index 00000000..6aefd945 --- /dev/null +++ b/src/ontology/prepare_release.sh @@ -0,0 +1,2 @@ +#!/bin/sh +./run.sh make prepare_release diff --git a/src/ontology/run.bat b/src/ontology/run.bat new file mode 100644 index 00000000..717ca499 --- /dev/null +++ b/src/ontology/run.bat @@ -0,0 +1 @@ +docker run -v %cd%\..\..\:/work -w /work/src/ontology --rm -ti obolibrary/odkfull %* diff --git a/src/ontology/run.sh b/src/ontology/run.sh old mode 100755 new mode 100644 index 603943ab..e9c85e83 --- a/src/ontology/run.sh +++ b/src/ontology/run.sh @@ -9,4 +9,4 @@ # we therefore map the whole repo (../..) to a docker volume. # # See README-editors.md for more details. -docker run -v $PWD/../../:/work -w /work/src/ontology -e ROBOT_JAVA_ARGS='' --rm -ti obolibrary/odkfull "$@" \ No newline at end of file +docker run -v $PWD/../../:/work -w /work/src/ontology -e ROBOT_JAVA_ARGS='-Xmx8G' --rm -ti obolibrary/odkfull "$@" \ No newline at end of file diff --git a/src/ontology/test.sh b/src/ontology/test.sh new file mode 100644 index 00000000..dfd54a7e --- /dev/null +++ b/src/ontology/test.sh @@ -0,0 +1,2 @@ +#!/bin/sh +./run.sh make test diff --git a/src/patterns/README.md b/src/patterns/README.md new file mode 100644 index 00000000..e69de29b diff --git a/src/patterns/definitions.owl b/src/patterns/definitions.owl new file mode 100644 index 00000000..11593cad --- /dev/null +++ b/src/patterns/definitions.owl @@ -0,0 +1,11 @@ +Prefix(:=) +Prefix(owl:=) +Prefix(rdf:=) +Prefix(xml:=) +Prefix(xsd:=) +Prefix(rdfs:=) + + +Ontology( + +) \ No newline at end of file diff --git a/src/patterns/dosdp-patterns/external.txt b/src/patterns/dosdp-patterns/external.txt new file mode 100644 index 00000000..09e32e08 --- /dev/null +++ b/src/patterns/dosdp-patterns/external.txt @@ -0,0 +1 @@ +http://purl.obolibrary.org/obo/upheno/patterns/abnormalAnatomicalEntity.yaml \ No newline at end of file diff --git a/src/patterns/pattern.owl b/src/patterns/pattern.owl new file mode 100644 index 00000000..b3cc09e3 --- /dev/null +++ b/src/patterns/pattern.owl @@ -0,0 +1,11 @@ +Prefix(:=) +Prefix(owl:=) +Prefix(rdf:=) +Prefix(xml:=) +Prefix(xsd:=) +Prefix(rdfs:=) + + +Ontology( + +) \ No newline at end of file diff --git a/src/sparql/README.md b/src/sparql/README.md new file mode 100644 index 00000000..3a137948 --- /dev/null +++ b/src/sparql/README.md @@ -0,0 +1,32 @@ +# Sparql checks + +[SPARQL](https://www.w3.org/TR/rdf-sparql-query/) is a W3C standard +query language for RDF. This directory contains useful SPARQL queries +for perfoming over the ontology. + +SPARQL can be executed on a triplestore or directly on any OWL +file. The queries here are all executed on either pato-edit.obo or +downstream products in the [ontology](../ontology/) folder. We use +`robot` as this allows easy execution over any Obo-format or OWL file. + +We break the queries into 3 categories: + +## Constraint Violation checks + +These are all named `*violation.sparql`. A subset of these are +configured to be executed via travis. If these return any results, +then the build will fail. + +Consult the individual sparql files to see the intent of the check + +## Construct queries + +These are named `construct*.sparql`, and always have the form `CONSTRUCT ...`. + +These are used to generate new OWL axioms that can be inserted back +into the ontology. + +## Reports + +The remaining SPARQL queries are for informative purposes. A subset +may be executed with each release. \ No newline at end of file diff --git a/src/sparql/basic-report.sparql b/src/sparql/basic-report.sparql new file mode 100644 index 00000000..cff97737 --- /dev/null +++ b/src/sparql/basic-report.sparql @@ -0,0 +1,12 @@ +prefix oio: +prefix def: +prefix owl: + +SELECT ?cls ?def (group_concat(?xref) as ?xrefs) WHERE +{ + ?cls a owl:Class . + OPTIONAL { ?cls oio:hasDbXref ?xref } . + OPTIONAL { ?cls def: ?def } . + FILTER (!isBlank(?cls)) +} +GROUP BY ?cls ?def diff --git a/src/sparql/class-count-by-prefix.sparql b/src/sparql/class-count-by-prefix.sparql new file mode 100644 index 00000000..0c4d2844 --- /dev/null +++ b/src/sparql/class-count-by-prefix.sparql @@ -0,0 +1,10 @@ +prefix owl: +prefix obo: + +SELECT ?prefix (COUNT(DISTINCT ?cls) AS ?numberOfClasses) WHERE +{ + ?cls a owl:Class . + FILTER (!isBlank(?cls)) + BIND( STRBEFORE(STRAFTER(str(?cls),"http://purl.obolibrary.org/obo/"), "_") AS ?prefix) +} +GROUP BY ?prefix diff --git a/src/sparql/def-lacks-xref-violation.sparql b/src/sparql/def-lacks-xref-violation.sparql new file mode 100644 index 00000000..cff97737 --- /dev/null +++ b/src/sparql/def-lacks-xref-violation.sparql @@ -0,0 +1,12 @@ +prefix oio: +prefix def: +prefix owl: + +SELECT ?cls ?def (group_concat(?xref) as ?xrefs) WHERE +{ + ?cls a owl:Class . + OPTIONAL { ?cls oio:hasDbXref ?xref } . + OPTIONAL { ?cls def: ?def } . + FILTER (!isBlank(?cls)) +} +GROUP BY ?cls ?def diff --git a/src/sparql/edges.sparql b/src/sparql/edges.sparql new file mode 100644 index 00000000..5fec04ea --- /dev/null +++ b/src/sparql/edges.sparql @@ -0,0 +1,19 @@ +prefix obo: +prefix owl: +prefix rdfs: +prefix rdf: + +SELECT ?x ?p ?y +WHERE { + {?x rdfs:subClassOf [ + a owl:Restriction ; + owl:onProperty ?p ; + owl:someValuesFrom ?y ] + } + UNION { + ?x rdfs:subClassOf ?y . + BIND(rdfs:subClassOf AS ?p) + } + ?x a owl:Class . + ?y a owl:Class . +} diff --git a/src/sparql/equivalent-classes-violation.sparql b/src/sparql/equivalent-classes-violation.sparql new file mode 100644 index 00000000..ed5ccdd0 --- /dev/null +++ b/src/sparql/equivalent-classes-violation.sparql @@ -0,0 +1,14 @@ +prefix oio: +prefix owl: +prefix rdfs: + +SELECT ?baseClass ?baseLabel ?equivalentClass ?equivalentLabel WHERE +{ + ?baseClass owl:equivalentClass ?equivalentClass . + ?baseClass rdfs:label ?baseLabel . + ?equivalentClass rdfs:label ?equivalentLabel . + + FILTER (!isBlank(?baseClass)) . + FILTER (!isBlank(?equivalentClass)) + +} diff --git a/src/sparql/inject-subset-declaration.ru b/src/sparql/inject-subset-declaration.ru new file mode 100644 index 00000000..d7368cb5 --- /dev/null +++ b/src/sparql/inject-subset-declaration.ru @@ -0,0 +1,9 @@ +PREFIX : +PREFIX rdf: +PREFIX rdfs: + +INSERT { ?y rdfs:subPropertyOf . } + +WHERE { + ?x ?y . +} \ No newline at end of file diff --git a/src/sparql/labels.sparql b/src/sparql/labels.sparql new file mode 100644 index 00000000..89e9ec7f --- /dev/null +++ b/src/sparql/labels.sparql @@ -0,0 +1,9 @@ +PREFIX owl: +PREFIX rdf: +PREFIX rdfs: + +SELECT ?x (STR(?lab) AS ?label) WHERE { + ?x rdf:type owl:Class . + OPTIONAL {?x rdfs:label ?lab} +} +ORDER BY ?x diff --git a/src/sparql/nolabels-violation.sparql b/src/sparql/nolabels-violation.sparql new file mode 100644 index 00000000..d506a41e --- /dev/null +++ b/src/sparql/nolabels-violation.sparql @@ -0,0 +1,13 @@ +PREFIX owl: +PREFIX rdf: +PREFIX rdfs: +PREFIX replaced_by: + +SELECT ?cls WHERE { + ?cls a owl:Class + FILTER NOT EXISTS {?cls rdfs:label ?lab} + FILTER NOT EXISTS {?cls replaced_by: ?replCls} + FILTER (!isBlank(?cls)) + FILTER ( regex(str(?cls), "^http://purl.obolibrary.org/obo/GO_")) +} +ORDER BY ?cls diff --git a/src/sparql/obsolete-violation.sparql b/src/sparql/obsolete-violation.sparql new file mode 100644 index 00000000..c81bf718 --- /dev/null +++ b/src/sparql/obsolete-violation.sparql @@ -0,0 +1,24 @@ +prefix xsd: +PREFIX owl: +PREFIX rdf: +PREFIX rdfs: +PREFIX replaced_by: +PREFIX consider: + +SELECT ?cls ?clsLabel ?rule WHERE { + ?cls a owl:Class ; + rdfs:label ?clsLabel ; + owl:deprecated "true"^^xsd:boolean + { + { + FILTER ( ! regex(str(?clsLabel), "^obsolete ") ) + BIND ("obsolete label must start with obsolete" AS ?rule) + } + UNION + { + ?cls rdfs:subClassOf ?parent + BIND("no logical axioms for obsolete" AS ?rule) + } + } +} +ORDER BY ?cls diff --git a/src/sparql/obsoletes.sparql b/src/sparql/obsoletes.sparql new file mode 100644 index 00000000..7aff433b --- /dev/null +++ b/src/sparql/obsoletes.sparql @@ -0,0 +1,14 @@ +prefix xsd: +PREFIX owl: +PREFIX rdf: +PREFIX rdfs: +PREFIX replaced_by: +PREFIX consider: + +SELECT ?cls ?replCls ?consCls WHERE { + ?cls a owl:Class ; + owl:deprecated "true"^^xsd:boolean . + OPTIONAL {?cls replaced_by: ?replCls} + OPTIONAL {?cls consider: ?consCls} +} +ORDER BY ?cls diff --git a/src/sparql/owldef-self-reference-violation.sparql b/src/sparql/owldef-self-reference-violation.sparql new file mode 100644 index 00000000..63857fea --- /dev/null +++ b/src/sparql/owldef-self-reference-violation.sparql @@ -0,0 +1,11 @@ +prefix rdf: +prefix oio: +prefix owl: +prefix rdfs: + +SELECT ?c +WHERE { + { ?c owl:equivalentClass [ owl:intersectionOf [ rdf:rest*/rdf:first ?c ] ] } + UNION + { ?c owl:equivalentClass [ owl:intersectionOf [ rdf:rest*/rdf:first [ owl:someValuesFrom ?c ] ] ] } +} diff --git a/src/sparql/owldef-violation.sparql b/src/sparql/owldef-violation.sparql new file mode 100644 index 00000000..3b59f882 --- /dev/null +++ b/src/sparql/owldef-violation.sparql @@ -0,0 +1,9 @@ +prefix oio: +prefix owl: +prefix rdfs: + +WELECT * +WHERE { + ?c rdfs:subClassOf ?d ; + owl:equivalentClass [ + owl:intersectionOf TODO diff --git a/src/sparql/pato_terms.sparql b/src/sparql/pato_terms.sparql new file mode 100644 index 00000000..26d409ba --- /dev/null +++ b/src/sparql/pato_terms.sparql @@ -0,0 +1,9 @@ +SELECT DISTINCT ?term +WHERE { + { ?s1 ?p1 ?term . } + UNION + { ?term ?p2 ?o2 . } + FILTER(isIRI(?term) && (regex(str(?term), UCASE("pato_")))) +} + + diff --git a/src/sparql/redundant-subClassOf-violation.sparql b/src/sparql/redundant-subClassOf-violation.sparql new file mode 100644 index 00000000..bed15cd9 --- /dev/null +++ b/src/sparql/redundant-subClassOf-violation.sparql @@ -0,0 +1,15 @@ +prefix oio: +prefix owl: +prefix rdfs: + +SELECT ?x ?xl ?y ?yl ?z ?zl WHERE +{ + ?x rdfs:subClassOf ?y ; + rdfs:label ?xl . + ?y rdfs:subClassOf+ ?z ; + rdfs:label ?yl . + ?x rdfs:subClassOf ?z . + ?z rdfs:label ?zl . + + +} diff --git a/src/sparql/simple-seed.sparql b/src/sparql/simple-seed.sparql new file mode 100644 index 00000000..e62d2167 --- /dev/null +++ b/src/sparql/simple-seed.sparql @@ -0,0 +1,12 @@ +prefix owl: +prefix obo: + +SELECT DISTINCT ?cls WHERE +{ + {?cls a owl:ObjectProperty .} + UNION + {?x ?cls} + UNION + {?x ?cls} + FILTER (!isBlank(?cls)) +} diff --git a/src/sparql/subsets-labeled.sparql b/src/sparql/subsets-labeled.sparql new file mode 100644 index 00000000..9f8aca68 --- /dev/null +++ b/src/sparql/subsets-labeled.sparql @@ -0,0 +1,14 @@ +prefix oio: +prefix def: +prefix owl: +prefix inSubset: +prefix rdfs: + +SELECT ?subset ?clsLabel +WHERE +{ + ?cls a owl:Class . + inSubset: ?subset ; + rdfs:label ?clsLabel +} +ORDER BY ?subset ?cls diff --git a/src/sparql/synonyms.sparql b/src/sparql/synonyms.sparql new file mode 100644 index 00000000..ba6b03a7 --- /dev/null +++ b/src/sparql/synonyms.sparql @@ -0,0 +1,26 @@ +prefix owl: +prefix oboInOwl: +prefix rdfs: + +SELECT ?cls ?pred ?val ?synType +WHERE + { ?cls ?pred ?val ; + a owl:Class . + FILTER ( + ?pred = rdfs:label || + ?pred = oboInOwl:hasRelatedSynonym || + ?pred = oboInOwl:hasNarrowSynonym || + ?pred = oboInOwl:hasBroadSynonym || + ?pred = oboInOwl:hasExactSynonym + ) + + OPTIONAL { + [ + a owl:Axiom ; + owl:annotatedSource ?cls ; + owl:annotatedProperty ?pred ; + owl:annotatedTarget ?val ; + oboInOwl:hasSynonymType ?synType + ] + } + } diff --git a/src/sparql/terms.sparql b/src/sparql/terms.sparql new file mode 100644 index 00000000..e65a105a --- /dev/null +++ b/src/sparql/terms.sparql @@ -0,0 +1,7 @@ +SELECT DISTINCT ?term +WHERE { + { ?s1 ?p1 ?term . } + UNION + { ?term ?p2 ?o2 . } + FILTER(isIRI(?term)) +} \ No newline at end of file diff --git a/src/sparql/trailing-whitespace-violation.sparql b/src/sparql/trailing-whitespace-violation.sparql new file mode 100644 index 00000000..1d69472d --- /dev/null +++ b/src/sparql/trailing-whitespace-violation.sparql @@ -0,0 +1,11 @@ +# home: hp/sparql/trailing-whitespace-violation.sparql +prefix owl: +prefix rdfs: + +SELECT ?c ?p ?x WHERE +{ + ?c ?p ?x . + + FILTER( regex(STR(?x), "^ ") || regex(STR(?x), " $") ) + FILTER( ?p != owl:annotatedTarget ) +} diff --git a/src/sparql/xref-syntax-violation.sparql b/src/sparql/xref-syntax-violation.sparql new file mode 100644 index 00000000..98a61720 --- /dev/null +++ b/src/sparql/xref-syntax-violation.sparql @@ -0,0 +1,13 @@ +# home: hp +prefix hasDbXref: +prefix oio: +prefix owl: +prefix rdfs: + +SELECT ?c ?x WHERE +{ + ?c hasDbXref: ?x . + + FILTER( regex(STR(?x), " ") || regex(STR(?x), ";") || STR(?x) = "" ) + +} diff --git a/src/sparql/xrefs.sparql b/src/sparql/xrefs.sparql new file mode 100644 index 00000000..bde8fc98 --- /dev/null +++ b/src/sparql/xrefs.sparql @@ -0,0 +1,8 @@ +prefix oio: +prefix owl: + +SELECT ?cls ?xref WHERE +{ + ?cls a owl:Class ; + oio:hasDbXref ?xref +} From 6e1a021c955f27b75e9791cdbed126d259dd206a Mon Sep 17 00:00:00 2001 From: matentzn Date: Fri, 13 Sep 2019 12:04:46 +0100 Subject: [PATCH 03/13] First full ODK 1.2.18 release --- .gitignore | 23 + imports/chebi_import.json | 39 + imports/chebi_import.obo | 18 + imports/go_import.json | 120 + imports/pco_import.json | 144 + imports/ro_import.json | 1345 + imports/uberon_import.json | 16 + pato-base.json | 559 +- pato-base.obo | 57 +- pato-base.owl | 330 +- pato-full.json | 65673 ++++++++++++++++ pato-full.obo | 22539 ++++++ pato-full.owl | 56160 +++++++++++++ pato-simple.json | 58189 ++++++++++++++ pato-simple.obo | 21199 +++++ pato-simple.owl | 48812 ++++++++++++ pato.json | 6596 +- pato.obo | 1539 +- pato.owl | 4583 +- reports/pato-edit.obo-obo-report.tsv | 104 + src/ontology/Makefile | 447 +- src/ontology/imports/chebi_import.json | 39 + src/ontology/imports/chebi_import.obo | 18 + src/ontology/imports/go_import.json | 120 + src/ontology/imports/pco_import.json | 144 + src/ontology/imports/ro_import.json | 1345 + src/ontology/imports/uberon_import.json | 16 + src/ontology/imports/uberon_import.obo | 3 + src/ontology/merged-pato-edit.obo | 21727 +++++ src/ontology/ontologyterms.txt | 2746 + src/ontology/pato-edit.obo | 52 +- .../reports/pato-edit.obo-obo-report.tsv | 104 + src/ontology/simple_seed.txt | 2782 + 33 files changed, 304832 insertions(+), 12756 deletions(-) create mode 100644 imports/chebi_import.json create mode 100644 imports/chebi_import.obo create mode 100644 imports/go_import.json create mode 100644 imports/pco_import.json create mode 100644 imports/ro_import.json create mode 100644 imports/uberon_import.json create mode 100644 pato-full.json create mode 100644 pato-full.obo create mode 100644 pato-full.owl create mode 100644 pato-simple.json create mode 100644 pato-simple.obo create mode 100644 pato-simple.owl create mode 100644 reports/pato-edit.obo-obo-report.tsv create mode 100644 src/ontology/imports/chebi_import.json create mode 100644 src/ontology/imports/chebi_import.obo create mode 100644 src/ontology/imports/go_import.json create mode 100644 src/ontology/imports/pco_import.json create mode 100644 src/ontology/imports/ro_import.json create mode 100644 src/ontology/imports/uberon_import.json create mode 100644 src/ontology/imports/uberon_import.obo create mode 100644 src/ontology/merged-pato-edit.obo create mode 100644 src/ontology/reports/pato-edit.obo-obo-report.tsv create mode 100644 src/ontology/simple_seed.txt diff --git a/.gitignore b/.gitignore index 52771145..ae2ad657 100644 --- a/.gitignore +++ b/.gitignore @@ -5,3 +5,26 @@ src/ontology/pato.owl src/ontology/pato_ext.owl pato_ext.json .DS_Store +src/ontology/simple_seed.txt.tmp +.DS_Store +*.tmp +src/ontology/mirror +src/ontology/mirror/* +src/ontology/pato.owl +src/ontology/pato.obo +src/ontology/pato.json +src/ontology/pato-base.* +src/ontology/pato-basic.* +src/ontology/pato-full.* +src/ontology/pato-simple.* +src/ontology/pato-simple-non-classified.* +semantic.cache +bin/ +src/ontology/seed.txt +src/ontology/target/ +src/ontology/dosdp-tools.log +src/patterns/imports/seed_sorted.txt +src/ontology/ed_definitions_merged.owl +src/ontology/patterns +*.tmp.obo +*.tmp.owl \ No newline at end of file diff --git a/imports/chebi_import.json b/imports/chebi_import.json new file mode 100644 index 00000000..6fdb3b06 --- /dev/null +++ b/imports/chebi_import.json @@ -0,0 +1,39 @@ +{ + "graphs" : [ { + "nodes" : [ { + "id" : "http://purl.obolibrary.org/obo/CHEBI_46662", + "type" : "CLASS", + "lbl" : "mineral" + }, { + "id" : "http://purl.obolibrary.org/obo/CHEBI_24431", + "type" : "CLASS", + "lbl" : "chemical entity" + }, { + "id" : "http://purl.obolibrary.org/obo/CHEBI_59999", + "type" : "CLASS", + "lbl" : "chemical substance" + } ], + "edges" : [ { + "sub" : "http://purl.obolibrary.org/obo/CHEBI_59999", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CHEBI_24431" + }, { + "sub" : "http://purl.obolibrary.org/obo/CHEBI_46662", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CHEBI_59999" + } ], + "id" : "file:/imports/chebi_import.owl", + "meta" : { + "subsets" : [ ], + "xrefs" : [ ], + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://purl.obolibrary.org/obo/chebi/131/chebi.owl" + } ] + }, + "equivalentNodesSets" : [ ], + "logicalDefinitionAxioms" : [ ], + "domainRangeAxioms" : [ ], + "propertyChainAxioms" : [ ] + } ] +} \ No newline at end of file diff --git a/imports/chebi_import.obo b/imports/chebi_import.obo new file mode 100644 index 00000000..bc91c66b --- /dev/null +++ b/imports/chebi_import.obo @@ -0,0 +1,18 @@ +format-version: 1.2 +ontology: file:/imports/chebi_import.owl +property_value: http://purl.org/dc/elements/1.1/source http://purl.obolibrary.org/obo/chebi/131/chebi.owl + +[Term] +id: CHEBI:24431 +name: chemical entity + +[Term] +id: CHEBI:46662 +name: mineral +is_a: CHEBI:59999 ! chemical substance + +[Term] +id: CHEBI:59999 +name: chemical substance +is_a: CHEBI:24431 ! chemical entity + diff --git a/imports/go_import.json b/imports/go_import.json new file mode 100644 index 00000000..83b1344d --- /dev/null +++ b/imports/go_import.json @@ -0,0 +1,120 @@ +{ + "graphs" : [ { + "nodes" : [ { + "id" : "http://purl.obolibrary.org/obo/GO_0120025", + "type" : "CLASS", + "lbl" : "plasma membrane bounded cell projection" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043227", + "type" : "CLASS", + "lbl" : "membrane-bounded organelle" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005623", + "type" : "CLASS", + "lbl" : "cell" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005634", + "type" : "CLASS", + "lbl" : "nucleus" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043226", + "type" : "CLASS", + "lbl" : "organelle" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0042995", + "type" : "CLASS", + "lbl" : "cell projection" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043229", + "type" : "CLASS", + "lbl" : "intracellular organelle" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0044424", + "type" : "CLASS", + "lbl" : "intracellular part" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005575", + "type" : "CLASS", + "lbl" : "cellular_component" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005929", + "type" : "CLASS", + "lbl" : "cilium" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0044464", + "type" : "CLASS", + "lbl" : "cell part" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043231", + "type" : "CLASS", + "lbl" : "intracellular membrane-bounded organelle" + } ], + "edges" : [ { + "sub" : "http://purl.obolibrary.org/obo/GO_0043231", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043229" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043231", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043227" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005634", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043231" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005623", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0005575" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043226", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0005575" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043229", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044424" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0120025", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0042995" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043229", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043226" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044424", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044464" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042995", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044464" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044464", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0005575" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043227", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043226" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005929", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0120025" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005929", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043226" + } ], + "id" : 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"http://purl.obolibrary.org/obo/PCO_0000001", + "type" : "CLASS", + "lbl" : "population of organisms" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001241", + "type" : "CLASS", + "lbl" : "physical object quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002003", + "type" : "CLASS", + "lbl" : "population quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000001", + "type" : "CLASS", + "lbl" : "quality" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0001010", + "type" : "CLASS", + "lbl" : "organism or virus or viroid" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000001", + "type" : "CLASS", + "lbl" : "entity" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000003", + "type" : "CLASS", + "lbl" : "quality of a population" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000002", + "type" : "CLASS", + "lbl" : "continuant" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000003", + "type" : "CLASS", + "lbl" : "occurrent" + }, { + 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00000000..fc2dd078 --- /dev/null +++ b/imports/ro_import.json @@ -0,0 +1,1345 @@ +{ + "graphs" : [ { + "nodes" : [ { + "id" : "http://purl.obolibrary.org/obo/CARO_0000006", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "material anatomical entity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0003674", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "molecular process" + } ] + }, + "type" : "CLASS", + "lbl" : "molecular_function" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000015", + "meta" : { + "definition" : { + "val" : "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005634", + "meta" : { 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dependent specifically depends on the bearer for its existence", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this red color inheres in this apple" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A dependent inheres in its bearer at all times for which the dependent exists." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this fragility inheres in this vase" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "inheres in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "inheres_in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "inheres in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000056", + "meta" : { + "definition" : { + "val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this input material (or this output material) participates in this process" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this investigator participates in this investigation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "participates_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this blood clot participates in this blood coagulation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "participates in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "participates in" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0044464", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "cell part" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000053", + "meta" : { + "definition" : { + "val" : "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "bearer of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this vase is bearer of this fragility" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "bearer_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this apple is bearer of this red color" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is bearer of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "bearer of" + }, { + "id" : "http://purl.obolibrary.org/obo/CL_0000000", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/cl.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "cell" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0008150", + "type" : "CLASS", + "lbl" : "biological_process" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000050", + "meta" : { + "definition" : { + "val" : "a core relation that holds between a part and its whole", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my brain is part of my body (continuant parthood, two material entities)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "is part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this day is part of this year (occurrent parthood)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." + } ] + }, + "type" : "PROPERTY", + "lbl" : "part of" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0030000", + "type" : "CLASS", + "lbl" : "biological entity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016301", + "type" : "CLASS", + "lbl" : "kinase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016740", + "type" : "CLASS", + "lbl" : "transferase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000051", + "meta" : { + "definition" : { + "val" : "a core relation that holds between a whole and its part", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has part" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my body has part my brain (continuant parthood, two material entities)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_part" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this year has part this day (occurrent parthood)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has part" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000014", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "cell part (CARO)" + } ] + }, + "type" : "CLASS", + "lbl" : "cell part" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000004", + "meta" : { + "definition" : { + "val" : "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "independent continuant" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002222", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" + } ] + }, + "type" : "PROPERTY", + "lbl" : "temporally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002086", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + } ] + }, + "type" : "PROPERTY", + "lbl" : "ends after" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002087", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "starts_at_end_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately preceded by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000057", + "meta" : { + "definition" : { + "val" : "a relation between a process and a continuant, in which the continuant is somehow involved in the process", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:has_participant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this blood coagulation has participant this blood clot" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has participant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_participant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this process has participant this input material (or this output material)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this investigation has participant this investigator" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has participant" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000066", + "meta" : { + "definition" : { + "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "occurs_in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "occurs in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" + } ] + }, + "type" : "PROPERTY", + "lbl" : "occurs in" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0001010", + "type" : "CLASS", + "lbl" : "organism or virus or viroid" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "meta" : { + "definition" : { + "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "site of" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + } ] + }, + "type" : "PROPERTY", + "lbl" : "contains process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016772", + "type" : "CLASS", + "lbl" : "transferase activity, transferring phosphorus-containing groups" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000002", + "meta" : { + "definition" : { + "val" : "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "continuant" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000003", + "meta" : { + "definition" : { + "val" : "An entity that has temporal parts and that happens, unfolds or develops through time.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "occurrent" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000062", + "meta" : { + "definition" : { + "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is preceded by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "preceded_by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "preceded by" + } ] + }, + "type" : "PROPERTY", + "lbl" : "preceded by" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000040", + "meta" : { + "definition" : { + "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "material entity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000063", + "meta" : { + "definition" : { + "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "precedes" + } ] + }, + "type" : "PROPERTY", + "lbl" : "precedes" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0003824", + "type" : "CLASS", + "lbl" : "catalytic activity" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000000", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "anatomical entity" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000003", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "connected anatomical structure" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000020", + "meta" : { + "definition" : { + "val" : "A continuant that inheres in or is borne by other entities. 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+ "propertyChainAxioms" : [ ] + } ] +} \ No newline at end of file diff --git a/pato-base.json b/pato-base.json index be342adc..e0065dcc 100644 --- a/pato-base.json +++ b/pato-base.json @@ -49661,14 +49661,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001163", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001159" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001247", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001163", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001159" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001381", "pred" : "is_a", @@ -49813,14 +49813,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001629", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002178", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001729", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002178", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005004", "pred" : "is_a", @@ -49957,6 +49957,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001323", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001709" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015007", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005003", "pred" : "is_a", @@ -50093,10 +50097,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002464", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045077", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001713", "pred" : "is_a", @@ -50142,17 +50142,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001590" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", + "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045070", "pred" : "is_a", @@ -50237,10 +50237,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001824", "pred" : "is_a", @@ -50409,14 +50405,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001248", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045020", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000955" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001380", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045020", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000955" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000066", "pred" : "is_a", @@ -50445,10 +50441,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045010", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001159" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001958", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001967", "pred" : "is_a", @@ -50457,14 +50449,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001728", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001727" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001625", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001559" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001678", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001029" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001625", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001559" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001281", "pred" : "is_a", @@ -50493,14 +50485,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001825", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001825", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001054", "pred" : "is_a", @@ -50649,6 +50641,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002069", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002067" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", "pred" : "is_a", @@ -50657,10 +50653,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001539", "pred" : "is_a", @@ -50713,10 +50705,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045079", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002242" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001307", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001599", "pred" : "is_a", @@ -50725,10 +50713,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001318", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000189" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001307", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", "pred" : "is_a", @@ -50861,10 +50845,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000083", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002323" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001304", - "pred" : "http://purl.obolibrary.org/obo/pato#towards", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000718", "pred" : "is_a", @@ -50973,10 +50953,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002510", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001655", "pred" : "is_a", @@ -50985,10 +50961,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000596", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000918" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001658", "pred" : "is_a", @@ -51061,14 +51033,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001965", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002351", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001877", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001419" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002351", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002140", "pred" : "is_a", @@ -51445,14 +51417,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001615", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", "pred" : "is_a", @@ -51617,14 +51589,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002498", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000944", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002124", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000944", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002366", "pred" : "is_a", @@ -52225,10 +52197,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002358", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001242", "pred" : "is_a", @@ -52257,10 +52225,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045032", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030005", "pred" : "is_a", @@ 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"is_a", @@ -52489,10 +52449,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001613", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001868", "pred" : "is_a", @@ -52957,14 +52913,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001997", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000992", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001548" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001997", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002348", "pred" : "is_a", @@ -52985,10 +52941,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002117", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015007", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040007", "pred" : "is_a", @@ -53021,14 +52973,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045030", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000125" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001386", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001385" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001335", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001895" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001386", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001385" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002333", "pred" : "is_a", @@ -53382,17 +53334,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001923", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001923", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", "pred" : "is_a", @@ -53685,10 +53637,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000414", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002009" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045078", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001314" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001676", "pred" : "is_a", @@ -53709,22 +53657,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001739", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001587", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001543", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001546" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045074", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001227" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001587", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001899", "pred" : "is_a", @@ -53745,10 +53681,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001257", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000954" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001950", "pred" : "is_a", @@ -53757,22 +53689,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045058", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045037", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001761", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001767" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045037", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001750", "pred" : "is_a", @@ -53829,14 +53757,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000626", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000634", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000626", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002370", "pred" : "is_a", @@ -53929,10 +53857,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002272", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001588", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001918", "pred" : "is_a", @@ -53941,18 +53865,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001315", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001653", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001652" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001588", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001333", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002324" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001653", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001652" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001312", "pred" : "is_a", @@ -54041,10 +53961,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001958", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", @@ -54061,10 +53977,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001987", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001958", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002067", "pred" : "is_a", @@ -54545,14 +54457,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000375", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000040" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045054" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001193", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045054" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045049", "pred" : "is_a", @@ -54597,14 +54509,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000165" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001875", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001861", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002013" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001875", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000152", "pred" : "is_a", @@ -54617,10 +54529,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000595", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045078", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005009", "pred" : "is_a", @@ -54657,14 +54565,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002041", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002129", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002316", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002129", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002436", "pred" : "is_a", @@ -54725,10 +54633,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000610", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000136" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001587", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001586" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000370", "pred" : "is_a", @@ -54789,22 +54693,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000279", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000274" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001583", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001584", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001227" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001352", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001019" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001583", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002357", "pred" : "is_a", @@ -54865,14 +54757,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000141", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002052", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000021", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002052", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001876", "pred" : "is_a", @@ -55013,10 +54905,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000764", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001588", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001586" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001347", "pred" : "is_a", @@ -55101,14 +54989,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045043", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045040" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001584", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001584", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001541", "pred" : "is_a", @@ -55117,14 +54997,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001814", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002345", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001814", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045034", "pred" : "is_a", @@ -55189,14 +55069,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002430", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000638", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002430", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002062", "pred" : "is_a", @@ -55241,26 +55121,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001830", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002135", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000502" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002180", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002167", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002135", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001646" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000502" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002456", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002167", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001646" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002327", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002456", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000499", "pred" : "is_a", @@ -55301,10 +55181,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001476", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045076", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001586" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000620", "pred" : "is_a", @@ -55389,22 +55265,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001561", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001564" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045076", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001519", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001714", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001334" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001705", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001424" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001714", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001334" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001268", "pred" : "is_a", @@ -55473,14 +55345,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001470", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002023", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001999" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002023", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002422", "pred" : "is_a", @@ -55517,14 +55389,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000624", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002435", "pred" : "is_a", @@ -55673,10 +55545,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001475", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045077", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001715", "pred" : "is_a", @@ -55693,10 +55561,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001785", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001583", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001227" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001351", "pred" : "is_a", @@ -55721,14 +55585,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001430", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/PATO_0002212" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001430", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002324", "pred" : "is_a", @@ -55773,10 +55637,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000461", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000068" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001314" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001412", "pred" : "is_a", @@ -55829,10 +55689,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001189", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001303", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002144", "pred" : "is_a", @@ -55845,14 +55701,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001636", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001634" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001528", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001519" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001331" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001528", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001519" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000018", "pred" : "is_a", @@ -55897,10 +55753,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002494", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001615" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001663", "pred" : "is_a", @@ -55937,14 +55789,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001783", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001770", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001782", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000049" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001770", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002229", "pred" : "is_a", @@ -56013,14 +55865,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000983", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000970" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001250", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000320" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001900", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001250", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000320" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000956", "pred" : "is_a", @@ -56041,10 +55893,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001990", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045074", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005012", "pred" : "is_a", @@ -56097,14 +55945,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001188", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001758", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001757" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001748", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001758", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001757" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001746", "pred" : "is_a", @@ -56169,10 +56017,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001613", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001615" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002309", "pred" : "is_a", @@ -56249,14 +56093,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002518", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0050001", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002196", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0050001", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002019", "pred" : "is_a", @@ -56313,22 +56157,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000701", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", + "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000122" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001275", "pred" : "is_a", @@ -56341,10 +56185,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002268", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045075", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000125", "pred" : "is_a", @@ -56421,14 +56261,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001717", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001674", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001480", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -56589,14 +56429,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000077" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001744", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001739" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000077" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000330", "pred" : "is_a", @@ -56697,10 +56537,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001411", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001307", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001314" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001512", "pred" : "is_a", @@ -56753,14 +56589,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001474", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001576", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002503", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001576", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001405", "pred" : "is_a", @@ -57001,10 +56837,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000366", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045075", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001615" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002393", "pred" : "is_a", @@ -57125,14 +56957,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001290", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002534", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001753", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002534", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002123", "pred" : "is_a", @@ -57205,10 +57037,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002108", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000623" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045077", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045023", "pred" : "is_a", @@ -57449,10 +57277,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002193", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045078", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002264", "pred" : "is_a", @@ -57641,10 +57465,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002297", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045074", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001483", "pred" : "is_a", @@ -57793,6 +57613,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001563", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001303", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001261", "pred" : "is_a", @@ -57897,10 +57721,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001437", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001435" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045075", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001889", "pred" : "is_a", @@ -57909,14 +57729,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001194", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002155", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002261", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002155", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001793", "pred" : "is_a", @@ -57929,14 +57749,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001317", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002070", "pred" : "is_a", @@ -57945,10 +57765,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001365", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001304", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", "pred" : "is_a", @@ -58005,10 +57821,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001857", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002005" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045076", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000760", "pred" : "is_a", @@ -58058,7 +57870,7 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" } ], - "id" : "http://purl.obolibrary.org/obo/pato/pato-base.owl", + "id" : "http://purl.obolibrary.org/obo/pato/pato-base.json", "meta" : { "subsets" : [ ], "xrefs" : [ ], @@ -58077,10 +57889,8 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#saved-by", "val" : "segerdel" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 51 Logical Axioms: 19]" - } ] + } ], + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-09-13/pato-base.json" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ { @@ -58209,6 +58019,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001304", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001303" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/pato#towards", + "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000146" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045074", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001227" ], @@ -59695,15 +59512,15 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001778", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001230" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001551", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001457" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001551", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001457" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001778", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001230" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" diff --git a/pato-base.obo b/pato-base.obo index 23d0dee2..ee942a4c 100644 --- a/pato-base.obo +++ b/pato-base.obo @@ -1,4 +1,5 @@ format-version: 1.2 +data-version: pato/releases/2019-09-13/pato-base.owl date: 07:02:2018 10:27 saved-by: segerdel auto-generated-by: OBO-Edit 2.3.1 @@ -13,9 +14,7 @@ subsetdef: relational_slim "Relational slim: types of quality that require an ad subsetdef: scalar_slim "Scalar slim" subsetdef: value_slim "Value slim" default-namespace: quality -remark: Includes Ontology(OntologyID(OntologyIRI() VersionIRI())) [Axioms: 51 Logical Axioms: 19] ontology: pato/pato-base -owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\n\n\nEquivalentClasses(ObjectComplementOf(ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectExactCardinality(2 ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectExactCardinality(1 ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectMinCardinality(2 ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectMinCardinality(2 ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectMinCardinality(2 ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectExactCardinality(1 ))\nSubClassOf(ObjectSomeValuesFrom( ) )\nSubClassOf(ObjectSomeValuesFrom( ) )\nSubClassOf(ObjectSomeValuesFrom( ) )\nSubClassOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nSubClassOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nSubClassOf(ObjectSomeValuesFrom( ) )\nDisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\n) [Term] id: PATO:0000000 @@ -8095,15 +8094,15 @@ name: variability def: "A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing." [Dictionary:http\://dictionary.reference.com/] subset: attribute_slim synonym: "variability of a physical quality" RELATED [] -is_a: PATO:0001236 ! process quality +is_a: PATO:0000001 ! quality [Term] id: PATO:0001304 name: variability of temperature def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change." [PATO:GVG] subset: attribute_slim -is_a: PATO:0001303 ! variability -relationship: towards PATO:0000146 ! temperature +intersection_of: PATO:0001303 ! variability +intersection_of: towards PATO:0000146 ! temperature [Term] id: PATO:0001305 @@ -8139,9 +8138,6 @@ name: decreased variability of temperature def: "A variability of temperature which is relatively low." [PATOC:GVG] subset: value_slim synonym: "low variability of temperature" EXACT [] -is_a: PATO:0001314 ! variant temperature -is_a: PATO:0002302 ! decreased process quality -is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0001314 ! variant temperature intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001308 ! increased variability of temperature @@ -8152,9 +8148,6 @@ name: increased variability of temperature def: "A variability of temperature which is relatively high." [PATOC:GVG] subset: value_slim synonym: "high variability of temperature" EXACT [] -is_a: PATO:0001314 ! variant temperature -is_a: PATO:0002304 ! increased process quality -is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0001314 ! variant temperature intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001307 ! decreased variability of temperature @@ -10450,9 +10443,6 @@ name: decreased variability def: "A variability which is relatively low." [PATO:GVG] subset: value_slim synonym: "low variability" EXACT [] -is_a: PATO:0001227 ! variant -is_a: PATO:0002302 ! decreased process quality -is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0001227 ! variant intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001584 ! increased variability @@ -10463,9 +10453,6 @@ name: increased variability def: "A variability which is relatively high." [PATO:GVG] subset: value_slim synonym: "high variability" EXACT [] -is_a: PATO:0001227 ! variant -is_a: PATO:0002304 ! increased process quality -is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0001227 ! variant intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001583 ! decreased variability @@ -10494,9 +10481,6 @@ name: increased variability of rate def: "A variability of rate which is relatively high." [PATO:GVG] subset: value_slim synonym: "high variability of rate" EXACT [] -is_a: PATO:0001586 ! variability of rate -is_a: PATO:0002304 ! increased process quality -is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0001586 ! variability of rate intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001588 ! decreased variability of rate @@ -10507,9 +10491,6 @@ name: decreased variability of rate def: "A variability of rate which is relatively low." [PATO:GVG] subset: value_slim synonym: "low variability of rate" EXACT [] -is_a: PATO:0001586 ! variability of rate -is_a: PATO:0002302 ! decreased process quality -is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0001586 ! variability of rate intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001587 ! increased variability of rate @@ -10716,9 +10697,6 @@ name: increased variability of color def: "A variability of color which is relatively high." [PATO:GVG] subset: value_slim synonym: "high variability of color" EXACT [] -is_a: PATO:0001615 ! variant color -is_a: PATO:0002304 ! increased process quality -is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0001615 ! variant color intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001613 ! decreased variability of color @@ -10729,9 +10707,6 @@ name: decreased variability of color def: "A variability of color which is relatively low." [PATO:GVG] subset: value_slim synonym: "low variability of color" EXACT [] -is_a: PATO:0001615 ! variant color -is_a: PATO:0002302 ! decreased process quality -is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0001615 ! variant color intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001612 ! increased variability of color @@ -13829,9 +13804,6 @@ name: decreased variability of size def: "A variability of size which is relatively low." [PATOC:GVG] subset: value_slim synonym: "low variability of size" EXACT [] -is_a: PATO:0001956 ! variability of size -is_a: PATO:0002302 ! decreased process quality -is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0001956 ! variability of size intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001958 ! increased variability of size @@ -13842,9 +13814,6 @@ name: increased variability of size def: "A variability of size which is relatively high." [PATOC:GVG] subset: value_slim synonym: "high variability of size" EXACT [] -is_a: PATO:0001956 ! variability of size -is_a: PATO:0002304 ! increased process quality -is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0001956 ! variability of size intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001957 ! decreased variability of size @@ -14119,7 +14088,6 @@ id: PATO:0001995 name: organismal quality def: "A quality that inheres in an entire organism or part of an organism." [PATOC:CJM] is_a: PATO:0001241 ! physical object quality -disjoint_from: PATO:0002003 ! population quality [Term] id: PATO:0001997 @@ -19928,7 +19896,7 @@ id: PATO:0015007 name: prominence def: "A quality inhering in a bearer by virtue of the degree to which the bearers stands out or projects beyond a surface or line." [GOC:CJM] subset: attribute_slim -is_a: PATO:0000057 ! occurrence +is_a: PATO:0000140 ! position [Term] id: PATO:0015008 @@ -21333,9 +21301,6 @@ id: PATO:0045074 name: normal variability def: "A variability which is relatively normal or average" [] subset: value_slim -is_a: PATO:0001227 ! variant -is_a: PATO:0045001 ! normal object quality -is_a: PATO:0045073 ! normal process quality intersection_of: PATO:0001227 ! variant intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater @@ -21346,9 +21311,6 @@ id: PATO:0045075 name: normal variability of color def: "A variability which is relatively normal or average" [] subset: value_slim -is_a: PATO:0001615 ! variant color -is_a: PATO:0045001 ! normal object quality -is_a: PATO:0045073 ! normal process quality intersection_of: PATO:0001615 ! variant color intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater @@ -21359,9 +21321,6 @@ id: PATO:0045076 name: normal variability of rate def: "A variability of rate which is relatively normal or average" [] subset: value_slim -is_a: PATO:0001586 ! variability of rate -is_a: PATO:0045001 ! normal object quality -is_a: PATO:0045073 ! normal process quality intersection_of: PATO:0001586 ! variability of rate intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater @@ -21372,9 +21331,6 @@ id: PATO:0045077 name: normal variability of size def: "A variability of size which is relatively normal or average" [] subset: value_slim -is_a: PATO:0001956 ! variability of size -is_a: PATO:0045001 ! normal object quality -is_a: PATO:0045073 ! normal process quality intersection_of: PATO:0001956 ! variability of size intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater @@ -21385,9 +21341,6 @@ id: PATO:0045078 name: normal variability of temperature def: "A variability of temperature which is relatively normal or average" [] subset: value_slim -is_a: PATO:0001314 ! variant temperature -is_a: PATO:0045001 ! normal object quality -is_a: PATO:0045073 ! normal process quality intersection_of: PATO:0001314 ! variant temperature intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater diff --git a/pato-base.owl b/pato-base.owl index 5987bf20..6a356bdb 100644 --- a/pato-base.owl +++ b/pato-base.owl @@ -11,12 +11,12 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> + OBO-Edit 2.3.1 07:02:2018 10:27 quality 1.2 segerdel - Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/pato/pato_ext.owl>) VersionIRI(<http://purl.obolibrary.org/obo/pato/alpha/pato_ext.owl>))) [Axioms: 51 Logical Axioms: 19] @@ -382,30 +382,6 @@ - - - - - - - - - - - - - - - - - - - - - - - - @@ -725,54 +701,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - @@ -19589,7 +19517,7 @@ Association is weaker than correlation or proportionality. These relations may b - + A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing. quality variability of a physical quality @@ -19609,13 +19537,17 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - + + + + + + + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change. quality PATO:0001304 @@ -19715,9 +19647,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - A variability of temperature which is relatively low. low variability of temperature @@ -19749,9 +19678,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - A variability of temperature which is relatively high. high variability of temperature @@ -25527,9 +25453,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - A variability which is relatively low. low variability @@ -25561,9 +25484,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - A variability which is relatively high. high variability @@ -25642,9 +25562,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - A variability of rate which is relatively high. high variability of rate @@ -25676,9 +25593,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - A variability of rate which is relatively low. low variability of rate @@ -26230,9 +26144,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - A variability of color which is relatively high. high variability of color @@ -26264,9 +26175,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - A variability of color which is relatively low. low variability of color @@ -34141,9 +34049,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - A variability of size which is relatively low. low variability of size @@ -34175,9 +34080,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - A variability of size which is relatively high. high variability of size @@ -34896,7 +34798,6 @@ Association is weaker than correlation or proportionality. These relations may b - A quality that inheres in an entire organism or part of an organism. quality PATO:0001995 @@ -48219,7 +48120,7 @@ height'). - + A quality inhering in a bearer by virtue of the degree to which the bearers stands out or projects beyond a surface or line. quality PATO:0015007 @@ -51532,9 +51433,6 @@ height'). - - - A variability which is relatively normal or average Luke Slater 2017-12-22T14:16:43Z @@ -51560,9 +51458,6 @@ height'). - - - A variability which is relatively normal or average Luke Slater 2017-12-22T14:16:43Z @@ -51588,9 +51483,6 @@ height'). - - - A variability of rate which is relatively normal or average Luke Slater 2017-12-22T14:16:43Z @@ -51616,9 +51508,6 @@ height'). - - - A variability of size which is relatively normal or average Luke Slater 2017-12-22T14:16:43Z @@ -51644,9 +51533,6 @@ height'). - - - A variability of temperature which is relatively normal or average Luke Slater 2017-12-22T14:16:43Z @@ -52208,194 +52094,6 @@ height'). A quality inhering in a bearer by virtue of the bearer's being present in females and absent from males in members of the same species. http://orcid.org/0000-0002-1373-1705 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2 - - - - - - - - - - - 1 - - - - - - - - - - - 2 - - - - - - - - - - - 2 - - - - - - - - - - - - - - - - - - - - - 2 - - - - - - - - - - - 1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/pato-full.json b/pato-full.json new file mode 100644 index 00000000..c9ab92e5 --- /dev/null +++ b/pato-full.json @@ -0,0 +1,65673 @@ +{ + "graphs" : [ { + "nodes" : [ { + "id" : "http://purl.obolibrary.org/obo/PATO_0000004", + "meta" : { + "definition" : { + "val" : "A quality of inhering in a bearer by virtue of the bearer's disposition to move freely.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Should be defined using translocation." + } ] + }, + "type" : "CLASS", + "lbl" : "mobility" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000488", + "meta" : { + "definition" : { + "val" : "A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "unresponsive", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000487" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "unresponsive to" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001336", + "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in an individual whose sex is unknown.", + "xrefs" : [ "MGED:MGED" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Unknown is not a type of sex." + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete unknown sex" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000487", + "meta" : { + "definition" : { + "val" : "A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "responsive", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000488" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "responsive to" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000003", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + 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"Wikipedia:http://en.wikipedia.org/wiki/Diameter" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "diameter" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000006", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete process" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000005", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : 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Added on behalf of OBI at March 2010 workshop." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" + } ] + }, + "type" : "CLASS", + "lbl" : "handedness" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000022", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete gametophytic compatability" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002202", + "meta" : { + "definition" : { + "val" : "Handedness where the organism preferentially uses the left hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot.", + "xrefs" : [ "birnlex:2038" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-22T05:49:06Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" + } ] + }, + "type" : "CLASS", + "lbl" : "left handedness" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000021", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to harmonious coexistence.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Needs redefined or obsoleted. Is this the same as genetic incompatibility? Moved to organismal quality." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "compatibility" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001355", + "meta" : { + "definition" : { + "val" : "A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001857" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "convex" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000024", + "meta" : { + 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a substance by virtue of the ease with which the substance can be changed into a gaseous state.", + "xrefs" : [ "PATOC:JH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-15T04:38:02Z" + } ] + }, + "type" : "CLASS", + "lbl" : "vaporizability" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001353", + "meta" : { + "definition" : { + "val" : "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given volume.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Mass_density" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", 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"pred" : "hasRelatedSynonym", + "val" : "Ubiquitylation", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T02:00:37Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + } ] + }, + "type" : "CLASS", + "lbl" : "ubiquinated" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001369", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a colony by virtue of the bearer's appearing above the medium surface with terraced edges.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "raised" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000037", + "meta" : { + "definition" : { + "val" : "A physical quality inhering in a bearer by virtue of the bearer's density, firmness, or viscosity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "firmness", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "consistency" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000036", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete 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"http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete gel consistency" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002215", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having the shape of a scythe or sickle.", + "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/falciform" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hooked", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "scythe-shaped", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "unciform", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "sickle-shaped", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "uncinate", + "xrefs" : [ ] + }, 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"val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "demyelinated" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002219", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer that is shaped in the form of a fan.", + "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/fan-shaped" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "fan-like", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-09T01:43:42Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "fan-shaped" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001361", + "meta" : { + "definition" : { + "val" : "A texture 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"quality" + } ] + }, + "type" : "CLASS", + "lbl" : "coiling" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001310", + "meta" : { + "definition" : { + "val" : "A duration quality of a process inhering in a bearer by virtue of the bearer's duration of exhibition of thermal energy.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: obsolete? I don't know what this means." + } ] + }, + "type" : "CLASS", + "lbl" : "duration of temperature" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001795", + "meta" : { + "definition" : { + "val" : "A coiling which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high coiling", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001796" + } ] + }, + "type" : "CLASS", + "lbl" : "increased coiling" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000461", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#abnormal_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "average", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000460" + } ] + }, + "type" : "CLASS", + "lbl" : "normal" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001311", + "meta" : { + "definition" : { + "val" : "A duration of temperature which is lesser relative to the normal or average enduring or continuing in time.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001312" + } ] + }, + "type" : "CLASS", + "lbl" : "decreased duration of temperature" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001792", + "meta" : { + "definition" : { + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located on left side of from the a another entity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "left side of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000464", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of not being clearly visible.", + "xrefs" : [ "thefreedictionary:thefreedictionary" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "faint", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000463" + } ] + }, + "type" : "CLASS", + "lbl" : "inconspicuous" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000463", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of being clearly visible.", + "xrefs" : [ "thefreedictionary:thefreedictionary" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "distinct", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000464" + } ] + }, + "type" : "CLASS", + "lbl" : "conspicuous" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001793", + "meta" : { + "definition" : { + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located on right side of a another entity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "right side of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000477", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete good value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001325", + "meta" : { + "definition" : { + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's having equal proportion around a central point or axis.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "centric", + "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0002-2908-3327" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "radial symmetry" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001326", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete left-right symmetry" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000476", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete bad value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000479", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete regulation value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001323", + "meta" : { + "definition" : { + "val" : "A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Area" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "area" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002222", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "temporally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001324", + "meta" : { + "definition" : { + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being symmetric about a plane running from its frontal end to its caudal end (head to tail), and has nearly identical right and left halves.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Bilateral_symmetry" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "left-right symmetry", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "pennate", + "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0002-2908-3327" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "bilateral symmetry" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000478", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete poor value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001329", + "meta" : { + "definition" : { + "val" : "A flavor quality inhering in a bearer by virtue of the bearer's having flavour.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "flavourful" + }, { + "id" : "http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to", + "meta" : { + "definition" : { + "val" : "q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.", + "xrefs" : [ "PATOC:CJM" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "PROPERTY", + "lbl" : "different_in_magnitude_relative_to" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001327", + "meta" : { + "definition" : { + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by only one longitudinal plane passing through the axis.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "zygomorphic" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001328", + "meta" : { + "definition" : { + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by any longitudinal plane passing through the axis.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "actinomorphic" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000471", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete low" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000470", + "meta" : { + "definition" : { + "val" : "An amount which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "present in greater numbers in organism", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "accessory", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "increased", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "supernumerary", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "increased number", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001997" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000650" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000420" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "increased amount" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000473", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative_quality value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001321", + "meta" : { + "definition" : { + "val" : "An angle which is 90 degrees to another entity.", + "xrefs" : [ "thesaurus.math:thesaurus.math" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "right angle to" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000472", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete quality value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001322", + "meta" : { + "definition" : { + "val" : "An angle which is 180 degrees to another entity.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: decide on correct parentage." + } ] + }, + "type" : "CLASS", + "lbl" : "straight angle to" + 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One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality." + } ] + }, + "type" : "PROPERTY", + "lbl" : "reciprocal_of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000418", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative number value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001749", + "meta" : { + "definition" : { + "val" : "A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth.", + "xrefs" : [ "PATOC:mh" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pedomorphic growth", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "hypoplastic growth", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001752" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "paedomorphic growth" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0020001", + "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in an individual based upon genotypic composition that confers the capability for an organism to differentiate male gonads.", + "xrefs" : [ "PATOC:MAH" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XY, though abnormal XXY and XYY would also result in a male phenotypic outcome." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "mah" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "male genotypic sex" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0020002", + "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in an individual or a population based upon genotypic composition that confers the capability for an organism to differentiate female gonads.", + "xrefs" : [ "PATOC:MAH" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "mah" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XX, though abnormal X0 and XXX would also result in a female phenotypic outcome." + } ] + }, + "type" : "CLASS", + "lbl" : "female genotypic sex" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000895", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete f1 fertility value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000411", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "rounded", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "round", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "circular" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001743", + "meta" : { + "definition" : { + "val" : "A radioactivity which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low radioactivity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001742" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "decreased radioactivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000410", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having leaflets or leaflets-like structures on each side of a common axis.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "feather-like", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "of a leaf shape", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "pinnate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001744", + "meta" : { + "definition" : { + "val" : "A radiation quality inhering in a bearer by virtue of what the bearer receives as a result of being exposed to ionizing radiation.", + "xrefs" : [ "hps:hps" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "radiation exposure" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000894", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete cytoplasmic sterility value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000413", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having an equal-sided rectangular form.", + "xrefs" : [ "answers.com:answers.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "square" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001741", + "meta" : { + "definition" : { + "val" : "A radiation quality inhering in bearer by virtue of the bearer's exhibiting or being caused by radioactivity.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "radioactive" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000897", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete germ line dependent fertility value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001742", + "meta" : { + "definition" : { + "val" : "A radioactivity which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high radioactivity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001743" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "increased radioactivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000896", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete f2 fertility value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000412", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000585" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000415", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals).", + "xrefs" : [ "WordNet:WordNet" ] + }, 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"http://purl.obolibrary.org/obo/PATO_0000292", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete mobility value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000295", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative activity value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002470", + "meta" : { + "definition" : { + "val" : "A morphological quality between two bearers inhering that one bearer is subject to change the nature, function, or condition of itself to become the other.", + "xrefs" : [ "PATOC:LC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T12:01:57Z" + } ] + }, + "type" : "CLASS", + "lbl" : "transformed to" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000294", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete process value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002471", + "meta" : { + "definition" : { + "val" : "A physical quality inhering in a bearer by 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"lbl" : "obsolete immunoglobulin concentration value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001145", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete ig m concentration value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002476", + "meta" : { + "definition" : { + "val" : "A position quality inhering in a bearer by virtue of the bearer's forming the end of another entity.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T12:18:08Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "terminal" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000297", + "meta" : { + "definition" : { + "val" : "A quality of a process which ends earlier than the natural end time or reference process.", + "xrefs" : [ "PATOC:LC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "abolished", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "incomplete", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: the definition is incorrect. See absent." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001508" + } ] + }, + "type" : "CLASS", + "lbl" : "arrested" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002477", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's disposition to breaks without significant deformation (strain) when subjected to stress.", + "xrefs" : [ "wikipedia:http://en.wikipedia.org/wiki/Brittleness" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T12:25:03Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "brittle" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001146", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete resistance value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000296", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete speed value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002474", + "meta" : { + "definition" : { + "val" : "A flavor quality inhering in a bearer by virtue of the bearer's having an acrid, sharp, or disagreeable flavor.", + "xrefs" : [ 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"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T12:17:41Z" + } ] + }, + "type" : "CLASS", + "lbl" : "subterminal" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001144", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete ig g concentration value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000298", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete not arrested value" + }, { + "id" : 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Or: a shape with cavities. Contrast: concave.", + "xrefs" : [ "PATOC:CJM" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "xrefs" : [ { + "val" : "Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002007" + } ] + }, + "type" : "CLASS", + "lbl" : "concave 3-D shape" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002005", + "meta" : { + "definition" : { + "val" : "Surface shape that refers to the inward or outward curvature of the surface.", + "xrefs" : [ "PATOC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : 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+ "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative concentration value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001159", + "meta" : { + "definition" : { + "val" : "A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "concentrated" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002006", + "meta" : { + "definition" : { + "val" : "A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity.", + "xrefs" : [ "PATOC:CJM" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "2-D projection", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "cross-sectional", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "2-D shape" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002009", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity.", + "xrefs" : [ "PATOC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "branchiness" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002483", + "meta" : { + "definition" : { + "val" : "Positional quality in which an entity is located outside of another entity.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-30T06:06:27Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "external to" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001152", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "susceptible", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001153" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "susceptible toward" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002000", + "meta" : { + "definition" : { + "val" : "A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity.", + "xrefs" : [ "PATOC:CJM" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "xrefs" : [ { + "val" : "OBO_REL:lacks_part" + } ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "lacks all physical parts of type", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Example: [E=organism Q=lacks_all_parts_of_type E2=Wing] - applies to an organism. A relational quality in which the bearer entity has no parts of the specified type. The bearer of this quality has_part = 0 of the indicated entity type, where a comparable organism usually has at least 1 part of the same type. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e lacks all parts of type X at time t, then there exists no instances x of X at t such that x part_of e that has no wings, where wings are normally present in that organism type. In OWL this is equivalent to a restriction on the OBO_REL:has_part relation with cardinality=0, i.e has_part 0 E2." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001557" + } ] + }, + "type" : "CLASS", + "lbl" : "lacks all parts of type" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002484", + "meta" : { + "definition" : { + "val" : "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of an inverted letter V.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "chevron shaped", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-10-10T03:55:44Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "inverted-V shaped" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001153", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus.", + "xrefs" : [ "PATO:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "insusceptible", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001152" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "insusceptible toward" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001150", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute susceptibility value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002481", + "meta" : { + "definition" : { + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a slanting direction or position : neither perpendicular nor parallel.", + "xrefs" : [ "merriam-wester:http://www.merriam-webster.com/dictionary/oblique" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-30T05:49:50Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "oblique orientation" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002482", + "meta" : { + "definition" : { + "val" : "Shape quality inhering in a bearer by virtue of the bearer exhibiting a narrow and elongate opening.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-30T05:51:39Z" + } ] + }, + "type" : "CLASS", + "lbl" : "slit-like" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001151", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative susceptibility value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002487", + "meta" : { + "definition" : { + "val" : "A quality inhering in a process by virtue of that process having exactly one organism as a participant.", + "xrefs" : [ "PATOC:DS" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-10-10T04:09:51Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "single organismal process quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001156", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative concentration" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002003", + "meta" : { + "definition" : { + "val" : "A quality that inheres in an entire population or part of a population.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "population quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001157", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute concentration value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002004", + "meta" : { + "definition" : { + "val" : "A shape that inheres in a part of a surface. An object can have different surface shapes on different parts of its surface.", + "xrefs" : [ "PATOC:CJM" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Consider PATO:0001925" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete surface shape" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002488", + "meta" : { + "definition" : { + "val" : "Overlap with quality inhering in a bearer by virtue of the bearer's being positioned over another entity so as to cover some portion of it.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-10-10T04:12:22Z" + } ] + }, + "type" : "CLASS", + "lbl" : "overlapping" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002001", + "meta" : { + "definition" : { + "val" : "The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly.", + "xrefs" : [ "PATOC:CJM" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "has fewer physical parts of type", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "has decreased number of", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "decreased number of", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002002" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001569" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "has fewer parts of type" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002485", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's possessing two sides that are at the same continuous distance relative to each other.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-10-10T03:58:37Z" + } ] + }, + "type" : "CLASS", + "lbl" : "parallel-sided" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001154", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002364" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "elongated" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002002", + "meta" : { + "definition" : { + "val" : "The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part.", + "xrefs" : [ "PATOC:CJM" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "increased number of", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "having extra physical parts", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "has increased number of", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "has extra parts of", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "having supernumerary physical parts", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002001" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001560" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "In polydactyly, the bearer of the quality is the hand, and the entity type being counted is 'finger'. In EQ syntax, E=hand, Q= E2=finger." + } ] + }, + "type" : "CLASS", + "lbl" : "has extra parts of type" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002486", + "meta" : { + "definition" : { + "val" : "A quality inhering in a process by virtue of that process having two or more organisms as participants.", + "xrefs" : [ "PATOC:DS" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-10-10T04:08:44Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "multi-organismal process quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001155", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute concentration" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002480", + "meta" : { + "definition" : { + "val" : "A quality inhering in an bearer by virtue of the bearer's possessing only minor levels of ossification.", + "xrefs" : [ "PATOC:AD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-30T05:47:07Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "poorly ossified" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002018", + "meta" : { + "synonyms" : [ { + "pred" : 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"basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000070" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002016", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "magnitude" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002017", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high magnitude", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002018" + } ] + }, + "type" : "CLASS", + "lbl" : "increased magnitude" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002494", + "meta" : { + "definition" : { + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distally.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "distally directed", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-10-10T05:14:37Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002495" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "distal orientation" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001163", + "meta" : { + "definition" : { + "val" : "A concentration which is lower relative to the normal or average.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low concentration", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001162" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "decreased concentration" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002010", + "meta" : { + "definition" : { + "val" : "A texture quality inhering in a bearer by virtue of the bearer's bing full of small openings or 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which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "density", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "mass density" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002340", + "meta" : { + "definition" : { + "val" : "A quality of being minutely hispid.", + "xrefs" : [ "PATOC:DD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-01-31T02:53:21Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "hispidulous" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001493", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001494" + } ] + }, + "type" : "CLASS", + "lbl" : "hypertrophic growth" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000161", + "meta" : { + "definition" : { + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.", + "xrefs" : [ 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"type" : "CLASS", + "lbl" : "normal tolerance to" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002341", + "meta" : { + "definition" : { + "val" : "A quality of being covered with short, dense, matted hairs.", + "xrefs" : [ "thefreedictionary:www.thefreedictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-01-31T02:55:56Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "tomentose" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000160", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", 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"synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "neotenic growth", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "neotenous growth" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000163", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative rate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000162", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute rate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0045072", + "meta" : { + "definition" : { + "val" : "A turgor which is relatively normal or average", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + } ] + }, + "type" : "CLASS", + "lbl" : "normal turgor" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001492", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term will be 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: "A size quality which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "great", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "enlarged", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "expanded", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "large", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "big", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001202" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000587" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "increased size" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000102", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete macronutrient sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000589", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute thickness value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001433", + "meta" : { + "definition" : { + "val" : "A quality of a single process which describes the growth of an organism, structure, or group of organisms.", + "xrefs" : [ "PATOC:MAH" ] + }, + "subsets" : [ 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"definition" : { + "val" : "An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "reproductive quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000588", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's being a remnant structure from earlier development or evolution.", + "xrefs" : [ "PATOC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "May be part of an animal (such as an organ or bone) that is no longer used by the species and has therefore become smaller or less developed." + }, { + "pred" : 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virtue of the bearer's elastic tension that facilitate response to stimuli.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "tone", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: we need a clearer differentium between this and contractility - or merge?" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001498" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "tonicity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000106", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : 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See also GO:0031589 \"cell-substrate adhesion\"." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "adhesivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000583", + "meta" : { + "definition" : { + "val" : "A weight which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low weight", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "light weight", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000582" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "decreased weight" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000582", + "meta" : { + "definition" : { + "val" : "A weight which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high weight", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "heavy", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000583" + } ] + }, + "type" : "CLASS", + "lbl" : "increased weight" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001432", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's decomposition into component parts.", + "xrefs" : [ "Medical-dictionary:Medical-dictionary" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : 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: "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "hypotrophic" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000101", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete soil nutrient sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000584", + "meta" : { + "definition" : { + "val" : "An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ).", + "xrefs" : [ "PATOC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "hypertrophy", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : 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"http://purl.obolibrary.org/obo/BFO_0000050", + "meta" : { + "definition" : { + "val" : "a core relation that holds between a part and its whole", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "BFO:0000050" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "is part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this day is part of this year (occurrent parthood)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "part_of" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my brain is part of my body (continuant parthood, two material entities)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." + } ] + }, + "type" : "PROPERTY", + "lbl" : "part of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000085", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "sensitivity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "sensitivity toward" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000088", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute disease sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002267", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-05T12:34:31Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "edge shape" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002268", + "meta" : { + "definition" : { + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being located in a position equidistant from edges.", + "xrefs" : [ "PATOC:OREGON" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-05T01:09:32Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "centered" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000087", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete disease sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002265", + "meta" : { + "definition" : { + "val" : "A behavioral quality of a process inhering in a bearer by virtue of the bearer's disposition to exhibit marked activity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-21T06:56:58Z" + } ] + }, + "type" : "CLASS", + "lbl" : "behavioural activity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000089", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative disease sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002266", + "meta" : { + "definition" : { + "val" : "A shape that inheres in a 3 dimensional entity.", + "xrefs" : [ "PATOC:OREGON" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-05T12:31:16Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + } ] + }, + "type" : "CLASS", + "lbl" : "3-D shape" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000051", + "meta" : { + "definition" : { + "val" : "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2.", + "xrefs" : [ "PATOC:CJM" ] + }, + "xrefs" : [ { + "val" : "BFO:0000051" + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this year has part this day (occurrent parthood)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_part" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_part" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my body has part my brain (continuant parthood, two material entities)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has part" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has_part" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000080", + "meta" : { + "definition" : { + "val" : "A physical quality of a process inhering in a bearer by virtue of the size of the bearer's maximum displacement from the 'normal' position, when periodic motion is taking place.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "amplitude" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002260", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's being partially upright in position or posture.", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "semi upright", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-08T03:27:21Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + } ] + }, + "type" : "CLASS", + "lbl" : "semi erect" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000082", + "meta" : { + "definition" : { + "val" : "A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm.", + "xrefs" : [ "reference.com:reference.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "persistence" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000081", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001309" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002274", + "meta" : { + "definition" : { + "val" : "Multicolored quality inhering in a bearer by virtue of the bearer's being dappled with spots, patches, or blotches of different colors.", + "xrefs" : [ "url:http://www.oed.com/" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-11-16T11:22:57Z" + } ] + }, + "type" : "CLASS", + "lbl" : "mottled" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000095", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute drug sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002275", + "meta" : { + "definition" : { + "val" : "A color pattern quality inhering in a bearer by virtue of the bearer's color pattern in which light and dark colors (for example white and black) are codistributed to create a visual impression.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-11-16T11:24:15Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + } ] + }, + "type" : "CLASS", + "lbl" : "high contrast color pattern" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000094", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete drug sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000097", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete herbicide sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002272", + "meta" : { + "definition" : { + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located at the same continuous distance relative to another object.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-26T02:07:42Z" + } ] + }, + "type" : "CLASS", + "lbl" : "parallel to" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002273", + "meta" : { + "definition" : { + "val" : "Multicolored quality inhering in a bearer by virtue of the bearer's being colored with a variegated pattern resembling marble,.", + "xrefs" : [ "url:http://www.oed.com/" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-11-16T11:17:32Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + } ] + }, + "type" : "CLASS", + "lbl" : "marbled" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000096", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative drug sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002278", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's participating in a joint with another entity.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-01-20T05:39:18Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + } ] + }, + "type" : "CLASS", + "lbl" : "articulated with" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000099", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete plant growth hormone sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002279", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being strongly articulated with another entity.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-01-20T05:39:59Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "tightly articulated with" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000098", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete insecticide sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002276", + "meta" : { + "definition" : { + "val" : "A color pattern inhering in a bearer by virtue of bearer's exhibiting vertical bars of one hue or degree of saturation crossing another.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-11-16T11:30:40Z" + } ] + }, + "type" : "CLASS", + "lbl" : "barred" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002277", + "meta" : { + "definition" : { + "val" : "A quality of certain surfaces which appear to change colour as the angle of view changes.", + "xrefs" : [ "url:http://en.wikipedia.org/wiki/Iridescence" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-12-12T12:37:41Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + } ] + }, + "type" : "CLASS", + "lbl" : "iridescent" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000091", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete stress sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002270", + "meta" : { + "definition" : { + "val" : "An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "accumulated", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002271" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-26T02:00:20Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "increased accumulation" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000040", + "meta" : { + "definition" : { + "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "material entity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000090", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002271", + "meta" : { + "definition" : { + "val" : "An accumulation which is relative low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002270" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-26T02:04:45Z" + } ] + }, + "type" : "CLASS", + "lbl" : "decreased accumulation" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000093", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete chemical sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000092", + "meta" : { 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"http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-03-10T09:07:57Z" + } ] + }, + "type" : "CLASS", + "lbl" : "increased branchiness" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002286", + "meta" : { + "definition" : { + "val" : "Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity.", + "xrefs" : [ "PATOC:CVS" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-03-10T09:08:37Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002285" + } ] + }, + "type" : "CLASS", + "lbl" : "decreased branchiness" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002283", + "meta" : { + "definition" : { + "val" : "A mobility which is relative low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-03-09T09:16:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002282" + } ] + }, + "type" : "CLASS", + "lbl" : "decreased mobility" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002284", + "meta" : { + "definition" : { + "val" : "A physical quality that pertains by virtue of a pulling force that is directed away from the bearer and attempts to stretch or elongate the bearer.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-03-10T08:41:21Z" + } ] + }, + "type" : "CLASS", + "lbl" : "tension" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002289", + "meta" : { + "definition" : { + "val" : "A hairy quality inhering in a bearer by virtue of the bearer's being covered with setae.", + "xrefs" : [ "ISBN:0913424137" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + 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A bristle is a type of seta." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "setose" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002287", + "meta" : { + "definition" : { + "val" : "An elasticity which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-03-30T11:50:21Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002288" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "increased elasticity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002288", + "meta" : { + "definition" : { + "val" : "An elasticity which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-03-30T11:50:39Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002287" + } ] + }, + "type" : "CLASS", + "lbl" : "decreased elasticity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002281", + "meta" : { + "definition" : { + "val" : "A cuscpidate quality inhering in a bearer by virtue of the bearer possessing two cusps.", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "bicuspid", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-02-07T03:13:18Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "biscupidate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002282", + "meta" : { + "definition" : { + "val" : "A mobility which is relative high.", + "xrefs" : [ "PATO:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-03-09T09:16:03Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : 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"areolate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002298", + "meta" : { + "definition" : { + "val" : "A cellular motility which is higher relative to the normal or average.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002297" + } ] + }, + "type" : "CLASS", + "lbl" : "increased cellular motility" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002299", + "meta" : { + "definition" : { + "val" : "A cylindrical shape that is hollow.", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "tube-shaped", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "tubulate", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "tube 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"http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "occurs_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "occurs in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" + } ] + }, + "type" : "PROPERTY", + "lbl" : "occurs in" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "meta" : { + "definition" : { + "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "site of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "contains process" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000062", + "meta" : { + "definition" : { + "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is preceded by" + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "preceded by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "preceded_by" + } ] + }, + "type" : "PROPERTY", + "lbl" : "preceded by" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002292", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's underlying structure being capable of change.", + "xrefs" : [ "PATOC:WD" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "transient structure", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-05-03T03:01:59Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "For example, structures undergoing endochondral ossification change in composition from cartilaginous to ossified." + } ] + }, + "type" : "CLASS", + "lbl" : "transient" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002293", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's underlying structure not changing over time.", + "xrefs" : [ "PATOC:WD" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "permanent structure", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-05-03T03:03:50Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "permanent" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000063", + "meta" : { + "definition" : { + "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "precedes" + } ] + }, + "type" : "PROPERTY", + "lbl" : "precedes" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002290", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-04-18T05:11:33Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "aplastic/hypoplastic" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002291", + "meta" : { + "definition" : { + "val" : "Absence of a tissue or organ due to failure to develop.", + "xrefs" : [ "PATO:GVG" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-04-18T05:17:34Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "agenesis" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000015", + "meta" : { + "definition" : { + "val" : "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "process" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000048", + "meta" : { + "definition" : { + "val" : "A physical quality inhering in a bearer by virtue of the bearer's resistance to pressure, being broken, or pierced", + "xrefs" : [ "merriam-webster:merriam-webster" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "toughness", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "impenetrability", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "hardness" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002227", + "meta" : { + "definition" : { + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a cup.", + "xrefs" : [ "url:http://www.thefreedictionary.com/cup-shaped" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "cup-like", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-13T04:29:32Z" + } ] + }, + "type" : "CLASS", + "lbl" : "cup-shaped" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002228", + "meta" : { + "definition" : { + "val" : "A tapered shape quality inhering in a bearer by virtue of the bearer's tapering gradually to a sharp point.", + "xrefs" : [ "url:http://www.thefreedictionary.com/acuminate" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-15T09:03:18Z" + } ] + }, + "type" : "CLASS", + "lbl" : "acuminate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000047", + "meta" : { + "definition" : { + "val" : "An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.", + "xrefs" : [ "MGED:MGED" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "biological sex" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001378", + "meta" : { + "definition" : { + "val" : "A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from a single species.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Autopolyploid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "autopolyploid" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002225", + "meta" : { + "definition" : { + "val" : "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter L.", + "xrefs" : [ "PATOC:JE" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-13T04:14:59Z" + } ] + }, + "type" : "CLASS", + "lbl" : "L-shaped" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002226", + "meta" : { + "definition" : { + "val" : "A cylindrical shape quality inhering in a bearer by virtue of the bearer's being imperfectly cylindrical or approximately cylindrical.", + "xrefs" : [ "url:http://www.thefreedictionary.com/Subcylindrical" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-13T04:22:30Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + } ] + }, + "type" : "CLASS", + "lbl" : "subcylindrical" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000049", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's possessing or displaying a distinctive feature in type or degree or effect or force.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "intensity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001379", + "meta" : { + "definition" : { + "val" : "A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from different species.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Allopolyploidy" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "allopolyploidy" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002229", + "meta" : { + "definition" : { + "val" : "A quadrangular shape quality inhering in a bearer by virtue of the bearer's being approximately rectangular.", + "xrefs" : [ "url:http://dictionary.reference.com/browse/subrectangular?qsrc=2446&o=100074" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-19T12:18:57Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + } ] + }, + "type" : "CLASS", + "lbl" : "subrectangular" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001372", + "meta" : { + "definition" : { + "val" : "A physical quality that inheres in propagating wave (light or sound) virtue of the bearer's change in direction when passing from one medium to another.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "refractivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000040", + "meta" : { + "definition" : { + "val" : "A quality that is the extent of space between two entities.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "distance" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001373", + "meta" : { + "definition" : { + "val" : "A reflectivity quality inhering in a bearer by virtue of the bearer's reflecting lots of light.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "glossy", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "shiny", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "glistening" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002220", + "meta" : { + "definition" : { + "val" : "A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group.", + "xrefs" : [ "wikipedia:en.wikipedia.org/wiki/Phosphorylated" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002263" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-09T01:50:14Z" + } ] + }, + "type" : "CLASS", + "lbl" : "phosphorylated" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000042", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative distance" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001370", + "meta" : { + "definition" : { + "val" : "A coating quality which is sticky or clammy.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "viscid" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000041", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolutedistance" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001371", + "meta" : { + "definition" : { + "val" : "A composition quality inhering in an bearer by virtue of the bearer's consistency of mucus.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "mucous", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "mucinous", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "mucoid" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001376", + "meta" : { + "definition" : { + "val" : "A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of unique homologous chromosomes.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Monoploid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "monoploid" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000044", + "meta" : { + "definition" : { + "val" : "A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/frequency" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "frequency" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002223", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's having reacted with oxygen, or been modified by oxidation (the reaction in which the atoms of an element lose electrons and the valence of the element increases).", + "xrefs" : [ "Wikipedia:http://en.wiktionary.org/wiki/oxidized" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-09T01:59:35Z" + } ] + }, + "type" : "CLASS", + "lbl" : "oxidized" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002224", + "meta" : { + "definition" : { + "val" : "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter V.", + "xrefs" : [ "PATOC:JE" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : 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"http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "self-renewal" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000065", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative percentage" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001399", + "meta" : { + "definition" : { + "val" : "A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers and extraembryonic cell types.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Totipotent" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "totipotent" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002246", + "meta" : { + "definition" : { + "val" : "A force which is relative low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "decreased force amplitude", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-04T11:13:13Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002245" + } ] + }, + "type" 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: "A trisomy quality inhering in a bearer when part of the bearer's extra chromosome is attached to one of the other chromosomes, or if one of the bearer's chromosomes has two copies of part of its chromosome.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Partial_trisomy" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "partial trisomy" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001391", + "meta" : { + "definition" : { + "val" : "A trisomy quality inhering in a bearer by virtue of the bearer's having extra chromosomal material in only some of it's cells.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "basicPropertyValues" : [ { + "pred" : 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{ + "sub" : "http://purl.obolibrary.org/obo/PATO_0002115", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000303", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000008" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001140", + "pred" : "is_a", + "obj" : "http://www.w3.org/2002/07/owl#Thing" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002361", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002360" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001521", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000080" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015003", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000578", + "pred" : "is_a", + "obj" : "http://www.w3.org/2002/07/owl#Thing" + }, { + "sub" : 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"http://purl.obolibrary.org/obo/RO_0002019", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/GO_0004872" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/pato#has_dividend_entity", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002334", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002434", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002479", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002215", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/pato#has_ratio_quality", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002018", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000062", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000063", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] + } ], + "propertyChainAxioms" : [ { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000066", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002566", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002411", "http://purl.obolibrary.org/obo/RO_0002233" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002430", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002428", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002211" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002479", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/BFO_0000066" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002449", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002630", "http://purl.obolibrary.org/obo/RO_0002333" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002429", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004035", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002305" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002448", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002211", "http://purl.obolibrary.org/obo/RO_0002333" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002131" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004034", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002304" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002216", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004031", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002432", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000066" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000062", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000062" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000063", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000063" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002596", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002211" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002450", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002629", "http://purl.obolibrary.org/obo/RO_0002333" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002597", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002566", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002411", "http://purl.obolibrary.org/obo/RO_0002333" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000066" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002598", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002314", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0000052", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002327", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002211", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002578", "http://purl.obolibrary.org/obo/RO_0002578" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002314", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002314", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002329", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002215" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004032", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0004047" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002263", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002411" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0000057" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004033", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0004046" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002428", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/RO_0002211" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002430", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002429", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002213", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002212", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002584", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002215" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002264", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002418" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002327", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002017" ] + } ] + } ] +} \ No newline at end of file diff --git a/pato-full.obo b/pato-full.obo new file mode 100644 index 00000000..dcf5b4e0 --- /dev/null +++ b/pato-full.obo @@ -0,0 +1,22539 @@ +format-version: 1.2 +data-version: pato/releases/2019-09-13/pato-full.owl +date: 07:02:2018 10:27 +saved-by: segerdel +auto-generated-by: OBO-Edit 2.3.1 +subsetdef: abnormal_slim "Abnormal/normal slim" +subsetdef: absent_slim "Absent/present slim" +subsetdef: attribute_slim "Attribute slim" +subsetdef: cell_quality "cell_quality" +subsetdef: disposition_slim "Disposition slim" +subsetdef: hpo_slim "Human phenotype slim" +subsetdef: mpath_slim "Pathology slim" +subsetdef: relational_slim "Relational slim: types of quality that require an additional entity in order to exist" +subsetdef: scalar_slim "Scalar slim" +subsetdef: value_slim "Value slim" +default-namespace: quality +ontology: pato/pato-full + +[Term] +id: BFO:0000002 +name: continuant +def: "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts." [] +disjoint_from: BFO:0000003 ! occurrent +relationship: part_of BFO:0000002 ! continuant + +[Term] +id: BFO:0000003 +name: occurrent +def: "An entity that has temporal parts and that happens, unfolds or develops through time." [] +relationship: part_of BFO:0000003 ! occurrent + +[Term] +id: BFO:0000004 +name: independent continuant +def: "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything." [] +is_a: BFO:0000002 ! continuant +disjoint_from: BFO:0000020 ! specifically dependent continuant +relationship: part_of BFO:0000004 ! independent continuant + +[Term] +id: BFO:0000015 +name: process +def: "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." [] +is_a: BFO:0000003 ! occurrent + +[Term] +id: BFO:0000020 +name: specifically dependent continuant +def: "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same." [] +is_a: BFO:0000002 ! continuant +relationship: part_of BFO:0000020 ! specifically dependent continuant + +[Term] +id: BFO:0000040 +name: material entity +def: "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time." [] +is_a: BFO:0000004 ! independent continuant + +[Term] +id: CARO:0000000 +name: anatomical entity +is_a: CARO:0030000 ! biological entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl + +[Term] +id: CARO:0000003 +name: connected anatomical structure +is_a: CARO:0000006 ! material anatomical entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl + +[Term] +id: CARO:0000006 +name: material anatomical entity +is_a: BFO:0000040 ! material entity +is_a: CARO:0000000 ! anatomical entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl + +[Term] +id: CARO:0000014 +name: cell part +is_a: CARO:0000003 ! connected anatomical structure +property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl +property_value: IAO:0000589 "cell part (CARO)" xsd:string + +[Term] +id: CARO:0001010 +name: organism or virus or viroid +is_a: BFO:0000040 ! material entity + +[Term] +id: CARO:0030000 +name: biological entity +is_a: BFO:0000004 ! independent continuant + +[Term] +id: CL:0000000 +name: cell +is_a: CARO:0000003 ! connected anatomical structure +property_value: IAO:0000412 http://purl.obolibrary.org/obo/cl.owl + +[Term] +id: GO:0003674 +name: molecular_function +is_a: BFO:0000015 ! process +property_value: IAO:0000589 "molecular process" xsd:string + +[Term] +id: GO:0003824 +name: catalytic activity +is_a: GO:0003674 ! molecular_function + +[Term] +id: GO:0005575 +name: cellular_component + +[Term] +id: GO:0005623 +name: cell +is_a: GO:0005575 ! cellular_component + +[Term] +id: GO:0005634 +name: nucleus +is_a: GO:0043231 ! intracellular membrane-bounded organelle +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl + +[Term] +id: GO:0005929 +name: cilium +is_a: GO:0043226 ! organelle +is_a: GO:0120025 ! plasma membrane bounded cell projection + +[Term] +id: GO:0008150 +name: biological_process +is_a: BFO:0000015 ! process + +[Term] +id: GO:0016301 +name: kinase activity +is_a: GO:0016772 ! transferase activity, transferring phosphorus-containing groups + +[Term] +id: GO:0016740 +name: transferase activity +is_a: GO:0003824 ! catalytic activity + +[Term] +id: GO:0016772 +name: transferase activity, transferring phosphorus-containing groups +is_a: GO:0016740 ! transferase activity + +[Term] +id: GO:0042995 +name: cell projection +is_a: GO:0044464 ! cell part + +[Term] +id: GO:0043226 +name: organelle +is_a: GO:0005575 ! cellular_component + +[Term] +id: GO:0043227 +name: membrane-bounded organelle +is_a: GO:0043226 ! organelle + +[Term] +id: GO:0043229 +name: intracellular organelle +is_a: GO:0043226 ! organelle +is_a: GO:0044424 ! intracellular part + +[Term] +id: GO:0043231 +name: intracellular membrane-bounded organelle +is_a: GO:0043227 ! membrane-bounded organelle +is_a: GO:0043229 ! intracellular organelle + +[Term] +id: GO:0044424 +name: intracellular part +is_a: GO:0044464 ! cell part + +[Term] +id: GO:0044464 +name: cell part +is_a: CARO:0000014 ! cell part +is_a: GO:0005575 ! cellular_component +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl + +[Term] +id: GO:0120025 +name: plasma membrane bounded cell projection +is_a: GO:0042995 ! cell projection + +[Term] +id: PATO:0000000 +name: obsolete pato +is_obsolete: true + +[Term] +id: PATO:0000001 +name: quality +alt_id: PATO:0000072 +def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" [PATOC:GVG] + +[Term] +id: PATO:0000002 +name: obsolete value +is_obsolete: true + +[Term] +id: PATO:0000003 +name: obsolete assay +is_obsolete: true + +[Term] +id: PATO:0000004 +name: mobility +def: "A quality of inhering in a bearer by virtue of the bearer's disposition to move freely." [PATOC:GVG] +comment: Should be defined using translocation. +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000005 +name: obsolete absolute activity +is_obsolete: true + +[Term] +id: PATO:0000006 +name: obsolete process +is_obsolete: true + +[Term] +id: PATO:0000007 +name: obsolete relative activity +is_obsolete: true + +[Term] +id: PATO:0000008 +name: speed +def: "A physical quality inhering in a bearer by virtue of the bearer's scalar absolute value of the rate of change of the bearer's position." [Wikipedia:http\://en.wikipedia.org/wiki/Velocity] +subset: attribute_slim +subset: scalar_slim +synonym: "velocity" RELATED [] +is_a: PATO:0001906 ! movement quality + +[Term] +id: PATO:0000009 +name: obsolete absolute speed +is_obsolete: true + +[Term] +id: PATO:0000010 +name: obsolete relative speed +is_obsolete: true + +[Term] +id: PATO:0000011 +name: age +def: "A time quality inhering in a bearer by virtue of how long the bearer has existed." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000165 ! time + +[Term] +id: PATO:0000012 +name: obsolete absolute age +is_obsolete: true + +[Term] +id: PATO:0000013 +name: obsolete relative age +is_obsolete: true + +[Term] +id: PATO:0000014 +name: color +alt_id: PATO:0000020 +def: "A composite chromatic quality composed of hue, saturation and intensity parts." [PATOC:GVG] +subset: attribute_slim +synonym: "colour" EXACT [] +synonym: "relative color" EXACT [] +is_a: PATO:0000051 ! morphology +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0000015 +name: color hue +def: "A chromatic scalar-circular quality inhering in an object that manifests in an observer by virtue of the dominant wavelength of the visible light; may be subject to fiat divisions, typically into 7 or 8 spectra." [PATOC:cjm] +subset: attribute_slim +is_a: PATO:0001301 ! chromatic property + +[Term] +id: PATO:0000016 +name: color brightness +def: "A scalar optical property that is the intensity, value or amount of perceived light." [PATOC:MAH] +comment: Color brightness refers to the intensity, lightness or value of the light present. Think of this as a dimmer switch. +subset: attribute_slim +synonym: "color intensity" EXACT [] +synonym: "color lightness" EXACT [] +synonym: "color value" EXACT [] +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0000017 +name: color saturation +def: "A scalar chromatic property that is the degree of purity of perceived light." [PATOC:GVG] +comment: Color saturation refers to the amount of white light or gray paint mixed in with the hue (single wavelength) and is a measure of color purity. +subset: attribute_slim +is_a: PATO:0001301 ! chromatic property + +[Term] +id: PATO:0000018 +name: fluorescence +def: "A luminous flux quality inhering in a bearer by virtue of the bearer's emitting longer wavelength light following the absorption of shorter wavelength radiation; fluorescence is common with aromatic compounds with several rings joined together." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001296 ! luminous flux + +[Term] +id: PATO:0000019 +name: color pattern +def: "A chromatic property that is the relative position of different hues or degrees of saturation." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0000021 +name: compatibility +def: "A quality inhering in a bearer by virtue of the bearer's disposition to harmonious coexistence." [PATOC:GVG] +comment: Needs redefined or obsoleted. Is this the same as genetic incompatibility? Moved to organismal quality. +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0000022 +name: obsolete gametophytic compatability +is_obsolete: true + +[Term] +id: PATO:0000023 +name: obsolete relative compatability +is_obsolete: true + +[Term] +id: PATO:0000024 +name: obsolete sporophytic compatability +is_obsolete: true + +[Term] +id: PATO:0000025 +name: composition +alt_id: PATO:0002015 +def: "A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts." [PATOC:GVG] +comment: For example calcium composition (which may inhere in bone), haemoglobin composition (which may inhere in blood). +subset: attribute_slim +subset: scalar_slim +synonym: "composed of" EXACT [] +synonym: "compositionality" EXACT [] +synonym: "content" EXACT [] +synonym: "structure, composition" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000026 +name: obsolete carbohydrate composition +is_obsolete: true + +[Term] +id: PATO:0000027 +name: obsolete electrolyte composition +is_obsolete: true + +[Term] +id: PATO:0000028 +name: obsolete macromolecular composition +is_obsolete: true + +[Term] +id: PATO:0000029 +name: obsolete protein composition +is_obsolete: true + +[Term] +id: PATO:0000030 +name: obsolete enzyme composition +is_obsolete: true + +[Term] +id: PATO:0000031 +name: obsolete metabolite composition +is_obsolete: true + +[Term] +id: PATO:0000032 +name: obsolete secondary product composition +is_obsolete: true + +[Term] +id: PATO:0000033 +name: concentration of +def: "A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance." [Wikipedia:http\://en.wikipedia.org/wiki/concentration] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +synonym: "concentration" EXACT [] +is_a: PATO:0002182 ! molecular quality + +[Term] +id: PATO:0000034 +name: obsolete protein concentration +is_obsolete: true + +[Term] +id: PATO:0000035 +name: obsolete carbohydrate concentration +is_obsolete: true + +[Term] +id: PATO:0000036 +name: obsolete water content +is_obsolete: true + +[Term] +id: PATO:0000037 +name: consistency +def: "A physical quality inhering in a bearer by virtue of the bearer's density, firmness, or viscosity." [PATOC:GVG] +subset: attribute_slim +subset: mpath_slim +synonym: "firmness" RELATED [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000038 +name: obsolete gel consistency +is_obsolete: true + +[Term] +id: PATO:0000039 +name: direction +def: "A physical quality inhering in a bearer by virtue of the bearer's orientation in space." [thesaurus.maths:thesaurus.maths] +comment: TODO: consider merging with angular placement. +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000040 +name: distance +def: "A quality that is the extent of space between two entities." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000041 +name: obsolete absolutedistance +is_obsolete: true + +[Term] +id: PATO:0000042 +name: obsolete relative distance +is_obsolete: true + +[Term] +id: PATO:0000043 +name: flavor +def: "A quality of a physical entity inhering in a bearer by virtue of whether the bearer's molecules are being perceived by a taste and odorant receptors." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000044 +name: frequency +def: "A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time." [Wikipedia:http\://en.wikipedia.org/wiki/frequency] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0050000 ! rate of occurence + +[Term] +id: PATO:0000045 +name: obsolete absolute frequency +is_obsolete: true + +[Term] +id: PATO:0000046 +name: obsolete relative frequency +is_obsolete: true + +[Term] +id: PATO:0000047 +name: biological sex +def: "An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved." [MGED:MGED] +subset: attribute_slim +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000048 +name: hardness +def: "A physical quality inhering in a bearer by virtue of the bearer's resistance to pressure, being broken, or pierced" [merriam-webster:merriam-webster] +subset: attribute_slim +subset: disposition_slim +synonym: "impenetrability" RELATED [] +synonym: "toughness" RELATED [] +is_a: PATO:0001546 ! quality of a solid + +[Term] +id: PATO:0000049 +name: intensity +def: "A quality inhering in a bearer by virtue of the bearer's possessing or displaying a distinctive feature in type or degree or effect or force." [PATOC:GVG] +subset: attribute_slim +subset: hpo_slim +is_a: PATO:0000068 ! qualitative + +[Term] +id: PATO:0000050 +name: life span +def: "A time quality inhering in a bearer by virtue of the bearer's expected maximum age." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000165 ! time + +[Term] +id: PATO:0000051 +name: morphology +def: "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0000052 +name: shape +alt_id: PATO:0001647 +def: "A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc)." [PATOC:GVG] +comment: Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects. +subset: attribute_slim +synonym: "relational shape quality" EXACT [] +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000054 +name: obsolete absolute number +is_obsolete: true + +[Term] +id: PATO:0000055 +name: obsolete relative number +is_obsolete: true + +[Term] +id: PATO:0000056 +name: trophic quality +def: "An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth." [Wikipedia:http\://en.wikipedia.org/wiki/Trophic_level] +subset: attribute_slim +subset: disposition_slim +synonym: "nutritional quality" RELATED [] +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000057 +name: occurrence +alt_id: PATO:0000156 +alt_id: PATO:0000158 +def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence." [PATOC:GVG] +subset: attribute_slim +subset: hpo_slim +synonym: "incidence" EXACT [] +synonym: "temporal" BROAD [] +is_a: PATO:0002323 ! temporal distribution quality + +[Term] +id: PATO:0000058 +name: odor +def: "A physical quality inhering in a bearer by virtue of the bearer's molecules being are aerially dispersed and perceived by an odorant receptor." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000059 +name: obsolete parental quality +def: "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a parent." [WordNet:WordNet] +subset: attribute_slim +synonym: "parental type" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0000060 +name: spatial pattern +alt_id: PATO:0000132 +alt_id: PATO:0001565 +def: "A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts." [PATOC:GVG] +subset: attribute_slim +subset: hpo_slim +synonym: "distribution" EXACT [] +synonym: "pattern" RELATED [] +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000061 +name: obsolete relative pattern +is_obsolete: true + +[Term] +id: PATO:0000062 +name: sleep pattern +def: "A sleep quality defined by the mathematic properties of the relative time frames of the sleep cycle." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001530 ! behavioral quality of a process + +[Term] +id: PATO:0000063 +name: obsolete percentage +is_obsolete: true + +[Term] +id: PATO:0000064 +name: obsolete absolute percentage +is_obsolete: true + +[Term] +id: PATO:0000065 +name: obsolete relative percentage +is_obsolete: true + +[Term] +id: PATO:0000066 +name: pilosity +def: "A texture quality inhering in a bearer by virtue of the bearer's having hair or bristles." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0000067 +name: obsolete relative pilosity +is_obsolete: true + +[Term] +id: PATO:0000068 +name: qualitative +comment: TODO: define this or obsolete it and move children somewhere else. +is_a: PATO:0000001 ! quality + +[Term] +id: PATO:0000069 +name: deviation(from_normal) +def: "A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000068 ! qualitative + +[Term] +id: PATO:0000070 +name: amount +alt_id: PATO:0000053 +alt_id: PATO:0000071 +alt_id: PATO:0001169 +alt_id: PATO:0001226 +def: "The number of entities of this type that are part of the whole organism." [PATOC:GVG] +comment: This term was originally named "presence". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10. +subset: attribute_slim +synonym: "count in organism" RELATED [] +synonym: "number" RELATED [] +synonym: "presence" RELATED [] +synonym: "presence or absence in organism" EXACT [] +synonym: "quantitative" EXACT [] +is_a: PATO:0000068 ! qualitative +relationship: reciprocal_of PATO:0001555 ! has number of + +[Term] +id: PATO:0000073 +name: obsolete relative_quality +is_obsolete: true + +[Term] +id: PATO:0000074 +name: obsolete shattering +is_obsolete: true + +[Term] +id: PATO:0000075 +name: obsolete threshability +is_obsolete: true + +[Term] +id: PATO:0000076 +name: obsolete regulation +is_obsolete: true + +[Term] +id: PATO:0000077 +name: response to +def: "A quality inhering in a bearer by virtue of the whether the bearer's disposition to react to a stimulus or an agent." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +subset: scalar_slim +synonym: "reactivity" RELATED [GOC:CJM] +synonym: "response" RELATED [] +synonym: "responsivity" RELATED [] +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000078 +name: rhythm quality +def: "A quality of a single process inhering in a bearer by virtue of the bearer's movement or variation characterized by the regular recurrence or alternation of different quantities or conditions." [answers.com:answers.com] +subset: attribute_slim +is_a: PATO:0002323 ! temporal distribution quality + +[Term] +id: PATO:0000079 +name: obsolete absolute rhythym +is_obsolete: true + +[Term] +id: PATO:0000080 +name: amplitude +def: "A physical quality of a process inhering in a bearer by virtue of the size of the bearer's maximum displacement from the 'normal' position, when periodic motion is taking place." [thesaurus.maths:thesaurus.maths] +subset: attribute_slim +is_a: PATO:0002062 ! physical quality of a process + +[Term] +id: PATO:0000082 +name: persistence +def: "A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm." [reference.com:reference.com] +subset: attribute_slim +is_a: PATO:0000078 ! rhythm quality + +[Term] +id: PATO:0000083 +name: phase +def: "A quality that exists by virtue of being a particular point in the time of a cycle." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0002323 ! temporal distribution quality + +[Term] +id: PATO:0000084 +name: obsolete relative rhythym +is_obsolete: true + +[Term] +id: PATO:0000085 +name: sensitivity toward +def: "A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "sensitivity" EXACT [] +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000086 +name: obsolete absolute sensitivity +is_obsolete: true + +[Term] +id: PATO:0000087 +name: obsolete disease sensitivity +is_obsolete: true + +[Term] +id: PATO:0000088 +name: obsolete absolute disease sensitivity +is_obsolete: true + +[Term] +id: PATO:0000089 +name: obsolete relative disease sensitivity +is_obsolete: true + +[Term] +id: PATO:0000090 +name: obsolete relative sensitivity +is_obsolete: true + +[Term] +id: PATO:0000091 +name: obsolete stress sensitivity +is_obsolete: true + +[Term] +id: PATO:0000092 +name: obsolete abiotic stress sensitivity +is_obsolete: true + +[Term] +id: PATO:0000093 +name: obsolete chemical sensitivity +is_obsolete: true + +[Term] +id: PATO:0000094 +name: obsolete drug sensitivity +is_obsolete: true + +[Term] +id: PATO:0000095 +name: obsolete absolute drug sensitivity +is_obsolete: true + +[Term] +id: PATO:0000096 +name: obsolete relative drug sensitivity +is_obsolete: true + +[Term] +id: PATO:0000097 +name: obsolete herbicide sensitivity +is_obsolete: true + +[Term] +id: PATO:0000098 +name: obsolete insecticide sensitivity +is_obsolete: true + +[Term] +id: PATO:0000099 +name: obsolete plant growth hormone sensitivity +is_obsolete: true + +[Term] +id: PATO:0000100 +name: obsolete soil composition sensitivity +is_obsolete: true + +[Term] +id: PATO:0000101 +name: obsolete soil nutrient sensitivity +is_obsolete: true + +[Term] +id: PATO:0000102 +name: obsolete macronutrient sensitivity +is_obsolete: true + +[Term] +id: PATO:0000103 +name: obsolete micronutrient sensitivity +is_obsolete: true + +[Term] +id: PATO:0000104 +name: obsolete osmotic response sensitivity +is_obsolete: true + +[Term] +id: PATO:0000105 +name: obsolete p h sensitivity +is_obsolete: true + +[Term] +id: PATO:0000106 +name: obsolete acid sensitivity +is_obsolete: true + +[Term] +id: PATO:0000107 +name: obsolete alkali sensitivity +is_obsolete: true + +[Term] +id: PATO:0000108 +name: obsolete salt sensitivity +is_obsolete: true + +[Term] +id: PATO:0000109 +name: obsolete water sensitivity +is_obsolete: true + +[Term] +id: PATO:0000110 +name: obsolete drought sensitivity +is_obsolete: true + +[Term] +id: PATO:0000111 +name: obsolete flooding sensitivity +is_obsolete: true + +[Term] +id: PATO:0000112 +name: obsolete humidity sensitivity +is_obsolete: true + +[Term] +id: PATO:0000113 +name: obsolete radiation sensitivity +is_obsolete: true + +[Term] +id: PATO:0000114 +name: obsolete temperature sensitivity +is_obsolete: true + +[Term] +id: PATO:0000115 +name: obsolete absolute temperature sensitivity +is_obsolete: true + +[Term] +id: PATO:0000116 +name: obsolete relative temperature sensitivity +is_obsolete: true + +[Term] +id: PATO:0000117 +name: size +def: "A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000118 +name: obsolete absolute size +is_obsolete: true + +[Term] +id: PATO:0000119 +name: height +def: "A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0000120 +name: obsolete absolute height +is_obsolete: true + +[Term] +id: PATO:0000121 +name: obsolete relative height +is_obsolete: true + +[Term] +id: PATO:0000122 +name: length +def: "A 1-D extent quality which is equal to the distance between two points." [PATOC:GVG] +subset: attribute_slim +subset: mpath_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0000123 +name: obsolete absolute length +is_obsolete: true + +[Term] +id: PATO:0000124 +name: obsolete relative length +is_obsolete: true + +[Term] +id: PATO:0000125 +name: mass +def: "A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000126 +name: obsolete absolute mass +is_obsolete: true + +[Term] +id: PATO:0000127 +name: obsolete relative mass +is_obsolete: true + +[Term] +id: PATO:0000128 +name: weight +def: "A physical quality inhering in a bearer that has mass near a gravitational body." [Wikipedia:http\://en.wikipedia.org/wiki/Weight] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001035 ! force + +[Term] +id: PATO:0000129 +name: obsolete absolute weight +is_obsolete: true + +[Term] +id: PATO:0000130 +name: obsolete relative weight +is_obsolete: true + +[Term] +id: PATO:0000131 +name: obsolete relative size +is_obsolete: true + +[Term] +id: PATO:0000133 +name: orientation +alt_id: PATO:0000137 +def: "A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object." [PATOC:JE] +subset: attribute_slim +subset: relational_slim +synonym: "amount of rotation" RELATED [] +synonym: "angle" RELATED [] +synonym: "angular magnitude" RELATED [] +synonym: "angular placement" EXACT [] +synonym: "plane angle" RELATED [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000134 +name: obsolete absolute_angle +is_obsolete: true + +[Term] +id: PATO:0000135 +name: obsolete relative_angle +is_obsolete: true + +[Term] +id: PATO:0000136 +name: closure +def: "A morphological quality pertaining to the degree to which an object contains an opening, aperture, orifice or vent." [PATOC:CJM, PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000138 +name: obsolete absolute orientation +is_obsolete: true + +[Term] +id: PATO:0000139 +name: obsolete relative orientation +is_obsolete: true + +[Term] +id: PATO:0000140 +name: position +alt_id: PATO:0001032 +alt_id: PATO:0001631 +def: "A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity." [PATOC:GVG] +subset: attribute_slim +synonym: "location" EXACT [] +synonym: "placement" EXACT [] +synonym: "relational spatial quality" EXACT [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000141 +name: structure +alt_id: PATO:0001452 +def: "A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form." [PATOC:GVG] +subset: attribute_slim +synonym: "conformation" BROAD [VT:1000738] +synonym: "relational structural quality" EXACT [] +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000142 +name: obsolete substance +is_obsolete: true + +[Term] +id: PATO:0000143 +name: obsolete addictive substance +is_obsolete: true + +[Term] +id: PATO:0000144 +name: obsolete solid substance +comment: This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a solid; 'PATO:0001546' +is_obsolete: true + +[Term] +id: PATO:0000145 +name: obsolete liquid substance +comment: This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a liquid; PATO:0001548 ' +is_obsolete: true + +[Term] +id: PATO:0000146 +name: temperature +def: "A physical quality of the thermal energy of a system." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000147 +name: obsolete absolute temperature +is_obsolete: true + +[Term] +id: PATO:0000148 +name: obsolete body temperature +is_obsolete: true + +[Term] +id: PATO:0000149 +name: obsolete relative temperature +is_obsolete: true + +[Term] +id: PATO:0000150 +name: texture +def: "A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000151 +name: obsolete relative texture +is_obsolete: true + +[Term] +id: PATO:0000152 +name: threshold +def: "A quality inhering in a bearer by virtue of the bearer's sensitivity towards a fixed location or value where a change is observed; upper limit." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0000085 ! sensitivity toward + +[Term] +id: PATO:0000153 +name: obsolete absolute threshold +is_obsolete: true + +[Term] +id: PATO:0000154 +name: obsolete pain threshold +is_obsolete: true + +[Term] +id: PATO:0000155 +name: obsolete relative threshold +is_obsolete: true + +[Term] +id: PATO:0000157 +name: obsolete absolute temporal +is_obsolete: true + +[Term] +id: PATO:0000159 +name: obsolete absolute incidence +is_obsolete: true + +[Term] +id: PATO:0000160 +name: obsolete relative incidence +is_obsolete: true + +[Term] +id: PATO:0000161 +name: rate +def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time." [PATOC:melissa] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002062 ! physical quality of a process + +[Term] +id: PATO:0000162 +name: obsolete absolute rate +is_obsolete: true + +[Term] +id: PATO:0000163 +name: obsolete relative rate +is_obsolete: true + +[Term] +id: PATO:0000164 +name: obsolete relative temporal +is_obsolete: true + +[Term] +id: PATO:0000165 +name: time +def: "A quality in which events occur in sequence." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000166 +name: obsolete absolute time +is_obsolete: true + +[Term] +id: PATO:0000167 +name: obsolete bouts +def: "A limited, often assigned period of activity." [answers.com:answers.com] +subset: attribute_slim +is_obsolete: true + +[Term] +id: PATO:0000168 +name: obsolete relative time +is_obsolete: true + +[Term] +id: PATO:0000169 +name: viability +def: "An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000170 +name: obsolete yield +is_obsolete: true + +[Term] +id: PATO:0000171 +name: obsolete absolute yield +is_obsolete: true + +[Term] +id: PATO:0000172 +name: obsolete relative yield +is_obsolete: true + +[Term] +id: PATO:0000173 +name: obsolete function +is_obsolete: true + +[Term] +id: PATO:0000174 +name: obsolete autonomic function +is_obsolete: true + +[Term] +id: PATO:0000175 +name: obsolete behavioral function +is_obsolete: true + +[Term] +id: PATO:0000176 +name: obsolete metabolic function +is_obsolete: true + +[Term] +id: PATO:0000177 +name: obsolete physiological function +is_obsolete: true + +[Term] +id: PATO:0000178 +name: obsolete relative function +is_obsolete: true + +[Term] +id: PATO:0000179 +name: obsolete body position +is_obsolete: true + +[Term] +id: PATO:0000180 +name: obsolete body tone +is_obsolete: true + +[Term] +id: PATO:0000181 +name: obsolete piloerection +is_obsolete: true + +[Term] +id: PATO:0000182 +name: obsolete abdominal tone +is_obsolete: true + +[Term] +id: PATO:0000183 +name: obsolete limb tone +is_obsolete: true + +[Term] +id: PATO:0000184 +name: obsolete arousal +is_obsolete: true + +[Term] +id: PATO:0000185 +name: balance +def: "A behavioral quality inhering in a bearer by virtue of having physical steadiness." [thefreedictionary:thefreedictionary] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0000186 +name: behavioral quality +alt_id: PATO:0001722 +def: "An organismal quality inhering in a bearer by virtue of the bearer's behavior aggregate of the responses or reactions or movements in a given situation." [PATOC:GVG] +synonym: "behavioural quality" EXACT [] +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000187 +name: obsolete consumption quality +def: "A relational quality of occurrent inhering in a bearer by virtue of the bearer's ability to consume a resource." [PATOC:GVG] +comment: Use GO:0007631 +subset: attribute_slim +subset: relational_slim +synonym: "propensity to consume" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000188 +name: coordination +def: "A behavioral quality inhering in a bearer by virtue of the bearer's having or lacking skillful and effective interaction of movement." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0000189 +name: discrimination +def: "A behavioral quality inhering in a bearer by virtue of whether the bearer's disposition to perceive differences between two or more stimuli." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0000190 +name: obsolete gait +is_obsolete: true + +[Term] +id: PATO:0000191 +name: obsolete learning_and memory +is_obsolete: true + +[Term] +id: PATO:0000192 +name: obsolete locomotor_activity +is_obsolete: true + +[Term] +id: PATO:0000193 +name: obsolete mating +is_obsolete: true + +[Term] +id: PATO:0000194 +name: obsolete spontaneous_activity +is_obsolete: true + +[Term] +id: PATO:0000195 +name: obsolete startle response +is_obsolete: true + +[Term] +id: PATO:0000196 +name: obsolete vocalization +is_obsolete: true + +[Term] +id: PATO:0000197 +name: obsolete transfer_arousal +is_obsolete: true + +[Term] +id: PATO:0000198 +name: obsolete absolute consumption +is_obsolete: true + +[Term] +id: PATO:0000199 +name: obsolete relative consumption +is_obsolete: true + +[Term] +id: PATO:0000200 +name: obsolete learning +is_obsolete: true + +[Term] +id: PATO:0000201 +name: obsolete memory +is_obsolete: true + +[Term] +id: PATO:0000202 +name: obsolete long term memory +is_obsolete: true + +[Term] +id: PATO:0000203 +name: obsolete short term memory +is_obsolete: true + +[Term] +id: PATO:0000204 +name: obsolete absolute locomotor_activity +is_obsolete: true + +[Term] +id: PATO:0000205 +name: obsolete relative locomotor_activity +is_obsolete: true + +[Term] +id: PATO:0000206 +name: obsolete enzyme function +is_obsolete: true + +[Term] +id: PATO:0000207 +name: obsolete circulatory function +is_obsolete: true + +[Term] +id: PATO:0000208 +name: obsolete defensive function +is_obsolete: true + +[Term] +id: PATO:0000209 +name: obsolete digestive function +is_obsolete: true + +[Term] +id: PATO:0000210 +name: obsolete excretory function +is_obsolete: true + +[Term] +id: PATO:0000211 +name: obsolete muscle function +is_obsolete: true + +[Term] +id: PATO:0000212 +name: obsolete neural function +is_obsolete: true + +[Term] +id: PATO:0000213 +name: obsolete neurobehavioral function +is_obsolete: true + +[Term] +id: PATO:0000214 +name: obsolete reproductive function +is_obsolete: true + +[Term] +id: PATO:0000215 +name: obsolete respiratory function +is_obsolete: true + +[Term] +id: PATO:0000216 +name: obsolete heart rate +is_obsolete: true + +[Term] +id: PATO:0000217 +name: obsolete immune function +is_obsolete: true + +[Term] +id: PATO:0000218 +name: obsolete repair function +is_obsolete: true + +[Term] +id: PATO:0000219 +name: obsolete healing +is_obsolete: true + +[Term] +id: PATO:0000220 +name: obsolete regeneration +is_obsolete: true + +[Term] +id: PATO:0000221 +name: obsolete urination +is_obsolete: true + +[Term] +id: PATO:0000222 +name: obsolete muscle elevation +is_obsolete: true + +[Term] +id: PATO:0000223 +name: obsolete muscle strength +is_obsolete: true + +[Term] +id: PATO:0000224 +name: obsolete motor function +is_obsolete: true + +[Term] +id: PATO:0000225 +name: obsolete sensory function +is_obsolete: true + +[Term] +id: PATO:0000226 +name: obsolete tactile response +is_obsolete: true + +[Term] +id: PATO:0000227 +name: obsolete motor performance +is_obsolete: true + +[Term] +id: PATO:0000228 +name: obsolete auditory +is_obsolete: true + +[Term] +id: PATO:0000229 +name: obsolete olfactory +is_obsolete: true + +[Term] +id: PATO:0000230 +name: obsolete proprioreception +is_obsolete: true + +[Term] +id: PATO:0000231 +name: obsolete reflex +is_obsolete: true + +[Term] +id: PATO:0000232 +name: obsolete taste +is_obsolete: true + +[Term] +id: PATO:0000233 +name: obsolete touch +is_obsolete: true + +[Term] +id: PATO:0000234 +name: obsolete visual +is_obsolete: true + +[Term] +id: PATO:0000235 +name: obsolete odor_acuity +is_obsolete: true + +[Term] +id: PATO:0000236 +name: obsolete odor type +is_obsolete: true + +[Term] +id: PATO:0000237 +name: obsolete absolute odor_acuity +is_obsolete: true + +[Term] +id: PATO:0000238 +name: obsolete relative odor_acuity +is_obsolete: true + +[Term] +id: PATO:0000239 +name: obsolete blinking reflex +is_obsolete: true + +[Term] +id: PATO:0000240 +name: obsolete contact righting reflex +is_obsolete: true + +[Term] +id: PATO:0000241 +name: obsolete corneal reflex +is_obsolete: true + +[Term] +id: PATO:0000242 +name: obsolete flinch reflex +is_obsolete: true + +[Term] +id: PATO:0000243 +name: obsolete lordosis reflex +is_obsolete: true + +[Term] +id: PATO:0000244 +name: obsolete ocular reflex +is_obsolete: true + +[Term] +id: PATO:0000245 +name: obsolete pinna reflex +is_obsolete: true + +[Term] +id: PATO:0000246 +name: obsolete postural reflex +is_obsolete: true + +[Term] +id: PATO:0000247 +name: obsolete proboscis extension reflex +is_obsolete: true + +[Term] +id: PATO:0000248 +name: obsolete pupillary reflex +is_obsolete: true + +[Term] +id: PATO:0000249 +name: obsolete righting reflex +is_obsolete: true + +[Term] +id: PATO:0000250 +name: obsolete spinal reflex +is_obsolete: true + +[Term] +id: PATO:0000251 +name: obsolete startle reflex +is_obsolete: true + +[Term] +id: PATO:0000252 +name: obsolete suckling reflex +is_obsolete: true + +[Term] +id: PATO:0000253 +name: obsolete swallowing reflex +is_obsolete: true + +[Term] +id: PATO:0000254 +name: obsolete vibrissae reflex +is_obsolete: true + +[Term] +id: PATO:0000255 +name: obsolete taste_acuity +is_obsolete: true + +[Term] +id: PATO:0000256 +name: obsolete taste type +is_obsolete: true + +[Term] +id: PATO:0000257 +name: obsolete absolute taste_acuity +is_obsolete: true + +[Term] +id: PATO:0000258 +name: obsolete relative taste_acuity +is_obsolete: true + +[Term] +id: PATO:0000259 +name: obsolete visual_ability +is_obsolete: true + +[Term] +id: PATO:0000260 +name: obsolete visual_acuity +is_obsolete: true + +[Term] +id: PATO:0000261 +name: maturity +def: "A quality of a single physical entity which is held by a bearer when the latter exhibits a state of growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] +subset: attribute_slim +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000262 +name: obsolete visual placing +is_obsolete: true + +[Term] +id: PATO:0000263 +name: obsolete visual threshold +is_obsolete: true + +[Term] +id: PATO:0000264 +name: obsolete absolute visual_ability +is_obsolete: true + +[Term] +id: PATO:0000265 +name: obsolete relative visual_ability +is_obsolete: true + +[Term] +id: PATO:0000266 +name: obsolete absolute visual_acuity +is_obsolete: true + +[Term] +id: PATO:0000267 +name: obsolete relative visual_acuity +is_obsolete: true + +[Term] +id: PATO:0000268 +name: obsolete absolute visual threshold +is_obsolete: true + +[Term] +id: PATO:0000269 +name: obsolete relative visual threshold +is_obsolete: true + +[Term] +id: PATO:0000270 +name: obsolete defecation +is_obsolete: true + +[Term] +id: PATO:0000271 +name: obsolete prepulse inhibition +is_obsolete: true + +[Term] +id: PATO:0000272 +name: obsolete relative neurobehavioral function +is_obsolete: true + +[Term] +id: PATO:0000273 +name: fecundity +def: "A reproductive quality inhering in an organism or population by virtue of the bearer's potential reproductive capacity ad measured by the number of gametes." [Wikipedia:http\://en.wikipedia.org/wiki/Fecundity] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001434 ! reproductive quality + +[Term] +id: PATO:0000274 +name: fertility +def: "A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001434 ! reproductive quality + +[Term] +id: PATO:0000275 +name: obsolete gestational period +is_obsolete: true + +[Term] +id: PATO:0000276 +name: brood size +def: "A reproductive quality inhering in the young of an animal by virtue of their number." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +synonym: "litter size" RELATED [] +is_a: PATO:0001496 ! brood quality + +[Term] +id: PATO:0000277 +name: female fertility +def: "A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000274 ! fertility + +[Term] +id: PATO:0000278 +name: obsolete hybrid fertility +is_obsolete: true + +[Term] +id: PATO:0000279 +name: male fertility +def: "A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000274 ! fertility + +[Term] +id: PATO:0000280 +name: obsolete backcross fertility +is_obsolete: true + +[Term] +id: PATO:0000281 +name: obsolete cytoplasmic sterility +is_obsolete: true + +[Term] +id: PATO:0000282 +name: obsolete f1 fertility +is_obsolete: true + +[Term] +id: PATO:0000283 +name: obsolete f2 fertility +is_obsolete: true + +[Term] +id: PATO:0000284 +name: obsolete germ line dependent fertility +is_obsolete: true + +[Term] +id: PATO:0000285 +name: obsolete soma dependent fertility +is_obsolete: true + +[Term] +id: PATO:0000286 +name: obsolete cytoplasmic male sterility +is_obsolete: true + +[Term] +id: PATO:0000287 +name: obsolete absolute litter size +is_obsolete: true + +[Term] +id: PATO:0000288 +name: obsolete relative litter size +is_obsolete: true + +[Term] +id: PATO:0000289 +name: obsolete respiratory rate +is_obsolete: true + +[Term] +id: PATO:0000290 +name: obsolete absolute respiratory rate +is_obsolete: true + +[Term] +id: PATO:0000291 +name: obsolete relative respiratory rate +is_obsolete: true + +[Term] +id: PATO:0000292 +name: obsolete mobility value +is_obsolete: true + +[Term] +id: PATO:0000293 +name: obsolete absolute activity value +is_obsolete: true + +[Term] +id: PATO:0000294 +name: obsolete process value +is_obsolete: true + +[Term] +id: PATO:0000295 +name: obsolete relative activity value +is_obsolete: true + +[Term] +id: PATO:0000296 +name: obsolete speed value +is_obsolete: true + +[Term] +id: PATO:0000297 +name: arrested +alt_id: PATO:0001508 +def: "A quality of a process which ends earlier than the natural end time or reference process." [PATOC:LC] +comment: TODO: the definition is incorrect. See absent. +subset: value_slim +synonym: "abolished" EXACT [] +synonym: "incomplete" RELATED [] +is_a: PATO:0002052 ! decreased occurrence +is_a: PATO:0002324 ! offset quality + +[Term] +id: PATO:0000298 +name: obsolete not arrested value +is_obsolete: true + +[Term] +id: PATO:0000299 +name: mobile +def: "A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000004 ! mobility +disjoint_from: PATO:0000300 ! immobile +relationship: is_opposite_of PATO:0000300 ! immobile + +[Term] +id: PATO:0000300 +name: immobile +def: "A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "fixed" RELATED [] +is_a: PATO:0000004 ! mobility +relationship: is_opposite_of PATO:0000299 ! mobile + +[Term] +id: PATO:0000301 +name: obsolete absolute speed value +is_obsolete: true + +[Term] +id: PATO:0000302 +name: obsolete relative speed value +is_obsolete: true + +[Term] +id: PATO:0000303 +name: increased speed +def: "A speed which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "fast speed" RELATED [] +synonym: "high speed" EXACT [] +is_a: PATO:0000008 ! speed +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000008 ! speed +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000304 ! decreased speed + +[Term] +id: PATO:0000304 +name: decreased speed +def: "A speed which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "slow" EXACT [] +synonym: "slow speed" EXACT [] +is_a: PATO:0000008 ! speed +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000008 ! speed +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000303 ! increased speed + +[Term] +id: PATO:0000305 +name: obsolete age value +is_obsolete: true + +[Term] +id: PATO:0000306 +name: obsolete absolute age value +is_obsolete: true + +[Term] +id: PATO:0000307 +name: obsolete relative age value +is_obsolete: true + +[Term] +id: PATO:0000308 +name: old +def: "An age which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000011 ! age +relationship: is_opposite_of PATO:0000309 ! young + +[Term] +id: PATO:0000309 +name: young +def: "An age which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000011 ! age +relationship: is_opposite_of PATO:0000308 ! old + +[Term] +id: PATO:0000310 +name: obsolete color value +is_obsolete: true + +[Term] +id: PATO:0000311 +name: obsolete color hue value +is_obsolete: true + +[Term] +id: PATO:0000312 +name: obsolete color intensity value +is_obsolete: true + +[Term] +id: PATO:0000313 +name: obsolete color saturation value +is_obsolete: true + +[Term] +id: PATO:0000314 +name: obsolete flourescence value +is_obsolete: true + +[Term] +id: PATO:0000315 +name: obsolete color pattern value +is_obsolete: true + +[Term] +id: PATO:0000316 +name: obsolete relative color value +is_obsolete: true + +[Term] +id: PATO:0000317 +name: black +def: "A color that lacks any hues as parts." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000318 +name: blue +def: "A color hue with low wavelength of that portion of the visible spectrum lying between green and indigo, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 490 nanometers." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000319 +name: cyan +def: "A color consisting of green and blue hue." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000320 +name: green +def: "A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000321 +name: magenta +def: "A color consisting of red and blue hues." [Wikipedia:http\://en.wikipedia.org/wiki/Magenta] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000322 +name: red +def: "A color hue with high wavelength of the long-wave end of the visible spectrum, evoked in the human observer by radiant energy with wavelengths of approximately 630 to 750 nanometers." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000323 +name: white +def: "An achromatic color of maximum brightness; the color of objects that reflect nearly all light of all visible wavelengths." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +synonym: "whitish" RELATED [] +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000324 +name: yellow +def: "A color hue with medium wavelength of that portion of the visible spectrum lying between orange and green, evoked in the human observer by radiant energy with wavelengths of approximately 570 to 590 nanometers." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000325 +name: obsolete bright +is_obsolete: true + +[Term] +id: PATO:0000326 +name: obsolete dim +is_obsolete: true + +[Term] +id: PATO:0000327 +name: low brightness +def: "A color brightness which is relatively low." [PATOC:MAH] +subset: value_slim +synonym: "dark" EXACT [] +is_a: PATO:0000016 ! color brightness +relationship: is_opposite_of PATO:0000665 ! high brightness + +[Term] +id: PATO:0000328 +name: low saturation +def: "A color saturation which is of low purity." [PATOC:MAH] +subset: value_slim +synonym: "dull" RELATED [] +synonym: "pale" EXACT [] +is_a: PATO:0000017 ! color saturation +relationship: is_opposite_of PATO:0001229 ! high saturation + +[Term] +id: PATO:0000329 +name: blotchy +def: "A color pattern inhering in a bearer by virtue of bearer's being marked with irregularly shaped spots or blots of a different hue or degree of saturation." [Dictionary.com:Dictionary.com] +subset: value_slim +synonym: "blotched" EXACT [] +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0000330 +name: irregular spatial pattern +def: "A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +relationship: is_opposite_of PATO:0000440 ! regular spatial pattern + +[Term] +id: PATO:0000331 +name: discolored +def: "A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color." [Dictionary.com:Dictionary.com] +subset: value_slim +is_a: PATO:0000019 ! color pattern +relationship: is_opposite_of PATO:0000336 ! colored + +[Term] +id: PATO:0000333 +name: spotted +def: "A color pattern inhering in a bearer by virtue of bearer's being marked with a round area of different hue or degree of saturation." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0000335 +name: obsolete variegated +synonym: "mottled (sensu Drosophila)" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000336 +name: colored +alt_id: PATO:0000332 +def: "A color quality inhering in a bearer by virtue of the bearer's having color." [PATOC:GVG] +subset: value_slim +synonym: "pigmented" RELATED [] +is_a: PATO:0000014 ! color +relationship: is_opposite_of PATO:0000331 ! discolored + +[Term] +id: PATO:0000337 +name: colorless +alt_id: PATO:0000334 +def: "A color quality inhering in a bearer by virtue of the bearer's lacking color." [PATOC:GVG] +subset: value_slim +synonym: "unpigmented" RELATED [] +is_a: PATO:0000019 ! color pattern + +[Term] +id: PATO:0000338 +name: obsolete compatability value +is_obsolete: true + +[Term] +id: PATO:0000339 +name: obsolete gametophytic compatability value +is_obsolete: true + +[Term] +id: PATO:0000340 +name: obsolete relative compatability value +is_obsolete: true + +[Term] +id: PATO:0000341 +name: obsolete sporophytic compatability value +is_obsolete: true + +[Term] +id: PATO:0000342 +name: obsolete gametophyte compatible value +is_obsolete: true + +[Term] +id: PATO:0000343 +name: obsolete gametophyte incompatible value +is_obsolete: true + +[Term] +id: PATO:0000344 +name: compatible +def: "A compatibility quality inhering in a bearer by virtue of the bearer's being capable of harmonious coexistence." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000021 ! compatibility +disjoint_from: PATO:0000345 ! incompatible +relationship: is_opposite_of PATO:0000345 ! incompatible + +[Term] +id: PATO:0000345 +name: incompatible +def: "A compatibility quality inhering in a bearer by virtue of the bearer's being incapable of harmonious coexistence." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000021 ! compatibility +relationship: is_opposite_of PATO:0000344 ! compatible + +[Term] +id: PATO:0000346 +name: obsolete sporophyte compatible value +is_obsolete: true + +[Term] +id: PATO:0000347 +name: obsolete sporophyte incompatible value +is_obsolete: true + +[Term] +id: PATO:0000348 +name: obsolete composition value +is_obsolete: true + +[Term] +id: PATO:0000349 +name: obsolete carbohydrate composition value +is_obsolete: true + +[Term] +id: PATO:0000350 +name: obsolete electrolyte composition value +is_obsolete: true + +[Term] +id: PATO:0000351 +name: obsolete macromolecular composition value +is_obsolete: true + +[Term] +id: PATO:0000352 +name: obsolete metabolite composition value +is_obsolete: true + +[Term] +id: PATO:0000353 +name: obsolete secondary product composition value +is_obsolete: true + +[Term] +id: PATO:0000354 +name: obsolete protein composition value +is_obsolete: true + +[Term] +id: PATO:0000355 +name: obsolete enzyme composition value +is_obsolete: true + +[Term] +id: PATO:0000356 +name: obsolete concentration value +is_obsolete: true + +[Term] +id: PATO:0000357 +name: obsolete protein concentration value +is_obsolete: true + +[Term] +id: PATO:0000358 +name: obsolete sugar concentration value +is_obsolete: true + +[Term] +id: PATO:0000359 +name: obsolete water content value +is_obsolete: true + +[Term] +id: PATO:0000360 +name: obsolete consistency value +is_obsolete: true + +[Term] +id: PATO:0000361 +name: obsolete gel consistency value +is_obsolete: true + +[Term] +id: PATO:0000362 +name: obsolete direction value +is_obsolete: true + +[Term] +id: PATO:0000363 +name: obsolete away +is_obsolete: true + +[Term] +id: PATO:0000364 +name: obsolete bi-directional +is_obsolete: true + +[Term] +id: PATO:0000365 +name: down +def: "A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction +relationship: is_opposite_of PATO:0000370 ! up + +[Term] +id: PATO:0000366 +name: left +def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces east." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction + +[Term] +id: PATO:0000367 +name: right +def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces west." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction + +[Term] +id: PATO:0000368 +name: obsolete towards1 +is_obsolete: true + +[Term] +id: PATO:0000369 +name: obsolete unidirectional +is_obsolete: true + +[Term] +id: PATO:0000370 +name: up +def: "A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction +relationship: is_opposite_of PATO:0000365 ! down + +[Term] +id: PATO:0000371 +name: obsolete distance value +is_obsolete: true + +[Term] +id: PATO:0000372 +name: obsolete absolute distance value +is_obsolete: true + +[Term] +id: PATO:0000373 +name: obsolete relative distance value +is_obsolete: true + +[Term] +id: PATO:0000374 +name: increased distance +def: "A distance which is greater relative to the normal or average." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "long distance" RELATED [] +is_a: PATO:0000040 ! distance +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000040 ! distance +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000375 ! decreased distance + +[Term] +id: PATO:0000375 +name: decreased distance +def: "A distance which is lesser relative to the normal or average." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "short distance" RELATED [] +is_a: PATO:0000040 ! distance +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000040 ! distance +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000374 ! increased distance + +[Term] +id: PATO:0000376 +name: obsolete flavor value +is_obsolete: true + +[Term] +id: PATO:0000377 +name: obsolete frequency value +is_obsolete: true + +[Term] +id: PATO:0000378 +name: obsolete absolute frequency value +is_obsolete: true + +[Term] +id: PATO:0000379 +name: obsolete relative frequency value +is_obsolete: true + +[Term] +id: PATO:0000380 +name: increased frequency +def: "A frequency which is relatively high." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "frequent" RELATED [] +synonym: "high frequency" EXACT [] +is_a: PATO:0000044 ! frequency +is_a: PATO:0000912 ! increased rate +intersection_of: PATO:0000044 ! frequency +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000381 ! decreased frequency + +[Term] +id: PATO:0000381 +name: decreased frequency +def: "A frequency which is relatively low." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "infrequent" RELATED [] +synonym: "low frequency" EXACT [] +is_a: PATO:0000044 ! frequency +is_a: PATO:0000911 ! decreased rate +intersection_of: PATO:0000044 ! frequency +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000380 ! increased frequency + +[Term] +id: PATO:0000382 +name: obsolete gender value +is_obsolete: true + +[Term] +id: PATO:0000383 +name: female +def: "A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes." [MGED:MGED] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001894 ! phenotypic sex + +[Term] +id: PATO:0000384 +name: male +def: "A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes." [MGED:MGED] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001894 ! phenotypic sex + +[Term] +id: PATO:0000385 +name: obsolete hardness value +is_obsolete: true + +[Term] +id: PATO:0000386 +name: hard +def: "A hardness quality of being rigid and resistant to pressure." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +synonym: "firm" RELATED [] +synonym: "impenetrable" RELATED [] +synonym: "tough" RELATED [] +is_a: PATO:0000048 ! hardness +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000048 ! hardness +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000387 ! soft + +[Term] +id: PATO:0000387 +name: soft +def: "A hardness quality of giving little resistance to pressure." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000048 ! hardness +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000048 ! hardness +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000386 ! hard + +[Term] +id: PATO:0000388 +name: obsolete intensity value +is_obsolete: true + +[Term] +id: PATO:0000389 +name: acute +def: "A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course." [dictionary:reference] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001309 ! duration +relationship: is_opposite_of PATO:0001863 ! chronic + +[Term] +id: PATO:0000390 +name: obsolete extreme +is_obsolete: true + +[Term] +id: PATO:0000391 +name: obsolete intense +is_obsolete: true + +[Term] +id: PATO:0000392 +name: obsolete limited +is_obsolete: true + +[Term] +id: PATO:0000393 +name: obsolete maximal +is_obsolete: true + +[Term] +id: PATO:0000394 +name: mild intensity +def: "An intensity which is less than moderate in type or degree or effect or force." [PATOC:GVG] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000049 ! intensity + +[Term] +id: PATO:0000395 +name: moderate intensity +def: "An intensity which is less than extreme in type or degree or effect or force." [Merriam-Webster:Merriam-Webster] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000049 ! intensity + +[Term] +id: PATO:0000396 +name: severe intensity +def: "An intensity which is extremely bad or unpleasant in type or degree or effect or force." [WordNet:WordNet] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000049 ! intensity + +[Term] +id: PATO:0000397 +name: obsolete slight +subset: mpath_slim +is_obsolete: true + +[Term] +id: PATO:0000398 +name: obsolete vigorous +is_obsolete: true + +[Term] +id: PATO:0000399 +name: obsolete life span value +is_obsolete: true + +[Term] +id: PATO:0000400 +name: obsolete morphology value +is_obsolete: true + +[Term] +id: PATO:0000401 +name: obsolete shape value +is_obsolete: true + +[Term] +id: PATO:0000402 +name: branched +def: "A branchiness quality inhering in a bearer by virtue of the bearer's having branches." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "ramified" EXACT [] +synonym: "ramiform" EXACT [] +is_a: PATO:0002009 ! branchiness +disjoint_from: PATO:0000414 ! unbranched +relationship: is_opposite_of PATO:0000414 ! unbranched + +[Term] +id: PATO:0000403 +name: cleft +def: "A concave quality inhering in a bearer by virtue of the bearer's resembling a groove or fissure." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001857 ! concave + +[Term] +id: PATO:0000404 +name: coiled +alt_id: PATO:0001363 +def: "A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals)." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "helical" RELATED [] +synonym: "helicoid" RELATED [] +synonym: "helicoidal" RELATED [] +synonym: "helix-shaped" RELATED [] +synonym: "spiral" EXACT [] +is_a: PATO:0001794 ! coiling +relationship: is_opposite_of PATO:0000415 ! uncoiled + +[Term] +id: PATO:0000405 +name: curled +def: "A shape quality inhering in a bearer by virtue of the bearer's having parallel chains in undulate fashion on the border." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000406 +name: curved +def: "A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +synonym: "bowing" NARROW [] +synonym: "curled" RELATED [] +is_a: PATO:0001591 ! curvature + +[Term] +id: PATO:0000407 +name: flat +def: "A quality inhering in a bearer by virtue of the bearer's having a horizontal surface without a slope, tilt, or curvature." [web:http\://www.merriam-webster.com/] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "plate-like" RELATED [] +is_a: PATO:0002254 ! flattened + +[Term] +id: PATO:0000409 +name: oblate +def: "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting an equatorial diameter greater than its polar diameter." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "oblate spheroid" EXACT [] +is_a: PATO:0001865 ! spheroid + +[Term] +id: PATO:0000410 +name: pinnate +def: "A shape quality inhering in a bearer by virtue of the bearer's having leaflets or leaflets-like structures on each side of a common axis." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "feather-like" RELATED [] +synonym: "of a leaf shape" RELATED [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000411 +name: circular +def: "A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center." [thefreedictionary.com:thefreedictionary.com] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "round" RELATED [] +synonym: "rounded" RELATED [] +is_a: PATO:0000947 ! elliptic + +[Term] +id: PATO:0000413 +name: square +def: "A shape quality inhering in a bearer by virtue of the bearer's having an equal-sided rectangular form." [answers.com:answers.com] +subset: cell_quality +subset: value_slim +is_a: PATO:0002317 ! parallelogram + +[Term] +id: PATO:0000414 +name: unbranched +def: "A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0002009 ! branchiness +relationship: is_opposite_of PATO:0000402 ! branched + +[Term] +id: PATO:0000415 +name: uncoiled +def: "A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals)." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001794 ! coiling +relationship: is_opposite_of PATO:0000404 ! coiled + +[Term] +id: PATO:0000416 +name: obsolete count value +is_obsolete: true + +[Term] +id: PATO:0000417 +name: obsolete absolute number value +is_obsolete: true + +[Term] +id: PATO:0000418 +name: obsolete relative number value +is_obsolete: true + +[Term] +id: PATO:0000421 +name: obsolete nutritional value +is_obsolete: true + +[Term] +id: PATO:0000422 +name: auxotrophic +def: "A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth." [Wikipedia:http\://en.wikipedia.org/wiki/Auxotrophic] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000056 ! trophic quality +relationship: is_opposite_of PATO:0000423 ! prototrophic + +[Term] +id: PATO:0000423 +name: prototrophic +def: "A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth." [Wikipedia:http\://en.wikipedia.org/wiki/Prototrophic] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000056 ! trophic quality +relationship: is_opposite_of PATO:0000422 ! auxotrophic + +[Term] +id: PATO:0000424 +name: obsolete occurence value +is_obsolete: true + +[Term] +id: PATO:0000425 +name: obsolete continual +subset: mpath_slim +is_obsolete: true + +[Term] +id: PATO:0000427 +name: recurrent +def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly." [thefreedictionary.com:thefreedictionary.com] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000428 ! sporadic + +[Term] +id: PATO:0000428 +name: sporadic +def: "A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances." [PATO:MAH, WordNet:WordNet] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000427 ! recurrent + +[Term] +id: PATO:0000430 +name: obsolete unique +is_obsolete: true + +[Term] +id: PATO:0000431 +name: obsolete odor value +is_obsolete: true + +[Term] +id: PATO:0000432 +name: obsolete parental type value +is_obsolete: true + +[Term] +id: PATO:0000433 +name: obsolete paternal +def: "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a father." [WordNet:WordNet] +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0000434 +name: obsolete maternal +def: "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a mother." [WordNet:WordNet] +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0000435 +name: obsolete pattern value +is_obsolete: true + +[Term] +id: PATO:0000436 +name: obsolete concrete +is_obsolete: true + +[Term] +id: PATO:0000437 +name: obsolete sleep pattern value +is_obsolete: true + +[Term] +id: PATO:0000438 +name: invariant +def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation." [Dictionary:http\://dictionary.reference.com/] +subset: value_slim +synonym: "constant" RELATED [] +synonym: "uniform" EXACT [] +is_a: PATO:0001303 ! variability +relationship: is_opposite_of PATO:0001227 ! variant + +[Term] +id: PATO:0000439 +name: obsolete perseverative +is_obsolete: true + +[Term] +id: PATO:0000440 +name: regular spatial pattern +def: "A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +relationship: is_opposite_of PATO:0000330 ! irregular spatial pattern + +[Term] +id: PATO:0000441 +name: repetitive +def: "A quality of a single process inhering in a bearer by virtue of the bearer's marked by tedious repetition." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000057 ! occurrence + +[Term] +id: PATO:0000442 +name: obsolete insomnia +def: "A sleep pattern quality inhering in a bearer by virtue of the bearer's inability to sleep." [WordNet:WordNet] +comment: Consider NBO:0000422. +subset: disposition_slim +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0000443 +name: obsolete narcolepsy +def: "A sleep pattern quality inhering in a bearer by virtue of the bearer's disrupted sleep during normal sleeping period; often accompanied by cataplexy, sleep paralysis." [] +comment: Consider NBO:0000423 +subset: disposition_slim +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0000444 +name: obsolete percentage value +is_obsolete: true + +[Term] +id: PATO:0000445 +name: obsolete relative percentage value +is_obsolete: true + +[Term] +id: PATO:0000446 +name: obsolete absolute percentage value +is_obsolete: true + +[Term] +id: PATO:0000447 +name: obsolete decreased percentage +is_obsolete: true + +[Term] +id: PATO:0000448 +name: obsolete high percentage +is_obsolete: true + +[Term] +id: PATO:0000449 +name: obsolete increased percentage +is_obsolete: true + +[Term] +id: PATO:0000450 +name: obsolete low percentage +is_obsolete: true + +[Term] +id: PATO:0000451 +name: obsolete pilosity value +is_obsolete: true + +[Term] +id: PATO:0000452 +name: obsolete relative pilosity value +is_obsolete: true + +[Term] +id: PATO:0000453 +name: glabrous +def: "A pilosity quality inhering in a bearer by virtue of the bearer's lack of hairs or bristles." [PATOC:CJM, PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "hairless" RELATED [] +is_a: PATO:0000066 ! pilosity +disjoint_from: PATO:0000454 ! hairy + +[Term] +id: PATO:0000454 +name: hairy +def: "A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000066 ! pilosity + +[Term] +id: PATO:0000455 +name: pubescent +def: "A maturity quality inhering in a bearer by virtue of the bearer's having arrived at the onset of puberty (the age at which sex glands become functional) but not yet fully mature." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0000456 +name: obsolete abstract +is_obsolete: true + +[Term] +id: PATO:0000457 +name: obsolete deviation(from_normal) value +is_obsolete: true + +[Term] +id: PATO:0000458 +name: obsolete presence value +is_obsolete: true + +[Term] +id: PATO:0000459 +name: obsolete relative quantity value +is_obsolete: true + +[Term] +id: PATO:0000460 +name: abnormal +def: "A quality inhering in a bearer by virtue of the bearer's deviation from normal or average." [PATOC:GVG] +subset: abnormal_slim +subset: mpath_slim +subset: value_slim +synonym: "aberrant" RELATED [] +synonym: "atypia" RELATED [] +synonym: "atypical" RELATED [] +synonym: "defective" RELATED [] +is_a: PATO:0000069 ! deviation(from_normal) +relationship: is_opposite_of PATO:0000461 ! normal + +[Term] +id: PATO:0000461 +name: normal +def: "A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average." [PATOC:GVG] +subset: abnormal_slim +subset: mpath_slim +subset: value_slim +synonym: "average" RELATED [] +is_a: PATO:0000068 ! qualitative +relationship: is_opposite_of PATO:0000460 ! abnormal + +[Term] +id: PATO:0000462 +name: absent +alt_id: PATO:0001996 +def: "A quality denoting the lack of an entity." [thefreedictionary.:thefreedictionary.] +comment: See documentation here: http://code.google.com/p/phenotype-ontologies/wiki/ModelingOfAbsence +subset: absent_slim +subset: mpath_slim +subset: value_slim +synonym: "absence" EXACT [] +synonym: "absent from organism" EXACT [] +is_a: PATO:0000070 ! amount +disjoint_from: PATO:0000467 ! present +relationship: is_opposite_of PATO:0000467 ! present +relationship: reciprocal_of PATO:0001558 ! lacking processual parts +relationship: reciprocal_of PATO:0002000 ! lacks all parts of type + +[Term] +id: PATO:0000463 +name: conspicuous +def: "A quality inhering in a bearer by virtue of being clearly visible." [thefreedictionary:thefreedictionary] +subset: mpath_slim +subset: value_slim +synonym: "distinct" RELATED [] +is_a: PATO:0001998 ! conspicuousness +relationship: is_opposite_of PATO:0000464 ! inconspicuous + +[Term] +id: PATO:0000464 +name: inconspicuous +def: "A quality inhering in a bearer by virtue of not being clearly visible." [thefreedictionary:thefreedictionary] +subset: mpath_slim +subset: value_slim +synonym: "faint" RELATED [] +is_a: PATO:0001998 ! conspicuousness +relationship: is_opposite_of PATO:0000463 ! conspicuous + +[Term] +id: PATO:0000465 +name: obsolete marked +is_obsolete: true + +[Term] +id: PATO:0000466 +name: obsolete none +is_obsolete: true + +[Term] +id: PATO:0000467 +name: present +def: "A quality inhering in a bearer by virtue of the bearer's existence." [PATOC:GVG] +subset: absent_slim +subset: value_slim +synonym: "present in organism" RELATED [] +is_a: PATO:0000070 ! amount +relationship: is_opposite_of PATO:0000462 ! absent + +[Term] +id: PATO:0000469 +name: obsolete high +is_obsolete: true + +[Term] +id: PATO:0000470 +name: increased amount +alt_id: PATO:0000420 +alt_id: PATO:0000650 +def: "An amount which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "accessory" RELATED [] +synonym: "increased" RELATED [] +synonym: "increased number" EXACT [] +synonym: "present in greater numbers in organism" EXACT [] +synonym: "supernumerary" EXACT [] +is_a: PATO:0000467 ! present +is_a: PATO:0002300 ! increased quality +intersection_of: PATO:0000070 ! amount +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001997 ! decreased amount + +[Term] +id: PATO:0000471 +name: obsolete low +is_obsolete: true + +[Term] +id: PATO:0000472 +name: obsolete quality value +is_obsolete: true + +[Term] +id: PATO:0000473 +name: obsolete relative_quality value +is_obsolete: true + +[Term] +id: PATO:0000474 +name: obsolete shattering value +is_obsolete: true + +[Term] +id: PATO:0000475 +name: obsolete threshability value +is_obsolete: true + +[Term] +id: PATO:0000476 +name: obsolete bad value +is_obsolete: true + +[Term] +id: PATO:0000477 +name: obsolete good value +is_obsolete: true + +[Term] +id: PATO:0000478 +name: obsolete poor value +is_obsolete: true + +[Term] +id: PATO:0000479 +name: obsolete regulation value +is_obsolete: true + +[Term] +id: PATO:0000480 +name: obsolete positive regulation +is_obsolete: true + +[Term] +id: PATO:0000481 +name: obsolete negative regulation +is_obsolete: true + +[Term] +id: PATO:0000482 +name: obsolete response value +is_obsolete: true + +[Term] +id: PATO:0000483 +name: obsolete tactile hyperresponsive +is_obsolete: true + +[Term] +id: PATO:0000484 +name: obsolete tactile hyporesponsive +is_obsolete: true + +[Term] +id: PATO:0000485 +name: obsolete mild response +is_obsolete: true + +[Term] +id: PATO:0000486 +name: obsolete moderate response +is_obsolete: true + +[Term] +id: PATO:0000487 +name: responsive to +def: "A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "responsive" EXACT [] +is_a: PATO:0000077 ! response to +disjoint_from: PATO:0000488 ! unresponsive to +relationship: is_opposite_of PATO:0000488 ! unresponsive to + +[Term] +id: PATO:0000488 +name: unresponsive to +def: "A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "unresponsive" EXACT [] +is_a: PATO:0000077 ! response to +relationship: is_opposite_of PATO:0000487 ! responsive to + +[Term] +id: PATO:0000489 +name: obsolete vigorous response +is_obsolete: true + +[Term] +id: PATO:0000490 +name: obsolete rhythym value +is_obsolete: true + +[Term] +id: PATO:0000491 +name: obsolete sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000492 +name: obsolete absolute rhythym value +is_obsolete: true + +[Term] +id: PATO:0000493 +name: obsolete amplitude value +is_obsolete: true + +[Term] +id: PATO:0000494 +name: obsolete period value +is_obsolete: true + +[Term] +id: PATO:0000495 +name: obsolete persistence value +is_obsolete: true + +[Term] +id: PATO:0000496 +name: obsolete phase value +is_obsolete: true + +[Term] +id: PATO:0000497 +name: obsolete relative rhythym value +is_obsolete: true + +[Term] +id: PATO:0000498 +name: increased duration +alt_id: PATO:0000715 +def: "A duration quality of a process which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "chronic" RELATED [] +synonym: "high time" EXACT [] +synonym: "increased period" EXACT [] +synonym: "increased time" EXACT [] +synonym: "prolonged period" RELATED [] +synonym: "slow time" RELATED [] +is_a: PATO:0001309 ! duration +is_a: PATO:0002304 ! increased process quality +intersection_of: PATO:0001309 ! duration +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000499 ! decreased duration + +[Term] +id: PATO:0000499 +name: decreased duration +alt_id: PATO:0000716 +def: "A duration quality of a process which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "decreased period" EXACT [] +synonym: "decreased time" EXACT [] +synonym: "fast time" RELATED [] +synonym: "low period" EXACT [] +synonym: "shortened period" EXACT [] +is_a: PATO:0001309 ! duration +is_a: PATO:0002302 ! decreased process quality +intersection_of: PATO:0001309 ! duration +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000498 ! increased duration + +[Term] +id: PATO:0000500 +name: advanced phase +def: "A phase which occurs earlier than the natural start time." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0000501 +name: dark phase +def: "A phase which occurs during dark cycle." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0000502 +name: delayed +def: "A quality of a process which starts later than the natural start time or the reference process." [PATOC:LC] +subset: value_slim +synonym: "late" RELATED [] +is_a: PATO:0002325 ! onset quality + +[Term] +id: PATO:0000503 +name: light phase +def: "A phase which occurs during the light cycle." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0000504 +name: arrhythmic +def: "A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000078 ! rhythm quality +relationship: is_opposite_of PATO:0000505 ! rhythmic + +[Term] +id: PATO:0000505 +name: rhythmic +def: "A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000078 ! rhythm quality +relationship: is_opposite_of PATO:0000504 ! arrhythmic + +[Term] +id: PATO:0000506 +name: obsolete absolute sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000507 +name: obsolete disease sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000508 +name: obsolete relative sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000509 +name: obsolete stress sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000510 +name: obsolete temperature sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000511 +name: obsolete absolute disease sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000512 +name: obsolete relative disease sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000513 +name: insensitive toward +def: "A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "insensitive" EXACT [] +synonym: "resistant" RELATED [] +is_a: PATO:0000085 ! sensitivity toward +relationship: is_opposite_of PATO:0000516 ! sensitive toward + +[Term] +id: PATO:0000514 +name: obsolete intolerant value +is_obsolete: true + +[Term] +id: PATO:0000515 +name: tolerant to +def: "A resistance quality inhering in a bearer by virtue of its disposition to endure or being insensitive to a stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "tolerant" EXACT [] +is_a: PATO:0001046 ! resistance to +disjoint_from: PATO:0001178 ! resistant to + +[Term] +id: PATO:0000516 +name: sensitive toward +def: "A quality inhering in a bearer by virtue of the bearer's having sensitivity toward an external stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "sensitive" EXACT [] +is_a: PATO:0000085 ! sensitivity toward +relationship: is_opposite_of PATO:0000513 ! insensitive toward + +[Term] +id: PATO:0000517 +name: obsolete abiotic stress sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000518 +name: obsolete chemical sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000519 +name: obsolete humidity sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000520 +name: obsolete radiation sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000521 +name: obsolete drug sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000522 +name: obsolete herbicide sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000523 +name: obsolete insecticide sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000524 +name: obsolete plant growth hormone sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000525 +name: obsolete soil composition sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000526 +name: obsolete absolute drug sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000527 +name: obsolete relative drug sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000528 +name: obsolete drug insensitive +is_obsolete: true + +[Term] +id: PATO:0000529 +name: obsolete drug sensitive +is_obsolete: true + +[Term] +id: PATO:0000530 +name: obsolete soil nutrient sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000531 +name: obsolete macronutrient sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000532 +name: obsolete micronutrient sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000533 +name: obsolete osmotic response sensitivity +is_obsolete: true + +[Term] +id: PATO:0000534 +name: obsolete p h sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000535 +name: obsolete salt sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000536 +name: obsolete water sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000537 +name: obsolete acid sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000538 +name: obsolete alkali sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000539 +name: obsolete drought sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000540 +name: obsolete flooding sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000541 +name: obsolete photosensitivity value +is_obsolete: true + +[Term] +id: PATO:0000542 +name: obsolete absolute photosensitivity value +is_obsolete: true + +[Term] +id: PATO:0000543 +name: obsolete light intensivity sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000544 +name: obsolete light_quality sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000545 +name: obsolete relative photosensitivity value +is_obsolete: true + +[Term] +id: PATO:0000546 +name: photoinsensitive +def: "A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "photoresistant" RELATED [] +is_a: PATO:0000927 ! photosensitivity +disjoint_from: PATO:0000547 ! photosensitive +relationship: is_opposite_of PATO:0000547 ! photosensitive + +[Term] +id: PATO:0000547 +name: photosensitive +def: "A photosensitivity quality inhering in a bearer by virtue of the bearer's exhibiting photosensitivity." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000927 ! photosensitivity +relationship: is_opposite_of PATO:0000546 ! photoinsensitive + +[Term] +id: PATO:0000548 +name: obsolete blue light sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000549 +name: obsolete far red light sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000550 +name: obsolete red light sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000551 +name: obsolete u v light sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000552 +name: obsolete absolute temperature sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000553 +name: obsolete relative temperature sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000554 +name: obsolete cold sensitive +is_obsolete: true + +[Term] +id: PATO:0000555 +name: obsolete heat sensitive +is_obsolete: true + +[Term] +id: PATO:0000556 +name: obsolete thermoinsensitive +synonym: "thermoresistant" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000557 +name: obsolete thermosensitive +is_obsolete: true + +[Term] +id: PATO:0000558 +name: obsolete size value +is_obsolete: true + +[Term] +id: PATO:0000559 +name: obsolete absolute size value +is_obsolete: true + +[Term] +id: PATO:0000560 +name: obsolete height value +is_obsolete: true + +[Term] +id: PATO:0000561 +name: obsolete length value +is_obsolete: true + +[Term] +id: PATO:0000562 +name: obsolete mass value +is_obsolete: true + +[Term] +id: PATO:0000563 +name: obsolete relative size value +is_obsolete: true + +[Term] +id: PATO:0000564 +name: obsolete thickness value +is_obsolete: true + +[Term] +id: PATO:0000565 +name: obsolete volume value +is_obsolete: true + +[Term] +id: PATO:0000566 +name: obsolete width value +synonym: ":breadth" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000567 +name: obsolete absolute height value +is_obsolete: true + +[Term] +id: PATO:0000568 +name: obsolete relative height value +is_obsolete: true + +[Term] +id: PATO:0000569 +name: decreased height +def: "A height which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "short" RELATED [] +is_a: PATO:0000119 ! height +is_a: PATO:0000587 ! decreased size +intersection_of: PATO:0000119 ! height +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000570 ! increased height + +[Term] +id: PATO:0000570 +name: increased height +def: "A height which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "tall" RELATED [] +is_a: PATO:0000119 ! height +is_a: PATO:0000586 ! increased size +intersection_of: PATO:0000119 ! height +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000569 ! decreased height + +[Term] +id: PATO:0000571 +name: obsolete absolute length value +is_obsolete: true + +[Term] +id: PATO:0000572 +name: obsolete relative length value +is_obsolete: true + +[Term] +id: PATO:0000573 +name: increased length +def: "A length quality which is relatively large." [PATOC:GVG] +subset: value_slim +synonym: "long" EXACT [] +is_a: PATO:0000122 ! length +is_a: PATO:0000586 ! increased size +intersection_of: PATO:0000122 ! length +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000574 ! decreased length + +[Term] +id: PATO:0000574 +name: decreased length +def: "A length quality which is relatively small." [PATOC:GVG] +subset: value_slim +synonym: "short" EXACT [] +synonym: "shortened" RELATED [] +synonym: "stubby" RELATED [] +is_a: PATO:0000122 ! length +is_a: PATO:0000587 ! decreased size +intersection_of: PATO:0000122 ! length +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000573 ! increased length + +[Term] +id: PATO:0000575 +name: obsolete absolute mass value +is_obsolete: true + +[Term] +id: PATO:0000576 +name: obsolete relative mass value +is_obsolete: true + +[Term] +id: PATO:0000577 +name: obsolete weight value +is_obsolete: true + +[Term] +id: PATO:0000580 +name: obsolete absolute weight value +is_obsolete: true + +[Term] +id: PATO:0000581 +name: obsolete relative weight value +is_obsolete: true + +[Term] +id: PATO:0000582 +name: increased weight +def: "A weight which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "heavy" EXACT [] +synonym: "high weight" EXACT [] +is_a: PATO:0000128 ! weight +is_a: PATO:0002245 ! increased force +intersection_of: PATO:0000128 ! weight +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000583 ! decreased weight + +[Term] +id: PATO:0000583 +name: decreased weight +def: "A weight which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "light weight" EXACT [] +synonym: "low weight" EXACT [] +is_a: PATO:0000128 ! weight +is_a: PATO:0002246 ! decreased force +intersection_of: PATO:0000128 ! weight +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000582 ! increased weight + +[Term] +id: PATO:0000584 +name: hypertrophic +def: "An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ)." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +synonym: "hypertrophy" NARROW [] +is_a: PATO:0000595 ! increased volume +relationship: is_opposite_of PATO:0000585 ! hypotrophic + +[Term] +id: PATO:0000585 +name: hypotrophic +alt_id: PATO:0000412 +def: "A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ)." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +synonym: "shrunken" EXACT [] +is_a: PATO:0000596 ! decreased volume +relationship: is_opposite_of PATO:0000584 ! hypertrophic + +[Term] +id: PATO:0000586 +name: increased size +alt_id: PATO:0001202 +def: "A size quality which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "big" RELATED [] +synonym: "enlarged" RELATED [] +synonym: "expanded" RELATED [] +synonym: "great" RELATED [] +synonym: "large" RELATED [] +is_a: PATO:0000117 ! size +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000117 ! size +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000587 ! decreased size + +[Term] +id: PATO:0000587 +name: decreased size +def: "A size quality which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "hypoplasia" NARROW [] +synonym: "reduced" RELATED [] +synonym: "small" RELATED [] +synonym: "tiny" RELATED [] +synonym: "underdeveloped" NARROW [] +is_a: PATO:0000117 ! size +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000117 ! size +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000586 ! increased size + +[Term] +id: PATO:0000588 +name: vestigial +def: "A quality inhering in a bearer by virtue of the bearer's being a remnant structure from earlier development or evolution." [PATOC:MAH] +comment: May be part of an animal (such as an organ or bone) that is no longer used by the species and has therefore become smaller or less developed. +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000589 +name: obsolete absolute thickness value +is_obsolete: true + +[Term] +id: PATO:0000590 +name: obsolete relative thickness value +is_obsolete: true + +[Term] +id: PATO:0000591 +name: increased thickness +def: "A thickness which is relatively high." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "high thickness" EXACT [] +synonym: "stout" EXACT [] +synonym: "thick" RELATED [] +synonym: "thickened" EXACT [] +is_a: PATO:0000586 ! increased size +is_a: PATO:0000915 ! thickness +intersection_of: PATO:0000915 ! thickness +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000592 ! decreased thickness + +[Term] +id: PATO:0000592 +name: decreased thickness +def: "A thickness which is relatively low." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "low thickness" EXACT [] +synonym: "slender" RELATED [] +synonym: "thin" RELATED [] +is_a: PATO:0000587 ! decreased size +is_a: PATO:0000915 ! thickness +intersection_of: PATO:0000915 ! thickness +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000591 ! increased thickness + +[Term] +id: PATO:0000593 +name: obsolete absolute volume value +is_obsolete: true + +[Term] +id: PATO:0000594 +name: obsolete relative volume value +is_obsolete: true + +[Term] +id: PATO:0000595 +name: increased volume +def: "A volume which is relatively high." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "high volume" EXACT [] +synonym: "large volume" RELATED [] +is_a: PATO:0000586 ! increased size +is_a: PATO:0000918 ! volume +intersection_of: PATO:0000918 ! volume +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000596 ! decreased volume + +[Term] +id: PATO:0000596 +name: decreased volume +def: "A volume which is relatively low." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "low volume" EXACT [] +synonym: "small volume" RELATED [] +is_a: PATO:0000587 ! decreased size +is_a: PATO:0000918 ! volume +intersection_of: PATO:0000918 ! volume +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000595 ! increased volume + +[Term] +id: PATO:0000597 +name: obsolete absolute width value +is_obsolete: true + +[Term] +id: PATO:0000598 +name: obsolete relative width value +is_obsolete: true + +[Term] +id: PATO:0000599 +name: decreased width +def: "A width which is relatively small." [PATOC:GVG] +subset: value_slim +synonym: "narrow" RELATED [] +is_a: PATO:0000587 ! decreased size +is_a: PATO:0000921 ! width +intersection_of: PATO:0000921 ! width +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000600 ! increased width + +[Term] +id: PATO:0000600 +name: increased width +def: "A width which is relatively large." [PATOC:GVG] +subset: value_slim +synonym: "broad" RELATED [] +synonym: "wide" RELATED [] +synonym: "wide/broad" RELATED [] +is_a: PATO:0000586 ! increased size +is_a: PATO:0000921 ! width +intersection_of: PATO:0000921 ! width +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000599 ! decreased width + +[Term] +id: PATO:0000601 +name: obsolete spatial value +is_obsolete: true + +[Term] +id: PATO:0000602 +name: obsolete angle value +is_obsolete: true + +[Term] +id: PATO:0000603 +name: obsolete closure value +is_obsolete: true + +[Term] +id: PATO:0000604 +name: obsolete orientation value +is_obsolete: true + +[Term] +id: PATO:0000605 +name: obsolete placement value +synonym: "location" RELATED [] +synonym: "position" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000606 +name: obsolete absolute angle value +is_obsolete: true + +[Term] +id: PATO:0000607 +name: obsolete relative angle value +is_obsolete: true + +[Term] +id: PATO:0000608 +name: closed +def: "A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view." [answers.com:answers.com] +subset: value_slim +synonym: "blocked" RELATED [] +is_a: PATO:0000136 ! closure +disjoint_from: PATO:0000610 ! open +relationship: is_opposite_of PATO:0000610 ! open + +[Term] +id: PATO:0000609 +name: closure incomplete +def: "A morphological quality inhering in a bearer by virtue of the bearer's affording not completed blocked passage or view." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000610 ! open + +[Term] +id: PATO:0000610 +name: open +def: "A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view." [answers.com:answers.com] +subset: value_slim +is_a: PATO:0000136 ! closure +relationship: is_opposite_of PATO:0000608 ! closed + +[Term] +id: PATO:0000611 +name: obsolete absolute orientation value +is_obsolete: true + +[Term] +id: PATO:0000612 +name: obsolete relative orientation value +is_obsolete: true + +[Term] +id: PATO:0000613 +name: disoriented +def: "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000330 ! irregular spatial pattern +relationship: is_opposite_of PATO:0000614 ! oriented + +[Term] +id: PATO:0000614 +name: oriented +def: "A pattern where all the repeated elements are oriented in the same direction." [PATOC:MAH] +subset: value_slim +is_a: PATO:0000440 ! regular spatial pattern +relationship: is_opposite_of PATO:0000613 ! disoriented + +[Term] +id: PATO:0000615 +name: wholly anterioralized +def: "An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally anterior structures." [PATOC:GVG] +subset: value_slim +synonym: "anterioralized" RELATED [] +is_a: PATO:0030000 ! anterioralized + +[Term] +id: PATO:0000616 +name: asymmetrical +def: "A symmetry quality inhering in a bearer by virtue of the bearer's lacking symmetry." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "asymmetric" EXACT [] +synonym: "asymmetry" EXACT [] +is_a: PATO:0000965 ! symmetry + +[Term] +id: PATO:0000617 +name: bent +def: "A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length." [PATOC:MAH] +subset: value_slim +synonym: "angled" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000618 +name: bilateral +def: "A positional quality inhering in a bearer by virtue of the bearer's having two sides; two-sided." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000619 +name: crowded +def: "A positional quality inhering in a bearer by virtue of the bearer's being overfilled." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000140 ! position +relationship: is_opposite_of PATO:0000633 ! uncrowded + +[Term] +id: PATO:0000620 +name: wholly dorsalized +def: "A dorsalized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally dorsal structures." [PATOC:melissa] +subset: mpath_slim +subset: value_slim +synonym: "dorsalized" RELATED [] +is_a: PATO:0030001 ! dorsalized + +[Term] +id: PATO:0000622 +name: erect +def: "A positional quality inhering in a bearer by virtue of the bearer's being upright in position or posture." [WordNet:WordNet] +subset: value_slim +synonym: "upright" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000623 +name: exserted +def: "A quality inhering in a bearer by virtue of the bearer's protruding or projecting from the body." [sdvc:sdvc] +subset: value_slim +synonym: "prolapse" RELATED [] +synonym: "prolapsed" RELATED [] +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0000624 +name: inserted into +def: "A spatial quality inhering in a bearer by virtue of the bearer's becoming joined together with an additional entity." [PATOC:nw] +subset: relational_slim +subset: value_slim +synonym: "inserted" EXACT [] +synonym: "introduced into" RELATED [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000625 +name: inverted +def: "An oriented quality inhering in a bearer by virtue of the bearer's being reversed in position, order, or condition." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "backward" RELATED [] +synonym: "reversed" RELATED [] +is_a: PATO:0000614 ! oriented + +[Term] +id: PATO:0000626 +name: lateralized +def: "A positional quality inhering in a bearer by virtue of the bearer's being moved or displaced to one side so as to make lateral." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000627 +name: localized +def: "A spatial pattern quality inhering in a bearer by virtue of the bearer's being confined or restricted to a particular location." [WordNet:WordNet] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +synonym: "focal" EXACT [] +synonym: "localised" EXACT [] +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0000628 +name: mislocalised +alt_id: PATO:0000621 +def: "A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "ectopic" EXACT [] +synonym: "mislocalized" EXACT [] +is_a: PATO:0002181 ! displaced + +[Term] +id: PATO:0000629 +name: misrouted +def: "A positional quality inhering in a bearer by virtue of the bearer's having mistakenly taken course, way, or passage; ill-routed." [NDI:NDI] +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000630 +name: wholly posterioralized +def: "A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally posterior structures." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "posterioralized" RELATED [] +is_a: PATO:0030002 ! posterioralized + +[Term] +id: PATO:0000631 +name: prostrate +def: "A positional quality inhering in a bearer by virtue of the bearer's being stretched out and lying at full length along the ground." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000632 +name: symmetrical +def: "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division by a longitudinal plane into similar halves." [PATOC:GVG] +comment: similar pattern in both halves +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "symmetric" EXACT [] +is_a: PATO:0000440 ! regular spatial pattern +is_a: PATO:0000965 ! symmetry + +[Term] +id: PATO:0000633 +name: uncrowded +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +relationship: is_opposite_of PATO:0000619 ! crowded + +[Term] +id: PATO:0000634 +name: unilateral +def: "A spatial pattern inhering in a bearer by virtue of the bearer's involvement of only one part or side." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0000635 +name: unlocalised +def: "A spatial pattern inhering in a bearer by virtue of the bearer's not being confined or restricted to a particular location." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0000636 +name: wholly ventralized +def: "A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally ventral structures." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "ventralized" RELATED [] +is_a: PATO:0030003 ! ventralized + +[Term] +id: PATO:0000637 +name: obsolete structure value +is_obsolete: true + +[Term] +id: PATO:0000638 +name: apoptotic +def: "A structural quality inhering in a bearer by virtue of the bearer's consisting of blebbing of the nucleus and DNA fragmentation due to the cell undergoing a specific form of programmed cell death termed apoptosis." [PATOC:GVG] +subset: value_slim +xref: GO:0006915 +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000639 +name: degenerate +def: "A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process." [PATOC:mb, PATOC:PortlandMeetingFeb2015] +subset: mpath_slim +subset: value_slim +synonym: "degeneration" NARROW [] +is_a: PATO:0002037 ! degeneration +disjoint_from: PATO:0001623 ! atrophied +disjoint_from: PATO:0002038 ! non-degenerate +relationship: has_part PATO:0000585 ! hypotrophic +relationship: is_opposite_of PATO:0002038 ! non-degenerate + +[Term] +id: PATO:0000640 +name: dysplastic +def: "A structural quality inhering in a bearer by virtue of the bearer's exhibiting an alteration in size, shape or organization of its constituent cells." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +synonym: "dysplasia" NARROW [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000641 +name: obsolete deposition defective +is_obsolete: true + +[Term] +id: PATO:0000642 +name: fused with +def: "A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "coalesced" RELATED [] +synonym: "fused" EXACT [] +synonym: "fused to" EXACT [] +synonym: "joined with" RELATED [] +synonym: "merged with" RELATED [] +is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0000651 ! unfused from + +[Term] +id: PATO:0000643 +name: herniated +def: "A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it." [spinalstenosis:spinalstenosis] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0000644 +name: hyperplastic +alt_id: PATO:0000943 +def: "A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells." [Wikipedia:http\://en.wikipedia.org/wiki/Hyperplastic] +subset: mpath_slim +subset: value_slim +synonym: "hyperplasia" EXACT [] +synonym: "overdeveloped" RELATED [] +is_a: PATO:0000586 ! increased size +relationship: is_opposite_of PATO:0000645 ! hypoplastic + +[Term] +id: PATO:0000645 +name: hypoplastic +alt_id: PATO:0000942 +def: "A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "hypoplasia" EXACT [] +synonym: "underdeveloped" RELATED [] +is_a: PATO:0000587 ! decreased size +is_a: PATO:0002290 ! aplastic/hypoplastic +relationship: is_opposite_of PATO:0000644 ! hyperplastic + +[Term] +id: PATO:0000646 +name: malformed +def: "A morphological quality inhering in a bearer by virtue of the bearer's being distorted during formation." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +synonym: "malformation" NARROW [] +is_a: PATO:0001617 ! deformed + +[Term] +id: PATO:0000647 +name: necrotic +def: "A structural quality inhering in a bearer by virtue of the bearer's undergoing unprogrammed cell death." [Wikipedia:http\://en.wikipedia.org/wiki/Necrotic] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000648 +name: obstructed +def: "A morphological quality inhering in a bearer by virtue of the bearer's being blocked or filled with obstacles or an obstacle." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000608 ! closed + +[Term] +id: PATO:0000651 +name: unfused from +def: "A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity." [PATOC:nw] +subset: relational_slim +subset: value_slim +synonym: "unfused" EXACT [] +is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0000642 ! fused with + +[Term] +id: PATO:0000652 +name: obsolete substance value +is_obsolete: true + +[Term] +id: PATO:0000653 +name: obsolete addictive substance value +is_obsolete: true + +[Term] +id: PATO:0000654 +name: obsolete alcochol value +is_obsolete: true + +[Term] +id: PATO:0000655 +name: obsolete amphetamine value +is_obsolete: true + +[Term] +id: PATO:0000656 +name: obsolete time_quantity +is_obsolete: true + +[Term] +id: PATO:0000657 +name: obsolete length_quantity +is_obsolete: true + +[Term] +id: PATO:0000658 +name: obsolete metamphetamine value +is_obsolete: true + +[Term] +id: PATO:0000659 +name: obsolete temparature_quantity +is_obsolete: true + +[Term] +id: PATO:0000660 +name: obsolete angle_quantity +is_obsolete: true + +[Term] +id: PATO:0000661 +name: obsolete solid substance value +is_obsolete: true + +[Term] +id: PATO:0000662 +name: obsolete volume_quantity +is_obsolete: true + +[Term] +id: PATO:0000663 +name: obsolete occurrent +is_obsolete: true + +[Term] +id: PATO:0000664 +name: obsolete substance_quantity +is_obsolete: true + +[Term] +id: PATO:0000665 +name: high brightness +def: "A color brightness which is relatively high." [PATOC:MAH] +subset: value_slim +synonym: "light" EXACT [] +is_a: PATO:0000016 ! color brightness +relationship: is_opposite_of PATO:0000327 ! low brightness + +[Term] +id: PATO:0000666 +name: obsolete energy_quantity +is_obsolete: true + +[Term] +id: PATO:0000667 +name: obsolete liquid substance value +is_obsolete: true + +[Term] +id: PATO:0000668 +name: obsolete mass_quantity +is_obsolete: true + +[Term] +id: PATO:0000669 +name: obsolete concentration_unit +is_obsolete: true + +[Term] +id: PATO:0000670 +name: obsolete saccharin versus water value +is_obsolete: true + +[Term] +id: PATO:0000671 +name: obsolete water value +is_obsolete: true + +[Term] +id: PATO:0000672 +name: obsolete unit +is_obsolete: true + +[Term] +id: PATO:0000673 +name: obsolete temperature value +is_obsolete: true + +[Term] +id: PATO:0000674 +name: obsolete absolute temperature value +is_obsolete: true + +[Term] +id: PATO:0000675 +name: obsolete body temperature value +is_obsolete: true + +[Term] +id: PATO:0000676 +name: obsolete relative temperature value +is_obsolete: true + +[Term] +id: PATO:0000679 +name: obsolete temporal value +is_obsolete: true + +[Term] +id: PATO:0000680 +name: obsolete absolute temporal value +is_obsolete: true + +[Term] +id: PATO:0000681 +name: obsolete incidence value +is_obsolete: true + +[Term] +id: PATO:0000682 +name: obsolete rate value +is_obsolete: true + +[Term] +id: PATO:0000683 +name: obsolete relative temporal value +is_obsolete: true + +[Term] +id: PATO:0000684 +name: obsolete absolute incidence value +is_obsolete: true + +[Term] +id: PATO:0000685 +name: obsolete relative incidence value +is_obsolete: true + +[Term] +id: PATO:0000686 +name: obsolete absolute rate value +is_obsolete: true + +[Term] +id: PATO:0000687 +name: obsolete relative rate value +is_obsolete: true + +[Term] +id: PATO:0000688 +name: asynchronous +def: "A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000695 ! synchronous + +[Term] +id: PATO:0000689 +name: continuous +alt_id: PATO:0000429 +def: "A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +synonym: "uninterrupted" EXACT [] +is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000690 ! discontinuous + +[Term] +id: PATO:0000690 +name: discontinuous +alt_id: PATO:0000426 +def: "A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +synonym: "intermittent" RELATED [] +synonym: "interrupted" EXACT [] +is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000689 ! continuous + +[Term] +id: PATO:0000692 +name: heterochronic +def: "A quality of a single process inhering in a bearer by virtue of the bearer's origin or development at an unusual time or out of the regular sequence." [answers.com:answers.com] +subset: value_slim +is_a: PATO:0000057 ! occurrence + +[Term] +id: PATO:0000693 +name: obsolete late +is_obsolete: true + +[Term] +id: PATO:0000694 +name: premature +alt_id: PATO:0000691 +alt_id: PATO:0002086 +def: "A quality of a process which starts earlier than the natural start time or the reference process." [PATO:LC] +subset: value_slim +synonym: "advanced" EXACT [] +synonym: "early" RELATED [] +synonym: "precocious" RELATED [] +is_a: PATO:0002325 ! onset quality + +[Term] +id: PATO:0000695 +name: synchronous +def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000688 ! asynchronous + +[Term] +id: PATO:0000696 +name: obsolete texture value +is_obsolete: true + +[Term] +id: PATO:0000697 +name: obsolete relative texture value +is_obsolete: true + +[Term] +id: PATO:0000698 +name: obsolete floury +is_obsolete: true + +[Term] +id: PATO:0000699 +name: obsolete glutinous +is_obsolete: true + +[Term] +id: PATO:0000700 +name: rough +alt_id: PATO:0001616 +def: "A texture quality inhering in a bearer by virtue of the bearer's irregular surface." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "coarse" EXACT [] +is_a: PATO:0000150 ! texture +relationship: is_opposite_of PATO:0000701 ! smooth + +[Term] +id: PATO:0000701 +name: smooth +def: "A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000150 ! texture +relationship: is_opposite_of PATO:0000700 ! rough + +[Term] +id: PATO:0000702 +name: obsolete threshold value +is_obsolete: true + +[Term] +id: PATO:0000703 +name: obsolete absolute threshold value +is_obsolete: true + +[Term] +id: PATO:0000704 +name: obsolete pain threshold value +is_obsolete: true + +[Term] +id: PATO:0000705 +name: obsolete relative threshold value +is_obsolete: true + +[Term] +id: PATO:0000706 +name: increased threshold +alt_id: PATO:0000709 +def: "A threshold which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high threshold" EXACT [] +is_a: PATO:0000152 ! threshold +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000152 ! threshold +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000708 ! decreased threshold + +[Term] +id: PATO:0000708 +name: decreased threshold +alt_id: PATO:0000707 +def: "A threshold which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "low threshold" EXACT [] +is_a: PATO:0000152 ! threshold +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000152 ! threshold +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000706 ! increased threshold + +[Term] +id: PATO:0000710 +name: obsolete time value +is_obsolete: true + +[Term] +id: PATO:0000711 +name: obsolete absolute time value +is_obsolete: true + +[Term] +id: PATO:0000712 +name: obsolete bouts value +is_obsolete: true + +[Term] +id: PATO:0000713 +name: obsolete relative time value +is_obsolete: true + +[Term] +id: PATO:0000714 +name: obsolete latency value +is_obsolete: true + +[Term] +id: PATO:0000717 +name: obsolete viability value +is_obsolete: true + +[Term] +id: PATO:0000718 +name: lethal (sensu genetics) +def: "A viability quality inhering in a population by virtue of the bearer's long term survival inability." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0000719 +name: viable +def: "A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0000720 +name: obsolete yield value +is_obsolete: true + +[Term] +id: PATO:0000721 +name: obsolete absolute yield value +is_obsolete: true + +[Term] +id: PATO:0000722 +name: obsolete relative yield value +is_obsolete: true + +[Term] +id: PATO:0000723 +name: obsolete high yield +is_obsolete: true + +[Term] +id: PATO:0000724 +name: obsolete low yield +is_obsolete: true + +[Term] +id: PATO:0000725 +name: obsolete function value +is_obsolete: true + +[Term] +id: PATO:0000726 +name: obsolete autonomic function value +is_obsolete: true + +[Term] +id: PATO:0000727 +name: obsolete behavioral function value +is_obsolete: true + +[Term] +id: PATO:0000728 +name: obsolete metabolic function value +is_obsolete: true + +[Term] +id: PATO:0000729 +name: obsolete physiological function value +is_obsolete: true + +[Term] +id: PATO:0000730 +name: obsolete relative function value +is_obsolete: true + +[Term] +id: PATO:0000731 +name: obsolete body position value +is_obsolete: true + +[Term] +id: PATO:0000732 +name: obsolete body tone value +is_obsolete: true + +[Term] +id: PATO:0000733 +name: obsolete piloerection value +is_obsolete: true + +[Term] +id: PATO:0000734 +name: obsolete abdominal tone value +is_obsolete: true + +[Term] +id: PATO:0000735 +name: obsolete limb tone value +is_obsolete: true + +[Term] +id: PATO:0000736 +name: obsolete dysfunctional value +is_obsolete: true + +[Term] +id: PATO:0000737 +name: obsolete functional value +is_obsolete: true + +[Term] +id: PATO:0000738 +name: obsolete enzyme function value +is_obsolete: true + +[Term] +id: PATO:0000739 +name: obsolete absolute enzyme function value +is_obsolete: true + +[Term] +id: PATO:0000740 +name: obsolete relative enzyme function value +is_obsolete: true + +[Term] +id: PATO:0000741 +name: obsolete high enzyme function value +is_obsolete: true + +[Term] +id: PATO:0000742 +name: obsolete low enzyme function value +is_obsolete: true + +[Term] +id: PATO:0000743 +name: obsolete arousal value +is_obsolete: true + +[Term] +id: PATO:0000744 +name: obsolete balance value +is_obsolete: true + +[Term] +id: PATO:0000745 +name: obsolete behavioral quality value +is_obsolete: true + +[Term] +id: PATO:0000746 +name: obsolete consumption value +is_obsolete: true + +[Term] +id: PATO:0000747 +name: obsolete coordination value +is_obsolete: true + +[Term] +id: PATO:0000748 +name: obsolete discrimination value +is_obsolete: true + +[Term] +id: PATO:0000749 +name: obsolete gait value +is_obsolete: true + +[Term] +id: PATO:0000750 +name: obsolete learning and memory value +is_obsolete: true + +[Term] +id: PATO:0000751 +name: obsolete locomotor activity value +is_obsolete: true + +[Term] +id: PATO:0000752 +name: obsolete mating value +is_obsolete: true + +[Term] +id: PATO:0000753 +name: obsolete spontaneous activity value +is_obsolete: true + +[Term] +id: PATO:0000754 +name: obsolete startle response +is_obsolete: true + +[Term] +id: PATO:0000755 +name: obsolete vocalization value +is_obsolete: true + +[Term] +id: PATO:0000756 +name: obsolete transfer arousal value +is_obsolete: true + +[Term] +id: PATO:0000757 +name: balanced +def: "A balance quality inhering in a bearer by virtue of the bearer's having balance." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000185 ! balance +disjoint_from: PATO:0000758 ! unbalanced +relationship: is_opposite_of PATO:0000758 ! unbalanced + +[Term] +id: PATO:0000758 +name: unbalanced +def: "A balance quality inhering in a bearer by virtue of the bearer's lacking balance." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000185 ! balance +relationship: is_opposite_of PATO:0000757 ! balanced + +[Term] +id: PATO:0000759 +name: bang sensitive +def: "A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting paralytic behaviour when subjected to mechanical shock." [PATOC:flybase] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000186 ! behavioral quality +relationship: has_part PATO:0000763 ! paralysed + +[Term] +id: PATO:0000760 +name: increased behavioural activity +def: "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity." [PATOC:GVG] +subset: value_slim +synonym: "hyperactive" EXACT [] +is_a: PATO:0001707 ! behavioural active +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001707 ! behavioural active +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000761 ! decreased behavioural activity + +[Term] +id: PATO:0000761 +name: decreased behavioural activity +def: "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity." [PATOC:GVG] +subset: value_slim +synonym: "hypoactive" EXACT [] +is_a: PATO:0001707 ! behavioural active +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001707 ! behavioural active +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000760 ! increased behavioural activity + +[Term] +id: PATO:0000762 +name: obsolete impaired +def: "Diminished, damaged, or weakened." [answers.com:answers.com] +subset: value_slim +is_obsolete: true +consider: PATO:0001624 + +[Term] +id: PATO:0000763 +name: paralysed +def: "A behavioral quality inhering in a bearer by virtue of the bearer's being affected by loss of the ability to move a body part." [PATOC:GVG] +subset: value_slim +synonym: "palsy" NARROW [] +is_a: PATO:0002076 ! movement behavioral quality + +[Term] +id: PATO:0000764 +name: passive +def: "A behavioral quality inhering in a bearer by virtue of the bearer's receiving or being subjected to an action without responding or initiating an action in return." [www.answers.com:www.answers.com] +subset: value_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0000765 +name: obsolete absolute consumption value +is_obsolete: true + +[Term] +id: PATO:0000766 +name: obsolete relative consumption value +is_obsolete: true + +[Term] +id: PATO:0000767 +name: obsolete increased consumption +def: "A consumption which is relatively high." [PATOC:GVG] +comment: Use GO:0007631 +subset: relational_slim +subset: value_slim +synonym: "high consumption" EXACT [] +synonym: "increased propensity to consume" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000768 +name: obsolete decreased consumption +def: "A consumption which is relatively low." [PATOC:GVG] +comment: Use GO:0007631 +subset: relational_slim +subset: value_slim +synonym: "decreased propensity to consume" RELATED [] +synonym: "low consumption" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0000769 +name: coordinated +def: "A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000188 ! coordination +disjoint_from: PATO:0000770 ! uncoordinated +relationship: is_opposite_of PATO:0000770 ! uncoordinated + +[Term] +id: PATO:0000770 +name: uncoordinated +def: "A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000188 ! coordination +relationship: is_opposite_of PATO:0000769 ! coordinated + +[Term] +id: PATO:0000771 +name: aversion +def: "A preference quality in a bearer by virtue of the bearer's disliking a perceived stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000773 ! preference +disjoint_from: PATO:0000772 ! indifference + +[Term] +id: PATO:0000772 +name: indifference +def: "A preference quality in a bearer by virtue of the bearer's having no preference to a perceived stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000773 ! preference + +[Term] +id: PATO:0000773 +name: preference +def: "A discrimination quality in a bearer by virtue of the bearer's liking a perceived stimulus." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0000189 ! discrimination + +[Term] +id: PATO:0000774 +name: obsolete bizarre gate +is_obsolete: true + +[Term] +id: PATO:0000775 +name: obsolete learning value +is_obsolete: true + +[Term] +id: PATO:0000776 +name: obsolete memory value +is_obsolete: true + +[Term] +id: PATO:0000777 +name: obsolete long term memory value +is_obsolete: true + +[Term] +id: PATO:0000778 +name: obsolete short term memory value +is_obsolete: true + +[Term] +id: PATO:0000779 +name: obsolete absolute locomotor activity value +is_obsolete: true + +[Term] +id: PATO:0000780 +name: obsolete relative locomotor activity value +is_obsolete: true + +[Term] +id: PATO:0000781 +name: obsolete circulatory function value +is_obsolete: true + +[Term] +id: PATO:0000782 +name: obsolete defensive function value +is_obsolete: true + +[Term] +id: PATO:0000783 +name: obsolete digestive function value +is_obsolete: true + +[Term] +id: PATO:0000784 +name: obsolete excretory function value +is_obsolete: true + +[Term] +id: PATO:0000785 +name: obsolete muscle function value +is_obsolete: true + +[Term] +id: PATO:0000786 +name: obsolete neural function value +is_obsolete: true + +[Term] +id: PATO:0000787 +name: obsolete neurobehavioral function value +is_obsolete: true + +[Term] +id: PATO:0000788 +name: obsolete reproductive function value +is_obsolete: true + +[Term] +id: PATO:0000789 +name: obsolete respiratory function value +is_obsolete: true + +[Term] +id: PATO:0000790 +name: obsolete heart rate value +is_obsolete: true + +[Term] +id: PATO:0000791 +name: obsolete immune function value +is_obsolete: true + +[Term] +id: PATO:0000792 +name: obsolete repair function value +is_obsolete: true + +[Term] +id: PATO:0000793 +name: obsolete immubocompetent value +is_obsolete: true + +[Term] +id: PATO:0000794 +name: obsolete immunodeficient value +is_obsolete: true + +[Term] +id: PATO:0000795 +name: obsolete healing value +is_obsolete: true + +[Term] +id: PATO:0000796 +name: obsolete regeneration value +is_obsolete: true + +[Term] +id: PATO:0000797 +name: obsolete urination value +is_obsolete: true + +[Term] +id: PATO:0000798 +name: obsolete defecation value +is_obsolete: true + +[Term] +id: PATO:0000799 +name: obsolete muscle elevation value +is_obsolete: true + +[Term] +id: PATO:0000800 +name: obsolete muscle strength value +is_obsolete: true + +[Term] +id: PATO:0000801 +name: obsolete motor function value +is_obsolete: true + +[Term] +id: PATO:0000802 +name: obsolete sensory function value +is_obsolete: true + +[Term] +id: PATO:0000803 +name: obsolete tactile response value +is_obsolete: true + +[Term] +id: PATO:0000804 +name: obsolete motor performance value +is_obsolete: true + +[Term] +id: PATO:0000805 +name: obsolete auditory value +is_obsolete: true + +[Term] +id: PATO:0000806 +name: obsolete olfactory value +is_obsolete: true + +[Term] +id: PATO:0000807 +name: obsolete proprioreception value +is_obsolete: true + +[Term] +id: PATO:0000808 +name: obsolete reflex value +is_obsolete: true + +[Term] +id: PATO:0000809 +name: obsolete taste value +is_obsolete: true + +[Term] +id: PATO:0000810 +name: obsolete touch value +is_obsolete: true + +[Term] +id: PATO:0000811 +name: obsolete visual value +is_obsolete: true + +[Term] +id: PATO:0000812 +name: obsolete odor acuity value +is_obsolete: true + +[Term] +id: PATO:0000813 +name: obsolete odor type value +is_obsolete: true + +[Term] +id: PATO:0000814 +name: obsolete taste acuity value +is_obsolete: true + +[Term] +id: PATO:0000815 +name: obsolete absolute odor acuity value +is_obsolete: true + +[Term] +id: PATO:0000816 +name: obsolete relative odor acuity value +is_obsolete: true + +[Term] +id: PATO:0000817 +name: obsolete anosmia +is_obsolete: true + +[Term] +id: PATO:0000818 +name: obsolete concentration_quantity +is_obsolete: true + +[Term] +id: PATO:0000819 +name: obsolete quantity +is_obsolete: true + +[Term] +id: PATO:0000820 +name: obsolete absolute taste acuity value +is_obsolete: true + +[Term] +id: PATO:0000821 +name: obsolete relative taste acuity value +is_obsolete: true + +[Term] +id: PATO:0000822 +name: obsolete taste type value +is_obsolete: true + +[Term] +id: PATO:0000823 +name: obsolete quinine taste +is_obsolete: true + +[Term] +id: PATO:0000824 +name: obsolete water taste +is_obsolete: true + +[Term] +id: PATO:0000825 +name: obsolete visual ability value +is_obsolete: true + +[Term] +id: PATO:0000826 +name: obsolete visual acuity value +is_obsolete: true + +[Term] +id: PATO:0000827 +name: obsolete visual threshold value +is_obsolete: true + +[Term] +id: PATO:0000828 +name: obsolete visual placing value +is_obsolete: true + +[Term] +id: PATO:0000829 +name: obsolete absolute visual ability value +is_obsolete: true + +[Term] +id: PATO:0000830 +name: obsolete relative visual ability value +is_obsolete: true + +[Term] +id: PATO:0000831 +name: obsolete absolute visual acuity value +is_obsolete: true + +[Term] +id: PATO:0000832 +name: obsolete relative visual acuity value +is_obsolete: true + +[Term] +id: PATO:0000833 +name: obsolete absolute visual threshold value +is_obsolete: true + +[Term] +id: PATO:0000834 +name: obsolete relative visual threshold value +is_obsolete: true + +[Term] +id: PATO:0000835 +name: obsolete auditory acuity value +is_obsolete: true + +[Term] +id: PATO:0000836 +name: obsolete auditory ability value +is_obsolete: true + +[Term] +id: PATO:0000837 +name: obsolete auditory threshold value +is_obsolete: true + +[Term] +id: PATO:0000838 +name: obsolete absolute auditory ability value +is_obsolete: true + +[Term] +id: PATO:0000839 +name: obsolete relative auditory ability value +is_obsolete: true + +[Term] +id: PATO:0000840 +name: obsolete absolute auditory acuity value +is_obsolete: true + +[Term] +id: PATO:0000841 +name: obsolete relative auditory acuity value +is_obsolete: true + +[Term] +id: PATO:0000842 +name: obsolete absolute auditory threshold value +is_obsolete: true + +[Term] +id: PATO:0000843 +name: obsolete relative auditory threshold value +is_obsolete: true + +[Term] +id: PATO:0000844 +name: obsolete auditory acuity +is_obsolete: true + +[Term] +id: PATO:0000845 +name: obsolete auditory ability +is_obsolete: true + +[Term] +id: PATO:0000846 +name: obsolete auditory threshold +is_obsolete: true + +[Term] +id: PATO:0000847 +name: obsolete absolute auditory acuity +is_obsolete: true + +[Term] +id: PATO:0000848 +name: obsolete relative auditory acuity +is_obsolete: true + +[Term] +id: PATO:0000849 +name: obsolete absolute auditory ability +is_obsolete: true + +[Term] +id: PATO:0000850 +name: obsolete relative auditory ability +is_obsolete: true + +[Term] +id: PATO:0000851 +name: obsolete absolute auditory threshold +is_obsolete: true + +[Term] +id: PATO:0000852 +name: obsolete relative auditory threshold +is_obsolete: true + +[Term] +id: PATO:0000853 +name: obsolete blinking reflex value +is_obsolete: true + +[Term] +id: PATO:0000854 +name: obsolete contact righting reflex value +is_obsolete: true + +[Term] +id: PATO:0000855 +name: obsolete corneal reflex value +is_obsolete: true + +[Term] +id: PATO:0000856 +name: obsolete flinch reflex value +is_obsolete: true + +[Term] +id: PATO:0000857 +name: obsolete lordosis reflex value +is_obsolete: true + +[Term] +id: PATO:0000858 +name: obsolete ocular reflex value +is_obsolete: true + +[Term] +id: PATO:0000859 +name: obsolete pinna reflex value +is_obsolete: true + +[Term] +id: PATO:0000860 +name: obsolete postural reflex value +is_obsolete: true + +[Term] +id: PATO:0000861 +name: obsolete proboscis extension reflex value +is_obsolete: true + +[Term] +id: PATO:0000862 +name: obsolete pupillary reflex value +is_obsolete: true + +[Term] +id: PATO:0000863 +name: obsolete righting reflex value +is_obsolete: true + +[Term] +id: PATO:0000864 +name: obsolete spinal reflex value +is_obsolete: true + +[Term] +id: PATO:0000865 +name: obsolete startle reflex value +is_obsolete: true + +[Term] +id: PATO:0000866 +name: obsolete suckling reflex value +is_obsolete: true + +[Term] +id: PATO:0000867 +name: obsolete swallowing reflex value +is_obsolete: true + +[Term] +id: PATO:0000868 +name: obsolete vibrissae reflex value +is_obsolete: true + +[Term] +id: PATO:0000869 +name: obsolete prepulse inhibition value +is_obsolete: true + +[Term] +id: PATO:0000870 +name: obsolete relative neurobehavioral function value +is_obsolete: true + +[Term] +id: PATO:0000871 +name: obsolete aggressive +is_obsolete: true + +[Term] +id: PATO:0000872 +name: obsolete anxious +is_obsolete: true + +[Term] +id: PATO:0000873 +name: obsolete cataleptic +is_obsolete: true + +[Term] +id: PATO:0000874 +name: obsolete fearful +is_obsolete: true + +[Term] +id: PATO:0000875 +name: obsolete irritable +is_obsolete: true + +[Term] +id: PATO:0000876 +name: obsolete respiratory rate value +is_obsolete: true + +[Term] +id: PATO:0000877 +name: obsolete absolute respiratory rate value +is_obsolete: true + +[Term] +id: PATO:0000878 +name: obsolete relative respiratory rate value +is_obsolete: true + +[Term] +id: PATO:0000879 +name: obsolete fecundity value +is_obsolete: true + +[Term] +id: PATO:0000880 +name: obsolete fertility value +is_obsolete: true + +[Term] +id: PATO:0000881 +name: obsolete gestational period value +is_obsolete: true + +[Term] +id: PATO:0000882 +name: obsolete litter size value +is_obsolete: true + +[Term] +id: PATO:0000883 +name: obsolete female fertility value +is_obsolete: true + +[Term] +id: PATO:0000884 +name: obsolete hybrid fertility value +is_obsolete: true + +[Term] +id: PATO:0000885 +name: obsolete male fertility value +is_obsolete: true + +[Term] +id: PATO:0000886 +name: obsolete absolute litter size value +is_obsolete: true + +[Term] +id: PATO:0000887 +name: obsolete relative litter size value +is_obsolete: true + +[Term] +id: PATO:0000888 +name: female fertile +def: "A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000277 ! female fertility +disjoint_from: PATO:0000892 ! female sterile +relationship: is_opposite_of PATO:0000892 ! female sterile + +[Term] +id: PATO:0000889 +name: obsolete cytoplasmic male sterility value +is_obsolete: true + +[Term] +id: PATO:0000890 +name: male sterile +def: "A male fertility quality inhering in a male by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "male infertile" RELATED [] +is_a: PATO:0000956 ! sterile +disjoint_from: PATO:0000891 ! male fertile +relationship: is_opposite_of PATO:0000891 ! male fertile + +[Term] +id: PATO:0000891 +name: male fertile +def: "A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000279 ! male fertility +relationship: is_opposite_of PATO:0000890 ! male sterile + +[Term] +id: PATO:0000892 +name: female sterile +def: "A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "female infertile" RELATED [] +is_a: PATO:0000956 ! sterile +relationship: is_opposite_of PATO:0000888 ! female fertile + +[Term] +id: PATO:0000893 +name: obsolete backcross fertility value +is_obsolete: true + +[Term] +id: PATO:0000894 +name: obsolete cytoplasmic sterility value +is_obsolete: true + +[Term] +id: PATO:0000895 +name: obsolete f1 fertility value +is_obsolete: true + +[Term] +id: PATO:0000896 +name: obsolete f2 fertility value +is_obsolete: true + +[Term] +id: PATO:0000897 +name: obsolete germ line dependent fertility value +is_obsolete: true + +[Term] +id: PATO:0000898 +name: obsolete intercross fertility value +is_obsolete: true + +[Term] +id: PATO:0000899 +name: obsolete soma dependent fertility value +is_obsolete: true + +[Term] +id: PATO:0000900 +name: obsolete backcross fertile +is_obsolete: true + +[Term] +id: PATO:0000901 +name: obsolete backcross sterile +synonym: "backcross infertile" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000902 +name: obsolete chinsurah boro type value +is_obsolete: true + +[Term] +id: PATO:0000903 +name: obsolete cms-hl type value +is_obsolete: true + +[Term] +id: PATO:0000904 +name: obsolete wild abortive value +is_obsolete: true + +[Term] +id: PATO:0000905 +name: obsolete f1 fertile +is_obsolete: true + +[Term] +id: PATO:0000906 +name: obsolete f1 sterile +synonym: "F1 infertile" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000907 +name: obsolete f2 fertile +is_obsolete: true + +[Term] +id: PATO:0000908 +name: obsolete f2 sterile +synonym: "F2 infertile" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000909 +name: obsolete intercross fertile +is_obsolete: true + +[Term] +id: PATO:0000910 +name: obsolete intercross sterile +synonym: "intercross infertile" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000911 +name: decreased rate +def: "A rate which is relatively low." [PATO:GVG] +subset: mpath_slim +subset: value_slim +synonym: "slow rate" EXACT [] +is_a: PATO:0000161 ! rate +is_a: PATO:0002302 ! decreased process quality +intersection_of: PATO:0000161 ! rate +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000912 ! increased rate + +[Term] +id: PATO:0000912 +name: increased rate +def: "A rate which is relatively high." [PATO:GVG] +subset: mpath_slim +subset: value_slim +synonym: "fast rate" EXACT [] +synonym: "high rate" EXACT [] +is_a: PATO:0000161 ! rate +is_a: PATO:0002304 ! increased process quality +intersection_of: PATO:0000161 ! rate +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000911 ! decreased rate + +[Term] +id: PATO:0000913 +name: obsolete qualitative value +is_obsolete: true + +[Term] +id: PATO:0000914 +name: obsolete continuant +is_obsolete: true + +[Term] +id: PATO:0000915 +name: thickness +def: "A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0000916 +name: obsolete absolute thickness +is_obsolete: true + +[Term] +id: PATO:0000917 +name: obsolete relative thickness +is_obsolete: true + +[Term] +id: PATO:0000918 +name: volume +def: "A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies." [PATOC:GVG] +subset: attribute_slim +subset: mpath_slim +subset: scalar_slim +is_a: PATO:0001710 ! 3-D extent + +[Term] +id: PATO:0000919 +name: obsolete absolute volume +is_obsolete: true + +[Term] +id: PATO:0000920 +name: obsolete relative volume +is_obsolete: true + +[Term] +id: PATO:0000921 +name: width +def: "A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +synonym: "breadth" RELATED [] +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0000922 +name: obsolete absolute width +is_obsolete: true + +[Term] +id: PATO:0000923 +name: obsolete relative width +is_obsolete: true + +[Term] +id: PATO:0000924 +name: obsolete relative enzyme function +is_obsolete: true + +[Term] +id: PATO:0000925 +name: obsolete absolute enzyme function +is_obsolete: true + +[Term] +id: PATO:0000926 +name: obsolete intercross fertility +is_obsolete: true + +[Term] +id: PATO:0000927 +name: photosensitivity +def: "A quality inhering in a bearer by virtue of the bearer's disposition to being sensitivity to the action of radiant energy." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000085 ! sensitivity toward + +[Term] +id: PATO:0000928 +name: obsolete absolute photosensitivity +is_obsolete: true + +[Term] +id: PATO:0000929 +name: obsolete light intensivity sensitivity +is_obsolete: true + +[Term] +id: PATO:0000930 +name: obsolete light_quality sensitivity +is_obsolete: true + +[Term] +id: PATO:0000931 +name: obsolete blue light sensitivity +is_obsolete: true + +[Term] +id: PATO:0000932 +name: obsolete far red light sensitivity +is_obsolete: true + +[Term] +id: PATO:0000933 +name: obsolete red light sensitivity +is_obsolete: true + +[Term] +id: PATO:0000934 +name: obsolete u v light sensitivity +is_obsolete: true + +[Term] +id: PATO:0000935 +name: obsolete relative photosensitivity +is_obsolete: true + +[Term] +id: PATO:0000936 +name: truncated +def: "A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly by having or as if having an end or point cut off." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +synonym: "truncate" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000937 +name: disorganized +def: "A structural quality inhering in a bearer by virtue of the bearer's lacking organisation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002264 ! organization quality +disjoint_from: PATO:0000938 ! organized +relationship: is_opposite_of PATO:0000938 ! organized + +[Term] +id: PATO:0000938 +name: organized +def: "A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002264 ! organization quality +relationship: is_opposite_of PATO:0000937 ! disorganized + +[Term] +id: PATO:0000939 +name: obsolete regular shape +subset: mpath_slim +is_obsolete: true + +[Term] +id: PATO:0000940 +name: obsolete irregular shape +subset: mpath_slim +is_obsolete: true + +[Term] +id: PATO:0000941 +name: vacuolated +def: "A structural quality inhering in a cytoplasm that contains fluid filled cavities." [PATOC:mh] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0002014 ! structure, cavities + +[Term] +id: PATO:0000944 +name: sharpness +def: "A shape quality inhering in a bearer by virtue of the bearer's having a sharp or tapered end or point." [PATOC:GVG] +subset: attribute_slim +subset: cell_quality +synonym: "apiculate" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000945 +name: epinastic +def: "A shape quality inhering in a bearer by virtue of the bearer's exhibiting a downward bending of its leaves or other plant parts." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000946 +name: oblong +def: "A shape quality inhering in a bearer by virtue of the bearer's having a somewhat elongated form with approximately parallel sides." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0002006 ! 2-D shape + +[Term] +id: PATO:0000947 +name: elliptic +def: "A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "ellipse-shaped" EXACT [] +synonym: "ellipsoid" EXACT [] +synonym: "elliptical" EXACT [] +synonym: "oval" RELATED [] +synonym: "ovoid" RELATED [] +is_a: PATO:0002318 ! superelliptic + +[Term] +id: PATO:0000948 +name: heart shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having a sinus or rounded lobe at the base." [PATOC:GVG] +comment: Having the shape of heart. +subset: cell_quality +subset: value_slim +synonym: "cordate" EXACT [] +synonym: "cordiform" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0000949 +name: fasciated +def: "A shape quality inhering in a bearer by virtue of the bearer's being abnormally flattened or coalesced." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000950 +name: grey +def: "A color between white and black colors." [http://en.wikipedia.org/wiki/Grey] +subset: mpath_slim +subset: value_slim +synonym: "plumbeous" RELATED [] +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000951 +name: purple +def: "A color that falls about midway between red and blue in hue." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000952 +name: brown +def: "A color consisting of dark orange, red, of very low intensity." [Wikipedia:http\://en.wikipedia.org/wiki/Brown] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000953 +name: orange +def: "A color hue with high-medium wavelength that of that portion of the visible spectrum lying between red and yellow, evoked in the human observer by radiant energy with wavelengths of approximately 585 to 620 nanometers." [Wikipedia:http\://en.wikipedia.org/wiki/Orange] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000954 +name: pink +def: "Red color having medium to high brightness and low to moderate saturation." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000322 ! red + +[Term] +id: PATO:0000955 +name: fertile +def: "A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000274 ! fertility +disjoint_from: PATO:0000956 ! sterile +relationship: is_opposite_of PATO:0000956 ! sterile + +[Term] +id: PATO:0000956 +name: sterile +def: "A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000274 ! fertility +relationship: is_opposite_of PATO:0000955 ! fertile + +[Term] +id: PATO:0000957 +name: opacity +def: "An optical quality which obtains by virtue of the ability of the bearer to absorb visible light." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0000958 +name: obsolete opacity value +is_obsolete: true + +[Term] +id: PATO:0000959 +name: obsolete relative opacity +is_obsolete: true + +[Term] +id: PATO:0000960 +name: obsolete absolute opacity +is_obsolete: true + +[Term] +id: PATO:0000961 +name: obsolete relative opacity value +is_obsolete: true + +[Term] +id: PATO:0000962 +name: obsolete absolute opacity value +is_obsolete: true + +[Term] +id: PATO:0000963 +name: opaque +def: "A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "clouding" RELATED [] +synonym: "cloudy" RELATED [] +synonym: "non-transparent" EXACT [] +is_a: PATO:0000957 ! opacity +relationship: is_opposite_of PATO:0000964 ! transparent + +[Term] +id: PATO:0000964 +name: transparent +def: "A optical quality inhering in a bearer by virtue of the bearer's lacking opacity." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "clear" EXACT [] +synonym: "hyaline" EXACT [] +is_a: PATO:0000957 ! opacity +relationship: is_opposite_of PATO:0000963 ! opaque + +[Term] +id: PATO:0000965 +name: symmetry +def: "A pattern quality of inhering in a bearer by virtue of the correspondence in size, shape, and relative position of the bearer's parts on opposite sides of a dividing line or median plane or about a center or axis." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0000966 +name: obsolete symmetry value +is_obsolete: true + +[Term] +id: PATO:0000967 +name: undulate +alt_id: PATO:0001610 +alt_id: PATO:0001939 +def: "A shape quality inhering in a bearer by virtue of the bearer's having a sinuate margin and rippled surface." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "rippled" RELATED [] +synonym: "sinuate" RELATED [] +synonym: "undulated" EXACT [] +synonym: "undulating" EXACT [] +synonym: "waved" EXACT [] +synonym: "wavy" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000968 +name: obsolete albino value +is_obsolete: true + +[Term] +id: PATO:0000969 +name: dwarf-like +def: "A size quality inhering in a bearer by virtue of the bearer's being abnormally small." [Answers.com:Answers.com] +subset: value_slim +synonym: "dwarfed" EXACT [] +is_a: PATO:0000587 ! decreased size + +[Term] +id: PATO:0000970 +name: permeability +def: "A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion)." [Biology-online:Biology-online] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000971 +name: obsolete absolute permeability +is_obsolete: true + +[Term] +id: PATO:0000972 +name: obsolete relative permeability +is_obsolete: true + +[Term] +id: PATO:0000973 +name: porosity +def: "A permeability quality inhering in a bearer by virtue of the bearer's disposition to admit the passage of gas or liquid through pores or interstices." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000970 ! permeability + +[Term] +id: PATO:0000974 +name: obsolete relative porosity +is_obsolete: true + +[Term] +id: PATO:0000975 +name: obsolete absolute porosity +is_obsolete: true + +[Term] +id: PATO:0000976 +name: obsolete permeability value +is_obsolete: true + +[Term] +id: PATO:0000977 +name: obsolete absolute permeability value +is_obsolete: true + +[Term] +id: PATO:0000978 +name: obsolete relative permeability value +is_obsolete: true + +[Term] +id: PATO:0000979 +name: obsolete porosity value +is_obsolete: true + +[Term] +id: PATO:0000980 +name: obsolete absolute porosity value +is_obsolete: true + +[Term] +id: PATO:0000981 +name: obsolete relative porosity value +is_obsolete: true + +[Term] +id: PATO:0000982 +name: permeable +def: "A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion)." [Biology-online:Biology-online] +subset: disposition_slim +subset: value_slim +synonym: "porous" RELATED [] +is_a: PATO:0000970 ! permeability +disjoint_from: PATO:0000983 ! impermeable +relationship: is_opposite_of PATO:0000983 ! impermeable + +[Term] +id: PATO:0000983 +name: impermeable +def: "A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion)." [Biology-online:Biology-online] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000970 ! permeability +relationship: is_opposite_of PATO:0000982 ! permeable + +[Term] +id: PATO:0000984 +name: porous +def: "A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000973 ! porosity +disjoint_from: PATO:0000985 ! non-porous +relationship: is_opposite_of PATO:0000985 ! non-porous + +[Term] +id: PATO:0000985 +name: non-porous +def: "A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000973 ! porosity +relationship: is_opposite_of PATO:0000984 ! porous + +[Term] +id: PATO:0000986 +name: obsolete absolute consistency +is_obsolete: true + +[Term] +id: PATO:0000987 +name: obsolete relative consistency +is_obsolete: true + +[Term] +id: PATO:0000988 +name: obsolete relative consistency value +is_obsolete: true + +[Term] +id: PATO:0000989 +name: obsolete absolute consistency value +is_obsolete: true + +[Term] +id: PATO:0000990 +name: obsolete consistent +is_obsolete: true + +[Term] +id: PATO:0000991 +name: obsolete inconsistent +is_obsolete: true + +[Term] +id: PATO:0000992 +name: viscosity +def: "A physical quality of a liquid inhering in a bearer by virtue of the bearer's disposition to internal resistance to flow." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001548 ! quality of a liquid + +[Term] +id: PATO:0000993 +name: obsolete relative viscosity +is_obsolete: true + +[Term] +id: PATO:0000994 +name: obsolete absolute viscosity +is_obsolete: true + +[Term] +id: PATO:0000995 +name: obsolete viscosity value +is_obsolete: true + +[Term] +id: PATO:0000996 +name: obsolete absolute viscosity value +is_obsolete: true + +[Term] +id: PATO:0000997 +name: obsolete relative viscosity value +is_obsolete: true + +[Term] +id: PATO:0000998 +name: viscous +def: "A viscosity quality inhering in a bearer by virtue of the bearer's having viscosity." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000992 ! viscosity + +[Term] +id: PATO:0000999 +name: alternation +def: "A quality of a single process inhering in a bearer by virtue of the bearer's successive change from one thing or state to another and back again." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000057 ! occurrence + +[Term] +id: PATO:0001000 +name: obsolete relative alternation +is_obsolete: true + +[Term] +id: PATO:0001001 +name: obsolete absolute alternation +is_obsolete: true + +[Term] +id: PATO:0001002 +name: obsolete alternation value +is_obsolete: true + +[Term] +id: PATO:0001003 +name: obsolete relative alternation value +is_obsolete: true + +[Term] +id: PATO:0001004 +name: obsolete absolute alternation value +is_obsolete: true + +[Term] +id: PATO:0001005 +name: latency +def: "A time quality inhering in a bearer by virtue of the time it elapses for the bearer to respond to a stimulus." [PATOC:GVG] +comment: This class is a candidate for obsoletion. The definition is not clear, and the placement under "delayed" is not consistent with the definition. +subset: value_slim +is_a: PATO:0000502 ! delayed + +[Term] +id: PATO:0001006 +name: obsolete absolute latency +is_obsolete: true + +[Term] +id: PATO:0001007 +name: obsolete relative latency +is_obsolete: true + +[Term] +id: PATO:0001008 +name: obsolete absolute latency value +is_obsolete: true + +[Term] +id: PATO:0001009 +name: obsolete relative latency value +is_obsolete: true + +[Term] +id: PATO:0001010 +name: obsolete relative intensity +is_obsolete: true + +[Term] +id: PATO:0001011 +name: obsolete absolute intensity +is_obsolete: true + +[Term] +id: PATO:0001012 +name: obsolete relative intensity value +is_obsolete: true + +[Term] +id: PATO:0001013 +name: obsolete absolute intensity value +is_obsolete: true + +[Term] +id: PATO:0001014 +name: obsolete absolute occurence +is_obsolete: true + +[Term] +id: PATO:0001015 +name: obsolete relative occurence +is_obsolete: true + +[Term] +id: PATO:0001016 +name: obsolete absolute occurence value +is_obsolete: true + +[Term] +id: PATO:0001017 +name: obsolete relative occurence value +is_obsolete: true + +[Term] +id: PATO:0001018 +name: physical quality +alt_id: PATO:0002079 +def: "A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities." [PATOC:GVG] +subset: attribute_slim +synonym: "relational physical quality" EXACT [] +xref: Wikipedia:Physical_property +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001019 +name: mass density +def: "A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +synonym: "density" RELATED [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001020 +name: damage +def: "A structural quality inhering in a bearer by virtue of whether the bearer has been harmed or injured or spoiled." [WordNet:WordNet] +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001021 +name: energy +def: "A physical quality inhering in a bearer by virtue of the bearer's capacity to do work." [Wikipedia:http\://en.wikipedia.org/wiki/Energy] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001022 +name: impulse +def: "A physical quality inhering in a bearer by virtue of the amount of momentum caused a certain force will produce over time." [url:http\://www.wikipremed.com/home_resources/010104_momentum_concepts.pdf] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001023 +name: momentum +def: "A physical quality inhering in a bearer by virtue of the bearer's velocity multiplied by its mass." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001906 ! movement quality + +[Term] +id: PATO:0001024 +name: power +def: "A physical quality inhering in a bearer by virtue of the bearer's rate of doing work." [Wikipedia:http\://en.wikipedia.org/wiki/Power] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001025 +name: pressure +def: "A physical quality that inheres in a bearer by virtue of the bearer's amount of force per unit area it exerts." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001026 +name: work +def: "A physical quality which is equal to the energy transferred by a force to a moving object." [Wikipedia:http\://en.wikipedia.org/wiki/Work] +subset: attribute_slim +synonym: "W" EXACT [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001027 +name: obsolete physical quantity +is_obsolete: true + +[Term] +id: PATO:0001028 +name: acceleration +def: "A physical quality inhering in a bearer by virtue of the rate of change of the bearer's velocity in either speed or direction." [Wikipedia:http\://en.wikipedia.org/wiki/Acceleration] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001906 ! movement quality + +[Term] +id: PATO:0001029 +name: efficiency +def: "A physical quality inhering in a bearer by virtue of ratio of the bearer's output to the bearer's input." [WordNet:WordNet] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001030 +name: flux +def: "A physical quality that exists by virtue of the rate of flow of the bearer across a given surface." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001906 ! movement quality + +[Term] +id: PATO:0001031 +name: elasticity +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to recover its size and shape after deformation in any way." [merriam-webster:merriam-webster] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001033 +name: obsolete stiffness +is_obsolete: true + +[Term] +id: PATO:0001034 +name: strain +def: "A physical quality inhering in a bearer by virtue of the relative change in the bearer's length or the bearer's volume when being stretched or squashed." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001035 +name: force +def: "A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum." [thesaurus.maths:thesaurus.maths] +subset: attribute_slim +subset: scalar_slim +synonym: "force amplitude" EXACT [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001036 +name: obsolete relative life span +is_obsolete: true + +[Term] +id: PATO:0001037 +name: obsolete absolute life span +is_obsolete: true + +[Term] +id: PATO:0001038 +name: obsolete ratio +is_obsolete: true + +[Term] +id: PATO:0001039 +name: obsolete absolute ratio +is_obsolete: true + +[Term] +id: PATO:0001040 +name: obsolete relative ratio +is_obsolete: true + +[Term] +id: PATO:0001041 +name: obsolete relative amplitude +is_obsolete: true + +[Term] +id: PATO:0001042 +name: obsolete absolute amplitude +is_obsolete: true + +[Term] +id: PATO:0001043 +name: susceptibility toward +def: "A quality inhering in an entity by virtue of the bearer's propensity to resist an external stimulus." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "susceptibility" EXACT [] +is_a: PATO:0000085 ! sensitivity toward +relationship: is_opposite_of PATO:0001046 ! resistance to + +[Term] +id: PATO:0001044 +name: obsolete absolute power +is_obsolete: true + +[Term] +id: PATO:0001045 +name: obsolete relative power +is_obsolete: true + +[Term] +id: PATO:0001046 +name: resistance to +def: "A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +subset: scalar_slim +synonym: "resistance" EXACT [] +is_a: PATO:0001995 ! organismal quality +relationship: is_opposite_of PATO:0001043 ! susceptibility toward + +[Term] +id: PATO:0001047 +name: obsolete absolute resistance +is_obsolete: true + +[Term] +id: PATO:0001048 +name: obsolete relative resistance +is_obsolete: true + +[Term] +id: PATO:0001049 +name: obsolete absolute susceptibility +is_obsolete: true + +[Term] +id: PATO:0001050 +name: obsolete relative susceptibility +is_obsolete: true + +[Term] +id: PATO:0001051 +name: acute angle to +def: "An angle which is less than 90 degrees." [thesaurus.maths:thesaurus.maths] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001052 +name: obtuse angle to +def: "An angle which is between 90 degrees and 180 degrees to another entity." [thesaurus.maths:thesaurus.maths] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001053 +name: convex angle to +def: "An angle which is less than 180 degrees to another entity." [maths.org:maths.org] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001054 +name: internal angle +def: "A convex angle that is inside two adjacent sides of a polygon." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001053 ! convex angle to + +[Term] +id: PATO:0001055 +name: reflex angle to +def: "An angular placement quality inhering in a bearer by virtue of the bearer's placement at an angle that is greater than 180 degrees but less than 360 degrees to another entity." [thesaurus.maths:thesaurus.maths] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001056 +name: obsolete number +is_obsolete: true + +[Term] +id: PATO:0001057 +name: obsolete relative acceleration +is_obsolete: true + +[Term] +id: PATO:0001058 +name: obsolete absolute acceleration +is_obsolete: true + +[Term] +id: PATO:0001059 +name: obsolete relative efficiency +is_obsolete: true + +[Term] +id: PATO:0001060 +name: obsolete absolute efficiency +is_obsolete: true + +[Term] +id: PATO:0001061 +name: obsolete relative elasticity +is_obsolete: true + +[Term] +id: PATO:0001062 +name: obsolete absolute elasticity +is_obsolete: true + +[Term] +id: PATO:0001063 +name: obsolete relative flux +is_obsolete: true + +[Term] +id: PATO:0001064 +name: obsolete absolute flux +is_obsolete: true + +[Term] +id: PATO:0001065 +name: obsolete relative stiffness +is_obsolete: true + +[Term] +id: PATO:0001066 +name: obsolete absolute stiffness +is_obsolete: true + +[Term] +id: PATO:0001067 +name: obsolete absolute strain +is_obsolete: true + +[Term] +id: PATO:0001068 +name: obsolete relative strain +is_obsolete: true + +[Term] +id: PATO:0001069 +name: obsolete relative density +is_obsolete: true + +[Term] +id: PATO:0001070 +name: obsolete absolute density +is_obsolete: true + +[Term] +id: PATO:0001071 +name: obsolete relative energy +is_obsolete: true + +[Term] +id: PATO:0001072 +name: obsolete absolute energy +is_obsolete: true + +[Term] +id: PATO:0001073 +name: obsolete relative impulse +is_obsolete: true + +[Term] +id: PATO:0001074 +name: obsolete absolute impulse +is_obsolete: true + +[Term] +id: PATO:0001075 +name: obsolete absolute momentum +is_obsolete: true + +[Term] +id: PATO:0001076 +name: obsolete relative momentum +is_obsolete: true + +[Term] +id: PATO:0001077 +name: obsolete absolute pressure +is_obsolete: true + +[Term] +id: PATO:0001078 +name: obsolete relative pressure +is_obsolete: true + +[Term] +id: PATO:0001079 +name: obsolete absolute work +is_obsolete: true + +[Term] +id: PATO:0001080 +name: obsolete relative work +is_obsolete: true + +[Term] +id: PATO:0001081 +name: obsolete physical measure value +is_obsolete: true + +[Term] +id: PATO:0001082 +name: obsolete damage value +is_obsolete: true + +[Term] +id: PATO:0001083 +name: obsolete acceleration value +is_obsolete: true + +[Term] +id: PATO:0001084 +name: obsolete relative acceleration value +is_obsolete: true + +[Term] +id: PATO:0001085 +name: obsolete absolute acceleration value +is_obsolete: true + +[Term] +id: PATO:0001086 +name: obsolete efficiency value +is_obsolete: true + +[Term] +id: PATO:0001087 +name: obsolete relative efficiency value +is_obsolete: true + +[Term] +id: PATO:0001088 +name: obsolete absolute efficiency value +is_obsolete: true + +[Term] +id: PATO:0001089 +name: obsolete elasticity value +is_obsolete: true + +[Term] +id: PATO:0001090 +name: obsolete absolute elasticity value +is_obsolete: true + +[Term] +id: PATO:0001091 +name: obsolete relative elasticity value +is_obsolete: true + +[Term] +id: PATO:0001092 +name: obsolete flux value +is_obsolete: true + +[Term] +id: PATO:0001093 +name: obsolete relative flux value +is_obsolete: true + +[Term] +id: PATO:0001094 +name: obsolete absolute flux value +is_obsolete: true + +[Term] +id: PATO:0001095 +name: obsolete force value +is_obsolete: true + +[Term] +id: PATO:0001096 +name: obsolete absolute force value +is_obsolete: true + +[Term] +id: PATO:0001097 +name: obsolete relative force value +is_obsolete: true + +[Term] +id: PATO:0001098 +name: obsolete absolute force +is_obsolete: true + +[Term] +id: PATO:0001099 +name: obsolete relative force +is_obsolete: true + +[Term] +id: PATO:0001100 +name: obsolete position value +is_obsolete: true + +[Term] +id: PATO:0001101 +name: obsolete stiffness value +is_obsolete: true + +[Term] +id: PATO:0001102 +name: obsolete absolute stiffness value +is_obsolete: true + +[Term] +id: PATO:0001103 +name: obsolete relative stiffness value +is_obsolete: true + +[Term] +id: PATO:0001104 +name: obsolete strain value +is_obsolete: true + +[Term] +id: PATO:0001105 +name: obsolete absolute strain value +is_obsolete: true + +[Term] +id: PATO:0001106 +name: obsolete relative strain value +is_obsolete: true + +[Term] +id: PATO:0001107 +name: obsolete density value +is_obsolete: true + +[Term] +id: PATO:0001108 +name: obsolete relative amplitude value +is_obsolete: true + +[Term] +id: PATO:0001109 +name: obsolete absolute amplitude value +is_obsolete: true + +[Term] +id: PATO:0001110 +name: obsolete absolute density value +is_obsolete: true + +[Term] +id: PATO:0001111 +name: obsolete relative density value +is_obsolete: true + +[Term] +id: PATO:0001112 +name: obsolete energy value +is_obsolete: true + +[Term] +id: PATO:0001113 +name: obsolete absolute energy value +is_obsolete: true + +[Term] +id: PATO:0001114 +name: obsolete relative energy value +is_obsolete: true + +[Term] +id: PATO:0001115 +name: obsolete impulse value +is_obsolete: true + +[Term] +id: PATO:0001116 +name: obsolete relative impulse value +is_obsolete: true + +[Term] +id: PATO:0001117 +name: obsolete absolute impulse value +is_obsolete: true + +[Term] +id: PATO:0001118 +name: obsolete momentum value +is_obsolete: true + +[Term] +id: PATO:0001119 +name: obsolete absolute momentum value +is_obsolete: true + +[Term] +id: PATO:0001120 +name: obsolete relative momentum value +is_obsolete: true + +[Term] +id: PATO:0001121 +name: obsolete power value +is_obsolete: true + +[Term] +id: PATO:0001122 +name: obsolete absolute power value +is_obsolete: true + +[Term] +id: PATO:0001123 +name: obsolete relative power value +is_obsolete: true + +[Term] +id: PATO:0001124 +name: obsolete pressure value +is_obsolete: true + +[Term] +id: PATO:0001125 +name: obsolete absolute pressure value +is_obsolete: true + +[Term] +id: PATO:0001126 +name: obsolete relative pressure value +is_obsolete: true + +[Term] +id: PATO:0001127 +name: obsolete work value +is_obsolete: true + +[Term] +id: PATO:0001128 +name: obsolete absolute work value +is_obsolete: true + +[Term] +id: PATO:0001129 +name: obsolete relative work value +is_obsolete: true + +[Term] +id: PATO:0001130 +name: obsolete ratio value +is_obsolete: true + +[Term] +id: PATO:0001131 +name: obsolete absolute ratio value +is_obsolete: true + +[Term] +id: PATO:0001132 +name: obsolete relative ratio value +is_obsolete: true + +[Term] +id: PATO:0001133 +name: obsolete immunoglobulin concentration +is_obsolete: true + +[Term] +id: PATO:0001134 +name: obsolete ig a concentration +is_obsolete: true + +[Term] +id: PATO:0001135 +name: obsolete ig d concentration +is_obsolete: true + +[Term] +id: PATO:0001136 +name: obsolete ig e concentration +is_obsolete: true + +[Term] +id: PATO:0001137 +name: obsolete ig g concentration +is_obsolete: true + +[Term] +id: PATO:0001138 +name: obsolete ig m concentration +is_obsolete: true + +[Term] +id: PATO:0001139 +name: obsolete urine glucose composition +is_obsolete: true + +[Term] +id: PATO:0001140 +name: obsolete immunoglobulin concentration value +is_obsolete: true + +[Term] +id: PATO:0001141 +name: obsolete ig a concentration value +is_obsolete: true + +[Term] +id: PATO:0001142 +name: obsolete ig d concentration value +is_obsolete: true + +[Term] +id: PATO:0001143 +name: obsolete ig e concentration value +is_obsolete: true + +[Term] +id: PATO:0001144 +name: obsolete ig g concentration value +is_obsolete: true + +[Term] +id: PATO:0001145 +name: obsolete ig m concentration value +is_obsolete: true + +[Term] +id: PATO:0001146 +name: obsolete resistance value +is_obsolete: true + +[Term] +id: PATO:0001147 +name: obsolete absolute resistance value +is_obsolete: true + +[Term] +id: PATO:0001148 +name: obsolete relative resistance value +is_obsolete: true + +[Term] +id: PATO:0001149 +name: obsolete susceptibility value +is_obsolete: true + +[Term] +id: PATO:0001150 +name: obsolete absolute susceptibility value +is_obsolete: true + +[Term] +id: PATO:0001151 +name: obsolete relative susceptibility value +is_obsolete: true + +[Term] +id: PATO:0001152 +name: susceptible toward +def: "A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "susceptible" EXACT [] +is_a: PATO:0001043 ! susceptibility toward +disjoint_from: PATO:0001153 ! insusceptible toward +relationship: is_opposite_of PATO:0001153 ! insusceptible toward + +[Term] +id: PATO:0001153 +name: insusceptible toward +def: "A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus." [PATO:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "insusceptible" EXACT [] +is_a: PATO:0001043 ! susceptibility toward +relationship: is_opposite_of PATO:0001152 ! susceptible toward + +[Term] +id: PATO:0001154 +name: elongated +def: "A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000052 ! shape +relationship: is_opposite_of PATO:0002364 ! shortened + +[Term] +id: PATO:0001155 +name: obsolete absolute concentration +is_obsolete: true + +[Term] +id: PATO:0001156 +name: obsolete relative concentration +is_obsolete: true + +[Term] +id: PATO:0001157 +name: obsolete absolute concentration value +is_obsolete: true + +[Term] +id: PATO:0001158 +name: obsolete relative concentration value +is_obsolete: true + +[Term] +id: PATO:0001159 +name: concentrated +def: "A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0000033 ! concentration of + +[Term] +id: PATO:0001160 +name: obsolete unconcentrated +is_obsolete: true + +[Term] +id: PATO:0001161 +name: diluted +def: "A concentration which relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0000033 ! concentration of + +[Term] +id: PATO:0001162 +name: increased concentration +def: "A concentration which is higher relative to the normal or average." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "high concentration" EXACT [] +is_a: PATO:0001159 ! concentrated +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001159 ! concentrated +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001163 ! decreased concentration + +[Term] +id: PATO:0001163 +name: decreased concentration +def: "A concentration which is lower relative to the normal or average." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "low concentration" EXACT [] +is_a: PATO:0001159 ! concentrated +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001159 ! concentrated +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001162 ! increased concentration + +[Term] +id: PATO:0001164 +name: dense +def: "A physical quality which inheres in a bearer by virtue of the bearer's exhibiting density." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001019 ! mass density + +[Term] +id: PATO:0001165 +name: obsolete urine enzyme composition value +is_obsolete: true + +[Term] +id: PATO:0001166 +name: obsolete urine enzyme composition +is_obsolete: true + +[Term] +id: PATO:0001167 +name: damaged +def: "A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001020 ! damage +disjoint_from: PATO:0001168 ! undamaged +relationship: is_opposite_of PATO:0001168 ! undamaged + +[Term] +id: PATO:0001168 +name: undamaged +def: "A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001020 ! damage +relationship: is_opposite_of PATO:0001167 ! damaged + +[Term] +id: PATO:0001170 +name: obsolete numerical value +is_obsolete: true + +[Term] +id: PATO:0001171 +name: elastic +def: "An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way." [merriam-webster:merriam-webster] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001031 ! elasticity +disjoint_from: PATO:0001172 ! inelastic +relationship: is_opposite_of PATO:0001172 ! inelastic + +[Term] +id: PATO:0001172 +name: inelastic +def: "An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way." [merriam-webster:merriam-webster] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001031 ! elasticity +relationship: is_opposite_of PATO:0001171 ! elastic + +[Term] +id: PATO:0001173 +name: obsolete urine glucose composition value +is_obsolete: true + +[Term] +id: PATO:0001174 +name: obsolete urine composition +is_obsolete: true + +[Term] +id: PATO:0001175 +name: obsolete urine composition +is_obsolete: true + +[Term] +id: PATO:0001176 +name: obsolete deaf +is_obsolete: true + +[Term] +id: PATO:0001177 +name: obsolete blind +is_obsolete: true + +[Term] +id: PATO:0001178 +name: resistant to +def: "A resistance quality inhering in a bearer by virtue of the bearer's resistance to a stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "resistant" EXACT [] +is_a: PATO:0001046 ! resistance to + +[Term] +id: PATO:0001179 +name: obsolete immune +is_obsolete: true + +[Term] +id: PATO:0001180 +name: obsolete relative response +is_obsolete: true + +[Term] +id: PATO:0001181 +name: obsolete absolute response +is_obsolete: true + +[Term] +id: PATO:0001182 +name: obsolete relative response +is_obsolete: true + +[Term] +id: PATO:0001183 +name: obsolete absolute response value +is_obsolete: true + +[Term] +id: PATO:0001184 +name: obsolete maturity value +is_obsolete: true + +[Term] +id: PATO:0001185 +name: larval +def: "A maturity quality inhering in a bearer by virtue of the bearer's indirect development, undergoing metamorphosis." [Wikipedia:http\://en.wikipedia.org/wiki/Larval] +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001186 +name: prepubescent +def: "A maturity quality inhering in a bearer by virtue of the bearer's being at the age immediately before puberty." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001187 +name: pupal +def: "A maturity quality inhering in a insect by virtue of the bearer's being in the chrysalis (cocoon) or post larval stage." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001188 +name: prepupal +def: "A maturity quality inhering in a bearer by virtue of the bearer's being in an inactive stage in the development of some insects, between the larval and the pupal stages." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001189 +name: adolescent +def: "A maturity quality inhering in a bearer by virtue of the bearer's being between the onset of puberty and maturity." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001190 +name: juvenile +def: "A maturity quality inhering in a bearer by virtue the bearer's being not fully grown or developed." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001191 +name: medial to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the middle relative to another entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001192 +name: hyperresponsive to +def: "A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "hyperresponsive" EXACT [] +synonym: "increased responsivity" EXACT [] +is_a: PATO:0000487 ! responsive to +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000487 ! responsive to +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001194 ! hyporesponsive to + +[Term] +id: PATO:0001193 +name: lateral to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the side relative to another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "lateral" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001194 +name: hyporesponsive to +def: "A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "decreased responsivity" EXACT [] +synonym: "hyporesponsive" EXACT [] +is_a: PATO:0000487 ! responsive to +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000487 ! responsive to +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001192 ! hyperresponsive to + +[Term] +id: PATO:0001195 +name: proximal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located more centrally than another entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001196 +name: ventral to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the abdomen of an organism relative to another entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "anterior_ to" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001197 +name: obsolete modified direction +is_obsolete: true + +[Term] +id: PATO:0001198 +name: obsolete unmodified direction +is_obsolete: true + +[Term] +id: PATO:0001199 +name: linear +def: "A shape quality inhering in a bearer by virtue of the bearer's being narrow, with the two opposite margins parallel." [ISBN:0881923214] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001200 +name: T-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter T." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0001890 ! tripartite + +[Term] +id: PATO:0001201 +name: Y-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter Y." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0001890 ! tripartite + +[Term] +id: PATO:0001204 +name: obsolete not enlarged +subset: mpath_slim +is_obsolete: true + +[Term] +id: PATO:0001205 +name: dentated +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having toothlike projections in the margin." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "dentate" EXACT [] +synonym: "toothed" EXACT [] +is_a: PATO:0001206 ! serrated + +[Term] +id: PATO:0001206 +name: serrated +def: "A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex." [ISBN:0881923214] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "serrate" EXACT [] +is_a: PATO:0001976 ! serration +relationship: is_opposite_of PATO:0001975 ! unserrated + +[Term] +id: PATO:0001207 +name: obsolete absolute compatability +is_obsolete: true + +[Term] +id: PATO:0001208 +name: odorless +def: "An odor quality inhering in a bearer by virtue of the bearer's lacking odour." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000058 ! odor +disjoint_from: PATO:0001331 ! odorous + +[Term] +id: PATO:0001209 +name: obsolete absolute function +is_obsolete: true + +[Term] +id: PATO:0001210 +name: obsolete plane_angle_quantity +is_obsolete: true + +[Term] +id: PATO:0001211 +name: obsolete solid_angle_quantity +is_obsolete: true + +[Term] +id: PATO:0001212 +name: obsolete length_unit +is_obsolete: true + +[Term] +id: PATO:0001213 +name: obsolete mass_unit +is_obsolete: true + +[Term] +id: PATO:0001214 +name: obsolete temparature_unit +is_obsolete: true + +[Term] +id: PATO:0001215 +name: obsolete time_unit +is_obsolete: true + +[Term] +id: PATO:0001216 +name: obsolete volume_unit +is_obsolete: true + +[Term] +id: PATO:0001217 +name: obsolete energy_unit +is_obsolete: true + +[Term] +id: PATO:0001218 +name: obsolete substance_unit +is_obsolete: true + +[Term] +id: PATO:0001219 +name: obsolete area_unit +is_obsolete: true + +[Term] +id: PATO:0001220 +name: obsolete angle_unit +is_obsolete: true + +[Term] +id: PATO:0001221 +name: obsolete plane_angle_unit +is_obsolete: true + +[Term] +id: PATO:0001222 +name: obsolete solid_angle_unit +is_obsolete: true + +[Term] +id: PATO:0001223 +name: obsolete quantitative value +is_obsolete: true + +[Term] +id: PATO:0001224 +name: obsolete real number +is_obsolete: true + +[Term] +id: PATO:0001225 +name: obsolete relational number +is_obsolete: true + +[Term] +id: PATO:0001227 +name: variant +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change." [Dictionary:http\://dictionary.reference.com/] +subset: relational_slim +subset: value_slim +synonym: "variable" EXACT [] +is_a: PATO:0001303 ! variability +relationship: is_opposite_of PATO:0000438 ! invariant + +[Term] +id: PATO:0001228 +name: obsolete dull +is_obsolete: true + +[Term] +id: PATO:0001229 +name: high saturation +def: "A color saturation which is of high purity." [PATOC:MAH] +subset: value_slim +synonym: "bright" EXACT [] +synonym: "vivid" RELATED [] +is_a: PATO:0000017 ! color saturation +relationship: is_opposite_of PATO:0000328 ! low saturation + +[Term] +id: PATO:0001230 +name: strength +def: "A quality inhering in a bearer by virtue of the bearer's power or force." [thefreedictionary.com:thefreedictionary.com] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001231 +name: obsolete cold insensitive +is_obsolete: true + +[Term] +id: PATO:0001232 +name: obsolete heat insentive +is_obsolete: true + +[Term] +id: PATO:0001233 +name: dorsal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the back or upper surface of an organism relative to another entity." [PATOC:nw] +subset: relational_slim +subset: value_slim +synonym: "dorsal" EXACT [] +synonym: "posterior_to (human torso)" EXACT [] +synonym: "superior_to (human head)" EXACT [] +is_a: PATO:0000140 ! position +relationship: is_opposite_of PATO:0001234 ! distal to + +[Term] +id: PATO:0001234 +name: distal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "distal" EXACT [] +is_a: PATO:0000140 ! position +relationship: is_opposite_of PATO:0001233 ! dorsal to + +[Term] +id: PATO:0001235 +name: obsolete strength value +is_obsolete: true + +[Term] +id: PATO:0001236 +name: process quality +alt_id: PATO:0001239 +alt_id: PATO:0001240 +def: "A quality which inheres in an process." [PATOC:GVG] +comment: See comments of relational quality of a physical entity. +synonym: "quality of a process" EXACT [] +synonym: "quality of occurrent" EXACT [] +synonym: "quality of process" EXACT [] +synonym: "relational quality of occurrent" EXACT [] +is_a: PATO:0000001 ! quality +disjoint_from: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001241 +name: physical object quality +alt_id: PATO:0001237 +alt_id: PATO:0001238 +def: "A quality which inheres in a continuant." [PATOC:GVG] +comment: Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles. +synonym: "monadic quality of a continuant" EXACT [] +synonym: "monadic quality of an object" NARROW [] +synonym: "monadic quality of continuant" NARROW [] +synonym: "multiply inhering quality of a physical entity" EXACT [] +synonym: "quality of a continuant" EXACT [] +synonym: "quality of a single physical entity" EXACT [] +synonym: "quality of an object" EXACT [] +synonym: "quality of continuant" EXACT [] +xref: snap:Quality +is_a: PATO:0000001 ! quality + +[Term] +id: PATO:0001242 +name: wavelength +def: "A physical quality which is equal to the distance between repeating units of a wave pattern." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001243 +name: light blue +def: "A color consisting of blue hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000318 ! blue + +[Term] +id: PATO:0001244 +name: dark blue +def: "A color consisting of blue hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000318 ! blue + +[Term] +id: PATO:0001245 +name: dark brown +def: "A color consisting of brown hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000952 ! brown + +[Term] +id: PATO:0001246 +name: light brown +def: "A color consisting of brown hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000952 ! brown + +[Term] +id: PATO:0001247 +name: light cyan +def: "A color consisting of cyan hue and high brightness." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000319 ! cyan + +[Term] +id: PATO:0001248 +name: dark cyan +def: "A color consisting of cyan hue and low brightness." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000319 ! cyan + +[Term] +id: PATO:0001249 +name: dark green +def: "A color consisting of green hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001250 +name: light green +def: "A color consisting of green hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001251 +name: dark grey +def: "A color consisting of grey color and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000950 ! grey + +[Term] +id: PATO:0001252 +name: light grey +def: "A color consisting of grey color and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000950 ! grey + +[Term] +id: PATO:0001253 +name: light magenta +def: "A color consisting of magenta color and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000321 ! magenta + +[Term] +id: PATO:0001254 +name: dark magenta +def: "A color consisting of magenta with low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000321 ! magenta + +[Term] +id: PATO:0001255 +name: light orange +def: "A color consisting of orange hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000953 ! orange + +[Term] +id: PATO:0001256 +name: dark orange +def: "A color consisting of orange color and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000953 ! orange + +[Term] +id: PATO:0001257 +name: light deep pink +def: "Pink color having high brightness and moderate saturation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000954 ! pink + +[Term] +id: PATO:0001258 +name: deep pink +def: "Pink color having medium brightness and moderate saturation." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000954 ! pink + +[Term] +id: PATO:0001259 +name: dark purple +def: "A color consisting of purple color and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000951 ! purple + +[Term] +id: PATO:0001260 +name: light purple +def: "A color consisting of purple color and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000951 ! purple + +[Term] +id: PATO:0001261 +name: dark red +def: "A color consisting of red hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000322 ! red + +[Term] +id: PATO:0001262 +name: light red +def: "A color consisting of red hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000322 ! red + +[Term] +id: PATO:0001263 +name: dark yellow +def: "A color consisting of yellow hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000324 ! yellow + +[Term] +id: PATO:0001264 +name: light yellow +def: "A color consisting of yellow hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "blond" RELATED [] +is_a: PATO:0000324 ! yellow + +[Term] +id: PATO:0001265 +name: saturated blue +def: "A color consisting of blue hue and high saturation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "bright blue" RELATED [] +is_a: PATO:0000318 ! blue + +[Term] +id: PATO:0001266 +name: desaturated blue +def: "A color consisting of blue hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale blue" EXACT [] +is_a: PATO:0000318 ! blue + +[Term] +id: PATO:0001267 +name: saturated brown +def: "A color consisting of brown hue and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright brown" RELATED [] +is_a: PATO:0000952 ! brown + +[Term] +id: PATO:0001268 +name: desaturated brown +def: "A color consisting of brown hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale brown" EXACT [] +is_a: PATO:0000952 ! brown + +[Term] +id: PATO:0001269 +name: saturated cyan +def: "A color consisting of cyan colour and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright cyan" RELATED [] +is_a: PATO:0000319 ! cyan + +[Term] +id: PATO:0001270 +name: desaturated cyan +def: "A color consisting of cyan colour and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale cyan" EXACT [] +is_a: PATO:0000319 ! cyan + +[Term] +id: PATO:0001271 +name: saturated green +def: "A color consisting of green hue and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright green" RELATED [] +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001272 +name: desaturated green +def: "A color consisting of green hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale green" EXACT [] +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001273 +name: obsolete bright grey +def: "A color consisting of grey color and high saturation." [PATOC:GVG] +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0001274 +name: obsolete pale grey +def: "A color consisting of grey color and low saturation." [PATOC:GVG] +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0001275 +name: saturated magenta +def: "A color consisting of magenta color and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright magenta" RELATED [] +is_a: PATO:0000321 ! magenta + +[Term] +id: PATO:0001276 +name: desaturated magenta +def: "A color consisting of magenta color and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale magenta" EXACT [] +is_a: PATO:0000321 ! magenta + +[Term] +id: PATO:0001277 +name: saturated orange +def: "A color consisting of orange hue and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright orange" RELATED [] +is_a: PATO:0000953 ! orange + +[Term] +id: PATO:0001278 +name: desaturated orange +def: "A color consisting of orange hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale orange" EXACT [] +is_a: PATO:0000953 ! orange + +[Term] +id: PATO:0001280 +name: dark pale pink +alt_id: PATO:0001279 +def: "Pink color having medium brightness and low saturation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "bright pink" RELATED [] +is_a: PATO:0000954 ! pink + +[Term] +id: PATO:0001281 +name: saturated purple +def: "A color consisting of purple color and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright purple" RELATED [] +is_a: PATO:0000951 ! purple + +[Term] +id: PATO:0001282 +name: desaturated purple +def: "A color consisting of purple color and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale purple" EXACT [] +is_a: PATO:0000951 ! purple + +[Term] +id: PATO:0001283 +name: saturated red +def: "A color consisting of red hue and high saturation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "bright red" RELATED [] +is_a: PATO:0000322 ! red + +[Term] +id: PATO:0001284 +name: desaturated red +def: "A color consisting of red hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale red" EXACT [] +is_a: PATO:0000322 ! red + +[Term] +id: PATO:0001285 +name: saturated yellow +def: "A color consisting of yellow hue and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright yellow" RELATED [] +is_a: PATO:0000324 ! yellow + +[Term] +id: PATO:0001286 +name: desaturated yellow +def: "A color consisting of yellow hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale yellow" EXACT [] +is_a: PATO:0000324 ! yellow + +[Term] +id: PATO:0001287 +name: red brown +def: "A color consisting of red and brown hue." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000952 ! brown + +[Term] +id: PATO:0001288 +name: dark red brown +def: "A color consisting of red and brown hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001287 ! red brown + +[Term] +id: PATO:0001289 +name: light red brown +def: "A color consisting of red and brown hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001287 ! red brown + +[Term] +id: PATO:0001290 +name: fluorescent +def: "A fluorescence quality inhering in a bearer by virtue of emitting light during exposure to radiation from an external source." [web:www.thefreedictionary.com/] +subset: value_slim +is_a: PATO:0000018 ! fluorescence + +[Term] +id: PATO:0001291 +name: electromagnetic (EM) radiation quality +def: "A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation." [Wikipedia:http\://en.wikipedia.org/wiki/Electromagnetic_radiation] +subset: attribute_slim +is_a: PATO:0001739 ! radiation quality + +[Term] +id: PATO:0001292 +name: full-spectrum EM radiation quality +def: "An EM radiation quality that is independent of the EM wavelength range." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001291 ! electromagnetic (EM) radiation quality + +[Term] +id: PATO:0001293 +name: absorption quality +def: "A scalar EM radiation quality which obtains by the capacity of the bearer to retain radiation." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001292 ! full-spectrum EM radiation quality + +[Term] +id: PATO:0001294 +name: radiation reflective quality +def: "A scalar EM radiation quality which obtains by the capacity of the bearer to scatter or reflect radiation." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001292 ! full-spectrum EM radiation quality + +[Term] +id: PATO:0001295 +name: albedo +def: "A reflective quality restricted to a particular wavelength." [PATOC:cjm] +comment: Typically used for light, but also applied to full EM spectrum. +subset: attribute_slim +is_a: PATO:0001294 ! radiation reflective quality + +[Term] +id: PATO:0001296 +name: luminous flux +def: "A scalar optical quality which obtains by the magnitude of the light emitted by the bearer." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0001297 +name: reflectivity +def: "A radiation reflective quality inhering in a bearer by virtue of the ratio of the energy of a wave reflected from its surface to the energy possessed by the wave striking the bearer's surface." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001294 ! radiation reflective quality + +[Term] +id: PATO:0001298 +name: phosphorescence +def: "A fluorescence in which the emittence continues after the absorption has ceased." [PATOC:GVG] +subset: relational_slim +is_a: PATO:0000018 ! fluorescence + +[Term] +id: PATO:0001299 +name: radiation emitting quality +def: "A scalar EM radiation quality which obtains by the capacity of the bearer to emit radiation." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001292 ! full-spectrum EM radiation quality + +[Term] +id: PATO:0001300 +name: optical quality +def: "An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001291 ! electromagnetic (EM) radiation quality + +[Term] +id: PATO:0001301 +name: chromatic property +def: "An optical quality that is the mixture, purity or pattern of wavelengths of light perceived by the observer." [PATOC:MAH] +subset: attribute_slim +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0001302 +name: vermilion +def: "A color consisting of red and orange hue with a slight amount of gray." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0001303 +name: variability +def: "A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing." [Dictionary:http\://dictionary.reference.com/] +subset: attribute_slim +synonym: "variability of a physical quality" RELATED [] +is_a: PATO:0000001 ! quality + +[Term] +id: PATO:0001304 +name: variability of temperature +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change." [PATO:GVG] +subset: attribute_slim +is_a: PATO:0001303 ! variability +intersection_of: PATO:0001303 ! variability +intersection_of: towards PATO:0000146 ! temperature +relationship: towards PATO:0000146 ! temperature + +[Term] +id: PATO:0001305 +name: increased temperature +alt_id: PATO:0000678 +def: "A temperature which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high temperature" EXACT [] +synonym: "hot" EXACT [] +is_a: PATO:0000146 ! temperature +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000146 ! temperature +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001306 ! decreased temperature + +[Term] +id: PATO:0001306 +name: decreased temperature +alt_id: PATO:0000677 +def: "A temperature which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "cold" EXACT [] +synonym: "low temperature" EXACT [] +is_a: PATO:0000146 ! temperature +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000146 ! temperature +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001305 ! increased temperature + +[Term] +id: PATO:0001307 +name: decreased variability of temperature +def: "A variability of temperature which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low variability of temperature" EXACT [] +is_a: PATO:0001314 ! variant temperature +is_a: PATO:0002301 ! decreased quality +intersection_of: PATO:0001314 ! variant temperature +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001308 ! increased variability of temperature + +[Term] +id: PATO:0001308 +name: increased variability of temperature +def: "A variability of temperature which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high variability of temperature" EXACT [] +is_a: PATO:0001314 ! variant temperature +is_a: PATO:0002300 ! increased quality +intersection_of: PATO:0001314 ! variant temperature +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001307 ! decreased variability of temperature + +[Term] +id: PATO:0001309 +name: duration +alt_id: PATO:0000081 +def: "A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point." [PATOC:mellybelly] +subset: attribute_slim +subset: hpo_slim +synonym: "period" EXACT [] +synonym: "time" RELATED [] +is_a: PATO:0002062 ! physical quality of a process + +[Term] +id: PATO:0001310 +name: duration of temperature +def: "A duration quality of a process inhering in a bearer by virtue of the bearer's duration of exhibition of thermal energy." [PATOC:GVG] +comment: TODO: obsolete? I don't know what this means. +subset: attribute_slim +is_a: PATO:0001309 ! duration + +[Term] +id: PATO:0001311 +name: decreased duration of temperature +def: "A duration of temperature which is lesser relative to the normal or average enduring or continuing in time." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000499 ! decreased duration +is_a: PATO:0001310 ! duration of temperature +intersection_of: PATO:0001310 ! duration of temperature +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001312 ! increased duration of temperature + +[Term] +id: PATO:0001312 +name: increased duration of temperature +def: "A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time." [PATOC:GVG] +subset: value_slim +synonym: "high duration of temperature" EXACT [] +is_a: PATO:0000498 ! increased duration +is_a: PATO:0001310 ! duration of temperature +intersection_of: PATO:0001310 ! duration of temperature +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001311 ! decreased duration of temperature + +[Term] +id: PATO:0001313 +name: invariant temperature +def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature." [PATO:GVG] +subset: relational_slim +is_a: PATO:0001304 ! variability of temperature +relationship: is_opposite_of PATO:0001314 ! variant temperature + +[Term] +id: PATO:0001314 +name: variant temperature +def: "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature." [PATO:GVG] +subset: value_slim +is_a: PATO:0001304 ! variability of temperature +relationship: is_opposite_of PATO:0001313 ! invariant temperature + +[Term] +id: PATO:0001315 +name: mild increased temperature +def: "A temperature which is increased by a low degree." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001305 ! increased temperature + +[Term] +id: PATO:0001316 +name: moderate increased temperature +def: "A temperature which is increased by a medium degree." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001305 ! increased temperature + +[Term] +id: PATO:0001317 +name: severe increased temperature +def: "A temperature which is increased by a high degree." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001305 ! increased temperature + +[Term] +id: PATO:0001318 +name: indiscriminate +def: "A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000189 ! discrimination +disjoint_from: PATO:0001319 ! discriminate +relationship: is_opposite_of PATO:0001319 ! discriminate + +[Term] +id: PATO:0001319 +name: discriminate +def: "A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000189 ! discrimination +relationship: is_opposite_of PATO:0001318 ! indiscriminate + +[Term] +id: PATO:0001320 +name: pubescent hair +def: "A pilosity quality of being covered with short hairs or soft down." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000454 ! hairy + +[Term] +id: PATO:0001321 +name: right angle to +def: "An angle which is 90 degrees to another entity." [thesaurus.math:thesaurus.math] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001322 +name: straight angle to +def: "An angle which is 180 degrees to another entity." [thesaurus.maths:thesaurus.maths] +comment: TODO: decide on correct parentage. +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001323 +name: area +def: "A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent." [Wikipedia:http\://en.wikipedia.org/wiki/Area] +subset: attribute_slim +subset: mpath_slim +subset: scalar_slim +is_a: PATO:0001709 ! 2-D extent + +[Term] +id: PATO:0001324 +name: bilateral symmetry +def: "A symmetry quality inhering in a bearer by virtue of the bearer's being symmetric about a plane running from its frontal end to its caudal end (head to tail), and has nearly identical right and left halves." [Wikipedia:http\://en.wikipedia.org/wiki/Bilateral_symmetry] +subset: cell_quality +subset: value_slim +synonym: "left-right symmetry" EXACT [] +synonym: "pennate" RELATED [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0002-2908-3327] +is_a: PATO:0000965 ! symmetry + +[Term] +id: PATO:0001325 +name: radial symmetry +def: "A symmetry quality inhering in a bearer by virtue of the bearer's having equal proportion around a central point or axis." [PATOC:GVG] +subset: attribute_slim +subset: cell_quality +synonym: "centric" EXACT [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0002-2908-3327] +is_a: PATO:0000965 ! symmetry + +[Term] +id: PATO:0001326 +name: obsolete left-right symmetry +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0001327 +name: zygomorphic +def: "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by only one longitudinal plane passing through the axis." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0001324 ! bilateral symmetry + +[Term] +id: PATO:0001328 +name: actinomorphic +def: "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by any longitudinal plane passing through the axis." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0001325 ! radial symmetry + +[Term] +id: PATO:0001329 +name: flavourful +def: "A flavor quality inhering in a bearer by virtue of the bearer's having flavour." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0000043 ! flavor +disjoint_from: PATO:0001330 ! flavourless + +[Term] +id: PATO:0001330 +name: flavourless +def: "A flavor quality inhering in a bearer by virtue of the bearer's lacking flavour." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0000043 ! flavor + +[Term] +id: PATO:0001331 +name: odorous +def: "An odor quality inhering in a bearer by virtue of the bearer's having odour." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000058 ! odor + +[Term] +id: PATO:0001332 +name: amorphous +def: "A morphology quality inhering in a bearer by virtue of the bearer's lack of distinct morphology." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0001333 +name: temporally extended +def: "A quality of a process which ends later than the natural end time." [PATOC:melissa] +subset: value_slim +is_a: PATO:0002304 ! increased process quality +is_a: PATO:0002324 ! offset quality + +[Term] +id: PATO:0001334 +name: diameter +def: "A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary." [Wikipedia:http\://en.wikipedia.org/wiki/Diameter] +subset: attribute_slim +subset: mpath_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0001335 +name: bacterial mating type +def: "A mating type that indicates whether the F plasmid has integrated into the chromosome." [MGED:MGED] +subset: attribute_slim +is_a: PATO:0001895 ! mating type + +[Term] +id: PATO:0001336 +name: obsolete unknown sex +def: "A biological sex quality inhering in an individual whose sex is unknown." [MGED:MGED] +comment: Unknown is not a type of sex. +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0001337 +name: yeast mating type +def: "A yeast mating type." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001895 ! mating type + +[Term] +id: PATO:0001338 +name: mixed sex +def: "A biological sex quality inhering in a population of multiple sexes." [MGED:MGED] +comment: For example a mixture of females and male or males and hermaphrodites. +subset: value_slim +is_a: PATO:0002003 ! population quality + +[Term] +id: PATO:0001339 +name: biomaterial purity +def: "A composition quality inhering in an bearer by virtue of the bearer's homogeneity of a biomaterial." [MGED:MGED] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001340 +name: hermaphrodite +def: "A biological sex quality inhering in an organism or a population with both male and female sexual organs in one individual." [MGED:MGED] +subset: value_slim +synonym: "intersex" EXACT [] +is_a: PATO:0001894 ! phenotypic sex + +[Term] +id: PATO:0001341 +name: a mating type (yeast) +def: "A S. cerevisiae mating type cells that secrete a pheromone that in alpha haploids stimulates processes that lead to mating." [MGED:MGED] +subset: value_slim +synonym: "a" BROAD [] +is_a: PATO:0001342 ! Saccharomyces cerevisiae mating type + +[Term] +id: PATO:0001342 +name: Saccharomyces cerevisiae mating type +def: "A S. cerevisiae mating type." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001337 ! yeast mating type + +[Term] +id: PATO:0001343 +name: Schizosaccharomyces pombe mating type +def: "A S. pombe mating type determined by the gene configuration on the mat1 locus." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001337 ! yeast mating type + +[Term] +id: PATO:0001344 +name: alpha mating type (yeast) +def: "A S. cerevisiae mating type cells that secrete a pheromone that stimulates a haploids." [MGED:MGED] +subset: value_slim +synonym: "alpha" BROAD [] +is_a: PATO:0001342 ! Saccharomyces cerevisiae mating type + +[Term] +id: PATO:0001345 +name: h minus +def: "A S. pombe mating type determined by the mat1-Mc and mat1-Mi on the mat1 locus." [PATOC:GVG] +subset: value_slim +synonym: "h -" EXACT [] +synonym: "M" EXACT [] +is_a: PATO:0001343 ! Schizosaccharomyces pombe mating type + +[Term] +id: PATO:0001346 +name: h plus +def: "A S. pombe mating type determined by the mat1-Pc and mat1-Pi on the mat1 locus." [PATOC:GVG] +subset: value_slim +synonym: "h+" EXACT [] +synonym: "P" EXACT [] +is_a: PATO:0001343 ! Schizosaccharomyces pombe mating type + +[Term] +id: PATO:0001347 +name: F mating type +def: "A bacterial mating type indicating the presence of F plasmid in a bacterial cell." [MGED:MGED] +subset: value_slim +is_a: PATO:0001335 ! bacterial mating type + +[Term] +id: PATO:0001348 +name: F minus mating type +def: "A bacterial mating type indicating the absence of F plasmid in a bacterial cell." [MGED:MGED] +subset: value_slim +synonym: "F-" EXACT [] +is_a: PATO:0001335 ! bacterial mating type + +[Term] +id: PATO:0001349 +name: high frequency recombinant +def: "A mating type that indicates that the F plasmid has integrated into the chromosome." [MGED:MGED] +subset: value_slim +synonym: "Hfr" EXACT [] +is_a: PATO:0001348 ! F minus mating type + +[Term] +id: PATO:0001350 +name: angular acceleration +def: "A physical quality inhering in a bearer by virtue of the rate of change of the bearer's angular velocity." [Wikipedia:http\://en.wikipedia.org/wiki/Angular_acceleration] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001028 ! acceleration + +[Term] +id: PATO:0001351 +name: area density +def: "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given area." [Wikipedia:http\://en.wikipedia.org/wiki/Area_density] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001019 ! mass density + +[Term] +id: PATO:0001352 +name: linear density +def: "A density quality which is equal to the mass exerting an influence on a one-dimensional object." [Wikipedia:http\://en.wikipedia.org/wiki/Linear_density] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001019 ! mass density + +[Term] +id: PATO:0001353 +name: volumetric density +def: "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given volume." [Wikipedia:http\://en.wikipedia.org/wiki/Mass_density] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001019 ! mass density + +[Term] +id: PATO:0001354 +name: translucent +def: "A optical quality inhering in a bearer by virtue of the bearer's exhibiting low opacity." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000957 ! opacity + +[Term] +id: PATO:0001355 +name: convex +def: "A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0002005 ! concavity +relationship: is_opposite_of PATO:0001857 ! concave + +[Term] +id: PATO:0001356 +name: pleomorphic +def: "A shape quality inhering in a cell by virtue of the bearer's ability to take on two or more different shapes during its life cycle." [PATOC:GVG] +subset: cell_quality +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001357 +name: pulvinate +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped like a cushion or has a marked convex cushion-like form." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape + +[Term] +id: PATO:0001358 +name: umbonate +def: "A quality inhering in a bearer by virtue of the bearer's having a knob or knoblike protuberance." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0001359 +name: rugose +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having many wrinkles or creases on the surface." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001925 ! surface feature shape + +[Term] +id: PATO:0001360 +name: filamentous +def: "A shape quality inhering in a bearer by virtue of the bearer's having thin filamentous extensions at its edge." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001361 +name: warty +def: "A texture quality inhering in a bearer by virtue of the bearer's being covered with warts or projections that resemble warts resulting in a hard rough surface." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000700 ! rough + +[Term] +id: PATO:0001362 +name: fragile +def: "A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed." [WordNet:WordNet] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001662 ! fragility +disjoint_from: PATO:0001716 ! non-fragile +relationship: is_opposite_of PATO:0001716 ! non-fragile + +[Term] +id: PATO:0001364 +name: rhizoidal +def: "A quality inhering in a bearer by virtue of the bearer's having root like extensions radiating from its center." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0001365 +name: spiny +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having spines, thorns or similar thin projections on its surface." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0001925 ! surface feature shape + +[Term] +id: PATO:0001366 +name: punctiform +def: "A shape quality inhering in a bearer by virtue of the bearer's being small and resembling a point." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001367 +name: lobate +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001925 ! surface feature shape + +[Term] +id: PATO:0001368 +name: erose +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having an irregularly toothed edge." [PATOC:GVG] +subset: cell_quality +subset: value_slim +synonym: "jagged" RELATED [] +is_a: PATO:0001976 ! serration + +[Term] +id: PATO:0001369 +name: raised +def: "A shape quality inhering in a colony by virtue of the bearer's appearing above the medium surface with terraced edges." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001370 +name: viscid +def: "A coating quality which is sticky or clammy." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002012 ! coating + +[Term] +id: PATO:0001371 +name: mucoid +def: "A composition quality inhering in an bearer by virtue of the bearer's consistency of mucus." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "mucinous" RELATED [] +synonym: "mucous" RELATED [] +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001372 +name: refractivity +def: "A physical quality that inheres in propagating wave (light or sound) virtue of the bearer's change in direction when passing from one medium to another." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001294 ! radiation reflective quality + +[Term] +id: PATO:0001373 +name: glistening +def: "A reflectivity quality inhering in a bearer by virtue of the bearer's reflecting lots of light." [PATOC:GVG] +subset: value_slim +synonym: "glossy" EXACT [] +synonym: "shiny" EXACT [] +is_a: PATO:0001297 ! reflectivity + +[Term] +id: PATO:0001374 +name: ploidy +def: "A cellular quality inhering in a bearer by virtue of the bearer's number of homologous sets of chromosomes in the nucleus or primary chromosome-containing compartment of the cell, each set essentially coding for all the biological traits of the organism." [Wikipedia:http\://en.wikipedia.org/wiki/Ploidy] +subset: attribute_slim +is_a: PATO:0001396 ! cellular quality + +[Term] +id: PATO:0001375 +name: haploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of homologous chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Haploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001393 ! euploid + +[Term] +id: PATO:0001376 +name: monoploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of unique homologous chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Monoploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001393 ! euploid + +[Term] +id: PATO:0001377 +name: polyploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's containing more than two homologous sets of chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Polyploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001393 ! euploid + +[Term] +id: PATO:0001378 +name: autopolyploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from a single species." [Wikipedia:http\://en.wikipedia.org/wiki/Autopolyploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001379 +name: allopolyploidy +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from different species." [Wikipedia:http\://en.wikipedia.org/wiki/Allopolyploidy] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001380 +name: paleopolyploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's having an ancient polyploid ancestor." [Wikipedia:http\://en.wikipedia.org/wiki/Paleopolyploid] +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001381 +name: triploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing three homologous sets of chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Triploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001382 +name: tetraploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Tetraploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001383 +name: pentaploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing five homologous sets of chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Pentaploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001384 +name: hexaploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Hexaploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001385 +name: aneuploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's containing a non-integral multiple of the monoploid number, due to extra or missing chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Aneuploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001374 ! ploidy + +[Term] +id: PATO:0001386 +name: monosomy +def: "An aneuploidy quality inhering in a bearer by virtue of the bearer's containing only one chromosome from a pair in a cell's nucleus." [Wikipedia:http\://en.wikipedia.org/wiki/Monosomy] +subset: cell_quality +subset: value_slim +is_a: PATO:0001385 ! aneuploid + +[Term] +id: PATO:0001387 +name: disomy +def: "An aneuploidy quality inhering in a bearer by virtue of the bearer's containing only two chromosome from a pair in a cell's nucleus." [Wikipedia:http\://en.wikipedia.org/wiki/Disomy] +comment: For diploid organisms, such as humans, it is the normal condition, whilst for organisms that are normally triploid or above, disomy is an aneuploidy. +subset: cell_quality +subset: value_slim +is_a: PATO:0001385 ! aneuploid + +[Term] +id: PATO:0001388 +name: uniparental disomy +def: "A disomy quality inhering in a bearer by virtue of the bearer's containing two copies of the chromosome from one of the parents (with no contribution from the other parent)." [Wikipedia:http\://en.wikipedia.org/wiki/Uniparental_disomy] +subset: cell_quality +subset: value_slim +is_a: PATO:0001387 ! disomy + +[Term] +id: PATO:0001389 +name: trisomy +def: "An aneuploidy quality inhering in a bearer by virtue of the bearer's containing three, instead of two, chromosomes of a particular numbered type in an organism." [Wikipedia:http\://en.wikipedia.org/wiki/Trisomy] +subset: cell_quality +subset: value_slim +is_a: PATO:0001385 ! aneuploid + +[Term] +id: PATO:0001390 +name: partial trisomy +def: "A trisomy quality inhering in a bearer when part of the bearer's extra chromosome is attached to one of the other chromosomes, or if one of the bearer's chromosomes has two copies of part of its chromosome." [Wikipedia:http\://en.wikipedia.org/wiki/Partial_trisomy] +subset: value_slim +is_a: PATO:0001389 ! trisomy + +[Term] +id: PATO:0001391 +name: mosaic trisomy +def: "A trisomy quality inhering in a bearer by virtue of the bearer's having extra chromosomal material in only some of it's cells." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0001389 ! trisomy + +[Term] +id: PATO:0001392 +name: endopolyploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's chromosome number being increased by endomitosis and for which the degree of ploidy is proportional to the number of times that endomitosis has taken place." [Wikipedia:http\://en.wikipedia.org/wiki/Endopolyploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001393 +name: euploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's containing an integral multiple of the monoploid number, possibly excluding the sex-determining chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Euploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001374 ! ploidy + +[Term] +id: PATO:0001394 +name: diploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's having two copies (homologs) of each chromosome, usually one from the mother and one from the father." [Wikipedia:http\://en.wikipedia.org/wiki/Diploid] +comment: The exact number may be one or two different from the 2n number and still be classified as diploidy (although with aneuploidy). Nearly all mammals are diploid organisms, although all individuals have some small fracton of cells that are polyploidy. +subset: cell_quality +subset: value_slim +is_a: PATO:0001393 ! euploid + +[Term] +id: PATO:0001395 +name: haplodiploid +def: "A diploidy quality inhering in a bearer in by virtue of belonging in a species whose one of the sexes has haploid cells and the other has diploid cells." [Wikipedia:http\://en.wikipedia.org/wiki/Haplodiploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001394 ! diploid + +[Term] +id: PATO:0001396 +name: cellular quality +def: "A monadic quality of continuant that exists at the cellular level of organisation." [PATOC:GVG] +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001397 +name: cellular potency +def: "A cellular quality that arises by virtue of whether the bearer's disposition to differentiate into one or more mature cell types." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001396 ! cellular quality + +[Term] +id: PATO:0001398 +name: self-renewal +def: "A cellular quality inhering in a bearer by virtue of the bearer's having the ability to go through numerous cycles of cell division while maintaining the undifferentiated state." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0002102 ! proliferative + +[Term] +id: PATO:0001399 +name: totipotent +def: "A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers and extraembryonic cell types." [Wikipedia:http\://en.wikipedia.org/wiki/Totipotent] +subset: cell_quality +subset: disposition_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency + +[Term] +id: PATO:0001400 +name: unipotent +def: "A cellular potency that is the capacity to produce only one differentiated cell type." [Wikipedia:http\://en.wikipedia.org/wiki/Unipotent] +comment: Unipotent cells have the quality of self-renewal which distinguishes them from non-stem cells. +subset: cell_quality +subset: disposition_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency + +[Term] +id: PATO:0001401 +name: oligopotent +def: "A cellular potency that is the capacity to form multiple differentiated cell types of a specific lineage and lack self renewing capacity." [PATOC:MAH] +comment: Less potent than multipotent, often thought of as precursor or progenitor cell status. +subset: cell_quality +subset: disposition_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency + +[Term] +id: PATO:0001402 +name: multipotent +def: "A cellular potency that is the capacity to form multiple differentiated cell types." [Wikipedia:http\://en.wikipedia.org/wiki/Multipotent] +subset: cell_quality +subset: disposition_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency + +[Term] +id: PATO:0001403 +name: pluripotent +def: "A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers but not extraembryonic cell types." [Wikipedia:http\://en.wikipedia.org/wiki/Pluripotent] +subset: cell_quality +subset: disposition_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency + +[Term] +id: PATO:0001404 +name: nucleate quality +def: "A cellular quality inhering in a bearer by virtue of bearer's number of nuclei." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001396 ! cellular quality + +[Term] +id: PATO:0001405 +name: anucleate +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having no nucleus." [Biology-online:Biology-online] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001404 ! nucleate quality + +[Term] +id: PATO:0001406 +name: binucleate +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei." [Biology-online:Biology-online] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001908 ! multinucleate + +[Term] +id: PATO:0001407 +name: mononucleate +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus." [Biology-online:Biology-online] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0002505 ! nucleated + +[Term] +id: PATO:0001408 +name: ciliatedness +def: "A cellular quality inhering in a bearer by virtue of the bearer's having thin, tail-like projections extending outwards from the cell body." [Wikipedia:http\://en.wikipedia.org/wiki/Ciliated] +subset: cell_quality +subset: value_slim +is_a: PATO:0001396 ! cellular quality + +[Term] +id: PATO:0001409 +name: spindle-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's resembling a long tapered rod." [Biology-online:Biology-online] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape + +[Term] +id: PATO:0001410 +name: striated +def: "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel." [Biology-online:Biology-online] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001411 +name: structured +def: "A structural quality inhering in a bearer by virtue of the bearer's having distinct structure." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0001412 ! unstructured + +[Term] +id: PATO:0001412 +name: unstructured +def: "A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0001411 ! structured + +[Term] +id: PATO:0001413 +name: angular velocity +def: "A physical quality inhering in a bearer by virtue of the rate of the bearer's angular movement about an axis; the angle rotated in a given time." [Wikipedia:http\://en.wikipedia.org/wiki/Angular_velocity] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002242 ! velocity + +[Term] +id: PATO:0001414 +name: catalytic activity +def: "A physical quality inhering in a catalyst by virtue of the amount of the catalyst's action." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001415 +name: morbidity +def: "A quality inhering in a population by virtue of the proportion of its members that are ill at a given time." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002003 ! population quality + +[Term] +id: PATO:0001416 +name: regular duration +def: "A duration which has regular start and/or end times." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001309 ! duration +relationship: is_opposite_of PATO:0001417 ! irregular duration + +[Term] +id: PATO:0001417 +name: irregular duration +def: "A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times." [PATOC:melissa] +subset: value_slim +is_a: PATO:0001309 ! duration +relationship: is_opposite_of PATO:0001416 ! regular duration + +[Term] +id: PATO:0001418 +name: lethargic +def: "A behavioral quality inhering in a bearer by virtue of the bearer's being deficient in alertness or activity." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0002265 ! behavioural activity + +[Term] +id: PATO:0001419 +name: sharp +def: "A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0000944 ! sharpness + +[Term] +id: PATO:0001420 +name: buoyancy +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to rise or float in a fluid medium such as water or air." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001421 +name: alive +def: "A viability quality inhering in a bearer by virtue of the bearer's condition before death." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001422 +name: dead +def: "A viability quality inhering in a bearer by virtue of the cessation of the bearer's life." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001423 +name: refractile +def: "A reflectivity quality inhering in the bearer by virtue of the bearer's ability to refract light." [biology-online:biology-online] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001372 ! refractivity + +[Term] +id: PATO:0001424 +name: violet +def: "A color hue with very low wavelength of that portion of the visible spectrum lying between reddish blue or bluish purple, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 380 nanometers." [Wikipedia:http\://en.wikipedia.org/wiki/Violet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0001425 +name: rosy +def: "A color hue consisting of red hue and yellow hue and high brightness." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0001426 +name: maroon +def: "A color consisting of purple and brown hue." [Wikipedia:http\://en.wikipedia.org/wiki/Maroon] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0001427 +name: compound acidity +def: "A concentration quality inhering in compound by virtue of the bearer's tendency to act as a hydron donor." [chemicool:chemicool] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001842 ! acidity + +[Term] +id: PATO:0001428 +name: medium acidity +def: "A concentration quality inhering in a medium by virtue of the bearer's tendency to hydronate a specific reference base." [chemicool:chemicool] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001842 ! acidity + +[Term] +id: PATO:0001429 +name: acidic +def: "An medium acidity quality inhering in a solution by virtue of the bearer's a high concentration of H+ ions." [chemicool:chemicool] +subset: value_slim +is_a: PATO:0001428 ! medium acidity + +[Term] +id: PATO:0001430 +name: alkaline +def: "An medium acidity quality inhering in a solution by virtue of the bearer's a low concentration of H+ ions." [chemicool:chemicool] +subset: value_slim +is_a: PATO:0001428 ! medium acidity + +[Term] +id: PATO:0001431 +name: adhesivity +def: "An emergent molecular quality that arises by virtue of the bearer's disposition to exhibit molecular attraction to another entity in contact." [PATOC:GVG] +comment: The definition is general enough to cover adhesion arising from different kinds of chemical bonding/forces, although for PATO this term will most commonly used for cellular adhesion. See also GO:0031589 "cell-substrate adhesion". +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "adhesiveness" EXACT [] +synonym: "stickiness" RELATED [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001432 +name: decayed +def: "A quality inhering in a bearer by virtue of the bearer's decomposition into component parts." [Medical-dictionary:Medical-dictionary] +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001433 +name: growth quality of occurrent +alt_id: PATO:0001489 +def: "A quality of a single process which describes the growth of an organism, structure, or group of organisms." [PATOC:MAH] +subset: attribute_slim +synonym: "growth quality of a process" RELATED [] +synonym: "growth timing quality" RELATED [] +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001434 +name: reproductive quality +def: "An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring." [WordNet:WordNet] +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0001435 +name: attachment quality +def: "A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001436 +name: sessile (sensu botany) +def: "An attachment quality inhering in a flower by virtue of the bearer's lacking a stalk, as in flowers or leaves that grow directly from the stem." [Wikipedia:http\://en.wikipedia.org/wiki/Sessility_(botany)] +subset: relational_slim +subset: value_slim +is_a: PATO:0001435 ! attachment quality + +[Term] +id: PATO:0001437 +name: sessile (sensu zoology) +def: "A attachment quality inhering in a bearer by virtue of the bearer's inability to move about." [Wikipedia:http\://en.wikipedia.org/wiki/Sessile_(zoology)] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001435 ! attachment quality + +[Term] +id: PATO:0001438 +name: pedicellate +def: "A attachment quality inhering in a bearer by virtue of the bearer's having or being supported by a pedicel or pedicle." [MedTerms:MedTerms] +subset: relational_slim +subset: value_slim +is_a: PATO:0001435 ! attachment quality + +[Term] +id: PATO:0001439 +name: tonicity +alt_id: PATO:0001498 +def: "A contractile quality inhering in a bearer by virtue of the bearer's elastic tension that facilitate response to stimuli." [WordNet:WordNet] +comment: TODO: we need a clearer differentium between this and contractility - or merge? +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +synonym: "tone" EXACT [] +is_a: PATO:0001579 ! contractility + +[Term] +id: PATO:0001440 +name: homophilic +def: "A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an identical molecule in an adjacent cell." [GO:GO] +subset: relational_slim +subset: value_slim +is_a: PATO:0001531 ! cellular adhesivity +disjoint_from: PATO:0001441 ! heterophilic + +[Term] +id: PATO:0001441 +name: heterophilic +def: "A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an nonidentical molecule in an adjacent cell." [GO:GO] +subset: relational_slim +subset: value_slim +is_a: PATO:0001531 ! cellular adhesivity + +[Term] +id: PATO:0001442 +name: wholeness +def: "A structural quality inhering in a bearer by virtue of whether the bearer includes all its components." [thefreedictionary.com:thefreedictionary.com] +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001444 +name: broken +alt_id: PATO:0001443 +alt_id: PATO:0001820 +def: "A broken quality inhering in a bearer by virtue of the bearer's being broken open." [PATOC:GVG] +subset: value_slim +synonym: "burst" EXACT [] +synonym: "cracked" RELATED [] +synonym: "fractured" EXACT [] +synonym: "fragmented" EXACT [] +synonym: "hemorrhaged" RELATED [] +synonym: "ruptured" EXACT [] +synonym: "split" RELATED [] +synonym: "torn" RELATED [] +is_a: PATO:0001442 ! wholeness +disjoint_from: PATO:0001446 ! whole + +[Term] +id: PATO:0001445 +name: disassembled +def: "A wholeness quality inhering in a bearer by virtue of the bearer's being taken apart into its constituent parts." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0001444 ! broken + +[Term] +id: PATO:0001446 +name: whole +def: "A wholeness quality inhering in a bearer by virtue of the bearer's including all its components." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0001442 ! wholeness + +[Term] +id: PATO:0001447 +name: calcified +def: "A composition quality inhering in an bearer by virtue of the bearer's being encrusted or impregnated with calcium carbonate (CHEBI:3311)." [thefreedictionary.com:thefreedictionary.com] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "calcareous" EXACT [] +synonym: "calcification" NARROW [] +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001448 +name: ossified +def: "A composition quality inhering in an bearer by virtue of the bearer's being hardened by the deposition of calcium into bone." [MAMMALOGY:MAMMALOGY] +subset: value_slim +is_a: PATO:0001447 ! calcified + +[Term] +id: PATO:0001449 +name: cartilaginous +def: "A composition quality inhering in an bearer by virtue of the bearer's cartilage quantities." [Wikipedia:http\://en.wikipedia.org/wiki/Cartilaginous] +comment: Cartilage is a type of dense connective tissue. It is composed of specialized cells called chondrocytes (CL:0000138) that produce a large amount of extracellular matrix composed of collagen fibers, abundant ground substance rich in proteoglycan, and elastin fibers. +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001450 +name: edematous +def: "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of extracellular fluid." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +synonym: "edema" NARROW [] +synonym: "edemic" EXACT [] +synonym: "oedema" NARROW [] +synonym: "oedematous" EXACT [] +synonym: "oedemic" EXACT [] +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001451 +name: obsolete edematous (sensu botany) +def: "An extended swelling in plant organs caused primarily by an excessive accumulation of water." [thefreedictionary.com:thefreedictionary.com] +synonym: "edemic" RELATED [] +synonym: "oedematous" RELATED [] +synonym: "oedemic" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0001453 +name: detached from +def: "An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "detached" EXACT [] +is_a: PATO:0001435 ! attachment quality + +[Term] +id: PATO:0001454 +name: sensitivity to oxygen +def: "A sensitivity quality inhering in a bearer by virtue of the bearer's dependence on oxygen." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000085 ! sensitivity toward + +[Term] +id: PATO:0001455 +name: aerobic +def: "A quality inhering in a bearer by virtue of the bearer's dependence on oxygen." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001454 ! sensitivity to oxygen +disjoint_from: PATO:0001456 ! anaerobic +relationship: is_opposite_of PATO:0001456 ! anaerobic + +[Term] +id: PATO:0001456 +name: anaerobic +def: "A quality inhering in a bearer by virtue of the bearer's independence on oxygen." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001454 ! sensitivity to oxygen +relationship: is_opposite_of PATO:0001455 ! aerobic + +[Term] +id: PATO:0001457 +name: sensitivity of a process +def: "A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "sensitivity of occurrent" EXACT [] +is_a: PATO:0002062 ! physical quality of a process + +[Term] +id: PATO:0001458 +name: sensitivity of a process to oxygen +def: "A sensitivity of a process quality inhering in a bearer by virtue of the bearer's unfolding in a location with or without oxygen." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +synonym: "sensitivity of occurrent to oxygen" EXACT [] +is_a: PATO:0001457 ! sensitivity of a process + +[Term] +id: PATO:0001459 +name: aerobic (for occurrence) +def: "A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001458 ! sensitivity of a process to oxygen +relationship: is_opposite_of PATO:0001460 ! anaerobic (for occurrence) + +[Term] +id: PATO:0001460 +name: anaerobic (for occurrence) +def: "A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001458 ! sensitivity of a process to oxygen +relationship: is_opposite_of PATO:0001459 ! aerobic (for occurrence) + +[Term] +id: PATO:0001461 +name: surface tension +def: "A physical quality inhering in a liquid by virtue of the bearer's ability to attraction of molecules at its surface as a result of unbalanced molecular cohesive forces." [Wikipedia:http\://en.wikipedia.org/wiki/Surface_tension] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001462 +name: membrane potential +def: "A quality inhering in a cell's plasma membrane by virtue of the electrical potential difference across it." [Wikipedia:http\://en.wikipedia.org/wiki/Membrane_potential] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001464 ! electric potential + +[Term] +id: PATO:0001463 +name: action potential +def: "A quality inhering in a cell's plasma membrane by virtue of a brief fluctuation in the bearer's potential caused by the rapid opening and closing of voltage-gated ion channels." [Wikipedia:http\://en.wikipedia.org/wiki/Action_potential] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001464 ! electric potential + +[Term] +id: PATO:0001464 +name: electric potential +def: "A quality that is equal to the potential energy per unit charge associated with a static (time-invariant) electric field, also called the electrostatic potential." [Wikipedia:http\://en.wikipedia.org/wiki/Electric_potential] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001465 +name: monstrous +def: "A malformed quality inhering in a bearer by virtue of the bearer's all-encompassing, grotesque morphological defects." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000646 ! malformed + +[Term] +id: PATO:0001466 +name: curved rostral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the front of an organism." [PATOC:GVG] +subset: value_slim +synonym: "curved anterior" EXACT [] +synonym: "curved superior (human torso)" EXACT [] +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001467 +name: curved caudal +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the part of the body from which the tail arises." [PATOC:GVG] +subset: value_slim +synonym: "curved inferior (human torso)" EXACT [] +synonym: "curved posterior" EXACT [] +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001468 +name: curved dorsal +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the back or upper surface of an organism." [PATOC:GVG] +subset: value_slim +synonym: "curved posterior (human torso)" EXACT [] +synonym: "curved superior (human head)" EXACT [] +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001469 +name: curved ventral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the abdomen of an organism." [PATOC:GVG] +subset: value_slim +synonym: "curved anterior (human torso)" EXACT [] +synonym: "curved inferior (human head)" EXACT [] +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001470 +name: proportionality to +def: "A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity." [PATOC:nw] +comment: Examples: height to weight; brain size to body size. These could all be children of proportionality. Proportions can be measured as ratios. Some measures may be dimensionless. Not all ratios measure proportionality, eg m/s measures velocity which is not a proportion in the sense defined above, it is a quality in its own right. +subset: attribute_slim +subset: relational_slim +synonym: "proportion" EXACT [] +synonym: "proportionality" EXACT [] +synonym: "quotient" EXACT [] +synonym: "rate" RELATED [] +synonym: "ratio" EXACT [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001472 +name: decreased depth +alt_id: PATO:0001692 +def: "A depth which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low depth" EXACT [] +synonym: "shallow" EXACT [] +is_a: PATO:0000587 ! decreased size +is_a: PATO:0001595 ! depth +intersection_of: PATO:0001595 ! depth +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001596 ! increased depth + +[Term] +id: PATO:0001473 +name: duplicated +def: "A quality inhering in a bearer by virtue of the bearer's being present in two copies." [Dictionary.com:Dictionary.com] +subset: mpath_slim +subset: value_slim +synonym: "doubled" EXACT [] +is_a: PATO:0000470 ! increased amount + +[Term] +id: PATO:0001474 +name: anteverted +def: "An oriented quality inhering in a bearer by virtue of the bearer's axis being positioned forward." [bdid:bdid] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000614 ! oriented + +[Term] +id: PATO:0001475 +name: increased position +def: "A position which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high position" RELATED [] +is_a: PATO:0000140 ! position +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000140 ! position +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001476 ! decreased position + +[Term] +id: PATO:0001476 +name: decreased position +def: "A positional which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low position" RELATED [] +is_a: PATO:0000140 ! position +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000140 ! position +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001475 ! increased position + +[Term] +id: PATO:0001477 +name: retracted +def: "A positional quality inhering in a bearer by virtue of the bearer's being drawn in or pulled back from any given point." [Dictionary.com:Dictionary.com] +subset: value_slim +synonym: "moved" BROAD [] +synonym: "retruded" RELATED [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001478 +name: collapsed +def: "A structural quality inhering in a bearer by virtue of the bearer's being broken down; caved in." [Dictionary.com:Dictionary.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001480 +name: spongy +def: "A structural quality inhering in a bearer by virtue of the bearer's resembling a sponge in elasticity, absorbency, or porousness." [Answers.com:Answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +relationship: has_part PATO:0000982 ! permeable + +[Term] +id: PATO:0001481 +name: sloped +def: "A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001482 +name: prominent +def: "A quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line." [Dictionary.com:Dictionary.com] +subset: value_slim +is_a: PATO:0001598 ! protruding +is_a: PATO:0015007 ! prominence + +[Term] +id: PATO:0001483 +name: aplastic +def: "Absence of an organ, tissue or cell due to failure to develop from a primordium or precursor cell." [PATOC:GVG, PATOC:PortlandMeetingFeb2015] +comment: With aplasia, the primordium or precursor develops, but does not proceed in its development to a mature structure +subset: mpath_slim +subset: value_slim +synonym: "aplasia" EXACT [] +synonym: "undeveloped" EXACT [] +is_a: PATO:0002290 ! aplastic/hypoplastic +is_a: PATO:0002291 ! agenesis +intersection_of: PATO:0002290 ! aplastic/hypoplastic +intersection_of: PATO:0002291 ! agenesis + +[Term] +id: PATO:0001484 +name: recent +def: "A quality of a process which occurs near to or not long before the present." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0002325 ! onset quality + +[Term] +id: PATO:0001485 +name: condensed +alt_id: PATO:0001840 +def: "A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "compact" BROAD [] +synonym: "compressed" EXACT [] +synonym: "dense" RELATED [] +synonym: "squashed" EXACT [] +is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0002452 ! decondensed + +[Term] +id: PATO:0001486 +name: chronological age +def: "An age quality that exists by virtue of the time (years and months) that the bearer has existed." [WordNet:Wordnet] +subset: attribute_slim +is_a: PATO:0000011 ! age + +[Term] +id: PATO:0001487 +name: senescent +def: "A time quality inhering in a bearer by virtue of the bearer's growing old; aging." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000011 ! age + +[Term] +id: PATO:0001488 +name: cellular motility +def: "A cellular quality inhering in a cell by virtue of whether the bearer exhibits the ability to move spontaneously." [thefreedictionary.com:thefreedictionary.com] +comment: Term should be obsoleted and the GO term cellular motility should be used instead. +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001396 ! cellular quality + +[Term] +id: PATO:0001490 +name: heterochronic growth +def: "A growth quality of a process inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced or increased growth." [PATOC:MAH] +subset: value_slim +is_a: PATO:0001433 ! growth quality of occurrent + +[Term] +id: PATO:0001491 +name: neotenous growth +def: "A paedomorphic growth quality which is due to a reduced rate." [PATOC:mh] +subset: value_slim +synonym: "neotenic growth" EXACT [] +is_a: PATO:0001749 ! paedomorphic growth + +[Term] +id: PATO:0001492 +name: growth rate +comment: This term will be obsoleted; Use GO:growth and PATO:rate. +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0050001 ! rate of continuous process + +[Term] +id: PATO:0001493 +name: hypertrophic growth +comment: This term will be obsoleted; Use GO:growth and PATO:rate. +subset: value_slim +is_a: PATO:0001492 ! growth rate +relationship: is_opposite_of PATO:0001494 ! hypotrophic growth + +[Term] +id: PATO:0001494 +name: hypotrophic growth +comment: This term will be obsoleted; Use GO:growth and PATO:rate. +subset: value_slim +is_a: PATO:0001492 ! growth rate +relationship: is_opposite_of PATO:0001493 ! hypertrophic growth + +[Term] +id: PATO:0001495 +name: notched +def: "A concave quality inhering in a bearer by virtue of the bearer's shape being a V-shaped cut." [thefreedictionary.com:thefreedictionary.com] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "indented" RELATED [] +is_a: PATO:0001857 ! concave + +[Term] +id: PATO:0001496 +name: brood quality +def: "A reproductive quality inhering in the young of an animal by virtue of the bearer's being cared for at one time." [WordNet:WordNet] +subset: attribute_slim +is_a: PATO:0001434 ! reproductive quality + +[Term] +id: PATO:0001497 +name: brood viability +def: "A reproductive quality inhering in the young of an animal by virtue of the bearer's disposition to survive and develop normally." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001499 +name: spherical +alt_id: PATO:0000408 +def: "A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter)." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "globular" EXACT [] +synonym: "rotund" RELATED [] +is_a: PATO:0001865 ! spheroid +relationship: has_cross_section PATO:0000411 ! circular + +[Term] +id: PATO:0001500 +name: tapered +def: "A shape quality inhering in a bearer by virtue of the bearer's being gradually narrower or thinner toward one end." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +synonym: "taper" EXACT [] +is_a: PATO:0001419 ! sharp + +[Term] +id: PATO:0001501 +name: immature +def: "A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] +subset: value_slim +synonym: "underdeveloped" RELATED [] +is_a: PATO:0000261 ! maturity +relationship: is_opposite_of PATO:0001701 ! mature + +[Term] +id: PATO:0001502 +name: complexity +def: "A monadic quality of continuant inhering in a bearer by virtue of the bearer's being intricate and compounded." [WordNet:WordNet] +comment: TODO: obsolete this. +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001503 +name: simple +def: "A complexity quality in a bearer by virtue of the bearer's having few parts or being complicated or compound." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001502 ! complexity +disjoint_from: PATO:0001504 ! complex + +[Term] +id: PATO:0001504 +name: complex +def: "A complexity quality inhering in a bearer by virtue of the bearer's being intricate and compounded." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001502 ! complexity + +[Term] +id: PATO:0001505 +name: separated from +def: "A structural quality inhering in a bearer by virtue of the bearer's not being in contact with another entity, or of no longer being connected or joined with another entity." [WordNet:WordNet] +subset: relational_slim +subset: value_slim +synonym: "discontiguous" RELATED [] +synonym: "divided_from" RELATED [] +synonym: "splitted from" RELATED [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001506 +name: diastatic +def: "A structural quality inhering in a bearer by virtue of the bearer's separation of normally joined parts, such as the separation of adjacent bones without fracture or of certain abdominal muscles during pregnancy." [answers.com:answers.com] +subset: relational_slim +subset: value_slim +is_a: PATO:0001505 ! separated from + +[Term] +id: PATO:0001507 +name: disrupted +def: "A quality of a single process inhering in a bearer by virtue of the bearer's being interrupted of its normal course." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000057 ! occurrence + +[Term] +id: PATO:0001509 +name: functionality +def: "A quality of a single physical entity that arises by virtue of whether the bearer exhibits the ability to perform a regular function(s)." [PATOC:MAH] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001510 +name: functional +def: "A functionality quality held by the bearer when the latter is able to perform a regular function(s)." [PATOC:MAH] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001509 ! functionality +relationship: is_opposite_of PATO:0001511 ! non-functional + +[Term] +id: PATO:0001511 +name: non-functional +alt_id: PATO:0001640 +def: "A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s)." [PATC:MAH] +subset: disposition_slim +subset: value_slim +synonym: "defective" RELATED [] +synonym: "disfunctional" EXACT [] +synonym: "failure" RELATED [] +synonym: "functional failure" EXACT [] +is_a: PATO:0001509 ! functionality +relationship: is_opposite_of PATO:0001510 ! functional + +[Term] +id: PATO:0001512 +name: punctate +def: "A pattern inhering in a surface by virtue of the bearer's being marked by the presence of dots, punctures, points or pits." [medical-dictionary:medical-dictionary] +subset: mpath_slim +subset: value_slim +synonym: "dotted" RELATED [] +synonym: "spotted" RELATED [] +synonym: "stippled" RELATED [] +is_a: PATO:0000330 ! irregular spatial pattern + +[Term] +id: PATO:0001514 +name: delaminated +def: "A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer." [PATOC:cjm] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001515 +name: variable color +def: "A color quality inhering in a bearer by virtue of the bearer's being uneven in color." [PATOC:NC] +subset: value_slim +synonym: "murky" RELATED [] +is_a: PATO:0000019 ! color pattern + +[Term] +id: PATO:0001516 +name: focus +def: "An optical quality where light rays originating from a point on the object converge." [Wikipedia:http\://en.wikipedia.org/wiki/Focus_(optics)] +subset: attribute_slim +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0001517 +name: focused +def: "An optical quality inhering in a bearer by virtue of the bearer's having focus." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001516 ! focus + +[Term] +id: PATO:0001518 +name: blurry +def: "An optical quality inhering in a bearer by virtue of the bearer's lacking focus." [PATOC:NC] +subset: value_slim +is_a: PATO:0001516 ! focus + +[Term] +id: PATO:0001519 +name: sound quality +def: "A quality inhering in a bearer by virtue of vibration, as perceived by the sense of hearing." [Wikipedia:http\://en.wikipedia.org/wiki/Sound_quality] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001520 +name: sound frequency +def: "The frequency of transmitted vibrations." [thefreedictionary.com:thefreedictionary.com] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000044 ! frequency + +[Term] +id: PATO:0001521 +name: sound amplitude +def: "A physical quality inhering in a sound wave by virtue of the maximum magnitude (value without regard to sign) of its disturbance." [answers.com:answers.com] +subset: attribute_slim +synonym: "loudness" BROAD [] +is_a: PATO:0000080 ! amplitude + +[Term] +id: PATO:0001522 +name: sound speed +def: "A physical quality inhering in sound by virtue of the bearer's travelling speed in a given medium under specified conditions." [Wikipedia:http\://en.wikipedia.org/wiki/Sound_speed] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000008 ! speed + +[Term] +id: PATO:0001523 +name: sound wavelength +def: "A physical quality which is equal to the quotient of the speed of a sound wave divided by its wavelength." [Wikipedia:http\://en.wikipedia.org/wiki/Sound_wavelength] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001242 ! wavelength + +[Term] +id: PATO:0001524 +name: intrasonic +def: "A sound frequency in the range of 0-20 Hz." [studyphysics:studyphysics] +subset: value_slim +is_a: PATO:0001520 ! sound frequency + +[Term] +id: PATO:0001525 +name: sonic +def: "A sound frequency in the range of 20 to 20.000 Hz." [url:http\://www.studyphysics.ca/] +subset: value_slim +is_a: PATO:0001520 ! sound frequency + +[Term] +id: PATO:0001526 +name: ultrasonic +def: "A sound frequency in the range of 20 000 + Hz." [studyphysics:studyphysics] +subset: value_slim +is_a: PATO:0001520 ! sound frequency + +[Term] +id: PATO:0001527 +name: quiet +def: "A sound amplitude which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001519 ! sound quality + +[Term] +id: PATO:0001528 +name: loud +def: "A sound amplitude which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001519 ! sound quality + +[Term] +id: PATO:0001529 +name: cellular spatiotemporal quality +def: "A spatiotemporal quality inhering in a cell." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001530 +name: behavioral quality of a process +def: "A quality of a single process inhering in a bearer by virtue of the bearer's behavior." [PATOC:GVG] +subset: attribute_slim +synonym: "behavioral quality of occurrent" EXACT [] +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001531 +name: cellular adhesivity +def: "A cellular quality that exists by virtue of the disposition of the cell to adhere to other cells and molecules, through the emergent action of the molecular parts of the cell surface." [PATOC:cjm] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001396 ! cellular quality +is_a: PATO:0001431 ! adhesivity + +[Term] +id: PATO:0001532 +name: mono-colored +def: "A color pattern inhering in a bearer by virtue of the bearer's having one hue." [PATOC:GVG] +subset: value_slim +synonym: "evenly colored" EXACT [] +synonym: "homogeneously colored" EXACT [] +synonym: "homogenously pigmented" RELATED [] +synonym: "uniformly colored" EXACT [] +is_a: PATO:0000019 ! color pattern + +[Term] +id: PATO:0001533 +name: multi-colored +def: "A color pattern inhering in a bearer by virtue of bearer's having two or more hues or degrees of saturation." [PATOC:GVG] +subset: value_slim +synonym: "variegated" EXACT [] +is_a: PATO:0000019 ! color pattern + +[Term] +id: PATO:0001534 +name: motley +def: "A color pattern inhering in a bearer by virtue of bearer's having 3 or more hues or degrees of saturations." [merriam-webster.:merriam-webster.] +subset: value_slim +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0001535 +name: dappled +def: "A color pattern inhering in a bearer by virtue of bearer's being marked with small spots, patches, or specks of hue or degree of saturation differing from that of the background." [merriam-webster.:merriam-webster.] +subset: value_slim +synonym: "speckled" RELATED [] +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0001536 +name: solubility +def: "A molecular quality that inheres in a molecular entity by virtue of the bearer's disposition to dissolve in a liquid." [edp:edp] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality + +[Term] +id: PATO:0001537 +name: soluble in +def: "A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid." [edp:edp] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "soluble" EXACT [] +is_a: PATO:0001536 ! solubility +disjoint_from: PATO:0001538 ! insoluble in +relationship: is_opposite_of PATO:0001538 ! insoluble in + +[Term] +id: PATO:0001538 +name: insoluble in +def: "A solubility quality inhering in a substance by virtue of the bearer's inability of a substance to dissolve in a liquid." [edp:edp] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "insoluble" EXACT [] +is_a: PATO:0001536 ! solubility +relationship: is_opposite_of PATO:0001537 ! soluble in + +[Term] +id: PATO:0001539 +name: amylose composition +def: "A compositional quality inhering in an bearer by virtue of the bearer's quantities or relative ratios of amylose of the inhering entity." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +synonym: "amylose compositionality" EXACT [] +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001540 +name: glutinous +def: "An amylose composition quality inhering in an bearer by virtue of the bearer's having negligible or no amylose content." [TO:TO] +subset: value_slim +is_a: PATO:0001539 ! amylose composition + +[Term] +id: PATO:0001541 +name: non-glutinous +def: "An amylose composition quality inhering in an bearer by virtue of the bearer's having high amount of amylose content." [TO:TO] +subset: value_slim +is_a: PATO:0001539 ! amylose composition + +[Term] +id: PATO:0001542 +name: delayed phase +def: "A phase which starts later than natural start point." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0001543 +name: flexibility +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking." [merriam-webster:merriam-webster] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001546 ! quality of a solid + +[Term] +id: PATO:0001544 +name: flexible +def: "A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking." [merriam-webster:merriam-webster] +subset: disposition_slim +subset: value_slim +synonym: "bendy" EXACT [] +is_a: PATO:0001543 ! flexibility +relationship: is_opposite_of PATO:0001545 ! inflexible + +[Term] +id: PATO:0001545 +name: inflexible +def: "A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking." [merriam-webster:merriam-webster] +subset: disposition_slim +subset: value_slim +synonym: "stiff" EXACT [] +synonym: "stiffness" RELATED [] +is_a: PATO:0001543 ! flexibility +relationship: is_opposite_of PATO:0001544 ! flexible + +[Term] +id: PATO:0001546 +name: quality of a solid +def: "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity characterized by particles arranged such that their shape and volume are relatively stable." [Chemistry:http\://chemistry.about.com/od/chemistryglossary/a/soliddefinition.htm] +subset: attribute_slim +synonym: "solidity" EXACT [] +is_a: PATO:0002198 ! quality of a substance + +[Term] +id: PATO:0001547 +name: quality of a gas +def: "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape." [Chemistry:http\://chemistry.about.com/od/chemistryglossary/a/gasdefinition.htm, PATOC:GVG] +subset: attribute_slim +synonym: "gaseous" EXACT [] +is_a: PATO:0002198 ! quality of a substance + +[Term] +id: PATO:0001548 +name: quality of a liquid +def: "A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape." [url:http\://www.chemistry-dictionary.com/definition/liquid.php] +subset: attribute_slim +synonym: "liquidity" EXACT [] +is_a: PATO:0002198 ! quality of a substance + +[Term] +id: PATO:0001549 +name: increased sensitivity toward +def: "A sensitivity toward an external stimulus which is higher than normal/average." [PATO:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high sensitivity toward" EXACT [] +synonym: "increased sensitivity" EXACT [] +is_a: PATO:0000516 ! sensitive toward +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000516 ! sensitive toward +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001550 ! decreased sensitivity toward + +[Term] +id: PATO:0001550 +name: decreased sensitivity toward +def: "A sensitivity toward an external stimulus which is lower than normal/average." [PATO:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "decreased sensitivity" EXACT [] +synonym: "low sensitivity toward" EXACT [] +is_a: PATO:0000516 ! sensitive toward +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000516 ! sensitive toward +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001549 ! increased sensitivity toward + +[Term] +id: PATO:0001551 +name: increased sensitivity of a process +def: "A sensitivity of a process which is higher than normal or average." [PATO:GVG] +subset: relational_slim +subset: value_slim +synonym: "high sensitivity of occurrent" EXACT [] +synonym: "increased sensitivity of occurrent" EXACT [] +is_a: PATO:0001457 ! sensitivity of a process +is_a: PATO:0002304 ! increased process quality +intersection_of: PATO:0001457 ! sensitivity of a process +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001552 ! decreased sensitivity of a process + +[Term] +id: PATO:0001552 +name: decreased sensitivity of a process +def: "A sensitivity of a process which is lower than normal or average." [PATO:GVG] +subset: relational_slim +subset: value_slim +synonym: "decreased sensitivity of occurrent" EXACT [] +synonym: "low sensitivity of occurrent" EXACT [] +is_a: PATO:0001457 ! sensitivity of a process +is_a: PATO:0002302 ! decreased process quality +intersection_of: PATO:0001457 ! sensitivity of a process +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001551 ! increased sensitivity of a process + +[Term] +id: PATO:0001553 +name: increased sensitivity of a process to oxygen +def: "A sensitivity of occurrent to oxygen which is higher than normal or average." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high sensitivity of occurrent to oxygen" EXACT [] +is_a: PATO:0001459 ! aerobic (for occurrence) +is_a: PATO:0001551 ! increased sensitivity of a process +intersection_of: PATO:0001459 ! aerobic (for occurrence) +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001554 ! decreased sensitivity of a process to oxygen + +[Term] +id: PATO:0001554 +name: decreased sensitivity of a process to oxygen +def: "A sensitivity of a process to oxygen which is lower than normal or average." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low sensitivity of occurrent to oxygen" EXACT [] +is_a: PATO:0001459 ! aerobic (for occurrence) +is_a: PATO:0001552 ! decreased sensitivity of a process +intersection_of: PATO:0001459 ! aerobic (for occurrence) +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001553 ! increased sensitivity of a process to oxygen + +[Term] +id: PATO:0001555 +name: has number of +def: "The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts." [PATOC:CJM] +subset: attribute_slim +subset: relational_slim +synonym: "cardinality" RELATED [] +synonym: "extra or missing physical or functional parts" EXACT [] +synonym: "has or lacks parts of type" EXACT [] +synonym: "mereological quality" EXACT [] +synonym: "number" RELATED [] +synonym: "number of" EXACT [] +xref: OBO_REL:has_part +is_a: PATO:0001241 ! physical object quality +relationship: reciprocal_of PATO:0000070 ! amount + +[Term] +id: PATO:0001558 +name: lacking processual parts +def: "A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001564 ! extra or missing processual parts +relationship: reciprocal_of PATO:0000462 ! absent + +[Term] +id: PATO:0001559 +name: having extra function +def: "A functionality quality which is held by the bearer when the latter is able to perform additional or different function(s)." [PATO:MAH] +subset: disposition_slim +subset: value_slim +synonym: "having supernumerary functions" EXACT [] +is_a: PATO:0001509 ! functionality +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001509 ! functionality +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal + +[Term] +id: PATO:0001561 +name: having extra processual parts +def: "A quality of a process inhering in a bearer by virtue of the bearer's having additional processual parts." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "having supernumerary processual parts" EXACT [] +is_a: PATO:0001564 ! extra or missing processual parts + +[Term] +id: PATO:0001562 +name: decreased mass +alt_id: PATO:0000579 +def: "A mass which is lower than normal or average." [PATO:GVG] +subset: value_slim +synonym: "low mass" EXACT [] +synonym: "small mass" EXACT [] +is_a: PATO:0000125 ! mass +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000125 ! mass +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001563 ! increased mass + +[Term] +id: PATO:0001563 +name: increased mass +alt_id: PATO:0000578 +def: "A mass which is higher than normal or average." [PATO:GVG] +subset: value_slim +synonym: "high mass" EXACT [] +synonym: "large mass" EXACT [] +is_a: PATO:0000125 ! mass +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000125 ! mass +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001562 ! decreased mass + +[Term] +id: PATO:0001564 +name: extra or missing processual parts +def: "A quality of a process inhering in a bearer by virtue of the bearer's processual parts." [PATOC:GVG] +subset: relational_slim +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001566 +name: distributed +alt_id: PATO:0001513 +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +synonym: "diffuse" EXACT [] +synonym: "scattered" EXACT [] +is_a: PATO:0000060 ! spatial pattern +disjoint_from: PATO:0001629 ! aggregated +relationship: is_opposite_of PATO:0001567 ! undistributed + +[Term] +id: PATO:0001567 +name: undistributed +def: "A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +relationship: is_opposite_of PATO:0001566 ! distributed + +[Term] +id: PATO:0001570 +name: having decreased processual parts +def: "A quality of a process inhering in a bearer by virtue of the bearer's having fewer processual parts." [PATO:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001564 ! extra or missing processual parts + +[Term] +id: PATO:0001571 +name: dilated +def: "A size quality inhering in a bearer by virtue of the bearer's being made wider or larger in all dimensions." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000586 ! increased size + +[Term] +id: PATO:0001573 +name: isometrical +def: "A symmetry quality inhering in a bearer by virtue of the bearer's having equal dimensions or measurements." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0000965 ! symmetry + +[Term] +id: PATO:0001574 +name: flow rate +def: "A physical quality inhering in a bearer by virtue of the bearer's motion characteristic." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001906 ! movement quality + +[Term] +id: PATO:0001575 +name: decreased pressure +def: "A pressure which is relatively low." [PATO:GVG] +subset: value_slim +synonym: "low pressure" EXACT [] +is_a: PATO:0001025 ! pressure +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001025 ! pressure +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001576 ! increased pressure + +[Term] +id: PATO:0001576 +name: increased pressure +def: "A pressure which is relatively high." [PATO:GVG] +subset: value_slim +synonym: "high pressure" EXACT [] +is_a: PATO:0001025 ! pressure +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001025 ! pressure +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001575 ! decreased pressure + +[Term] +id: PATO:0001577 +name: increased permeability +def: "A permeability which is relatively high." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high permeability" EXACT [] +is_a: PATO:0000982 ! permeable +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000982 ! permeable +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001578 ! decreased permeability + +[Term] +id: PATO:0001578 +name: decreased permeability +def: "A permeability which is relatively low." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low permeability" EXACT [] +is_a: PATO:0000982 ! permeable +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000982 ! permeable +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001577 ! increased permeability + +[Term] +id: PATO:0001579 +name: contractility +def: "A physical quality that is the ability to contract or shrink." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001580 +name: increased contractility +def: "A contractility which is relatively high." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high contractility" EXACT [] +is_a: PATO:0001690 ! contractile +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001690 ! contractile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001581 ! decreased contractility + +[Term] +id: PATO:0001581 +name: decreased contractility +def: "A contractility which is relatively low." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low contractility" EXACT [] +is_a: PATO:0001690 ! contractile +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001690 ! contractile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001580 ! increased contractility + +[Term] +id: PATO:0001582 +name: obsolete relaxational quality +def: "A spatial quality inhering in an inactive muscle or muscle fibers by virtue of the bearer's exhibiting gradual lengthening." [WordNet:WordNet] +comment: GO has now relevant relation terms which should be used instead. +is_obsolete: true + +[Term] +id: PATO:0001583 +name: decreased variability +def: "A variability which is relatively low." [PATO:GVG] +subset: value_slim +synonym: "low variability" EXACT [] +is_a: PATO:0001227 ! variant +is_a: PATO:0002301 ! decreased quality +intersection_of: PATO:0001227 ! variant +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001584 ! increased variability + +[Term] +id: PATO:0001584 +name: increased variability +def: "A variability which is relatively high." [PATO:GVG] +subset: value_slim +synonym: "high variability" EXACT [] +is_a: PATO:0001227 ! variant +is_a: PATO:0002300 ! increased quality +intersection_of: PATO:0001227 ! variant +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001583 ! decreased variability + +[Term] +id: PATO:0001585 +name: conductivity +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to transmit of an entity through a medium." [PATOC:GVG] +comment: Examples could be heat or electricity or sound. +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001586 +name: variability of rate +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits rate variation or change." [PATO:GVG] +subset: value_slim +is_a: PATO:0001303 ! variability +relationship: towards PATO:0000161 ! rate + +[Term] +id: PATO:0001587 +name: increased variability of rate +def: "A variability of rate which is relatively high." [PATO:GVG] +subset: value_slim +synonym: "high variability of rate" EXACT [] +is_a: PATO:0001586 ! variability of rate +is_a: PATO:0002300 ! increased quality +intersection_of: PATO:0001586 ! variability of rate +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001588 ! decreased variability of rate + +[Term] +id: PATO:0001588 +name: decreased variability of rate +def: "A variability of rate which is relatively low." [PATO:GVG] +subset: value_slim +synonym: "low variability of rate" EXACT [] +is_a: PATO:0001586 ! variability of rate +is_a: PATO:0002301 ! decreased quality +intersection_of: PATO:0001586 ! variability of rate +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001587 ! increased variability of rate + +[Term] +id: PATO:0001589 +name: obsolete enhanced +def: "Increased, intensified." [PATOC:GVG] +comment: Obsoleted because it used to be a child of behavioral quality, which really meant increased magnitude of a given behavior. Now this can be done by using increased magnitude with another quality. +is_obsolete: true +consider: PATO:0002017 + +[Term] +id: PATO:0001590 +name: overlap with +def: "A structural quality inhering in a bearer by virtue of the bearer's coinciding spatially, partially or wholly with another entity." [PATO:GVG] +subset: relational_slim +subset: value_slim +synonym: "overlap" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001591 +name: curvature +def: "A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending." [WordNet:WordNet] +subset: attribute_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001592 +name: increased curvature +def: "A curvature which is relatively high." [PATO:GVG] +subset: value_slim +is_a: PATO:0000406 ! curved +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000406 ! curved +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001593 ! decreased curvature + +[Term] +id: PATO:0001593 +name: decreased curvature +def: "A curvature which is relatively low." [PATO:GVG] +subset: value_slim +is_a: PATO:0000406 ! curved +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000406 ! curved +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001592 ! increased curvature + +[Term] +id: PATO:0001594 +name: arched +def: "A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch." [WordNet:WordNet] +subset: cell_quality +is_a: PATO:0001857 ! concave + +[Term] +id: PATO:0001595 +name: depth +def: "A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimenision." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0001596 +name: increased depth +alt_id: PATO:0001666 +def: "A depth quality which is relatively high." [PATO:GVG] +subset: value_slim +synonym: "deep" EXACT [] +is_a: PATO:0000586 ! increased size +is_a: PATO:0001595 ! depth +intersection_of: PATO:0001595 ! depth +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001472 ! decreased depth + +[Term] +id: PATO:0001597 +name: everted +def: "An oriented quality inhering in a bearer by virtue of the bearer's being turned outward in placement." [thefreedictionary:thefreedictionary] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000614 ! oriented + +[Term] +id: PATO:0001598 +name: protruding +alt_id: PATO:0001644 +def: "A quality inhering in a bearer by virtue of the bearer's extending out above or beyond a surface or boundary." [WordNet:WordNet] +subset: value_slim +synonym: "protruding" EXACT [] +synonym: "relational protruding quality" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001599 +name: rotated +def: "An oriented quality inhering in a bearer by virtue of the bearer's being relocated around an axis." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "rotation" EXACT [] +is_a: PATO:0000614 ! oriented + +[Term] +id: PATO:0001600 +name: posteriorly rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the rear of organism." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001599 ! rotated + +[Term] +id: PATO:0001601 +name: anteriorly rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the front of an organism." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001599 ! rotated + +[Term] +id: PATO:0001602 +name: distended +def: "A size quality inhering in a bearer by virtue of the bearer's being abnormally expanded or increased in size." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +synonym: "expanded" RELATED [] +is_a: PATO:0000586 ! increased size + +[Term] +id: PATO:0001603 +name: increased life span +def: "A life span which is relatively high." [PATO:GVG] +synonym: "high life span" EXACT [] +is_a: PATO:0000050 ! life span +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000050 ! life span +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001604 ! decreased life span + +[Term] +id: PATO:0001604 +name: decreased life span +def: "A life span which is relatively low." [PATO:GVG] +synonym: "low life span" EXACT [] +is_a: PATO:0000050 ! life span +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000050 ! life span +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001603 ! increased life span + +[Term] +id: PATO:0001605 +name: disheveled +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being in disarray; extremely disorderly." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0000330 ! irregular spatial pattern + +[Term] +id: PATO:0001606 +name: greasy +def: "A coating which is oily and slippery." [.answers.com:.answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002012 ! coating + +[Term] +id: PATO:0001607 +name: matted +def: "A tangled quality inhering in a bearer by virtue of the bearer's being not possible to unravel." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001846 ! tangled + +[Term] +id: PATO:0001608 +name: patchy +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being marked by, consisting of, or diversified with patches." [Merriam-Webster:Merriam-Webster] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000330 ! irregular spatial pattern + +[Term] +id: PATO:0001609 +name: sparse +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being scattered; spread irregularly, and at a distance from each other." [biology.lsu:biology.lsu] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0001611 +name: variability of color +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits color variation or change." [PATO:GVG] +subset: attribute_slim +is_a: PATO:0001303 ! variability +relationship: towards PATO:0000014 ! color + +[Term] +id: PATO:0001612 +name: increased variability of color +def: "A variability of color which is relatively high." [PATO:GVG] +subset: value_slim +synonym: "high variability of color" EXACT [] +is_a: PATO:0001615 ! variant color +is_a: PATO:0002300 ! increased quality +intersection_of: PATO:0001615 ! variant color +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001613 ! decreased variability of color + +[Term] +id: PATO:0001613 +name: decreased variability of color +def: "A variability of color which is relatively low." [PATO:GVG] +subset: value_slim +synonym: "low variability of color" EXACT [] +is_a: PATO:0001615 ! variant color +is_a: PATO:0002301 ! decreased quality +intersection_of: PATO:0001615 ! variant color +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001612 ! increased variability of color + +[Term] +id: PATO:0001614 +name: invariant color +def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color." [PATO:GVG] +subset: value_slim +is_a: PATO:0001611 ! variability of color +relationship: is_opposite_of PATO:0001615 ! variant color + +[Term] +id: PATO:0001615 +name: variant color +def: "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour." [PATO:GVG] +subset: value_slim +is_a: PATO:0001611 ! variability of color +relationship: is_opposite_of PATO:0001614 ! invariant color + +[Term] +id: PATO:0001617 +name: deformed +def: "A morphological quality inhering in a bearer by virtue of the bearer's being distorted in form." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +synonym: "disfigured" RELATED [] +synonym: "distorted" RELATED [] +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0001618 +name: increased tonicity +def: "A tonicity which is relatively high." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high tonicity" EXACT [] +is_a: PATO:0001439 ! tonicity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001439 ! tonicity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001619 ! decreased tonicity + +[Term] +id: PATO:0001619 +name: decreased tonicity +def: "A tonicity which is relatively low." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low tonicity" EXACT [] +is_a: PATO:0001439 ! tonicity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001439 ! tonicity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001618 ! increased tonicity + +[Term] +id: PATO:0001620 +name: turgor +def: "A structural quality inhering in a cell or blood vessel or capillary by virtue of the bearer's being in a rigid state of fullness resulting from pressure of the contents against the wall or membrane." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001621 +name: decreased turgor +def: "A turgor which is relatively low." [PATO:GVG] +subset: cell_quality +subset: value_slim +synonym: "low turgor" EXACT [] +is_a: PATO:0001620 ! turgor +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001620 ! turgor +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001622 ! increased turgor + +[Term] +id: PATO:0001622 +name: increased turgor +def: "A turgor which is relatively high." [PATO:GVG] +subset: cell_quality +subset: value_slim +synonym: "high turgor" EXACT [] +is_a: PATO:0001620 ! turgor +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001620 ! turgor +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001621 ! decreased turgor + +[Term] +id: PATO:0001623 +name: atrophied +def: "A size quality inhering in a bearer by virtue of a part or parts of the bearer's being decreased in size due to reduction in tissue mass through wasting." [Wiikipedia:Wasting, Wikipedia:Atrophy] +subset: mpath_slim +subset: value_slim +synonym: "atrophic" EXACT [] +is_a: PATO:0000587 ! decreased size + +[Term] +id: PATO:0001624 +name: decreased functionality +alt_id: PATO:0001556 +alt_id: PATO:0001568 +alt_id: PATO:0001641 +alt_id: PATO:0001642 +def: "A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s)." [PATO:MAH] +subset: disposition_slim +subset: value_slim +synonym: "dysfunction" BROAD [] +synonym: "dysfunctional" BROAD [] +synonym: "having decreased function" EXACT [] +synonym: "impaired" RELATED [] +synonym: "lacks function of type" EXACT [] +synonym: "low functionality" EXACT [] +synonym: "partial functionality" EXACT [] +is_a: PATO:0001510 ! functional +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001510 ! functional +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001625 ! increased functionality + +[Term] +id: PATO:0001625 +name: increased functionality +def: "A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s)." [PATO:MAH] +subset: disposition_slim +subset: value_slim +synonym: "high functionality" EXACT [] +is_a: PATO:0001510 ! functional +is_a: PATO:0001559 ! having extra function +intersection_of: PATO:0001510 ! functional +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001624 ! decreased functionality + +[Term] +id: PATO:0001626 +name: sufficiency +def: "A structural quality inhering in a bearer by virtue of whether the bearer has enough functionality." [PATO:GVG] +comment: This term and children should probably be obsoleted. +subset: attribute_slim +synonym: "adequacy" RELATED [] +is_a: PATO:0001509 ! functionality + +[Term] +id: PATO:0001627 +name: sufficient +def: "A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality." [PATO:GVG] +subset: value_slim +synonym: "adequate" RELATED [] +is_a: PATO:0001626 ! sufficiency +relationship: is_opposite_of PATO:0001628 ! insufficient + +[Term] +id: PATO:0001628 +name: insufficient +def: "A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality." [PATO:GVG] +subset: value_slim +synonym: "inadequate" RELATED [] +is_a: PATO:0001626 ! sufficiency +relationship: is_opposite_of PATO:0001627 ! sufficient + +[Term] +id: PATO:0001629 +name: aggregated +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +synonym: "clumped" EXACT [] +synonym: "clustered" EXACT [] +is_a: PATO:0000330 ! irregular spatial pattern + +[Term] +id: PATO:0001630 +name: dispersed +def: "A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001632 +name: anterior to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front of an organism relative to another entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "preceding" EXACT [] +synonym: "ventral_to" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001633 +name: posterior to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear of an organism relative to another entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "posterior (human torso)" EXACT [] +synonym: "superior (human head)" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001634 +name: necessity (continuant) +def: "A quality of a single physical entity inhering in a bearer by virtue of whether the bearer is essential or indispensable." [WordNet:WordNet] +subset: attribute_slim +is_a: PATO:0001509 ! functionality + +[Term] +id: PATO:0001635 +name: necessary (continuant) +def: "A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being essential or indispensable." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001634 ! necessity (continuant) +disjoint_from: PATO:0001636 ! unnecessary (continuant) +relationship: is_opposite_of PATO:0001636 ! unnecessary (continuant) + +[Term] +id: PATO:0001636 +name: unnecessary (continuant) +def: "A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001634 ! necessity (continuant) +relationship: is_opposite_of PATO:0001635 ! necessary (continuant) + +[Term] +id: PATO:0001637 +name: necessity of occurrent +def: "A quality of single process inhering in a bearer by virtue of whether the bearer is essential or indispensable." [PATO:GVG] +subset: attribute_slim +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001638 +name: necessary (occurrent) +def: "A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable." [PATO:GVG] +subset: value_slim +is_a: PATO:0001637 ! necessity of occurrent +relationship: is_opposite_of PATO:0001639 ! unnecessary (occurrent) + +[Term] +id: PATO:0001639 +name: unnecessary (occurrent) +def: "A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable." [PATO:GVG] +subset: value_slim +is_a: PATO:0001637 ! necessity of occurrent +relationship: is_opposite_of PATO:0001638 ! necessary (occurrent) + +[Term] +id: PATO:0001643 +name: stubby +def: "A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001645 +name: protruding into +def: "A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary into the surface or boundary of another entity." [PATOC:nc] +subset: relational_slim +subset: value_slim +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0001646 +name: protruding out of +def: "A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary and outwards in relation to the physical space occupied by another entity." [PATOC:nc] +subset: relational_slim +subset: value_slim +synonym: "exits through" RELATED [] +synonym: "exposed" RELATED [] +synonym: "extruding from" EXACT [] +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0001648 +name: circumference +def: "An 1-D extent quality which is equal to the length of the closed curve of a circle." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001711 ! perimeter + +[Term] +id: PATO:0001649 +name: curved lateral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001650 +name: increased resistance to +def: "A resistance to a stimulus which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high resistance to" EXACT [] +synonym: "increased resistance" EXACT [] +is_a: PATO:0001178 ! resistant to +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001178 ! resistant to +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001651 ! decreased resistance to + +[Term] +id: PATO:0001651 +name: decreased resistance to +def: "A resistance to a stimulus which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "decreased resistance" EXACT [] +synonym: "low resistance to" EXACT [] +is_a: PATO:0001178 ! resistant to +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001178 ! resistant to +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001650 ! increased resistance to + +[Term] +id: PATO:0001652 +name: alignment +def: "A spatial quality inhering in a bearer by virtue of the bearer's spatial positioning with respect to an additional entity." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0000140 ! position +relationship: has_part PATO:0000133 ! orientation + +[Term] +id: PATO:0001653 +name: aligned with +def: "An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity." [PATO:GVG] +subset: relational_slim +subset: value_slim +synonym: "aligned" EXACT [] +synonym: "aligned to" RELATED [] +is_a: PATO:0001652 ! alignment +relationship: is_opposite_of PATO:0001654 ! misaligned with + +[Term] +id: PATO:0001654 +name: misaligned with +def: "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "misaligned" EXACT [] +synonym: "unaligned with" EXACT [] +is_a: PATO:0001652 ! alignment +relationship: is_opposite_of PATO:0001653 ! aligned with + +[Term] +id: PATO:0001655 +name: osmolarity +def: "A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per liter of solution." [Wikipedia:http\://en.wikipedia.org/wiki/Osmolarity] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0000033 ! concentration of + +[Term] +id: PATO:0001656 +name: decreased osmolarity +def: "A osmolarity which is relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "low osmolarity" EXACT [] +is_a: PATO:0001655 ! osmolarity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001655 ! osmolarity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001657 ! increased osmolarity + +[Term] +id: PATO:0001657 +name: increased osmolarity +def: "A osmolarity which is relatively high." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "high osmolarity" EXACT [] +is_a: PATO:0001655 ! osmolarity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001655 ! osmolarity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001656 ! decreased osmolarity + +[Term] +id: PATO:0001658 +name: dorsally rotated +def: "A rotatiotion quality inhering in a bearer by virtue of being rotated towards the back or upper surface of an organism." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001599 ! rotated + +[Term] +id: PATO:0001659 +name: ventrally rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the abdomen of an organism." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001599 ! rotated + +[Term] +id: PATO:0001660 +name: obsolete decreased action potential +def: "An action potential which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low action potential" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0001661 +name: obsolete increased action potential +def: "An action potential which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high action potential" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0001662 +name: fragility +def: "A structural quality inhering in a bearer by virtue of the bearer's disposition to being damaged or destroyed." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001663 +name: increased solubility +def: "A solubility which is relatively high." [PATO:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high solubility" EXACT [] +is_a: PATO:0001537 ! soluble in +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001537 ! soluble in +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001664 ! decreased solubility + +[Term] +id: PATO:0001664 +name: decreased solubility +def: "A solubility which is relatively low." [PATO:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "low solubility" EXACT [] +is_a: PATO:0001537 ! soluble in +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001537 ! soluble in +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001663 ! increased solubility + +[Term] +id: PATO:0001665 +name: superficial +alt_id: PATO:0001471 +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being located near a surface." [Dictionary.com:Dictionary.com] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "superficial to" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001667 +name: attached to +def: "An attachment quality inhering in a bearer by virtue of the bearer's connection or association with another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "affixed to" RELATED [] +synonym: "attached" EXACT [] +is_a: PATO:0001435 ! attachment quality + +[Term] +id: PATO:0001668 +name: associated with +def: "A structural quality inhering in a bearer by virtue of the bearer's being in close proximity and physically interacting with another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "associated" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001669 +name: increased susceptibility toward +def: "A susceptibility toward an external stimulus which is higher than normal/average." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high susceptibility toward" EXACT [] +synonym: "increased susceptibility" EXACT [] +is_a: PATO:0001152 ! susceptible toward +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001152 ! susceptible toward +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001670 ! decreased susceptibility toward + +[Term] +id: PATO:0001670 +name: decreased susceptibility toward +def: "A susceptibility toward an external stimulus which is lower than normal/average." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "decreased susceptibility" EXACT [] +synonym: "low susceptibility toward" EXACT [] +is_a: PATO:0001152 ! susceptible toward +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001152 ! susceptible toward +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001669 ! increased susceptibility toward + +[Term] +id: PATO:0001671 +name: increased distribution +def: "A distribution which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high distribution" EXACT [] +is_a: PATO:0001475 ! increased position +is_a: PATO:0001566 ! distributed +intersection_of: PATO:0001566 ! distributed +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001672 ! decreased distribution + +[Term] +id: PATO:0001672 +name: decreased distribution +def: "A distribution which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low distribution" EXACT [] +is_a: PATO:0001476 ! decreased position +is_a: PATO:0001566 ! distributed +intersection_of: PATO:0001566 ! distributed +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001671 ! increased distribution + +[Term] +id: PATO:0001673 +name: cystic +def: "Structure quality that is the presence of closed epithelium bounded capsules containing one or more liquid or solid organism substances." [PATOC:MAH] +comment: Cystic is an abnormal condition. +subset: value_slim +synonym: "cysts" NARROW [] +is_a: PATO:0002014 ! structure, cavities + +[Term] +id: PATO:0001674 +name: catalytic (activity) concentration +def: "A concentration quality inhering in a bearer by virtue of the bearer's catalytic activity divided by the volume of the system." [IUPAC:IUPAC] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0000033 ! concentration of + +[Term] +id: PATO:0001675 +name: decreased efficiency +def: "An efficiency which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low efficiency" EXACT [] +is_a: PATO:0001678 ! efficient +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001678 ! efficient +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001676 ! increased efficiency + +[Term] +id: PATO:0001676 +name: increased efficiency +def: "An efficiency which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high efficiency" EXACT [] +is_a: PATO:0001678 ! efficient +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001678 ! efficient +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001675 ! decreased efficiency + +[Term] +id: PATO:0001677 +name: inefficient +def: "An efficiency quality inhering in a bearer by virtue of the bearer's lacking efficiency." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001029 ! efficiency +disjoint_from: PATO:0001678 ! efficient +relationship: is_opposite_of PATO:0001678 ! efficient + +[Term] +id: PATO:0001678 +name: efficient +def: "An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001029 ! efficiency +relationship: is_opposite_of PATO:0001677 ! inefficient + +[Term] +id: PATO:0001679 +name: specific volume +def: "A volume quality inhering in a mass of substance by virtue of the amount of 3-dimensional space it occupies." [Wikipedia:http\://en.wikipedia.org/wiki/Specific_volume] +comment: The reciprocal of density. +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000918 ! volume + +[Term] +id: PATO:0001680 +name: molar volume +def: "A volume quality inhering in a homogeneous substance containing 6.02 x 1023 atoms or molecules by virtue of the amount of 3-dimensional space it occupies." [Wikipedia:http\://en.wikipedia.org/wiki/Molar_volume] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000918 ! volume + +[Term] +id: PATO:0001681 +name: molar mass +def: "A physical quality that inheres in a homogeneous substance containing 6.02 x 1023 atoms or molecules." [Wikipedia:http\://en.wikipedia.org/wiki/Molar_mass] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000125 ! mass + +[Term] +id: PATO:0001682 +name: magnetism +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to exert an attractive or repulsive force on other entities." [Wikipedia:http\://en.wikipedia.org/wiki/Magnetism] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001683 +name: increased magnetism +def: "A magnetism which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high magnetism" EXACT [] +is_a: PATO:0001685 ! magnetic +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001685 ! magnetic +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001684 ! decreased magnetism + +[Term] +id: PATO:0001684 +name: decreased magnetism +def: "A magnetism which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low magnetism" EXACT [] +is_a: PATO:0001685 ! magnetic +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001685 ! magnetic +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001683 ! increased magnetism + +[Term] +id: PATO:0001685 +name: magnetic +def: "A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001682 ! magnetism +disjoint_from: PATO:0001686 ! non-magnetic +relationship: is_opposite_of PATO:0001686 ! non-magnetic + +[Term] +id: PATO:0001686 +name: non-magnetic +def: "A magnetic quality inhering in a bearer by virtue of the bearer's inability to exert magnitism." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001682 ! magnetism +relationship: is_opposite_of PATO:0001685 ! magnetic + +[Term] +id: PATO:0001687 +name: elevation +def: "A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface." [Trailillustrated:Trailillustrated] +subset: attribute_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001688 +name: increased elevation +def: "An elevation which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "elevated" RELATED [] +synonym: "high elevation" EXACT [] +is_a: PATO:0001475 ! increased position +is_a: PATO:0001687 ! elevation +intersection_of: PATO:0001687 ! elevation +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001689 ! decreased elevation + +[Term] +id: PATO:0001689 +name: decreased elevation +def: "An elevation which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low elevation" EXACT [] +is_a: PATO:0001476 ! decreased position +is_a: PATO:0001687 ! elevation +intersection_of: PATO:0001687 ! elevation +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001688 ! increased elevation + +[Term] +id: PATO:0001690 +name: contractile +def: "A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted." [PATOC:GVG] +comment: This refers to the disposition of the bearer. +subset: disposition_slim +subset: value_slim +is_a: PATO:0001579 ! contractility +disjoint_from: PATO:0001691 ! non-contractile +relationship: is_opposite_of PATO:0001691 ! non-contractile + +[Term] +id: PATO:0001691 +name: non-contractile +def: "A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted." [PATOC:GVG] +comment: This refers to the disposition of the bearer. +subset: disposition_slim +subset: value_slim +is_a: PATO:0001579 ! contractility +relationship: is_opposite_of PATO:0001690 ! contractile + +[Term] +id: PATO:0001693 +name: increased viscosity +def: "A viscosity which relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high viscosity" EXACT [] +is_a: PATO:0000998 ! viscous +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000998 ! viscous +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001694 ! decreased viscosity + +[Term] +id: PATO:0001694 +name: decreased viscosity +def: "A viscosity which relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low viscosity" EXACT [] +is_a: PATO:0000998 ! viscous +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000998 ! viscous +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001693 ! increased viscosity + +[Term] +id: PATO:0001695 +name: increased fecundity +def: "A fecundity which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high fecundity" EXACT [] +is_a: PATO:0000273 ! fecundity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000273 ! fecundity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001696 ! decreased fecundity + +[Term] +id: PATO:0001696 +name: decreased fecundity +def: "A fecundity which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low fecundity" EXACT [] +is_a: PATO:0000273 ! fecundity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000273 ! fecundity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001695 ! increased fecundity + +[Term] +id: PATO:0001697 +name: decreased photosensitivity +def: "A photosensitivity which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "low photosensitivity" EXACT [] +is_a: PATO:0000547 ! photosensitive +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000547 ! photosensitive +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001698 ! increased photosensitivity + +[Term] +id: PATO:0001698 +name: increased photosensitivity +def: "A photosensitivity which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high photosensitivity" EXACT [] +is_a: PATO:0000547 ! photosensitive +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000547 ! photosensitive +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001697 ! decreased photosensitivity + +[Term] +id: PATO:0001699 +name: regular sleep pattern +def: "A sleep pattern which has regular start and/or end times." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000062 ! sleep pattern +relationship: is_opposite_of PATO:0001700 ! irregular sleep pattern + +[Term] +id: PATO:0001700 +name: irregular sleep pattern +def: "A sleep pattern which has irregular start and/or end times." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000062 ! sleep pattern +relationship: is_opposite_of PATO:0001699 ! regular sleep pattern + +[Term] +id: PATO:0001701 +name: mature +def: "A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] +subset: value_slim +is_a: PATO:0000261 ! maturity +relationship: is_opposite_of PATO:0001501 ! immature + +[Term] +id: PATO:0001702 +name: saturated violet +def: "A color consisting of violet hue and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright violet" RELATED [] +is_a: PATO:0001424 ! violet + +[Term] +id: PATO:0001703 +name: desaturated violet +def: "A color consisting of violet hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale violet" EXACT [] +is_a: PATO:0001424 ! violet + +[Term] +id: PATO:0001704 +name: light violet +def: "A color consisting of violet hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001424 ! violet + +[Term] +id: PATO:0001705 +name: dark violet +def: "A color consisting of violet hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001424 ! violet + +[Term] +id: PATO:0001706 +name: behavioural inactive +def: "A behavioral quality inhering in a bearer by virtue of the bearer's disposition to lack activity." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002265 ! behavioural activity +disjoint_from: PATO:0001707 ! behavioural active +relationship: is_opposite_of PATO:0001707 ! behavioural active + +[Term] +id: PATO:0001707 +name: behavioural active +def: "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002265 ! behavioural activity +relationship: is_opposite_of PATO:0001706 ! behavioural inactive + +[Term] +id: PATO:0001708 +name: 1-D extent +def: "A size quality inhering in an bearer by virtue of the bearer's extension in one dimension." [PATOC:GVG] +subset: attribute_slim +synonym: "1-D size" EXACT [] +is_a: PATO:0000117 ! size + +[Term] +id: PATO:0001709 +name: 2-D extent +def: "A size quality inhering in an bearer by virtue of the bearer's extension in two dimensions." [PATOC:GVG] +subset: attribute_slim +synonym: "2-D size" EXACT [] +is_a: PATO:0000117 ! size + +[Term] +id: PATO:0001710 +name: 3-D extent +def: "A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions." [PATOC:GVG] +subset: attribute_slim +synonym: "3D size" EXACT [] +is_a: PATO:0000117 ! size + +[Term] +id: PATO:0001711 +name: perimeter +def: "An 1-D extent quality inhering in two-dimensional bearer by virtue of being equal to the distance around it." [Wikipedia:http\://en.wikipedia.org/wiki/Perimeter] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0001712 +name: increased perimeter +def: "A perimeter which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000573 ! increased length +is_a: PATO:0001711 ! perimeter +intersection_of: PATO:0001711 ! perimeter +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001713 ! decreased perimeter + +[Term] +id: PATO:0001713 +name: decreased perimeter +def: "A perimeter which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000574 ! decreased length +is_a: PATO:0001711 ! perimeter +intersection_of: PATO:0001711 ! perimeter +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001712 ! increased perimeter + +[Term] +id: PATO:0001714 +name: increased diameter +def: "A diameter which is relatively large." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000573 ! increased length +is_a: PATO:0001334 ! diameter +intersection_of: PATO:0001334 ! diameter +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001715 ! decreased diameter + +[Term] +id: PATO:0001715 +name: decreased diameter +def: "A diameter which is relatively small." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000574 ! decreased length +is_a: PATO:0001334 ! diameter +intersection_of: PATO:0001334 ! diameter +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001714 ! increased diameter + +[Term] +id: PATO:0001716 +name: non-fragile +def: "A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking." [thefreedictionary.com:thefreedictionary.com] +subset: attribute_slim +subset: disposition_slim +synonym: "resilient" RELATED [] +synonym: "strong" RELATED [] +synonym: "tough" RELATED [] +is_a: PATO:0001662 ! fragility +relationship: is_opposite_of PATO:0001362 ! fragile + +[Term] +id: PATO:0001717 +name: radiation emitting intensity quality +def: "A radiation emitting quality which obtains by the intensity of the bearer emitted radiation." [PATOC:GVG] +is_a: PATO:0001299 ! radiation emitting quality + +[Term] +id: PATO:0001718 +name: luminance +def: "A quality that exists by virtue of the luminous intensity per unit area projected in a given direction." [Wikipedia:http\://en.wikipedia.org/wiki/Luminance] +is_a: PATO:0001296 ! luminous flux + +[Term] +id: PATO:0001719 +name: receptivity +def: "A behavioral quality which holds by virtue of whether the bearer exhibits the ability to receive another agentitive entity." [PATOC:cjm] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0001720 +name: female receptivity +def: "A behavioral quality which holds by virtue of extent of the receptiveness of a female to male advances." [GO:GO] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0001719 ! receptivity + +[Term] +id: PATO:0001721 +name: male receptivity +def: "A behavioral quality which holds by virtue of extent of the receptiveness of a male to female advances." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0001719 ! receptivity + +[Term] +id: PATO:0001723 +name: increased female receptivity +def: "A female receptivity which is relatively high." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "high female receptivity" EXACT [] +is_a: PATO:0001720 ! female receptivity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001720 ! female receptivity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001724 ! decreased female receptivity + +[Term] +id: PATO:0001724 +name: decreased female receptivity +def: "A female receptivity which is relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "low female receptivity" EXACT [] +is_a: PATO:0001720 ! female receptivity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001720 ! female receptivity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001723 ! increased female receptivity + +[Term] +id: PATO:0001725 +name: increased male receptivity +def: "A male receptivity which is relatively high." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "high male receptivity" EXACT [] +is_a: PATO:0001721 ! male receptivity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001721 ! male receptivity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001726 ! decreased male receptivity + +[Term] +id: PATO:0001726 +name: decreased male receptivity +def: "A male receptivity which is relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "low male receptivity" EXACT [] +is_a: PATO:0001721 ! male receptivity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001721 ! male receptivity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001725 ! increased male receptivity + +[Term] +id: PATO:0001727 +name: disposition +def: "A quality inhering in a bearer by virtue of the bearer's prevailing tendency, mood, or inclination." [Merriam-Webster:Merriam-Webster] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "tendency" RELATED [] +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001728 +name: multi-cellular organismal disposition +def: "A disposition inhering in a multi-cellular organism." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001727 ! disposition + +[Term] +id: PATO:0001729 +name: shedability +def: "An organismal quality inhering in a bearer by virtue of the bearer's disposition to lose an entitity by natural process." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0001730 +name: deciduous (generic) +def: "A quality inhering in a bearer by virtue of the bearer's disposition to shed body parts." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001729 ! shedability + +[Term] +id: PATO:0001731 +name: deciduous (plant) +def: "A quality inhering in a plant by virtue of the bearer's disposition to shed foliage." [PATOC:cjm] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001729 ! shedability + +[Term] +id: PATO:0001732 +name: non-deciduous (any body part) +def: "A quality inhering in a plant by virtue of the bearer's disposition to not shed any body part." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001729 ! shedability + +[Term] +id: PATO:0001733 +name: evergreen (plant) +def: "A quality inhering in a plant by virtue of the bearer's disposition to retain foliage." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001729 ! shedability + +[Term] +id: PATO:0001734 +name: semi-deciduous(plant) +def: "A quality inhering in a plant by virtue of the bearer's disposition to being between evergeen and deciduous." [PATOC:cjm] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001729 ! shedability + +[Term] +id: PATO:0001735 +name: liquid configuration +def: "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of liquids." [PATOC:GVG] +synonym: "liquid" EXACT [] +is_a: PATO:0001548 ! quality of a liquid + +[Term] +id: PATO:0001736 +name: solid configuration +def: "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of solids." [PATOC:GVG] +subset: value_slim +synonym: "solid" EXACT [] +is_a: PATO:0001546 ! quality of a solid + +[Term] +id: PATO:0001737 +name: gaseus configuration +def: "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of gases." [PATOC:GVG] +synonym: "gas" EXACT [] +is_a: PATO:0001547 ! quality of a gas + +[Term] +id: PATO:0001738 +name: dissociated from +def: "A structural quality inhering in a bearer by virtue of the bearer's lacking physically interaction with another entity." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "dissociated" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001739 +name: radiation quality +def: "A quality that inheres in an bearer by virtue of how that bearer interacts with radiation." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001740 +name: activity (of a radionuclide) +def: "A radiation quality inhering in a radioactive substance by virtue of its transformation (disintegration) rate." [PATOC:GVG] +subset: attribute_slim +synonym: "radioactivity" EXACT [] +is_a: PATO:0001739 ! radiation quality + +[Term] +id: PATO:0001741 +name: radioactive +def: "A radiation quality inhering in bearer by virtue of the bearer's exhibiting or being caused by radioactivity." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001740 ! activity (of a radionuclide) + +[Term] +id: PATO:0001742 +name: increased radioactivity +def: "A radioactivity which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "high radioactivity" EXACT [] +is_a: PATO:0001741 ! radioactive +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001741 ! radioactive +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001743 ! decreased radioactivity + +[Term] +id: PATO:0001743 +name: decreased radioactivity +def: "A radioactivity which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "low radioactivity" EXACT [] +is_a: PATO:0001741 ! radioactive +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001741 ! radioactive +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001742 ! increased radioactivity + +[Term] +id: PATO:0001744 +name: radiation exposure +def: "A radiation quality inhering in a bearer by virtue of what the bearer receives as a result of being exposed to ionizing radiation." [hps:hps] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001739 ! radiation quality + +[Term] +id: PATO:0001745 +name: radiation absorbed dose +def: "A radiation exposure quality inhering in a substance by virtue of the radiation energy \"deposited\" in a kilogram of a substance." [arpansa:arpansa] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001744 ! radiation exposure + +[Term] +id: PATO:0001746 +name: radiation equivalent dose +def: "A radiation exposure quality inhering in a tissue by virtue of the relation between the absorbed dose to the effective biological damage of the radiation to that tissue." [arpansa:arpansa] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001744 ! radiation exposure + +[Term] +id: PATO:0001747 +name: radiation effective dose +def: "A radiation exposure quality inhering in an organ by virtue of the multiplication of an equivalent dose to that organ multiplied by the tissue weighting factor for that organ." [arpansa:arpansa] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001744 ! radiation exposure + +[Term] +id: PATO:0001748 +name: invaginated +def: "A shape quality in which a portion of the outermost boundary of an entity folds in space such that a portion that was originally convex is now concave." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001857 ! concave + +[Term] +id: PATO:0001749 +name: paedomorphic growth +def: "A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth." [PATOC:mh] +subset: value_slim +synonym: "hypoplastic growth" EXACT [] +synonym: "pedomorphic growth" EXACT [] +is_a: PATO:0001490 ! heterochronic growth +relationship: is_opposite_of PATO:0001752 ! peramorphic growth + +[Term] +id: PATO:0001750 +name: postdisplaced growth +def: "A paedomorphic growth quality which is due to a delayed onset." [PATOC:mh] +subset: value_slim +is_a: PATO:0001749 ! paedomorphic growth + +[Term] +id: PATO:0001751 +name: progenetic growth +def: "A paedomorphic growth quality which is due to an ealier offset." [PATOC:mh] +subset: value_slim +is_a: PATO:0001749 ! paedomorphic growth + +[Term] +id: PATO:0001752 +name: peramorphic growth +def: "A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth." [PATOC:mh] +subset: attribute_slim +synonym: "hyperplastic growth" EXACT [] +is_a: PATO:0001490 ! heterochronic growth +relationship: is_opposite_of PATO:0001749 ! paedomorphic growth + +[Term] +id: PATO:0001753 +name: accelerated growth +def: "A peramorphic growth quality which is due to an increased rate." [PATOC:mh] +subset: value_slim +is_a: PATO:0001752 ! peramorphic growth + +[Term] +id: PATO:0001754 +name: predisplaced growth +def: "A peramorphic growth quality which is due to an earlier onset." [PATOC:mh] +subset: value_slim +synonym: "precocious growth" EXACT [] +is_a: PATO:0001752 ! peramorphic growth + +[Term] +id: PATO:0001755 +name: hypermorphic growth +def: "A peramorphic growth quality which is due to a delayed offset." [PATOC:mh] +subset: value_slim +is_a: PATO:0001752 ! peramorphic growth + +[Term] +id: PATO:0001756 +name: heat conductivity +def: "A conductivity quality inhering in a bearer by virtue of the bearer's disposition to spontaneous transfer of thermal energy from a region of higher temperature to a region of lower temperature." [Wikipedia:http\://en.wikipedia.org/wiki/Heat_conduction] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +synonym: "thermal conduction" EXACT [] +is_a: PATO:0001585 ! conductivity + +[Term] +id: PATO:0001757 +name: electrical conductivity +def: "A conductivity quality inhering in a bearer by virtue of the bearer's ability to convey electricity." [Wikipedia:http\://en.wikipedia.org/wiki/Electrical_conduction] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001585 ! conductivity + +[Term] +id: PATO:0001758 +name: nerve conductivity +def: "A conductivity quality inhering in motor and sensory nerves by virtue of the bearer's ability to convey electricity." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001757 ! electrical conductivity + +[Term] +id: PATO:0001759 +name: granular +def: "A composition quality inhering in a bearer by virtue of the bearer's containing granules." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001760 +name: female semi-fertile +subset: disposition_slim +subset: value_slim +is_a: PATO:0001767 ! semi-fertile +relationship: is_opposite_of PATO:0001763 ! female semi-sterile + +[Term] +id: PATO:0001761 +name: male semi-fertile +subset: disposition_slim +subset: value_slim +is_a: PATO:0001767 ! semi-fertile +relationship: is_opposite_of PATO:0001762 ! male semi-sterile + +[Term] +id: PATO:0001762 +name: male semi-sterile +subset: disposition_slim +subset: value_slim +is_a: PATO:0000279 ! male fertility +relationship: is_opposite_of PATO:0001761 ! male semi-fertile + +[Term] +id: PATO:0001763 +name: female semi-sterile +subset: disposition_slim +subset: value_slim +is_a: PATO:0000277 ! female fertility +relationship: is_opposite_of PATO:0001760 ! female semi-fertile + +[Term] +id: PATO:0001764 +name: increased age +def: "An age which is high relative to the normal or average." [PATOC:GVG] +subset: value_slim +synonym: "high age" EXACT [] +is_a: PATO:0000011 ! age +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000011 ! age +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001765 ! decreased age + +[Term] +id: PATO:0001765 +name: decreased age +def: "An age which is low relative to the normal or average." [PATOC:GVG] +subset: value_slim +synonym: "low age" EXACT [] +is_a: PATO:0000011 ! age +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000011 ! age +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001764 ! increased age + +[Term] +id: PATO:0001766 +name: obsolete cellular polarity +def: "A cellular quality inhering in a cell by virtue of its anisotropic intracellular organization." [PATOC:GVG] +subset: attribute_slim +subset: cell_quality +is_obsolete: true +consider: PATO:0001769 + +[Term] +id: PATO:0001767 +name: semi-fertile +subset: disposition_slim +subset: value_slim +is_a: PATO:0000274 ! fertility + +[Term] +id: PATO:0001768 +name: semi-lethal (sensu genetics) +def: "A viability quality inhering in a bearer or a population by virtue of some of it's members' inability to survive to reproduce." [PATOC:CVC] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001769 +name: positional polarity +def: "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an axis." [PATOC:MAH] +subset: attribute_slim +synonym: "cellular polarity" RELATED [PATOC:MAH] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001770 +name: semi-viable +def: "A viability quality inhering in a population by virtue of some of it's members' ability to survive." [PATOC:CVC] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001772 +name: surrounding +def: "A spatial quality inhering in a bearer by virtue of the bearer's being extended on all sides of another entity simultaneously." [thefreedictionary.com:thefreedictionary.com] +comment: Nedd to add reciprocal of relationship to 'surrounded by' PATO:0005016. +subset: relational_slim +subset: value_slim +synonym: "encircling" EXACT [] +synonym: "enclosing" EXACT [] +synonym: "wrapping" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001773 +name: monophasic +def: "A quality inhering in a bearer by virtue of the bearer's having only one phase or stage." [hefreedictionary.com:hefreedictionary.com] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0001774 +name: polyphasic +def: "A quality inhering in a bearer by virtue of the bearer's having or existing in many phases." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0001775 +name: dorsal-ventral polarity +def: "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the dorsal-ventral axis." [PATOC:MAH] +subset: value_slim +is_a: PATO:0001769 ! positional polarity + +[Term] +id: PATO:0001776 +name: increased flexibility +def: "A flexibility which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high flexibility" EXACT [] +is_a: PATO:0001544 ! flexible +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001544 ! flexible +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001777 ! decreased flexibility + +[Term] +id: PATO:0001777 +name: decreased flexibility +def: "A flexibility which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low flexibility" EXACT [] +is_a: PATO:0001544 ! flexible +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001544 ! flexible +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001776 ! increased flexibility + +[Term] +id: PATO:0001778 +name: increased strength +def: "A strength which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high strength" EXACT [] +is_a: PATO:0001230 ! strength +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001230 ! strength +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001779 ! decreased strength + +[Term] +id: PATO:0001779 +name: decreased strength +def: "A strength which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "weak" EXACT [] +is_a: PATO:0001230 ! strength +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001230 ! strength +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001778 ! increased strength + +[Term] +id: PATO:0001780 +name: dystrophic +def: "A size quality inhering in a bearer by virtue of the bearer's being abnormally developed, usually due to malnutrition." [Wiikipedia:Wiikipedia] +subset: mpath_slim +subset: value_slim +synonym: "dystrophied" EXACT [] +synonym: "dystrophy" RELATED [] +is_a: PATO:0000587 ! decreased size + +[Term] +id: PATO:0001781 +name: irregular thickness +def: "A thickness quality which lacks pattern." [PATOC:GVG] +is_a: PATO:0000915 ! thickness + +[Term] +id: PATO:0001782 +name: increased intensity +def: "An intensity which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high intensity" EXACT [] +is_a: PATO:0000049 ! intensity +is_a: PATO:0002300 ! increased quality +intersection_of: PATO:0000049 ! intensity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001783 ! decreased intensity + +[Term] +id: PATO:0001783 +name: decreased intensity +def: "An intensity which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low intensity" EXACT [] +is_a: PATO:0000049 ! intensity +is_a: PATO:0002301 ! decreased quality +intersection_of: PATO:0000049 ! intensity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001782 ! increased intensity + +[Term] +id: PATO:0001784 +name: bifurcated +alt_id: PATO:0001572 +def: "A branched quality inhering in a bearer by virtue of the bearer's being divided into two branches." [thefreedictionary.com:thefreedictionary.com] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "bifid" EXACT [] +synonym: "forked" RELATED [] +is_a: PATO:0000402 ! branched +is_a: PATO:0001786 ! split + +[Term] +id: PATO:0001785 +name: splayed +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outward." [PATOC:GVG] +comment: TODO: obsolete, definition too ambiguous. +subset: cell_quality +subset: value_slim +synonym: "flared" EXACT [] +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001786 +name: split +def: "A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions." [die.net:die.net] +subset: mpath_slim +subset: value_slim +synonym: "clefted" EXACT [] +synonym: "divided" RELATED [] +synonym: "forked" RELATED [] +synonym: "septate" NARROW [] +synonym: "subdivided" RELATED [] +is_a: PATO:0000052 ! shape +disjoint_from: PATO:0002034 ! undivided + +[Term] +id: PATO:0001787 +name: rotational curvature +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001591 ! curvature + +[Term] +id: PATO:0001788 +name: increased mass density +def: "A density which is higher relative to the normal or average." [PATOC:GVG] +subset: value_slim +synonym: "high density" EXACT [] +is_a: PATO:0001164 ! dense +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001164 ! dense +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001790 ! decreased mass density + +[Term] +id: PATO:0001789 +name: domed +def: "A curvature quality inhering in a bearer by virtue of the bearer's having a shape resembling a dome." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001790 +name: decreased mass density +def: "A density which is lower relative to the normal or average." [PATOC:GVG] +subset: value_slim +synonym: "low density" EXACT [] +is_a: PATO:0001164 ! dense +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001164 ! dense +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001788 ! increased mass density + +[Term] +id: PATO:0001791 +name: multi-localised +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being confined or restricted to multiple locations." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "multi-focal" EXACT [] +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0001792 +name: left side of +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located on left side of from the a another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001793 +name: right side of +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located on right side of a another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001794 +name: coiling +def: "A shape quality inhering in a bearer by virtue of the bearer's being wound in a continuous series of loops." [Online_Dictionary:Online_Dictionary] +subset: attribute_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001795 +name: increased coiling +def: "A coiling which is relatively high." [PATOC:GVG] +subset: cell_quality +subset: value_slim +synonym: "high coiling" EXACT [] +is_a: PATO:0000404 ! coiled +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000404 ! coiled +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001796 ! decreased coiling + +[Term] +id: PATO:0001796 +name: decreased coiling +def: "A coiling which is relatively low." [PATOC:GVG] +subset: cell_quality +subset: value_slim +synonym: "low coiling" EXACT [] +is_a: PATO:0000404 ! coiled +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000404 ! coiled +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001795 ! increased coiling + +[Term] +id: PATO:0001798 +name: kinked +def: "A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length." [thefreedictionary.com:thefreedictionary.com] +subset: cell_quality +subset: value_slim +synonym: "tightly curled" RELATED [] +synonym: "twisted" RELATED [] +is_a: PATO:0000617 ! bent + +[Term] +id: PATO:0001799 +name: ruffled +def: "A shape quality inhering in a bearer by virtue of the bearer's exhibiting disturbance of its smoothness or regularity." [.thefreedictionary.com:.thefreedictionary.com] +subset: cell_quality +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001800 +name: water composition +def: "A composition quality inhering in an bearer by virtue of the quantities or relative ratios of water of the inhering entity." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001801 +name: decreased water composition +def: "A composition quality inhering in an bearer by virtue of the reduction in amount of water the bearer contains." [Wikipedia:http\://en.wikipedia.org/wiki/Dehydrated] +subset: value_slim +synonym: "dehydrated" EXACT [] +synonym: "dry" RELATED [] +is_a: PATO:0001800 ! water composition +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001800 ! water composition +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal + +[Term] +id: PATO:0001802 +name: loose +def: "A pattern quality inhering in a bearer by virtue of the bearer's not being compact or dense in arrangement." [answers.com:answers.com] +subset: value_slim +is_a: PATO:0000330 ! irregular spatial pattern + +[Term] +id: PATO:0001803 +name: phototoxic +def: "A photosensitivity quality inhering in a bearer by virtue of the bearer's disposition to being susceptible to damage by light." [answers.com:answers.com] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000927 ! photosensitivity + +[Term] +id: PATO:0001804 +name: scaly +def: "A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with scales." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "squamous" RELATED [] +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0001805 +name: flaky +def: "A texture quality inhering in a bearer by virtue of the bearer's formed or tending to form flakes or thin, crisp fragments." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0001806 +name: sensitivity to irradiation +def: "A sensitivity quality inhering in a bearer by virtue of the bearer's exposure to radiation." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000085 ! sensitivity toward + +[Term] +id: PATO:0001807 +name: decreased sensitivity to irradiation +def: "A sensitivity to irradiation which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low sensitivity to irradiation" EXACT [] +is_a: PATO:0001806 ! sensitivity to irradiation +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001806 ! sensitivity to irradiation +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001808 ! increased sensitivity to irradiation + +[Term] +id: PATO:0001808 +name: increased sensitivity to irradiation +def: "A sensitivity to irradiation which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high sensitivity to irradiation" EXACT [] +is_a: PATO:0001806 ! sensitivity to irradiation +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001806 ! sensitivity to irradiation +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001807 ! decreased sensitivity to irradiation + +[Term] +id: PATO:0001809 +name: tight +def: "A pattern quality inhering in a bearer by virtue of the bearer's being compact or dense in arrangement." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000440 ! regular spatial pattern + +[Term] +id: PATO:0001810 +name: wrinkled +def: "A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by one or more creases in a normally smooth surface." [url:http\://www.thefreedictionary.com/wrinkled] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002255 ! grooved + +[Term] +id: PATO:0001811 +name: obsolete increased relaxation +def: "A relaxation which is relatively high." [PATOC:GVG] +comment: GO has now relevant relation terms which should be used instead. +subset: value_slim +synonym: "high relaxation" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0001812 +name: obsolete decreased relaxation +def: "A relaxation which is relatively low." [PATOC:GVG] +comment: GO has now relevant relation terms which should be used instead. +subset: value_slim +synonym: "low relaxation" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0001813 +name: atonicity +def: "A structural quality inhering in a bearer by virtue of the bearer's lack elastic tension that facilitate response to stimuli." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001439 ! tonicity + +[Term] +id: PATO:0001814 +name: dystonicity +def: "A structural quality inhering in a bearer by virtue of the bearer's impaired elastic tension that facilitate response to stimuli." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001439 ! tonicity + +[Term] +id: PATO:0001815 +name: fatigability +def: "A strength quality inhering in a bearer by virtue of the bearer's disposition to lose strength." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001230 ! strength + +[Term] +id: PATO:0001816 +name: increased fatigability +def: "A fatigability which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high fatigability" EXACT [] +is_a: PATO:0001779 ! decreased strength +is_a: PATO:0001815 ! fatigability +relationship: is_opposite_of PATO:0001817 ! decreased fatigability + +[Term] +id: PATO:0001817 +name: decreased fatigability +def: "A fatigability which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low fatigability" EXACT [] +is_a: PATO:0001778 ! increased strength +is_a: PATO:0001815 ! fatigability +relationship: is_opposite_of PATO:0001816 ! increased fatigability + +[Term] +id: PATO:0001818 +name: progressive +def: "A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time." [PATOC:GVG] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0002026 ! non-progressive + +[Term] +id: PATO:0001819 +name: atretic +def: "A morphological quality inhering in a bearer by virtue of the bearer's absence or closure of a normal body orifice or tubular passage." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "atresia" EXACT [] +is_a: PATO:0000608 ! closed + +[Term] +id: PATO:0001821 +name: imperforate +def: "A structural quality inhering in a bearer by virtue of the bearer's having no opening." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +synonym: "unperforated" EXACT [] +is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0002112 ! perforate + +[Term] +id: PATO:0001822 +name: wetness +def: "A quality inhering in a bearer by virtue of whether the bearer's being covered by a liquid." [wordreference.com:wordreference.com] +subset: attribute_slim +subset: mpath_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001823 +name: wet +def: "A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001822 ! wetness +disjoint_from: PATO:0001824 ! dry +relationship: is_opposite_of PATO:0001824 ! dry + +[Term] +id: PATO:0001824 +name: dry +def: "A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001822 ! wetness +relationship: is_opposite_of PATO:0001823 ! wet + +[Term] +id: PATO:0001825 +name: increased wetness +def: "A wetness quality that is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001823 ! wet +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001823 ! wet +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001826 ! decreased wetness + +[Term] +id: PATO:0001826 +name: decreased wetness +def: "A wetness quality that is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low wetness" EXACT [] +is_a: PATO:0001823 ! wet +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001823 ! wet +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001825 ! increased wetness + +[Term] +id: PATO:0001827 +name: pseudohermaphrodite +def: "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of one sex and external sexual characteristics of the other sex." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001894 ! phenotypic sex + +[Term] +id: PATO:0001828 +name: male pseudohermaphrodite +def: "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of male and external sexual characteristics of female." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001827 ! pseudohermaphrodite + +[Term] +id: PATO:0001829 +name: female pseudohermaphrodite +def: "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of female and external sexual characteristics of male." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001827 ! pseudohermaphrodite + +[Term] +id: PATO:0001830 +name: decreased female fertility +def: "A female fertility which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low female fertility" EXACT [] +is_a: PATO:0000888 ! female fertile +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000888 ! female fertile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001831 ! increased female fertility + +[Term] +id: PATO:0001831 +name: increased female fertility +def: "A female fertility which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high female fertility" EXACT [] +is_a: PATO:0000888 ! female fertile +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000888 ! female fertile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001830 ! decreased female fertility + +[Term] +id: PATO:0001832 +name: increased male fertility +def: "A male fertility which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high male fertility" EXACT [] +is_a: PATO:0000891 ! male fertile +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000891 ! male fertile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001833 ! decreased male fertility + +[Term] +id: PATO:0001833 +name: decreased male fertility +def: "A male fertility which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low male fertility" EXACT [] +is_a: PATO:0000891 ! male fertile +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000891 ! male fertile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001832 ! increased male fertility + +[Term] +id: PATO:0001834 +name: decreased fertility +def: "A fertility which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low fertility" EXACT [] +is_a: PATO:0000955 ! fertile +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000955 ! fertile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001835 ! increased fertility + +[Term] +id: PATO:0001835 +name: increased fertility +def: "A fertility which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high fertility" EXACT [] +is_a: PATO:0000955 ! fertile +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000955 ! fertile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001834 ! decreased fertility + +[Term] +id: PATO:0001836 +name: congested +def: "A structural quality inhering in a bearer with some kind of aperture or opening that is blocked or clogged." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001838 +name: decreased fluid flow +def: "A flow that is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low flow" EXACT [] +is_a: PATO:0002243 ! fluid flow rate +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002243 ! fluid flow rate +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001839 ! increased fluid flow + +[Term] +id: PATO:0001839 +name: increased fluid flow +def: "A fluid flow that is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high flow" EXACT [] +is_a: PATO:0002243 ! fluid flow rate +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002243 ! fluid flow rate +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001838 ! decreased fluid flow + +[Term] +id: PATO:0001841 +name: remittent intensity +def: "An intensity which is characterized by temporary abatement in severity." [answers.com:answers.com] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000049 ! intensity + +[Term] +id: PATO:0001842 +name: acidity +def: "A concentration quality inhering in a bearer by virtue of the bearer's containing acid (hydrogen ions)." [biology-online:biology-online] +subset: attribute_slim +subset: scalar_slim +synonym: "pH" EXACT [] +is_a: PATO:0000033 ! concentration of + +[Term] +id: PATO:0001843 +name: decreased acidity +def: "An acidity which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low acidity" EXACT [] +is_a: PATO:0001842 ! acidity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001842 ! acidity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001844 ! increased acidity + +[Term] +id: PATO:0001844 +name: increased acidity +def: "An acidity which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high acidity" EXACT [] +is_a: PATO:0001842 ! acidity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001842 ! acidity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001843 ! decreased acidity + +[Term] +id: PATO:0001845 +name: irregular rhythm +def: "A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm lacking pattern." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000078 ! rhythm quality + +[Term] +id: PATO:0001846 +name: tangled +def: "A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001847 +name: constricted +alt_id: PATO:0001837 +def: "A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically." [WordNet:WordNet] +subset: value_slim +synonym: "stenosis" EXACT [] +synonym: "stenotic" EXACT [] +synonym: "stricture" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001848 +name: asymmetrically curved +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved asymmetrically." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001849 +name: abrased +def: "A texture quality inhering in a bearer by virtue of a portion of the bearer's surface being scraped away." [answers.com:answers.com] +subset: value_slim +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0001850 +name: scarred +def: "A structural quality inhering in a bearer by virtue of the bearer's being fibrous tissue that replaces normal tissue destroyed by injury or disease." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001851 +name: swollen +def: "A structure quality inhering in a bearer by virtue of the bearer's exhibiting transient abnormal enlargement, not due to cell proliferation." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +synonym: "swelling" NARROW [] +is_a: PATO:0000141 ! structure +relationship: has_part PATO:0000586 ! increased size +relationship: has_part PATO:0001598 ! protruding + +[Term] +id: PATO:0001852 +name: dislocated +alt_id: PATO:0001479 +alt_id: PATO:0002158 +alt_id: PATO:0002159 +def: "A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +synonym: "dislocation" EXACT [] +synonym: "luxated" EXACT [] +synonym: "luxation" EXACT [] +synonym: "relational dislocated quality" EXACT [] +is_a: PATO:0002181 ! displaced + +[Term] +id: PATO:0001853 +name: hydrocephalic +def: "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of cerebral spinal fluid." [PATOC:mh] +subset: value_slim +is_a: PATO:0001450 ! edematous + +[Term] +id: PATO:0001854 +name: vertical +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being situated at right angles to the horizon." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0001855 +name: horizontal +def: "A positional quality inhering in a bearer by virtue of the bearer's being in the plane of the horizon." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001856 +name: introverted +def: "An oriented quality inhering in a bearer by virtue of the bearer's being turned inward upon itself." [die.net:die.net] +comment: For example, a tubular organ or part. +subset: value_slim +is_a: PATO:0000614 ! oriented + +[Term] +id: PATO:0001857 +name: concave +def: "A shape quality in a bearer by virtue of the bearer's curving inward." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0002005 ! concavity +relationship: is_opposite_of PATO:0001355 ! convex + +[Term] +id: PATO:0001858 +name: partially paralysed +def: "A functionality quality inhering in a bearer by virtue of being not completely paralysed." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002076 ! movement behavioral quality + +[Term] +id: PATO:0001859 +name: increased coordination +def: "A coordination which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high coordination" EXACT [] +is_a: PATO:0000769 ! coordinated +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000769 ! coordinated +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001860 ! decreased coordination + +[Term] +id: PATO:0001860 +name: decreased coordination +def: "A coordination which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low coordination" EXACT [] +is_a: PATO:0000769 ! coordinated +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000769 ! coordinated +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001859 ! increased coordination + +[Term] +id: PATO:0001861 +name: fasciculated +def: "A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "fascicled" EXACT [] +is_a: PATO:0002013 ! fasciculation +disjoint_from: PATO:0001959 ! defasciculated +relationship: is_opposite_of PATO:0001959 ! defasciculated + +[Term] +id: PATO:0001862 +name: lack of fertility in offspring +def: "A fertility quality inhering in a bearer by virtue of the bearer's disposition to make its offspring sterile." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "grandchildless" RELATED [] +is_a: PATO:0000274 ! fertility + +[Term] +id: PATO:0001863 +name: chronic +def: "A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration." [PATOC:cjm] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001309 ! duration +relationship: is_opposite_of PATO:0000389 ! acute + +[Term] +id: PATO:0001865 +name: spheroid +alt_id: PATO:0001864 +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. Includes spheres and oblate/prolate spheroids." [Wikipedia:http\://en.wikipedia.org/wiki/Spheroid] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "sphericality" RELATED [] +is_a: PATO:0002007 ! convex 3-D shape + +[Term] +id: PATO:0001866 +name: prolate +def: "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a polar diameter longer than its equatorial diameter." [Wikipedia:http\://en.wikipedia.org/wiki/Prolate] +subset: cell_quality +subset: value_slim +synonym: "prolate spheroid" RELATED [] +xref: Image:http\://upload.wikimedia.org/wikipedia/commons/8/88/ProlateSpheroid.png +is_a: PATO:0001865 ! spheroid + +[Term] +id: PATO:0001867 +name: rectangular +def: "A shape quality inhering in a bearer by virtue of it being a quadrilateral polygon in which all four angles are right angles." [Wikipedia:http\://en.wikipedia.org/wiki/Rectangular] +subset: cell_quality +subset: value_slim +xref: Image:http\://upload.wikimedia.org/wikipedia/en/e/ee/Shaperec.svg +is_a: PATO:0002317 ! parallelogram + +[Term] +id: PATO:0001868 +name: autofluorescence +def: "A fluorescence quality inhering in a bearer by virtue of the bearer's exhibiting fluorescence which is self-induced." [PATOC:mb] +subset: attribute_slim +is_a: PATO:0000018 ! fluorescence + +[Term] +id: PATO:0001869 +name: pathological +def: "A quality inhering in a bearer by virtue of the bearer's being abnormal and having a destructive effect on living tissue." [PATOC:cjm] +subset: abnormal_slim +subset: value_slim +is_a: PATO:0000460 ! abnormal + +[Term] +id: PATO:0001870 +name: crescent-shaped +def: "A shape quality inhering in a circular disk by virtue of the bearer's having a segment of another circle removed from its edge, so that what remains is a shape enclosed by two circular arcs of different diameters which intersect at two points (usually in such a manner that the enclosed shape does not include the center of the original circle)." [Wikipedia:http\://en.wikipedia.org/wiki/Crescent] +subset: cell_quality +subset: value_slim +synonym: "bow-shaped" RELATED [] +synonym: "crescentic" EXACT [] +synonym: "lunate" RELATED [] +xref: Image:http\://upload.wikimedia.org/wikipedia/commons/7/74/Crescent.svg +is_a: PATO:0002006 ! 2-D shape + +[Term] +id: PATO:0001871 +name: reniform +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having the shape of a kidney." [ISBN:0881923214] +subset: value_slim +synonym: "bean shaped" RELATED [] +synonym: "kidney-shaped" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001872 +name: cuboid +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resemblance to a cube (a 3-D shape with a square cross section)." [PATOC:MAH] +subset: cell_quality +subset: value_slim +synonym: "block-like" RELATED [] +synonym: "cuboidal" EXACT [] +is_a: PATO:0002007 ! convex 3-D shape +relationship: has_cross_section PATO:0000413 ! square + +[Term] +id: PATO:0001873 +name: cylindrical +alt_id: PATO:0001203 +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a consistently-sized round cross section." [PATOC:MAH] +subset: cell_quality +subset: value_slim +synonym: "rod-like" EXACT [] +synonym: "rod-shaped" EXACT [] +synonym: "tubulate" NARROW [] +is_a: PATO:0002007 ! convex 3-D shape +relationship: has_cross_section PATO:0000411 ! circular + +[Term] +id: PATO:0001874 +name: discoid +def: "A shape quality inhering in a bearer by virtue of the bearer's being cylindrical, in which the height is less than the diameter." [PATOC:cjm] +subset: cell_quality +subset: value_slim +synonym: "disc-shaped" EXACT [] +synonym: "disk-shaped" EXACT [] +is_a: PATO:0001873 ! cylindrical + +[Term] +id: PATO:0001875 +name: triangular +def: "A shape quality inhering in a bearer by virtue of the bearer's having three angles." [wordreference:wordreference] +subset: cell_quality +subset: value_slim +synonym: "delta shaped" RELATED [] +synonym: "deltoid" EXACT [] +synonym: "triangle" RELATED [] +synonym: "triangle-shaped" RELATED [] +is_a: PATO:0002006 ! 2-D shape + +[Term] +id: PATO:0001876 +name: dumbbell-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two parts, roughly spherical and of equal size, connected by a bar." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001877 +name: lanceolate +def: "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle; attached at the broad end." [PATOC:GVG] +subset: cell_quality +subset: value_slim +synonym: "spear-shaped" EXACT [] +is_a: PATO:0001419 ! sharp + +[Term] +id: PATO:0001878 +name: sigmoid +def: "A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped." [PATOC:CJM] +subset: cell_quality +subset: value_slim +synonym: "S-shaped" EXACT [] +synonym: "sigmoidal" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001879 +name: U-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter U." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +synonym: "horseshoe" NARROW [] +synonym: "horseshoe shaped" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001880 +name: caudate +def: "A quality inhering in a bearer by virtue of the bearer's having a tail or tail-like projection." [PATOC:cjm] +subset: value_slim +synonym: "caudal" EXACT [] +synonym: "tailed" RELATED [] +is_a: PATO:0000623 ! exserted + +[Term] +id: PATO:0001881 +name: arrow-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's forming two equal obtuse triangles with a short side in common." [ISBN:0881923214, RKC:RKC] +comment: Gradually enlarged at the base, like the head of an arrow. +subset: cell_quality +subset: value_slim +synonym: "sagittate" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001882 +name: limaciform +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a slug." [PATOC:CJM] +subset: cell_quality +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001883 +name: clavate +alt_id: PATO:0001797 +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's gradually becoming thicker towards the end." [MP:0000576] +subset: value_slim +synonym: "club-like" EXACT [] +synonym: "club-shaped" EXACT [] +synonym: "clubbed" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001884 +name: hydrophobicity +def: "A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001018 ! physical quality +disjoint_from: PATO:0001886 ! hydrophilicity +relationship: is_opposite_of PATO:0001886 ! hydrophilicity + +[Term] +id: PATO:0001885 +name: hydrophobic +def: "A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water." [WordNet:WordNet] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001884 ! hydrophobicity +relationship: is_opposite_of PATO:0001887 ! hydrophilic + +[Term] +id: PATO:0001886 +name: hydrophilicity +def: "A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water." [answers.com:answers.com] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001018 ! physical quality +relationship: is_opposite_of PATO:0001884 ! hydrophobicity + +[Term] +id: PATO:0001887 +name: hydrophilic +def: "A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water." [WordNet:WordNet] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001886 ! hydrophilicity +relationship: is_opposite_of PATO:0001885 ! hydrophobic + +[Term] +id: PATO:0001888 +name: miscibility +def: "A quality of a liquid inhering in a bearer by virtue of the bearer's ability to mix with (dissolve in) another liquid." [Chemicool:Chemicool] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001548 ! quality of a liquid + +[Term] +id: PATO:0001889 +name: scalloped +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having the border, edge, or outline cut into a series of segments of circles resembling a scallop-shell." [Oxford:EnglishDictionary] +subset: cell_quality +subset: value_slim +synonym: "crenate" EXACT [] +synonym: "crenulate" EXACT [] +is_a: PATO:0001976 ! serration + +[Term] +id: PATO:0001890 +name: tripartite +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being divided into three branches." [InfoVisual:InfoVisual] +subset: cell_quality +subset: value_slim +synonym: "trifurcate" EXACT [] +is_a: PATO:0000402 ! branched +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001891 +name: ovate +def: "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; egg-shaped." [PATOC:mc] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "eccentric" RELATED [] +synonym: "egg-shaped" EXACT [] +synonym: "oval" EXACT [] +synonym: "ovoid" EXACT [] +is_a: PATO:0001865 ! spheroid +relationship: has_cross_section PATO:0000946 ! oblong + +[Term] +id: PATO:0001892 +name: decreased odor +def: "An odor quality of having decreased odor." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001331 ! odorous +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001331 ! odorous +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001893 ! increased odor + +[Term] +id: PATO:0001893 +name: increased odor +def: "An odor quality of having increased odor." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001331 ! odorous +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001331 ! odorous +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001892 ! decreased odor + +[Term] +id: PATO:0001894 +name: phenotypic sex +def: "An organismal quality inhering in a bearer by virtue of the bearer's physical expression of sexual characteristics." [] +subset: attribute_slim +is_a: PATO:0000047 ! biological sex + +[Term] +id: PATO:0001895 +name: mating type +def: "A biological sex quality inhering in an individual or a population that undergo sexual reproduction." [wikipedia:wikipedia] +subset: attribute_slim +is_a: PATO:0000047 ! biological sex + +[Term] +id: PATO:0001896 +name: unlumenized +def: "A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances." [PATOC:MAH] +subset: value_slim +is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0001897 ! lumenized + +[Term] +id: PATO:0001897 +name: lumenized +def: "A structure quality inhering in a bearer by virtue of the bearer's having a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances." [PATOC:MAH] +comment: See GO term: GO:0031974 membrane-enclosed lumen [DEF:"The enclosed volume within a sealed membrane or between two sealed membranes"]. +subset: value_slim +is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0001896 ! unlumenized + +[Term] +id: PATO:0001898 +name: increased circumference +def: "A circumference which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001648 ! circumference +is_a: PATO:0001712 ! increased perimeter +intersection_of: PATO:0001648 ! circumference +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001899 ! decreased circumference + +[Term] +id: PATO:0001899 +name: decreased circumference +def: "A circumference which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001648 ! circumference +is_a: PATO:0001713 ! decreased perimeter +intersection_of: PATO:0001648 ! circumference +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001898 ! increased circumference + +[Term] +id: PATO:0001900 +name: front +def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction +relationship: is_opposite_of PATO:0001901 ! back + +[Term] +id: PATO:0001901 +name: back +def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction +relationship: is_opposite_of PATO:0001900 ! front + +[Term] +id: PATO:0001902 +name: unidirectional +def: "A directional quality inhering in a bearer by virtue of the bearer's having one direction only." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction + +[Term] +id: PATO:0001903 +name: bi-directional +def: "A directional quality inhering in a bearer by virtue of the bearer's having two directions." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction + +[Term] +id: PATO:0001904 +name: circling direction +def: "A directional quality inhering in a bearer by virtue of the bearer's direction approximating the shape of a circle." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction + +[Term] +id: PATO:0001905 +name: has normal numbers of parts of type +def: "The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part." [PATOC:CJM] +subset: relational_slim +synonym: "having physical part" EXACT [] +is_a: PATO:0001555 ! has number of +relationship: reciprocal_of PATO:0002050 ! normal amount + +[Term] +id: PATO:0001906 +name: movement quality +def: "A physical quality inhering in a bearer by virtue of the bearer's participation in movement." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001907 +name: botryoidal +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's being like the surface of a compact mass of grapes." [PATOC:cvs] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape + +[Term] +id: PATO:0001908 +name: multinucleate +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002505 ! nucleated + +[Term] +id: PATO:0001909 +name: trinucleate +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having three nuclei." [thefreedictionary:thefreedictionary] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001908 ! multinucleate + +[Term] +id: PATO:0001910 +name: folded +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's one part being layered over another connected part." [PATOC:cjm] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape + +[Term] +id: PATO:0001911 +name: circling +def: "A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting movement in a circular course." [PATOC:mb] +subset: value_slim +is_a: PATO:0002076 ! movement behavioral quality + +[Term] +id: PATO:0001912 +name: physiological state +def: "A quality of a single process inhering in a bearer by virtue of the state of bearer's mechanical, physical, and biochemical processes." [PATOC:mb] +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001913 +name: ictal +def: "A physiological state which is characterized by periods of high-frequency high amplitude electrical activity in neuronal tissue." [PATOC:mb] +is_a: PATO:0001912 ! physiological state + +[Term] +id: PATO:0001914 +name: non-ictal +def: "A physiological state which is characterized by normal electrical activity in neuronal tissue." [PATOC:mb] +is_a: PATO:0001912 ! physiological state + +[Term] +id: PATO:0001915 +name: anterodorsal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and upper surface of an organism relative to another entity." [PATOC:wd] +subset: relational_slim +subset: value_slim +is_a: PATO:0001632 ! anterior to + +[Term] +id: PATO:0001916 +name: posterodorsal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and upper surface of an organism relative to another entity." [PATOC:wd] +subset: relational_slim +subset: value_slim +is_a: PATO:0001633 ! posterior to + +[Term] +id: PATO:0001917 +name: anteroventral to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and abdomen of an organism relative to another entity." [PATOC:wd] +subset: relational_slim +subset: value_slim +is_a: PATO:0001632 ! anterior to + +[Term] +id: PATO:0001918 +name: posteroventral to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and abdomen of an organism relative to another entity." [PATOC:wd] +subset: relational_slim +subset: value_slim +is_a: PATO:0001633 ! posterior to + +[Term] +id: PATO:0001919 +name: mislocalised dorsally +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the back or upper surface of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001920 +name: mislocalised ventrally +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the abdomen of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001921 +name: mislocalised anteriorly +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the front of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001922 +name: mislocalised posteriorly +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the rear of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001923 +name: mislocalised laterally +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the side of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001924 +name: mislocalised medially +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the middle of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001925 +name: surface feature shape +def: "A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell." [PATOC:CJM] +comment: This quality either inheres directly in the surface, or in the entity that has the surface. For example, to say that a particular fly wing is curved is shorthand for saying the wing has a surface which is curved. +subset: attribute_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001926 +name: increased fluorescence +def: "A fluorescence which is higher than normal." [PATOC:GVG] +subset: value_slim +synonym: "high fluorescence" EXACT [] +is_a: PATO:0001290 ! fluorescent +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001290 ! fluorescent +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001927 ! decreased fluorescence + +[Term] +id: PATO:0001927 +name: decreased fluorescence +def: "A fluorescence which is lower than normal." [PATOC:GVG] +subset: value_slim +synonym: "low fluorescence" EXACT [] +is_a: PATO:0001290 ! fluorescent +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001290 ! fluorescent +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001926 ! increased fluorescence + +[Term] +id: PATO:0001928 +name: blistered +def: "A texture quality inhering in a bearer by virtue of a local accumulation of fluid underneath the surface of the bearer." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "blistering" NARROW [] +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0001929 +name: variability of shape +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits shape variation or change." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001303 ! variability +relationship: towards PATO:0000052 ! shape + +[Term] +id: PATO:0001930 +name: variant shape +def: "A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001929 ! variability of shape +relationship: is_opposite_of PATO:0001931 ! invariant shape + +[Term] +id: PATO:0001931 +name: invariant shape +def: "A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001929 ! variability of shape +relationship: is_opposite_of PATO:0001930 ! variant shape + +[Term] +id: PATO:0001932 +name: alternate placement +def: "A pattern quality inhering in a bearer by virtue of the bearer's being placed alternately one above the other." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000440 ! regular spatial pattern + +[Term] +id: PATO:0001933 +name: opposite +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned on opposite sides on the same plane." [ISBN:0881923214] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001934 +name: orbicular +def: "A shape quality inhering in a bearer by virtue of the bearer's being perfectly circular." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000411 ! circular + +[Term] +id: PATO:0001935 +name: obtuse +def: "A shape quality inhering in a bearer by virtue of the bearer's being roundish, a little inclining to be oblong." [ISBN:0881923214] +subset: value_slim +synonym: "roundish" EXACT [] +is_a: PATO:0000411 ! circular + +[Term] +id: PATO:0001936 +name: obovate +def: "A spheroid quality inhering in a bearer by virtue of the bearer's being egg-shaped and flat, with the narrow end attached to the base." [wordreference:wordreference] +subset: value_slim +synonym: "obovoid" RELATED [] +is_a: PATO:0001891 ! ovate + +[Term] +id: PATO:0001937 +name: spatulate +def: "A shape quality inhering in a bearer by virtue of the bearer's being oblong, with the lower end very much attenuated." [ISBN:0881923214] +subset: value_slim +synonym: "spathulate" EXACT [] +is_a: PATO:0000946 ! oblong + +[Term] +id: PATO:0001938 +name: rhomboid +def: "A spheroid quality inhering in a bearer by virtue of the bearer's being oval and a little angular in the middle." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0002317 ! parallelogram + +[Term] +id: PATO:0001940 +name: gigantic +def: "A size quality inhering in a bearer by virtue of the bearer's being many folds greater relative to the normal average." [PATOC:UMH] +subset: value_slim +synonym: "giant" EXACT [] +is_a: PATO:0000586 ! increased size + +[Term] +id: PATO:0001941 +name: yellow green +def: "A color consisting of yellow and green hues." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001942 +name: brown green +def: "A color consisting of brown and green hues." [PATOC:GVG] +synonym: "olive green" EXACT [] +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001943 +name: lilac +def: "A purple color which has low saturation and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000951 ! purple + +[Term] +id: PATO:0001944 +name: yellow orange +def: "A color consisting of yellow and orange hue." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000953 ! orange + +[Term] +id: PATO:0001945 +name: ochre +def: "A moderate yellow-orange to orange color." [wordreference:wordreference] +subset: value_slim +is_a: PATO:0001944 ! yellow orange + +[Term] +id: PATO:0001946 +name: banded +def: "A color pattern inhering in a bearer by virtue of bearer's exhibiting transverse stripes of one hue or degree of saturation crossing another." [ISBN:0881923214] +subset: value_slim +synonym: "striped" EXACT [] +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0001947 +name: netted +def: "A color pattern inhering in a bearer by virtue of bearer's being covered with reticulated lines of a different hue or degree of saturation." [ISBN:0881923214] +subset: value_slim +synonym: "net-like" EXACT [] +synonym: "reticulated" EXACT [] +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0001948 +name: furrowed +def: "A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by two or more parallel channels." [PATOC:JE] +subset: value_slim +synonym: "fluted" RELATED [] +is_a: PATO:0002255 ! grooved + +[Term] +id: PATO:0001949 +name: pointleted +def: "A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly in a little point." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0001419 ! sharp + +[Term] +id: PATO:0001950 +name: blunt +def: "A shape quality inhering in a bearer by virtue of the bearer's terminating gradually in a rounded end." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000944 ! sharpness + +[Term] +id: PATO:0001951 +name: whorled +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being in opposition round a common axis." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0001952 +name: distichous +def: "A spatial quality inhering in a bearer by virtue of the bearer's being arranged in two opposite rows (and hence in the same plane)." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001953 +name: decussate +def: "A pattern quality inhering in a bearer by virtue of the bearer's consisting of paired parts that alternately cross each other." [ISBN:0881923214] +subset: value_slim +synonym: "crosscutting" EXACT [] +synonym: "intercrossing" EXACT [] +synonym: "intersecting" EXACT [] +is_a: PATO:0000440 ! regular spatial pattern + +[Term] +id: PATO:0001954 +name: subulate +def: "A shape quality inhering in a bearer by virtue of the bearer's being linear, very narrow, tapering to a very fine point from a narrow base." [ISBN:0881923214] +subset: value_slim +synonym: "awl-shaped" EXACT [] +synonym: "needle-like" EXACT [] +is_a: PATO:0001199 ! linear + +[Term] +id: PATO:0001955 +name: cuneate +def: "A shape quality inhering in a bearer by virtue of the bearer's being narrowly triangular, wider at the apex and tapering toward the base." [wordreference:wordreference] +subset: value_slim +synonym: "wedge-shaped" EXACT [] +is_a: PATO:0001875 ! triangular + +[Term] +id: PATO:0001956 +name: variability of size +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits size variation or change." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001303 ! variability +relationship: towards PATO:0000117 ! size + +[Term] +id: PATO:0001957 +name: decreased variability of size +def: "A variability of size which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low variability of size" EXACT [] +is_a: PATO:0001956 ! variability of size +is_a: PATO:0002301 ! decreased quality +intersection_of: PATO:0001956 ! variability of size +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001958 ! increased variability of size + +[Term] +id: PATO:0001958 +name: increased variability of size +def: "A variability of size which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high variability of size" EXACT [] +is_a: PATO:0001956 ! variability of size +is_a: PATO:0002300 ! increased quality +intersection_of: PATO:0001956 ! variability of size +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001957 ! decreased variability of size + +[Term] +id: PATO:0001959 +name: defasciculated +def: "A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated." [PATOC:mw] +subset: value_slim +is_a: PATO:0002013 ! fasciculation +relationship: is_opposite_of PATO:0001861 ! fasciculated + +[Term] +id: PATO:0001960 +name: interdigitated +def: "A shape quality inhering in a bearer by virtue of the bearer's parts or projections being interlocked; for example, the fingers of two hands that are clasped." [PATOC:wdahdul] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001961 +name: in contact with +def: "A structural quality inhering in a bearer by virtue of the bearer's touching another entity." [PATOC:wdahdul] +subset: relational_slim +subset: value_slim +synonym: "contiguous" RELATED [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001962 +name: involute +def: "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled inwards spirally on each side." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000405 ! curled + +[Term] +id: PATO:0001963 +name: revolute +def: "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled backwards spirally on each side." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000405 ! curled + +[Term] +id: PATO:0001964 +name: circinate +def: "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled spirally downwards." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000405 ! curled + +[Term] +id: PATO:0001965 +name: reclinate +def: "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being bent down upon their stalk." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000405 ! curled + +[Term] +id: PATO:0001966 +name: convolute +def: "A curled quality inhering in a bearer by virtue of the bearer's one edge of its surface being wholly rolled up in another." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000405 ! curled + +[Term] +id: PATO:0001967 +name: actinodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having three or more primary branches diverging radially from a single point." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001968 +name: parallelodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having two or more parallel primary branches originate beside each other and converge apically." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001969 +name: craspedodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches terminating at the margin." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001970 +name: brochidodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches joined together in a series of prominent arches." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001971 +name: cladodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches freely branching toward the margin." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001972 +name: reticulodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches branching into a reticulum toward the margin." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001973 +name: cuspidate +def: "A shape quality inhering in a bearer by virtue of the bearer's being tapering gradually into a rigid point." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0001500 ! tapered + +[Term] +id: PATO:0001974 +name: retuse +def: "A shape quality inhering in a bearer by virtue of the bearer's terminating in a round end, the centre of which is depressed." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0001950 ! blunt + +[Term] +id: PATO:0001975 +name: unserrated +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0001976 ! serration +relationship: is_opposite_of PATO:0001206 ! serrated + +[Term] +id: PATO:0001976 +name: serration +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having or lacking sharp straight-edged teeth pointing to the apex." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002267 ! edge shape + +[Term] +id: PATO:0001977 +name: angular +def: "A shape quality inhering in a bearer by virtue of the bearer's having at least one salient angle on the margin." [PATOC:GVG] +subset: value_slim +synonym: "angulate" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001978 +name: cut +def: "A shape quality inhering in a bearer by virtue of the bearer's being regularly divided by deep incisions." [ISBN:0881923214] +subset: value_slim +synonym: "incised" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001979 +name: lobed +def: "A shape quality inhering in a bearer by virtue of the bearer's being partly divided into a determinate number of regions." [ISBN:0881923214] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001980 +name: digitate +def: "A shape quality inhering in a bearer by virtue of the bearer's having distinct parts arising from a common point or center." [thefreedictionary:thefreedictionary] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001981 +name: auriculate +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an ear." [url:http\://www.thefreedictionary.com/auriculate] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001982 +name: attenuate +def: "A shape quality inhering in a bearer by virtue of the bearer's gradually tapering to a slender point." [url:http\://www.thefreedictionary.com/attenuate] +subset: value_slim +is_a: PATO:0001500 ! tapered + +[Term] +id: PATO:0001983 +name: perfoliate +def: "A structural quality inhering in a bearer by virtue of the bearer's two basal lobes being united together." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001984 +name: decurrent +def: "A shape quality inhering in a bearer by virtue of the bearer's being prolonged below the point of insertion." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001985 +name: frozen +def: "A quality inhering in a bearer by virtue of the bearer's being kept below its freezing point." [OBI:OBI] +subset: value_slim +is_a: PATO:0000146 ! temperature + +[Term] +id: PATO:0001986 +name: dissolved +def: "A quality inhering in a bearer by virtue of the bearer's passing into solution." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001536 ! solubility + +[Term] +id: PATO:0001987 +name: saccular +def: "A structural quality inhering in a bearer by virtue of the bearer's having a three dimensional cavity with a narrow or no opening, and often containing an anatomical substance." [PATOC:MAH] +subset: value_slim +synonym: "sacular" EXACT [] +is_a: PATO:0002014 ! structure, cavities + +[Term] +id: PATO:0001988 +name: quadrangular +def: "A shape quality inhering in a bearer by virtue of the bearer's having four angles and four sides." [url:http\://www.oed.com/] +subset: value_slim +is_a: PATO:0002006 ! 2-D shape + +[Term] +id: PATO:0001989 +name: sinuous +def: "A curvature quality inhering in a bearer by virtue of the bearer's having many curves and turns." [PATOC:GVG] +subset: value_slim +synonym: "twisted" RELATED [] +is_a: PATO:0001591 ! curvature + +[Term] +id: PATO:0001990 +name: duration of disease +def: "A duration quality of a process inhering in a disease by virtue of the bearer's duration of an impairment of health or of a condition of abnormal functioning." [PATOC:GVG] +comment: MAH: I think this term should be obsoleted. Is it used? +is_a: PATO:0001309 ! duration + +[Term] +id: PATO:0001991 +name: immortal +def: "A quality inhering in a bearer by virtue of the bearer's disposition to being capable of indefinite growth or division." [answers.com:answers.com] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001992 +name: cellularity +def: "An organismal quality inhering in a bearer by virtue of the bearer's consisting cells." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0001993 +name: multicellular +def: "A cellularity quality inhering in a bearer by virtue of the bearer's consisting of more than one cell." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001992 ! cellularity +disjoint_from: PATO:0001994 ! unicellular + +[Term] +id: PATO:0001994 +name: unicellular +def: "A cellularity quality inhering in a bearer by virtue of the bearer's consisting of exactly one cell." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001992 ! cellularity + +[Term] +id: PATO:0001995 +name: organismal quality +def: "A quality that inheres in an entire organism or part of an organism." [PATOC:CJM] +is_a: PATO:0001241 ! physical object quality +disjoint_from: PATO:0002003 ! population quality + +[Term] +id: PATO:0001997 +name: decreased amount +alt_id: PATO:0000419 +alt_id: PATO:0000468 +def: "An amount which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "decreased" RELATED [] +synonym: "decreased number" EXACT [] +synonym: "present in fewer numbers in organism" EXACT [] +synonym: "reduced" RELATED [] +synonym: "subnumerary" RELATED [] +is_a: PATO:0000467 ! present +is_a: PATO:0002301 ! decreased quality +intersection_of: PATO:0000070 ! amount +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000470 ! increased amount + +[Term] +id: PATO:0001998 +name: conspicuousness +def: "A quality inhering in a bearer by virtue of its visibility." [PATOC:MAH] +comment: This term was created as a grouping term for the 2 terms "conspicuous" and "inconspicuous". However, it is not clear if these terms should even remain in PATO. +is_a: PATO:0000068 ! qualitative + +[Term] +id: PATO:0001999 +name: lacks parts or has fewer parts of type +def: "The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type." [PATOC:CJM] +subset: relational_slim +synonym: "loss of" EXACT [] +is_a: PATO:0002083 ! altered number of + +[Term] +id: PATO:0002000 +name: lacks all parts of type +alt_id: PATO:0001557 +def: "A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity." [PATOC:CJM] +comment: Example: [E=organism Q=lacks_all_parts_of_type E2=Wing] - applies to an organism. A relational quality in which the bearer entity has no parts of the specified type. The bearer of this quality has_part = 0 of the indicated entity type, where a comparable organism usually has at least 1 part of the same type. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e lacks all parts of type X at time t, then there exists no instances x of X at t such that x part_of e that has no wings, where wings are normally present in that organism type. In OWL this is equivalent to a restriction on the OBO_REL:has_part relation with cardinality=0, i.e has_part 0 E2. +subset: relational_slim +synonym: "lacks all physical parts of type" EXACT [] +xref: OBO_REL:lacks_part +is_a: PATO:0001999 ! lacks parts or has fewer parts of type +relationship: reciprocal_of PATO:0000462 ! absent + +[Term] +id: PATO:0002001 +name: has fewer parts of type +alt_id: PATO:0001569 +def: "The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly." [PATOC:CJM] +comment: Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type. +subset: relational_slim +synonym: "decreased number of" EXACT [] +synonym: "has decreased number of" EXACT [] +synonym: "has fewer physical parts of type" EXACT [] +is_a: PATO:0001999 ! lacks parts or has fewer parts of type +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001999 ! lacks parts or has fewer parts of type +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002002 ! has extra parts of type + +[Term] +id: PATO:0002002 +name: has extra parts of type +alt_id: PATO:0001560 +def: "The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part." [PATOC:CJM] +comment: In polydactyly, the bearer of the quality is the hand, and the entity type being counted is 'finger'. In EQ syntax, E=hand, Q= E2=finger. +subset: relational_slim +synonym: "has extra parts of" EXACT [] +synonym: "has increased number of" EXACT [] +synonym: "having extra physical parts" EXACT [] +synonym: "having supernumerary physical parts" EXACT [] +synonym: "increased number of" EXACT [] +is_a: PATO:0002083 ! altered number of +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002083 ! altered number of +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002001 ! has fewer parts of type + +[Term] +id: PATO:0002003 +name: population quality +def: "A quality that inheres in an entire population or part of a population." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0002004 +name: obsolete surface shape +def: "A shape that inheres in a part of a surface. An object can have different surface shapes on different parts of its surface." [PATOC:CJM] +comment: Consider PATO:0001925 +subset: attribute_slim +is_obsolete: true + +[Term] +id: PATO:0002005 +name: concavity +def: "Surface shape that refers to the inward or outward curvature of the surface." [PATOC:MAH] +subset: attribute_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0002006 +name: 2-D shape +def: "A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity." [PATOC:CJM] +subset: attribute_slim +synonym: "2-D projection" RELATED [] +synonym: "cross-sectional" RELATED [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0002007 +name: convex 3-D shape +def: "A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave." [PATOC:CJM] +comment: Use this term or an is_a child of this term when the entire shape of the object is known. +subset: attribute_slim +xref: Image:http\://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png +is_a: PATO:0002266 ! 3-D shape +relationship: has_cross_section PATO:0002006 ! 2-D shape +relationship: is_opposite_of PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0002008 +name: concave 3-D shape +def: "A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave." [PATOC:CJM] +subset: attribute_slim +xref: Image:http\://en.wikipedia.org/wiki/Image\:Convex_polygon_illustration2.png +is_a: PATO:0002266 ! 3-D shape +relationship: has_part PATO:0001857 ! concave +relationship: is_opposite_of PATO:0002007 ! convex 3-D shape + +[Term] +id: PATO:0002009 +name: branchiness +def: "A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:MAH] +subset: attribute_slim +subset: cell_quality +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0002010 +name: looseness +def: "A texture quality inhering in a bearer by virtue of the bearer's bing full of small openings or gaps." [url:http\://www.wordreference.com/definition/loose] +subset: value_slim +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0002011 +name: neoplastic +def: "A structural quality which is held by a bearer when the latter's disposition the presence of abnormally proliferating masses of cells." [PATOC:MAH] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +synonym: "tumorous" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0002012 +name: coating +def: "A texture quality that exists through a liquid cover on the surface of the bearer." [Wikipedia:Wikipedia] +subset: value_slim +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0002013 +name: fasciculation +def: "A structural quality inhering in a bearer by virtue of whether the bearer forms a bundle of anatomical fibers, as of muscle or nerve." [answers.com:http\://www.answers.com/] +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0002014 +name: structure, cavities +def: "A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0002016 +name: magnitude +is_a: PATO:0000068 ! qualitative + +[Term] +id: PATO:0002017 +name: increased magnitude +synonym: "high magnitude" EXACT [] +is_a: PATO:0002016 ! magnitude +relationship: is_opposite_of PATO:0002018 ! decreased magnitude + +[Term] +id: PATO:0002018 +name: decreased magnitude +synonym: "low magnitude" EXACT [] +is_a: PATO:0002016 ! magnitude +relationship: is_opposite_of PATO:0002017 ! increased magnitude + +[Term] +id: PATO:0002019 +name: aplastic growth +def: "A growth quality of occurrent in which the growth of an organism, structure or group of organisms does not occur." [PATOC:MAH] +synonym: "agenesis" NARROW [] +is_a: PATO:0001433 ! growth quality of occurrent + +[Term] +id: PATO:0002020 +name: pale pink +def: "Pink color having high brightness and low saturation." [PATOC:GVG] +is_a: PATO:0000954 ! pink + +[Term] +id: PATO:0002021 +name: conical +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a cone (a 3-D shape with a round cross section that tapers)." [Wikipedia:http\://en.wikipedia.org/wiki/Cone_(geometry)] +subset: value_slim +synonym: "cone-shaped" EXACT [] +xref: Image:http\://upload.wikimedia.org/wikipedia/commons/d/d2/Cone_3d.png +is_a: PATO:0002007 ! convex 3-D shape + +[Term] +id: PATO:0002022 +name: villiform +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a minute projection (villus)." [PATOC:PEM] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0002023 +name: apical-basal polarity +def: "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an apical-basal axis." [PATOC:MAH] +subset: value_slim +is_a: PATO:0001769 ! positional polarity + +[Term] +id: PATO:0002024 +name: anterior-posterior polarity +def: "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the anterior-posterior axis." [PATOC:MAH] +subset: value_slim +synonym: "rostral-caudal polarity" EXACT [] +synonym: "superior-caudal polarity (human torso)" EXACT [] +is_a: PATO:0001769 ! positional polarity + +[Term] +id: PATO:0002025 +name: external angle +def: "A convex angle that is formed by one side of a polygon and a line extended from an adjacent side." [http://en.wikipedia.org/wiki/Internal_angle] +subset: relational_slim +subset: value_slim +is_a: PATO:0001053 ! convex angle to + +[Term] +id: PATO:0002026 +name: non-progressive +def: "A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time." [PATOC:GVG] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0001818 ! progressive +created_by: george gkoutos +creation_date: 2008-12-18T12:49:19Z + +[Term] +id: PATO:0002027 +name: osmolality +def: "A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per kilogram of solvent." [Wikipedia:http\://en.wikipedia.org/wiki/Osmolarity] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0000033 ! concentration of +created_by: george +creation_date: 2009-01-27T10:53:11Z + +[Term] +id: PATO:0002028 +name: decreased osmolality +def: "An osmolality which is relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "low osmolality" EXACT [] +is_a: PATO:0002027 ! osmolality +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002027 ! osmolality +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002029 ! increased osmolality +created_by: george +creation_date: 2009-01-27T10:55:33Z + +[Term] +id: PATO:0002029 +name: increased osmolality +def: "An osmolality which is relatively high." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "high osmolality" EXACT [] +is_a: PATO:0002027 ! osmolality +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002027 ! osmolality +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002028 ! decreased osmolality +created_by: george +creation_date: 2009-01-27T10:56:19Z + +[Term] +id: PATO:0002030 +name: specificity to +def: "A molecular quality that inheres in a molecular entity by virtue of whether the bearer exhibits the ability of a probe to react precisely with a specific target molecule." [PATOC:mc] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0002182 ! molecular quality +created_by: george +creation_date: 2009-01-27T11:13:52Z + +[Term] +id: PATO:0002031 +name: upturned +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved or tilted such that the tip points upwards." [PATOC:cjm] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: george +creation_date: 2009-01-27T11:23:45Z + +[Term] +id: PATO:0002032 +name: forward scatter +def: "A reflectivity quality inhering in light by virtue of the bearer's scattering occurring at small angle to the incident beam." [PATOC:mc] +subset: attribute_slim +is_a: PATO:0001294 ! radiation reflective quality +created_by: george +creation_date: 2009-01-27T11:38:49Z + +[Term] +id: PATO:0002033 +name: side scatter +def: "A reflective quality that is the light scattering occurring at wide angle (around 90 degrees) to the incident beam." [PATOC:mc] +subset: attribute_slim +is_a: PATO:0001294 ! radiation reflective quality +created_by: george +creation_date: 2009-01-27T11:39:36Z + +[Term] +id: PATO:0002034 +name: undivided +def: "A shape quality inhering in a bearer by virtue of the bearer's being unseparated into parts or divisions." [PATOC:GVG] +subset: value_slim +synonym: "unseparated" RELATED [] +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2009-01-27T11:53:46Z + +[Term] +id: PATO:0002035 +name: ipsilateral to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being on the same side in relation to another structure." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "ipsilateral" EXACT [] +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2009-02-01T02:04:11Z + +[Term] +id: PATO:0002036 +name: axial to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located towards the central axis of the organism or an extremity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2009-02-01T02:06:20Z + +[Term] +id: PATO:0002037 +name: degeneration +def: "A structural quality inhering in a bearer by virtue of the bearer exhibiting deterioration of its structure." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-02-03T11:13:19Z + +[Term] +id: PATO:0002038 +name: non-degenerate +def: "A structural quality inhering in a bearer whose structure which does not deteriorate." [PATOC:GVG] +subset: value_slim +synonym: "not degenerate" EXACT [] +is_a: PATO:0002037 ! degeneration +relationship: is_opposite_of PATO:0000639 ! degenerate +created_by: george +creation_date: 2009-02-03T11:14:54Z + +[Term] +id: PATO:0002039 +name: biconcave +def: "A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001857 ! concave +relationship: is_opposite_of PATO:0002040 ! biconvex + +[Term] +id: PATO:0002040 +name: biconvex +def: "A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface." [thefreedictionary:http\://www.thefreedictionary.com/biconvexity] +subset: value_slim +xref: Image:http\://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx +is_a: PATO:0001355 ! convex +relationship: is_opposite_of PATO:0002039 ! biconcave + +[Term] +id: PATO:0002041 +name: anterior-posterior diameter +def: "A diameter that is along the anterior-posterior axis." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001334 ! diameter + +[Term] +id: PATO:0002042 +name: decreased anterior-posterior diameter +def: "An anterior-posterior diameter quality which is relatively small." [PATOC:GVG] +subset: value_slim +synonym: "low anterior-posterior diameter" EXACT [] +is_a: PATO:0001715 ! decreased diameter +is_a: PATO:0002041 ! anterior-posterior diameter +intersection_of: PATO:0002041 ! anterior-posterior diameter +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002043 ! increased anterior-posterior diameter + +[Term] +id: PATO:0002043 +name: increased anterior-posterior diameter +def: "An anterior-posterior diameter quality which is relatively large." [PATOC:GVG] +subset: value_slim +synonym: "high anterior-posterior diameter" EXACT [] +is_a: PATO:0001714 ! increased diameter +is_a: PATO:0002041 ! anterior-posterior diameter +intersection_of: PATO:0002041 ! anterior-posterior diameter +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002042 ! decreased anterior-posterior diameter + +[Term] +id: PATO:0002044 +name: trapezoid +def: "A shape quality inhering in a bearer by virtue of the bearer's being a quadrilateral with two parallel sides." [PATOC:GVG] +subset: value_slim +synonym: "trapezoidal" EXACT [] +is_a: PATO:0001988 ! quadrangular + +[Term] +id: PATO:0002045 +name: dendritic +def: "A branched quality inhering in a bearer by virtue of the bearer's having smaller branches arising from larger branches. Resembling a tree in branching structure." [PATOC:cvs] +subset: value_slim +synonym: "dendriform" EXACT [] +synonym: "dendroid" EXACT [] +synonym: "dendroidal" EXACT [] +is_a: PATO:0000402 ! branched +created_by: george +creation_date: 2009-02-15T08:11:41Z + +[Term] +id: PATO:0002046 +name: abaxial to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being away from or on the opposite side of the central axis." [medical-dictionary:http\://medical-dictionary.thefreedictionary.com/abaxial] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george gkoutos +creation_date: 2009-03-03T04:16:11Z + +[Term] +id: PATO:0002047 +name: adaxial to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located on the side nearest to the axis of an organ or organism." [thefreedictionary:http\://www.thefreedictionary.com/adaxial] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george gkoutos +creation_date: 2009-03-03T04:22:28Z + +[Term] +id: PATO:0002048 +name: mosaicism +def: "An organismal quality inhering in a bearer by virtue of the bearer's having two or more cell populations that differ in genetic makeup. This situation can affect any type of cell, including blood cells, gametes (egg and sperm cells), and skin." [Medline:http\://www.nlm.nih.gov/medlineplus] +subset: attribute_slim +synonym: "heterogeneity" RELATED [] +is_a: PATO:0001995 ! organismal quality +created_by: george gkoutos +creation_date: 2009-03-03T04:30:52Z + +[Term] +id: PATO:0002049 +name: lateral and rotional curvature +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis and towards the side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001787 ! rotational curvature +created_by: George Gkoutos +creation_date: 2009-03-13T12:36:14Z + +[Term] +id: PATO:0002050 +name: normal amount +def: "An amount which normal." [PATOC:GVG] +synonym: "present in normal numbers in organism" EXACT [] +is_a: PATO:0000467 ! present +relationship: reciprocal_of PATO:0001905 ! has normal numbers of parts of type +created_by: george +creation_date: 2009-03-20T11:16:22Z + +[Term] +id: PATO:0002051 +name: increased occurrence +def: "An occurrence which is relatively high." [PATOC:GVG] +synonym: "increased incidence" EXACT [] +is_a: PATO:0000057 ! occurrence +is_a: PATO:0002304 ! increased process quality +intersection_of: PATO:0000057 ! occurrence +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002052 ! decreased occurrence +created_by: George Gkoutos +creation_date: 2009-03-26T11:10:11Z + +[Term] +id: PATO:0002052 +name: decreased occurrence +def: "An occurrence which is relatively low." [PATOC:GVG] +synonym: "decreased incidence" EXACT [] +is_a: PATO:0000057 ! occurrence +is_a: PATO:0002302 ! decreased process quality +intersection_of: PATO:0000057 ! occurrence +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002051 ! increased occurrence +created_by: George Gkoutos +creation_date: 2009-03-26T11:12:35Z + +[Term] +id: PATO:0002053 +name: dorso-ventrally flattened +def: "A quality inhering in a bearer by virtue of the bearer's being flattened along dorso-ventral axis." [PATOC:MSP] +subset: value_slim +is_a: PATO:0002254 ! flattened +created_by: George Gkoutos +creation_date: 2009-03-26T03:02:38Z + +[Term] +id: PATO:0002054 +name: laterally compressed +def: "A quality inhering in a bearer by virtue of the bearer's being flattened along transverse axis." [PATOC:msp] +subset: value_slim +synonym: "laterally flattened" EXACT [] +synonym: "transversely flattened" RELATED [] +is_a: PATO:0002254 ! flattened +created_by: George Gkoutos +creation_date: 2009-03-26T03:03:37Z + +[Term] +id: PATO:0002055 +name: increased fragility +def: "A fragility which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001362 ! fragile +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001362 ! fragile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002056 ! decreased fragility +created_by: George Gkoutos +creation_date: 2009-03-26T04:01:37Z + +[Term] +id: PATO:0002056 +name: decreased fragility +def: "A fragility which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001362 ! fragile +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001362 ! fragile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002055 ! increased fragility +created_by: George Gkoutos +creation_date: 2009-03-26T04:02:14Z + +[Term] +id: PATO:0002057 +name: increased area +def: "An area which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000586 ! increased size +is_a: PATO:0001323 ! area +intersection_of: PATO:0001323 ! area +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002058 ! decreased area +created_by: George Gkoutos +creation_date: 2009-03-30T04:11:43Z + +[Term] +id: PATO:0002058 +name: decreased area +def: "An area which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000587 ! decreased size +is_a: PATO:0001323 ! area +intersection_of: PATO:0001323 ! area +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002057 ! increased area +created_by: George Gkoutos +creation_date: 2009-03-30T04:12:11Z + +[Term] +id: PATO:0002059 +name: emmision wavelength +def: "The specific wavelength of light emitted by a fluorescent molecule, such as a labelled probe, upon absorption of light at the (higher) excitation wavelength." [web:http\://www.expertglossary.com/] +subset: attribute_slim +is_a: PATO:0001299 ! radiation emitting quality +created_by: George Gkoutos +creation_date: 2009-05-27T02:25:33Z + +[Term] +id: PATO:0002060 +name: absorption wavelength +def: "The specific wavelength of radiation that can be retained by a bearer." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001293 ! absorption quality +created_by: George Gkoutos +creation_date: 2009-05-27T02:33:32Z + +[Term] +id: PATO:0002062 +name: physical quality of a process +subset: attribute_slim +is_a: PATO:0001236 ! process quality +created_by: george +creation_date: 2009-06-05T09:16:46Z + +[Term] +id: PATO:0002063 +name: columnar +def: "A shape inhering in a bearer by virtue of the bearer's being elongated and cylindrical." [PATOC:me] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2009-07-01T01:44:06Z + +[Term] +id: PATO:0002064 +name: fenestrated +def: "A structure quality inhering in a bearer by virtue of the bearer's delimited by a surface with holes." [PATOC:me] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: George Gkoutos +creation_date: 2009-07-01T01:46:53Z + +[Term] +id: PATO:0002065 +name: star shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's being arranged like rays or radii; radiating from a common center." [PATOC:me] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "stellate" EXACT [] +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2009-07-01T01:48:19Z + +[Term] +id: PATO:0002066 +name: crystal configuration +def: "A solid configuration inhering in a material entity by virtue of its constituent atoms, molecules, or ions being arranged in an orderly repeating pattern extending in all three spatial dimensions." [Wikipedia:http\://en.wikipedia.org/wiki/Crystal] +subset: value_slim +is_a: PATO:0001736 ! solid configuration +created_by: George Gkoutos +creation_date: 2009-07-01T01:50:40Z + +[Term] +id: PATO:0002067 +name: stratification +def: "A spatial pattern inhering in a bearer by virtue of the bearer's layered configuration." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000060 ! spatial pattern +created_by: George Gkoutos +creation_date: 2009-07-01T02:30:45Z + +[Term] +id: PATO:0002068 +name: stratified +def: "A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002067 ! stratification +relationship: is_opposite_of PATO:0002069 ! unstratified +created_by: George Gkoutos +creation_date: 2009-07-01T02:31:53Z + +[Term] +id: PATO:0002069 +name: unstratified +def: "A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002067 ! stratification +relationship: is_opposite_of PATO:0002068 ! stratified +created_by: George Gkoutos +creation_date: 2009-07-01T02:33:41Z + +[Term] +id: PATO:0002070 +name: affinity +def: "A molecular quality that arises from the molecular attraction exerted between two atoms or compounds." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2009-09-18T01:16:16Z + +[Term] +id: PATO:0002071 +name: increased affinity +def: "An affinity which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002070 ! affinity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002072 ! decreased affinity +created_by: George Gkoutos +creation_date: 2009-09-18T01:29:42Z + +[Term] +id: PATO:0002072 +name: decreased affinity +def: "An affinity which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002070 ! affinity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002071 ! increased affinity +created_by: George Gkoutos +creation_date: 2009-09-18T01:30:11Z + +[Term] +id: PATO:0002073 +name: avidity +def: "A molecular quality that arises from the synergistic strength of bond affinities between multiple bond interactions." [Wikipedia:Wikipedia] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2009-09-18T01:41:44Z + +[Term] +id: PATO:0002074 +name: increased avidity +def: "An avidity which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002073 ! avidity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002073 ! avidity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002075 ! decreased avidity +created_by: George Gkoutos +creation_date: 2009-09-18T01:45:56Z + +[Term] +id: PATO:0002075 +name: decreased avidity +def: "An avidity which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002073 ! avidity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002073 ! avidity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002074 ! increased avidity +created_by: George Gkoutos +creation_date: 2009-09-18T01:45:59Z + +[Term] +id: PATO:0002076 +name: movement behavioral quality +def: "A behavioral quality inhering in a bearer by virtue of the bearer's movement." [PATOC:GVG] +subset: attribute_slim +synonym: "movement behavioural quality" EXACT [] +is_a: PATO:0000186 ! behavioral quality +created_by: George Gkoutos +creation_date: 2009-09-18T02:04:48Z + +[Term] +id: PATO:0002077 +name: stacked +def: "A spatial quality inhering in a bearer by virtue of the bearer's being positioned with multiple entities of the same type above and below." [PATOC:CJM] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: George Gkoutos +creation_date: 2009-09-18T02:11:35Z + +[Term] +id: PATO:0002078 +name: hollow +def: "A quality inhering in a bearer by virtue of the bearer's having an empty space or cavity within." [url:http\://www.merriam-webster.com/dictionary/hollow] +subset: value_slim +is_a: PATO:0002014 ! structure, cavities +created_by: George Gkoutos +creation_date: 2009-09-18T02:19:20Z + +[Term] +id: PATO:0002080 +name: broken into two pieces +def: "A broken quality inhering in a bearer by virtue of the bearer's being seperated into two contiguous wholes." [PATOC:CJM] +subset: value_slim +is_a: PATO:0001444 ! broken +created_by: George Gkoutos +creation_date: 2009-09-21T10:18:11Z + +[Term] +id: PATO:0002081 +name: shattered +def: "A broken quality inhering in a bearer by virtue of the bearer's being broken into multiple contiguous wholes." [PATOC:GJM] +subset: value_slim +is_a: PATO:0001444 ! broken +created_by: George Gkoutos +creation_date: 2009-09-21T10:18:51Z + +[Term] +id: PATO:0002082 +name: partially broken +def: "A broken quality inhering in a bearer by virtue of the bearer's being still one contiguous whole but structurally damaged such that in danger of become two or more." [PATOC:CJM] +subset: value_slim +is_a: PATO:0001444 ! broken +created_by: George Gkoutos +creation_date: 2009-09-21T10:20:06Z + +[Term] +id: PATO:0002083 +name: altered number of +def: "Having extra or fewer parts." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0001555 ! has number of +created_by: George Gkoutos +creation_date: 2009-09-21T10:41:58Z + +[Term] +id: PATO:0002084 +name: obsolete post-mortem +def: "The period after death of the organism." [thefreedictionary:thefreedictionary] +comment: Terms were requested by the OBI consortium but it was later decided that the term was not reflecting a quality rather what it might be refered to as a "conferred quality". +subset: value_slim +is_obsolete: true +created_by: George Gkoutos +creation_date: 2009-09-25T11:29:21Z + +[Term] +id: PATO:0002085 +name: obsolete pre-mortem +def: "The period before death of the organism." [merriam-webster:merriam-webster] +comment: Terms were requested by the OBI consortium but it was later decided that the term was not reflecting a quality rather what it might be refered to as a "conferred quality". +subset: value_slim +is_obsolete: true +created_by: George Gkoutos +creation_date: 2009-09-25T11:31:13Z + +[Term] +id: PATO:0002087 +name: bullet-shaped +def: "A quality inhering in a bearer by virtue of the bearer's being short and wide and tapered distally." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape +created_by: George Gkoutos +creation_date: 2009-09-30T09:53:43Z + +[Term] +id: PATO:0002088 +name: monocystic +def: "A structure quality inhering in a bearer by virtue of the bearer's body consisting of one sac." [mondofacto:mondofacto] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001673 ! cystic +created_by: George Gkoutos +creation_date: 2009-10-01T03:00:20Z + +[Term] +id: PATO:0002089 +name: polycystic +def: "A structure quality inhering in a bearer by virtue of the bearer's body containing more than one cyst - formations of an epithelium bounded cavity not associated with neoplasia." [PATOC:GVG] +subset: value_slim +synonym: "multicystic" EXACT [] +is_a: PATO:0001673 ! cystic +created_by: George Gkoutos +creation_date: 2009-10-01T03:02:54Z + +[Term] +id: PATO:0002090 +name: adenomatous +def: "A morphology quality inhering in a tumour by virtue of the bearer's exhbiting the morphological characteristics of a glandular epithelial cell." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000051 ! morphology +created_by: george +creation_date: 2009-10-05T11:25:52Z + +[Term] +id: PATO:0002091 +name: subacute +def: "A quality of a single process inhering in a bearer by virtue of the bearer's having an onset and time course between acute and chronic." [PATOC:GVG] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001309 ! duration +created_by: george +creation_date: 2009-10-05T11:31:35Z + +[Term] +id: PATO:0002092 +name: anaplastic +def: "A morphology quality inhering in a neoplastic cell by virtue of the bearer's exhibiting breakdown of cell-cell interaction maintaining tissue architecture, proliferative dysregulation and bizarre modification to nucleus size and shape." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000051 ! morphology +created_by: george +creation_date: 2009-10-05T11:45:53Z + +[Term] +id: PATO:0002093 +name: ballooning +def: "A volume quality inhering in a degenerating cell by virtue of the bearer's exhibiting an increase in volume associated with cytoplasmic abnormalities." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000595 ! increased volume +created_by: george +creation_date: 2009-10-05T12:01:13Z + +[Term] +id: PATO:0002094 +name: basophilic +def: "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for basic dyes under specific ph conditions." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +created_by: george +creation_date: 2009-10-05T12:05:23Z + +[Term] +id: PATO:0002095 +name: obsolete neoplasm disposition +def: "A disposition inhering in a tumour to progress or fail to progress during it's life time." [PATOC:GVG] +subset: attribute_slim +is_obsolete: true +created_by: george +creation_date: 2009-10-05T12:15:02Z + +[Term] +id: PATO:0002096 +name: neoplastic, non-malignant +def: "A disposition inhering in a tumour by virtue of the bearer's disposition not to progress, invade surrounding tissues or metastasize." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +synonym: "benign" RELATED [] +is_a: PATO:0002011 ! neoplastic +disjoint_from: PATO:0002097 ! neoplastic, malignant +disjoint_from: PATO:0002098 ! neoplastic, metastatic +disjoint_from: PATO:0002129 ! neoplastic, invasive +created_by: george +creation_date: 2009-10-05T12:47:14Z + +[Term] +id: PATO:0002097 +name: neoplastic, malignant +def: "A disposition inhering in a tumour by virtue of the bearer's disposition to progress, invade surrounding tissues or metastasize." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0002011 ! neoplastic +disjoint_from: PATO:0002132 ! neoplastic, non-invasive +created_by: george +creation_date: 2009-10-05T12:50:22Z + +[Term] +id: PATO:0002098 +name: neoplastic, metastatic +def: "A disposition inhering in a tumour by virtue of the bearer's disposition to spread and invade distant tissues." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0002011 ! neoplastic +disjoint_from: PATO:0002132 ! neoplastic, non-invasive +created_by: george +creation_date: 2009-10-05T12:54:48Z + +[Term] +id: PATO:0002099 +name: differentiated +def: "A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency +relationship: is_opposite_of PATO:0002100 ! undifferentiated +created_by: george +creation_date: 2009-10-05T12:58:54Z + +[Term] +id: PATO:0002100 +name: undifferentiated +def: "A cellular quality inhering in a bearer by virtue of having not yet acquired a special structure of function." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency +relationship: is_opposite_of PATO:0002099 ! differentiated +created_by: george +creation_date: 2009-10-05T12:59:21Z + +[Term] +id: PATO:0002101 +name: metaplastic +def: "A cellular quality inhering in a bearer by virtue of having changed from one fully differentiated state into another." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "trans-differentiated" RELATED [] +is_a: PATO:0001397 ! cellular potency +created_by: george +creation_date: 2009-10-05T01:09:09Z + +[Term] +id: PATO:0002102 +name: proliferative +def: "A cellular quality inhering in a cell that arises by virtue of whether the bearer exhibits the ability to grow and proliferate in number through cell division." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001396 ! cellular quality +created_by: george +creation_date: 2009-10-05T01:16:31Z + +[Term] +id: PATO:0002103 +name: infiltrative +def: "A structural quality inhering in a bearer by virtue of the bearer's penetrating or permeating another substance or area." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "infiltrating" EXACT [] +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-10-05T01:27:56Z + +[Term] +id: PATO:0002104 +name: inflamed +def: "A compositional quality inhering in an bearer by virtue of the bearer's infiltration by leukocytes, local edema and accumulation of plasma proteins." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-05T01:37:35Z + +[Term] +id: PATO:0002105 +name: hemorrhagic +def: "A structural quality inhering in a bearer by virtue of the bearer's exhibiting excessive discharge of blood from the blood vessels." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-10-05T01:55:53Z + +[Term] +id: PATO:0002106 +name: poorly differentiated +def: "A cellular quality inhering in a bearer by virtue of its lacking most of the cellular characteristics which would allow it to be fully differentiated." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002099 ! differentiated +created_by: george +creation_date: 2009-10-05T02:53:43Z + +[Term] +id: PATO:0002107 +name: peripheral +def: "A positional quality inhering in a bearer by virtue of the bearer's being at the edge or boundary of a related entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2009-10-05T02:58:16Z + +[Term] +id: PATO:0002108 +name: papillary +def: "A quality inhering in a bearer by virtue of the bearer's resembling small nipple like projection." [PATO:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000623 ! exserted +created_by: george +creation_date: 2009-10-05T03:04:52Z + +[Term] +id: PATO:0002109 +name: caseous +def: "A structural quality inhering in a bearer by virtue of the bearer's resembling cheese." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "cheese-like" EXACT [] +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-10-05T03:09:27Z + +[Term] +id: PATO:0002110 +name: well differentiated +def: "A cellular quality inhering in a bearer by virtue of its having most of the cellular characteristics of the tissue of origin." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002099 ! differentiated +created_by: george +creation_date: 2009-10-05T03:26:29Z + +[Term] +id: PATO:0002111 +name: moderately well differentiated +def: "A cellular quality inhering in a bearer by virtue of its lacking few of the cellular characteristics which would allow it to be fully differentiated." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +is_a: PATO:0002099 ! differentiated +created_by: george +creation_date: 2009-10-05T03:29:42Z + +[Term] +id: PATO:0002112 +name: perforate +alt_id: PATO:0000649 +def: "A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "permeable" RELATED [] +synonym: "pierced" RELATED [] +is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0001821 ! imperforate +created_by: george +creation_date: 2009-10-05T03:37:05Z + +[Term] +id: PATO:0002113 +name: cribriform +def: "Perforated like a sieve." [merriam-webster:merriam-webster] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002112 ! perforate +created_by: george +creation_date: 2009-10-05T03:38:22Z + +[Term] +id: PATO:0002114 +name: fatty +def: "A composition quality inhering in a bearer by virtue of the bearer's containing excess lipid." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-05T03:47:15Z + +[Term] +id: PATO:0002115 +name: fibrinoid +def: "A composition quality inhering in a bearer by virtue of the bearer's containing fibrin." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-05T04:01:01Z + +[Term] +id: PATO:0002116 +name: fibrinopurulent +def: "A composition quality inhering in exudate by virtue of the bearer's containing fibrin." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-05T04:03:03Z + +[Term] +id: PATO:0002117 +name: glandular +def: "A morphology quality inhering in a bearer by virtue of the bearer's exhbiting the morphological characteristics of a gland." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000051 ! morphology +created_by: george +creation_date: 2009-10-05T04:11:30Z + +[Term] +id: PATO:0002118 +name: multiple +def: "A quality inhering in a bearer by virtue of the bearer's being present in more than two copies." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000470 ! increased amount +created_by: george +creation_date: 2009-10-06T03:28:38Z + +[Term] +id: PATO:0002119 +name: hydropic +def: "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of intracellular fluid." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-06T03:45:58Z + +[Term] +id: PATO:0002120 +name: suppurative +def: "A quality inhering a bearer by virtue of the bearer's ability to generate pus." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "purulent" RELATED [] +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-06T03:56:00Z + +[Term] +id: PATO:0002121 +name: trabecular +def: "A spatial pattern inhering in a bearer by virtue of the bearer's structureresembling an irregular meshwork with cross-linking struts." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000330 ! irregular spatial pattern +created_by: george +creation_date: 2009-10-06T03:57:55Z + +[Term] +id: PATO:0002122 +name: mixed +def: "A composition quality inhering in a bearer by virtue of the bearer's being composed of more than one identifiable entities." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-06T04:29:17Z + +[Term] +id: PATO:0002123 +name: minimal +def: "Being smallest in amount, extent or degree." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000467 ! present +created_by: george +creation_date: 2009-10-06T04:33:48Z + +[Term] +id: PATO:0002124 +name: laminar +def: "A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-10-06T04:37:14Z + +[Term] +id: PATO:0002125 +name: nodular +def: "A quality inhering in a bearer by virtue of the bearer's consisting a knot-like mass." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-10-06T04:40:06Z + +[Term] +id: PATO:0002126 +name: osseous +def: "A quality inhering in a bearer by virtue of the bearer's containing bone." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "bony" EXACT [] +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-06T04:42:11Z + +[Term] +id: PATO:0002127 +name: scirrhous +def: "A hardness quality of being rigid and resistant to pressure and fibrous." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000386 ! hard +created_by: george +creation_date: 2009-10-06T04:49:30Z + +[Term] +id: PATO:0002128 +name: serous +def: "A quality inhering a bearer by virtue of the bearer's containing or resembling serum." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-06T04:51:16Z + +[Term] +id: PATO:0002129 +name: neoplastic, invasive +def: "A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0002011 ! neoplastic +disjoint_from: PATO:0002132 ! neoplastic, non-invasive +created_by: george +creation_date: 2009-10-06T05:02:45Z + +[Term] +id: PATO:0002130 +name: neoplastic, deeply invasive +def: "A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues to a large extend." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002129 ! neoplastic, invasive +created_by: george +creation_date: 2009-10-06T05:03:13Z + +[Term] +id: PATO:0002131 +name: abduction +def: "A displaced angular placement quality inhering in a body part by virtue of the bearer's movement away from the medial plane of the body." [wikipedia:wikipedia] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0002168 ! displaced to +created_by: george +creation_date: 2009-10-13T06:38:53Z + +[Term] +id: PATO:0002132 +name: neoplastic, non-invasive +def: "A disposition inhering in a tumour by virtue of the bearer's disposition not to invade surrounding tissues." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0002011 ! neoplastic +created_by: george +creation_date: 2009-10-06T05:04:18Z + +[Term] +id: PATO:0002133 +name: adduction +def: "A displaced angular placement quality inhering in a body part by virtue of the bearer's movement closer the medial plane of the body." [wikipedia:wikipedia] +comment: This term is also used in reference to the operation of the muscle in anatomy or musculature. +subset: attribute_slim +subset: relational_slim +is_a: PATO:0002168 ! displaced to +created_by: george +creation_date: 2009-10-13T06:41:39Z + +[Term] +id: PATO:0002134 +name: fibrillary +def: "A composition quaity inhering in a bearer by virtue of the bearer's containing of or pertaining to fibrils, or nanoscale fibers." [wikipedia:wikipedia] +subset: value_slim +synonym: "fibrillate" EXACT [] +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-26T12:53:47Z + +[Term] +id: PATO:0002135 +name: delayed closure +def: "A duration quality of a process inhering in a bearer by virtue of the bearer's delay to complete the closure of the opening of an anatomical entity." [PATOC:GVG] +is_a: PATO:0000502 ! delayed +created_by: george +creation_date: 2009-10-26T01:03:17Z + +[Term] +id: PATO:0002136 +name: radiopacity +def: "A quality inhering in a bearer by virtue of the bearer's relative inability of electromagnetism to pass through a particular material, particularly X-rays." [Wikipedia:Wikipedia] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001291 ! electromagnetic (EM) radiation quality +created_by: george +creation_date: 2009-10-26T01:14:38Z + +[Term] +id: PATO:0002137 +name: radiopaque +def: "A readiopacity quality inhering in a bearer by virtue of the bearer's prevention of the passage of electromagnetic radiation." [Wikipedia:Wikipedia] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002136 ! radiopacity +created_by: george +creation_date: 2009-10-26T01:16:08Z + +[Term] +id: PATO:0002138 +name: edibility +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be eaten." [PATOC:VO] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "edibleness" EXACT [] +is_a: PATO:0001018 ! physical quality +created_by: george +creation_date: 2009-10-26T01:20:24Z + +[Term] +id: PATO:0002139 +name: edible +def: "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as food." [PATOC:VO] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002138 ! edibility +disjoint_from: PATO:0002140 ! inedible +relationship: is_opposite_of PATO:0002140 ! inedible +created_by: george +creation_date: 2009-10-26T01:21:34Z + +[Term] +id: PATO:0002140 +name: inedible +def: "A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food." [PATOC:VO] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002138 ! edibility +relationship: is_opposite_of PATO:0002139 ! edible +created_by: george +creation_date: 2009-10-26T01:22:27Z + +[Term] +id: PATO:0002141 +name: irregular density +def: "A density quality which lacks pattern." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001019 ! mass density +created_by: george +creation_date: 2009-10-28T01:57:53Z + +[Term] +id: PATO:0002142 +name: bracket +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2009-10-28T03:14:54Z + +[Term] +id: PATO:0002143 +name: sloped downward +subset: value_slim +is_a: PATO:0001481 ! sloped +created_by: george +creation_date: 2009-10-30T02:18:39Z + +[Term] +id: PATO:0002144 +name: increased radiopacity +def: "A radiopacity that is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002136 ! radiopacity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002136 ! radiopacity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002145 ! decreased radiopacity +created_by: george +creation_date: 2009-10-30T03:30:39Z + +[Term] +id: PATO:0002145 +name: decreased radiopacity +def: "A radiopacity that is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002136 ! radiopacity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002136 ! radiopacity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002144 ! increased radiopacity +created_by: george +creation_date: 2009-10-30T03:31:31Z + +[Term] +id: PATO:0002146 +name: virulence +def: "A quality inhering in a bearer by virtue of the severity of infectious disease caused by the bearer in a target organism." [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0001-8941-3984] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001995 ! organismal quality +created_by: george +creation_date: 2009-10-30T05:04:06Z + +[Term] +id: PATO:0002147 +name: reduced virulence +def: "A virulence that is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "attenuated" EXACT [] +is_a: PATO:0002146 ! virulence +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002146 ! virulence +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002148 ! increased virulence +created_by: george +creation_date: 2009-10-30T05:05:02Z + +[Term] +id: PATO:0002148 +name: increased virulence +def: "A virulence that is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002146 ! virulence +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002146 ! virulence +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002147 ! reduced virulence +created_by: george +creation_date: 2009-10-30T05:13:10Z + +[Term] +id: PATO:0002149 +name: ivory +def: "A quality inhering in a bearer by virtue of the bearer exhibiting increased density resulting in exhibiting increased degree of radiopacity (in X-rays)." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001788 ! increased mass density +created_by: george +creation_date: 2009-11-03T02:59:08Z + +[Term] +id: PATO:0002150 +name: splayed caudal +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the part of the body from which the tail arises." [PATOC:GVG] +subset: value_slim +synonym: "splayed inferior (human torso)" EXACT [] +synonym: "splayed posterior" EXACT [] +is_a: PATO:0001785 ! splayed +created_by: george +creation_date: 2009-11-06T01:13:10Z + +[Term] +id: PATO:0002151 +name: splayed dorsal +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the back or upper surface of an organism." [PATOC:GVG] +subset: value_slim +synonym: "splayed posterior (human torso)" RELATED [] +is_a: PATO:0001785 ! splayed +created_by: george +creation_date: 2009-11-06T01:14:09Z + +[Term] +id: PATO:0002152 +name: splayed lateral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001785 ! splayed +created_by: george +creation_date: 2009-11-06T01:14:22Z + +[Term] +id: PATO:0002153 +name: splayed rostral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the front of an organism." [PATOC:GVG] +subset: value_slim +synonym: "splayed anterior" EXACT [] +synonym: "splayed superior (human torso)" EXACT [] +is_a: PATO:0001785 ! splayed +created_by: george +creation_date: 2009-11-06T01:14:31Z + +[Term] +id: PATO:0002154 +name: splayed ventral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the abdomen of an organism." [PATOC:GVG] +subset: value_slim +synonym: "splayed anterior (human torso)" EXACT [] +synonym: "splayed inferior (human head)" EXACT [] +is_a: PATO:0001785 ! splayed +created_by: george +creation_date: 2009-11-06T01:14:42Z + +[Term] +id: PATO:0002155 +name: medially rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the middle of an organism." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "internally rotated" EXACT [] +is_a: PATO:0001599 ! rotated +created_by: george +creation_date: 2009-11-06T02:23:28Z + +[Term] +id: PATO:0002156 +name: laterally rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the side of an organism." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "externally rotated" EXACT [] +is_a: PATO:0001599 ! rotated +created_by: george +creation_date: 2009-11-06T02:25:10Z + +[Term] +id: PATO:0002157 +name: partially dislocated +alt_id: PATO:0002160 +def: "A positional quality inhering in a bearer by virtue of the bearer's being slightly out of its usual or proper place, or position." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "partial dislocated towards" EXACT [] +synonym: "subluxation" EXACT [] +synonym: "suluxated towards" EXACT [] +is_a: PATO:0001852 ! dislocated +created_by: george +creation_date: 2009-11-06T03:34:15Z + +[Term] +id: PATO:0002161 +name: bicornuate +def: "Having two horns or horn-shaped branches." [mondofacto:mondofacto] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: george +creation_date: 2009-11-11T02:37:52Z + +[Term] +id: PATO:0002162 +name: high-arched +def: "A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch of an increased apical height." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001594 ! arched +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001594 ! arched +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +created_by: george +creation_date: 2009-11-26T02:34:06Z + +[Term] +id: PATO:0002163 +name: herniated into +def: "A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it into the surface or boundary of another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001645 ! protruding into +created_by: george +creation_date: 2009-11-26T04:50:43Z + +[Term] +id: PATO:0002164 +name: curved medial +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the middle." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: george +creation_date: 2009-12-02T10:06:21Z + +[Term] +id: PATO:0002165 +name: drooping +def: "To bent or hang downwards." [thefreedictionary.:thefreedictionary.] +subset: value_slim +synonym: "sagging" EXACT [] +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2009-12-02T03:32:55Z + +[Term] +id: PATO:0002166 +name: premature closure +def: "A duration quality of a process inhering in a bearer by virtue of the bearer's premature completion of the closure of the opening of an anatomical entity." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000694 ! premature +created_by: george +creation_date: 2009-12-02T04:10:10Z + +[Term] +id: PATO:0002167 +name: herniated out of +def: "A protruding quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded out of the surface or boundary of another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001646 ! protruding out of +created_by: george +creation_date: 2009-12-02T05:19:32Z + +[Term] +id: PATO:0002168 +name: displaced to +def: "An angular placement quality inhering in a bearer by virtue of the bearer being changed in position in relation to another entity." [PATOC:GVG] +subset: relational_slim +synonym: "mislocalised to" RELATED [] +is_a: PATO:0000133 ! orientation +created_by: george +creation_date: 2010-01-14T04:45:18Z + +[Term] +id: PATO:0002169 +name: split medially +def: "A shape quality inhering in a bearer by virtue of the bearer's being split along the median axis." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001786 ! split +created_by: george +creation_date: 2010-02-03T04:37:15Z + +[Term] +id: PATO:0002170 +name: split laterally +def: "A shape quality inhering in a bearer by virtue of the bearer's being split asymmetrically on one side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001786 ! split +created_by: george +creation_date: 2010-02-03T04:37:40Z + +[Term] +id: PATO:0002171 +name: split bilaterally +def: "A shape quality inhering in a bearer by virtue of the bearer's being split on two side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001786 ! split +created_by: george +creation_date: 2010-02-03T04:37:53Z + +[Term] +id: PATO:0002172 +name: split radially +def: "A shape quality inhering in a bearer by virtue of the bearer's being split along the radial axis." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001786 ! split +created_by: george +creation_date: 2010-02-03T04:42:35Z + +[Term] +id: PATO:0002173 +name: misaligned towards +def: "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning towards an additional entity." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0001654 ! misaligned with +created_by: George Gkoutos +creation_date: 2010-02-22T03:18:17Z + +[Term] +id: PATO:0002174 +name: misaligned away from +def: "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning away from an additional entity." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0001654 ! misaligned with +created_by: George Gkoutos +creation_date: 2010-02-22T03:18:48Z + +[Term] +id: PATO:0002175 +name: deviation +def: "A spatial quality inhering in a bearer by virtue of the bearer's changed direction of position towards another entity." [PATO:GVG] +subset: attribute_slim +is_a: PATO:0000060 ! spatial pattern +created_by: George Gkoutos +creation_date: 2010-02-25T09:14:42Z + +[Term] +id: PATO:0002176 +name: deviation towards the lateral side +def: "A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002175 ! deviation +created_by: George Gkoutos +creation_date: 2010-02-25T09:16:04Z + +[Term] +id: PATO:0002177 +name: deviation towards the medial side +def: "A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the middle." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002175 ! deviation +created_by: George Gkoutos +creation_date: 2010-02-25T09:16:56Z + +[Term] +id: PATO:0002178 +name: mislocalised radially +def: "A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position around a central point or axis." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000628 ! mislocalised +created_by: George Gkoutos +creation_date: 2010-02-25T11:24:58Z + +[Term] +id: PATO:0002179 +name: mislocalised proximally +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards to point of attachment or origin." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000628 ! mislocalised +created_by: George Gkoutos +creation_date: 2010-02-25T12:34:48Z + +[Term] +id: PATO:0002180 +name: straight +def: "A shape quality inhering in a bearer by virtue of the bearer's being free of curves, bends, or angles." [merriam-webster:merriam-webster] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2010-02-28T08:54:59Z + +[Term] +id: PATO:0002181 +name: displaced +def: "A positional quality inhering in a bearer by virtue the bearer's being changed in position." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000140 ! position +created_by: George Gkoutos +creation_date: 2010-03-01T02:56:33Z + +[Term] +id: PATO:0002182 +name: molecular quality +alt_id: PATO:0002061 +def: "A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc." [PATOC:GVG] +synonym: "relational molecular quality" EXACT [] +is_a: PATO:0001241 ! physical object quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:18:15Z + +[Term] +id: PATO:0002183 +name: cyclicity +def: "A molecular quality that inheres in a molecular entity by virtue of whether that there is a presence of cycles in the connection of the atoms within the molecular entity." [PATOC:JH] +subset: value_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:19:46Z + +[Term] +id: PATO:0002184 +name: cyclic cyclicity +def: "Cyclic cyclicity inheres in a molecule when the atoms of the molecule do contain at least one cycle in the atom-atom connection paths (through bonds)." [PATOC:JH] +subset: value_slim +is_a: PATO:0002183 ! cyclicity +created_by: George Gkoutos +creation_date: 2010-03-10T03:20:54Z + +[Term] +id: PATO:0002185 +name: acyclic cyclicity +def: "Acyclic cyclicity inheres in a molecule when the atoms within the molecule do not contain at least one cycle in the atom-atom connection paths (through the bonds)." [PATOC:JH] +subset: value_slim +is_a: PATO:0002183 ! cyclicity +created_by: George Gkoutos +creation_date: 2010-03-10T03:21:39Z + +[Term] +id: PATO:0002186 +name: polarity +def: "A molecular quality that inheres in a molecular entity by virtue of whether or not the molecular entity has a separation of electric charge which leads to the molecule having an electric dipole." [PATOC:JH] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:22:04Z + +[Term] +id: PATO:0002187 +name: polar polarity +def: "Polar polarity is a quality that inheres in a molecular entity when the molecular entity is polar, i.e. does possess an electric dipole." [PATOC:JH] +subset: value_slim +is_a: PATO:0002186 ! polarity +disjoint_from: PATO:0002188 ! nonpolar polarity +created_by: George Gkoutos +creation_date: 2010-03-10T03:22:49Z + +[Term] +id: PATO:0002188 +name: nonpolar polarity +def: "A molecular quality which inheres in a molecular entity when the molecular entity does not possess an electrical dipole." [PATOC:JH] +subset: value_slim +is_a: PATO:0002186 ! polarity +created_by: George Gkoutos +creation_date: 2010-03-10T03:24:01Z + +[Term] +id: PATO:0002189 +name: electric polarizability +def: "The ease of distortion of the electron cloud of a molecular entity by an electric field." [PATOC:JH] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:24:47Z + +[Term] +id: PATO:0002190 +name: aromaticity +def: "A molecular quality that inheres in a molecular entity by virtue of the presence of a conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone." [PATOC:JH] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:25:27Z + +[Term] +id: PATO:0002191 +name: aromatic +def: "A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone." [PATOC:JH] +subset: value_slim +is_a: PATO:0002190 ! aromaticity +disjoint_from: PATO:0002192 ! non-aromatic +relationship: is_opposite_of PATO:0002192 ! non-aromatic +created_by: George Gkoutos +creation_date: 2010-03-10T03:25:59Z + +[Term] +id: PATO:0002192 +name: non-aromatic +def: "A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic." [PATOC:JH] +subset: value_slim +is_a: PATO:0002190 ! aromaticity +relationship: is_opposite_of PATO:0002191 ! aromatic +created_by: George Gkoutos +creation_date: 2010-03-10T03:26:41Z + +[Term] +id: PATO:0002193 +name: electric charge +def: "A molecular quality that inheres in a molecular entity by virtue of the overall electric charge of the molecule, which is due to a comparison between the total number of electrons and the total number of protons." [PATOC:JH] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:28:54Z + +[Term] +id: PATO:0002194 +name: neutral charge +def: "A quality which inheres in a molecular entity by virtue of the molecular entity possessing the same amount of electrons overall as protons, thus having an overall neutral charge." [PATOC:JH] +subset: value_slim +is_a: PATO:0002193 ! electric charge +disjoint_from: PATO:0002195 ! positive charge +disjoint_from: PATO:0002196 ! negative charge +created_by: George Gkoutos +creation_date: 2010-03-10T03:29:37Z + +[Term] +id: PATO:0002195 +name: positive charge +def: "A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge." [PATOC:JH] +subset: value_slim +is_a: PATO:0002193 ! electric charge +disjoint_from: PATO:0002196 ! negative charge +relationship: is_opposite_of PATO:0002196 ! negative charge +created_by: George Gkoutos +creation_date: 2010-03-10T03:30:06Z + +[Term] +id: PATO:0002196 +name: negative charge +def: "A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge." [PATOC:JH] +subset: value_slim +is_a: PATO:0002193 ! electric charge +relationship: is_opposite_of PATO:0002195 ! positive charge +created_by: George Gkoutos +creation_date: 2010-03-10T03:30:39Z + +[Term] +id: PATO:0002197 +name: electronegativity +def: "A quality that describes the power of an atom to attract electrons to itself ." [PATOC:JH] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:31:15Z + +[Term] +id: PATO:0002198 +name: quality of a substance +def: "A quality inhering in a bearer by virtue of its constitution." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality +created_by: George Gkoutos +creation_date: 2010-03-15T04:35:27Z + +[Term] +id: PATO:0002199 +name: meltability +def: "A quality which inheres in a substance by virtue of the ease with which the substance can be changed from a solid to a liquid state especially by the application of heat." [PATOC:JH] +subset: attribute_slim +is_a: PATO:0002198 ! quality of a substance +created_by: George Gkoutos +creation_date: 2010-03-15T04:36:57Z + +[Term] +id: PATO:0002200 +name: vaporizability +def: "A quality which inheres in a substance by virtue of the ease with which the substance can be changed into a gaseous state." [PATOC:JH] +subset: attribute_slim +is_a: PATO:0002198 ! quality of a substance +created_by: George Gkoutos +creation_date: 2010-03-15T04:38:02Z + +[Term] +id: PATO:0002201 +name: handedness +def: "A behavioral quality inhering ina bearer by virtue of the bearer's unequal distribution of fine motor skill between its left and right hands or feet." [birnlex:2178] +comment: Adapted from Wikipedia and the birnlex term that is dbxref'd. Added on behalf of OBI at March 2010 workshop. +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000186 ! behavioral quality +created_by: haendel +creation_date: 2010-03-22T05:48:33Z + +[Term] +id: PATO:0002202 +name: left handedness +def: "Handedness where the organism preferentially uses the left hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot." [birnlex:2038] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002201 ! handedness +created_by: haendel +creation_date: 2010-03-22T05:49:06Z + +[Term] +id: PATO:0002203 +name: right handedness +def: "Handedness where the organism preferentially uses the right hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot." [birnlex:2184] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002201 ! handedness +created_by: haendel +creation_date: 2010-03-22T05:49:19Z + +[Term] +id: PATO:0002204 +name: ambidextrous handedness +def: "Handedness where the organism exhibits no overall dominance in the use of right or left hand or foot in the performance of tasks that require one hand or foot or a dominant hand or foot." [birnlex:2042] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002201 ! handedness +created_by: haendel +creation_date: 2010-03-22T05:49:30Z + +[Term] +id: PATO:0002205 +name: capacitance +def: "A quality inhering in a bearer by virtue of the bearer's ability to hold an electrical charge." [Wikipedia:Wikipedia] +comment: Capacitance is also a measure of the amount of electrical energy stored (or separated) for a given electric potential. +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-25T09:42:51Z + +[Term] +id: PATO:0002206 +name: neonatal +def: "A maturity quality inhering to a bearer by virtue of the bearer's being at the point or short after birth." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000261 ! maturity +created_by: George Gkoutos +creation_date: 2010-05-07T12:11:47Z + +[Term] +id: PATO:0002207 +name: insertion depth +def: "A quality that is the distance between the end of the inserted object and the surface of the object into which it penetrates." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0000040 ! distance +created_by: George Gkoutos +creation_date: 2010-05-14T11:40:24Z + +[Term] +id: PATO:0002208 +name: spoon-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a spoon." [thefreedictionary:http\://www.thefreedictionary.com/spoon-shaped] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: george +creation_date: 2010-07-08T12:13:12Z + +[Term] +id: PATO:0002209 +name: incisiform +def: "A shape quality inhering in a bearer by virtue of the bearer's having the shape of an incisor tooth." [thefreedictionary:http\://www.thefreedictionary.com/incisiform] +subset: value_slim +is_a: PATO:0001419 ! sharp +created_by: george +creation_date: 2010-07-08T12:16:04Z + +[Term] +id: PATO:0002210 +name: bulbous +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a teardrop." [PATOC:GVG] +subset: value_slim +synonym: "bulb-shaped" EXACT [] +synonym: "bulblike" EXACT [] +synonym: "swollen" RELATED [] +is_a: PATO:0001865 ! spheroid +created_by: george +creation_date: 2010-07-08T12:19:08Z + +[Term] +id: PATO:0002211 +name: recurved +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or inward." [merriam-webster:http\://www.merriam-webster.com/dictionary/recurved] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: george +creation_date: 2010-07-08T12:26:45Z + +[Term] +id: PATO:0002212 +name: slender +def: "A shape quality inhering in a bearer by virtue of the bearer's being small or narrow in circumference or width in proportion to length or height." [merriam-webster:http\://www.merriam-webster.com/dictionary/slender] +subset: value_slim +synonym: "gracile" RELATED [] +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2010-07-08T01:32:26Z + +[Term] +id: PATO:0002213 +name: obclavate +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: george +creation_date: 2010-07-08T01:47:09Z + +[Term] +id: PATO:0002214 +name: bilobed +def: "A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having two lobes." [thefreedictionary:http\://www.thefreedictionary.com/bilobed] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001979 ! lobed +created_by: george +creation_date: 2010-07-08T01:54:08Z + +[Term] +id: PATO:0002215 +name: falciform +def: "A shape quality inhering in a bearer by virtue of the bearer's having the shape of a scythe or sickle." [merriam-webster:http\://www.merriam-webster.com/dictionary/falciform] +subset: value_slim +synonym: "falcate" EXACT [] +synonym: "hooked" EXACT [] +synonym: "scythe-shaped" EXACT [] +synonym: "sickle-shaped" EXACT [] +synonym: "unciform" EXACT [] +synonym: "uncinate" EXACT [] +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2010-07-08T01:57:46Z + +[Term] +id: PATO:0002216 +name: ubiquinated +def: "A molecular quality that pertains to the post-translational modification of a protein by the covalent attachment of one or more ubiquitin monomer." [neurolex:http\://neurolex.org/] +subset: value_slim +synonym: "Ubiquitylation" RELATED [] +is_a: PATO:0002182 ! molecular quality +created_by: george +creation_date: 2010-07-08T02:00:37Z + +[Term] +id: PATO:0002217 +name: nitrated +def: "A molecular quality inhering in a bearer by virtue of the bearer's being combined, or impregnated, with nitric acid, or some of its compounds." [neurolex:http\://neurolex.org/wiki/Category\:Nitrated_Molecular_Quality] +subset: value_slim +is_a: PATO:0002182 ! molecular quality +created_by: george +creation_date: 2010-07-08T02:04:03Z + +[Term] +id: PATO:0002218 +name: demyelinated +def: "A quality inhering in a bearer by virtue of the bearer's loss of myelin sheath." [thefreedictionary:http\://www.thefreedictionary.com/demyelinated] +comment: For example loss of myelin sheath from a normally myelinated axon or dendrite. +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2010-07-08T02:08:06Z + +[Term] +id: PATO:0002219 +name: fan-shaped +def: "A quality inhering in a bearer that is shaped in the form of a fan." [thefreedictionary:http\://www.thefreedictionary.com/fan-shaped] +subset: value_slim +synonym: "fan-like" EXACT [] +is_a: PATO:0002006 ! 2-D shape +created_by: george +creation_date: 2010-07-09T01:43:42Z + +[Term] +id: PATO:0002220 +name: phosphorylated +def: "A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group." [wikipedia:en.wikipedia.org/wiki/Phosphorylated] +subset: value_slim +is_a: PATO:0002262 ! phosphorylation +disjoint_from: PATO:0002263 ! dephosphorylated +relationship: is_opposite_of PATO:0002263 ! dephosphorylated +created_by: george +creation_date: 2010-07-09T01:50:14Z + +[Term] +id: PATO:0002221 +name: increased phosphorylation +def: "A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups." [Wikipedia:http\://en.wiktionary.org/wiki/hyperphosphorylated] +subset: value_slim +synonym: "hyperphosphorylated" EXACT [] +is_a: PATO:0002220 ! phosphorylated +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002220 ! phosphorylated +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002222 ! decreased phosphorylation +created_by: george +creation_date: 2010-07-09T01:51:52Z + +[Term] +id: PATO:0002222 +name: decreased phosphorylation +def: "A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully." [Wikipedia:http\://en.wiktionary.org/wiki/hypophosphorylated] +subset: value_slim +synonym: "hypophosporylated" EXACT [] +is_a: PATO:0002220 ! phosphorylated +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002220 ! phosphorylated +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002221 ! increased phosphorylation +created_by: george +creation_date: 2010-07-09T01:54:22Z + +[Term] +id: PATO:0002223 +name: oxidized +def: "A quality inhering in a bearer by virtue of the bearer's having reacted with oxygen, or been modified by oxidation (the reaction in which the atoms of an element lose electrons and the valence of the element increases)." [Wikipedia:http\://en.wiktionary.org/wiki/oxidized] +subset: value_slim +is_a: PATO:0002182 ! molecular quality +created_by: george +creation_date: 2010-07-09T01:59:35Z + +[Term] +id: PATO:0002224 +name: V-shaped +def: "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter V." [PATOC:JE] +subset: value_slim +is_a: PATO:0001977 ! angular +created_by: george +creation_date: 2010-07-13T04:12:13Z + +[Term] +id: PATO:0002225 +name: L-shaped +def: "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter L." [PATOC:JE] +subset: value_slim +is_a: PATO:0001977 ! angular +created_by: george +creation_date: 2010-07-13T04:14:59Z + +[Term] +id: PATO:0002226 +name: subcylindrical +def: "A cylindrical shape quality inhering in a bearer by virtue of the bearer's being imperfectly cylindrical or approximately cylindrical." [url:http\://www.thefreedictionary.com/Subcylindrical] +subset: value_slim +is_a: PATO:0001873 ! cylindrical +created_by: george +creation_date: 2010-07-13T04:22:30Z + +[Term] +id: PATO:0002227 +name: cup-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a cup." [url:http\://www.thefreedictionary.com/cup-shaped] +subset: value_slim +synonym: "cup-like" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape +created_by: george +creation_date: 2010-07-13T04:29:32Z + +[Term] +id: PATO:0002228 +name: acuminate +def: "A tapered shape quality inhering in a bearer by virtue of the bearer's tapering gradually to a sharp point." [url:http\://www.thefreedictionary.com/acuminate] +subset: value_slim +is_a: PATO:0001500 ! tapered +created_by: george +creation_date: 2010-07-15T09:03:18Z + +[Term] +id: PATO:0002229 +name: subrectangular +def: "A quadrangular shape quality inhering in a bearer by virtue of the bearer's being approximately rectangular." [url:http\://dictionary.reference.com/browse/subrectangular?qsrc=2446&o=100074] +subset: value_slim +is_a: PATO:0001988 ! quadrangular +created_by: george +creation_date: 2010-07-19T12:18:57Z + +[Term] +id: PATO:0002230 +name: subtriangular +def: "A triangular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, triangular." [url:http\://www.thefreedictionary.com/Subtriangular] +subset: value_slim +is_a: PATO:0001875 ! triangular +created_by: george +creation_date: 2010-07-19T12:20:59Z + +[Term] +id: PATO:0002231 +name: multifid +def: "A split shape quality inhering in a bearer by virtue of the bearer's having or being divided into many lobes or similar segments." [url:http\://www.thefreedictionary.com/multifid] +subset: value_slim +is_a: PATO:0001786 ! split +created_by: george +creation_date: 2010-07-19T12:23:02Z + +[Term] +id: PATO:0002232 +name: semicircular +def: "A 2-D shape quality inhering in a bearer by virtue of the bearer's having shape or form of half a circle." [url:http\://www.thefreedictionary.com/semicircle] +subset: value_slim +synonym: "half circle" EXACT [] +synonym: "semicircle" EXACT [] +is_a: PATO:0002006 ! 2-D shape +created_by: george +creation_date: 2010-07-19T01:02:27Z + +[Term] +id: PATO:0002233 +name: far from +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located far (not close to) in space in relation to another entity." [PATOC:PM] +subset: relational_slim +subset: value_slim +synonym: "distant from" EXACT [] +synonym: "remote from" EXACT [] +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2010-07-19T02:43:53Z + +[Term] +id: PATO:0002234 +name: emarginate +def: "A notched shape quality inhering in a bearer by virtue of the bearer's having a notched tip or edge." [url:http\://www.thefreedictionary.com/emarginate] +subset: value_slim +is_a: PATO:0001495 ! notched +created_by: george +creation_date: 2010-07-19T04:25:58Z + +[Term] +id: PATO:0002235 +name: blade-like +def: "A tapered shape quality inhering in a bearer by virtue of the bearer's being flat, slender, and tapering to a point." [PATOC:JE] +subset: value_slim +synonym: "blade-shaped" EXACT [] +synonym: "ensiform" EXACT [] +synonym: "sword-like" EXACT [] +synonym: "sword-shaped" EXACT [] +is_a: PATO:0001500 ! tapered +created_by: george +creation_date: 2010-07-19T04:29:05Z + +[Term] +id: PATO:0002236 +name: aliform +def: "Shape quality inhering in a bearer by virtue of the bearer's being shaped like a wing." [url:http\://www.thefreedictionary.com/aliform] +subset: value_slim +synonym: "wing-shaped" EXACT [] +is_a: PATO:0002006 ! 2-D shape +created_by: george +creation_date: 2010-07-23T02:19:14Z + +[Term] +id: PATO:0002237 +name: retrorse +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or downward." [url:http\://www.thefreedictionary.com/retrorse] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: george +creation_date: 2010-07-23T02:22:09Z + +[Term] +id: PATO:0002238 +name: antrorse +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved forward or upward." [url:http\://www.thefreedictionary.com/antrorse] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: george +creation_date: 2010-07-23T02:22:56Z + +[Term] +id: PATO:0002239 +name: hourglass-shaped +def: "A concave 3-D shape that inheres in the bearer by virtue of the bearer's nearly) symmetric shape wide at its ends and narrow in the middle, resembling the figure of number 8." [url:http\://en.wikipedia.org/wiki/Hourglass-shaped] +subset: value_slim +synonym: "figure 8 shaped" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape +created_by: george +creation_date: 2010-07-23T02:25:24Z + +[Term] +id: PATO:0002240 +name: teardrop-shaped +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop." [url:wordnetweb.princeton.edu/perl/webwn] +subset: value_slim +synonym: "drop shaped" EXACT [] +is_a: PATO:0002007 ! convex 3-D shape +created_by: george +creation_date: 2010-07-23T02:31:11Z + +[Term] +id: PATO:0002241 +name: trilobed +def: "A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having three lobes." [url:http\://www.thefreedictionary.com/trilobed] +subset: value_slim +is_a: PATO:0001979 ! lobed +created_by: george +creation_date: 2010-07-28T12:57:46Z + +[Term] +id: PATO:0002242 +name: velocity +def: "A physical quality inhering in a bearer by virtue of the bearer's rate of change of the position." [url:http\://en.wikipedia.org/wiki/Velocity] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001906 ! movement quality +created_by: george +creation_date: 2010-07-28T02:52:48Z + +[Term] +id: PATO:0002243 +name: fluid flow rate +def: "A physical quality inhering in a fluid (liquid or gas) by virtue of the amount of fluid which passes through a given surface per unit time." [url:http\://en.wikipedia.org/wiki/Volumetric_flow_rate] +subset: attribute_slim +subset: scalar_slim +synonym: "volume flow rate" EXACT [] +synonym: "volumetric flow rate" EXACT [] +is_a: PATO:0001574 ! flow rate +created_by: george +creation_date: 2010-07-28T03:00:20Z + +[Term] +id: PATO:0002244 +name: mass flow rate +def: "A flow rate quality inhering in a substance by virtue of the mass of substance which passes through a given surface per unit time." [url:http\://en.wikipedia.org/wiki/Mass_flow_rate] +subset: attribute_slim +is_a: PATO:0001574 ! flow rate +created_by: george +creation_date: 2010-07-28T03:02:03Z + +[Term] +id: PATO:0002245 +name: increased force +def: "A force which relative high." [PATOC:GVG] +subset: value_slim +synonym: "increased force amplitude" EXACT [] +is_a: PATO:0001035 ! force +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001035 ! force +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002246 ! decreased force +created_by: george +creation_date: 2010-08-04T11:12:20Z + +[Term] +id: PATO:0002246 +name: decreased force +def: "A force which is relative low." [PATOC:GVG] +subset: value_slim +synonym: "decreased force amplitude" EXACT [] +is_a: PATO:0001035 ! force +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001035 ! force +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002245 ! increased force +created_by: george +creation_date: 2010-08-04T11:13:13Z + +[Term] +id: PATO:0002247 +name: degree of pigmentation +def: "A quality inhering in a bearer by virtue of the bearer's having or lacking of substances produced by living organisms that have a color resulting from selective color absorption." [url:http\://en.wikipedia.org/wiki/Biological_pigment] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000141 ! structure +relationship: correlates_with PATO:0000014 ! color +created_by: george +creation_date: 2010-08-09T04:14:00Z + +[Term] +id: PATO:0002248 +name: pigmented +def: "A degree of pigmentation quality inhering in a bearer by virtue of the bearer's having substances produced by living organisms that have a color resulting from selective color absorption." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002247 ! degree of pigmentation +disjoint_from: PATO:0002249 ! unpigmented +relationship: is_opposite_of PATO:0002249 ! unpigmented +created_by: george +creation_date: 2010-08-09T04:16:49Z + +[Term] +id: PATO:0002249 +name: unpigmented +def: "A degree of pigmentation quality inhering in a bearer by virtue of the bearer's lacking substances produced by living organisms that have a color resulting from selective color absorption." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "depigmented" EXACT [] +is_a: PATO:0002247 ! degree of pigmentation +relationship: is_opposite_of PATO:0002248 ! pigmented +created_by: george +creation_date: 2010-08-09T04:17:04Z + +[Term] +id: PATO:0002250 +name: increased pigmentation +def: "A degree of pigmentation quality that is relatively high." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "hyperpigmented" EXACT [] +is_a: PATO:0002248 ! pigmented +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002248 ! pigmented +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002251 ! decreased pigmentation +created_by: george +creation_date: 2010-08-09T04:17:19Z + +[Term] +id: PATO:0002251 +name: decreased pigmentation +def: "A degree of pigmentation quality that is relative low." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "hypopigmented" EXACT [] +is_a: PATO:0002248 ! pigmented +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002248 ! pigmented +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002250 ! increased pigmentation +created_by: george +creation_date: 2010-08-09T04:17:37Z + +[Term] +id: PATO:0002252 +name: antero-posteriorly flattened +def: "A quality inhering in a bearer by virtue of the bearer's being flattened along the antero-posterior axis." [PATOC:JC] +subset: value_slim +synonym: "antero-posteriorly compressed" EXACT [] +is_a: PATO:0002254 ! flattened +created_by: george +creation_date: 2010-08-16T03:57:42Z + +[Term] +id: PATO:0002253 +name: platelike +def: "A quality inhering in a bearer by virtue of the bearer's being roundish, flattish shape, possibly with a slightly angled edge." [PATOC:CVC] +subset: value_slim +synonym: "plate-like" EXACT [] +is_a: PATO:0000407 ! flat +created_by: george +creation_date: 2010-08-16T03:57:48Z + +[Term] +id: PATO:0002254 +name: flattened +def: "A quality inhering in a bearer by virtue of the bearer's surface becoming more extended in a plane." [PATOC:CVS] +comment: Becoming flat but not necessarily completely flat. +subset: value_slim +synonym: "compressed" RELATED [] +is_a: PATO:0001591 ! curvature +created_by: george +creation_date: 2010-08-16T03:59:34Z + +[Term] +id: PATO:0002255 +name: grooved +def: "Texture quality inhering in a bearer by virtue of the bearer's being marked with one or more channels." [PATOC:JE] +subset: value_slim +synonym: "channeled" RELATED [] +synonym: "creased" RELATED [] +is_a: PATO:0000150 ! texture +created_by: george +creation_date: 2010-09-01T10:27:48Z + +[Term] +id: PATO:0002256 +name: tricuspidate +def: "A cuscpidate quality inhering in a bearer by virtue of the bearer possessing three cusps." [PATOC:WD] +subset: value_slim +synonym: "tricuspid" EXACT [] +is_a: PATO:0002257 ! multicuspidate +created_by: george +creation_date: 2010-09-08T02:21:50Z + +[Term] +id: PATO:0002257 +name: multicuspidate +def: "A cuscpidate quality inhering in a bearer by virtue of the bearer possessing more than one cusp." [PATOC:WD] +subset: value_slim +is_a: PATO:0001973 ! cuspidate +created_by: george +creation_date: 2010-09-08T02:23:22Z + +[Term] +id: PATO:0002258 +name: pointed +def: "A shape quality inhering in a bearer by virtue of the bearer's having a point." [PATOC:http\://www.merriam-webster.com/dictionary/pointed] +subset: value_slim +is_a: PATO:0001419 ! sharp +created_by: george +creation_date: 2010-09-08T03:15:16Z + +[Term] +id: PATO:0002259 +name: adjacent to +alt_id: PATO:0001771 +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located near in space in relation to another entity." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "approaches" EXACT [] +synonym: "close to" EXACT [] +synonym: "near to" EXACT [] +synonym: "vicinity of" EXACT [] +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2010-09-08T03:20:06Z + +[Term] +id: PATO:0002260 +name: semi erect +def: "A quality inhering in a bearer by virtue of the bearer's being partially upright in position or posture." [PATOC:GVG] +synonym: "semi upright" EXACT [] +is_a: PATO:0000622 ! erect +created_by: george +creation_date: 2010-09-08T03:27:21Z + +[Term] +id: PATO:0002261 +name: located in +def: "A spatial quality inhering in a bearer by virtue of the bearer's location within another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2010-09-09T09:36:56Z + +[Term] +id: PATO:0002262 +name: phosphorylation +def: "A quality inhering in a protein or a molecule by virtue of the addition of a phosphate (PO4) group to the bearer." [url:http\://en.wikipedia.org/wiki/Phosphorylation] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: george +creation_date: 2010-09-16T08:57:56Z + +[Term] +id: PATO:0002263 +name: dephosphorylated +def: "A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group." [url:http\://en.wikipedia.org/wiki/Dephosphorylation] +subset: value_slim +is_a: PATO:0002262 ! phosphorylation +relationship: is_opposite_of PATO:0002220 ! phosphorylated +created_by: george +creation_date: 2010-09-16T09:04:21Z + +[Term] +id: PATO:0002264 +name: organization quality +def: "A structural quality inhering in a bearer by virtue of the bearer's being arranged in a systematic fashion." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2010-09-16T10:22:52Z + +[Term] +id: PATO:0002265 +name: behavioural activity +def: "A behavioral quality of a process inhering in a bearer by virtue of the bearer's disposition to exhibit marked activity." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000186 ! behavioral quality +created_by: george +creation_date: 2010-09-21T06:56:58Z + +[Term] +id: PATO:0002266 +name: 3-D shape +def: "A shape that inheres in a 3 dimensional entity." [PATOC:OREGON] +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2010-10-05T12:31:16Z + +[Term] +id: PATO:0002267 +name: edge shape +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2010-10-05T12:34:31Z + +[Term] +id: PATO:0002268 +name: centered +def: "A positional quality inhering in a bearer by virtue of the bearer's being located in a position equidistant from edges." [PATOC:OREGON] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2010-10-05T01:09:32Z + +[Term] +id: PATO:0002269 +name: accumulation +def: "A structural quality of the collection or massing of one physical object within another physical object." [PATOC:CVC] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +synonym: "pooled" RELATED [] +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2010-10-26T01:57:02Z + +[Term] +id: PATO:0002270 +name: increased accumulation +def: "An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "accumulated" EXACT [] +is_a: PATO:0002269 ! accumulation +relationship: is_opposite_of PATO:0002271 ! decreased accumulation +created_by: george +creation_date: 2010-10-26T02:00:20Z + +[Term] +id: PATO:0002271 +name: decreased accumulation +def: "An accumulation which is relative low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0002269 ! accumulation +relationship: is_opposite_of PATO:0002270 ! increased accumulation +created_by: george +creation_date: 2010-10-26T02:04:45Z + +[Term] +id: PATO:0002272 +name: parallel to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located at the same continuous distance relative to another object." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2010-10-26T02:07:42Z + +[Term] +id: PATO:0002273 +name: marbled +def: "Multicolored quality inhering in a bearer by virtue of the bearer's being colored with a variegated pattern resembling marble,." [url:http\://www.oed.com/] +subset: value_slim +is_a: PATO:0001533 ! multi-colored +created_by: george +creation_date: 2010-11-16T11:17:32Z + +[Term] +id: PATO:0002274 +name: mottled +def: "Multicolored quality inhering in a bearer by virtue of the bearer's being dappled with spots, patches, or blotches of different colors." [url:http\://www.oed.com/] +subset: value_slim +is_a: PATO:0001533 ! multi-colored +created_by: george +creation_date: 2010-11-16T11:22:57Z + +[Term] +id: PATO:0002275 +name: high contrast color pattern +def: "A color pattern quality inhering in a bearer by virtue of the bearer's color pattern in which light and dark colors (for example white and black) are codistributed to create a visual impression." [PATOC:WD] +subset: disposition_slim +is_a: PATO:0000019 ! color pattern +created_by: george +creation_date: 2010-11-16T11:24:15Z + +[Term] +id: PATO:0002276 +name: barred +def: "A color pattern inhering in a bearer by virtue of bearer's exhibiting vertical bars of one hue or degree of saturation crossing another." [PATOC:WD] +subset: value_slim +is_a: PATO:0001533 ! multi-colored +created_by: george +creation_date: 2010-11-16T11:30:40Z + +[Term] +id: PATO:0002277 +name: iridescent +def: "A quality of certain surfaces which appear to change colour as the angle of view changes." [url:http\://en.wikipedia.org/wiki/Iridescence] +is_a: PATO:0001615 ! variant color +created_by: george +creation_date: 2010-12-12T12:37:41Z + +[Term] +id: PATO:0002278 +name: articulated with +def: "A structural quality inhering in a bearer by virtue of the bearer's participating in a joint with another entity." [PATOC:WD] +subset: relational_slim +is_a: PATO:0001961 ! in contact with +created_by: george +creation_date: 2011-01-20T05:39:18Z + +[Term] +id: PATO:0002279 +name: tightly articulated with +def: "A structural quality inhering in a bearer by virtue of the bearer's being strongly articulated with another entity." [PATOC:WD] +subset: relational_slim +is_a: PATO:0002278 ! articulated with +created_by: george +creation_date: 2011-01-20T05:39:59Z + +[Term] +id: PATO:0002280 +name: broadly articulated with +def: "A structural quality inhering in a bearer by virtue of the bearer's possessing a broad surface in articulation with another entity." [PATOC:WD] +subset: relational_slim +is_a: PATO:0002278 ! articulated with +created_by: george +creation_date: 2011-01-20T05:40:29Z + +[Term] +id: PATO:0002281 +name: biscupidate +def: "A cuscpidate quality inhering in a bearer by virtue of the bearer possessing two cusps." [PATOC:GVG] +synonym: "bicuspid" EXACT [] +is_a: PATO:0002257 ! multicuspidate +created_by: george +creation_date: 2011-02-07T03:13:18Z + +[Term] +id: PATO:0002282 +name: increased mobility +def: "A mobility which is relative high." [PATO:GVG] +subset: value_slim +is_a: PATO:0000299 ! mobile +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000299 ! mobile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002283 ! decreased mobility +created_by: george +creation_date: 2011-03-09T09:16:03Z + +[Term] +id: PATO:0002283 +name: decreased mobility +def: "A mobility which is relative low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000299 ! mobile +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000299 ! mobile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002282 ! increased mobility +created_by: george +creation_date: 2011-03-09T09:16:47Z + +[Term] +id: PATO:0002284 +name: tension +def: "A physical quality that pertains by virtue of a pulling force that is directed away from the bearer and attempts to stretch or elongate the bearer." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality +created_by: george +creation_date: 2011-03-10T08:41:21Z + +[Term] +id: PATO:0002285 +name: increased branchiness +def: "Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:CVS] +subset: value_slim +is_a: PATO:0000402 ! branched +relationship: is_opposite_of PATO:0002286 ! decreased branchiness +created_by: george +creation_date: 2011-03-10T09:07:57Z + +[Term] +id: PATO:0002286 +name: decreased branchiness +def: "Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:CVS] +subset: value_slim +is_a: PATO:0000402 ! branched +relationship: is_opposite_of PATO:0002285 ! increased branchiness +created_by: george +creation_date: 2011-03-10T09:08:37Z + +[Term] +id: PATO:0002287 +name: increased elasticity +def: "An elasticity which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001171 ! elastic +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001171 ! elastic +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002288 ! decreased elasticity +created_by: George Gkoutos +creation_date: 2011-03-30T11:50:21Z + +[Term] +id: PATO:0002288 +name: decreased elasticity +def: "An elasticity which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001171 ! elastic +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001171 ! elastic +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002287 ! increased elasticity +created_by: George Gkoutos +creation_date: 2011-03-30T11:50:39Z + +[Term] +id: PATO:0002289 +name: setose +def: "A hairy quality inhering in a bearer by virtue of the bearer's being covered with setae." [ISBN:0913424137] +comment: Setose as a label is used extensively to describe insect phenotypes that have hairy-like appearances (i.e., they are covered in setae, not the hairs of mammals). A bristle is a type of seta. +subset: value_slim +is_a: PATO:0000454 ! hairy +created_by: George Gkoutos +creation_date: 2011-04-04T08:44:10Z + +[Term] +id: PATO:0002290 +name: aplastic/hypoplastic +is_a: PATO:0001241 ! physical object quality +created_by: George Gkoutos +creation_date: 2011-04-18T05:11:33Z + +[Term] +id: PATO:0002291 +name: agenesis +def: "Absence of a tissue or organ due to failure to develop." [PATO:GVG] +is_a: PATO:0000462 ! absent +created_by: George Gkoutos +creation_date: 2011-04-18T05:17:34Z + +[Term] +id: PATO:0002292 +name: transient +def: "A structural quality inhering in a bearer by virtue of the bearer's underlying structure being capable of change." [PATOC:WD] +comment: For example, structures undergoing endochondral ossification change in composition from cartilaginous to ossified. +synonym: "transient structure" EXACT [] +is_a: PATO:0000141 ! structure +disjoint_from: PATO:0002293 ! permanent +created_by: George Gkoutos +creation_date: 2011-05-03T03:01:59Z + +[Term] +id: PATO:0002293 +name: permanent +def: "A structural quality inhering in a bearer by virtue of the bearer's underlying structure not changing over time." [PATOC:WD] +synonym: "permanent structure" EXACT [] +is_a: PATO:0000141 ! structure +created_by: George Gkoutos +creation_date: 2011-05-03T03:03:50Z + +[Term] +id: PATO:0002294 +name: scrobiculate +def: "A texture that is uniformly covered in short, oblong, or trench-like depressions." [Book:Book] +is_a: PATO:0000150 ! texture +created_by: George Gkoutos +creation_date: 2011-05-03T03:12:47Z + +[Term] +id: PATO:0002295 +name: areolate +def: "A surface feature shape inhering in a surface by virtue of the bearer's being divided by ridge-like structures into a number of small, irregular spaces." [Book:Book] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape +created_by: George Gkoutos +creation_date: 2011-05-17T07:57:45Z + +[Term] +id: PATO:0002296 +name: foveate +def: "A texture quality inhering in a surface by virtue of the bearer's being marked by the presence of small, shallow, regular depressions called fovae." [Book:Book] +subset: value_slim +synonym: "foveolate" RELATED [] +synonym: "pitted" RELATED [] +is_a: PATO:0000150 ! texture +created_by: George Gkoutos +creation_date: 2011-05-17T07:59:30Z + +[Term] +id: PATO:0002297 +name: decreased cellular motility +def: "A cellular motility which is lower relative to the normal or average." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001488 ! cellular motility +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001488 ! cellular motility +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002298 ! increased cellular motility + +[Term] +id: PATO:0002298 +name: increased cellular motility +def: "A cellular motility which is higher relative to the normal or average." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001488 ! cellular motility +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001488 ! cellular motility +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002297 ! decreased cellular motility + +[Term] +id: PATO:0002299 +name: tubular +def: "A cylindrical shape that is hollow." [PATOC:GVG] +synonym: "tube like" EXACT [] +synonym: "tube-shaped" EXACT [] +synonym: "tubulate" EXACT [] +is_a: PATO:0001873 ! cylindrical +is_a: PATO:0002078 ! hollow +created_by: George Gkoutos +creation_date: 2011-06-08T06:33:50Z + +[Term] +id: PATO:0002300 +name: increased quality +def: "A quality that has a value that is increased compared to normal or average." [PATOC:GVG] +is_a: PATO:0000069 ! deviation(from_normal) +intersection_of: PATO:0000001 ! quality +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002301 ! decreased quality +created_by: George Gkoutos +creation_date: 2011-06-16T06:39:43Z + +[Term] +id: PATO:0002301 +name: decreased quality +def: "A quality that has a value that is decreased compared to normal or average." [PATOC:GVG] +is_a: PATO:0000069 ! deviation(from_normal) +intersection_of: PATO:0000001 ! quality +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002300 ! increased quality +created_by: George Gkoutos +creation_date: 2011-06-16T06:40:15Z + +[Term] +id: PATO:0002302 +name: decreased process quality +def: "A quality of a process that has a value that is decreased compared to normal or average." [PATOC:GVG] +is_a: PATO:0001236 ! process quality +is_a: PATO:0002301 ! decreased quality +intersection_of: PATO:0001236 ! process quality +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002304 ! increased process quality +created_by: George Gkoutos +creation_date: 2011-06-16T06:50:59Z + +[Term] +id: PATO:0002303 +name: decreased object quality +def: "A quality of an object that has a value that is decreased compared to normal or average." [PATOC:GVG] +is_a: PATO:0001241 ! physical object quality +is_a: PATO:0002301 ! decreased quality +intersection_of: PATO:0001241 ! physical object quality +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002305 ! increased object quality +created_by: George Gkoutos +creation_date: 2011-06-16T06:51:54Z + +[Term] +id: PATO:0002304 +name: increased process quality +def: "A quality of a process that has a value that is increased compared to normal or average." [PATOC:GVG] +is_a: PATO:0001236 ! process quality +is_a: PATO:0002300 ! increased quality +intersection_of: PATO:0001236 ! process quality +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002302 ! decreased process quality +created_by: George Gkoutos +creation_date: 2011-06-16T06:53:08Z + +[Term] +id: PATO:0002305 +name: increased object quality +def: "A quality of an object that has a value that is increased compared to normal or average." [PATOC:GVG] +is_a: PATO:0001241 ! physical object quality +is_a: PATO:0002300 ! increased quality +intersection_of: PATO:0001241 ! physical object quality +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002303 ! decreased object quality +created_by: George Gkoutos +creation_date: 2011-06-16T06:54:01Z + +[Term] +id: PATO:0002306 +name: equilateral triangular +def: "A triangular quality inhering in a bearer by virtue of the bearer's having all sides of the same length." [PATOC:JB] +subset: value_slim +is_a: PATO:0001875 ! triangular +disjoint_from: PATO:0002307 ! isosceles triangular +disjoint_from: PATO:0002308 ! scalene triangular +created_by: George Gkoutos +creation_date: 2011-06-27T11:22:50Z + +[Term] +id: PATO:0002307 +name: isosceles triangular +def: "A triangular quality inhering in a bearer by virtue of the bearer's having two sides have the same length." [PATOC:JB] +subset: scalar_slim +is_a: PATO:0001875 ! triangular +disjoint_from: PATO:0002308 ! scalene triangular +created_by: George Gkoutos +creation_date: 2011-06-27T11:23:52Z + +[Term] +id: PATO:0002308 +name: scalene triangular +def: "A triangular quality inhering in a bearer by virtue of the bearer's having all sides of unequal length." [PATOC:JB] +subset: value_slim +is_a: PATO:0001875 ! triangular +created_by: George Gkoutos +creation_date: 2011-06-27T11:24:24Z + +[Term] +id: PATO:0002309 +name: fiber shaped +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a by virtue of the bearer's exhibiting a consistently sized and approximately round cross-section along its length, which is many times larger than its diameter." [PATOC:DC] +comment: Note that a fiber shaped object may take any circuitous or straight path through space (think of a length of string or rope). +subset: value_slim +is_a: PATO:0002226 ! subcylindrical +created_by: George Gkoutos +creation_date: 2011-09-09T04:50:10Z + +[Term] +id: PATO:0002310 +name: robust +def: "A quality inhering in a bearer by virtue of the bearer's being strong, thick or sturdy." [PATOC:BF] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2011-09-20T06:23:31Z + +[Term] +id: PATO:0002311 +name: fimbriated +def: "Having a fringe or border of hairlike or fingerlike projections." [PATO:WS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2011-09-22T03:52:11Z + +[Term] +id: PATO:0002312 +name: segmented +def: "Consisting of segments or similar parts arranged in a longitudinal series." [OED:] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: George Gkoutos +creation_date: 2011-10-03T03:42:23Z + +[Term] +id: PATO:0002313 +name: telescopic +def: "Having or resembling the shape of a telescope." [PATOC:BF] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2011-10-03T03:49:26Z + +[Term] +id: PATO:0002314 +name: ligamentous +def: "Having the nature or characteristic of, a ligament; composed of the tissue proper to ligaments." [PATOC:BF] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: George Gkoutos +creation_date: 2011-10-03T03:57:39Z + +[Term] +id: PATO:0002315 +name: brush-like shape +def: "A shape quality inhering in a bearer by virtue of the bearer's resembling the end of a brush with a multitude of bristles." [PATOC:BF] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2011-10-03T03:59:59Z + +[Term] +id: PATO:0002316 +name: autogenous +def: "Being separate or discrete from other skeletal elements." [PATOC:WD] +subset: value_slim +synonym: "free" RELATED [] +is_a: PATO:0000141 ! structure +created_by: George Gkoutos +creation_date: 2011-10-03T04:17:08Z + +[Term] +id: PATO:0002317 +name: parallelogram +def: "A convex quadrilateral is a parallelogram if and only if any one of the following statements are true:\n1. Each diagonal divides the quadrilateral into two congruent triangles with the same orientation.\n2. The opposite sides are congruent in pairs.\n3. The diagonals bisect each other.\n4. The opposite angles are congruent in pairs.\n5. The sum of the squares of the sides equals the sum of the squares of the diagonals. (This is the parallelogram law)\n6.It possesses rotational symmetry.\n7.One pair of opposite sides are parallel and congruent.\n8.Two pairs of adjacent angles are supplementary." [wikipedia:Parallelogram] +subset: value_slim +is_a: PATO:0001988 ! quadrangular +created_by: George Gkoutos +creation_date: 2011-10-12T12:33:07Z + +[Term] +id: PATO:0002318 +name: superelliptic +def: "A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt" [wiktionary:superellipse] +synonym: "Lamé curve" EXACT [] +is_a: PATO:0002006 ! 2-D shape +created_by: George Gkoutos +creation_date: 2011-10-12T12:45:16Z + +[Term] +id: PATO:0002319 +name: squircle +def: "A shape with properties between those of a square and those of a circle." [wikipedia:Squircle] +subset: value_slim +is_a: PATO:0002318 ! superelliptic +created_by: George Gkoutos +creation_date: 2011-10-12T12:47:48Z + +[Term] +id: PATO:0002320 +name: diamond shaped +def: "A superelptic shape inhering in a bearer by virtue of the bearer's shape resembling a diamond." [PATO:WC] +subset: value_slim +is_a: PATO:0002318 ! superelliptic +created_by: George Gkoutos +creation_date: 2011-10-12T12:49:06Z + +[Term] +id: PATO:0002321 +name: hypoelliptic +is_a: PATO:0002318 ! superelliptic +relationship: is_opposite_of PATO:0002322 ! hyperelliptic +created_by: George Gkoutos +creation_date: 2011-10-12T12:50:59Z + +[Term] +id: PATO:0002322 +name: hyperelliptic +is_a: PATO:0002318 ! superelliptic +relationship: is_opposite_of PATO:0002321 ! hypoelliptic +created_by: George Gkoutos +creation_date: 2011-10-12T12:51:19Z + +[Term] +id: PATO:0002323 +name: temporal distribution quality +def: "A temporal distribution pattern of process occurrences within a regulation/reference process." [PATOC:LC] +subset: attribute_slim +is_a: PATO:0002062 ! physical quality of a process +created_by: George Gkoutos +creation_date: 2011-11-22T01:12:28Z + +[Term] +id: PATO:0002324 +name: offset quality +def: "The temporal relation between the end of the process with respect to a reference process." [PATOC:LC] +subset: attribute_slim +synonym: "completeness" RELATED [GOC:CJM] +synonym: "extent" RELATED [GOC:CJM] +is_a: PATO:0002323 ! temporal distribution quality +created_by: George Gkoutos +creation_date: 2011-11-23T11:46:00Z + +[Term] +id: PATO:0002325 +name: onset quality +def: "The temporal relation between the start of the process with respect to a reference process." [PATOC:LC] +subset: attribute_slim +synonym: "initiation" RELATED [] +is_a: PATO:0002323 ! temporal distribution quality +created_by: George Gkoutos +creation_date: 2011-11-23T11:47:34Z + +[Term] +id: PATO:0002326 +name: angle +def: "An orientation inhering in a bearer by virtue of the bearer's placement at an angle." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0000133 ! orientation +created_by: George Gkoutos +creation_date: 2011-11-23T12:06:09Z + +[Term] +id: PATO:0002327 +name: increased angle to +def: "An angle which is relatively high." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001475 ! increased position +is_a: PATO:0002326 ! angle +intersection_of: PATO:0002326 ! angle +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002328 ! decreased angle to +created_by: George Gkoutos +creation_date: 2011-11-23T12:06:38Z + +[Term] +id: PATO:0002328 +name: decreased angle to +def: "An angle which is relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001476 ! decreased position +is_a: PATO:0002326 ! angle +intersection_of: PATO:0002326 ! angle +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002327 ! increased angle to +created_by: George Gkoutos +creation_date: 2011-11-23T12:06:54Z + +[Term] +id: PATO:0002329 +name: hyponastic +def: "A shape quality inhering in a bearer by virtue of the bearer's exhibiting a upward bending of its leaves or other plant parts." [PATOC:DS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-01-31T11:40:23Z + +[Term] +id: PATO:0002330 +name: oblanceolate +def: "A quality inhering in a bearer by virtue of the bearer's being extended along a straight line, and is shaped like a reversed lance-point, with the tapering point attached to the leafstalk." [PATOC:PG] +subset: value_slim +is_a: PATO:0001199 ! linear +created_by: gkoutos +creation_date: 2012-01-31T11:57:54Z + +[Term] +id: PATO:0002331 +name: adhesive +def: "A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact." [PATOC:GVG] +subset: value_slim +synonym: "resinous" RELATED [] +is_a: PATO:0001431 ! adhesivity +relationship: is_opposite_of PATO:0002332 ! non-adhesive +created_by: gkoutos +creation_date: 2012-01-31T12:28:16Z + +[Term] +id: PATO:0002332 +name: non-adhesive +def: "A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact." [PATOC:GVG] +subset: value_slim +synonym: "non-resinous" RELATED [] +is_a: PATO:0001431 ! adhesivity +relationship: is_opposite_of PATO:0002331 ! adhesive +created_by: gkoutos +creation_date: 2012-01-31T12:28:57Z + +[Term] +id: PATO:0002333 +name: increased adhesivity +def: "A adhesivity which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0002331 ! adhesive +intersection_of: PATO:0002331 ! adhesive +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002334 ! decreased adhesivity +created_by: gkoutos +creation_date: 2012-01-31T12:32:43Z + +[Term] +id: PATO:0002334 +name: decreased adhesivity +def: "A adhesivity which is relatively low." [PATOC:GVG] +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0002331 ! adhesive +intersection_of: PATO:0002331 ! adhesive +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002333 ! increased adhesivity +created_by: gkoutos +creation_date: 2012-01-31T12:42:22Z + +[Term] +id: PATO:0002335 +name: tholiform +def: "A shape quality inhering in a bearer by virtue of the bearer's being dome-shaped." [PATOC:dd] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-01-31T02:32:14Z + +[Term] +id: PATO:0002336 +name: pyramidal +def: "A shape quality inhering in a bearer by virtue of the bearer's having triangular faces that meet at a common point and containing a polygonal shaped base." [PATOC:DD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-01-31T02:35:02Z + +[Term] +id: PATO:0002337 +name: lance-ovate +def: "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; characterized with an egg-shaped form crossed with a lance-head shaped form." [PATOC:DD] +subset: value_slim +is_a: PATO:0001877 ! lanceolate +created_by: gkoutos +creation_date: 2012-01-31T02:43:15Z + +[Term] +id: PATO:0002338 +name: lanceolate-triangular +def: "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle together forming three angles; attached at the broad end." [PATOC:DD] +subset: value_slim +is_a: PATO:0001877 ! lanceolate +created_by: gkoutos +creation_date: 2012-01-31T02:46:43Z + +[Term] +id: PATO:0002339 +name: hispid +def: "A quality of being covered with stiff or rough hairs." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000454 ! hairy +created_by: gkoutos +creation_date: 2012-01-31T02:51:37Z + +[Term] +id: PATO:0002340 +name: hispidulous +def: "A quality of being minutely hispid." [PATOC:DD] +subset: value_slim +is_a: PATO:0002339 ! hispid +created_by: gkoutos +creation_date: 2012-01-31T02:53:21Z + +[Term] +id: PATO:0002341 +name: tomentose +def: "A quality of being covered with short, dense, matted hairs." [thefreedictionary:www.thefreedictionary.com] +subset: value_slim +is_a: PATO:0000454 ! hairy +created_by: gkoutos +creation_date: 2012-01-31T02:55:56Z + +[Term] +id: PATO:0002342 +name: cupulate +def: "A quality inhering in a bearer by virtue of the bearer's being a cupule, with a structure similar to a cup that also encloses the ovule in partiality." [PATOC:DD] +subset: value_slim +is_a: PATO:0002227 ! cup-shaped +created_by: gkoutos +creation_date: 2012-01-31T02:59:07Z + +[Term] +id: PATO:0002343 +name: decumbent +def: "A positional quality inhering in a bearer by virtue of the bearer's lying or growing on the ground but with erect or rising tips." [thefreedictionary:www.thefreedictionary.com] +subset: value_slim +is_a: PATO:0000631 ! prostrate +created_by: gkoutos +creation_date: 2012-01-31T03:13:12Z + +[Term] +id: PATO:0002344 +name: arachnose +def: "A quality inhering in a bearer by virtue of the bearer's being characterized by fine, entangled hairs giving the appearance of cobweb." [PATOC:DD] +subset: value_slim +is_a: PATO:0000454 ! hairy +created_by: gkoutos +creation_date: 2012-01-31T03:49:00Z + +[Term] +id: PATO:0002345 +name: lemon-shaped +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc" [PATOC:MH] +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape +created_by: gkoutos +creation_date: 2012-01-31T03:55:16Z + +[Term] +id: PATO:0002346 +name: snowman-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two connected parts, roughly spherical, of different sizes." [PATOC:MH] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: gkoutos +creation_date: 2012-01-31T03:58:10Z + +[Term] +id: PATO:0002347 +name: obconical +def: "A conical quality inhering in a bearer by virtue of the bearer's resembling a cone, with the pointed end attached to an organism." [wiktionary:http\://en.wiktionary.org/wiki/obconical] +subset: value_slim +is_a: PATO:0002021 ! conical +created_by: gkoutos +creation_date: 2012-01-31T04:05:28Z + +[Term] +id: PATO:0002348 +name: ligneous +def: "A structural quality inhering in a bearer by virtue of the bearer resembling wood." [merriam-webster:http\://www.merriam-webster.com/dictionary/ligneous] +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2012-01-31T04:06:50Z + +[Term] +id: PATO:0002349 +name: basal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the base of an organism relative to another entity." [merriam-webster:http\://www.merriam-webster.com/dictionary/basal] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-01-31T04:12:25Z + +[Term] +id: PATO:0002350 +name: cauline to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the stalk of an organism relative to another entity." [merriam-webster:http\://www.merriam-webster.com/dictionary/cauline] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-01-31T04:13:06Z + +[Term] +id: PATO:0002351 +name: fleshy +def: "A structural quality inhering in a bearer by virtue of the bearer resembling or containing flesh." [wiktionary:http\://en.wiktionary.org/wiki/fleshy] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: gkoutos +creation_date: 2012-01-31T04:15:30Z + +[Term] +id: PATO:0002352 +name: herbaceous +def: "A quality inhering in a bearer by virtue of the bearer's upper parts die back to the rootstock at the end of the growing season." [PATOC:PG] +subset: scalar_slim +is_a: PATO:0001729 ! shedability +created_by: gkoutos +creation_date: 2012-01-31T04:29:36Z + +[Term] +id: PATO:0002353 +name: activation quality +def: "A quality that inheres in a bearer in virtue of its realizing one of its functions." [PATOC:RH] +subset: attribute_slim +is_a: PATO:0001509 ! functionality +created_by: gkoutos +creation_date: 2012-01-31T04:51:42Z + +[Term] +id: PATO:0002354 +name: active +def: "A quality of an physical object that is currently realizing one of its functions." [PATOC:RH] +subset: attribute_slim +is_a: PATO:0002353 ! activation quality +relationship: is_opposite_of PATO:0002355 ! inactive +created_by: gkoutos +creation_date: 2012-01-31T04:52:04Z + +[Term] +id: PATO:0002355 +name: inactive +def: "A quality of a physical object that is currently realizing none of its functions." [PATOC:RH] +subset: attribute_slim +is_a: PATO:0002353 ! activation quality +relationship: is_opposite_of PATO:0002354 ! active +created_by: gkoutos +creation_date: 2012-01-31T04:52:14Z + +[Term] +id: PATO:0002356 +name: constitutively active +def: "A quality of a physical object that has been constantly realizing some of its functions." [PATOC:RH] +subset: attribute_slim +is_a: PATO:0002354 ! active +created_by: gkoutos +creation_date: 2012-01-31T04:52:24Z + +[Term] +id: PATO:0002357 +name: D-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's having a strait side and an arched side giving the bearer the form of the letter D." [PATOC:AE] +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape +created_by: gkoutos +creation_date: 2012-02-21T11:46:51Z + +[Term] +id: PATO:0002358 +name: ridged +def: "An elongated raised margin or border." [PATOC:GVG] +subset: value_slim +synonym: "ridge-like" EXACT [] +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-02-21T12:27:39Z + +[Term] +id: PATO:0002359 +name: broad +def: "A quality inhering in a bearer by virtue of the bearer's width being notably higher than its length." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-03-13T06:04:00Z + +[Term] +id: PATO:0002360 +name: tendency +def: "A disposition that can be compared on a linear scale - that is that it can be increased or decreased." [PATOC:RH] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0001727 ! disposition +created_by: gkoutos +creation_date: 2012-03-16T06:31:50Z + +[Term] +id: PATO:0002361 +name: increased tendency +def: "A tendency which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0002360 ! tendency +intersection_of: PATO:0002360 ! tendency +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002362 ! decreased tendency +created_by: gkoutos +creation_date: 2012-03-16T06:31:57Z + +[Term] +id: PATO:0002362 +name: decreased tendency +def: "A tendency which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0002360 ! tendency +intersection_of: PATO:0002360 ! tendency +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002361 ! increased tendency +created_by: gkoutos +creation_date: 2012-03-16T06:32:57Z + +[Term] +id: PATO:0002363 +name: bronze +def: "A medium brown color with a metallic sheen, resembles the actual alloy bronze." [PATO:LC] +subset: value_slim +is_a: PATO:0000952 ! brown +created_by: gkoutos +creation_date: 2012-05-03T11:08:18Z + +[Term] +id: PATO:0002364 +name: shortened +def: "A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000052 ! shape +relationship: is_opposite_of PATO:0001154 ! elongated +created_by: gkoutos +creation_date: 2012-04-18T06:31:29Z + +[Term] +id: PATO:0002365 +name: intact female +def: "Female quality of having complete, unaltered reproductive organs" [PATOC:MF] +subset: value_slim +is_a: PATO:0000383 ! female +created_by: gkoutos +creation_date: 2012-05-03T11:18:41Z + +[Term] +id: PATO:0002366 +name: intact male +def: "Male quality of having complete, unaltered reproductive organs." [PATOC:MF] +subset: value_slim +is_a: PATO:0000384 ! male +created_by: gkoutos +creation_date: 2012-05-03T11:19:06Z + +[Term] +id: PATO:0002367 +name: castrated male +def: "Male quality of being incapable to reproduce because of functional loss of the testicles from surgical removal or chemical means." [PATOC:MF] +subset: value_slim +is_a: PATO:0000384 ! male +created_by: gkoutos +creation_date: 2012-05-03T11:22:29Z + +[Term] +id: PATO:0002368 +name: nulliparous +def: "A viviparous organism having never given birth." [PATOC:mf] +subset: value_slim +is_a: PATO:0002370 ! parity +created_by: gkoutos +creation_date: 2012-05-03T11:25:25Z + +[Term] +id: PATO:0002369 +name: multiparous +def: "A viviparous organism that has given birth two or more times." [wiki:http\://en.wikipedia.org/wiki/Parity_(biology)] +subset: value_slim +is_a: PATO:0002370 ! parity +created_by: gkoutos +creation_date: 2012-05-03T11:26:34Z + +[Term] +id: PATO:0002370 +name: parity +def: "The number of time that a viviparous organism has given birth." [wiki:http\://en.wikipedia.org/wiki/Parity_(biology)] +subset: attribute_slim +is_a: PATO:0001434 ! reproductive quality +created_by: gkoutos +creation_date: 2012-05-03T11:27:56Z + +[Term] +id: PATO:0002371 +name: primiparous +def: "A viviparous organism having given birth one time." [wiki:http\://en.wikipedia.org/wiki/Parity_(biology)] +subset: value_slim +is_a: PATO:0002370 ! parity +created_by: gkoutos +creation_date: 2012-05-03T11:29:38Z + +[Term] +id: PATO:0002372 +name: grand multi[arous +def: "A viviparous organism that has given birth five or more times." [wiki:http\://en.wikipedia.org/wiki/Parity_(biology)] +subset: value_slim +is_a: PATO:0002369 ! multiparous +created_by: gkoutos +creation_date: 2012-05-03T11:30:28Z + +[Term] +id: PATO:0002373 +name: mediolateral polarity +def: "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the mediolateral axis." [PATOC:DS] +subset: value_slim +is_a: PATO:0001769 ! positional polarity +created_by: gkoutos +creation_date: 2012-07-05T01:49:04Z + +[Term] +id: PATO:0002374 +name: fluctuating +def: "Recurrent and often more or less cyclic alteration." [PATOC:DS] +subset: value_slim +is_a: PATO:0001227 ! variant +created_by: gkoutos +creation_date: 2012-07-05T01:52:36Z + +[Term] +id: PATO:0002375 +name: trumpet-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a trumpet." [PATOC:DS] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: gkoutos +creation_date: 2012-07-05T02:45:17Z + +[Term] +id: PATO:0002376 +name: inflated +def: "A structure quality inhering in a bearer by virtue of the bearer's being filled with air." [PATOC:CVS] +subset: value_slim +synonym: "air-filled" EXACT [] +is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0002377 ! uninflated +created_by: gkoutos +creation_date: 2012-07-05T02:55:10Z + +[Term] +id: PATO:0002377 +name: uninflated +def: "A structure quality inhering in a bearer by virtue of the bearer's being not filed with air." [PATOC:CVS] +subset: value_slim +is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0002376 ! inflated +created_by: gkoutos +creation_date: 2012-07-05T02:56:07Z + +[Term] +id: PATO:0002378 +name: acinus +def: "Having a shape that resembles a many-lobed \"berry,\" such as a raspberry." [wikipedia:https\://en.wikipedia.org/wiki/Acinus] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001979 ! lobed +created_by: gkoutos +creation_date: 2012-07-05T02:58:05Z + +[Term] +id: PATO:0002379 +name: ovariohysterectomized female +def: "A female fertility quality inhering in a female by virtue of the bearer's not being capable of reproducing because of surgical removal of ovaries and uterus." [PATOC:MF] +subset: value_slim +is_a: PATO:0000892 ! female sterile +created_by: gkoutos +creation_date: 2012-07-05T03:04:28Z + +[Term] +id: PATO:0002380 +name: ovariectomized female +def: "A female fertility quality inhering in a female by virtue of the bearer's not being capable of reproducing because of surgical removal of ovaries." [PATOC:MF] +subset: value_slim +is_a: PATO:0000892 ! female sterile +created_by: gkoutos +creation_date: 2012-07-05T03:06:12Z + +[Term] +id: PATO:0002381 +name: waxiness +def: "A composition quality inhering in an bearer by virtue of the presence of long chain aliphatic lipids on the surface of an organism." [PATOC:lm] +subset: attribute_slim +is_a: PATO:0000025 ! composition +created_by: gkoutos +creation_date: 2012-07-05T03:17:00Z + +[Term] +id: PATO:0002382 +name: increased waxiness +def: "A waxiness which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0002381 ! waxiness +intersection_of: PATO:0002381 ! waxiness +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002383 ! decreased waxiness +created_by: gkoutos +creation_date: 2012-07-05T03:18:03Z + +[Term] +id: PATO:0002383 +name: decreased waxiness +def: "A waxiness which is relatively low." [] +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0002381 ! waxiness +intersection_of: PATO:0002381 ! waxiness +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002382 ! increased waxiness +created_by: gkoutos +creation_date: 2012-07-05T03:18:14Z + +[Term] +id: PATO:0002384 +name: waxy +def: "Presence of long chain aliphatic lipids on the surface of an organism." [PATOC:lm] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002381 ! waxiness +created_by: gkoutos +creation_date: 2012-07-05T03:18:21Z + +[Term] +id: PATO:0002385 +name: striate-angular +def: "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines, usually parallel, with at least one salient angle on the margin" [FNA:FNA] +subset: value_slim +is_a: PATO:0001410 ! striated +created_by: gkoutos +creation_date: 2012-07-05T05:17:07Z + +[Term] +id: PATO:0002386 +name: anvil +def: "A concave 3-D shape that inheres in the bearer by virtue of the bearer's shape that is wider at one end and narrow in the middle." [PATOC:AD] +synonym: "anvil shaped" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape +created_by: gkoutos +creation_date: 2012-07-23T03:13:41Z + +[Term] +id: PATO:0002387 +name: peracute +def: "Extremely acute and aggressive onset of a pathological process." [PATOC:PNS] +subset: mpath_slim +subset: value_slim +synonym: "per-acute" EXACT [] +is_a: PATO:0000389 ! acute +created_by: gkoutos +creation_date: 2012-09-15T02:57:46Z + +[Term] +id: PATO:0002388 +name: pedunculate +def: "Being supported by a peduncle or stalk." [PATOC:GV] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2012-10-12T01:10:41Z + +[Term] +id: PATO:0002389 +name: procumbent +def: "Growing horizontal to the ground without setting roots." [PATO:PG] +subset: value_slim +is_a: PATO:0000631 ! prostrate +created_by: gkoutos +creation_date: 2012-10-12T01:33:50Z + +[Term] +id: PATO:0002390 +name: radius +def: "A length quality which is equal to the length of any straight line segment that passes from the center of a circle to any endpoint on the circular boundary. The radius is half of the diameter." [PATO:DS] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000122 ! length +created_by: gkoutos +creation_date: 2012-11-15T05:17:15Z + +[Term] +id: PATO:0002391 +name: triradiate +def: "A shape quality inhering in a bearer by virtue of the bearer's having three rays or radiating branches." [merriam-webster:merriam-webster] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-11-15T05:19:32Z + +[Term] +id: PATO:0002392 +name: diagonal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located on a sloping line joining two nonconsecutive points of an entity relative to another entity." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-11-15T05:21:51Z + +[Term] +id: PATO:0002393 +name: increased tolerance to +def: "A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus." [PATOC:LC] +subset: relational_slim +subset: value_slim +is_a: PATO:0000515 ! tolerant to +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000515 ! tolerant to +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002394 ! decreased tolerance to +created_by: gkoutos +creation_date: 2012-11-15T05:32:07Z + +[Term] +id: PATO:0002394 +name: decreased tolerance to +def: "A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus." [PATOC:LC] +subset: relational_slim +subset: value_slim +is_a: PATO:0000515 ! tolerant to +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000515 ! tolerant to +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002393 ! increased tolerance to +created_by: gkoutos +creation_date: 2012-11-15T05:33:05Z + +[Term] +id: PATO:0002395 +name: mislocalized abaxially +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned away from the axis of an organism." [PATOC:EH] +subset: value_slim +is_a: PATO:0000628 ! mislocalised +created_by: gkoutos +creation_date: 2012-11-20T04:13:32Z + +[Term] +id: PATO:0002396 +name: mislocalized adaxially +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the axis of an organism." [PATOC:EH] +subset: value_slim +is_a: PATO:0000628 ! mislocalised +created_by: gkoutos +creation_date: 2012-11-20T04:15:12Z + +[Term] +id: PATO:0002397 +name: subcircular +def: "A circular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, circular." [PATOC:AD] +subset: value_slim +synonym: "round" RELATED [] +synonym: "rounded" RELATED [] +is_a: PATO:0002006 ! 2-D shape +created_by: gkoutos +creation_date: 2012-12-07T05:32:18Z + +[Term] +id: PATO:0002398 +name: obsolete +is_obsolete: true +created_by: gkoutos +creation_date: 2012-12-07T05:34:16Z + +[Term] +id: PATO:0002399 +name: anteromedially rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the front and the middle of an organism." [PATOC:JI] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001599 ! rotated +created_by: gkoutos +creation_date: 2012-12-07T05:41:01Z + +[Term] +id: PATO:0002400 +name: fusiform +def: "Having a spindle-like shape that is wide in the middle and tapers at both ends." [wikipedia:wikipedia] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001409 ! spindle-shaped +created_by: gkoutos +creation_date: 2012-12-07T05:43:25Z + +[Term] +id: PATO:0002401 +name: random pattern +def: "characterised by an unidentifiable pattern." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +created_by: gkoutos +creation_date: 2012-12-17T10:37:55Z + +[Term] +id: PATO:0002402 +name: multifocal to coalescing +def: "Multiple lesions some interconnecting with each other." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001791 ! multi-localised +created_by: gkoutos +creation_date: 2012-12-17T10:40:18Z + +[Term] +id: PATO:0002403 +name: generalized +def: "Affecting all regions without specificity of distribution." [PATOC:MPTH] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +synonym: "generalised" EXACT [] +is_a: PATO:0000060 ! spatial pattern +created_by: gkoutos +creation_date: 2012-12-17T10:41:37Z + +[Term] +id: PATO:0002404 +name: segmental +def: "Affecting a segment or segments." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +created_by: gkoutos +creation_date: 2012-12-17T10:43:13Z + +[Term] +id: PATO:0002405 +name: friability +def: "A structural quality inhering in a bearer by virtue of the bearer's disposition to be reduced to smaller pieces with little effort." [Wikipedia:https\://en.wikipedia.org/wiki/Friability] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2012-12-17T10:47:16Z + +[Term] +id: PATO:0002406 +name: friable +def: "Easily reduced to powder or easily fragmentable or crumbly." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002405 ! friability +created_by: gkoutos +creation_date: 2012-12-17T10:48:30Z + +[Term] +id: PATO:0002407 +name: indurated +def: "Having become firm or hard especially by increase of fibrous elements." [mw:http\://www.merriam-webster.com/dictionary/indurated] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002405 ! friability +created_by: gkoutos +creation_date: 2012-12-17T10:49:11Z + +[Term] +id: PATO:0002408 +name: watery +def: "Having the consistency of water." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: gkoutos +creation_date: 2012-12-17T10:51:32Z + +[Term] +id: PATO:0002409 +name: fluid-filled +def: "Bounded structure filled with fluid." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002014 ! structure, cavities +created_by: gkoutos +creation_date: 2012-12-17T10:53:18Z + +[Term] +id: PATO:0002410 +name: beige +def: "A colour that is very pale yellowish brown." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002413 ! light yellow brown +created_by: gkoutos +creation_date: 2012-12-17T10:54:55Z + +[Term] +id: PATO:0002411 +name: yellow brown +def: "A color consisting of yellow and brown hue." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000952 ! brown +created_by: gkoutos +creation_date: 2012-12-17T10:55:51Z + +[Term] +id: PATO:0002412 +name: dark yellow brown +def: "A color consisting of yellow and brown hue and low brightness." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002411 ! yellow brown +created_by: gkoutos +creation_date: 2012-12-17T10:56:22Z + +[Term] +id: PATO:0002413 +name: light yellow brown +def: "A color consisting of yellow and brown hue and high brightness." [PATOC:GVG] +is_a: PATO:0002411 ! yellow brown +created_by: gkoutos +creation_date: 2012-12-17T10:57:27Z + +[Term] +id: PATO:0002414 +name: chronic-active +def: "A quality of duration having progressive course of indefinite duration with active, acute-like elements." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001863 ! chronic +created_by: gkoutos +creation_date: 2012-12-17T10:59:58Z + +[Term] +id: PATO:0002415 +name: focally extensive +def: "Single lesion with expansion into surrounding tissue." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000627 ! localized +created_by: gkoutos +creation_date: 2012-12-17T11:01:31Z + +[Term] +id: PATO:0002416 +name: sunken +def: "Flattened from above downward; below the normal level or the level of the surrounding parts." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001687 ! elevation +created_by: gkoutos +creation_date: 2012-12-17T12:06:55Z + +[Term] +id: PATO:0002417 +name: transmural +def: "Extending through or affecting the entire thickness of the wall of an organ or cavity or boundary." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-12-17T02:16:18Z + +[Term] +id: PATO:0002418 +name: acidophilic +def: "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for acidic dyes under specific ph conditions." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +created_by: gkoutos +creation_date: 2012-12-17T03:01:19Z + +[Term] +id: PATO:0002419 +name: eosinophilic +def: "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for eosin dye." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +created_by: gkoutos +creation_date: 2012-12-17T03:02:09Z + +[Term] +id: PATO:0002420 +name: amphiphilic +def: "Having both hydrophilic and hydrophobic (or lipophilic) groups." [wikipedia:http\://en.wiktionary.org/wiki/amphiphilic] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +created_by: gkoutos +creation_date: 2012-12-17T03:04:39Z + +[Term] +id: PATO:0002421 +name: cicatricial +def: "Having or resembling the characteristic of a cicatrix - a scar resulting from formation and contraction of fibrous tissue." [mw:http\://www.merriam-webster.com/dictionary/cicatricial] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-12-17T03:08:09Z + +[Term] +id: PATO:0002422 +name: acinar +def: "Pertaining to the individual parts making up an aggregate fruit like a many-lobed \"berry,\" such as a raspberry." [wikipedia:https\://en.wikipedia.org/wiki/Acinus] +comment: Acinus is Latin for berry. +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2012-12-17T03:11:10Z + +[Term] +id: PATO:0002423 +name: papillomatous +def: "A round or lobulated protruding form resembling a nipple." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-12-17T03:13:44Z + +[Term] +id: PATO:0002424 +name: divergent from +def: "A positional quality inhering in a bearer by virtue of the bearer's having two or more entities that extend from a common point in different directions." [PATOC:AD] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-12-20T11:43:47Z + +[Term] +id: PATO:0002425 +name: exposed +def: "Open to view or not covered by another entity." [PATOC:WD] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-12-20T11:47:16Z + +[Term] +id: PATO:0002426 +name: scaphoid +def: "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a boat." [wordnetweb:wordnetweb] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:12:03Z + +[Term] +id: PATO:0002427 +name: knobbled +def: "A surface feature shape having numerous very small circular rounded projections or protuberances." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape +created_by: gkoutos +creation_date: 2013-01-29T09:15:53Z + +[Term] +id: PATO:0002428 +name: tripodal +def: "A 3-D shape with three supports or legs." [PATOC:WC] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:18:44Z + +[Term] +id: PATO:0002429 +name: x-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter X." [PATOC:WC] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:19:53Z + +[Term] +id: PATO:0002430 +name: strap-shaped +def: "A shape quality in which the bearer is shaped like a narrow band; ligulate." [thefreedictionary:thefreedictionary] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:21:17Z + +[Term] +id: PATO:0002431 +name: waisted +def: "A shape quality in which the bearer possesses a gradual, yet distinct, thinning from a wide starting point." [PATOC:WC] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:24:46Z + +[Term] +id: PATO:0002432 +name: spade-shaped +def: "A shape that is in the form of a spade." [PATOC:WC] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:26:49Z + +[Term] +id: PATO:0002433 +name: sculpted surface +def: "A surface feature shape marked by large amounts of relief, often with multiple ridges and grooves in close association. Topographically complex." [PATOC:AD] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape +created_by: gkoutos +creation_date: 2013-01-29T09:27:55Z + +[Term] +id: PATO:0002434 +name: perpendicular to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity." [PATOC:WC] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-01-29T09:29:55Z + +[Term] +id: PATO:0002435 +name: abutting +def: "A positional quality inhering in a bearer by virtue of the bearer touching another entity along a border or with a projecting part." [merriam-webster:merriam-webster] +subset: relational_slim +subset: scalar_slim +subset: value_slim +synonym: "abut" EXACT [] +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-01-29T09:31:12Z + +[Term] +id: PATO:0002436 +name: offset +def: "A positional quality inhering in a bearer by virtue of the bearer's position being displaced from a reference point." [PATOC:AD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-01-29T09:32:22Z + +[Term] +id: PATO:0002437 +name: interlocked with +def: "A structural quality inhering in a bearer by virtue of the bearer's being locked together or interconnected to another entity." [merriam-webster:merriam-webster] +subset: relational_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-01-29T09:37:13Z + +[Term] +id: PATO:0002438 +name: subdermal +def: "A structural quality inhering in a bearer by virtue of the bearer's being located or placed beneath the skin." [thefreedictionary:thefreedictionary] +subset: value_slim +synonym: "subcutaneous" EXACT [] +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-01-29T09:41:50Z + +[Term] +id: PATO:0002439 +name: w-shaped +def: "An angular shape quality inhering in a bearer by virtue of the bearer's having two angles in its length giving the bearer the form of the letter W." [PATOC:WC] +subset: value_slim +is_a: PATO:0001977 ! angular +created_by: gkoutos +creation_date: 2013-01-29T09:45:54Z + +[Term] +id: PATO:0002440 +name: ornamentation +def: "A surface feature shape quality inhering in a bearer by virtue of the degree of the bearer's highly topographical with ridges, pits, rugosity or other surface structures." [PATOC:GVG] +subset: disposition_slim +is_a: PATO:0001925 ! surface feature shape +created_by: gkoutos +creation_date: 2013-01-29T10:57:42Z + +[Term] +id: PATO:0002441 +name: ornamented +def: "A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures." [PATOC:AD] +subset: value_slim +is_a: PATO:0002440 ! ornamentation +relationship: is_opposite_of PATO:0002442 ! unornamented +created_by: gkoutos +creation_date: 2013-01-29T10:59:42Z + +[Term] +id: PATO:0002442 +name: unornamented +def: "A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures." [PATOC:AD] +subset: value_slim +is_a: PATO:0002440 ! ornamentation +relationship: is_opposite_of PATO:0002441 ! ornamented +created_by: gkoutos +creation_date: 2013-01-29T11:00:20Z + +[Term] +id: PATO:0002443 +name: level with +def: "A positional quality inhering in a bearer by virtue of the bearer's being located at the same level as another entity." [PATOC:NI] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-01-29T11:01:46Z + +[Term] +id: PATO:0002444 +name: mineralized +def: "A composition quality inhering in a bearer by virtue of the bearer's being composed of or possessing inorganic material." [PATOC:WC] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: gkoutos +creation_date: 2013-01-29T11:03:49Z + +[Term] +id: PATO:0002445 +name: torsioned +def: "A shape quality inhering in a bearer by virtue of the bearer's being twisted or turned." [freedictionary:freedictionary] +comment: The word "torsion" has multiple different meanings in different context (e.g. the act of twisting or the morphology of the digestive tract in gastropods). This term refers purely to the resulting shape and is not to be used in the engineering and mechanics sense of torsion. \nNote: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', but it is different in that something that is kinked has sharp twists or turns. +synonym: "twisted" EXACT [] +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T11:05:26Z + +[Term] +id: PATO:0002446 +name: anchor-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an anchor." [PATOC:WC] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T11:07:17Z + +[Term] +id: PATO:0002447 +name: quadripartite +def: "A shape quality inhering in a bearer by virtue of the bearer being divided into four parts." [PATOC:WC] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: gkoutos +creation_date: 2013-01-29T11:08:28Z + +[Term] +id: PATO:0002448 +name: oriented towards +def: "A quality inhering in a bearer by virtue of the bearer's being aligned or positioned towards another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-02-16T02:57:06Z + +[Term] +id: PATO:0002449 +name: posteromedial to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and mid-line surface of an organism relative to another entity." [PATOC:WC] +subset: relational_slim +subset: value_slim +is_a: PATO:0001633 ! posterior to +created_by: gkoutos +creation_date: 2013-02-16T03:00:46Z + +[Term] +id: PATO:0002450 +name: firm +def: "A hardness quality of giving significant resistance to pressure." [PATOC:CM] +subset: value_slim +is_a: PATO:0000048 ! hardness +created_by: gkoutos +creation_date: 2013-02-26T02:02:38Z + +[Term] +id: PATO:0002451 +name: sexually dimorphic +def: "A quality inhering in a bearer by virtue of the bearer's exhibiting a phenotypic difference between males and females of the same species." [PATOC:WC] +subset: value_slim +is_a: PATO:0001995 ! organismal quality +created_by: gkoutos +creation_date: 2013-03-11T09:22:04Z + +[Term] +id: PATO:0002452 +name: decondensed +def: "A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed." [PATOC:JL] +subset: value_slim +is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0001485 ! condensed +created_by: gkoutos +creation_date: 2013-04-08T08:43:31Z + +[Term] +id: PATO:0002453 +name: eroding +def: "A structural quality inhering in a bearer by virtue of the bearer bring gradually worn away." [PATOC:JL] +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-04-08T08:45:08Z + +[Term] +id: PATO:0002454 +name: carpel-like +def: "A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a carpel." [PATO:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:00:28Z + +[Term] +id: PATO:0002455 +name: corymb-like +def: "A quality inhering in a bearer by virtue of the bearer's architecture bearing resemblence to a corymb type of inflorescence." [PATOC:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:01:02Z + +[Term] +id: PATO:0002456 +name: inflorescence-like +def: "A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of an inflorescence." [PATOC:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:02:05Z + +[Term] +id: PATO:0002457 +name: leaf-like +def: "A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a leaf." [PATOC:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:02:58Z + +[Term] +id: PATO:0002458 +name: pin-like +def: "A quality inhering in a bearer by virtue of the bearer being thin and lacking outgrowths." [PATOC:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:03:56Z + +[Term] +id: PATO:0002459 +name: sepal-like +def: "A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a sepal," [PATOC:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:04:36Z + +[Term] +id: PATO:0002460 +name: shriveled +def: "A structural quality inhering in a bearer by virtue of the bearer being smaller and contracted, expecially due to loss of moisture." [PATOC:JL] +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-04-09T06:05:18Z + +[Term] +id: PATO:0002461 +name: wilty +def: "To bend or hang downwards due to loss of water" [] +subset: value_slim +is_a: PATO:0002165 ! drooping +created_by: gkoutos +creation_date: 2013-04-09T06:06:14Z + +[Term] +id: PATO:0002462 +name: collagenous +def: "A composition quality inhering in an bearer by virtue of the bearer's consisting of collagen." [PATOC:WD] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: gkoutos +creation_date: 2013-09-15T11:34:15Z + +[Term] +id: PATO:0002463 +name: extends to +def: "A positional quality inhering in a bearer by virtue of some aspect of the bearer extending to the position of another entity." [PATOC:WD] +subset: relational_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-09-15T11:41:00Z + +[Term] +id: PATO:0002464 +name: extends beyond +def: "A positional quality inhering in a bearer by virtue of some aspect of the bearer extending past the position of another entity." [PATOC:WD] +subset: relational_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-09-15T11:42:15Z + +[Term] +id: PATO:0002465 +name: prism shaped +def: "A quality inhering in a bearer by virtue of the bearer's resembling a prism." [] +subset: value_slim +synonym: "tent shaped" RELATED [] +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-09-15T11:44:03Z + +[Term] +id: PATO:0002466 +name: keyhole shaped +def: "A shape quality inhering in a bearer by virtue of the bearer resembling a keyhole." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-09-15T11:45:53Z + +[Term] +id: PATO:0002467 +name: lathlike +def: "A shape quality inhering in a bearer by virtue of the bearer resembling a thin narrow strip." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-09-15T11:47:11Z + +[Term] +id: PATO:0002468 +name: distensible +def: "A structure quality inhering in a bearer by virtue of the bearer's being capable of swelling or stretching." [PATOC:WD] +subset: value_slim +is_a: PATO:0015008 ! distensibility +created_by: gkoutos +creation_date: 2013-09-15T11:48:26Z + +[Term] +id: PATO:0002469 +name: sutured to +def: "Structural quality inhereing in a bearer in which a joint has apposed bony surfaces united by fibrous tissue, permitting no movement; found only between bones." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-09-15T11:55:50Z + +[Term] +id: PATO:0002470 +name: transformed to +def: "A morphological quality between two bearers inhering that one bearer is subject to change the nature, function, or condition of itself to become the other." [PATOC:LC] +subset: relational_slim +subset: value_slim +is_a: PATO:0000051 ! morphology +created_by: gkoutos +creation_date: 2013-09-15T12:01:57Z + +[Term] +id: PATO:0002471 +name: increased velocity +def: "A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position." [PATOC:NV] +subset: value_slim +is_a: PATO:0002242 ! velocity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002242 ! velocity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002472 ! decreased velocity +created_by: gkoutos +creation_date: 2013-09-15T12:03:45Z + +[Term] +id: PATO:0002472 +name: decreased velocity +def: "A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position." [PATOC:NV] +subset: value_slim +is_a: PATO:0002242 ! velocity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002242 ! velocity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002471 ! increased velocity +created_by: gkoutos +creation_date: 2013-09-15T12:05:06Z + +[Term] +id: PATO:0002473 +name: neoplastic, spontaneous +def: "A disposition inhering in a tumour by virtue of the bearer's disposition to spontaneously arise." [PATOC:NV] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002011 ! neoplastic +created_by: gkoutos +creation_date: 2013-09-15T12:07:08Z + +[Term] +id: PATO:0002474 +name: bitter +def: "A flavor quality inhering in a bearer by virtue of the bearer's having an acrid, sharp, or disagreeable flavor." [PATOC:LC] +subset: value_slim +is_a: PATO:0001329 ! flavourful +created_by: gkoutos +creation_date: 2013-09-15T12:09:15Z + +[Term] +id: PATO:0002475 +name: subterminal +def: "A position quality inhering in a bearer by virtue of the bearer's existing near the end of another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-09-15T12:17:41Z + +[Term] +id: PATO:0002476 +name: terminal +def: "A position quality inhering in a bearer by virtue of the bearer's forming the end of another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-09-15T12:18:08Z + +[Term] +id: PATO:0002477 +name: brittle +def: "A structural quality inhering in a bearer by virtue of the bearer's disposition to breaks without significant deformation (strain) when subjected to stress." [wikipedia:http\://en.wikipedia.org/wiki/Brittleness] +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-09-15T12:25:03Z + +[Term] +id: PATO:0002478 +name: transversely striated +def: "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented transversely relative to the long axis of the bearer." [PATOC:DS] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001410 ! striated +created_by: gkoutos +creation_date: 2013-09-15T12:29:15Z + +[Term] +id: PATO:0002479 +name: obliquely striated +def: "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented obliquely relative to the long axis of the bearer." [PATOC:DS] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001410 ! striated +created_by: gkoutos +creation_date: 2013-09-15T12:29:42Z + +[Term] +id: PATO:0002480 +name: poorly ossified +def: "A quality inhering in an bearer by virtue of the bearer's possessing only minor levels of ossification." [PATOC:AD] +subset: value_slim +is_a: PATO:0001448 ! ossified +created_by: gkoutos +creation_date: 2013-09-30T05:47:07Z + +[Term] +id: PATO:0002481 +name: oblique orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a slanting direction or position : neither perpendicular nor parallel." [merriam-wester:http\://www.merriam-webster.com/dictionary/oblique] +subset: value_slim +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-09-30T05:49:50Z + +[Term] +id: PATO:0002482 +name: slit-like +def: "Shape quality inhering in a bearer by virtue of the bearer exhibiting a narrow and elongate opening." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-09-30T05:51:39Z + +[Term] +id: PATO:0002483 +name: external to +def: "Positional quality in which an entity is located outside of another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-09-30T06:06:27Z + +[Term] +id: PATO:0002484 +name: inverted-V shaped +def: "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of an inverted letter V." [PATOC:WD] +subset: value_slim +synonym: "chevron shaped" BROAD [] +is_a: PATO:0001977 ! angular +created_by: gkoutos +creation_date: 2013-10-10T03:55:44Z + +[Term] +id: PATO:0002485 +name: parallel-sided +def: "A shape quality inhering in a bearer by virtue of the bearer's possessing two sides that are at the same continuous distance relative to each other." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-10-10T03:58:37Z + +[Term] +id: PATO:0002486 +name: multi-organismal process quality +def: "A quality inhering in a process by virtue of that process having two or more organisms as participants." [PATOC:DS] +subset: attribute_slim +is_a: PATO:0001236 ! process quality +created_by: gkoutos +creation_date: 2013-10-10T04:08:44Z + +[Term] +id: PATO:0002487 +name: single organismal process quality +def: "A quality inhering in a process by virtue of that process having exactly one organism as a participant." [PATOC:DS] +subset: attribute_slim +is_a: PATO:0001236 ! process quality +created_by: gkoutos +creation_date: 2013-10-10T04:09:51Z + +[Term] +id: PATO:0002488 +name: overlapping +def: "Overlap with quality inhering in a bearer by virtue of the bearer's being positioned over another entity so as to cover some portion of it." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0001590 ! overlap with +created_by: gkoutos +creation_date: 2013-10-10T04:12:22Z + +[Term] +id: PATO:0002489 +name: overlapped by +def: "Overlap with quality inhering in a bearer by virtue of the bearer's being positioned under another entity so as to be covered by some portion of it." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0001590 ! overlap with +created_by: gkoutos +creation_date: 2013-10-10T04:13:04Z + +[Term] +id: PATO:0002490 +name: anterior orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteriorly." [PATOC:WD] +subset: value_slim +synonym: "anteriorly directly" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:11:26Z + +[Term] +id: PATO:0002491 +name: anterodorsal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally." [PATOC:WD] +subset: value_slim +synonym: "anterodorsally directed" EXACT [] +is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002526 ! anterodistal orientation +created_by: gkoutos +creation_date: 2013-10-10T05:12:15Z + +[Term] +id: PATO:0002492 +name: anterolateral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterolaterally." [PATOC:WD] +subset: value_slim +synonym: "anterolaterally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:13:17Z + +[Term] +id: PATO:0002493 +name: anteroventral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteroventrally." [PATOC:WD] +subset: value_slim +synonym: "anteroventrally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:13:55Z + +[Term] +id: PATO:0002494 +name: distal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distally." [PATOC:WD] +subset: value_slim +synonym: "distally directed" EXACT [] +is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002495 ! dorsal orientation +created_by: gkoutos +creation_date: 2013-10-10T05:14:37Z + +[Term] +id: PATO:0002495 +name: dorsal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally." [PATOC:WD] +subset: value_slim +synonym: "dorsally directed" EXACT [] +is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002494 ! distal orientation +created_by: gkoutos +creation_date: 2013-10-10T05:15:24Z + +[Term] +id: PATO:0002496 +name: dorsolateral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsolaterally." [PATOC:WD] +subset: value_slim +synonym: "dorsolaterally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:16:04Z + +[Term] +id: PATO:0002497 +name: lateral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed laterally." [PATOC:WD] +subset: value_slim +synonym: "laterally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:16:45Z + +[Term] +id: PATO:0002498 +name: medial orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed medially." [PATOC:WD] +subset: value_slim +synonym: "medially directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:17:30Z + +[Term] +id: PATO:0002499 +name: posterior orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteriorly." [PATOC:WD] +subset: value_slim +synonym: "posteriorly directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:18:21Z + +[Term] +id: PATO:0002500 +name: ventrolaterally orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrolaterally." [PATOC:WD] +subset: value_slim +synonym: "ventrolaterally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:19:16Z + +[Term] +id: PATO:0002501 +name: ventral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrally." [PATOC:WD] +subset: value_slim +synonym: "ventrally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:19:22Z + +[Term] +id: PATO:0002502 +name: transverse orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed transversely." [PATOC:WD] +subset: value_slim +synonym: "transversely oriented" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:19:25Z + +[Term] +id: PATO:0002503 +name: posterolateral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterolaterally." [PATOC:WD] +subset: value_slim +synonym: "posterolaterally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:19:28Z + +[Term] +id: PATO:0002504 +name: posterodorsal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally." [PATOC:WD] +subset: value_slim +synonym: "posterodorsally directed" EXACT [] +is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002527 ! posterodistal orientation +created_by: gkoutos +creation_date: 2013-10-10T05:19:36Z + +[Term] +id: PATO:0002505 +name: nucleated +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001404 ! nucleate quality +created_by: gkoutos +creation_date: 2013-10-21T05:44:34Z + +[Term] +id: PATO:0002506 +name: alobate +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's not having undulating edges forming lobes." [PATOC:DOS] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape +created_by: gkoutos +creation_date: 2013-10-25T04:42:40Z + +[Term] +id: PATO:0002507 +name: keratinous +def: "A composition quality inhering in a bearer by virtue of the bearer's consisting of keratin." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: segerdel +creation_date: 2014-02-04T12:38:14Z + +[Term] +id: PATO:0002508 +name: concealed +def: "A positional quality inhering in a bearer by virtue of the bearer being hidden from view." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-04T01:30:21Z + +[Term] +id: PATO:0002509 +name: hexagonal +def: "A 2-D shape quality inhering in a bearer by virtue of the bearer's having six angles and six sides." [Merriam-Webster:hexagonal] +subset: value_slim +is_a: PATO:0002006 ! 2-D shape +created_by: segerdel +creation_date: 2014-02-04T01:50:05Z + +[Term] +id: PATO:0002510 +name: multipartite +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer being divided into multiple parts." [PATOC:EJS] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: segerdel +creation_date: 2014-02-06T01:15:28Z + +[Term] +id: PATO:0002511 +name: cane-like +def: "A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a cane." [PATOC:EJS] +subset: value_slim +synonym: "cane-shaped" RELATED [] +is_a: PATO:0000052 ! shape +created_by: segerdel +creation_date: 2014-02-06T02:04:35Z + +[Term] +id: PATO:0002512 +name: confluent with +def: "A positional quality inhering in a bearer by virtue of the bearer flowing or coming together with another entity." [Merriam-Webster:confluent] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-06T02:28:39Z + +[Term] +id: PATO:0002513 +name: oblique to +def: "A positional quality inhering in a bearer by virtue of the bearer's having a slanting direction (neither perpendicular nor parallel) relative to another entity." [PATOC:EJS] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-06T02:54:16Z + +[Term] +id: PATO:0002514 +name: anteromedial orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteromedially." [PATOC:EJS] +subset: value_slim +synonym: "medioanterior orientation" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: segerdel +creation_date: 2014-02-07T12:59:10Z + +[Term] +id: PATO:0002515 +name: increased elevation relative to +def: "An elevation quality inhering in a bearer by virtue the bearer's being in a high position relative to another entity." [PATOC:EJS] +subset: relational_slim +subset: value_slim +is_a: PATO:0001687 ! elevation +created_by: segerdel +creation_date: 2014-02-07T01:12:48Z + +[Term] +id: PATO:0002516 +name: concealed by +def: "A positional quality inhering in a bearer by virtue of the bearer being hidden from view or covered by another entity." [PATOC:EJS] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-10T01:13:53Z + +[Term] +id: PATO:0002517 +name: saddle-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a saddle." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: segerdel +creation_date: 2014-02-10T01:23:13Z + +[Term] +id: PATO:0002518 +name: flush +def: "A positional quality inhering in a bearer by virtue of the bearer being level or even with another surface." [WordReference:flush] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-10T01:26:50Z + +[Term] +id: PATO:0002519 +name: cancellous +def: "A structural quality inhering in a bearer by virtue of the bearer's having an open, latticed, or porous structure; used especially of bone." [TheFreeDictionary:cancellous] +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: segerdel +creation_date: 2014-02-10T01:33:14Z + +[Term] +id: PATO:0002520 +name: scute-like +def: "A shape quality inhering in a bearer by virtue of the bearer being shaped like a scute or an osteoderm." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: segerdel +creation_date: 2014-02-10T01:37:47Z + +[Term] +id: PATO:0002521 +name: funnel-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a funnel." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: segerdel +creation_date: 2014-02-10T01:40:05Z + +[Term] +id: PATO:0002522 +name: keel-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer having an elongate structure, similar to a ridge, that extends longitudinally along an anatomical entity." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: segerdel +creation_date: 2014-02-10T01:46:38Z + +[Term] +id: PATO:0002523 +name: vertical to +def: "A positional quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity and to the horizon." [PATOC:EJS] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-10T02:25:42Z + +[Term] +id: PATO:0002524 +name: mesiolateral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed mesiolaterally." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000133 ! orientation +created_by: segerdel +creation_date: 2014-02-10T02:37:42Z + +[Term] +id: PATO:0002525 +name: separating +def: "A structural quality inhering in a bearer by virtue of the bearer being in a position that produces a separation in, or acting to separate, another entity." [PATOC:EJS] +subset: relational_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: segerdel +creation_date: 2014-02-10T02:48:15Z + +[Term] +id: PATO:0002526 +name: anterodistal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally." [PATOC:EJS] +synonym: "antero-distal orientation" EXACT [] +is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002491 ! anterodorsal orientation +created_by: segerdel +creation_date: 2014-03-11T11:28:39Z + +[Term] +id: PATO:0002527 +name: posterodistal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally." [PATOC:EJS] +synonym: "postero-distal orientation" EXACT [] +is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002504 ! posterodorsal orientation +created_by: segerdel +creation_date: 2014-03-11T11:29:22Z + +[Term] +id: PATO:0002528 +name: obsolete borderline intensity +comment: obsoleted because the ID was accidentally reused +is_obsolete: true +replaced_by: PATO:0002628 + +[Term] +id: PATO:0002529 +name: obsolete profound intensity +comment: obsoleted because the ID was accidentally reused +is_obsolete: true +replaced_by: PATO:0002629 + +[Term] +id: PATO:0002530 +name: obsolete episodic +comment: obsoleted because the ID was accidentally reused +is_obsolete: true +replaced_by: PATO:0002630 + +[Term] +id: PATO:0002531 +name: obsolete refractory +comment: obsoleted because the ID was accidentally reused +is_obsolete: true +replaced_by: PATO:0002631 + +[Term] +id: PATO:0002532 +name: obsolete secondary +comment: obsoleted because the ID was accidentally reused +is_obsolete: true +replaced_by: PATO:0002632 + +[Term] +id: PATO:0002533 +name: bipartite +def: "A multipartite quality inhering in a bearer by virtue of the bearer being divided into two parts." [PATOC:WD] +subset: value_slim +is_a: PATO:0002510 ! multipartite +created_by: wasila.dahdul +creation_date: 2014-08-12T11:12:13Z + +[Term] +id: PATO:0002534 +name: plowshare shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a plowshare." [PATOC:WD] +subset: value_slim +synonym: "plow-share shaped" EXACT [] +xref: Image:http\://2.bp.blogspot.com/_TbkIC-eqFNM/S66IJ3omNWI/AAAAAAAAFSk/pzThLJPvYZw/s1600/ard-detail.gif +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-08-12T11:23:12Z + +[Term] +id: PATO:0002535 +name: peg-like +def: "A shape quality inhering in a bearer by virtue of the bearer's having a short and stout cylindrical shape." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-08-12T11:30:08Z + +[Term] +id: PATO:0002536 +name: boomerang shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a boomerang, with two arms connected at an angle." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-08-12T11:32:16Z + +[Term] +id: PATO:0002537 +name: subovoid +def: "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a shape not quite ovoid. approximately ovoid." [merriam-webster:http\://www.merriam-webster.com/dictionary/subovoid] +subset: value_slim +is_a: PATO:0001865 ! spheroid +created_by: wasila.dahdul +creation_date: 2014-08-12T11:51:38Z + +[Term] +id: PATO:0002538 +name: concavo-convex +def: "A shape quality that obtains by virtue of the bearer being concave on one side and convex on the other." [merriam-webster:http\://www.merriam-webster.com/dictionary/concavo-convex] +subset: value_slim +synonym: "concavoconvex" EXACT [] +is_a: PATO:0002005 ! concavity +created_by: wasila.dahdul +creation_date: 2014-08-12T11:56:13Z + +[Term] +id: PATO:0002539 +name: ring shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a ring (a circular shape enclosing a space)." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-08-12T12:01:56Z + +[Term] +id: PATO:0002540 +name: spur shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's possessing a small, spike-like shape." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-08-12T12:07:44Z + +[Term] +id: PATO:0002541 +name: homeostatic +def: "Pertaining to the ability or tendency of an organism or cell to maintain internal equilibrium by adjusting its physiological processes." [GO:0042592] +is_a: PATO:0001995 ! organismal quality +created_by: haendel +creation_date: 2014-12-01T16:07:28Z + +[Term] +id: PATO:0002628 +name: borderline intensity +def: "An intensity which is borderline in it its effect or force as compared to baseline or normal." [] +subset: hpo_slim +is_a: PATO:0000049 ! intensity +created_by: haendel +creation_date: 2014-05-26T06:42:21Z + +[Term] +id: PATO:0002629 +name: profound intensity +def: "An intensity which is characterized by being very severe." [PATO:MAH] +subset: hpo_slim +is_a: PATO:0000049 ! intensity +created_by: haendel +creation_date: 2014-05-26T06:44:11Z + +[Term] +id: PATO:0002630 +name: episodic +def: "An occurrence quality inhering in a bearer by virtue of the bearer's having a course that occurs occasionally." [PATO:MAH] +subset: hpo_slim +is_a: PATO:0000057 ! occurrence +created_by: haendel +creation_date: 2014-05-26T06:50:16Z + +[Term] +id: PATO:0002631 +name: refractory +def: "An occurrence of a process during which time there is an inability to change the course, extent, or repetition of the process." [PATO:MAH] +subset: hpo_slim +is_a: PATO:0000057 ! occurrence +created_by: haendel +creation_date: 2014-05-26T13:09:29Z + +[Term] +id: PATO:0002632 +name: secondary +def: "A quality in which the effect or outcome is not primary or the focus of the observation." [PATO:MAH] +subset: hpo_slim +is_a: PATO:0000068 ! qualitative +created_by: haendel +creation_date: 2014-05-26T13:17:45Z + +[Term] +id: PATO:0005000 +name: hemispheroid +def: "A 3-D shape that is half of a sphere." [PATOC:WD] +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:25:08Z + +[Term] +id: PATO:0005001 +name: variability of count +def: "A variability quality inhering in the bearer by virtue of the bearer having a variable number or count of an entity." [PATOC:WD] +subset: value_slim +synonym: "variable number" RELATED [] +is_a: PATO:0001303 ! variability +relationship: towards PATO:0000070 ! amount +created_by: wasila.dahdul +creation_date: 2014-09-09T12:27:33Z + +[Term] +id: PATO:0005002 +name: pear shaped +def: "Having the shape of a pear; tapering near the top and bulging toward the base or bottom. From thefreedictionary.com" [PATOC:WD] +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:30:02Z + +[Term] +id: PATO:0005003 +name: paddle shaped +def: "A quality inhering in a bearer by virtue of the bearer's resembling the form of a paddle." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:34:45Z + +[Term] +id: PATO:0005004 +name: subelliptical +def: "A shape that is almost an ellipse." [PATOC:WD] +subset: value_slim +is_a: PATO:0002318 ! superelliptic +created_by: wasila.dahdul +creation_date: 2014-09-09T12:36:15Z + +[Term] +id: PATO:0005005 +name: radiating +def: "Shape quality inhering in a bearer expanding outward, or having parts expanding outward, from a center point." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:37:27Z + +[Term] +id: PATO:0005006 +name: differentiated from +def: "A morphology quality inhering in a bearer by virtue of the bearer's being morphologically distinguishable from another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +synonym: "distinct from" EXACT [] +is_a: PATO:0000051 ! morphology +created_by: wasila.dahdul +creation_date: 2014-09-09T12:40:57Z + +[Term] +id: PATO:0005007 +name: hypsodont +def: "A 3-D shape inhering in a bearer by virtue of the bearer's having dentition characterized by high-crowned teeth and enamel which extends far past the gum line, which provides extra material for wear and tear." [DOI:10.1111/j.1469-185X.2011.00176.x] +comment: Need to include axiom: hypsodont inheres_in some ('tooth crown' and bearer_of 'increased \nheight'). +subset: value_slim +is_a: PATO:0002266 ! 3-D shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:58:01Z + +[Term] +id: PATO:0005008 +name: brachydont +def: "A 3-D shape inhering in a bearer by virtue of the bearer's having dentition characterized by low-crowned teeth. Human teeth are brachydont." [DOI:10.1111/j.1469-185X.2011.00176.x] +comment: Need to include axiom: brachydont inheres_in some ('tooth crown' and bearer_of 'decreased \nheight'). +subset: value_slim +is_a: PATO:0002266 ! 3-D shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:59:35Z + +[Term] +id: PATO:0005009 +name: molariform +def: "A 3-D shape inhering in a bearer by virtue of the bearer's having an entity in the form of a molar tooth." [PATOC:WD] +subset: value_slim +is_a: PATO:0002266 ! 3-D shape +created_by: wasila.dahdul +creation_date: 2014-09-09T13:03:00Z + +[Term] +id: PATO:0005010 +name: plumose +def: "A branched quality inhering in a bearer by virtue of the bearer's having many fine filaments or branches that give a feathery appearance: for example, resembling a feather." [www.oxforddictionaries.com:http\://www.oxforddictionaries.com/us/definition/american_english/plumose] +subset: value_slim +is_a: PATO:0000402 ! branched +created_by: wasila.dahdul +creation_date: 2014-09-25T15:03:17Z + +[Term] +id: PATO:0005011 +name: continuous with +def: "A positional quality inhering in a bearer by virtue of the bearer possessing an uninterrupted or unbroken connection or spatial distribution relative to the position of another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: wasila.dahdul +creation_date: 2014-09-25T15:07:34Z + +[Term] +id: PATO:0005012 +name: complete structure +def: "A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts." [PATOC:WD] +subset: value_slim +is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0005013 ! incomplete structure +created_by: wasila.dahdul +creation_date: 2014-09-25T15:11:47Z + +[Term] +id: PATO:0005013 +name: incomplete structure +def: "A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities." [PATOC:WD] +subset: value_slim +is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0005012 ! complete structure +created_by: wasila.dahdul +creation_date: 2014-09-25T15:12:35Z + +[Term] +id: PATO:0005014 +name: subspherical +def: "A spheroid shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, spherical." [PATOC:WD] +subset: value_slim +is_a: PATO:0001865 ! spheroid +created_by: wasila.dahdul +creation_date: 2014-09-25T15:16:25Z + +[Term] +id: PATO:0005015 +name: tapered size +def: "A size quality inhering in an entity or set of entities in which size increases or decreases along the extent of the entity or set." [PATOC:WD] +subset: value_slim +synonym: "gradient of size" EXACT [] +is_a: PATO:0000117 ! size +created_by: wasila.dahdul +creation_date: 2014-09-25T15:17:51Z + +[Term] +id: PATO:0005016 +name: surrounded by +def: "A positional quality inhering in a bearer by virtue of the bearer's being enclosed on all sides by another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +synonym: "enclosed by" EXACT [] +is_a: PATO:0000140 ! position +created_by: wasila.dahdul +creation_date: 2014-09-25T15:20:55Z + +[Term] +id: PATO:0005017 +name: labiolingually compressed +def: "A quality inhering in a bearer by virtue of the bearer's being compressed from the side facing the lips to the side facing the tongue." [PATOC:WD] +subset: value_slim +is_a: PATO:0002254 ! flattened +created_by: wasila.dahdul +creation_date: 2014-10-02T11:52:09Z + +[Term] +id: PATO:0005018 +name: mesiodistally compressed +def: "A quality inhering in a bearer by virtue of the bearer's being compressed from the side facing the midline of the jaw to the side opposite the midline." [PATOC:WD] +subset: value_slim +is_a: PATO:0002254 ! flattened +created_by: wasila.dahdul +creation_date: 2014-10-02T11:53:52Z + +[Term] +id: PATO:0005019 +name: curved lingually +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the tongue." [PATOC:WD] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: wasila.dahdul +creation_date: 2014-10-02T12:01:16Z + +[Term] +id: PATO:0005020 +name: irregularly shaped +def: "A shape quality inhering on a bearer by virtue of a bearer's shape lacking in pattern or uniformity; for example, it may have sides of different lengths, different curvatures, or unequal angles." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-10-03T10:23:17Z + +[Term] +id: PATO:0005021 +name: unicuspidate +def: "Cuspidate quality inhering in a bearer by virtue of the bearer's possessing a single cusp." [PATOC:WD] +subset: value_slim +is_a: PATO:0001973 ! cuspidate +created_by: wasila.dahdul +creation_date: 2014-10-17T14:14:04Z + +[Term] +id: PATO:0005022 +name: uniform diameter +def: "A diameter that remains constant throughout the extent of an entity." [PATOC:WD] +subset: value_slim +is_a: PATO:0001334 ! diameter +created_by: wasila.dahdul +creation_date: 2014-10-17T14:15:59Z + +[Term] +id: PATO:0005023 +name: parasagittal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is in the parasagittal plane." [PATOC:WD] +subset: value_slim +is_a: PATO:0000133 ! orientation +created_by: wasila.dahdul +creation_date: 2014-10-17T14:21:30Z + +[Term] +id: PATO:0005024 +name: longitudinal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed along the longitudinal or anterior-posterior axis." [PATOC:WD] +subset: value_slim +is_a: PATO:0000133 ! orientation +created_by: wasila.dahdul +creation_date: 2014-10-17T14:24:19Z + +[Term] +id: PATO:0010000 +name: maximally connected +def: "A structural quality inhering in the bearer by virtue of the bearer consisting of a single, maximally connected structure." [GOC:dos] +comment: What counts as maximally connected may be relative to some specification of granularity. +is_a: PATO:0000141 ! structure +created_by: davidos +creation_date: 2014-12-12T08:41:11Z + +[Term] +id: PATO:0010001 +name: disconnected +def: "A structural quality inhering in the bearer by virtue of the bearer consisting of multiple structures lacking any physical connection to each other." [GOC:dos] +is_a: PATO:0000141 ! structure +created_by: davidos +creation_date: 2014-12-12T08:43:17Z + +[Term] +id: PATO:0010002 +name: propagation velocity +def: "The velocity of spatial propagation of a process. Examples include the velocity of propagation of an action potential along an axon." [orcid:0000-0002-7073-9172] +is_a: PATO:0002062 ! physical quality of a process +created_by: dos +creation_date: 2019-07-18T18:24:15Z + +[Term] +id: PATO:0010003 +name: increased propagation velocity +def: "A propagation velocity that is higher than normal." [orcid:0000-0002-7073-9172] +is_a: PATO:0002304 ! increased process quality +is_a: PATO:0010002 ! propagation velocity +intersection_of: PATO:0010002 ! propagation velocity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +created_by: dos +creation_date: 2019-07-18T18:24:25Z + +[Term] +id: PATO:0010004 +name: decreased propagation velocity +def: "A propagation velocity that is lower than normal." [orcid:0000-0002-7073-9172] +is_a: PATO:0002302 ! decreased process quality +is_a: PATO:0010002 ! propagation velocity +intersection_of: PATO:0010002 ! propagation velocity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +created_by: dos +creation_date: 2019-07-18T18:24:36Z + +[Term] +id: PATO:0010005 +name: spatial distribution of a process +def: "A physical quality of a process that is its spatial distribution. For example, bone mineralization follows stereotypical spatial distribution patterns during development, which may be altered in some phenotypes." [orcid:0000-0002-7073-9172] +subset: attribute_slim +is_a: PATO:0002062 ! physical quality of a process +created_by: dos +creation_date: 2019-07-18T18:49:08Z + +[Term] +id: PATO:0015001 +name: absence due to degeneration +def: "Absence due to a degenerative process." [PATOC:PortlandMeetingFeb2015] +subset: absent_slim +subset: value_slim +is_a: PATO:0000462 ! absent +is_a: PATO:0000639 ! degenerate +intersection_of: PATO:0000462 ! absent +intersection_of: PATO:0000639 ! degenerate +created_by: cjm + +[Term] +id: PATO:0015002 +name: process efficacy +def: "The ability of a process to produce its output." [PATOC:PortlandMeetingFeb2015] +subset: attribute_slim +is_a: PATO:0001236 ! process quality +created_by: cjm + +[Term] +id: PATO:0015003 +name: decreased efficacy +def: "A decrease in the ability of a process to produce its output." [PATOC:PortlandMeetingFeb2015] +subset: value_slim +is_a: PATO:0002302 ! decreased process quality +is_a: PATO:0015002 ! process efficacy +intersection_of: PATO:0015002 ! process efficacy +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015004 ! increased efficacy +created_by: cjm + +[Term] +id: PATO:0015004 +name: increased efficacy +def: "A increase in the ability of a process to produce its output." [PATOC:PortlandMeetingFeb2015] +subset: value_slim +is_a: PATO:0002304 ! increased process quality +is_a: PATO:0015002 ! process efficacy +intersection_of: PATO:0015002 ! process efficacy +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015003 ! decreased efficacy +created_by: cjm + +[Term] +id: PATO:0015005 +name: tendrilous +def: "Slender and spirally coiled." [https://en.wiktionary.org/wiki/tendril] +subset: value_slim +synonym: "tendril-like" RELATED [] +synonym: "tendril-shaped" RELATED [] +synonym: "tendrilled" BROAD [] +is_a: PATO:0000052 ! shape +relationship: has_part PATO:0000404 ! coiled +relationship: has_part PATO:0002212 ! slender + +[Term] +id: PATO:0015006 +name: polymeric +def: "A quality inhering in a structure by virtue of it consisting of many of repeated, similar or identical subunits, arranged in some orderly array." [GOC:DOS, https://github.com/pato-ontology/pato/issues/78] +comment: A complete coverage of this domain would subclasses homopolymeric, copolymeric, crystalline. +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0015007 +name: prominence +def: "A quality inhering in a bearer by virtue of the degree to which the bearers stands out or projects beyond a surface or line." [GOC:CJM] +subset: attribute_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0015008 +name: distensibility +def: "A quality inhering in a bearer by virtue of the extent to which the bearer is capable of being stretched or swollen." [GOC:CJM] +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0015009 +name: humidity +def: "A quality inhering in air by virtue of the partial pressure exerted by the bearer's water vapour content." [https://github.com/pato-ontology/pato/issues/90] +subset: attribute_slim +is_a: PATO:0001547 ! quality of a gas + +[Term] +id: PATO:0015010 +name: increased humidity +def: "An increase in humidity." [https://github.com/pato-ontology/pato/issues/90] +subset: value_slim +synonym: "humid" RELATED [] +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0015009 ! humidity +intersection_of: PATO:0015009 ! humidity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015011 ! decreased humidity + +[Term] +id: PATO:0015011 +name: decreased humidity +def: "An decrease in humidity." [https://github.com/pato-ontology/pato/issues/90] +subset: value_slim +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0015009 ! humidity +intersection_of: PATO:0015009 ! humidity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015010 ! increased humidity + +[Term] +id: PATO:0015012 +name: quality of a plasma +def: "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of roughly equal proportions of positively and negatively charged particles, having neither a defined volume nor defined shape, having internal magnetic fields, and being electrically conductive." [https://github.com/pato-ontology/pato/issues/88] +subset: attribute_slim +is_a: PATO:0001547 ! quality of a gas + +[Term] +id: PATO:0015013 +name: degree of illumination +def: "The degree to which the bearer is exposed to visible light." [https://github.com/pato-ontology/pato/issues/89] +subset: attribute_slim +is_a: PATO:0001291 ! electromagnetic (EM) radiation quality + +[Term] +id: PATO:0015014 +name: increased degree of illumination +def: "An increase in illumination." [https://github.com/pato-ontology/pato/issues/89] +subset: value_slim +synonym: "illuminated" RELATED [] +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0015013 ! degree of illumination +intersection_of: PATO:0015013 ! degree of illumination +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015015 ! decreased degree of illumination + +[Term] +id: PATO:0015015 +name: decreased degree of illumination +def: "An decrease in illumination." [https://github.com/pato-ontology/pato/issues/89] +subset: value_slim +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0015013 ! degree of illumination +intersection_of: PATO:0015013 ! degree of illumination +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015014 ! increased degree of illumination + +[Term] +id: PATO:0015016 +name: stepped +def: "Having a shape or form that resembles a step of a stairway (e.g., a ledge or offset margin)." [http://www.thefreedictionary.com/stepped, https://github.com/pato-ontology/pato/issues/82] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0015017 +name: quality of a colloid +def: "A physical quality inhering in an entity by virtue of a portion of the bearer's molecular or polymolecular constituents present in one phase being dispersed in a portion of the bearer's constituents present in another phase." [ENVO:pb, https://github.com/pato-ontology/pato/issues/91, https://goldbook.iupac.org/html/C/C01172.html] +subset: attribute_slim +is_a: PATO:0002198 ! quality of a substance + +[Term] +id: PATO:0015018 +name: quality of an aerosol +def: "A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being suspended in a gas." [ENVO:pb, https://github.com/pato-ontology/pato/issues/91] +subset: attribute_slim +is_a: PATO:0015017 ! quality of a colloid + +[Term] +id: PATO:0015019 +name: C-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter C." [github:mah11, https://github.com/pato-ontology/pato/issues/96] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0015020 +name: J-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter J." [github:mah11, https://github.com/pato-ontology/pato/issues/96] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0015021 +name: combustibility +def: "The propensity of a material to undergo combustion. Combustion encompasses smouldering and flaming combustion. Combustibility is usually applied to solids." [https://en.wikipedia.org/wiki/Combustibility, https://github.com/EnvironmentOntology/envo/issues/384] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0015022 +name: increased combustibility +def: "An increase in combustibility." [] +subset: value_slim +synonym: "combustible" EXACT [] +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0015021 ! combustibility +intersection_of: PATO:0015021 ! combustibility +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015023 ! decreased combustibility + +[Term] +id: PATO:0015023 +name: decreased combustibility +def: "An decrease in combustibility." [] +subset: value_slim +synonym: "noncombustible" RELATED [] +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0015021 ! combustibility +intersection_of: PATO:0015021 ! combustibility +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015022 ! increased combustibility + +[Term] +id: PATO:0015024 +name: increased porosity +def: "An increase in porosity." [https://github.com/pato-ontology/pato/issues/110] +subset: value_slim +is_a: PATO:0000973 ! porosity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000973 ! porosity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal + +[Term] +id: PATO:0015025 +name: decreased porosity +def: "An decrease in porosity." [https://github.com/pato-ontology/pato/issues/110] +subset: value_slim +is_a: PATO:0000973 ! porosity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000973 ! porosity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015024 ! increased porosity + +[Term] +id: PATO:0015026 +name: stability +def: "quality, state, or degree of being stable." [https://github.com/pato-ontology/pato/issues/113] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0015027 +name: increased stability +def: "An increase in stability." [https://github.com/pato-ontology/pato/issues/113] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0015026 ! stability +intersection_of: PATO:0015026 ! stability +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal + +[Term] +id: PATO:0015028 +name: decreased stability +def: "A decrease in stability." [https://github.com/pato-ontology/pato/issues/113] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0015026 ! stability +intersection_of: PATO:0015026 ! stability +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015027 ! increased stability + +[Term] +id: PATO:0015029 +name: quality of a suspension +def: "A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being transiently dispersed in a solid, liquid, or gas before settling due to gravity or centrifugal forces." [ENVO:pb, https://github.com/pato-ontology/pato/issues/91] +subset: attribute_slim +is_a: PATO:0002198 ! quality of a substance + +[Term] +id: PATO:0015030 +name: plume-shaped +def: "A shape that ineres in a bearer by virtue of the bearer's mass being distributed in a feather-like fashion." [https://github.com/pato-ontology/pato/issues/122] +subset: value_slim +synonym: "feather-shaped" EXACT [] +synonym: "plumed" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0020000 +name: genotypic sex +def: "A biological sex quality inhering in an individual based upon genotypic composition of sex chromosomes." [PATOC:MAH] +comment: Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, we have XY, XX, though abnormal XXY, X0, XYY, and other combinations are possible. +is_a: PATO:0000047 ! biological sex +created_by: mah + +[Term] +id: PATO:0020001 +name: male genotypic sex +def: "A biological sex quality inhering in an individual based upon genotypic composition that confers the capability for an organism to differentiate male gonads." [PATOC:MAH] +comment: Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XY, though abnormal XXY and XYY would also result in a male phenotypic outcome. +is_a: PATO:0020000 ! genotypic sex +created_by: mah + +[Term] +id: PATO:0020002 +name: female genotypic sex +def: "A biological sex quality inhering in an individual or a population based upon genotypic composition that confers the capability for an organism to differentiate female gonads." [PATOC:MAH] +comment: Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XX, though abnormal X0 and XXX would also result in a female phenotypic outcome. +is_a: PATO:0020000 ! genotypic sex +created_by: mah + +[Term] +id: PATO:0025000 +name: potability +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be used as a safe means of hydration." [Wikipedia:https\://en.wikipedia.org/wiki/Drinking_water] +synonym: "drinkability" EXACT [] +is_a: PATO:0001018 ! physical quality +created_by: pbuttigieg +creation_date: 2015-09-01T16:16:44Z + +[Term] +id: PATO:0025001 +name: non-potable +def: "A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration." [Wikipedia:https\://en.wikipedia.org/wiki/Drinking_water] +synonym: "undrinkable" EXACT [] +is_a: PATO:0025000 ! potability +disjoint_from: PATO:0025002 ! potable +relationship: is_opposite_of PATO:0025002 ! potable +created_by: pbuttigieg +creation_date: 2015-09-01T16:18:57Z + +[Term] +id: PATO:0025002 +name: potable +def: "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration." [Wikipedia:https\://en.wikipedia.org/wiki/Drinking_water] +synonym: "drinkable" EXACT [] +is_a: PATO:0025000 ! potability +relationship: is_opposite_of PATO:0025001 ! non-potable +created_by: pbuttigieg +creation_date: 2015-09-01T16:19:02Z + +[Term] +id: PATO:0030000 +name: anterioralized +def: "A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some or all of what are normally posterior structures." [PATOC:EJS] +is_a: PATO:0000646 ! malformed +created_by: segerdel + +[Term] +id: PATO:0030001 +name: dorsalized +def: "A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally dorsal structures and missing some or all of what are normally ventral structures." [PATOC:EJS] +is_a: PATO:0000646 ! malformed +created_by: segerdel + +[Term] +id: PATO:0030002 +name: posterioralized +def: "A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally posterior structures and missing some or all of what are normally anterior structures." [PATOC:EJS] +is_a: PATO:0000646 ! malformed +created_by: segerdel + +[Term] +id: PATO:0030003 +name: ventralized +def: "A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally ventral structures and missing some or all of what are normally dorsal structures." [PATOC:EJS] +is_a: PATO:0000646 ! malformed +created_by: segerdel + +[Term] +id: PATO:0030004 +name: partially anterioralized +def: "An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some but not all of what are normally posterior structures." [PATOC:EJS] +is_a: PATO:0030000 ! anterioralized +created_by: segerdel + +[Term] +id: PATO:0030005 +name: partially dorsalized +def: "A dorsalized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally dorsal structures and missing some but not all of what are normally ventral structures." [PATOC:EJS] +is_a: PATO:0030001 ! dorsalized +created_by: segerdel + +[Term] +id: PATO:0030006 +name: partially posterioralized +def: "A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally posterior structures and missing some but not all of what are normally anterior structures." [PATOC:EJS] +is_a: PATO:0030002 ! posterioralized +created_by: segerdel + +[Term] +id: PATO:0030007 +name: partially ventralized +def: "A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally ventral structures and missing some but not all of what are normally dorsal structures." [PATOC:EJS] +is_a: PATO:0030003 ! ventralized +created_by: segerdel + +[Term] +id: PATO:0040000 +name: heterotaxic +def: "An oriented quality inhering in a bearer by virtue of the bearer's being abnormally placed or arranged." [http://medical-dictionary.thefreedictionary.com/heterotaxic] +is_a: PATO:0000625 ! inverted +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-05-21T22:44:38Z xsd:dateTime + +[Term] +id: PATO:0040001 +name: ring-shaped +def: "Shaped like a ring" [https://orcid.org/0000-0002-6601-2165] +synonym: "annular" EXACT [] +is_a: PATO:0000947 ! elliptic +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T03:56:53Z xsd:dateTime + +[Term] +id: PATO:0040002 +name: originates from +def: "A positional quality inhering in a bearer by virtue of some aspect of that bearer beginning from a position on another entity." [] +subset: relational_slim +is_a: PATO:0000140 ! position +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T04:10:53Z xsd:dateTime + +[Term] +id: PATO:0040003 +name: pathogenicity +def: "The ability of a pathogen to produce an infectious disease or disorder in an another organism." [https://orcid.org/0000-0001-8941-3984] +is_a: PATO:0001995 ! organismal quality +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:24:52Z xsd:dateTime + +[Term] +id: PATO:0040004 +name: plush +def: "A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness." [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0003-4606-0597] +is_a: PATO:0000150 ! texture +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:39:30Z xsd:dateTime + +[Term] +id: PATO:0040005 +name: posteroventral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally." [https://orcid.org/0000-0003-3162-7490] +synonym: "posteroventrally oriented" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T22:54:16Z xsd:dateTime + +[Term] +id: PATO:0040006 +name: crown like +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown." [https://orcid.org/0000-0003-3162-7490] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:09:59Z xsd:dateTime + +[Term] +id: PATO:0040007 +name: shell shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell." [https://orcid.org/0000-0003-3162-7490] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:12:47Z xsd:dateTime + +[Term] +id: PATO:0040008 +name: fringed +def: "A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/fringe] +is_a: PATO:0002267 ! edge shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:15:10Z xsd:dateTime + +[Term] +id: PATO:0040009 +name: bowl shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl." [https://orcid.org/0000-0003-3162-7490] +is_a: PATO:0002008 ! concave 3-D shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:17:01Z xsd:dateTime + +[Term] +id: PATO:0040010 +name: mobile relative to +def: "Mobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] +comment: For example, distinct anteroposterior mobility of palatine relative to mesethmoid. +is_a: PATO:0000004 ! mobility +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:20:08Z xsd:dateTime + +[Term] +id: PATO:0040011 +name: immobile relative to +def: "Immobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] +comment: For example: distinct anteroposterior immobility of palatine relative to mesethmoid. +is_a: PATO:0000004 ! mobility +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:21:07Z xsd:dateTime + +[Term] +id: PATO:0040012 +name: plug shaped +def: "A shape that is in the form of a plug, being tube-like and expanded on one end." [https://orcid.org/0000-0003-3162-7490] +synonym: "plug like" EXACT [] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:24:41Z xsd:dateTime + +[Term] +id: PATO:0040013 +name: dorsomedial orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially." [https://orcid.org/0000-0003-3162-7490] +synonym: "dorsomedially directed" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:27:57Z xsd:dateTime + +[Term] +id: PATO:0040014 +name: band shaped +def: "A shape that is in the form of a narrow strip encircling an object." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/band] +synonym: "band like" EXACT [] +synonym: "band-like" EXACT [] +synonym: "strip like" EXACT [] +synonym: "strip-like" EXACT [] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:31:51Z xsd:dateTime + +[Term] +id: PATO:0040015 +name: trough shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling that of a trough, being narrow, long, and boxlike in shape." [http://www.dictionary.com/browse/trough, https://orcid.org/0000-0003-3162-7490] +synonym: "trough like" EXACT [] +synonym: "trough-like" EXACT [] +synonym: "trough-shaped" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:35:51Z xsd:dateTime + +[Term] +id: PATO:0040016 +name: pentagonal +def: "A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/pentagonal] +is_a: PATO:0002006 ! 2-D shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:39:48Z xsd:dateTime + +[Term] +id: PATO:0040017 +name: dysplastic growth +def: "A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal." [https://www.cancer.gov/publications/dictionaries/cancer-terms/def/dysplasia] +synonym: "dysgenesis" NARROW [] +is_a: PATO:0001433 ! growth quality of occurrent +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T19:01:51Z xsd:dateTime + +[Term] +id: PATO:0040019 +name: fibrotic +def: "Fibrosis is the formation of excess fibrous connective tissue in an organ or tissue in a reparative or reactive process." [https://en.wikipedia.org/wiki/Fibrosis] +is_a: PATO:0000025 ! composition +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T23:16:17Z xsd:dateTime + +[Term] +id: PATO:0040020 +name: spayed female +def: "Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal." [] +is_a: PATO:0000383 ! female +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-16T22:52:49Z xsd:dateTime + +[Term] +id: PATO:0040025 +name: lesioned +def: "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present." [NCIT:C3824] +is_a: PATO:0000141 ! structure +created_by: http://orcid.org/0000-0001-5208-3432 + +[Term] +id: PATO:0045000 +name: normal rate +def: "A rate which is relatively normal." [] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000161 ! rate +is_a: PATO:0045073 ! normal process quality +intersection_of: PATO:0000161 ! rate +intersection_of: has_relative_magnitude PATO:0000461 ! normal + +[Term] +id: PATO:0045001 +name: normal object quality +def: "A quality of an object that has a value that is normal or average." [] +is_a: PATO:0001241 ! physical object quality +intersection_of: PATO:0001241 ! physical object quality +intersection_of: has_relative_magnitude PATO:0000461 ! normal +relationship: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-21T14:11:01Z + +[Term] +id: PATO:0045002 +name: normal acidity +def: "An acidity which is relatively normal." [] +subset: value_slim +is_a: PATO:0001842 ! acidity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001842 ! acidity +intersection_of: has_relative_magnitude PATO:0000461 ! normal + +[Term] +id: PATO:0045003 +name: normal adhesivity +def: "A adhesivity which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0002331 ! adhesive +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002331 ! adhesive +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045004 +name: normal affinity +def: "An affinity which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0002070 ! affinity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002070 ! affinity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045005 +name: normal age +def: "An age which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0000011 ! age +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000011 ! age +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045006 +name: normal avidity +def: "An avidity which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002073 ! avidity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002073 ! avidity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045007 +name: normal behavioural activity +def: "A behavioural quality of a process inhering in a bearer by virtue of the bearer's exhibiting normal or average activity." [] +subset: value_slim +is_a: PATO:0001707 ! behavioural active +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001707 ! behavioural active +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045008 +name: normal cellular motility +def: "A cellular motility which is normal or average." [] +subset: value_slim +is_a: PATO:0001488 ! cellular motility +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001488 ! cellular motility +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045009 +name: normal coiling +def: "A coiling which is normal or average." [] +subset: cell_quality +subset: value_slim +is_a: PATO:0000404 ! coiled +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000404 ! coiled +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045010 +name: normal concentration +def: "A concentration which is relatively normal or average." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0001159 ! concentrated +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001159 ! concentrated +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045011 +name: normal contractility +def: "A contractility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001690 ! contractile +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001690 ! contractile +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045012 +name: normal coordination +def: "A coordination which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000769 ! coordinated +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000769 ! coordinated +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045013 +name: normal curvature +def: "A curvature which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0000406 ! curved +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000406 ! curved +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045014 +name: normal distance +def: "A distance which is relatively normal or average." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0000040 ! distance +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000040 ! distance +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045015 +name: normal efficiency +def: "An efficiency which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0001678 ! efficient +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001678 ! efficient +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045016 +name: normal elasticity +def: "An elasticity which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0001171 ! elastic +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001171 ! elastic +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045017 +name: normal fecundity +def: "A fecundity which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000273 ! fecundity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000273 ! fecundity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045018 +name: normal female fertility +def: "A female fertility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000888 ! female fertile +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000888 ! female fertile +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045019 +name: normal female receptivity +def: "A female receptivity which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001720 ! female receptivity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001720 ! female receptivity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045020 +name: normal fertility +def: "A fertility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000955 ! fertile +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000955 ! fertile +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045021 +name: normal flexibility +def: "A flexibility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001544 ! flexible +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001544 ! flexible +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045022 +name: normal fluid flow +def: "A fluid flow which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0002243 ! fluid flow rate +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002243 ! fluid flow rate +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045023 +name: normal fluorescence +def: "A fluorescence which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0001290 ! fluorescent +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001290 ! fluorescent +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045024 +name: normal force +def: "A force which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0001035 ! force +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001035 ! force +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045025 +name: normal fragility +def: "A fragility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001362 ! fragile +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001362 ! fragile +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045026 +name: normal life span +def: "A life span which is relatively normal or average." [] +is_a: PATO:0000050 ! life span +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000050 ! life span +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045027 +name: normal magnetism +def: "A magnetism which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001685 ! magnetic +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001685 ! magnetic +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045028 +name: normal male fertility +def: "A male fertility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000891 ! male fertile +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000891 ! male fertile +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045029 +name: normal male receptivity +def: "A male receptivity which is relatively normal or average." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0001721 ! male receptivity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001721 ! male receptivity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045030 +name: normal mass +def: "A mass which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0000125 ! mass +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000125 ! mass +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045031 +name: normal mass density +def: "A density which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0001164 ! dense +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001164 ! dense +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045032 +name: normal mobility +def: "A mobility which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0000299 ! mobile +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000299 ! mobile +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045033 +name: normal odor +def: "An odor quality of having relatively normal or average odor." [] +subset: value_slim +is_a: PATO:0001331 ! odorous +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001331 ! odorous +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045034 +name: normal osmolality +def: "An osmolality which is relatively normal or average odor." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0002027 ! osmolality +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002027 ! osmolality +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045035 +name: normal osmolarity +def: "An osmolarity which is relatively normal or average odor." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0001655 ! osmolarity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001655 ! osmolarity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045036 +name: normal permeability +def: "A permeability which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000982 ! permeable +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000982 ! permeable +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045037 +name: normal phosphorylation +def: "A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a normal or average extent." [] +subset: value_slim +is_a: PATO:0002220 ! phosphorylated +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002220 ! phosphorylated +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045038 +name: normal photosensitivity +def: "A photosensitivity which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000547 ! photosensitive +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000547 ! photosensitive +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045039 +name: normal pigmentation +def: "A degree of pigmentation quality which is relatively normal or average" [] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002248 ! pigmented +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002248 ! pigmented +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045040 +name: normal position +def: "A position which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000140 ! position +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000140 ! position +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045041 +name: normal angle to +def: "An angle which is relatively normal or average" [] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle +is_a: PATO:0045040 ! normal position +intersection_of: PATO:0002326 ! angle +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045042 +name: normal distribution +def: "A distribution which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001566 ! distributed +is_a: PATO:0045040 ! normal position +intersection_of: PATO:0001566 ! distributed +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045043 +name: normal elevation +def: "An elevation which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001687 ! elevation +is_a: PATO:0045040 ! normal position +intersection_of: PATO:0001687 ! elevation +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045044 +name: normal pressure +def: "A pressure which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001025 ! pressure +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001025 ! pressure +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045045 +name: normal radioactivity +def: "A radioactivity which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001741 ! radioactive +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001741 ! radioactive +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045046 +name: normal radiopacity +def: "A radiopacity which is relatively normal or average" [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002136 ! radiopacity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002136 ! radiopacity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045047 +name: normal resistance to +def: "A resistance to a stimulus which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001178 ! resistant to +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001178 ! resistant to +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045048 +name: normal sensitivity to irradiation +def: "A sensitivity to irradiation which is relatively normal or average" [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001806 ! sensitivity to irradiation +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001806 ! sensitivity to irradiation +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045049 +name: normal sensitivity toward +def: "A sensitivity toward an external stimulus which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000516 ! sensitive toward +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000516 ! sensitive toward +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045050 +name: normal size +def: "A size quality which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000117 ! size +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000117 ! size +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045051 +name: normal area +def: "An area which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001323 ! area +is_a: PATO:0045050 ! normal size +intersection_of: PATO:0001323 ! area +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045052 +name: normal depth +def: "A depth quality which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001595 ! depth +is_a: PATO:0045050 ! normal size +intersection_of: PATO:0001595 ! depth +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045053 +name: normal height +def: "A height which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000119 ! height +is_a: PATO:0045050 ! normal size +intersection_of: PATO:0000119 ! height +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045054 +name: normal length +def: "A length quality which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000122 ! length +is_a: PATO:0045050 ! normal size +intersection_of: PATO:0000122 ! length +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045055 +name: normal diameter +def: "A diameter which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001334 ! diameter +is_a: PATO:0045054 ! normal length +intersection_of: PATO:0001334 ! diameter +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045056 +name: normal anterior-posterior diameter +def: "An anterior-posterior diameter which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0002041 ! anterior-posterior diameter +is_a: PATO:0045055 ! normal diameter +intersection_of: PATO:0002041 ! anterior-posterior diameter +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045057 +name: normal perimeter +def: "A perimeter which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001711 ! perimeter +is_a: PATO:0045054 ! normal length +intersection_of: PATO:0001711 ! perimeter +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045058 +name: normal circumference +def: "A circumference which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001648 ! circumference +is_a: PATO:0045057 ! normal perimeter +intersection_of: PATO:0001648 ! circumference +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045059 +name: normal thickness +def: "A thickness which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000915 ! thickness +is_a: PATO:0045050 ! normal size +intersection_of: PATO:0000915 ! thickness +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045060 +name: normal volume +def: "A volume which is relatively normal or average" [] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000918 ! volume +is_a: PATO:0045050 ! normal size +intersection_of: PATO:0000918 ! volume +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045061 +name: normal width +def: "A width which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000921 ! width +is_a: PATO:0045050 ! normal size +intersection_of: PATO:0000921 ! width +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045062 +name: normal solubility +def: "A solubility which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001537 ! soluble in +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001537 ! soluble in +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045063 +name: normal speed +def: "A speed which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000008 ! speed +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000008 ! speed +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045064 +name: normal strength +def: "A strength which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001230 ! strength +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001230 ! strength +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045065 +name: normal fatigability +def: "A fatigability which is relatively normal or average" [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001815 ! fatigability +is_a: PATO:0045064 ! normal strength +intersection_of: PATO:0001815 ! fatigability +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045066 +name: normal susceptibility toward +def: "A susceptibility toward an external stimulus which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001152 ! susceptible toward +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001152 ! susceptible toward +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045067 +name: normal temperature +def: "A temperature which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000146 ! temperature +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000146 ! temperature +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045068 +name: normal tendency +def: "A tendency which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0002360 ! tendency +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002360 ! tendency +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045069 +name: normal threshold +def: "A threshold which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000152 ! threshold +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000152 ! threshold +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045070 +name: normal tolerance to +def: "A tolerance to an external stimulus which is relatively normal or average" [] +subset: relational_slim +subset: value_slim +is_a: PATO:0000515 ! tolerant to +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000515 ! tolerant to +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045071 +name: normal tonicity +def: "A tonicity which is relatively normal or average" [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001439 ! tonicity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001439 ! tonicity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045072 +name: normal turgor +def: "A turgor which is relatively normal or average" [] +subset: cell_quality +subset: value_slim +is_a: PATO:0001620 ! turgor +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001620 ! turgor +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045073 +name: normal process quality +def: "A quality of aprocess that has a value that is normal or average." [] +is_a: PATO:0001236 ! process quality +intersection_of: PATO:0001236 ! process quality +intersection_of: has_relative_magnitude PATO:0000461 ! normal +relationship: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-21T14:11:01Z + +[Term] +id: PATO:0045074 +name: normal variability +def: "A variability which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001227 ! variant +intersection_of: PATO:0001227 ! variant +intersection_of: has_relative_magnitude PATO:0000461 ! normal +relationship: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045075 +name: normal variability of color +def: "A variability which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001615 ! variant color +intersection_of: PATO:0001615 ! variant color +intersection_of: has_relative_magnitude PATO:0000461 ! normal +relationship: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045076 +name: normal variability of rate +def: "A variability of rate which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001586 ! variability of rate +intersection_of: PATO:0001586 ! variability of rate +intersection_of: has_relative_magnitude PATO:0000461 ! normal +relationship: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045077 +name: normal variability of size +def: "A variability of size which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001956 ! variability of size +intersection_of: PATO:0001956 ! variability of size +intersection_of: has_relative_magnitude PATO:0000461 ! normal +relationship: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045078 +name: normal variability of temperature +def: "A variability of temperature which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001314 ! variant temperature +intersection_of: PATO:0001314 ! variant temperature +intersection_of: has_relative_magnitude PATO:0000461 ! normal +relationship: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045079 +name: normal velocity +def: "A velocity which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0002242 ! velocity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002242 ! velocity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045080 +name: normal virulence +def: "A virulence which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0002146 ! virulence +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002146 ! virulence +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045081 +name: normal viscosity +def: "A viscosity which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000998 ! viscous +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000998 ! viscous +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045082 +name: normal waxiness +def: "A waxiness which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0002381 ! waxiness +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002381 ! waxiness +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045083 +name: normal wetness +def: "A wetness which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001823 ! wet +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001823 ! wet +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045084 +name: normal duration +def: "A duration quality of a process which is relatively normal." [] +subset: value_slim +is_a: PATO:0001309 ! duration +is_a: PATO:0045073 ! normal process quality +intersection_of: PATO:0001309 ! duration +intersection_of: has_relative_magnitude PATO:0000461 ! normal + +[Term] +id: PATO:0045085 +name: normal duration of temperature +def: "A duration quality of temperature quality of a process which is relatively normal." [] +subset: value_slim +is_a: PATO:0001310 ! duration of temperature +is_a: PATO:0045084 ! normal duration +intersection_of: PATO:0001310 ! duration of temperature +intersection_of: has_relative_magnitude PATO:0000461 ! normal + +[Term] +id: PATO:0045086 +name: normal occurrence +def: "An occurrence which is relatively normal." [] +subset: value_slim +is_a: PATO:0000057 ! occurrence +is_a: PATO:0045073 ! normal process quality +intersection_of: PATO:0000057 ! occurrence +intersection_of: has_relative_magnitude PATO:0000461 ! normal + +[Term] +id: PATO:0045087 +name: normal frequency +def: "A frequency which is relatively normal." [] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000044 ! frequency +is_a: PATO:0045000 ! normal rate +intersection_of: PATO:0000044 ! frequency +intersection_of: has_relative_magnitude PATO:0000461 ! normal + +[Term] +id: PATO:0045088 +name: normal sensitivity of a process +def: "A sensitivity of a process which is relatively normal." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0001457 ! sensitivity of a process +is_a: PATO:0045073 ! normal process quality +intersection_of: PATO:0001457 ! sensitivity of a process +intersection_of: has_relative_magnitude PATO:0000461 ! normal + +[Term] +id: PATO:0045089 +name: normal sensitivity of a process to oxygen +def: "A sensitivity of occurrent to oxygen which is relatively normal." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001459 ! aerobic (for occurrence) +is_a: PATO:0045088 ! normal sensitivity of a process +intersection_of: PATO:0001459 ! aerobic (for occurrence) +intersection_of: has_relative_magnitude PATO:0000461 ! normal + +[Term] +id: PATO:0045090 +name: cardinal direction +def: "The four cardinal directions or cardinal points are the directions north, east, south, and west, commonly denoted by their initials, N, E, S, W. East and west are at right angles to north and south, with east being in the clockwise direction of rotation from north and west being directly opposite east." [Wikipedia:http\://en.wikipedia.org/wiki/Cardinal_direction] +subset: value_slim +is_a: PATO:0000039 ! direction +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045091 +name: north +def: "North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west." [Wikipedia:http\://en.wikipedia.org/wiki/North] +subset: value_slim +is_a: PATO:0045090 ! cardinal direction +relationship: is_opposite_of PATO:0045093 ! south +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045092 +name: east +def: "East is one of the four cardinal directions or points of the compass. It is the opposite direction from west." [Wikipedia:http\://en.wikipedia.org/wiki/East] +subset: value_slim +is_a: PATO:0045090 ! cardinal direction +relationship: is_opposite_of PATO:0045094 ! west +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045093 +name: south +def: "South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west." [Wikipedia:http\://en.wikipedia.org/wiki/South] +subset: value_slim +is_a: PATO:0045090 ! cardinal direction +relationship: is_opposite_of PATO:0045091 ! north +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045094 +name: west +def: "West is one of the four cardinal directions or points of the compass. It is the opposite direction from east." [Wikipedia:http\://en.wikipedia.org/wiki/West] +subset: value_slim +is_a: PATO:0045090 ! cardinal direction +relationship: is_opposite_of PATO:0045092 ! east +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0050000 +name: rate of occurence +def: "The number of repeated events per unit time, occurring in a repeating series. (e.g. the number of heart beats occurring over 1 minute)" [https://orcid.org/0000-0002-9943-9018] +is_a: PATO:0000161 ! rate + +[Term] +id: PATO:0050001 +name: rate of continuous process +def: "The rate of output of a continuous process. Example include: growth rate, cell migration rate, enzyme reaction rate." [https://orcid.org/0000-0002-9943-9018] +is_a: PATO:0000161 ! rate + +[Term] +id: PATO:0055001 +name: decreased spatial extent of a process +def: "A spatial distribution of a process in which the process occupies a smaller length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type." [orcid:0000-0003-4148-4606] +is_a: PATO:0002302 ! decreased process quality +is_a: PATO:0010005 ! spatial distribution of a process +intersection_of: PATO:0010005 ! spatial distribution of a process +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +created_by: midori +creation_date: 2019-07-29T14:22:24Z + +[Term] +id: PATO:0055002 +name: increased spatial extent of a process +def: "A spatial distribution of a process in which the process occupies a greater length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type." [https://orcid.org/0000-0003-4148-4606] +is_a: PATO:0002304 ! increased process quality +is_a: PATO:0010005 ! spatial distribution of a process +intersection_of: PATO:0010005 ! spatial distribution of a process +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +created_by: midori +creation_date: 2019-07-29T14:23:31Z + +[Term] +id: PATO:0060001 +name: sex-specific +def: "A quality inhering in a bearer by virtue of the bearer's being present in one sex and absent from the other in members of the same species." [http://orcid.org/0000-0002-1373-1705] +is_a: PATO:0002451 ! sexually dimorphic +created_by: http://orcid.org/0000-0002-1373-1705 +creation_date: 2019-08-23T08:46:30Z + +[Term] +id: PATO:0060002 +name: male-specific +def: "A quality inhering in a bearer by virtue of the bearer's being present in males and absent from females in members of the same species." [http://orcid.org/0000-0002-1373-1705] +is_a: PATO:0060001 ! sex-specific +created_by: http://orcid.org/0000-0002-1373-1705 +creation_date: 2019-08-23T08:49:59Z + +[Term] +id: PATO:0060003 +name: female-specific +def: "A quality inhering in a bearer by virtue of the bearer's being present in females and absent from males in members of the same species." [http://orcid.org/0000-0002-1373-1705] +is_a: PATO:0060001 ! sex-specific +created_by: http://orcid.org/0000-0002-1373-1705 +creation_date: 2019-08-23T08:51:22Z + +[Typedef] +id: BFO:0000062 +name: preceded by +def: "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] +property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:preceded_by xsd:string +property_value: IAO:0000111 "preceded by" xsd:string +property_value: IAO:0000116 "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." xsd:string +property_value: IAO:0000118 "is preceded by" xsd:string +property_value: IAO:0000118 "preceded_by" xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent +holds_over_chain: part_of BFO:0000062 +is_transitive: true +is_a: RO:0002086 ! ends after +inverse_of: BFO:0000063 ! precedes + +[Typedef] +id: BFO:0000063 +name: precedes +def: "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] +property_value: IAO:0000111 "precedes" xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent +holds_over_chain: part_of BFO:0000063 +is_transitive: true +is_a: RO:0002222 ! temporally related to + +[Typedef] +id: BFO:0000066 +name: occurs in +def: "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" [] +comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant +property_value: IAO:0000111 "occurs in" xsd:string +property_value: IAO:0000118 "occurs_in" xsd:string +property_value: IAO:0000118 "unfolds in" xsd:string +property_value: IAO:0000118 "unfolds_in" xsd:string +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl +domain: BFO:0000003 ! occurrent +range: BFO:0000004 ! independent continuant +holds_over_chain: part_of BFO:0000066 +inverse_of: BFO:0000067 ! contains process +transitive_over: part_of ! part of + +[Typedef] +id: BFO:0000067 +name: contains process +def: "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" [] +comment: Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant +property_value: IAO:0000111 "site of" xsd:string +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Typedef] +id: RO:0000052 +name: inheres in +def: "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence" [] +property_value: IAO:0000111 "inheres in" xsd:string +property_value: IAO:0000112 "this fragility inheres in this vase" xsd:string +property_value: IAO:0000112 "this red color inheres in this apple" xsd:string +property_value: IAO:0000116 "A dependent inheres in its bearer at all times for which the dependent exists." xsd:string +property_value: IAO:0000118 "inheres_in" xsd:string +property_value: RO:0001900 RO:0001901 +is_a: RO:0002314 +inverse_of: RO:0000053 ! bearer of + +[Typedef] +id: RO:0000053 +name: bearer of +def: "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence" [] +property_value: IAO:0000111 "bearer of" xsd:string +property_value: IAO:0000112 "this apple is bearer of this red color" xsd:string +property_value: IAO:0000112 "this vase is bearer of this fragility" xsd:string +property_value: IAO:0000116 "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." xsd:string +property_value: IAO:0000118 "bearer_of" xsd:string +property_value: IAO:0000118 "is bearer of" xsd:string +property_value: RO:0001900 RO:0001901 +range: BFO:0000020 ! specifically dependent continuant + +[Typedef] +id: RO:0000056 +name: participates in +def: "a relation between a continuant and a process, in which the continuant is somehow involved in the process" [] +property_value: IAO:0000111 "participates in" xsd:string +property_value: IAO:0000112 "this blood clot participates in this blood coagulation" xsd:string +property_value: IAO:0000112 "this input material (or this output material) participates in this process" xsd:string +property_value: IAO:0000112 "this investigator participates in this investigation" xsd:string +property_value: IAO:0000118 "participates_in" xsd:string +domain: BFO:0000002 ! continuant +range: BFO:0000003 ! occurrent +inverse_of: RO:0000057 ! has participant + +[Typedef] +id: RO:0000057 +name: has participant +def: "a relation between a process and a continuant, in which the continuant is somehow involved in the process" [] +property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:has_participant xsd:string +property_value: IAO:0000111 "has participant" xsd:string +property_value: IAO:0000112 "this blood coagulation has participant this blood clot" xsd:string +property_value: IAO:0000112 "this investigation has participant this investigator" xsd:string +property_value: IAO:0000112 "this process has participant this input material (or this output material)" xsd:string +property_value: IAO:0000116 "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." xsd:string +property_value: IAO:0000118 "has_participant" xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000002 ! continuant +holds_over_chain: has_part RO:0000057 + +[Typedef] +id: RO:0002013 +is_a: RO:0002017 +is_a: RO:0002334 + +[Typedef] +id: RO:0002014 +is_a: RO:0002013 +is_a: RO:0002335 + +[Typedef] +id: RO:0002015 +is_a: RO:0002013 +is_a: RO:0002336 + +[Typedef] +id: RO:0002017 +is_a: RO:0002018 + +[Typedef] +id: RO:0002018 +domain: BFO:0000015 ! process +range: BFO:0000015 ! process +is_a: RO:0002180 + +[Typedef] +id: RO:0002019 +domain: GO:0004872 +is_a: RO:0002233 + +[Typedef] +id: RO:0002022 +is_a: RO:0002334 +inverse_of: RO:0002578 + +[Typedef] +id: RO:0002023 +is_a: RO:0002022 +inverse_of: RO:0002630 + +[Typedef] +id: RO:0002024 +is_a: RO:0002022 +inverse_of: RO:0002629 + +[Typedef] +id: RO:0002025 +is_functional: true +is_a: RO:0002017 +is_a: RO:0002211 + +[Typedef] +id: RO:0002086 +name: ends after +comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +is_transitive: true +is_a: RO:0002222 ! temporally related to + +[Typedef] +id: RO:0002087 +name: immediately preceded by +comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000118 "starts_at_end_of" xsd:string +is_a: BFO:0000062 ! preceded by +inverse_of: RO:0002090 ! immediately precedes + +[Typedef] +id: RO:0002090 +name: immediately precedes +comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000118 "ends_at_start_of" xsd:string +property_value: IAO:0000118 "meets" xsd:string +is_a: BFO:0000063 ! precedes + +[Typedef] +id: RO:0002131 +holds_over_chain: has_part part_of {http://purl.obolibrary.org/obo/RO_0002582="true"} +holds_over_chain: has_part RO:0002131 +holds_over_chain: part_of part_of +is_a: RO:0002323 + +[Typedef] +id: RO:0002180 +is_a: has_part ! has part + +[Typedef] +id: RO:0002211 +domain: BFO:0000015 ! process +range: BFO:0000015 ! process +holds_over_chain: RO:0002578 RO:0002578 +is_transitive: true +is_a: RO:0002411 +inverse_of: RO:0002334 + +[Typedef] +id: RO:0002212 +is_a: RO:0002211 +is_a: RO:0002305 +inverse_of: RO:0002335 + +[Typedef] +id: RO:0002213 +holds_over_chain: RO:0002212 RO:0002212 +is_transitive: true +is_a: RO:0002211 +is_a: RO:0002304 +inverse_of: RO:0002336 + +[Typedef] +id: RO:0002215 +domain: BFO:0000004 ! independent continuant +range: BFO:0000015 ! process +is_a: RO:0002216 + +[Typedef] +id: RO:0002216 +holds_over_chain: RO:0002215 part_of {http://purl.obolibrary.org/obo/RO_0002582="true"} +is_a: RO:0002328 +is_a: RO:0002500 + +[Typedef] +id: RO:0002217 +is_a: RO:0000056 ! participates in +inverse_of: RO:0002218 + +[Typedef] +id: RO:0002218 +is_a: RO:0000057 ! has participant + +[Typedef] +id: RO:0002222 +name: temporally related to +comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000119 https://en.wikipedia.org/wiki/Allen%27s_interval_algebra +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent + +[Typedef] +id: RO:0002233 +domain: BFO:0000015 ! process +range: BFO:0000040 ! material entity +is_a: RO:0000057 ! has participant +inverse_of: RO:0002352 + +[Typedef] +id: RO:0002263 +holds_over_chain: RO:0002327 RO:0002411 +is_a: RO:0002264 + +[Typedef] +id: RO:0002264 +holds_over_chain: RO:0002327 RO:0002418 +is_a: RO:0002500 + +[Typedef] +id: RO:0002304 +is_a: RO:0002411 +is_a: RO:0004047 + +[Typedef] +id: RO:0002305 +is_a: RO:0002411 +is_a: RO:0004046 + +[Typedef] +id: RO:0002314 +holds_over_chain: RO:0000052 part_of {http://purl.obolibrary.org/obo/RO_0002582="true"} +is_a: RO:0002502 +transitive_over: part_of ! part of + +[Typedef] +id: RO:0002327 +is_a: RO:0002215 +inverse_of: RO:0002333 +transitive_over: has_part ! has part +transitive_over: RO:0002017 + +[Typedef] +id: RO:0002329 +holds_over_chain: part_of RO:0002215 {http://purl.obolibrary.org/obo/RO_0002581="true"} +is_a: RO:0002328 + +[Typedef] +id: RO:0002331 +holds_over_chain: RO:0002327 part_of +is_a: RO:0002217 +is_a: RO:0002431 +transitive_over: part_of ! part of + +[Typedef] +id: RO:0002333 +is_a: RO:0000057 ! has participant +is_a: RO:0002328 + +[Typedef] +id: RO:0002334 +domain: BFO:0000015 ! process +range: BFO:0000015 ! process +is_transitive: true +is_a: RO:0002427 + +[Typedef] +id: RO:0002335 +is_a: RO:0002334 + +[Typedef] +id: RO:0002336 +is_a: RO:0002334 + +[Typedef] +id: RO:0002352 +is_a: RO:0000056 ! participates in +is_a: RO:0002328 + +[Typedef] +id: RO:0002404 +is_a: BFO:0000062 ! preceded by +is_a: RO:0002427 +inverse_of: RO:0002411 + +[Typedef] +id: RO:0002405 +is_a: RO:0002087 ! immediately preceded by +is_a: RO:0002404 +inverse_of: RO:0002412 + +[Typedef] +id: RO:0002411 +is_transitive: true +is_a: BFO:0000063 ! precedes +is_a: RO:0002418 + +[Typedef] +id: RO:0002412 +is_a: RO:0002090 ! immediately precedes +is_a: RO:0002411 + +[Typedef] +id: RO:0002418 +is_transitive: true +is_a: RO:0002501 +inverse_of: RO:0002427 + +[Typedef] +id: RO:0002427 +is_transitive: true +is_a: RO:0002501 + +[Typedef] +id: RO:0002428 +holds_over_chain: RO:0002327 RO:0002211 +holds_over_chain: RO:0002331 RO:0002211 +is_a: RO:0002263 +is_a: RO:0002431 + +[Typedef] +id: RO:0002429 +holds_over_chain: RO:0002327 RO:0002213 +holds_over_chain: RO:0002331 RO:0002213 +is_a: RO:0002428 + +[Typedef] +id: RO:0002430 +holds_over_chain: RO:0002327 RO:0002212 +holds_over_chain: RO:0002331 RO:0002212 +is_a: RO:0002428 + +[Typedef] +id: RO:0002431 +is_a: RO:0002264 +is_a: RO:0002328 +is_a: RO:0002500 + +[Typedef] +id: RO:0002432 +holds_over_chain: RO:0002327 BFO:0000066 {http://purl.obolibrary.org/obo/RO_0002581="true"} +is_a: RO:0002131 +is_a: RO:0002328 + +[Typedef] +id: RO:0002434 +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity +is_symmetric: true + +[Typedef] +id: RO:0002436 +is_symmetric: true +is_a: RO:0002434 + +[Typedef] +id: RO:0002447 +is_a: RO:0002436 + +[Typedef] +id: RO:0002448 +is_a: RO:0002436 +is_a: RO:0002566 + +[Typedef] +id: RO:0002449 +is_a: RO:0002448 + +[Typedef] +id: RO:0002450 +is_a: RO:0002448 + +[Typedef] +id: RO:0002479 +domain: BFO:0000003 ! occurrent +range: BFO:0000004 ! independent continuant +holds_over_chain: has_part BFO:0000066 {http://purl.obolibrary.org/obo/RO_0002581="true"} + +[Typedef] +id: RO:0002481 +is_a: RO:0002564 + +[Typedef] +id: RO:0002500 +is_a: RO:0002595 +inverse_of: RO:0002608 + +[Typedef] +id: RO:0002501 +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent +is_a: RO:0002410 + +[Typedef] +id: RO:0002506 +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity +is_a: RO:0002410 + +[Typedef] +id: RO:0002559 +is_a: RO:0002506 +inverse_of: RO:0002566 + +[Typedef] +id: RO:0002563 +is_a: RO:0002464 + +[Typedef] +id: RO:0002564 +is_a: RO:0002563 + +[Typedef] +id: RO:0002566 +is_a: RO:0002506 + +[Typedef] +id: RO:0002578 +is_a: RO:0002211 +is_a: RO:0002412 + +[Typedef] +id: RO:0002584 +holds_over_chain: has_part RO:0002215 +is_a: RO:0002328 +is_a: RO:0002595 + +[Typedef] +id: RO:0002595 +domain: BFO:0000040 ! material entity +range: BFO:0000015 ! process +is_a: RO:0002410 + +[Typedef] +id: RO:0002596 +holds_over_chain: RO:0002215 RO:0002211 +is_a: RO:0002500 + +[Typedef] +id: RO:0002597 +holds_over_chain: RO:0002215 RO:0002212 +is_a: RO:0002596 + +[Typedef] +id: RO:0002598 +holds_over_chain: RO:0002215 RO:0002213 +is_a: RO:0002596 + +[Typedef] +id: RO:0002608 +is_a: RO:0002410 + +[Typedef] +id: RO:0002629 +is_a: RO:0002213 +is_a: RO:0002578 + +[Typedef] +id: RO:0002630 +is_a: RO:0002212 +is_a: RO:0002578 + +[Typedef] +id: RO:0004031 +holds_over_chain: RO:0002327 has_part +is_a: RO:0002328 + +[Typedef] +id: RO:0004032 +holds_over_chain: RO:0002327 RO:0004047 +is_a: RO:0002264 + +[Typedef] +id: RO:0004033 +holds_over_chain: RO:0002327 RO:0004046 +is_a: RO:0002264 + +[Typedef] +id: RO:0004034 +holds_over_chain: RO:0002327 RO:0002304 +is_a: RO:0002263 +is_a: RO:0004032 + +[Typedef] +id: RO:0004035 +holds_over_chain: RO:0002327 RO:0002305 +is_a: RO:0002263 +is_a: RO:0004033 + +[Typedef] +id: RO:0004046 +is_a: RO:0002418 + +[Typedef] +id: RO:0004047 +is_a: RO:0002418 + +[Typedef] +id: correlates_with +name: correlates_with + +[Typedef] +id: decreased_in_magnitude_relative_to +name: decreased_in_magnitude_relative_to +def: "q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." [PATOC:CJM] +comment: This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'. +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality +is_transitive: true +is_a: different_in_magnitude_relative_to ! different_in_magnitude_relative_to + +[Typedef] +id: different_in_magnitude_relative_to +name: different_in_magnitude_relative_to +def: "q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." [PATOC:CJM] +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality + +[Typedef] +id: directly_associated_with +name: directly_associated_with +def: "q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear." [PATOC:cjm, Wikipedia:Association_(statistics)] +comment: Example: 'Lewy bodies increased number related to dystrophic neurite increased number' (from annotation of PMID:8740227 in http://ccdb.ucsd.edu/1.0/NDPO.owl#ndpo_404). Here the increase in the number of lewy bodies is directly_associated_with the increase in the number of dystrophic neurites.\nAssociation is weaker than correlation or proportionality. These relations may be later added to PATO. +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality +created_by: cjm +creation_date: 2009-08-26T02:50:08Z + +[Typedef] +id: has_cross_section +name: has_cross_section +def: "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2." [PATOC:CJM] +comment: Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round. + +[Typedef] +id: has_dividend_entity +name: has_dividend_entity +domain: PATO:0001470 ! proportionality to + +[Typedef] +id: has_dividend_quality +name: has_dividend_quality +domain: PATO:0001470 ! proportionality to +range: PATO:0000001 ! quality +is_a: has_ratio_quality ! has_ratio_quality + +[Typedef] +id: has_divisor_entity +name: has_divisor_entity +domain: PATO:0001470 ! proportionality to + +[Typedef] +id: has_divisor_quality +name: has_divisor_quality +domain: PATO:0001470 ! proportionality to +range: PATO:0000001 ! quality +is_a: has_ratio_quality ! has_ratio_quality + +[Typedef] +id: has_part +name: has part +name: has_part +def: "a core relation that holds between a whole and its part" [] +def: "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2." [PATOC:CJM] +comment: We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. +xref: BFO:0000051 +property_value: IAO:0000111 "has part" xsd:string +property_value: IAO:0000112 "my body has part my brain (continuant parthood, two material entities)" xsd:string +property_value: IAO:0000112 "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" xsd:string +property_value: IAO:0000112 "this year has part this day (occurrent parthood)" xsd:string +property_value: IAO:0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." xsd:string +property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string +property_value: IAO:0000118 "has_part" xsd:string +property_value: RO:0001900 RO:0001901 +is_transitive: true +is_a: RO:0002131 + +[Typedef] +id: has_ratio_quality +name: has_ratio_quality +domain: PATO:0001470 ! proportionality to +range: PATO:0000001 ! quality + +[Typedef] +id: has_relative_magnitude +name: has_relative_magnitude + +[Typedef] +id: increased_in_magnitude_relative_to +name: increased_in_magnitude_relative_to +def: "q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." [PATOC:CJM] +comment: This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'. +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality +is_transitive: true +is_a: different_in_magnitude_relative_to ! different_in_magnitude_relative_to + +[Typedef] +id: inversely_associated_with +name: inversely_associated_with +def: "q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear." [PATOC:cjm, Wikipedia:Association_(statistics)] +comment: Association is weaker than correlation or proportionality. These relations may be later added to PATO. +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality +created_by: cjm +creation_date: 2009-08-26T02:50:24Z + +[Typedef] +id: is_magnitude_of +name: is_magnitude_of +namespace: pato.ontology + +[Typedef] +id: is_measurement_of +name: is_measurement_of +namespace: pato.ontology + +[Typedef] +id: is_opposite_of +name: is opposite of +xref: RO:0002604 +is_metadata_tag: true +is_class_level: true + +[Typedef] +id: is_unit_of +name: is_unit_of +namespace: pato.ontology + +[Typedef] +id: part_of +name: part of +name: part_of +def: "a core relation that holds between a part and its whole" [] +xref: BFO:0000050 +property_value: IAO:0000111 "is part of" xsd:string +property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string +property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string +property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string +property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string +property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string +property_value: IAO:0000118 "part_of" xsd:string +property_value: RO:0001900 RO:0001901 +property_value: seeAlso http://www.obofoundry.org/ro/#OBO_REL:part_of xsd:string +is_transitive: true +is_a: RO:0002131 +inverse_of: has_part ! has part + +[Typedef] +id: realized_by +name: realized_by + +[Typedef] +id: reciprocal_of +name: reciprocal_of +def: "q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e." [PATOC:CJM] +comment: There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality. + +[Typedef] +id: similar_in_magnitude_relative_to +name: similar_in_magnitude_relative_to +def: "q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." [PATOC:CJM] +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality + +[Typedef] +id: singly_occurring_form_of +name: singly_occurring_form_of +comment: PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them. +synonym: "monadic_form_of" EXACT [] + +[Typedef] +id: towards +name: towards +comment: Relation binding a relational quality or disposition to the relevant type of entity. + diff --git a/pato-full.owl b/pato-full.owl new file mode 100644 index 00000000..194d8c5b --- /dev/null +++ b/pato-full.owl @@ -0,0 +1,56160 @@ + + + + + OBO-Edit 2.3.1 + 07:02:2018 10:27 + quality + 1.2 + segerdel + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + definition + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + term replaced by + + + + + + + + + + + + + + + + + + + + + + + + + + RO:0002604 + quality + is_opposite_of + true + true + is_opposite_of + is opposite of + + + + + + + + Abnormal/normal slim + + + + + + + + + Absent/present slim + + + + + + + + + Attribute slim + + + + + + + + + cell_quality + + + + + + + + + Disposition slim + + + + + + + + + Human phenotype slim + + + + + + + + + Pathology slim + + + + + + + + + Relational slim: types of quality that require an additional entity in order to exist + + + + + + + + + Scalar slim + + + + + + + + + Value slim + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + subset_property + + + + + + + + + + + + + + consider + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + has_alternative_id + + + + + + + + has_broad_synonym + + + + + + + + database_cross_reference + + + + + + + + has_exact_synonym + + + + + + + + has_narrow_synonym + + + + + + + + has_obo_format_version + + + + + + + + has_obo_namespace + + + + + + + + has_related_synonym + + + + + + + + + + + + + + in_subset + + + + + + + + + + + + + + + + + + + + + + + + + + shorthand + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + is part of + my brain is part of my body (continuant parthood, two material entities) + my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity) + this day is part of this year (occurrent parthood) + a core relation that holds between a part and its whole + Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other. + Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) + +A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'. + part_of + + BFO:0000050 + quality + part_of + part_of + part of + part_of + http://www.obofoundry.org/ro/#OBO_REL:part_of + + + + + + + + + + has part + my body has part my brain (continuant parthood, two material entities) + my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity) + this year has part this day (occurrent parthood) + Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2. + a core relation that holds between a whole and its part + Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part. + Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) + +A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'. + has_part + + BFO:0000051 + quality + has_part + has_part + We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. + has part + has_part + + + + + Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2. + PATOC:CJM + + + + + + + + + + + + + + + + + preceded by + x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. + An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other. + is preceded by + preceded_by + http://www.obofoundry.org/ro/#OBO_REL:preceded_by + preceded by + + + + + + + + + + + + + + + + precedes + x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. + precedes + + + + + + + + + + + + + + + + + + + occurs in + b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t + occurs_in + unfolds in + unfolds_in + Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant + + occurs in + + + + + + + + site of + [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t + Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant + + contains process + + + + + + + + + + inheres in + this fragility inheres in this vase + this red color inheres in this apple + a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence + A dependent inheres in its bearer at all times for which the dependent exists. + inheres_in + + inheres in + + + + + + + + + bearer of + this apple is bearer of this red color + this vase is bearer of this fragility + a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence + A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist. + bearer_of + is bearer of + + bearer of + + + + + + + + + + + participates in + this blood clot participates in this blood coagulation + this input material (or this output material) participates in this process + this investigator participates in this investigation + a relation between a continuant and a process, in which the continuant is somehow involved in the process + participates_in + participates in + + + + + + + + + + + + + + has participant + this blood coagulation has participant this blood clot + this investigation has participant this investigator + this process has participant this input material (or this output material) + a relation between a process and a continuant, in which the continuant is somehow involved in the process + Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time. + has_participant + http://www.obofoundry.org/ro/#OBO_REL:has_participant + has participant + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + David Osumi-Sutherland + X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) + ends after + + + + + + + + + + David Osumi-Sutherland + starts_at_end_of + X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) + immediately preceded by + + + + + + + + + David Osumi-Sutherland + ends_at_start_of + meets + X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) + immediately precedes + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. + temporally related to + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + quality + correlates_with + correlates_with + + + + + + + + + + + + q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + quality + decreased_in_magnitude_relative_to + This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'. + decreased_in_magnitude_relative_to + + + + + q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + PATOC:CJM + + + + + + + + + + q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + quality + different_in_magnitude_relative_to + different_in_magnitude_relative_to + + + + + q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + PATOC:CJM + + + + + + + + + + q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear. + cjm + 2009-08-26T02:50:08Z + quality + directly_associated_with + Example: 'Lewy bodies increased number related to dystrophic neurite increased number' (from annotation of PMID:8740227 in http://ccdb.ucsd.edu/1.0/NDPO.owl#ndpo_404). Here the increase in the number of lewy bodies is directly_associated_with the increase in the number of dystrophic neurites. +Association is weaker than correlation or proportionality. These relations may be later added to PATO. + directly_associated_with + + + + + q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear. + PATOC:cjm + Wikipedia:Association_(statistics) + + + + + + + + s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2. + quality + has_cross_section + Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round. + has_cross_section + + + + + s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2. + PATOC:CJM + + + + + + + + + quality + has_dividend_entity + has_dividend_entity + + + + + + + + + + + quality + has_dividend_quality + has_dividend_quality + + + + + + + + + quality + has_divisor_entity + has_divisor_entity + + + + + + + + + + + quality + has_divisor_quality + has_divisor_quality + + + + + + + + + + quality + has_ratio_quality + has_ratio_quality + + + + + + + + quality + has_relative_magnitude + has_relative_magnitude + + + + + + + + + + + + q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + quality + increased_in_magnitude_relative_to + This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'. + increased_in_magnitude_relative_to + + + + + q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + PATOC:CJM + + + + + + + + + + q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear. + cjm + 2009-08-26T02:50:24Z + quality + inversely_associated_with + Association is weaker than correlation or proportionality. These relations may be later added to PATO. + inversely_associated_with + + + + + q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear. + PATOC:cjm + Wikipedia:Association_(statistics) + + + + + + + + pato.ontology + is_magnitude_of + is_magnitude_of + + + + + + + + pato.ontology + is_measurement_of + is_measurement_of + + + + + + + + pato.ontology + is_unit_of + is_unit_of + + + + + + + + quality + realized_by + realized_by + + + + + + + + q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e. + quality + reciprocal_of + There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality. + reciprocal_of + + + + + q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e. + PATOC:CJM + + + + + + + + + + q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + quality + similar_in_magnitude_relative_to + similar_in_magnitude_relative_to + + + + + q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + PATOC:CJM + + + + + + + + monadic_form_of + quality + singly_occurring_form_of + PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them. + singly_occurring_form_of + + + + + + + + quality + towards + Relation binding a relational quality or disposition to the relevant type of entity. + towards + + + + + + + + + + + + + + + + + + + + + + + + + + An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts. + continuant + + + + + + + + + + + + + + + + + + + + An entity that has temporal parts and that happens, unfolds or develops through time. + occurrent + + + + + + + + + + + + + + + + A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything. + independent continuant + + + + + + + + + An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. + process + + + + + + + + + + + + + + + A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same. + specifically dependent continuant + + + + + + + + + An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. + material entity + + + + + + + + + + anatomical entity + + + + + + + + + + connected anatomical structure + + + + + + + + + + + material anatomical entity + + + + + + + + + + cell part (CARO) + cell part + + + + + + + + + organism or virus or viroid + + + + + + + + + biological entity + + + + + + + + + + + + + + + + + + cell + + + + + + + + + molecular process + molecular_function + + + + + + + + + catalytic activity + + + + + + + + + + + + + + + + + cellular_component + + + + + + + + + cell + + + + + + + + + + nucleus + nucleus + + + + + + + + + + cilium + + + + + + + + + biological_process + + + + + + + + + + + + true + + + kinase activity + + + + + + + + + transferase activity + + + + + + + + + transferase activity, transferring phosphorus-containing groups + + + + + + + + + cell projection + + + + + + + + + organelle + + + + + + + + + membrane-bounded organelle + + + + + + + + + + intracellular organelle + + + + + + + + + + intracellular membrane-bounded organelle + + + + + + + + + intracellular part + + + + + + + + + + + cell part + cell part + + + + + + + + + + + + + + + + + plasma membrane bounded cell projection + + + + + + + + + quality + PATO:0000000 + obsolete pato + true + + + + + + + + + A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities + PATO:0000072 + quality + PATO:0000001 + quality + + + + + A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities + PATOC:GVG + + + + + + + + + quality + PATO:0000002 + obsolete value + true + + + + + + + + + quality + PATO:0000003 + obsolete assay + true + + + + + + + + + A quality of inhering in a bearer by virtue of the bearer's disposition to move freely. + quality + PATO:0000004 + + + + Should be defined using translocation. + mobility + + + + + A quality of inhering in a bearer by virtue of the bearer's disposition to move freely. + PATOC:GVG + + + + + + + + + quality + PATO:0000005 + obsolete absolute activity + true + + + + + + + + + quality + PATO:0000006 + obsolete process + true + + + + + + + + + quality + PATO:0000007 + obsolete relative activity + true + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's scalar absolute value of the rate of change of the bearer's position. + quality + velocity + PATO:0000008 + + + speed + + + + + A physical quality inhering in a bearer by virtue of the bearer's scalar absolute value of the rate of change of the bearer's position. + Wikipedia:http://en.wikipedia.org/wiki/Velocity + + + + + + + + + quality + PATO:0000009 + obsolete absolute speed + true + + + + + + + + + quality + PATO:0000010 + obsolete relative speed + true + + + + + + + + + A time quality inhering in a bearer by virtue of how long the bearer has existed. + quality + PATO:0000011 + + + age + + + + + A time quality inhering in a bearer by virtue of how long the bearer has existed. + WordNet:WordNet + + + + + + + + + quality + PATO:0000012 + obsolete absolute age + true + + + + + + + + + quality + PATO:0000013 + obsolete relative age + true + + + + + + + + + + A composite chromatic quality composed of hue, saturation and intensity parts. + PATO:0000020 + colour + relative color + quality + PATO:0000014 + + color + + + + + A composite chromatic quality composed of hue, saturation and intensity parts. + PATOC:GVG + + + + + + + + + A chromatic scalar-circular quality inhering in an object that manifests in an observer by virtue of the dominant wavelength of the visible light; may be subject to fiat divisions, typically into 7 or 8 spectra. + quality + PATO:0000015 + + color hue + + + + + A chromatic scalar-circular quality inhering in an object that manifests in an observer by virtue of the dominant wavelength of the visible light; may be subject to fiat divisions, typically into 7 or 8 spectra. + PATOC:cjm + + + + + + + + + A scalar optical property that is the intensity, value or amount of perceived light. + color intensity + color lightness + color value + quality + PATO:0000016 + + Color brightness refers to the intensity, lightness or value of the light present. Think of this as a dimmer switch. + color brightness + + + + + A scalar optical property that is the intensity, value or amount of perceived light. + PATOC:MAH + + + + + + + + + A scalar chromatic property that is the degree of purity of perceived light. + quality + PATO:0000017 + + Color saturation refers to the amount of white light or gray paint mixed in with the hue (single wavelength) and is a measure of color purity. + color saturation + + + + + A scalar chromatic property that is the degree of purity of perceived light. + PATOC:GVG + + + + + + + + + A luminous flux quality inhering in a bearer by virtue of the bearer's emitting longer wavelength light following the absorption of shorter wavelength radiation; fluorescence is common with aromatic compounds with several rings joined together. + quality + PATO:0000018 + + fluorescence + + + + + A luminous flux quality inhering in a bearer by virtue of the bearer's emitting longer wavelength light following the absorption of shorter wavelength radiation; fluorescence is common with aromatic compounds with several rings joined together. + PATOC:GVG + + + + + + + + + A chromatic property that is the relative position of different hues or degrees of saturation. + quality + PATO:0000019 + + color pattern + + + + + A chromatic property that is the relative position of different hues or degrees of saturation. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to harmonious coexistence. + quality + PATO:0000021 + + + + Needs redefined or obsoleted. Is this the same as genetic incompatibility? Moved to organismal quality. + compatibility + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to harmonious coexistence. + PATOC:GVG + + + + + + + + + quality + PATO:0000022 + obsolete gametophytic compatability + true + + + + + + + + + quality + PATO:0000023 + obsolete relative compatability + true + + + + + + + + + quality + PATO:0000024 + obsolete sporophytic compatability + true + + + + + + + + + A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts. + PATO:0002015 + composed of + compositionality + content + structure, composition + quality + PATO:0000025 + + + For example calcium composition (which may inhere in bone), haemoglobin composition (which may inhere in blood). + composition + + + + + A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts. + PATOC:GVG + + + + + + + + + quality + PATO:0000026 + obsolete carbohydrate composition + true + + + + + + + + + quality + PATO:0000027 + obsolete electrolyte composition + true + + + + + + + + + quality + PATO:0000028 + obsolete macromolecular composition + true + + + + + + + + + quality + PATO:0000029 + obsolete protein composition + true + + + + + + + + + quality + PATO:0000030 + obsolete enzyme composition + true + + + + + + + + + quality + PATO:0000031 + obsolete metabolite composition + true + + + + + + + + + quality + PATO:0000032 + obsolete secondary product composition + true + + + + + + + + + A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance. + concentration + quality + PATO:0000033 + + + + concentration of + + + + + A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance. + Wikipedia:http://en.wikipedia.org/wiki/concentration + + + + + + + + + quality + PATO:0000034 + obsolete protein concentration + true + + + + + + + + + quality + PATO:0000035 + obsolete carbohydrate concentration + true + + + + + + + + + quality + PATO:0000036 + obsolete water content + true + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's density, firmness, or viscosity. + quality + firmness + PATO:0000037 + + + consistency + + + + + A physical quality inhering in a bearer by virtue of the bearer's density, firmness, or viscosity. + PATOC:GVG + + + + + + + + + quality + PATO:0000038 + obsolete gel consistency + true + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's orientation in space. + quality + PATO:0000039 + + TODO: consider merging with angular placement. + direction + + + + + A physical quality inhering in a bearer by virtue of the bearer's orientation in space. + thesaurus.maths:thesaurus.maths + + + + + + + + + A quality that is the extent of space between two entities. + quality + PATO:0000040 + + + + distance + + + + + A quality that is the extent of space between two entities. + PATOC:GVG + + + + + + + + + quality + PATO:0000041 + obsolete absolutedistance + true + + + + + + + + + quality + PATO:0000042 + obsolete relative distance + true + + + + + + + + + A quality of a physical entity inhering in a bearer by virtue of whether the bearer's molecules are being perceived by a taste and odorant receptors. + quality + PATO:0000043 + + + flavor + + + + + A quality of a physical entity inhering in a bearer by virtue of whether the bearer's molecules are being perceived by a taste and odorant receptors. + PATOC:GVG + + + + + + + + + A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time. + quality + PATO:0000044 + + + frequency + + + + + A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time. + Wikipedia:http://en.wikipedia.org/wiki/frequency + + + + + + + + + quality + PATO:0000045 + obsolete absolute frequency + true + + + + + + + + + quality + PATO:0000046 + obsolete relative frequency + true + + + + + + + + + An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved. + quality + PATO:0000047 + + biological sex + + + + + An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved. + MGED:MGED + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's resistance to pressure, being broken, or pierced + quality + impenetrability + toughness + PATO:0000048 + + + hardness + + + + + A physical quality inhering in a bearer by virtue of the bearer's resistance to pressure, being broken, or pierced + merriam-webster:merriam-webster + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's possessing or displaying a distinctive feature in type or degree or effect or force. + quality + PATO:0000049 + + + intensity + + + + + A quality inhering in a bearer by virtue of the bearer's possessing or displaying a distinctive feature in type or degree or effect or force. + PATOC:GVG + + + + + + + + + A time quality inhering in a bearer by virtue of the bearer's expected maximum age. + quality + PATO:0000050 + + life span + + + + + A time quality inhering in a bearer by virtue of the bearer's expected maximum age. + PATOC:GVG + + + + + + + + + A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. + quality + PATO:0000051 + + morphology + + + + + A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. + PATOC:GVG + + + + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). + PATO:0001647 + relational shape quality + quality + PATO:0000052 + + Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects. + shape + + + + + A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + quality + PATO:0000054 + obsolete absolute number + true + + + + + + + + + quality + PATO:0000055 + obsolete relative number + true + + + + + + + + + An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth. + quality + nutritional quality + PATO:0000056 + + + trophic quality + + + + + An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth. + Wikipedia:http://en.wikipedia.org/wiki/Trophic_level + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurrence. + PATO:0000156 + PATO:0000158 + temporal + incidence + quality + PATO:0000057 + + + occurrence + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurrence. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's molecules being are aerially dispersed and perceived by an odorant receptor. + quality + PATO:0000058 + + odor + + + + + A physical quality inhering in a bearer by virtue of the bearer's molecules being are aerially dispersed and perceived by an odorant receptor. + PATOC:GVG + + + + + + + + + A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a parent. + parental type + quality + PATO:0000059 + + obsolete parental quality + true + + + + + A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a parent. + WordNet:WordNet + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts. + PATO:0000132 + PATO:0001565 + distribution + quality + pattern + PATO:0000060 + + + spatial pattern + + + + + A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts. + PATOC:GVG + + + + + + + + + quality + PATO:0000061 + obsolete relative pattern + true + + + + + + + + + A sleep quality defined by the mathematic properties of the relative time frames of the sleep cycle. + quality + PATO:0000062 + + sleep pattern + + + + + A sleep quality defined by the mathematic properties of the relative time frames of the sleep cycle. + PATOC:GVG + + + + + + + + + quality + PATO:0000063 + obsolete percentage + true + + + + + + + + + quality + PATO:0000064 + obsolete absolute percentage + true + + + + + + + + + quality + PATO:0000065 + obsolete relative percentage + true + + + + + + + + + A texture quality inhering in a bearer by virtue of the bearer's having hair or bristles. + quality + PATO:0000066 + + + pilosity + + + + + A texture quality inhering in a bearer by virtue of the bearer's having hair or bristles. + PATOC:GVG + + + + + + + + + quality + PATO:0000067 + obsolete relative pilosity + true + + + + + + + + + quality + PATO:0000068 + TODO: define this or obsolete it and move children somewhere else. + qualitative + + + + + + + + + A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. + quality + PATO:0000069 + + deviation(from_normal) + + + + + A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. + PATOC:GVG + + + + + + + + + + + + + + + The number of entities of this type that are part of the whole organism. + PATO:0000053 + PATO:0000071 + PATO:0001169 + PATO:0001226 + presence or absence in organism + quantitative + quality + count in organism + number + presence + PATO:0000070 + + This term was originally named "presence". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10. + amount + + + + + The number of entities of this type that are part of the whole organism. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + + + true + + + + + + + + + quality + PATO:0000073 + obsolete relative_quality + true + + + + + + + + + quality + PATO:0000074 + obsolete shattering + true + + + + + + + + + quality + PATO:0000075 + obsolete threshability + true + + + + + + + + + quality + PATO:0000076 + obsolete regulation + true + + + + + + + + + A quality inhering in a bearer by virtue of the whether the bearer's disposition to react to a stimulus or an agent. + quality + reactivity + response + responsivity + PATO:0000077 + + + + + response to + + + + + A quality inhering in a bearer by virtue of the whether the bearer's disposition to react to a stimulus or an agent. + PATOC:GVG + + + + + reactivity + GOC:CJM + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's movement or variation characterized by the regular recurrence or alternation of different quantities or conditions. + quality + PATO:0000078 + + rhythm quality + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's movement or variation characterized by the regular recurrence or alternation of different quantities or conditions. + answers.com:answers.com + + + + + + + + + quality + PATO:0000079 + obsolete absolute rhythym + true + + + + + + + + + A physical quality of a process inhering in a bearer by virtue of the size of the bearer's maximum displacement from the 'normal' position, when periodic motion is taking place. + quality + PATO:0000080 + + amplitude + + + + + A physical quality of a process inhering in a bearer by virtue of the size of the bearer's maximum displacement from the 'normal' position, when periodic motion is taking place. + thesaurus.maths:thesaurus.maths + + + + + + + + + + + true + + + + + + + + + A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm. + quality + PATO:0000082 + + persistence + + + + + A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm. + reference.com:reference.com + + + + + + + + + A quality that exists by virtue of being a particular point in the time of a cycle. + quality + PATO:0000083 + + phase + + + + + A quality that exists by virtue of being a particular point in the time of a cycle. + PATOC:GVG + + + + + + + + + quality + PATO:0000084 + obsolete relative rhythym + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation. + sensitivity + quality + PATO:0000085 + + + + sensitivity toward + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation. + PATOC:GVG + + + + + + + + + quality + PATO:0000086 + obsolete absolute sensitivity + true + + + + + + + + + quality + PATO:0000087 + obsolete disease sensitivity + true + + + + + + + + + quality + PATO:0000088 + obsolete absolute disease sensitivity + true + + + + + + + + + quality + PATO:0000089 + obsolete relative disease sensitivity + true + + + + + + + + + quality + PATO:0000090 + obsolete relative sensitivity + true + + + + + + + + + quality + PATO:0000091 + obsolete stress sensitivity + true + + + + + + + + + quality + PATO:0000092 + obsolete abiotic stress sensitivity + true + + + + + + + + + quality + PATO:0000093 + obsolete chemical sensitivity + true + + + + + + + + + quality + PATO:0000094 + obsolete drug sensitivity + true + + + + + + + + + quality + PATO:0000095 + obsolete absolute drug sensitivity + true + + + + + + + + + quality + PATO:0000096 + obsolete relative drug sensitivity + true + + + + + + + + + quality + PATO:0000097 + obsolete herbicide sensitivity + true + + + + + + + + + quality + PATO:0000098 + obsolete insecticide sensitivity + true + + + + + + + + + quality + PATO:0000099 + obsolete plant growth hormone sensitivity + true + + + + + + + + + quality + PATO:0000100 + obsolete soil composition sensitivity + true + + + + + + + + + quality + PATO:0000101 + obsolete soil nutrient sensitivity + true + + + + + + + + + quality + PATO:0000102 + obsolete macronutrient sensitivity + true + + + + + + + + + quality + PATO:0000103 + obsolete micronutrient sensitivity + true + + + + + + + + + quality + PATO:0000104 + obsolete osmotic response sensitivity + true + + + + + + + + + quality + PATO:0000105 + obsolete p h sensitivity + true + + + + + + + + + quality + PATO:0000106 + obsolete acid sensitivity + true + + + + + + + + + quality + PATO:0000107 + obsolete alkali sensitivity + true + + + + + + + + + quality + PATO:0000108 + obsolete salt sensitivity + true + + + + + + + + + quality + PATO:0000109 + obsolete water sensitivity + true + + + + + + + + + quality + PATO:0000110 + obsolete drought sensitivity + true + + + + + + + + + quality + PATO:0000111 + obsolete flooding sensitivity + true + + + + + + + + + quality + PATO:0000112 + obsolete humidity sensitivity + true + + + + + + + + + quality + PATO:0000113 + obsolete radiation sensitivity + true + + + + + + + + + quality + PATO:0000114 + obsolete temperature sensitivity + true + + + + + + + + + quality + PATO:0000115 + obsolete absolute temperature sensitivity + true + + + + + + + + + quality + PATO:0000116 + obsolete relative temperature sensitivity + true + + + + + + + + + A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. + quality + PATO:0000117 + + + size + + + + + A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. + WordNet:WordNet + + + + + + + + + quality + PATO:0000118 + obsolete absolute size + true + + + + + + + + + A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension. + quality + PATO:0000119 + + + height + + + + + A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension. + PATOC:GVG + + + + + + + + + quality + PATO:0000120 + obsolete absolute height + true + + + + + + + + + quality + PATO:0000121 + obsolete relative height + true + + + + + + + + + A 1-D extent quality which is equal to the distance between two points. + quality + PATO:0000122 + + + + length + + + + + A 1-D extent quality which is equal to the distance between two points. + PATOC:GVG + + + + + + + + + quality + PATO:0000123 + obsolete absolute length + true + + + + + + + + + quality + PATO:0000124 + obsolete relative length + true + + + + + + + + + A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. + quality + PATO:0000125 + + + + mass + + + + + A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. + PATOC:GVG + + + + + + + + + quality + PATO:0000126 + obsolete absolute mass + true + + + + + + + + + quality + PATO:0000127 + obsolete relative mass + true + + + + + + + + + A physical quality inhering in a bearer that has mass near a gravitational body. + quality + PATO:0000128 + + + weight + + + + + A physical quality inhering in a bearer that has mass near a gravitational body. + Wikipedia:http://en.wikipedia.org/wiki/Weight + + + + + + + + + quality + PATO:0000129 + obsolete absolute weight + true + + + + + + + + + quality + PATO:0000130 + obsolete relative weight + true + + + + + + + + + quality + PATO:0000131 + obsolete relative size + true + + + + + + + + + + + true + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object. + PATO:0000137 + angular placement + quality + amount of rotation + angle + angular magnitude + plane angle + PATO:0000133 + + + orientation + + + + + A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object. + PATOC:JE + + + + + + + + + quality + PATO:0000134 + obsolete absolute_angle + true + + + + + + + + + quality + PATO:0000135 + obsolete relative_angle + true + + + + + + + + + A morphological quality pertaining to the degree to which an object contains an opening, aperture, orifice or vent. + quality + PATO:0000136 + + closure + + + + + A morphological quality pertaining to the degree to which an object contains an opening, aperture, orifice or vent. + PATOC:CJM + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + quality + PATO:0000138 + obsolete absolute orientation + true + + + + + + + + + quality + PATO:0000139 + obsolete relative orientation + true + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. + PATO:0001032 + PATO:0001631 + location + placement + relational spatial quality + quality + PATO:0000140 + + position + + + + + A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. + PATOC:GVG + + + + + + + + + A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form. + PATO:0001452 + conformation + relational structural quality + quality + PATO:0000141 + + structure + + + + + A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form. + PATOC:GVG + + + + + conformation + VT:1000738 + + + + + + + + + quality + PATO:0000142 + obsolete substance + true + + + + + + + + + quality + PATO:0000143 + obsolete addictive substance + true + + + + + + + + + quality + PATO:0000144 + This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a solid; 'PATO:0001546' + obsolete solid substance + true + + + + + + + + + quality + PATO:0000145 + This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a liquid; PATO:0001548 ' + obsolete liquid substance + true + + + + + + + + + A physical quality of the thermal energy of a system. + quality + PATO:0000146 + + + temperature + + + + + A physical quality of the thermal energy of a system. + PATOC:GVG + + + + + + + + + quality + PATO:0000147 + obsolete absolute temperature + true + + + + + + + + + quality + PATO:0000148 + obsolete body temperature + true + + + + + + + + + quality + PATO:0000149 + obsolete relative temperature + true + + + + + + + + + A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics. + quality + PATO:0000150 + + texture + + + + + A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics. + PATOC:GVG + + + + + + + + + quality + PATO:0000151 + obsolete relative texture + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's sensitivity towards a fixed location or value where a change is observed; upper limit. + quality + PATO:0000152 + + + + threshold + + + + + A quality inhering in a bearer by virtue of the bearer's sensitivity towards a fixed location or value where a change is observed; upper limit. + PATOC:GVG + + + + + + + + + quality + PATO:0000153 + obsolete absolute threshold + true + + + + + + + + + quality + PATO:0000154 + obsolete pain threshold + true + + + + + + + + + quality + PATO:0000155 + obsolete relative threshold + true + + + + + + + + + + + true + + + + + + + + + quality + PATO:0000157 + obsolete absolute temporal + true + + + + + + + + + + + true + + + + + + + + + quality + PATO:0000159 + obsolete absolute incidence + true + + + + + + + + + quality + PATO:0000160 + obsolete relative incidence + true + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time. + quality + PATO:0000161 + + + rate + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time. + PATOC:melissa + + + + + + + + + quality + PATO:0000162 + obsolete absolute rate + true + + + + + + + + + quality + PATO:0000163 + obsolete relative rate + true + + + + + + + + + quality + PATO:0000164 + obsolete relative temporal + true + + + + + + + + + A quality in which events occur in sequence. + quality + PATO:0000165 + + + time + + + + + A quality in which events occur in sequence. + PATOC:GVG + + + + + + + + + quality + PATO:0000166 + obsolete absolute time + true + + + + + + + + + A limited, often assigned period of activity. + quality + PATO:0000167 + + obsolete bouts + true + + + + + A limited, often assigned period of activity. + answers.com:answers.com + + + + + + + + + quality + PATO:0000168 + obsolete relative time + true + + + + + + + + + An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population. + quality + PATO:0000169 + + + viability + + + + + An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population. + PATOC:GVG + + + + + + + + + quality + PATO:0000170 + obsolete yield + true + + + + + + + + + quality + PATO:0000171 + obsolete absolute yield + true + + + + + + + + + quality + PATO:0000172 + obsolete relative yield + true + + + + + + + + + quality + PATO:0000173 + obsolete function + true + + + + + + + + + quality + PATO:0000174 + obsolete autonomic function + true + + + + + + + + + quality + PATO:0000175 + obsolete behavioral function + true + + + + + + + + + quality + PATO:0000176 + obsolete metabolic function + true + + + + + + + + + quality + PATO:0000177 + obsolete physiological function + true + + + + + + + + + quality + PATO:0000178 + obsolete relative function + true + + + + + + + + + quality + PATO:0000179 + obsolete body position + true + + + + + + + + + quality + PATO:0000180 + obsolete body tone + true + + + + + + + + + quality + PATO:0000181 + obsolete piloerection + true + + + + + + + + + quality + PATO:0000182 + obsolete abdominal tone + true + + + + + + + + + quality + PATO:0000183 + obsolete limb tone + true + + + + + + + + + quality + PATO:0000184 + obsolete arousal + true + + + + + + + + + A behavioral quality inhering in a bearer by virtue of having physical steadiness. + quality + PATO:0000185 + + + balance + + + + + A behavioral quality inhering in a bearer by virtue of having physical steadiness. + thefreedictionary:thefreedictionary + + + + + + + + + An organismal quality inhering in a bearer by virtue of the bearer's behavior aggregate of the responses or reactions or movements in a given situation. + PATO:0001722 + behavioural quality + quality + PATO:0000186 + behavioral quality + + + + + An organismal quality inhering in a bearer by virtue of the bearer's behavior aggregate of the responses or reactions or movements in a given situation. + PATOC:GVG + + + + + + + + + A relational quality of occurrent inhering in a bearer by virtue of the bearer's ability to consume a resource. + quality + propensity to consume + PATO:0000187 + + + Use GO:0007631 + obsolete consumption quality + true + + + + + A relational quality of occurrent inhering in a bearer by virtue of the bearer's ability to consume a resource. + PATOC:GVG + + + + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's having or lacking skillful and effective interaction of movement. + quality + PATO:0000188 + + + + coordination + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's having or lacking skillful and effective interaction of movement. + PATOC:GVG + + + + + + + + + A behavioral quality inhering in a bearer by virtue of whether the bearer's disposition to perceive differences between two or more stimuli. + quality + PATO:0000189 + + + + discrimination + + + + + A behavioral quality inhering in a bearer by virtue of whether the bearer's disposition to perceive differences between two or more stimuli. + PATOC:GVG + + + + + + + + + quality + PATO:0000190 + obsolete gait + true + + + + + + + + + quality + PATO:0000191 + obsolete learning_and memory + true + + + + + + + + + quality + PATO:0000192 + obsolete locomotor_activity + true + + + + + + + + + quality + PATO:0000193 + obsolete mating + true + + + + + + + + + quality + PATO:0000194 + obsolete spontaneous_activity + true + + + + + + + + + quality + PATO:0000195 + obsolete startle response + true + + + + + + + + + quality + PATO:0000196 + obsolete vocalization + true + + + + + + + + + quality + PATO:0000197 + obsolete transfer_arousal + true + + + + + + + + + quality + PATO:0000198 + obsolete absolute consumption + true + + + + + + + + + quality + PATO:0000199 + obsolete relative consumption + true + + + + + + + + + quality + PATO:0000200 + obsolete learning + true + + + + + + + + + quality + PATO:0000201 + obsolete memory + true + + + + + + + + + quality + PATO:0000202 + obsolete long term memory + true + + + + + + + + + quality + PATO:0000203 + obsolete short term memory + true + + + + + + + + + quality + PATO:0000204 + obsolete absolute locomotor_activity + true + + + + + + + + + quality + PATO:0000205 + obsolete relative locomotor_activity + true + + + + + + + + + quality + PATO:0000206 + obsolete enzyme function + true + + + + + + + + + quality + PATO:0000207 + obsolete circulatory function + true + + + + + + + + + quality + PATO:0000208 + obsolete defensive function + true + + + + + + + + + quality + PATO:0000209 + obsolete digestive function + true + + + + + + + + + quality + PATO:0000210 + obsolete excretory function + true + + + + + + + + + quality + PATO:0000211 + obsolete muscle function + true + + + + + + + + + quality + PATO:0000212 + obsolete neural function + true + + + + + + + + + quality + PATO:0000213 + obsolete neurobehavioral function + true + + + + + + + + + quality + PATO:0000214 + obsolete reproductive function + true + + + + + + + + + quality + PATO:0000215 + obsolete respiratory function + true + + + + + + + + + quality + PATO:0000216 + obsolete heart rate + true + + + + + + + + + quality + PATO:0000217 + obsolete immune function + true + + + + + + + + + quality + PATO:0000218 + obsolete repair function + true + + + + + + + + + quality + PATO:0000219 + obsolete healing + true + + + + + + + + + quality + PATO:0000220 + obsolete regeneration + true + + + + + + + + + quality + PATO:0000221 + obsolete urination + true + + + + + + + + + quality + PATO:0000222 + obsolete muscle elevation + true + + + + + + + + + quality + PATO:0000223 + obsolete muscle strength + true + + + + + + + + + quality + PATO:0000224 + obsolete motor function + true + + + + + + + + + quality + PATO:0000225 + obsolete sensory function + true + + + + + + + + + quality + PATO:0000226 + obsolete tactile response + true + + + + + + + + + quality + PATO:0000227 + obsolete motor performance + true + + + + + + + + + quality + PATO:0000228 + obsolete auditory + true + + + + + + + + + quality + PATO:0000229 + obsolete olfactory + true + + + + + + + + + quality + PATO:0000230 + obsolete proprioreception + true + + + + + + + + + quality + PATO:0000231 + obsolete reflex + true + + + + + + + + + quality + PATO:0000232 + obsolete taste + true + + + + + + + + + quality + PATO:0000233 + obsolete touch + true + + + + + + + + + quality + PATO:0000234 + obsolete visual + true + + + + + + + + + quality + PATO:0000235 + obsolete odor_acuity + true + + + + + + + + + quality + PATO:0000236 + obsolete odor type + true + + + + + + + + + quality + PATO:0000237 + obsolete absolute odor_acuity + true + + + + + + + + + quality + PATO:0000238 + obsolete relative odor_acuity + true + + + + + + + + + quality + PATO:0000239 + obsolete blinking reflex + true + + + + + + + + + quality + PATO:0000240 + obsolete contact righting reflex + true + + + + + + + + + quality + PATO:0000241 + obsolete corneal reflex + true + + + + + + + + + quality + PATO:0000242 + obsolete flinch reflex + true + + + + + + + + + quality + PATO:0000243 + obsolete lordosis reflex + true + + + + + + + + + quality + PATO:0000244 + obsolete ocular reflex + true + + + + + + + + + quality + PATO:0000245 + obsolete pinna reflex + true + + + + + + + + + quality + PATO:0000246 + obsolete postural reflex + true + + + + + + + + + quality + PATO:0000247 + obsolete proboscis extension reflex + true + + + + + + + + + quality + PATO:0000248 + obsolete pupillary reflex + true + + + + + + + + + quality + PATO:0000249 + obsolete righting reflex + true + + + + + + + + + quality + PATO:0000250 + obsolete spinal reflex + true + + + + + + + + + quality + PATO:0000251 + obsolete startle reflex + true + + + + + + + + + quality + PATO:0000252 + obsolete suckling reflex + true + + + + + + + + + quality + PATO:0000253 + obsolete swallowing reflex + true + + + + + + + + + quality + PATO:0000254 + obsolete vibrissae reflex + true + + + + + + + + + quality + PATO:0000255 + obsolete taste_acuity + true + + + + + + + + + quality + PATO:0000256 + obsolete taste type + true + + + + + + + + + quality + PATO:0000257 + obsolete absolute taste_acuity + true + + + + + + + + + quality + PATO:0000258 + obsolete relative taste_acuity + true + + + + + + + + + quality + PATO:0000259 + obsolete visual_ability + true + + + + + + + + + quality + PATO:0000260 + obsolete visual_acuity + true + + + + + + + + + A quality of a single physical entity which is held by a bearer when the latter exhibits a state of growth, differentiation, or development. + quality + PATO:0000261 + + maturity + + + + + A quality of a single physical entity which is held by a bearer when the latter exhibits a state of growth, differentiation, or development. + Merriam-Webster:Merriam-Webster + + + + + + + + + quality + PATO:0000262 + obsolete visual placing + true + + + + + + + + + quality + PATO:0000263 + obsolete visual threshold + true + + + + + + + + + quality + PATO:0000264 + obsolete absolute visual_ability + true + + + + + + + + + quality + PATO:0000265 + obsolete relative visual_ability + true + + + + + + + + + quality + PATO:0000266 + obsolete absolute visual_acuity + true + + + + + + + + + quality + PATO:0000267 + obsolete relative visual_acuity + true + + + + + + + + + quality + PATO:0000268 + obsolete absolute visual threshold + true + + + + + + + + + quality + PATO:0000269 + obsolete relative visual threshold + true + + + + + + + + + quality + PATO:0000270 + obsolete defecation + true + + + + + + + + + quality + PATO:0000271 + obsolete prepulse inhibition + true + + + + + + + + + quality + PATO:0000272 + obsolete relative neurobehavioral function + true + + + + + + + + + A reproductive quality inhering in an organism or population by virtue of the bearer's potential reproductive capacity ad measured by the number of gametes. + quality + PATO:0000273 + + + + fecundity + + + + + A reproductive quality inhering in an organism or population by virtue of the bearer's potential reproductive capacity ad measured by the number of gametes. + Wikipedia:http://en.wikipedia.org/wiki/Fecundity + + + + + + + + + A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction. + quality + PATO:0000274 + + + fertility + + + + + A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction. + PATOC:GVG + + + + + + + + + quality + PATO:0000275 + obsolete gestational period + true + + + + + + + + + A reproductive quality inhering in the young of an animal by virtue of their number. + quality + litter size + PATO:0000276 + + + brood size + + + + + A reproductive quality inhering in the young of an animal by virtue of their number. + PATOC:GVG + + + + + + + + + A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction. + quality + PATO:0000277 + + + female fertility + + + + + A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction. + PATOC:GVG + + + + + + + + + quality + PATO:0000278 + obsolete hybrid fertility + true + + + + + + + + + A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction. + quality + PATO:0000279 + + + male fertility + + + + + A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction. + PATOC:GVG + + + + + + + + + quality + PATO:0000280 + obsolete backcross fertility + true + + + + + + + + + quality + PATO:0000281 + obsolete cytoplasmic sterility + true + + + + + + + + + quality + PATO:0000282 + obsolete f1 fertility + true + + + + + + + + + quality + PATO:0000283 + obsolete f2 fertility + true + + + + + + + + + quality + PATO:0000284 + obsolete germ line dependent fertility + true + + + + + + + + + quality + PATO:0000285 + obsolete soma dependent fertility + true + + + + + + + + + quality + PATO:0000286 + obsolete cytoplasmic male sterility + true + + + + + + + + + quality + PATO:0000287 + obsolete absolute litter size + true + + + + + + + + + quality + PATO:0000288 + obsolete relative litter size + true + + + + + + + + + quality + PATO:0000289 + obsolete respiratory rate + true + + + + + + + + + quality + PATO:0000290 + obsolete absolute respiratory rate + true + + + + + + + + + quality + PATO:0000291 + obsolete relative respiratory rate + true + + + + + + + + + quality + PATO:0000292 + obsolete mobility value + true + + + + + + + + + quality + PATO:0000293 + obsolete absolute activity value + true + + + + + + + + + quality + PATO:0000294 + obsolete process value + true + + + + + + + + + quality + PATO:0000295 + obsolete relative activity value + true + + + + + + + + + quality + PATO:0000296 + obsolete speed value + true + + + + + + + + + + A quality of a process which ends earlier than the natural end time or reference process. + PATO:0001508 + abolished + quality + incomplete + PATO:0000297 + + TODO: the definition is incorrect. See absent. + arrested + + + + + A quality of a process which ends earlier than the natural end time or reference process. + PATOC:LC + + + + + + + + + quality + PATO:0000298 + obsolete not arrested value + true + + + + + + + + + + A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely. + + quality + PATO:0000299 + + + mobile + + + + + A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely. + PATOC:GVG + + + + + + + + + A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely. + + quality + fixed + PATO:0000300 + + + immobile + + + + + A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely. + PATOC:GVG + + + + + + + + + quality + PATO:0000301 + obsolete absolute speed value + true + + + + + + + + + quality + PATO:0000302 + obsolete relative speed value + true + + + + + + + + + + + + + + + + + + + + + A speed which is relatively high. + + high speed + quality + fast speed + PATO:0000303 + + increased speed + + + + + A speed which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A speed which is relatively low. + + slow + slow speed + quality + PATO:0000304 + + decreased speed + + + + + A speed which is relatively low. + PATOC:GVG + + + + + + + + + quality + PATO:0000305 + obsolete age value + true + + + + + + + + + quality + PATO:0000306 + obsolete absolute age value + true + + + + + + + + + quality + PATO:0000307 + obsolete relative age value + true + + + + + + + + + An age which is relatively high. + + quality + PATO:0000308 + + old + + + + + An age which is relatively high. + PATOC:GVG + + + + + + + + + An age which is relatively low. + + quality + PATO:0000309 + + young + + + + + An age which is relatively low. + PATOC:GVG + + + + + + + + + quality + PATO:0000310 + obsolete color value + true + + + + + + + + + quality + PATO:0000311 + obsolete color hue value + true + + + + + + + + + quality + PATO:0000312 + obsolete color intensity value + true + + + + + + + + + quality + PATO:0000313 + obsolete color saturation value + true + + + + + + + + + quality + PATO:0000314 + obsolete flourescence value + true + + + + + + + + + quality + PATO:0000315 + obsolete color pattern value + true + + + + + + + + + quality + PATO:0000316 + obsolete relative color value + true + + + + + + + + + A color that lacks any hues as parts. + quality + PATO:0000317 + + + black + + + + + A color that lacks any hues as parts. + PATOC:GVG + + + + + + + + + A color hue with low wavelength of that portion of the visible spectrum lying between green and indigo, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 490 nanometers. + quality + PATO:0000318 + + + blue + + + + + A color hue with low wavelength of that portion of the visible spectrum lying between green and indigo, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 490 nanometers. + Dictionary:http://dictionary.reference.com/ + + + + + + + + + A color consisting of green and blue hue. + quality + PATO:0000319 + + cyan + + + + + A color consisting of green and blue hue. + PATOC:GVG + + + + + + + + + A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers. + quality + PATO:0000320 + + + green + + + + + A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers. + Dictionary:http://dictionary.reference.com/ + + + + + + + + + A color consisting of red and blue hues. + quality + PATO:0000321 + + + magenta + + + + + A color consisting of red and blue hues. + Wikipedia:http://en.wikipedia.org/wiki/Magenta + + + + + + + + + A color hue with high wavelength of the long-wave end of the visible spectrum, evoked in the human observer by radiant energy with wavelengths of approximately 630 to 750 nanometers. + quality + PATO:0000322 + + + red + + + + + A color hue with high wavelength of the long-wave end of the visible spectrum, evoked in the human observer by radiant energy with wavelengths of approximately 630 to 750 nanometers. + Dictionary:http://dictionary.reference.com/ + + + + + + + + + An achromatic color of maximum brightness; the color of objects that reflect nearly all light of all visible wavelengths. + quality + whitish + PATO:0000323 + + + white + + + + + An achromatic color of maximum brightness; the color of objects that reflect nearly all light of all visible wavelengths. + Dictionary:http://dictionary.reference.com/ + + + + + + + + + A color hue with medium wavelength of that portion of the visible spectrum lying between orange and green, evoked in the human observer by radiant energy with wavelengths of approximately 570 to 590 nanometers. + quality + PATO:0000324 + + + yellow + + + + + A color hue with medium wavelength of that portion of the visible spectrum lying between orange and green, evoked in the human observer by radiant energy with wavelengths of approximately 570 to 590 nanometers. + Dictionary:http://dictionary.reference.com/ + + + + + + + + + quality + PATO:0000325 + obsolete bright + true + + + + + + + + + quality + PATO:0000326 + obsolete dim + true + + + + + + + + + A color brightness which is relatively low. + + dark + quality + PATO:0000327 + + low brightness + + + + + A color brightness which is relatively low. + PATOC:MAH + + + + + + + + + A color saturation which is of low purity. + + pale + quality + dull + PATO:0000328 + + low saturation + + + + + A color saturation which is of low purity. + PATOC:MAH + + + + + + + + + A color pattern inhering in a bearer by virtue of bearer's being marked with irregularly shaped spots or blots of a different hue or degree of saturation. + blotched + quality + PATO:0000329 + + blotchy + + + + + A color pattern inhering in a bearer by virtue of bearer's being marked with irregularly shaped spots or blots of a different hue or degree of saturation. + Dictionary.com:Dictionary.com + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency. + + quality + PATO:0000330 + + + + irregular spatial pattern + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency. + PATOC:GVG + + + + + + + + + A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color. + + quality + PATO:0000331 + + discolored + + + + + A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color. + Dictionary.com:Dictionary.com + + + + + + + + + + + true + + + + + + + + + A color pattern inhering in a bearer by virtue of bearer's being marked with a round area of different hue or degree of saturation. + quality + PATO:0000333 + + spotted + + + + + A color pattern inhering in a bearer by virtue of bearer's being marked with a round area of different hue or degree of saturation. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + quality + mottled (sensu Drosophila) + PATO:0000335 + obsolete variegated + true + + + + + + + + + A color quality inhering in a bearer by virtue of the bearer's having color. + + PATO:0000332 + quality + pigmented + PATO:0000336 + + colored + + + + + A color quality inhering in a bearer by virtue of the bearer's having color. + PATOC:GVG + + + + + + + + + A color quality inhering in a bearer by virtue of the bearer's lacking color. + PATO:0000334 + quality + unpigmented + PATO:0000337 + + colorless + + + + + A color quality inhering in a bearer by virtue of the bearer's lacking color. + PATOC:GVG + + + + + + + + + quality + PATO:0000338 + obsolete compatability value + true + + + + + + + + + quality + PATO:0000339 + obsolete gametophytic compatability value + true + + + + + + + + + quality + PATO:0000340 + obsolete relative compatability value + true + + + + + + + + + quality + PATO:0000341 + obsolete sporophytic compatability value + true + + + + + + + + + quality + PATO:0000342 + obsolete gametophyte compatible value + true + + + + + + + + + quality + PATO:0000343 + obsolete gametophyte incompatible value + true + + + + + + + + + + A compatibility quality inhering in a bearer by virtue of the bearer's being capable of harmonious coexistence. + + quality + PATO:0000344 + + + + compatible + + + + + A compatibility quality inhering in a bearer by virtue of the bearer's being capable of harmonious coexistence. + PATOC:GVG + + + + + + + + + A compatibility quality inhering in a bearer by virtue of the bearer's being incapable of harmonious coexistence. + + quality + PATO:0000345 + + + + incompatible + + + + + A compatibility quality inhering in a bearer by virtue of the bearer's being incapable of harmonious coexistence. + PATOC:GVG + + + + + + + + + quality + PATO:0000346 + obsolete sporophyte compatible value + true + + + + + + + + + quality + PATO:0000347 + obsolete sporophyte incompatible value + true + + + + + + + + + quality + PATO:0000348 + obsolete composition value + true + + + + + + + + + quality + PATO:0000349 + obsolete carbohydrate composition value + true + + + + + + + + + quality + PATO:0000350 + obsolete electrolyte composition value + true + + + + + + + + + quality + PATO:0000351 + obsolete macromolecular composition value + true + + + + + + + + + quality + PATO:0000352 + obsolete metabolite composition value + true + + + + + + + + + quality + PATO:0000353 + obsolete secondary product composition value + true + + + + + + + + + quality + PATO:0000354 + obsolete protein composition value + true + + + + + + + + + quality + PATO:0000355 + obsolete enzyme composition value + true + + + + + + + + + quality + PATO:0000356 + obsolete concentration value + true + + + + + + + + + quality + PATO:0000357 + obsolete protein concentration value + true + + + + + + + + + quality + PATO:0000358 + obsolete sugar concentration value + true + + + + + + + + + quality + PATO:0000359 + obsolete water content value + true + + + + + + + + + quality + PATO:0000360 + obsolete consistency value + true + + + + + + + + + quality + PATO:0000361 + obsolete gel consistency value + true + + + + + + + + + quality + PATO:0000362 + obsolete direction value + true + + + + + + + + + quality + PATO:0000363 + obsolete away + true + + + + + + + + + quality + PATO:0000364 + obsolete bi-directional + true + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point. + + quality + PATO:0000365 + + down + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point. + PATOC:GVG + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces east. + quality + PATO:0000366 + + left + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces east. + PATOC:GVG + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces west. + quality + PATO:0000367 + + right + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces west. + PATOC:GVG + + + + + + + + + quality + PATO:0000368 + obsolete towards1 + true + + + + + + + + + quality + PATO:0000369 + obsolete unidirectional + true + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point. + + quality + PATO:0000370 + + up + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point. + PATOC:GVG + + + + + + + + + quality + PATO:0000371 + obsolete distance value + true + + + + + + + + + quality + PATO:0000372 + obsolete absolute distance value + true + + + + + + + + + quality + PATO:0000373 + obsolete relative distance value + true + + + + + + + + + + + + + + + + + + + + + A distance which is greater relative to the normal or average. + + quality + long distance + PATO:0000374 + + + increased distance + + + + + A distance which is greater relative to the normal or average. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A distance which is lesser relative to the normal or average. + + quality + short distance + PATO:0000375 + + + decreased distance + + + + + A distance which is lesser relative to the normal or average. + PATOC:GVG + + + + + + + + + quality + PATO:0000376 + obsolete flavor value + true + + + + + + + + + quality + PATO:0000377 + obsolete frequency value + true + + + + + + + + + quality + PATO:0000378 + obsolete absolute frequency value + true + + + + + + + + + quality + PATO:0000379 + obsolete relative frequency value + true + + + + + + + + + + + + + + + + + + + + + A frequency which is relatively high. + + high frequency + quality + frequent + PATO:0000380 + + + increased frequency + + + + + A frequency which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A frequency which is relatively low. + + low frequency + quality + infrequent + PATO:0000381 + + + decreased frequency + + + + + A frequency which is relatively low. + PATOC:GVG + + + + + + + + + quality + PATO:0000382 + obsolete gender value + true + + + + + + + + + A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes. + quality + PATO:0000383 + + + female + + + + + A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes. + MGED:MGED + + + + + + + + + A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes. + quality + PATO:0000384 + + + male + + + + + A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes. + MGED:MGED + + + + + + + + + quality + PATO:0000385 + obsolete hardness value + true + + + + + + + + + + + + + + + + + + + + + A hardness quality of being rigid and resistant to pressure. + + quality + firm + impenetrable + tough + PATO:0000386 + + + + hard + + + + + A hardness quality of being rigid and resistant to pressure. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A hardness quality of giving little resistance to pressure. + + quality + PATO:0000387 + + + + soft + + + + + A hardness quality of giving little resistance to pressure. + PATOC:GVG + + + + + + + + + quality + PATO:0000388 + obsolete intensity value + true + + + + + + + + + A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course. + + quality + PATO:0000389 + + + + acute + + + + + A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course. + dictionary:reference + + + + + + + + + quality + PATO:0000390 + obsolete extreme + true + + + + + + + + + quality + PATO:0000391 + obsolete intense + true + + + + + + + + + quality + PATO:0000392 + obsolete limited + true + + + + + + + + + quality + PATO:0000393 + obsolete maximal + true + + + + + + + + + An intensity which is less than moderate in type or degree or effect or force. + quality + PATO:0000394 + + + + mild intensity + + + + + An intensity which is less than moderate in type or degree or effect or force. + PATOC:GVG + + + + + + + + + An intensity which is less than extreme in type or degree or effect or force. + quality + PATO:0000395 + + + + moderate intensity + + + + + An intensity which is less than extreme in type or degree or effect or force. + Merriam-Webster:Merriam-Webster + + + + + + + + + An intensity which is extremely bad or unpleasant in type or degree or effect or force. + quality + PATO:0000396 + + + + severe intensity + + + + + An intensity which is extremely bad or unpleasant in type or degree or effect or force. + WordNet:WordNet + + + + + + + + + quality + PATO:0000397 + + obsolete slight + true + + + + + + + + + quality + PATO:0000398 + obsolete vigorous + true + + + + + + + + + quality + PATO:0000399 + obsolete life span value + true + + + + + + + + + quality + PATO:0000400 + obsolete morphology value + true + + + + + + + + + quality + PATO:0000401 + obsolete shape value + true + + + + + + + + + + A branchiness quality inhering in a bearer by virtue of the bearer's having branches. + + ramified + ramiform + quality + PATO:0000402 + + + + branched + + + + + A branchiness quality inhering in a bearer by virtue of the bearer's having branches. + WordNet:WordNet + + + + + + + + + A concave quality inhering in a bearer by virtue of the bearer's resembling a groove or fissure. + quality + PATO:0000403 + + + + cleft + + + + + A concave quality inhering in a bearer by virtue of the bearer's resembling a groove or fissure. + WordNet:WordNet + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals). + + PATO:0001363 + spiral + quality + helical + helicoid + helicoidal + helix-shaped + PATO:0000404 + + + + coiled + + + + + A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals). + WordNet:WordNet + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having parallel chains in undulate fashion on the border. + quality + PATO:0000405 + + + + curled + + + + + A shape quality inhering in a bearer by virtue of the bearer's having parallel chains in undulate fashion on the border. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend. + bowing + quality + curled + PATO:0000406 + + + curved + + + + + A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend. + WordNet:WordNet + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having a horizontal surface without a slope, tilt, or curvature. + quality + plate-like + PATO:0000407 + + + + flat + + + + + A quality inhering in a bearer by virtue of the bearer's having a horizontal surface without a slope, tilt, or curvature. + web:http://www.merriam-webster.com/ + + + + + + + + + + + true + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting an equatorial diameter greater than its polar diameter. + oblate spheroid + quality + PATO:0000409 + + + + oblate + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting an equatorial diameter greater than its polar diameter. + WordNet:WordNet + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having leaflets or leaflets-like structures on each side of a common axis. + quality + feather-like + of a leaf shape + PATO:0000410 + + + + pinnate + + + + + A shape quality inhering in a bearer by virtue of the bearer's having leaflets or leaflets-like structures on each side of a common axis. + WordNet:WordNet + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center. + quality + round + rounded + PATO:0000411 + + + + circular + + + + + A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + + true + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having an equal-sided rectangular form. + quality + PATO:0000413 + + + square + + + + + A shape quality inhering in a bearer by virtue of the bearer's having an equal-sided rectangular form. + answers.com:answers.com + + + + + + + + + A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches. + + quality + PATO:0000414 + + + + unbranched + + + + + A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals). + + quality + PATO:0000415 + + + + uncoiled + + + + + A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals). + WordNet:WordNet + + + + + + + + + quality + PATO:0000416 + obsolete count value + true + + + + + + + + + quality + PATO:0000417 + obsolete absolute number value + true + + + + + + + + + quality + PATO:0000418 + obsolete relative number value + true + + + + + + + + + + + true + + + + + + + + + + + true + + + + + + + + + quality + PATO:0000421 + obsolete nutritional value + true + + + + + + + + + A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth. + + quality + PATO:0000422 + + + auxotrophic + + + + + A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth. + Wikipedia:http://en.wikipedia.org/wiki/Auxotrophic + + + + + + + + + A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth. + + quality + PATO:0000423 + + + prototrophic + + + + + A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth. + Wikipedia:http://en.wikipedia.org/wiki/Prototrophic + + + + + + + + + quality + PATO:0000424 + obsolete occurence value + true + + + + + + + + + quality + PATO:0000425 + + obsolete continual + true + + + + + + + + + + + true + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly. + + quality + PATO:0000427 + + + + recurrent + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances. + + quality + PATO:0000428 + + + + sporadic + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances. + PATO:MAH + WordNet:WordNet + + + + + + + + + + + true + + + + + + + + + quality + PATO:0000430 + obsolete unique + true + + + + + + + + + quality + PATO:0000431 + obsolete odor value + true + + + + + + + + + quality + PATO:0000432 + obsolete parental type value + true + + + + + + + + + A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a father. + quality + PATO:0000433 + + obsolete paternal + true + + + + + A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a father. + WordNet:WordNet + + + + + + + + + A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a mother. + quality + PATO:0000434 + + obsolete maternal + true + + + + + A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a mother. + WordNet:WordNet + + + + + + + + + quality + PATO:0000435 + obsolete pattern value + true + + + + + + + + + quality + PATO:0000436 + obsolete concrete + true + + + + + + + + + quality + PATO:0000437 + obsolete sleep pattern value + true + + + + + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation. + + uniform + quality + constant + PATO:0000438 + + invariant + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation. + Dictionary:http://dictionary.reference.com/ + + + + + + + + + quality + PATO:0000439 + obsolete perseverative + true + + + + + + + + + A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement. + + quality + PATO:0000440 + + + + regular spatial pattern + + + + + A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement. + PATOC:GVG + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's marked by tedious repetition. + quality + PATO:0000441 + + repetitive + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's marked by tedious repetition. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A sleep pattern quality inhering in a bearer by virtue of the bearer's inability to sleep. + quality + PATO:0000442 + + + Consider NBO:0000422. + obsolete insomnia + true + + + + + A sleep pattern quality inhering in a bearer by virtue of the bearer's inability to sleep. + WordNet:WordNet + + + + + + + + + A sleep pattern quality inhering in a bearer by virtue of the bearer's disrupted sleep during normal sleeping period; often accompanied by cataplexy, sleep paralysis. + quality + PATO:0000443 + + + Consider NBO:0000423 + obsolete narcolepsy + true + + + + + + + + + quality + PATO:0000444 + obsolete percentage value + true + + + + + + + + + quality + PATO:0000445 + obsolete relative percentage value + true + + + + + + + + + quality + PATO:0000446 + obsolete absolute percentage value + true + + + + + + + + + quality + PATO:0000447 + obsolete decreased percentage + true + + + + + + + + + quality + PATO:0000448 + obsolete high percentage + true + + + + + + + + + quality + PATO:0000449 + obsolete increased percentage + true + + + + + + + + + quality + PATO:0000450 + obsolete low percentage + true + + + + + + + + + quality + PATO:0000451 + obsolete pilosity value + true + + + + + + + + + quality + PATO:0000452 + obsolete relative pilosity value + true + + + + + + + + + + A pilosity quality inhering in a bearer by virtue of the bearer's lack of hairs or bristles. + quality + hairless + PATO:0000453 + + + glabrous + + + + + A pilosity quality inhering in a bearer by virtue of the bearer's lack of hairs or bristles. + PATOC:CJM + PATOC:GVG + + + + + + + + + A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections. + quality + PATO:0000454 + + + hairy + + + + + A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections. + PATOC:GVG + + + + + + + + + A maturity quality inhering in a bearer by virtue of the bearer's having arrived at the onset of puberty (the age at which sex glands become functional) but not yet fully mature. + quality + PATO:0000455 + + pubescent + + + + + A maturity quality inhering in a bearer by virtue of the bearer's having arrived at the onset of puberty (the age at which sex glands become functional) but not yet fully mature. + WordNet:WordNet + + + + + + + + + quality + PATO:0000456 + obsolete abstract + true + + + + + + + + + quality + PATO:0000457 + obsolete deviation(from_normal) value + true + + + + + + + + + quality + PATO:0000458 + obsolete presence value + true + + + + + + + + + quality + PATO:0000459 + obsolete relative quantity value + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's deviation from normal or average. + + quality + aberrant + atypia + atypical + defective + PATO:0000460 + + + + abnormal + + + + + A quality inhering in a bearer by virtue of the bearer's deviation from normal or average. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average. + + quality + average + PATO:0000461 + + + + normal + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + + A quality denoting the lack of an entity. + + PATO:0001996 + absence + absent from organism + quality + PATO:0000462 + + + + See documentation here: http://code.google.com/p/phenotype-ontologies/wiki/ModelingOfAbsence + absent + + + + + A quality denoting the lack of an entity. + thefreedictionary.:thefreedictionary. + + + + + + + + + A quality inhering in a bearer by virtue of being clearly visible. + + quality + distinct + PATO:0000463 + + + conspicuous + + + + + A quality inhering in a bearer by virtue of being clearly visible. + thefreedictionary:thefreedictionary + + + + + + + + + A quality inhering in a bearer by virtue of not being clearly visible. + + quality + faint + PATO:0000464 + + + inconspicuous + + + + + A quality inhering in a bearer by virtue of not being clearly visible. + thefreedictionary:thefreedictionary + + + + + + + + + quality + PATO:0000465 + obsolete marked + true + + + + + + + + + quality + PATO:0000466 + obsolete none + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's existence. + + quality + present in organism + PATO:0000467 + + + present + + + + + A quality inhering in a bearer by virtue of the bearer's existence. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + quality + PATO:0000469 + obsolete high + true + + + + + + + + + + + + + + + + + + + + + An amount which is relatively high. + + PATO:0000420 + PATO:0000650 + increased number + present in greater numbers in organism + supernumerary + quality + accessory + increased + PATO:0000470 + + increased amount + + + + + An amount which is relatively high. + PATOC:GVG + + + + + + + + + quality + PATO:0000471 + obsolete low + true + + + + + + + + + quality + PATO:0000472 + obsolete quality value + true + + + + + + + + + quality + PATO:0000473 + obsolete relative_quality value + true + + + + + + + + + quality + PATO:0000474 + obsolete shattering value + true + + + + + + + + + quality + PATO:0000475 + obsolete threshability value + true + + + + + + + + + quality + PATO:0000476 + obsolete bad value + true + + + + + + + + + quality + PATO:0000477 + obsolete good value + true + + + + + + + + + quality + PATO:0000478 + obsolete poor value + true + + + + + + + + + quality + PATO:0000479 + obsolete regulation value + true + + + + + + + + + quality + PATO:0000480 + obsolete positive regulation + true + + + + + + + + + quality + PATO:0000481 + obsolete negative regulation + true + + + + + + + + + quality + PATO:0000482 + obsolete response value + true + + + + + + + + + quality + PATO:0000483 + obsolete tactile hyperresponsive + true + + + + + + + + + quality + PATO:0000484 + obsolete tactile hyporesponsive + true + + + + + + + + + quality + PATO:0000485 + obsolete mild response + true + + + + + + + + + quality + PATO:0000486 + obsolete moderate response + true + + + + + + + + + + A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent. + + responsive + quality + PATO:0000487 + + + + responsive to + + + + + A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent. + PATOC:GVG + + + + + + + + + A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent. + + unresponsive + quality + PATO:0000488 + + + + unresponsive to + + + + + A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent. + PATOC:GVG + + + + + + + + + quality + PATO:0000489 + obsolete vigorous response + true + + + + + + + + + quality + PATO:0000490 + obsolete rhythym value + true + + + + + + + + + quality + PATO:0000491 + obsolete sensitivity value + true + + + + + + + + + quality + PATO:0000492 + obsolete absolute rhythym value + true + + + + + + + + + quality + PATO:0000493 + obsolete amplitude value + true + + + + + + + + + quality + PATO:0000494 + obsolete period value + true + + + + + + + + + quality + PATO:0000495 + obsolete persistence value + true + + + + + + + + + quality + PATO:0000496 + obsolete phase value + true + + + + + + + + + quality + PATO:0000497 + obsolete relative rhythym value + true + + + + + + + + + + + + + + + + + + + + + A duration quality of a process which is relatively high. + + PATO:0000715 + high time + increased period + increased time + quality + chronic + prolonged period + slow time + PATO:0000498 + + increased duration + + + + + A duration quality of a process which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A duration quality of a process which is relatively low. + + PATO:0000716 + decreased period + decreased time + low period + shortened period + quality + fast time + PATO:0000499 + + decreased duration + + + + + A duration quality of a process which is relatively low. + PATOC:GVG + + + + + + + + + A phase which occurs earlier than the natural start time. + quality + PATO:0000500 + + advanced phase + + + + + A phase which occurs earlier than the natural start time. + PATOC:GVG + + + + + + + + + A phase which occurs during dark cycle. + quality + PATO:0000501 + + dark phase + + + + + A phase which occurs during dark cycle. + PATOC:GVG + + + + + + + + + A quality of a process which starts later than the natural start time or the reference process. + quality + late + PATO:0000502 + + delayed + + + + + A quality of a process which starts later than the natural start time or the reference process. + PATOC:LC + + + + + + + + + A phase which occurs during the light cycle. + quality + PATO:0000503 + + light phase + + + + + A phase which occurs during the light cycle. + PATOC:GVG + + + + + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm. + + quality + PATO:0000504 + + arrhythmic + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm. + PATOC:GVG + + + + + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm. + + quality + PATO:0000505 + + rhythmic + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm. + PATOC:GVG + + + + + + + + + quality + PATO:0000506 + obsolete absolute sensitivity value + true + + + + + + + + + quality + PATO:0000507 + obsolete disease sensitivity value + true + + + + + + + + + quality + PATO:0000508 + obsolete relative sensitivity value + true + + + + + + + + + quality + PATO:0000509 + obsolete stress sensitivity value + true + + + + + + + + + quality + PATO:0000510 + obsolete temperature sensitivity value + true + + + + + + + + + quality + PATO:0000511 + obsolete absolute disease sensitivity value + true + + + + + + + + + quality + PATO:0000512 + obsolete relative disease sensitivity value + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus. + + insensitive + quality + resistant + PATO:0000513 + + + + insensitive toward + + + + + A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus. + PATOC:GVG + + + + + + + + + quality + PATO:0000514 + obsolete intolerant value + true + + + + + + + + + + A resistance quality inhering in a bearer by virtue of its disposition to endure or being insensitive to a stimulus. + tolerant + quality + PATO:0000515 + + + + tolerant to + + + + + A resistance quality inhering in a bearer by virtue of its disposition to endure or being insensitive to a stimulus. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having sensitivity toward an external stimulus. + + sensitive + quality + PATO:0000516 + + + + sensitive toward + + + + + A quality inhering in a bearer by virtue of the bearer's having sensitivity toward an external stimulus. + PATOC:GVG + + + + + + + + + quality + PATO:0000517 + obsolete abiotic stress sensitivity value + true + + + + + + + + + quality + PATO:0000518 + obsolete chemical sensitivity value + true + + + + + + + + + quality + PATO:0000519 + obsolete humidity sensitivity value + true + + + + + + + + + quality + PATO:0000520 + obsolete radiation sensitivity value + true + + + + + + + + + quality + PATO:0000521 + obsolete drug sensitivity value + true + + + + + + + + + quality + PATO:0000522 + obsolete herbicide sensitivity value + true + + + + + + + + + quality + PATO:0000523 + obsolete insecticide sensitivity value + true + + + + + + + + + quality + PATO:0000524 + obsolete plant growth hormone sensitivity value + true + + + + + + + + + quality + PATO:0000525 + obsolete soil composition sensitivity value + true + + + + + + + + + quality + PATO:0000526 + obsolete absolute drug sensitivity value + true + + + + + + + + + quality + PATO:0000527 + obsolete relative drug sensitivity value + true + + + + + + + + + quality + PATO:0000528 + obsolete drug insensitive + true + + + + + + + + + quality + PATO:0000529 + obsolete drug sensitive + true + + + + + + + + + quality + PATO:0000530 + obsolete soil nutrient sensitivity value + true + + + + + + + + + quality + PATO:0000531 + obsolete macronutrient sensitivity value + true + + + + + + + + + quality + PATO:0000532 + obsolete micronutrient sensitivity value + true + + + + + + + + + quality + PATO:0000533 + obsolete osmotic response sensitivity + true + + + + + + + + + quality + PATO:0000534 + obsolete p h sensitivity value + true + + + + + + + + + quality + PATO:0000535 + obsolete salt sensitivity value + true + + + + + + + + + quality + PATO:0000536 + obsolete water sensitivity value + true + + + + + + + + + quality + PATO:0000537 + obsolete acid sensitivity value + true + + + + + + + + + quality + PATO:0000538 + obsolete alkali sensitivity value + true + + + + + + + + + quality + PATO:0000539 + obsolete drought sensitivity value + true + + + + + + + + + quality + PATO:0000540 + obsolete flooding sensitivity value + true + + + + + + + + + quality + PATO:0000541 + obsolete photosensitivity value + true + + + + + + + + + quality + PATO:0000542 + obsolete absolute photosensitivity value + true + + + + + + + + + quality + PATO:0000543 + obsolete light intensivity sensitivity value + true + + + + + + + + + quality + PATO:0000544 + obsolete light_quality sensitivity value + true + + + + + + + + + quality + PATO:0000545 + obsolete relative photosensitivity value + true + + + + + + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity. + + quality + photoresistant + PATO:0000546 + + + photoinsensitive + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity. + PATOC:GVG + + + + + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's exhibiting photosensitivity. + + quality + PATO:0000547 + + + photosensitive + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's exhibiting photosensitivity. + PATOC:GVG + + + + + + + + + quality + PATO:0000548 + obsolete blue light sensitivity value + true + + + + + + + + + quality + PATO:0000549 + obsolete far red light sensitivity value + true + + + + + + + + + quality + PATO:0000550 + obsolete red light sensitivity value + true + + + + + + + + + quality + PATO:0000551 + obsolete u v light sensitivity value + true + + + + + + + + + quality + PATO:0000552 + obsolete absolute temperature sensitivity value + true + + + + + + + + + quality + PATO:0000553 + obsolete relative temperature sensitivity value + true + + + + + + + + + quality + PATO:0000554 + obsolete cold sensitive + true + + + + + + + + + quality + PATO:0000555 + obsolete heat sensitive + true + + + + + + + + + quality + thermoresistant + PATO:0000556 + obsolete thermoinsensitive + true + + + + + + + + + quality + PATO:0000557 + obsolete thermosensitive + true + + + + + + + + + quality + PATO:0000558 + obsolete size value + true + + + + + + + + + quality + PATO:0000559 + obsolete absolute size value + true + + + + + + + + + quality + PATO:0000560 + obsolete height value + true + + + + + + + + + quality + PATO:0000561 + obsolete length value + true + + + + + + + + + quality + PATO:0000562 + obsolete mass value + true + + + + + + + + + quality + PATO:0000563 + obsolete relative size value + true + + + + + + + + + quality + PATO:0000564 + obsolete thickness value + true + + + + + + + + + quality + PATO:0000565 + obsolete volume value + true + + + + + + + + + quality + :breadth + PATO:0000566 + obsolete width value + true + + + + + + + + + quality + PATO:0000567 + obsolete absolute height value + true + + + + + + + + + quality + PATO:0000568 + obsolete relative height value + true + + + + + + + + + + + + + + + + + + + + + A height which is relatively low. + + quality + short + PATO:0000569 + + decreased height + + + + + A height which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A height which is relatively high. + + quality + tall + PATO:0000570 + + increased height + + + + + A height which is relatively high. + PATOC:GVG + + + + + + + + + quality + PATO:0000571 + obsolete absolute length value + true + + + + + + + + + quality + PATO:0000572 + obsolete relative length value + true + + + + + + + + + + + + + + + + + + + + + A length quality which is relatively large. + + long + quality + PATO:0000573 + + increased length + + + + + A length quality which is relatively large. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A length quality which is relatively small. + + short + quality + shortened + stubby + PATO:0000574 + + decreased length + + + + + A length quality which is relatively small. + PATOC:GVG + + + + + + + + + quality + PATO:0000575 + obsolete absolute mass value + true + + + + + + + + + quality + PATO:0000576 + obsolete relative mass value + true + + + + + + + + + quality + PATO:0000577 + obsolete weight value + true + + + + + + + + + + + true + + + + + + + + + + + true + + + + + + + + + quality + PATO:0000580 + obsolete absolute weight value + true + + + + + + + + + quality + PATO:0000581 + obsolete relative weight value + true + + + + + + + + + + + + + + + + + + + + + A weight which is relatively high. + + heavy + high weight + quality + PATO:0000582 + + increased weight + + + + + A weight which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A weight which is relatively low. + + light weight + low weight + quality + PATO:0000583 + + decreased weight + + + + + A weight which is relatively low. + PATOC:GVG + + + + + + + + + An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ). + + hypertrophy + quality + PATO:0000584 + + + hypertrophic + + + + + An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ). + PATOC:MAH + + + + + + + + + A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ). + + PATO:0000412 + shrunken + quality + PATO:0000585 + + + hypotrophic + + + + + A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ). + PATOC:MAH + + + + + + + + + + + + + + + + + + + + + A size quality which is relatively high. + + PATO:0001202 + quality + big + enlarged + expanded + great + large + PATO:0000586 + + increased size + + + + + A size quality which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A size quality which is relatively low. + + hypoplasia + underdeveloped + quality + reduced + small + tiny + PATO:0000587 + + decreased size + + + + + A size quality which is relatively low. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being a remnant structure from earlier development or evolution. + quality + PATO:0000588 + + May be part of an animal (such as an organ or bone) that is no longer used by the species and has therefore become smaller or less developed. + vestigial + + + + + A quality inhering in a bearer by virtue of the bearer's being a remnant structure from earlier development or evolution. + PATOC:MAH + + + + + + + + + quality + PATO:0000589 + obsolete absolute thickness value + true + + + + + + + + + quality + PATO:0000590 + obsolete relative thickness value + true + + + + + + + + + + + + + + + + + + + + + A thickness which is relatively high. + + high thickness + stout + thickened + quality + thick + PATO:0000591 + + + increased thickness + + + + + A thickness which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A thickness which is relatively low. + + low thickness + quality + slender + thin + PATO:0000592 + + + decreased thickness + + + + + A thickness which is relatively low. + PATOC:GVG + + + + + + + + + quality + PATO:0000593 + obsolete absolute volume value + true + + + + + + + + + quality + PATO:0000594 + obsolete relative volume value + true + + + + + + + + + + + + + + + + + + + + + A volume which is relatively high. + + high volume + quality + large volume + PATO:0000595 + + + increased volume + + + + + A volume which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A volume which is relatively low. + + low volume + quality + small volume + PATO:0000596 + + + decreased volume + + + + + A volume which is relatively low. + PATOC:GVG + + + + + + + + + quality + PATO:0000597 + obsolete absolute width value + true + + + + + + + + + quality + PATO:0000598 + obsolete relative width value + true + + + + + + + + + + + + + + + + + + + + + A width which is relatively small. + + quality + narrow + PATO:0000599 + + decreased width + + + + + A width which is relatively small. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A width which is relatively large. + + quality + broad + wide + wide/broad + PATO:0000600 + + increased width + + + + + A width which is relatively large. + PATOC:GVG + + + + + + + + + quality + PATO:0000601 + obsolete spatial value + true + + + + + + + + + quality + PATO:0000602 + obsolete angle value + true + + + + + + + + + quality + PATO:0000603 + obsolete closure value + true + + + + + + + + + quality + PATO:0000604 + obsolete orientation value + true + + + + + + + + + quality + location + position + PATO:0000605 + obsolete placement value + true + + + + + + + + + quality + PATO:0000606 + obsolete absolute angle value + true + + + + + + + + + quality + PATO:0000607 + obsolete relative angle value + true + + + + + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view. + + quality + blocked + PATO:0000608 + + closed + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view. + answers.com:answers.com + + + + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording not completed blocked passage or view. + quality + PATO:0000609 + + closure incomplete + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording not completed blocked passage or view. + PATOC:GVG + + + + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view. + + quality + PATO:0000610 + + open + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view. + answers.com:answers.com + + + + + + + + + quality + PATO:0000611 + obsolete absolute orientation value + true + + + + + + + + + quality + PATO:0000612 + obsolete relative orientation value + true + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation. + + quality + PATO:0000613 + + disoriented + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation. + PATOC:GVG + + + + + + + + + A pattern where all the repeated elements are oriented in the same direction. + + quality + PATO:0000614 + + oriented + + + + + A pattern where all the repeated elements are oriented in the same direction. + PATOC:MAH + + + + + + + + + An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally anterior structures. + quality + anterioralized + PATO:0000615 + + wholly anterioralized + + + + + An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally anterior structures. + PATOC:GVG + + + + + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's lacking symmetry. + asymmetric + asymmetry + quality + PATO:0000616 + + + + asymmetrical + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's lacking symmetry. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length. + angled + quality + PATO:0000617 + + bent + + + + + A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length. + PATOC:MAH + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's having two sides; two-sided. + quality + PATO:0000618 + + + bilateral + + + + + A positional quality inhering in a bearer by virtue of the bearer's having two sides; two-sided. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being overfilled. + + quality + PATO:0000619 + + crowded + + + + + A positional quality inhering in a bearer by virtue of the bearer's being overfilled. + WordNet:WordNet + + + + + + + + + A dorsalized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally dorsal structures. + quality + dorsalized + PATO:0000620 + + + wholly dorsalized + + + + + A dorsalized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally dorsal structures. + PATOC:melissa + + + + + + + + + + + true + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being upright in position or posture. + upright + quality + PATO:0000622 + + erect + + + + + A positional quality inhering in a bearer by virtue of the bearer's being upright in position or posture. + WordNet:WordNet + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's protruding or projecting from the body. + quality + prolapse + prolapsed + PATO:0000623 + + exserted + + + + + A quality inhering in a bearer by virtue of the bearer's protruding or projecting from the body. + sdvc:sdvc + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's becoming joined together with an additional entity. + inserted + quality + introduced into + PATO:0000624 + + + inserted into + + + + + A spatial quality inhering in a bearer by virtue of the bearer's becoming joined together with an additional entity. + PATOC:nw + + + + + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being reversed in position, order, or condition. + quality + backward + reversed + PATO:0000625 + + + inverted + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being reversed in position, order, or condition. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being moved or displaced to one side so as to make lateral. + quality + PATO:0000626 + + lateralized + + + + + A positional quality inhering in a bearer by virtue of the bearer's being moved or displaced to one side so as to make lateral. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A spatial pattern quality inhering in a bearer by virtue of the bearer's being confined or restricted to a particular location. + focal + localised + quality + PATO:0000627 + + + + localized + + + + + A spatial pattern quality inhering in a bearer by virtue of the bearer's being confined or restricted to a particular location. + WordNet:WordNet + + + + + + + + + A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position. + PATO:0000621 + ectopic + mislocalized + quality + PATO:0000628 + + + mislocalised + + + + + A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's having mistakenly taken course, way, or passage; ill-routed. + quality + PATO:0000629 + + misrouted + + + + + A positional quality inhering in a bearer by virtue of the bearer's having mistakenly taken course, way, or passage; ill-routed. + NDI:NDI + + + + + + + + + A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally posterior structures. + quality + posterioralized + PATO:0000630 + + + wholly posterioralized + + + + + A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally posterior structures. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being stretched out and lying at full length along the ground. + quality + PATO:0000631 + + prostrate + + + + + A positional quality inhering in a bearer by virtue of the bearer's being stretched out and lying at full length along the ground. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division by a longitudinal plane into similar halves. + symmetric + quality + PATO:0000632 + + + + similar pattern in both halves + symmetrical + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division by a longitudinal plane into similar halves. + PATOC:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled. + + quality + PATO:0000633 + + uncrowded + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled. + PATOC:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's involvement of only one part or side. + quality + PATO:0000634 + + + unilateral + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's involvement of only one part or side. + WordNet:WordNet + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's not being confined or restricted to a particular location. + quality + PATO:0000635 + + + unlocalised + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's not being confined or restricted to a particular location. + WordNet:WordNet + + + + + + + + + A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally ventral structures. + quality + ventralized + PATO:0000636 + + + wholly ventralized + + + + + A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally ventral structures. + PATOC:GVG + + + + + + + + + quality + PATO:0000637 + obsolete structure value + true + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's consisting of blebbing of the nucleus and DNA fragmentation due to the cell undergoing a specific form of programmed cell death termed apoptosis. + GO:0006915 + quality + PATO:0000638 + + apoptotic + + + + + A structural quality inhering in a bearer by virtue of the bearer's consisting of blebbing of the nucleus and DNA fragmentation due to the cell undergoing a specific form of programmed cell death termed apoptosis. + PATOC:GVG + + + + + + + + + + + + + + + + + A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process. + + degeneration + quality + PATO:0000639 + + + degenerate + + + + + A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process. + PATOC:PortlandMeetingFeb2015 + PATOC:mb + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's exhibiting an alteration in size, shape or organization of its constituent cells. + dysplasia + quality + PATO:0000640 + + + dysplastic + + + + + A structural quality inhering in a bearer by virtue of the bearer's exhibiting an alteration in size, shape or organization of its constituent cells. + PATOC:MAH + + + + + + + + + quality + PATO:0000641 + obsolete deposition defective + true + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity. + + fused + fused to + quality + coalesced + joined with + merged with + PATO:0000642 + + + + fused with + + + + + A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it. + quality + PATO:0000643 + + + herniated + + + + + A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it. + spinalstenosis:spinalstenosis + + + + + + + + + A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells. + + PATO:0000943 + hyperplasia + quality + overdeveloped + PATO:0000644 + + + hyperplastic + + + + + A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells. + Wikipedia:http://en.wikipedia.org/wiki/Hyperplastic + + + + + + + + + + A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue. + + PATO:0000942 + hypoplasia + quality + underdeveloped + PATO:0000645 + + + hypoplastic + + + + + A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue. + PATOC:GVG + + + + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's being distorted during formation. + malformation + quality + PATO:0000646 + + + malformed + + + + + A morphological quality inhering in a bearer by virtue of the bearer's being distorted during formation. + PATOC:MAH + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's undergoing unprogrammed cell death. + quality + PATO:0000647 + + + necrotic + + + + + A structural quality inhering in a bearer by virtue of the bearer's undergoing unprogrammed cell death. + Wikipedia:http://en.wikipedia.org/wiki/Necrotic + + + + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's being blocked or filled with obstacles or an obstacle. + quality + PATO:0000648 + + + obstructed + + + + + A morphological quality inhering in a bearer by virtue of the bearer's being blocked or filled with obstacles or an obstacle. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + + true + + + + + + + + + + + true + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity. + + unfused + quality + PATO:0000651 + + + unfused from + + + + + A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity. + PATOC:nw + + + + + + + + + quality + PATO:0000652 + obsolete substance value + true + + + + + + + + + quality + PATO:0000653 + obsolete addictive substance value + true + + + + + + + + + quality + PATO:0000654 + obsolete alcochol value + true + + + + + + + + + quality + PATO:0000655 + obsolete amphetamine value + true + + + + + + + + + quality + PATO:0000656 + obsolete time_quantity + true + + + + + + + + + quality + PATO:0000657 + obsolete length_quantity + true + + + + + + + + + quality + PATO:0000658 + obsolete metamphetamine value + true + + + + + + + + + quality + PATO:0000659 + obsolete temparature_quantity + true + + + + + + + + + quality + PATO:0000660 + obsolete angle_quantity + true + + + + + + + + + quality + PATO:0000661 + obsolete solid substance value + true + + + + + + + + + quality + PATO:0000662 + obsolete volume_quantity + true + + + + + + + + + quality + PATO:0000663 + obsolete occurrent + true + + + + + + + + + quality + PATO:0000664 + obsolete substance_quantity + true + + + + + + + + + A color brightness which is relatively high. + + light + quality + PATO:0000665 + + high brightness + + + + + A color brightness which is relatively high. + PATOC:MAH + + + + + + + + + quality + PATO:0000666 + obsolete energy_quantity + true + + + + + + + + + quality + PATO:0000667 + obsolete liquid substance value + true + + + + + + + + + quality + PATO:0000668 + obsolete mass_quantity + true + + + + + + + + + quality + PATO:0000669 + obsolete concentration_unit + true + + + + + + + + + quality + PATO:0000670 + obsolete saccharin versus water value + true + + + + + + + + + quality + PATO:0000671 + obsolete water value + true + + + + + + + + + quality + PATO:0000672 + obsolete unit + true + + + + + + + + + quality + PATO:0000673 + obsolete temperature value + true + + + + + + + + + quality + PATO:0000674 + obsolete absolute temperature value + true + + + + + + + + + quality + PATO:0000675 + obsolete body temperature value + true + + + + + + + + + quality + PATO:0000676 + obsolete relative temperature value + true + + + + + + + + + + + true + + + + + + + + + + + true + + + + + + + + + quality + PATO:0000679 + obsolete temporal value + true + + + + + + + + + quality + PATO:0000680 + obsolete absolute temporal value + true + + + + + + + + + quality + PATO:0000681 + obsolete incidence value + true + + + + + + + + + quality + PATO:0000682 + obsolete rate value + true + + + + + + + + + quality + PATO:0000683 + obsolete relative temporal value + true + + + + + + + + + quality + PATO:0000684 + obsolete absolute incidence value + true + + + + + + + + + quality + PATO:0000685 + obsolete relative incidence value + true + + + + + + + + + quality + PATO:0000686 + obsolete absolute rate value + true + + + + + + + + + quality + PATO:0000687 + obsolete relative rate value + true + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase. + + quality + PATO:0000688 + + asynchronous + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase. + WordNet:WordNet + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent. + + PATO:0000429 + uninterrupted + quality + PATO:0000689 + + continuous + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions. + + PATO:0000426 + interrupted + quality + intermittent + PATO:0000690 + + discontinuous + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + + true + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's origin or development at an unusual time or out of the regular sequence. + quality + PATO:0000692 + + heterochronic + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's origin or development at an unusual time or out of the regular sequence. + answers.com:answers.com + + + + + + + + + quality + PATO:0000693 + obsolete late + true + + + + + + + + + A quality of a process which starts earlier than the natural start time or the reference process. + PATO:0000691 + PATO:0002086 + advanced + quality + early + precocious + PATO:0000694 + + premature + + + + + A quality of a process which starts earlier than the natural start time or the reference process. + PATO:LC + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase. + + quality + PATO:0000695 + + synchronous + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase. + PATOC:GVG + + + + + + + + + quality + PATO:0000696 + obsolete texture value + true + + + + + + + + + quality + PATO:0000697 + obsolete relative texture value + true + + + + + + + + + quality + PATO:0000698 + obsolete floury + true + + + + + + + + + quality + PATO:0000699 + obsolete glutinous + true + + + + + + + + + A texture quality inhering in a bearer by virtue of the bearer's irregular surface. + + PATO:0001616 + coarse + quality + PATO:0000700 + + + rough + + + + + A texture quality inhering in a bearer by virtue of the bearer's irregular surface. + PATOC:GVG + + + + + + + + + A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities. + + quality + PATO:0000701 + + + smooth + + + + + A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities. + PATOC:GVG + + + + + + + + + quality + PATO:0000702 + obsolete threshold value + true + + + + + + + + + quality + PATO:0000703 + obsolete absolute threshold value + true + + + + + + + + + quality + PATO:0000704 + obsolete pain threshold value + true + + + + + + + + + quality + PATO:0000705 + obsolete relative threshold value + true + + + + + + + + + + + + + + + + + + + + + A threshold which is relatively high. + + PATO:0000709 + high threshold + quality + PATO:0000706 + + + + increased threshold + + + + + A threshold which is relatively high. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + + + + + + + + + + + + + A threshold which is relatively low. + + PATO:0000707 + low threshold + quality + PATO:0000708 + + + + decreased threshold + + + + + A threshold which is relatively low. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + quality + PATO:0000710 + obsolete time value + true + + + + + + + + + quality + PATO:0000711 + obsolete absolute time value + true + + + + + + + + + quality + PATO:0000712 + obsolete bouts value + true + + + + + + + + + quality + PATO:0000713 + obsolete relative time value + true + + + + + + + + + quality + PATO:0000714 + obsolete latency value + true + + + + + + + + + + + true + + + + + + + + + + + true + + + + + + + + + quality + PATO:0000717 + obsolete viability value + true + + + + + + + + + A viability quality inhering in a population by virtue of the bearer's long term survival inability. + quality + PATO:0000718 + + + lethal (sensu genetics) + + + + + A viability quality inhering in a population by virtue of the bearer's long term survival inability. + PATOC:GVG + + + + + + + + + A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population. + quality + PATO:0000719 + + + viable + + + + + A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population. + PATOC:GVG + + + + + + + + + quality + PATO:0000720 + obsolete yield value + true + + + + + + + + + quality + PATO:0000721 + obsolete absolute yield value + true + + + + + + + + + quality + PATO:0000722 + obsolete relative yield value + true + + + + + + + + + quality + PATO:0000723 + obsolete high yield + true + + + + + + + + + quality + PATO:0000724 + obsolete low yield + true + + + + + + + + + quality + PATO:0000725 + obsolete function value + true + + + + + + + + + quality + PATO:0000726 + obsolete autonomic function value + true + + + + + + + + + quality + PATO:0000727 + obsolete behavioral function value + true + + + + + + + + + quality + PATO:0000728 + obsolete metabolic function value + true + + + + + + + + + quality + PATO:0000729 + obsolete physiological function value + true + + + + + + + + + quality + PATO:0000730 + obsolete relative function value + true + + + + + + + + + quality + PATO:0000731 + obsolete body position value + true + + + + + + + + + quality + PATO:0000732 + obsolete body tone value + true + + + + + + + + + quality + PATO:0000733 + obsolete piloerection value + true + + + + + + + + + quality + PATO:0000734 + obsolete abdominal tone value + true + + + + + + + + + quality + PATO:0000735 + obsolete limb tone value + true + + + + + + + + + quality + PATO:0000736 + obsolete dysfunctional value + true + + + + + + + + + quality + PATO:0000737 + obsolete functional value + true + + + + + + + + + quality + PATO:0000738 + obsolete enzyme function value + true + + + + + + + + + quality + PATO:0000739 + obsolete absolute enzyme function value + true + + + + + + + + + quality + PATO:0000740 + obsolete relative enzyme function value + true + + + + + + + + + quality + PATO:0000741 + obsolete high enzyme function value + true + + + + + + + + + quality + PATO:0000742 + obsolete low enzyme function value + true + + + + + + + + + quality + PATO:0000743 + obsolete arousal value + true + + + + + + + + + quality + PATO:0000744 + obsolete balance value + true + + + + + + + + + quality + PATO:0000745 + obsolete behavioral quality value + true + + + + + + + + + quality + PATO:0000746 + obsolete consumption value + true + + + + + + + + + quality + PATO:0000747 + obsolete coordination value + true + + + + + + + + + quality + PATO:0000748 + obsolete discrimination value + true + + + + + + + + + quality + PATO:0000749 + obsolete gait value + true + + + + + + + + + quality + PATO:0000750 + obsolete learning and memory value + true + + + + + + + + + quality + PATO:0000751 + obsolete locomotor activity value + true + + + + + + + + + quality + PATO:0000752 + obsolete mating value + true + + + + + + + + + quality + PATO:0000753 + obsolete spontaneous activity value + true + + + + + + + + + quality + PATO:0000754 + obsolete startle response + true + + + + + + + + + quality + PATO:0000755 + obsolete vocalization value + true + + + + + + + + + quality + PATO:0000756 + obsolete transfer arousal value + true + + + + + + + + + + A balance quality inhering in a bearer by virtue of the bearer's having balance. + + quality + PATO:0000757 + + balanced + + + + + A balance quality inhering in a bearer by virtue of the bearer's having balance. + PATOC:GVG + + + + + + + + + A balance quality inhering in a bearer by virtue of the bearer's lacking balance. + + quality + PATO:0000758 + + unbalanced + + + + + A balance quality inhering in a bearer by virtue of the bearer's lacking balance. + PATOC:GVG + + + + + + + + + + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting paralytic behaviour when subjected to mechanical shock. + quality + PATO:0000759 + + + bang sensitive + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting paralytic behaviour when subjected to mechanical shock. + PATOC:flybase + + + + + + + + + + + + + + + + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity. + + hyperactive + quality + PATO:0000760 + + increased behavioural activity + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity. + + hypoactive + quality + PATO:0000761 + + decreased behavioural activity + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity. + PATOC:GVG + + + + + + + + + Diminished, damaged, or weakened. + PATO:0001624 + quality + PATO:0000762 + + obsolete impaired + true + + + + + Diminished, damaged, or weakened. + answers.com:answers.com + + + + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's being affected by loss of the ability to move a body part. + palsy + quality + PATO:0000763 + + paralysed + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's being affected by loss of the ability to move a body part. + PATOC:GVG + + + + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's receiving or being subjected to an action without responding or initiating an action in return. + quality + PATO:0000764 + + passive + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's receiving or being subjected to an action without responding or initiating an action in return. + www.answers.com:www.answers.com + + + + + + + + + quality + PATO:0000765 + obsolete absolute consumption value + true + + + + + + + + + quality + PATO:0000766 + obsolete relative consumption value + true + + + + + + + + + A consumption which is relatively high. + high consumption + quality + increased propensity to consume + PATO:0000767 + + + Use GO:0007631 + obsolete increased consumption + true + + + + + A consumption which is relatively high. + PATOC:GVG + + + + + + + + + A consumption which is relatively low. + low consumption + quality + decreased propensity to consume + PATO:0000768 + + + Use GO:0007631 + obsolete decreased consumption + true + + + + + A consumption which is relatively low. + PATOC:GVG + + + + + + + + + + A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement. + + quality + PATO:0000769 + + + coordinated + + + + + A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement. + PATOC:GVG + + + + + + + + + A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement. + + quality + PATO:0000770 + + + uncoordinated + + + + + A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement. + PATOC:GVG + + + + + + + + + + A preference quality in a bearer by virtue of the bearer's disliking a perceived stimulus. + quality + PATO:0000771 + + + + aversion + + + + + A preference quality in a bearer by virtue of the bearer's disliking a perceived stimulus. + PATOC:GVG + + + + + + + + + A preference quality in a bearer by virtue of the bearer's having no preference to a perceived stimulus. + quality + PATO:0000772 + + + + indifference + + + + + A preference quality in a bearer by virtue of the bearer's having no preference to a perceived stimulus. + PATOC:GVG + + + + + + + + + A discrimination quality in a bearer by virtue of the bearer's liking a perceived stimulus. + quality + PATO:0000773 + + + + preference + + + + + A discrimination quality in a bearer by virtue of the bearer's liking a perceived stimulus. + PATOC:GVG + + + + + + + + + quality + PATO:0000774 + obsolete bizarre gate + true + + + + + + + + + quality + PATO:0000775 + obsolete learning value + true + + + + + + + + + quality + PATO:0000776 + obsolete memory value + true + + + + + + + + + quality + PATO:0000777 + obsolete long term memory value + true + + + + + + + + + quality + PATO:0000778 + obsolete short term memory value + true + + + + + + + + + quality + PATO:0000779 + obsolete absolute locomotor activity value + true + + + + + + + + + quality + PATO:0000780 + obsolete relative locomotor activity value + true + + + + + + + + + quality + PATO:0000781 + obsolete circulatory function value + true + + + + + + + + + quality + PATO:0000782 + obsolete defensive function value + true + + + + + + + + + quality + PATO:0000783 + obsolete digestive function value + true + + + + + + + + + quality + PATO:0000784 + obsolete excretory function value + true + + + + + + + + + quality + PATO:0000785 + obsolete muscle function value + true + + + + + + + + + quality + PATO:0000786 + obsolete neural function value + true + + + + + + + + + quality + PATO:0000787 + obsolete neurobehavioral function value + true + + + + + + + + + quality + PATO:0000788 + obsolete reproductive function value + true + + + + + + + + + quality + PATO:0000789 + obsolete respiratory function value + true + + + + + + + + + quality + PATO:0000790 + obsolete heart rate value + true + + + + + + + + + quality + PATO:0000791 + obsolete immune function value + true + + + + + + + + + quality + PATO:0000792 + obsolete repair function value + true + + + + + + + + + quality + PATO:0000793 + obsolete immubocompetent value + true + + + + + + + + + quality + PATO:0000794 + obsolete immunodeficient value + true + + + + + + + + + quality + PATO:0000795 + obsolete healing value + true + + + + + + + + + quality + PATO:0000796 + obsolete regeneration value + true + + + + + + + + + quality + PATO:0000797 + obsolete urination value + true + + + + + + + + + quality + PATO:0000798 + obsolete defecation value + true + + + + + + + + + quality + PATO:0000799 + obsolete muscle elevation value + true + + + + + + + + + quality + PATO:0000800 + obsolete muscle strength value + true + + + + + + + + + quality + PATO:0000801 + obsolete motor function value + true + + + + + + + + + quality + PATO:0000802 + obsolete sensory function value + true + + + + + + + + + quality + PATO:0000803 + obsolete tactile response value + true + + + + + + + + + quality + PATO:0000804 + obsolete motor performance value + true + + + + + + + + + quality + PATO:0000805 + obsolete auditory value + true + + + + + + + + + quality + PATO:0000806 + obsolete olfactory value + true + + + + + + + + + quality + PATO:0000807 + obsolete proprioreception value + true + + + + + + + + + quality + PATO:0000808 + obsolete reflex value + true + + + + + + + + + quality + PATO:0000809 + obsolete taste value + true + + + + + + + + + quality + PATO:0000810 + obsolete touch value + true + + + + + + + + + quality + PATO:0000811 + obsolete visual value + true + + + + + + + + + quality + PATO:0000812 + obsolete odor acuity value + true + + + + + + + + + quality + PATO:0000813 + obsolete odor type value + true + + + + + + + + + quality + PATO:0000814 + obsolete taste acuity value + true + + + + + + + + + quality + PATO:0000815 + obsolete absolute odor acuity value + true + + + + + + + + + quality + PATO:0000816 + obsolete relative odor acuity value + true + + + + + + + + + quality + PATO:0000817 + obsolete anosmia + true + + + + + + + + + quality + PATO:0000818 + obsolete concentration_quantity + true + + + + + + + + + quality + PATO:0000819 + obsolete quantity + true + + + + + + + + + quality + PATO:0000820 + obsolete absolute taste acuity value + true + + + + + + + + + quality + PATO:0000821 + obsolete relative taste acuity value + true + + + + + + + + + quality + PATO:0000822 + obsolete taste type value + true + + + + + + + + + quality + PATO:0000823 + obsolete quinine taste + true + + + + + + + + + quality + PATO:0000824 + obsolete water taste + true + + + + + + + + + quality + PATO:0000825 + obsolete visual ability value + true + + + + + + + + + quality + PATO:0000826 + obsolete visual acuity value + true + + + + + + + + + quality + PATO:0000827 + obsolete visual threshold value + true + + + + + + + + + quality + PATO:0000828 + obsolete visual placing value + true + + + + + + + + + quality + PATO:0000829 + obsolete absolute visual ability value + true + + + + + + + + + quality + PATO:0000830 + obsolete relative visual ability value + true + + + + + + + + + quality + PATO:0000831 + obsolete absolute visual acuity value + true + + + + + + + + + quality + PATO:0000832 + obsolete relative visual acuity value + true + + + + + + + + + quality + PATO:0000833 + obsolete absolute visual threshold value + true + + + + + + + + + quality + PATO:0000834 + obsolete relative visual threshold value + true + + + + + + + + + quality + PATO:0000835 + obsolete auditory acuity value + true + + + + + + + + + quality + PATO:0000836 + obsolete auditory ability value + true + + + + + + + + + quality + PATO:0000837 + obsolete auditory threshold value + true + + + + + + + + + quality + PATO:0000838 + obsolete absolute auditory ability value + true + + + + + + + + + quality + PATO:0000839 + obsolete relative auditory ability value + true + + + + + + + + + quality + PATO:0000840 + obsolete absolute auditory acuity value + true + + + + + + + + + quality + PATO:0000841 + obsolete relative auditory acuity value + true + + + + + + + + + quality + PATO:0000842 + obsolete absolute auditory threshold value + true + + + + + + + + + quality + PATO:0000843 + obsolete relative auditory threshold value + true + + + + + + + + + quality + PATO:0000844 + obsolete auditory acuity + true + + + + + + + + + quality + PATO:0000845 + obsolete auditory ability + true + + + + + + + + + quality + PATO:0000846 + obsolete auditory threshold + true + + + + + + + + + quality + PATO:0000847 + obsolete absolute auditory acuity + true + + + + + + + + + quality + PATO:0000848 + obsolete relative auditory acuity + true + + + + + + + + + quality + PATO:0000849 + obsolete absolute auditory ability + true + + + + + + + + + quality + PATO:0000850 + obsolete relative auditory ability + true + + + + + + + + + quality + PATO:0000851 + obsolete absolute auditory threshold + true + + + + + + + + + quality + PATO:0000852 + obsolete relative auditory threshold + true + + + + + + + + + quality + PATO:0000853 + obsolete blinking reflex value + true + + + + + + + + + quality + PATO:0000854 + obsolete contact righting reflex value + true + + + + + + + + + quality + PATO:0000855 + obsolete corneal reflex value + true + + + + + + + + + quality + PATO:0000856 + obsolete flinch reflex value + true + + + + + + + + + quality + PATO:0000857 + obsolete lordosis reflex value + true + + + + + + + + + quality + PATO:0000858 + obsolete ocular reflex value + true + + + + + + + + + quality + PATO:0000859 + obsolete pinna reflex value + true + + + + + + + + + quality + PATO:0000860 + obsolete postural reflex value + true + + + + + + + + + quality + PATO:0000861 + obsolete proboscis extension reflex value + true + + + + + + + + + quality + PATO:0000862 + obsolete pupillary reflex value + true + + + + + + + + + quality + PATO:0000863 + obsolete righting reflex value + true + + + + + + + + + quality + PATO:0000864 + obsolete spinal reflex value + true + + + + + + + + + quality + PATO:0000865 + obsolete startle reflex value + true + + + + + + + + + quality + PATO:0000866 + obsolete suckling reflex value + true + + + + + + + + + quality + PATO:0000867 + obsolete swallowing reflex value + true + + + + + + + + + quality + PATO:0000868 + obsolete vibrissae reflex value + true + + + + + + + + + quality + PATO:0000869 + obsolete prepulse inhibition value + true + + + + + + + + + quality + PATO:0000870 + obsolete relative neurobehavioral function value + true + + + + + + + + + quality + PATO:0000871 + obsolete aggressive + true + + + + + + + + + quality + PATO:0000872 + obsolete anxious + true + + + + + + + + + quality + PATO:0000873 + obsolete cataleptic + true + + + + + + + + + quality + PATO:0000874 + obsolete fearful + true + + + + + + + + + quality + PATO:0000875 + obsolete irritable + true + + + + + + + + + quality + PATO:0000876 + obsolete respiratory rate value + true + + + + + + + + + quality + PATO:0000877 + obsolete absolute respiratory rate value + true + + + + + + + + + quality + PATO:0000878 + obsolete relative respiratory rate value + true + + + + + + + + + quality + PATO:0000879 + obsolete fecundity value + true + + + + + + + + + quality + PATO:0000880 + obsolete fertility value + true + + + + + + + + + quality + PATO:0000881 + obsolete gestational period value + true + + + + + + + + + quality + PATO:0000882 + obsolete litter size value + true + + + + + + + + + quality + PATO:0000883 + obsolete female fertility value + true + + + + + + + + + quality + PATO:0000884 + obsolete hybrid fertility value + true + + + + + + + + + quality + PATO:0000885 + obsolete male fertility value + true + + + + + + + + + quality + PATO:0000886 + obsolete absolute litter size value + true + + + + + + + + + quality + PATO:0000887 + obsolete relative litter size value + true + + + + + + + + + + A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction. + + quality + PATO:0000888 + + + female fertile + + + + + A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction. + PATOC:GVG + + + + + + + + + quality + PATO:0000889 + obsolete cytoplasmic male sterility value + true + + + + + + + + + + A male fertility quality inhering in a male by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + + quality + male infertile + PATO:0000890 + + + male sterile + + + + + A male fertility quality inhering in a male by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + PATOC:GVG + + + + + + + + + A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. + + quality + PATO:0000891 + + + male fertile + + + + + A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. + PATOC:GVG + + + + + + + + + A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + + quality + female infertile + PATO:0000892 + + + female sterile + + + + + A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + PATOC:GVG + + + + + + + + + quality + PATO:0000893 + obsolete backcross fertility value + true + + + + + + + + + quality + PATO:0000894 + obsolete cytoplasmic sterility value + true + + + + + + + + + quality + PATO:0000895 + obsolete f1 fertility value + true + + + + + + + + + quality + PATO:0000896 + obsolete f2 fertility value + true + + + + + + + + + quality + PATO:0000897 + obsolete germ line dependent fertility value + true + + + + + + + + + quality + PATO:0000898 + obsolete intercross fertility value + true + + + + + + + + + quality + PATO:0000899 + obsolete soma dependent fertility value + true + + + + + + + + + quality + PATO:0000900 + obsolete backcross fertile + true + + + + + + + + + quality + backcross infertile + PATO:0000901 + obsolete backcross sterile + true + + + + + + + + + quality + PATO:0000902 + obsolete chinsurah boro type value + true + + + + + + + + + quality + PATO:0000903 + obsolete cms-hl type value + true + + + + + + + + + quality + PATO:0000904 + obsolete wild abortive value + true + + + + + + + + + quality + PATO:0000905 + obsolete f1 fertile + true + + + + + + + + + quality + F1 infertile + PATO:0000906 + obsolete f1 sterile + true + + + + + + + + + quality + PATO:0000907 + obsolete f2 fertile + true + + + + + + + + + quality + F2 infertile + PATO:0000908 + obsolete f2 sterile + true + + + + + + + + + quality + PATO:0000909 + obsolete intercross fertile + true + + + + + + + + + quality + intercross infertile + PATO:0000910 + obsolete intercross sterile + true + + + + + + + + + + + + + + + + + + + + + A rate which is relatively low. + + slow rate + quality + PATO:0000911 + + + decreased rate + + + + + A rate which is relatively low. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A rate which is relatively high. + + fast rate + high rate + quality + PATO:0000912 + + + increased rate + + + + + A rate which is relatively high. + PATO:GVG + + + + + + + + + quality + PATO:0000913 + obsolete qualitative value + true + + + + + + + + + quality + PATO:0000914 + obsolete continuant + true + + + + + + + + + A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. + quality + PATO:0000915 + + + thickness + + + + + A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. + WordNet:WordNet + + + + + + + + + quality + PATO:0000916 + obsolete absolute thickness + true + + + + + + + + + quality + PATO:0000917 + obsolete relative thickness + true + + + + + + + + + A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. + quality + PATO:0000918 + + + + volume + + + + + A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. + PATOC:GVG + + + + + + + + + quality + PATO:0000919 + obsolete absolute volume + true + + + + + + + + + quality + PATO:0000920 + obsolete relative volume + true + + + + + + + + + A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. + quality + breadth + PATO:0000921 + + + width + + + + + A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. + PATOC:GVG + + + + + + + + + quality + PATO:0000922 + obsolete absolute width + true + + + + + + + + + quality + PATO:0000923 + obsolete relative width + true + + + + + + + + + quality + PATO:0000924 + obsolete relative enzyme function + true + + + + + + + + + quality + PATO:0000925 + obsolete absolute enzyme function + true + + + + + + + + + quality + PATO:0000926 + obsolete intercross fertility + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to being sensitivity to the action of radiant energy. + quality + PATO:0000927 + + + + photosensitivity + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to being sensitivity to the action of radiant energy. + WordNet:WordNet + + + + + + + + + quality + PATO:0000928 + obsolete absolute photosensitivity + true + + + + + + + + + quality + PATO:0000929 + obsolete light intensivity sensitivity + true + + + + + + + + + quality + PATO:0000930 + obsolete light_quality sensitivity + true + + + + + + + + + quality + PATO:0000931 + obsolete blue light sensitivity + true + + + + + + + + + quality + PATO:0000932 + obsolete far red light sensitivity + true + + + + + + + + + quality + PATO:0000933 + obsolete red light sensitivity + true + + + + + + + + + quality + PATO:0000934 + obsolete u v light sensitivity + true + + + + + + + + + quality + PATO:0000935 + obsolete relative photosensitivity + true + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly by having or as if having an end or point cut off. + truncate + quality + PATO:0000936 + + truncated + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly by having or as if having an end or point cut off. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking organisation. + + quality + PATO:0000937 + + + disorganized + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking organisation. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation. + + quality + PATO:0000938 + + + organized + + + + + A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation. + PATOC:GVG + + + + + + + + + quality + PATO:0000939 + + obsolete regular shape + true + + + + + + + + + quality + PATO:0000940 + + obsolete irregular shape + true + + + + + + + + + A structural quality inhering in a cytoplasm that contains fluid filled cavities. + quality + PATO:0000941 + + + + vacuolated + + + + + A structural quality inhering in a cytoplasm that contains fluid filled cavities. + PATOC:mh + + + + + + + + + + + true + + + + + + + + + + + true + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a sharp or tapered end or point. + apiculate + quality + PATO:0000944 + + + sharpness + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a sharp or tapered end or point. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's exhibiting a downward bending of its leaves or other plant parts. + quality + PATO:0000945 + + epinastic + + + + + A shape quality inhering in a bearer by virtue of the bearer's exhibiting a downward bending of its leaves or other plant parts. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a somewhat elongated form with approximately parallel sides. + quality + PATO:0000946 + + + + oblong + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a somewhat elongated form with approximately parallel sides. + PATOC:GVG + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section. + ellipse-shaped + ellipsoid + elliptical + quality + oval + ovoid + PATO:0000947 + + + + elliptic + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section. + PATOC:GVG + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having a sinus or rounded lobe at the base. + cordate + cordiform + quality + PATO:0000948 + + + Having the shape of heart. + heart shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having a sinus or rounded lobe at the base. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being abnormally flattened or coalesced. + quality + PATO:0000949 + + + + fasciated + + + + + A shape quality inhering in a bearer by virtue of the bearer's being abnormally flattened or coalesced. + PATOC:GVG + + + + + + + + + A color between white and black colors. + quality + plumbeous + PATO:0000950 + + + grey + + + + + A color between white and black colors. + http://en.wikipedia.org/wiki/Grey + + + + + + + + + A color that falls about midway between red and blue in hue. + quality + PATO:0000951 + + + purple + + + + + A color that falls about midway between red and blue in hue. + Dictionary:http://dictionary.reference.com/ + + + + + + + + + A color consisting of dark orange, red, of very low intensity. + quality + PATO:0000952 + + + brown + + + + + A color consisting of dark orange, red, of very low intensity. + Wikipedia:http://en.wikipedia.org/wiki/Brown + + + + + + + + + A color hue with high-medium wavelength that of that portion of the visible spectrum lying between red and yellow, evoked in the human observer by radiant energy with wavelengths of approximately 585 to 620 nanometers. + quality + PATO:0000953 + + + orange + + + + + A color hue with high-medium wavelength that of that portion of the visible spectrum lying between red and yellow, evoked in the human observer by radiant energy with wavelengths of approximately 585 to 620 nanometers. + Wikipedia:http://en.wikipedia.org/wiki/Orange + + + + + + + + + Red color having medium to high brightness and low to moderate saturation. + quality + PATO:0000954 + + + pink + + + + + Red color having medium to high brightness and low to moderate saturation. + PATOC:MAH + + + + + + + + + + A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. + + quality + PATO:0000955 + + + fertile + + + + + A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. + PATOC:GVG + + + + + + + + + A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + + quality + PATO:0000956 + + + sterile + + + + + A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + PATOC:GVG + + + + + + + + + An optical quality which obtains by virtue of the ability of the bearer to absorb visible light. + quality + PATO:0000957 + + opacity + + + + + An optical quality which obtains by virtue of the ability of the bearer to absorb visible light. + PATOC:GVG + + + + + + + + + quality + PATO:0000958 + obsolete opacity value + true + + + + + + + + + quality + PATO:0000959 + obsolete relative opacity + true + + + + + + + + + quality + PATO:0000960 + obsolete absolute opacity + true + + + + + + + + + quality + PATO:0000961 + obsolete relative opacity value + true + + + + + + + + + quality + PATO:0000962 + obsolete absolute opacity value + true + + + + + + + + + A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy. + + non-transparent + quality + clouding + cloudy + PATO:0000963 + + + opaque + + + + + A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy. + PATOC:GVG + + + + + + + + + A optical quality inhering in a bearer by virtue of the bearer's lacking opacity. + + clear + hyaline + quality + PATO:0000964 + + + transparent + + + + + A optical quality inhering in a bearer by virtue of the bearer's lacking opacity. + PATOC:GVG + + + + + + + + + A pattern quality of inhering in a bearer by virtue of the correspondence in size, shape, and relative position of the bearer's parts on opposite sides of a dividing line or median plane or about a center or axis. + quality + PATO:0000965 + + symmetry + + + + + A pattern quality of inhering in a bearer by virtue of the correspondence in size, shape, and relative position of the bearer's parts on opposite sides of a dividing line or median plane or about a center or axis. + PATOC:GVG + + + + + + + + + quality + PATO:0000966 + obsolete symmetry value + true + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a sinuate margin and rippled surface. + PATO:0001610 + PATO:0001939 + undulated + undulating + waved + wavy + quality + rippled + sinuate + PATO:0000967 + + + + undulate + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a sinuate margin and rippled surface. + PATOC:GVG + + + + + + + + + quality + PATO:0000968 + obsolete albino value + true + + + + + + + + + A size quality inhering in a bearer by virtue of the bearer's being abnormally small. + dwarfed + quality + PATO:0000969 + + dwarf-like + + + + + A size quality inhering in a bearer by virtue of the bearer's being abnormally small. + Answers.com:Answers.com + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + quality + PATO:0000970 + + + + permeability + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + Biology-online:Biology-online + + + + + + + + + quality + PATO:0000971 + obsolete absolute permeability + true + + + + + + + + + quality + PATO:0000972 + obsolete relative permeability + true + + + + + + + + + A permeability quality inhering in a bearer by virtue of the bearer's disposition to admit the passage of gas or liquid through pores or interstices. + quality + PATO:0000973 + + + + porosity + + + + + A permeability quality inhering in a bearer by virtue of the bearer's disposition to admit the passage of gas or liquid through pores or interstices. + PATOC:GVG + + + + + + + + + quality + PATO:0000974 + obsolete relative porosity + true + + + + + + + + + quality + PATO:0000975 + obsolete absolute porosity + true + + + + + + + + + quality + PATO:0000976 + obsolete permeability value + true + + + + + + + + + quality + PATO:0000977 + obsolete absolute permeability value + true + + + + + + + + + quality + PATO:0000978 + obsolete relative permeability value + true + + + + + + + + + quality + PATO:0000979 + obsolete porosity value + true + + + + + + + + + quality + PATO:0000980 + obsolete absolute porosity value + true + + + + + + + + + quality + PATO:0000981 + obsolete relative porosity value + true + + + + + + + + + + A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + + quality + porous + PATO:0000982 + + + permeable + + + + + A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + Biology-online:Biology-online + + + + + + + + + A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + + quality + PATO:0000983 + + + impermeable + + + + + A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + Biology-online:Biology-online + + + + + + + + + + A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices. + + quality + PATO:0000984 + + + porous + + + + + A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices. + PATOC:GVG + + + + + + + + + A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices. + + quality + PATO:0000985 + + + non-porous + + + + + A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices. + PATOC:GVG + + + + + + + + + quality + PATO:0000986 + obsolete absolute consistency + true + + + + + + + + + quality + PATO:0000987 + obsolete relative consistency + true + + + + + + + + + quality + PATO:0000988 + obsolete relative consistency value + true + + + + + + + + + quality + PATO:0000989 + obsolete absolute consistency value + true + + + + + + + + + quality + PATO:0000990 + obsolete consistent + true + + + + + + + + + quality + PATO:0000991 + obsolete inconsistent + true + + + + + + + + + A physical quality of a liquid inhering in a bearer by virtue of the bearer's disposition to internal resistance to flow. + quality + PATO:0000992 + + + viscosity + + + + + A physical quality of a liquid inhering in a bearer by virtue of the bearer's disposition to internal resistance to flow. + PATOC:GVG + + + + + + + + + quality + PATO:0000993 + obsolete relative viscosity + true + + + + + + + + + quality + PATO:0000994 + obsolete absolute viscosity + true + + + + + + + + + quality + PATO:0000995 + obsolete viscosity value + true + + + + + + + + + quality + PATO:0000996 + obsolete absolute viscosity value + true + + + + + + + + + quality + PATO:0000997 + obsolete relative viscosity value + true + + + + + + + + + A viscosity quality inhering in a bearer by virtue of the bearer's having viscosity. + quality + PATO:0000998 + + + + viscous + + + + + A viscosity quality inhering in a bearer by virtue of the bearer's having viscosity. + PATOC:GVG + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's successive change from one thing or state to another and back again. + quality + PATO:0000999 + + alternation + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's successive change from one thing or state to another and back again. + WordNet:WordNet + + + + + + + + + quality + PATO:0001000 + obsolete relative alternation + true + + + + + + + + + quality + PATO:0001001 + obsolete absolute alternation + true + + + + + + + + + quality + PATO:0001002 + obsolete alternation value + true + + + + + + + + + quality + PATO:0001003 + obsolete relative alternation value + true + + + + + + + + + quality + PATO:0001004 + obsolete absolute alternation value + true + + + + + + + + + A time quality inhering in a bearer by virtue of the time it elapses for the bearer to respond to a stimulus. + quality + PATO:0001005 + + This class is a candidate for obsoletion. The definition is not clear, and the placement under "delayed" is not consistent with the definition. + latency + + + + + A time quality inhering in a bearer by virtue of the time it elapses for the bearer to respond to a stimulus. + PATOC:GVG + + + + + + + + + quality + PATO:0001006 + obsolete absolute latency + true + + + + + + + + + quality + PATO:0001007 + obsolete relative latency + true + + + + + + + + + quality + PATO:0001008 + obsolete absolute latency value + true + + + + + + + + + quality + PATO:0001009 + obsolete relative latency value + true + + + + + + + + + quality + PATO:0001010 + obsolete relative intensity + true + + + + + + + + + quality + PATO:0001011 + obsolete absolute intensity + true + + + + + + + + + quality + PATO:0001012 + obsolete relative intensity value + true + + + + + + + + + quality + PATO:0001013 + obsolete absolute intensity value + true + + + + + + + + + quality + PATO:0001014 + obsolete absolute occurence + true + + + + + + + + + quality + PATO:0001015 + obsolete relative occurence + true + + + + + + + + + quality + PATO:0001016 + obsolete absolute occurence value + true + + + + + + + + + quality + PATO:0001017 + obsolete relative occurence value + true + + + + + + + + + A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. + PATO:0002079 + Wikipedia:Physical_property + relational physical quality + quality + PATO:0001018 + + physical quality + + + + + A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. + PATOC:GVG + + + + + + + + + A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size. + quality + density + PATO:0001019 + + + mass density + + + + + A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size. + WordNet:WordNet + + + + + + + + + A structural quality inhering in a bearer by virtue of whether the bearer has been harmed or injured or spoiled. + quality + PATO:0001020 + + damage + + + + + A structural quality inhering in a bearer by virtue of whether the bearer has been harmed or injured or spoiled. + WordNet:WordNet + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's capacity to do work. + quality + PATO:0001021 + + + energy + + + + + A physical quality inhering in a bearer by virtue of the bearer's capacity to do work. + Wikipedia:http://en.wikipedia.org/wiki/Energy + + + + + + + + + A physical quality inhering in a bearer by virtue of the amount of momentum caused a certain force will produce over time. + quality + PATO:0001022 + + + impulse + + + + + A physical quality inhering in a bearer by virtue of the amount of momentum caused a certain force will produce over time. + url:http://www.wikipremed.com/home_resources/010104_momentum_concepts.pdf + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's velocity multiplied by its mass. + quality + PATO:0001023 + + + momentum + + + + + A physical quality inhering in a bearer by virtue of the bearer's velocity multiplied by its mass. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's rate of doing work. + quality + PATO:0001024 + + power + + + + + A physical quality inhering in a bearer by virtue of the bearer's rate of doing work. + Wikipedia:http://en.wikipedia.org/wiki/Power + + + + + + + + + A physical quality that inheres in a bearer by virtue of the bearer's amount of force per unit area it exerts. + quality + PATO:0001025 + + pressure + + + + + A physical quality that inheres in a bearer by virtue of the bearer's amount of force per unit area it exerts. + PATOC:GVG + + + + + + + + + A physical quality which is equal to the energy transferred by a force to a moving object. + W + quality + PATO:0001026 + + work + + + + + A physical quality which is equal to the energy transferred by a force to a moving object. + Wikipedia:http://en.wikipedia.org/wiki/Work + + + + + + + + + quality + PATO:0001027 + obsolete physical quantity + true + + + + + + + + + A physical quality inhering in a bearer by virtue of the rate of change of the bearer's velocity in either speed or direction. + quality + PATO:0001028 + + + acceleration + + + + + A physical quality inhering in a bearer by virtue of the rate of change of the bearer's velocity in either speed or direction. + Wikipedia:http://en.wikipedia.org/wiki/Acceleration + + + + + + + + + A physical quality inhering in a bearer by virtue of ratio of the bearer's output to the bearer's input. + quality + PATO:0001029 + + efficiency + + + + + A physical quality inhering in a bearer by virtue of ratio of the bearer's output to the bearer's input. + WordNet:WordNet + + + + + + + + + A physical quality that exists by virtue of the rate of flow of the bearer across a given surface. + quality + PATO:0001030 + + + flux + + + + + A physical quality that exists by virtue of the rate of flow of the bearer across a given surface. + WordNet:WordNet + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to recover its size and shape after deformation in any way. + quality + PATO:0001031 + + + + elasticity + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to recover its size and shape after deformation in any way. + merriam-webster:merriam-webster + + + + + + + + + + + true + + + + + + + + + quality + PATO:0001033 + obsolete stiffness + true + + + + + + + + + A physical quality inhering in a bearer by virtue of the relative change in the bearer's length or the bearer's volume when being stretched or squashed. + quality + PATO:0001034 + + strain + + + + + A physical quality inhering in a bearer by virtue of the relative change in the bearer's length or the bearer's volume when being stretched or squashed. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum. + force amplitude + quality + PATO:0001035 + + + force + + + + + A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum. + thesaurus.maths:thesaurus.maths + + + + + + + + + quality + PATO:0001036 + obsolete relative life span + true + + + + + + + + + quality + PATO:0001037 + obsolete absolute life span + true + + + + + + + + + quality + PATO:0001038 + obsolete ratio + true + + + + + + + + + quality + PATO:0001039 + obsolete absolute ratio + true + + + + + + + + + quality + PATO:0001040 + obsolete relative ratio + true + + + + + + + + + quality + PATO:0001041 + obsolete relative amplitude + true + + + + + + + + + quality + PATO:0001042 + obsolete absolute amplitude + true + + + + + + + + + A quality inhering in an entity by virtue of the bearer's propensity to resist an external stimulus. + + susceptibility + quality + PATO:0001043 + + + + susceptibility toward + + + + + A quality inhering in an entity by virtue of the bearer's propensity to resist an external stimulus. + PATOC:GVG + + + + + + + + + quality + PATO:0001044 + obsolete absolute power + true + + + + + + + + + quality + PATO:0001045 + obsolete relative power + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus. + + resistance + quality + PATO:0001046 + + + + + resistance to + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus. + PATOC:GVG + + + + + + + + + quality + PATO:0001047 + obsolete absolute resistance + true + + + + + + + + + quality + PATO:0001048 + obsolete relative resistance + true + + + + + + + + + quality + PATO:0001049 + obsolete absolute susceptibility + true + + + + + + + + + quality + PATO:0001050 + obsolete relative susceptibility + true + + + + + + + + + An angle which is less than 90 degrees. + quality + PATO:0001051 + + + acute angle to + + + + + An angle which is less than 90 degrees. + thesaurus.maths:thesaurus.maths + + + + + + + + + An angle which is between 90 degrees and 180 degrees to another entity. + quality + PATO:0001052 + + + obtuse angle to + + + + + An angle which is between 90 degrees and 180 degrees to another entity. + thesaurus.maths:thesaurus.maths + + + + + + + + + An angle which is less than 180 degrees to another entity. + quality + PATO:0001053 + + + convex angle to + + + + + An angle which is less than 180 degrees to another entity. + maths.org:maths.org + + + + + + + + + A convex angle that is inside two adjacent sides of a polygon. + quality + PATO:0001054 + + + internal angle + + + + + A convex angle that is inside two adjacent sides of a polygon. + PATOC:GVG + + + + + + + + + An angular placement quality inhering in a bearer by virtue of the bearer's placement at an angle that is greater than 180 degrees but less than 360 degrees to another entity. + quality + PATO:0001055 + + + reflex angle to + + + + + An angular placement quality inhering in a bearer by virtue of the bearer's placement at an angle that is greater than 180 degrees but less than 360 degrees to another entity. + thesaurus.maths:thesaurus.maths + + + + + + + + + quality + PATO:0001056 + obsolete number + true + + + + + + + + + quality + PATO:0001057 + obsolete relative acceleration + true + + + + + + + + + quality + PATO:0001058 + obsolete absolute acceleration + true + + + + + + + + + quality + PATO:0001059 + obsolete relative efficiency + true + + + + + + + + + quality + PATO:0001060 + obsolete absolute efficiency + true + + + + + + + + + quality + PATO:0001061 + obsolete relative elasticity + true + + + + + + + + + quality + PATO:0001062 + obsolete absolute elasticity + true + + + + + + + + + quality + PATO:0001063 + obsolete relative flux + true + + + + + + + + + quality + PATO:0001064 + obsolete absolute flux + true + + + + + + + + + quality + PATO:0001065 + obsolete relative stiffness + true + + + + + + + + + quality + PATO:0001066 + obsolete absolute stiffness + true + + + + + + + + + quality + PATO:0001067 + obsolete absolute strain + true + + + + + + + + + quality + PATO:0001068 + obsolete relative strain + true + + + + + + + + + quality + PATO:0001069 + obsolete relative density + true + + + + + + + + + quality + PATO:0001070 + obsolete absolute density + true + + + + + + + + + quality + PATO:0001071 + obsolete relative energy + true + + + + + + + + + quality + PATO:0001072 + obsolete absolute energy + true + + + + + + + + + quality + PATO:0001073 + obsolete relative impulse + true + + + + + + + + + quality + PATO:0001074 + obsolete absolute impulse + true + + + + + + + + + quality + PATO:0001075 + obsolete absolute momentum + true + + + + + + + + + quality + PATO:0001076 + obsolete relative momentum + true + + + + + + + + + quality + PATO:0001077 + obsolete absolute pressure + true + + + + + + + + + quality + PATO:0001078 + obsolete relative pressure + true + + + + + + + + + quality + PATO:0001079 + obsolete absolute work + true + + + + + + + + + quality + PATO:0001080 + obsolete relative work + true + + + + + + + + + quality + PATO:0001081 + obsolete physical measure value + true + + + + + + + + + quality + PATO:0001082 + obsolete damage value + true + + + + + + + + + quality + PATO:0001083 + obsolete acceleration value + true + + + + + + + + + quality + PATO:0001084 + obsolete relative acceleration value + true + + + + + + + + + quality + PATO:0001085 + obsolete absolute acceleration value + true + + + + + + + + + quality + PATO:0001086 + obsolete efficiency value + true + + + + + + + + + quality + PATO:0001087 + obsolete relative efficiency value + true + + + + + + + + + quality + PATO:0001088 + obsolete absolute efficiency value + true + + + + + + + + + quality + PATO:0001089 + obsolete elasticity value + true + + + + + + + + + quality + PATO:0001090 + obsolete absolute elasticity value + true + + + + + + + + + quality + PATO:0001091 + obsolete relative elasticity value + true + + + + + + + + + quality + PATO:0001092 + obsolete flux value + true + + + + + + + + + quality + PATO:0001093 + obsolete relative flux value + true + + + + + + + + + quality + PATO:0001094 + obsolete absolute flux value + true + + + + + + + + + quality + PATO:0001095 + obsolete force value + true + + + + + + + + + quality + PATO:0001096 + obsolete absolute force value + true + + + + + + + + + quality + PATO:0001097 + obsolete relative force value + true + + + + + + + + + quality + PATO:0001098 + obsolete absolute force + true + + + + + + + + + quality + PATO:0001099 + obsolete relative force + true + + + + + + + + + quality + PATO:0001100 + obsolete position value + true + + + + + + + + + quality + PATO:0001101 + obsolete stiffness value + true + + + + + + + + + quality + PATO:0001102 + obsolete absolute stiffness value + true + + + + + + + + + quality + PATO:0001103 + obsolete relative stiffness value + true + + + + + + + + + quality + PATO:0001104 + obsolete strain value + true + + + + + + + + + quality + PATO:0001105 + obsolete absolute strain value + true + + + + + + + + + quality + PATO:0001106 + obsolete relative strain value + true + + + + + + + + + quality + PATO:0001107 + obsolete density value + true + + + + + + + + + quality + PATO:0001108 + obsolete relative amplitude value + true + + + + + + + + + quality + PATO:0001109 + obsolete absolute amplitude value + true + + + + + + + + + quality + PATO:0001110 + obsolete absolute density value + true + + + + + + + + + quality + PATO:0001111 + obsolete relative density value + true + + + + + + + + + quality + PATO:0001112 + obsolete energy value + true + + + + + + + + + quality + PATO:0001113 + obsolete absolute energy value + true + + + + + + + + + quality + PATO:0001114 + obsolete relative energy value + true + + + + + + + + + quality + PATO:0001115 + obsolete impulse value + true + + + + + + + + + quality + PATO:0001116 + obsolete relative impulse value + true + + + + + + + + + quality + PATO:0001117 + obsolete absolute impulse value + true + + + + + + + + + quality + PATO:0001118 + obsolete momentum value + true + + + + + + + + + quality + PATO:0001119 + obsolete absolute momentum value + true + + + + + + + + + quality + PATO:0001120 + obsolete relative momentum value + true + + + + + + + + + quality + PATO:0001121 + obsolete power value + true + + + + + + + + + quality + PATO:0001122 + obsolete absolute power value + true + + + + + + + + + quality + PATO:0001123 + obsolete relative power value + true + + + + + + + + + quality + PATO:0001124 + obsolete pressure value + true + + + + + + + + + quality + PATO:0001125 + obsolete absolute pressure value + true + + + + + + + + + quality + PATO:0001126 + obsolete relative pressure value + true + + + + + + + + + quality + PATO:0001127 + obsolete work value + true + + + + + + + + + quality + PATO:0001128 + obsolete absolute work value + true + + + + + + + + + quality + PATO:0001129 + obsolete relative work value + true + + + + + + + + + quality + PATO:0001130 + obsolete ratio value + true + + + + + + + + + quality + PATO:0001131 + obsolete absolute ratio value + true + + + + + + + + + quality + PATO:0001132 + obsolete relative ratio value + true + + + + + + + + + quality + PATO:0001133 + obsolete immunoglobulin concentration + true + + + + + + + + + quality + PATO:0001134 + obsolete ig a concentration + true + + + + + + + + + quality + PATO:0001135 + obsolete ig d concentration + true + + + + + + + + + quality + PATO:0001136 + obsolete ig e concentration + true + + + + + + + + + quality + PATO:0001137 + obsolete ig g concentration + true + + + + + + + + + quality + PATO:0001138 + obsolete ig m concentration + true + + + + + + + + + quality + PATO:0001139 + obsolete urine glucose composition + true + + + + + + + + + quality + PATO:0001140 + obsolete immunoglobulin concentration value + true + + + + + + + + + quality + PATO:0001141 + obsolete ig a concentration value + true + + + + + + + + + quality + PATO:0001142 + obsolete ig d concentration value + true + + + + + + + + + quality + PATO:0001143 + obsolete ig e concentration value + true + + + + + + + + + quality + PATO:0001144 + obsolete ig g concentration value + true + + + + + + + + + quality + PATO:0001145 + obsolete ig m concentration value + true + + + + + + + + + quality + PATO:0001146 + obsolete resistance value + true + + + + + + + + + quality + PATO:0001147 + obsolete absolute resistance value + true + + + + + + + + + quality + PATO:0001148 + obsolete relative resistance value + true + + + + + + + + + quality + PATO:0001149 + obsolete susceptibility value + true + + + + + + + + + quality + PATO:0001150 + obsolete absolute susceptibility value + true + + + + + + + + + quality + PATO:0001151 + obsolete relative susceptibility value + true + + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus. + + susceptible + quality + PATO:0001152 + + + + susceptible toward + + + + + A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus. + + insusceptible + quality + PATO:0001153 + + + + insusceptible toward + + + + + A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus. + PATO:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width. + + quality + PATO:0001154 + + elongated + + + + + A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width. + WordNet:WordNet + + + + + + + + + quality + PATO:0001155 + obsolete absolute concentration + true + + + + + + + + + quality + PATO:0001156 + obsolete relative concentration + true + + + + + + + + + quality + PATO:0001157 + obsolete absolute concentration value + true + + + + + + + + + quality + PATO:0001158 + obsolete relative concentration value + true + + + + + + + + + A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration. + quality + PATO:0001159 + + + concentrated + + + + + A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration. + PATOC:GVG + + + + + + + + + quality + PATO:0001160 + obsolete unconcentrated + true + + + + + + + + + A concentration which relatively low. + quality + PATO:0001161 + + + diluted + + + + + A concentration which relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A concentration which is higher relative to the normal or average. + + high concentration + quality + PATO:0001162 + + + increased concentration + + + + + A concentration which is higher relative to the normal or average. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A concentration which is lower relative to the normal or average. + + low concentration + quality + PATO:0001163 + + + decreased concentration + + + + + A concentration which is lower relative to the normal or average. + PATOC:GVG + + + + + + + + + A physical quality which inheres in a bearer by virtue of the bearer's exhibiting density. + quality + PATO:0001164 + + + dense + + + + + A physical quality which inheres in a bearer by virtue of the bearer's exhibiting density. + PATOC:GVG + + + + + + + + + quality + PATO:0001165 + obsolete urine enzyme composition value + true + + + + + + + + + quality + PATO:0001166 + obsolete urine enzyme composition + true + + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired. + + quality + PATO:0001167 + + damaged + + + + + A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired. + WordNet:WordNet + + + + + + + + + A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled. + + quality + PATO:0001168 + + undamaged + + + + + A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled. + WordNet:WordNet + + + + + + + + + + + true + + + + + + + + + quality + PATO:0001170 + obsolete numerical value + true + + + + + + + + + + An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way. + + quality + PATO:0001171 + + + + elastic + + + + + An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way. + merriam-webster:merriam-webster + + + + + + + + + An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way. + + quality + PATO:0001172 + + + + inelastic + + + + + An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way. + merriam-webster:merriam-webster + + + + + + + + + quality + PATO:0001173 + obsolete urine glucose composition value + true + + + + + + + + + quality + PATO:0001174 + obsolete urine composition + true + + + + + + + + + quality + PATO:0001175 + obsolete urine composition + true + + + + + + + + + quality + PATO:0001176 + obsolete deaf + true + + + + + + + + + quality + PATO:0001177 + obsolete blind + true + + + + + + + + + A resistance quality inhering in a bearer by virtue of the bearer's resistance to a stimulus. + resistant + quality + PATO:0001178 + + + + resistant to + + + + + A resistance quality inhering in a bearer by virtue of the bearer's resistance to a stimulus. + PATOC:GVG + + + + + + + + + quality + PATO:0001179 + obsolete immune + true + + + + + + + + + quality + PATO:0001180 + obsolete relative response + true + + + + + + + + + quality + PATO:0001181 + obsolete absolute response + true + + + + + + + + + quality + PATO:0001182 + obsolete relative response + true + + + + + + + + + quality + PATO:0001183 + obsolete absolute response value + true + + + + + + + + + quality + PATO:0001184 + obsolete maturity value + true + + + + + + + + + A maturity quality inhering in a bearer by virtue of the bearer's indirect development, undergoing metamorphosis. + quality + PATO:0001185 + + larval + + + + + A maturity quality inhering in a bearer by virtue of the bearer's indirect development, undergoing metamorphosis. + Wikipedia:http://en.wikipedia.org/wiki/Larval + + + + + + + + + A maturity quality inhering in a bearer by virtue of the bearer's being at the age immediately before puberty. + quality + PATO:0001186 + + prepubescent + + + + + A maturity quality inhering in a bearer by virtue of the bearer's being at the age immediately before puberty. + WordNet:WordNet + + + + + + + + + A maturity quality inhering in a insect by virtue of the bearer's being in the chrysalis (cocoon) or post larval stage. + quality + PATO:0001187 + + pupal + + + + + A maturity quality inhering in a insect by virtue of the bearer's being in the chrysalis (cocoon) or post larval stage. + WordNet:WordNet + + + + + + + + + A maturity quality inhering in a bearer by virtue of the bearer's being in an inactive stage in the development of some insects, between the larval and the pupal stages. + quality + PATO:0001188 + + prepupal + + + + + A maturity quality inhering in a bearer by virtue of the bearer's being in an inactive stage in the development of some insects, between the larval and the pupal stages. + WordNet:WordNet + + + + + + + + + A maturity quality inhering in a bearer by virtue of the bearer's being between the onset of puberty and maturity. + quality + PATO:0001189 + + + adolescent + + + + + A maturity quality inhering in a bearer by virtue of the bearer's being between the onset of puberty and maturity. + WordNet:WordNet + + + + + + + + + A maturity quality inhering in a bearer by virtue the bearer's being not fully grown or developed. + quality + PATO:0001190 + + + juvenile + + + + + A maturity quality inhering in a bearer by virtue the bearer's being not fully grown or developed. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the middle relative to another entity. + quality + PATO:0001191 + + + + medial to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the middle relative to another entity. + PATOC:nw + + + + + + + + + + + + + + + + + + + + + A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent. + + hyperresponsive + increased responsivity + quality + PATO:0001192 + + + + hyperresponsive to + + + + + A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the side relative to another entity. + lateral + quality + PATO:0001193 + + + + lateral to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the side relative to another entity. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent. + + decreased responsivity + hyporesponsive + quality + PATO:0001194 + + + + hyporesponsive to + + + + + A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located more centrally than another entity. + quality + PATO:0001195 + + + + proximal to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located more centrally than another entity. + PATOC:nw + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the abdomen of an organism relative to another entity. + anterior_ to + quality + PATO:0001196 + + + + ventral to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the abdomen of an organism relative to another entity. + PATOC:nw + + + + + + + + + quality + PATO:0001197 + obsolete modified direction + true + + + + + + + + + quality + PATO:0001198 + obsolete unmodified direction + true + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being narrow, with the two opposite margins parallel. + quality + PATO:0001199 + + + + linear + + + + + A shape quality inhering in a bearer by virtue of the bearer's being narrow, with the two opposite margins parallel. + ISBN:0881923214 + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter T. + quality + PATO:0001200 + + + T-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter T. + WordNet:WordNet + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter Y. + quality + PATO:0001201 + + + Y-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter Y. + WordNet:WordNet + + + + + + + + + + + true + + + + + + + + + + + true + + + + + + + + + quality + PATO:0001204 + + obsolete not enlarged + true + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having toothlike projections in the margin. + dentate + toothed + quality + PATO:0001205 + + + + dentated + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having toothlike projections in the margin. + WordNet:WordNet + + + + + + + + + A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex. + + serrate + quality + PATO:0001206 + + + + serrated + + + + + A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex. + ISBN:0881923214 + + + + + + + + + quality + PATO:0001207 + obsolete absolute compatability + true + + + + + + + + + + An odor quality inhering in a bearer by virtue of the bearer's lacking odour. + quality + PATO:0001208 + + odorless + + + + + An odor quality inhering in a bearer by virtue of the bearer's lacking odour. + PATOC:GVG + + + + + + + + + quality + PATO:0001209 + obsolete absolute function + true + + + + + + + + + quality + PATO:0001210 + obsolete plane_angle_quantity + true + + + + + + + + + quality + PATO:0001211 + obsolete solid_angle_quantity + true + + + + + + + + + quality + PATO:0001212 + obsolete length_unit + true + + + + + + + + + quality + PATO:0001213 + obsolete mass_unit + true + + + + + + + + + quality + PATO:0001214 + obsolete temparature_unit + true + + + + + + + + + quality + PATO:0001215 + obsolete time_unit + true + + + + + + + + + quality + PATO:0001216 + obsolete volume_unit + true + + + + + + + + + quality + PATO:0001217 + obsolete energy_unit + true + + + + + + + + + quality + PATO:0001218 + obsolete substance_unit + true + + + + + + + + + quality + PATO:0001219 + obsolete area_unit + true + + + + + + + + + quality + PATO:0001220 + obsolete angle_unit + true + + + + + + + + + quality + PATO:0001221 + obsolete plane_angle_unit + true + + + + + + + + + quality + PATO:0001222 + obsolete solid_angle_unit + true + + + + + + + + + quality + PATO:0001223 + obsolete quantitative value + true + + + + + + + + + quality + PATO:0001224 + obsolete real number + true + + + + + + + + + quality + PATO:0001225 + obsolete relational number + true + + + + + + + + + + + true + + + + + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change. + + variable + quality + PATO:0001227 + + + variant + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change. + Dictionary:http://dictionary.reference.com/ + + + + + + + + + quality + PATO:0001228 + obsolete dull + true + + + + + + + + + A color saturation which is of high purity. + + bright + quality + vivid + PATO:0001229 + + high saturation + + + + + A color saturation which is of high purity. + PATOC:MAH + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's power or force. + quality + PATO:0001230 + + + strength + + + + + A quality inhering in a bearer by virtue of the bearer's power or force. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + quality + PATO:0001231 + obsolete cold insensitive + true + + + + + + + + + quality + PATO:0001232 + obsolete heat insentive + true + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the back or upper surface of an organism relative to another entity. + + dorsal + posterior_to (human torso) + superior_to (human head) + quality + PATO:0001233 + + + dorsal to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the back or upper surface of an organism relative to another entity. + PATOC:nw + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity. + + distal + quality + PATO:0001234 + + + + distal to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity. + PATOC:nw + + + + + + + + + quality + PATO:0001235 + obsolete strength value + true + + + + + + + + + + A quality which inheres in an process. + PATO:0001239 + PATO:0001240 + quality of a process + quality of occurrent + quality of process + relational quality of occurrent + quality + PATO:0001236 + See comments of relational quality of a physical entity. + process quality + + + + + A quality which inheres in an process. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + + + true + + + + + + + + + + + true + + + + + + + + + + + true + + + + + + + + + A quality which inheres in a continuant. + PATO:0001237 + PATO:0001238 + snap:Quality + monadic quality of a continuant + multiply inhering quality of a physical entity + quality of a continuant + quality of a single physical entity + quality of an object + quality of continuant + monadic quality of an object + monadic quality of continuant + quality + PATO:0001241 + Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles. + physical object quality + + + + + A quality which inheres in a continuant. + PATOC:GVG + + + + + + + + + A physical quality which is equal to the distance between repeating units of a wave pattern. + quality + PATO:0001242 + + + wavelength + + + + + A physical quality which is equal to the distance between repeating units of a wave pattern. + PATOC:GVG + + + + + + + + + A color consisting of blue hue and high brightness. + quality + PATO:0001243 + + + light blue + + + + + A color consisting of blue hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of blue hue and low brightness. + quality + PATO:0001244 + + + dark blue + + + + + A color consisting of blue hue and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of brown hue and low brightness. + quality + PATO:0001245 + + + dark brown + + + + + A color consisting of brown hue and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of brown hue and high brightness. + quality + PATO:0001246 + + + light brown + + + + + A color consisting of brown hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of cyan hue and high brightness. + quality + PATO:0001247 + + light cyan + + + + + A color consisting of cyan hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of cyan hue and low brightness. + quality + PATO:0001248 + + dark cyan + + + + + A color consisting of cyan hue and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of green hue and low brightness. + quality + PATO:0001249 + + + dark green + + + + + A color consisting of green hue and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of green hue and high brightness. + quality + PATO:0001250 + + + light green + + + + + A color consisting of green hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of grey color and low brightness. + quality + PATO:0001251 + + + dark grey + + + + + A color consisting of grey color and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of grey color and high brightness. + quality + PATO:0001252 + + + light grey + + + + + A color consisting of grey color and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of magenta color and high brightness. + quality + PATO:0001253 + + + light magenta + + + + + A color consisting of magenta color and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of magenta with low brightness. + quality + PATO:0001254 + + + dark magenta + + + + + A color consisting of magenta with low brightness. + PATOC:GVG + + + + + + + + + A color consisting of orange hue and high brightness. + quality + PATO:0001255 + + + light orange + + + + + A color consisting of orange hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of orange color and low brightness. + quality + PATO:0001256 + + + dark orange + + + + + A color consisting of orange color and low brightness. + PATOC:GVG + + + + + + + + + Pink color having high brightness and moderate saturation. + quality + PATO:0001257 + + + light deep pink + + + + + Pink color having high brightness and moderate saturation. + PATOC:GVG + + + + + + + + + Pink color having medium brightness and moderate saturation. + quality + PATO:0001258 + + + deep pink + + + + + Pink color having medium brightness and moderate saturation. + PATOC:MAH + + + + + + + + + A color consisting of purple color and low brightness. + quality + PATO:0001259 + + + dark purple + + + + + A color consisting of purple color and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of purple color and high brightness. + quality + PATO:0001260 + + + light purple + + + + + A color consisting of purple color and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of red hue and low brightness. + quality + PATO:0001261 + + + dark red + + + + + A color consisting of red hue and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of red hue and high brightness. + quality + PATO:0001262 + + + light red + + + + + A color consisting of red hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of yellow hue and low brightness. + quality + PATO:0001263 + + + dark yellow + + + + + A color consisting of yellow hue and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of yellow hue and high brightness. + quality + blond + PATO:0001264 + + + light yellow + + + + + A color consisting of yellow hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of blue hue and high saturation. + quality + bright blue + PATO:0001265 + + + saturated blue + + + + + A color consisting of blue hue and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of blue hue and low saturation. + pale blue + quality + PATO:0001266 + + desaturated blue + + + + + A color consisting of blue hue and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of brown hue and high saturation. + quality + bright brown + PATO:0001267 + + saturated brown + + + + + A color consisting of brown hue and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of brown hue and low saturation. + pale brown + quality + PATO:0001268 + + desaturated brown + + + + + A color consisting of brown hue and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of cyan colour and high saturation. + quality + bright cyan + PATO:0001269 + + saturated cyan + + + + + A color consisting of cyan colour and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of cyan colour and low saturation. + pale cyan + quality + PATO:0001270 + + desaturated cyan + + + + + A color consisting of cyan colour and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of green hue and high saturation. + quality + bright green + PATO:0001271 + + saturated green + + + + + A color consisting of green hue and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of green hue and low saturation. + pale green + quality + PATO:0001272 + + desaturated green + + + + + A color consisting of green hue and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of grey color and high saturation. + quality + PATO:0001273 + + obsolete bright grey + true + + + + + A color consisting of grey color and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of grey color and low saturation. + quality + PATO:0001274 + + obsolete pale grey + true + + + + + A color consisting of grey color and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of magenta color and high saturation. + quality + bright magenta + PATO:0001275 + + saturated magenta + + + + + A color consisting of magenta color and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of magenta color and low saturation. + pale magenta + quality + PATO:0001276 + + desaturated magenta + + + + + A color consisting of magenta color and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of orange hue and high saturation. + quality + bright orange + PATO:0001277 + + saturated orange + + + + + A color consisting of orange hue and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of orange hue and low saturation. + pale orange + quality + PATO:0001278 + + desaturated orange + + + + + A color consisting of orange hue and low saturation. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + Pink color having medium brightness and low saturation. + PATO:0001279 + quality + bright pink + PATO:0001280 + + + dark pale pink + + + + + Pink color having medium brightness and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of purple color and high saturation. + quality + bright purple + PATO:0001281 + + saturated purple + + + + + A color consisting of purple color and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of purple color and low saturation. + pale purple + quality + PATO:0001282 + + desaturated purple + + + + + A color consisting of purple color and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of red hue and high saturation. + quality + bright red + PATO:0001283 + + + saturated red + + + + + A color consisting of red hue and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of red hue and low saturation. + pale red + quality + PATO:0001284 + + desaturated red + + + + + A color consisting of red hue and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of yellow hue and high saturation. + quality + bright yellow + PATO:0001285 + + saturated yellow + + + + + A color consisting of yellow hue and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of yellow hue and low saturation. + pale yellow + quality + PATO:0001286 + + desaturated yellow + + + + + A color consisting of yellow hue and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of red and brown hue. + quality + PATO:0001287 + + + red brown + + + + + A color consisting of red and brown hue. + PATOC:GVG + + + + + + + + + A color consisting of red and brown hue and low brightness. + quality + PATO:0001288 + + + dark red brown + + + + + A color consisting of red and brown hue and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of red and brown hue and high brightness. + quality + PATO:0001289 + + + light red brown + + + + + A color consisting of red and brown hue and high brightness. + PATOC:GVG + + + + + + + + + A fluorescence quality inhering in a bearer by virtue of emitting light during exposure to radiation from an external source. + quality + PATO:0001290 + + fluorescent + + + + + A fluorescence quality inhering in a bearer by virtue of emitting light during exposure to radiation from an external source. + web:www.thefreedictionary.com/ + + + + + + + + + A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation. + quality + PATO:0001291 + + electromagnetic (EM) radiation quality + + + + + A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation. + Wikipedia:http://en.wikipedia.org/wiki/Electromagnetic_radiation + + + + + + + + + An EM radiation quality that is independent of the EM wavelength range. + quality + PATO:0001292 + + full-spectrum EM radiation quality + + + + + An EM radiation quality that is independent of the EM wavelength range. + PATOC:GVG + + + + + + + + + A scalar EM radiation quality which obtains by the capacity of the bearer to retain radiation. + quality + PATO:0001293 + + absorption quality + + + + + A scalar EM radiation quality which obtains by the capacity of the bearer to retain radiation. + PATOC:GVG + + + + + + + + + A scalar EM radiation quality which obtains by the capacity of the bearer to scatter or reflect radiation. + quality + PATO:0001294 + + radiation reflective quality + + + + + A scalar EM radiation quality which obtains by the capacity of the bearer to scatter or reflect radiation. + PATOC:GVG + + + + + + + + + A reflective quality restricted to a particular wavelength. + quality + PATO:0001295 + + Typically used for light, but also applied to full EM spectrum. + albedo + + + + + A reflective quality restricted to a particular wavelength. + PATOC:cjm + + + + + + + + + A scalar optical quality which obtains by the magnitude of the light emitted by the bearer. + quality + PATO:0001296 + + luminous flux + + + + + A scalar optical quality which obtains by the magnitude of the light emitted by the bearer. + PATOC:GVG + + + + + + + + + A radiation reflective quality inhering in a bearer by virtue of the ratio of the energy of a wave reflected from its surface to the energy possessed by the wave striking the bearer's surface. + quality + PATO:0001297 + + reflectivity + + + + + A radiation reflective quality inhering in a bearer by virtue of the ratio of the energy of a wave reflected from its surface to the energy possessed by the wave striking the bearer's surface. + PATOC:GVG + + + + + + + + + A fluorescence in which the emittence continues after the absorption has ceased. + quality + PATO:0001298 + + phosphorescence + + + + + A fluorescence in which the emittence continues after the absorption has ceased. + PATOC:GVG + + + + + + + + + A scalar EM radiation quality which obtains by the capacity of the bearer to emit radiation. + quality + PATO:0001299 + + radiation emitting quality + + + + + A scalar EM radiation quality which obtains by the capacity of the bearer to emit radiation. + PATOC:GVG + + + + + + + + + An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light. + quality + PATO:0001300 + + optical quality + + + + + An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light. + PATOC:GVG + + + + + + + + + An optical quality that is the mixture, purity or pattern of wavelengths of light perceived by the observer. + quality + PATO:0001301 + + chromatic property + + + + + An optical quality that is the mixture, purity or pattern of wavelengths of light perceived by the observer. + PATOC:MAH + + + + + + + + + A color consisting of red and orange hue with a slight amount of gray. + quality + PATO:0001302 + + + vermilion + + + + + A color consisting of red and orange hue with a slight amount of gray. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing. + quality + variability of a physical quality + PATO:0001303 + + variability + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing. + Dictionary:http://dictionary.reference.com/ + + + + + + + + + + + + + + + + + + + + + + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change. + quality + PATO:0001304 + + variability of temperature + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A temperature which is relatively high. + + PATO:0000678 + high temperature + hot + quality + PATO:0001305 + + increased temperature + + + + + A temperature which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A temperature which is relatively low. + + PATO:0000677 + cold + low temperature + quality + PATO:0001306 + + decreased temperature + + + + + A temperature which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A variability of temperature which is relatively low. + + low variability of temperature + quality + PATO:0001307 + + decreased variability of temperature + + + + + A variability of temperature which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A variability of temperature which is relatively high. + + high variability of temperature + quality + PATO:0001308 + + increased variability of temperature + + + + + A variability of temperature which is relatively high. + PATOC:GVG + + + + + + + + + A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point. + PATO:0000081 + period + quality + time + PATO:0001309 + + + duration + + + + + A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point. + PATOC:mellybelly + + + + + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's duration of exhibition of thermal energy. + quality + PATO:0001310 + + TODO: obsolete? I don't know what this means. + duration of temperature + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's duration of exhibition of thermal energy. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A duration of temperature which is lesser relative to the normal or average enduring or continuing in time. + + quality + PATO:0001311 + + decreased duration of temperature + + + + + A duration of temperature which is lesser relative to the normal or average enduring or continuing in time. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time. + + high duration of temperature + quality + PATO:0001312 + + increased duration of temperature + + + + + A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time. + PATOC:GVG + + + + + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature. + + quality + PATO:0001313 + + invariant temperature + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature. + PATO:GVG + + + + + + + + + A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature. + + quality + PATO:0001314 + + variant temperature + + + + + A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature. + PATO:GVG + + + + + + + + + A temperature which is increased by a low degree. + quality + PATO:0001315 + + mild increased temperature + + + + + A temperature which is increased by a low degree. + PATOC:GVG + + + + + + + + + A temperature which is increased by a medium degree. + quality + PATO:0001316 + + moderate increased temperature + + + + + A temperature which is increased by a medium degree. + PATOC:GVG + + + + + + + + + A temperature which is increased by a high degree. + quality + PATO:0001317 + + severe increased temperature + + + + + A temperature which is increased by a high degree. + PATOC:GVG + + + + + + + + + + A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli. + + quality + PATO:0001318 + + + + indiscriminate + + + + + A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli. + PATOC:GVG + + + + + + + + + A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli. + + quality + PATO:0001319 + + + + discriminate + + + + + A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli. + PATOC:GVG + + + + + + + + + A pilosity quality of being covered with short hairs or soft down. + quality + PATO:0001320 + + pubescent hair + + + + + A pilosity quality of being covered with short hairs or soft down. + PATOC:GVG + + + + + + + + + An angle which is 90 degrees to another entity. + quality + PATO:0001321 + + + right angle to + + + + + An angle which is 90 degrees to another entity. + thesaurus.math:thesaurus.math + + + + + + + + + An angle which is 180 degrees to another entity. + quality + PATO:0001322 + + + TODO: decide on correct parentage. + straight angle to + + + + + An angle which is 180 degrees to another entity. + thesaurus.maths:thesaurus.maths + + + + + + + + + A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent. + quality + PATO:0001323 + + + + area + + + + + A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent. + Wikipedia:http://en.wikipedia.org/wiki/Area + + + + + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's being symmetric about a plane running from its frontal end to its caudal end (head to tail), and has nearly identical right and left halves. + left-right symmetry + quality + pennate + PATO:0001324 + + + bilateral symmetry + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's being symmetric about a plane running from its frontal end to its caudal end (head to tail), and has nearly identical right and left halves. + Wikipedia:http://en.wikipedia.org/wiki/Bilateral_symmetry + + + + + pennate + https://orcid.org/0000-0001-5208-3432 + https://orcid.org/0000-0002-2908-3327 + + + + + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's having equal proportion around a central point or axis. + centric + quality + PATO:0001325 + + + radial symmetry + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's having equal proportion around a central point or axis. + PATOC:GVG + + + + + centric + https://orcid.org/0000-0001-5208-3432 + https://orcid.org/0000-0002-2908-3327 + + + + + + + + + quality + PATO:0001326 + + obsolete left-right symmetry + true + + + + + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by only one longitudinal plane passing through the axis. + quality + PATO:0001327 + + + zygomorphic + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by only one longitudinal plane passing through the axis. + WordNet:WordNet + + + + + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by any longitudinal plane passing through the axis. + quality + PATO:0001328 + + + actinomorphic + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by any longitudinal plane passing through the axis. + WordNet:WordNet + + + + + + + + + + A flavor quality inhering in a bearer by virtue of the bearer's having flavour. + quality + PATO:0001329 + + + flavourful + + + + + A flavor quality inhering in a bearer by virtue of the bearer's having flavour. + PATOC:GVG + + + + + + + + + A flavor quality inhering in a bearer by virtue of the bearer's lacking flavour. + quality + PATO:0001330 + + + flavourless + + + + + A flavor quality inhering in a bearer by virtue of the bearer's lacking flavour. + PATOC:GVG + + + + + + + + + An odor quality inhering in a bearer by virtue of the bearer's having odour. + quality + PATO:0001331 + + odorous + + + + + An odor quality inhering in a bearer by virtue of the bearer's having odour. + PATOC:GVG + + + + + + + + + A morphology quality inhering in a bearer by virtue of the bearer's lack of distinct morphology. + quality + PATO:0001332 + + + + amorphous + + + + + A morphology quality inhering in a bearer by virtue of the bearer's lack of distinct morphology. + PATOC:GVG + + + + + + + + + + A quality of a process which ends later than the natural end time. + quality + PATO:0001333 + + temporally extended + + + + + A quality of a process which ends later than the natural end time. + PATOC:melissa + + + + + + + + + A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. + quality + PATO:0001334 + + + + diameter + + + + + A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. + Wikipedia:http://en.wikipedia.org/wiki/Diameter + + + + + + + + + A mating type that indicates whether the F plasmid has integrated into the chromosome. + quality + PATO:0001335 + + bacterial mating type + + + + + A mating type that indicates whether the F plasmid has integrated into the chromosome. + MGED:MGED + + + + + + + + + A biological sex quality inhering in an individual whose sex is unknown. + quality + PATO:0001336 + + Unknown is not a type of sex. + obsolete unknown sex + true + + + + + A biological sex quality inhering in an individual whose sex is unknown. + MGED:MGED + + + + + + + + + A yeast mating type. + quality + PATO:0001337 + + yeast mating type + + + + + A yeast mating type. + PATOC:GVG + + + + + + + + + A biological sex quality inhering in a population of multiple sexes. + quality + PATO:0001338 + + For example a mixture of females and male or males and hermaphrodites. + mixed sex + + + + + A biological sex quality inhering in a population of multiple sexes. + MGED:MGED + + + + + + + + + A composition quality inhering in an bearer by virtue of the bearer's homogeneity of a biomaterial. + quality + PATO:0001339 + + + biomaterial purity + + + + + A composition quality inhering in an bearer by virtue of the bearer's homogeneity of a biomaterial. + MGED:MGED + + + + + + + + + A biological sex quality inhering in an organism or a population with both male and female sexual organs in one individual. + intersex + quality + PATO:0001340 + + hermaphrodite + + + + + A biological sex quality inhering in an organism or a population with both male and female sexual organs in one individual. + MGED:MGED + + + + + + + + + A S. cerevisiae mating type cells that secrete a pheromone that in alpha haploids stimulates processes that lead to mating. + a + quality + PATO:0001341 + + a mating type (yeast) + + + + + A S. cerevisiae mating type cells that secrete a pheromone that in alpha haploids stimulates processes that lead to mating. + MGED:MGED + + + + + + + + + A S. cerevisiae mating type. + quality + PATO:0001342 + + Saccharomyces cerevisiae mating type + + + + + A S. cerevisiae mating type. + PATOC:GVG + + + + + + + + + A S. pombe mating type determined by the gene configuration on the mat1 locus. + quality + PATO:0001343 + + Schizosaccharomyces pombe mating type + + + + + A S. pombe mating type determined by the gene configuration on the mat1 locus. + PATOC:GVG + + + + + + + + + A S. cerevisiae mating type cells that secrete a pheromone that stimulates a haploids. + alpha + quality + PATO:0001344 + + alpha mating type (yeast) + + + + + A S. cerevisiae mating type cells that secrete a pheromone that stimulates a haploids. + MGED:MGED + + + + + + + + + A S. pombe mating type determined by the mat1-Mc and mat1-Mi on the mat1 locus. + M + h - + quality + PATO:0001345 + + h minus + + + + + A S. pombe mating type determined by the mat1-Mc and mat1-Mi on the mat1 locus. + PATOC:GVG + + + + + + + + + A S. pombe mating type determined by the mat1-Pc and mat1-Pi on the mat1 locus. + P + h+ + quality + PATO:0001346 + + h plus + + + + + A S. pombe mating type determined by the mat1-Pc and mat1-Pi on the mat1 locus. + PATOC:GVG + + + + + + + + + A bacterial mating type indicating the presence of F plasmid in a bacterial cell. + quality + PATO:0001347 + + F mating type + + + + + A bacterial mating type indicating the presence of F plasmid in a bacterial cell. + MGED:MGED + + + + + + + + + A bacterial mating type indicating the absence of F plasmid in a bacterial cell. + F- + quality + PATO:0001348 + + F minus mating type + + + + + A bacterial mating type indicating the absence of F plasmid in a bacterial cell. + MGED:MGED + + + + + + + + + A mating type that indicates that the F plasmid has integrated into the chromosome. + Hfr + quality + PATO:0001349 + + high frequency recombinant + + + + + A mating type that indicates that the F plasmid has integrated into the chromosome. + MGED:MGED + + + + + + + + + A physical quality inhering in a bearer by virtue of the rate of change of the bearer's angular velocity. + quality + PATO:0001350 + + + angular acceleration + + + + + A physical quality inhering in a bearer by virtue of the rate of change of the bearer's angular velocity. + Wikipedia:http://en.wikipedia.org/wiki/Angular_acceleration + + + + + + + + + A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given area. + quality + PATO:0001351 + + + area density + + + + + A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given area. + Wikipedia:http://en.wikipedia.org/wiki/Area_density + + + + + + + + + A density quality which is equal to the mass exerting an influence on a one-dimensional object. + quality + PATO:0001352 + + + linear density + + + + + A density quality which is equal to the mass exerting an influence on a one-dimensional object. + Wikipedia:http://en.wikipedia.org/wiki/Linear_density + + + + + + + + + A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given volume. + quality + PATO:0001353 + + + volumetric density + + + + + A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given volume. + Wikipedia:http://en.wikipedia.org/wiki/Mass_density + + + + + + + + + A optical quality inhering in a bearer by virtue of the bearer's exhibiting low opacity. + quality + PATO:0001354 + + translucent + + + + + A optical quality inhering in a bearer by virtue of the bearer's exhibiting low opacity. + PATOC:GVG + + + + + + + + + A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere. + + quality + PATO:0001355 + + + convex + + + + + A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere. + PATOC:GVG + + + + + + + + + A shape quality inhering in a cell by virtue of the bearer's ability to take on two or more different shapes during its life cycle. + quality + PATO:0001356 + + + + + pleomorphic + + + + + A shape quality inhering in a cell by virtue of the bearer's ability to take on two or more different shapes during its life cycle. + PATOC:GVG + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped like a cushion or has a marked convex cushion-like form. + quality + PATO:0001357 + + + pulvinate + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped like a cushion or has a marked convex cushion-like form. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having a knob or knoblike protuberance. + quality + PATO:0001358 + + + umbonate + + + + + A quality inhering in a bearer by virtue of the bearer's having a knob or knoblike protuberance. + PATOC:GVG + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having many wrinkles or creases on the surface. + quality + PATO:0001359 + + + + rugose + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having many wrinkles or creases on the surface. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having thin filamentous extensions at its edge. + quality + PATO:0001360 + + + filamentous + + + + + A shape quality inhering in a bearer by virtue of the bearer's having thin filamentous extensions at its edge. + PATOC:GVG + + + + + + + + + A texture quality inhering in a bearer by virtue of the bearer's being covered with warts or projections that resemble warts resulting in a hard rough surface. + quality + PATO:0001361 + + + warty + + + + + A texture quality inhering in a bearer by virtue of the bearer's being covered with warts or projections that resemble warts resulting in a hard rough surface. + PATOC:GVG + + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed. + + quality + PATO:0001362 + + + fragile + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed. + WordNet:WordNet + + + + + + + + + + + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having root like extensions radiating from its center. + quality + PATO:0001364 + + rhizoidal + + + + + A quality inhering in a bearer by virtue of the bearer's having root like extensions radiating from its center. + PATOC:GVG + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having spines, thorns or similar thin projections on its surface. + quality + PATO:0001365 + + + spiny + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having spines, thorns or similar thin projections on its surface. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being small and resembling a point. + quality + PATO:0001366 + + + + punctiform + + + + + A shape quality inhering in a bearer by virtue of the bearer's being small and resembling a point. + PATOC:GVG + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes. + quality + PATO:0001367 + + + + lobate + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes. + PATOC:GVG + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having an irregularly toothed edge. + quality + jagged + PATO:0001368 + + + erose + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having an irregularly toothed edge. + PATOC:GVG + + + + + + + + + A shape quality inhering in a colony by virtue of the bearer's appearing above the medium surface with terraced edges. + quality + PATO:0001369 + + + raised + + + + + A shape quality inhering in a colony by virtue of the bearer's appearing above the medium surface with terraced edges. + PATOC:GVG + + + + + + + + + A coating quality which is sticky or clammy. + quality + PATO:0001370 + + viscid + + + + + A coating quality which is sticky or clammy. + PATOC:GVG + + + + + + + + + A composition quality inhering in an bearer by virtue of the bearer's consistency of mucus. + quality + mucinous + mucous + PATO:0001371 + + + mucoid + + + + + A composition quality inhering in an bearer by virtue of the bearer's consistency of mucus. + PATOC:GVG + + + + + + + + + A physical quality that inheres in propagating wave (light or sound) virtue of the bearer's change in direction when passing from one medium to another. + quality + PATO:0001372 + + + refractivity + + + + + A physical quality that inheres in propagating wave (light or sound) virtue of the bearer's change in direction when passing from one medium to another. + WordNet:WordNet + + + + + + + + + A reflectivity quality inhering in a bearer by virtue of the bearer's reflecting lots of light. + glossy + shiny + quality + PATO:0001373 + + glistening + + + + + A reflectivity quality inhering in a bearer by virtue of the bearer's reflecting lots of light. + PATOC:GVG + + + + + + + + + A cellular quality inhering in a bearer by virtue of the bearer's number of homologous sets of chromosomes in the nucleus or primary chromosome-containing compartment of the cell, each set essentially coding for all the biological traits of the organism. + quality + PATO:0001374 + + ploidy + + + + + A cellular quality inhering in a bearer by virtue of the bearer's number of homologous sets of chromosomes in the nucleus or primary chromosome-containing compartment of the cell, each set essentially coding for all the biological traits of the organism. + Wikipedia:http://en.wikipedia.org/wiki/Ploidy + + + + + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of homologous chromosomes. + quality + PATO:0001375 + + + haploid + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of homologous chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Haploid + + + + + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of unique homologous chromosomes. + quality + PATO:0001376 + + + monoploid + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of unique homologous chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Monoploid + + + + + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing more than two homologous sets of chromosomes. + quality + PATO:0001377 + + + polyploid + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing more than two homologous sets of chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Polyploid + + + + + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from a single species. + quality + PATO:0001378 + + + autopolyploid + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from a single species. + Wikipedia:http://en.wikipedia.org/wiki/Autopolyploid + + + + + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from different species. + quality + PATO:0001379 + + + allopolyploidy + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from different species. + Wikipedia:http://en.wikipedia.org/wiki/Allopolyploidy + + + + + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's having an ancient polyploid ancestor. + quality + PATO:0001380 + + paleopolyploid + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's having an ancient polyploid ancestor. + Wikipedia:http://en.wikipedia.org/wiki/Paleopolyploid + + + + + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing three homologous sets of chromosomes. + quality + PATO:0001381 + + + triploid + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing three homologous sets of chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Triploid + + + + + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes. + quality + PATO:0001382 + + + tetraploid + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Tetraploid + + + + + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing five homologous sets of chromosomes. + quality + PATO:0001383 + + + pentaploid + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing five homologous sets of chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Pentaploid + + + + + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes. + quality + PATO:0001384 + + + hexaploid + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Hexaploid + + + + + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing a non-integral multiple of the monoploid number, due to extra or missing chromosomes. + quality + PATO:0001385 + + + aneuploid + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing a non-integral multiple of the monoploid number, due to extra or missing chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Aneuploid + + + + + + + + + An aneuploidy quality inhering in a bearer by virtue of the bearer's containing only one chromosome from a pair in a cell's nucleus. + quality + PATO:0001386 + + + monosomy + + + + + An aneuploidy quality inhering in a bearer by virtue of the bearer's containing only one chromosome from a pair in a cell's nucleus. + Wikipedia:http://en.wikipedia.org/wiki/Monosomy + + + + + + + + + An aneuploidy quality inhering in a bearer by virtue of the bearer's containing only two chromosome from a pair in a cell's nucleus. + quality + PATO:0001387 + + + For diploid organisms, such as humans, it is the normal condition, whilst for organisms that are normally triploid or above, disomy is an aneuploidy. + disomy + + + + + An aneuploidy quality inhering in a bearer by virtue of the bearer's containing only two chromosome from a pair in a cell's nucleus. + Wikipedia:http://en.wikipedia.org/wiki/Disomy + + + + + + + + + A disomy quality inhering in a bearer by virtue of the bearer's containing two copies of the chromosome from one of the parents (with no contribution from the other parent). + quality + PATO:0001388 + + + uniparental disomy + + + + + A disomy quality inhering in a bearer by virtue of the bearer's containing two copies of the chromosome from one of the parents (with no contribution from the other parent). + Wikipedia:http://en.wikipedia.org/wiki/Uniparental_disomy + + + + + + + + + An aneuploidy quality inhering in a bearer by virtue of the bearer's containing three, instead of two, chromosomes of a particular numbered type in an organism. + quality + PATO:0001389 + + + trisomy + + + + + An aneuploidy quality inhering in a bearer by virtue of the bearer's containing three, instead of two, chromosomes of a particular numbered type in an organism. + Wikipedia:http://en.wikipedia.org/wiki/Trisomy + + + + + + + + + A trisomy quality inhering in a bearer when part of the bearer's extra chromosome is attached to one of the other chromosomes, or if one of the bearer's chromosomes has two copies of part of its chromosome. + quality + PATO:0001390 + + partial trisomy + + + + + A trisomy quality inhering in a bearer when part of the bearer's extra chromosome is attached to one of the other chromosomes, or if one of the bearer's chromosomes has two copies of part of its chromosome. + Wikipedia:http://en.wikipedia.org/wiki/Partial_trisomy + + + + + + + + + A trisomy quality inhering in a bearer by virtue of the bearer's having extra chromosomal material in only some of it's cells. + quality + PATO:0001391 + + + mosaic trisomy + + + + + A trisomy quality inhering in a bearer by virtue of the bearer's having extra chromosomal material in only some of it's cells. + PATOC:GVG + + + + + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's chromosome number being increased by endomitosis and for which the degree of ploidy is proportional to the number of times that endomitosis has taken place. + quality + PATO:0001392 + + + endopolyploid + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's chromosome number being increased by endomitosis and for which the degree of ploidy is proportional to the number of times that endomitosis has taken place. + Wikipedia:http://en.wikipedia.org/wiki/Endopolyploid + + + + + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing an integral multiple of the monoploid number, possibly excluding the sex-determining chromosomes. + quality + PATO:0001393 + + + euploid + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing an integral multiple of the monoploid number, possibly excluding the sex-determining chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Euploid + + + + + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's having two copies (homologs) of each chromosome, usually one from the mother and one from the father. + quality + PATO:0001394 + + + The exact number may be one or two different from the 2n number and still be classified as diploidy (although with aneuploidy). Nearly all mammals are diploid organisms, although all individuals have some small fracton of cells that are polyploidy. + diploid + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's having two copies (homologs) of each chromosome, usually one from the mother and one from the father. + Wikipedia:http://en.wikipedia.org/wiki/Diploid + + + + + + + + + A diploidy quality inhering in a bearer in by virtue of belonging in a species whose one of the sexes has haploid cells and the other has diploid cells. + quality + PATO:0001395 + + + haplodiploid + + + + + A diploidy quality inhering in a bearer in by virtue of belonging in a species whose one of the sexes has haploid cells and the other has diploid cells. + Wikipedia:http://en.wikipedia.org/wiki/Haplodiploid + + + + + + + + + A monadic quality of continuant that exists at the cellular level of organisation. + quality + PATO:0001396 + cellular quality + + + + + A monadic quality of continuant that exists at the cellular level of organisation. + PATOC:GVG + + + + + + + + + A cellular quality that arises by virtue of whether the bearer's disposition to differentiate into one or more mature cell types. + quality + PATO:0001397 + + + cellular potency + + + + + A cellular quality that arises by virtue of whether the bearer's disposition to differentiate into one or more mature cell types. + PATOC:GVG + + + + + + + + + A cellular quality inhering in a bearer by virtue of the bearer's having the ability to go through numerous cycles of cell division while maintaining the undifferentiated state. + quality + PATO:0001398 + + + self-renewal + + + + + A cellular quality inhering in a bearer by virtue of the bearer's having the ability to go through numerous cycles of cell division while maintaining the undifferentiated state. + PATOC:GVG + + + + + + + + + A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers and extraembryonic cell types. + quality + PATO:0001399 + + + + totipotent + + + + + A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers and extraembryonic cell types. + Wikipedia:http://en.wikipedia.org/wiki/Totipotent + + + + + + + + + A cellular potency that is the capacity to produce only one differentiated cell type. + quality + PATO:0001400 + + + + Unipotent cells have the quality of self-renewal which distinguishes them from non-stem cells. + unipotent + + + + + A cellular potency that is the capacity to produce only one differentiated cell type. + Wikipedia:http://en.wikipedia.org/wiki/Unipotent + + + + + + + + + A cellular potency that is the capacity to form multiple differentiated cell types of a specific lineage and lack self renewing capacity. + quality + PATO:0001401 + + + + Less potent than multipotent, often thought of as precursor or progenitor cell status. + oligopotent + + + + + A cellular potency that is the capacity to form multiple differentiated cell types of a specific lineage and lack self renewing capacity. + PATOC:MAH + + + + + + + + + A cellular potency that is the capacity to form multiple differentiated cell types. + quality + PATO:0001402 + + + + multipotent + + + + + A cellular potency that is the capacity to form multiple differentiated cell types. + Wikipedia:http://en.wikipedia.org/wiki/Multipotent + + + + + + + + + A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers but not extraembryonic cell types. + quality + PATO:0001403 + + + + pluripotent + + + + + A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers but not extraembryonic cell types. + Wikipedia:http://en.wikipedia.org/wiki/Pluripotent + + + + + + + + + A cellular quality inhering in a bearer by virtue of bearer's number of nuclei. + quality + PATO:0001404 + + nucleate quality + + + + + A cellular quality inhering in a bearer by virtue of bearer's number of nuclei. + PATOC:GVG + + + + + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having no nucleus. + quality + PATO:0001405 + + + + anucleate + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having no nucleus. + Biology-online:Biology-online + + + + + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei. + quality + PATO:0001406 + + + + binucleate + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei. + Biology-online:Biology-online + + + + + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus. + quality + PATO:0001407 + + + + mononucleate + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus. + Biology-online:Biology-online + + + + + + + + + A cellular quality inhering in a bearer by virtue of the bearer's having thin, tail-like projections extending outwards from the cell body. + quality + PATO:0001408 + + + ciliatedness + + + + + A cellular quality inhering in a bearer by virtue of the bearer's having thin, tail-like projections extending outwards from the cell body. + Wikipedia:http://en.wikipedia.org/wiki/Ciliated + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's resembling a long tapered rod. + quality + PATO:0001409 + + + + spindle-shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's resembling a long tapered rod. + Biology-online:Biology-online + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel. + quality + PATO:0001410 + + + + striated + + + + + A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel. + Biology-online:Biology-online + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having distinct structure. + + quality + PATO:0001411 + + structured + + + + + A structural quality inhering in a bearer by virtue of the bearer's having distinct structure. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure. + + quality + PATO:0001412 + + unstructured + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the rate of the bearer's angular movement about an axis; the angle rotated in a given time. + quality + PATO:0001413 + + + angular velocity + + + + + A physical quality inhering in a bearer by virtue of the rate of the bearer's angular movement about an axis; the angle rotated in a given time. + Wikipedia:http://en.wikipedia.org/wiki/Angular_velocity + + + + + + + + + A physical quality inhering in a catalyst by virtue of the amount of the catalyst's action. + quality + PATO:0001414 + + + catalytic activity + + + + + A physical quality inhering in a catalyst by virtue of the amount of the catalyst's action. + PATOC:GVG + + + + + + + + + A quality inhering in a population by virtue of the proportion of its members that are ill at a given time. + quality + PATO:0001415 + + + morbidity + + + + + A quality inhering in a population by virtue of the proportion of its members that are ill at a given time. + PATOC:GVG + + + + + + + + + A duration which has regular start and/or end times. + + quality + PATO:0001416 + + regular duration + + + + + A duration which has regular start and/or end times. + PATOC:GVG + + + + + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times. + + quality + PATO:0001417 + + irregular duration + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times. + PATOC:melissa + + + + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's being deficient in alertness or activity. + quality + PATO:0001418 + + lethargic + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's being deficient in alertness or activity. + WordNet:WordNet + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge. + quality + PATO:0001419 + + + sharp + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to rise or float in a fluid medium such as water or air. + quality + PATO:0001420 + + + + buoyancy + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to rise or float in a fluid medium such as water or air. + PATOC:GVG + + + + + + + + + A viability quality inhering in a bearer by virtue of the bearer's condition before death. + quality + PATO:0001421 + + alive + + + + + A viability quality inhering in a bearer by virtue of the bearer's condition before death. + PATOC:GVG + + + + + + + + + A viability quality inhering in a bearer by virtue of the cessation of the bearer's life. + quality + PATO:0001422 + + dead + + + + + A viability quality inhering in a bearer by virtue of the cessation of the bearer's life. + PATOC:GVG + + + + + + + + + A reflectivity quality inhering in the bearer by virtue of the bearer's ability to refract light. + quality + PATO:0001423 + + + refractile + + + + + A reflectivity quality inhering in the bearer by virtue of the bearer's ability to refract light. + biology-online:biology-online + + + + + + + + + A color hue with very low wavelength of that portion of the visible spectrum lying between reddish blue or bluish purple, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 380 nanometers. + quality + PATO:0001424 + + + violet + + + + + A color hue with very low wavelength of that portion of the visible spectrum lying between reddish blue or bluish purple, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 380 nanometers. + Wikipedia:http://en.wikipedia.org/wiki/Violet + + + + + + + + + A color hue consisting of red hue and yellow hue and high brightness. + quality + PATO:0001425 + + rosy + + + + + A color hue consisting of red hue and yellow hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of purple and brown hue. + quality + PATO:0001426 + + + maroon + + + + + A color consisting of purple and brown hue. + Wikipedia:http://en.wikipedia.org/wiki/Maroon + + + + + + + + + A concentration quality inhering in compound by virtue of the bearer's tendency to act as a hydron donor. + quality + PATO:0001427 + + + compound acidity + + + + + A concentration quality inhering in compound by virtue of the bearer's tendency to act as a hydron donor. + chemicool:chemicool + + + + + + + + + A concentration quality inhering in a medium by virtue of the bearer's tendency to hydronate a specific reference base. + quality + PATO:0001428 + + + medium acidity + + + + + A concentration quality inhering in a medium by virtue of the bearer's tendency to hydronate a specific reference base. + chemicool:chemicool + + + + + + + + + An medium acidity quality inhering in a solution by virtue of the bearer's a high concentration of H+ ions. + quality + PATO:0001429 + + acidic + + + + + An medium acidity quality inhering in a solution by virtue of the bearer's a high concentration of H+ ions. + chemicool:chemicool + + + + + + + + + An medium acidity quality inhering in a solution by virtue of the bearer's a low concentration of H+ ions. + quality + PATO:0001430 + + alkaline + + + + + An medium acidity quality inhering in a solution by virtue of the bearer's a low concentration of H+ ions. + chemicool:chemicool + + + + + + + + + An emergent molecular quality that arises by virtue of the bearer's disposition to exhibit molecular attraction to another entity in contact. + adhesiveness + quality + stickiness + PATO:0001431 + + + + The definition is general enough to cover adhesion arising from different kinds of chemical bonding/forces, although for PATO this term will most commonly used for cellular adhesion. See also GO:0031589 "cell-substrate adhesion". + adhesivity + + + + + An emergent molecular quality that arises by virtue of the bearer's disposition to exhibit molecular attraction to another entity in contact. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's decomposition into component parts. + quality + PATO:0001432 + + decayed + + + + + A quality inhering in a bearer by virtue of the bearer's decomposition into component parts. + Medical-dictionary:Medical-dictionary + + + + + + + + + A quality of a single process which describes the growth of an organism, structure, or group of organisms. + PATO:0001489 + quality + growth quality of a process + growth timing quality + PATO:0001433 + + growth quality of occurrent + + + + + A quality of a single process which describes the growth of an organism, structure, or group of organisms. + PATOC:MAH + + + + + + + + + An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring. + quality + PATO:0001434 + reproductive quality + + + + + An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring. + WordNet:WordNet + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity. + quality + PATO:0001435 + + + attachment quality + + + + + A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity. + PATOC:GVG + + + + + + + + + An attachment quality inhering in a flower by virtue of the bearer's lacking a stalk, as in flowers or leaves that grow directly from the stem. + quality + PATO:0001436 + + + sessile (sensu botany) + + + + + An attachment quality inhering in a flower by virtue of the bearer's lacking a stalk, as in flowers or leaves that grow directly from the stem. + Wikipedia:http://en.wikipedia.org/wiki/Sessility_(botany) + + + + + + + + + A attachment quality inhering in a bearer by virtue of the bearer's inability to move about. + quality + PATO:0001437 + + + + sessile (sensu zoology) + + + + + A attachment quality inhering in a bearer by virtue of the bearer's inability to move about. + Wikipedia:http://en.wikipedia.org/wiki/Sessile_(zoology) + + + + + + + + + A attachment quality inhering in a bearer by virtue of the bearer's having or being supported by a pedicel or pedicle. + quality + PATO:0001438 + + + pedicellate + + + + + A attachment quality inhering in a bearer by virtue of the bearer's having or being supported by a pedicel or pedicle. + MedTerms:MedTerms + + + + + + + + + A contractile quality inhering in a bearer by virtue of the bearer's elastic tension that facilitate response to stimuli. + PATO:0001498 + tone + quality + PATO:0001439 + + + + TODO: we need a clearer differentium between this and contractility - or merge? + tonicity + + + + + A contractile quality inhering in a bearer by virtue of the bearer's elastic tension that facilitate response to stimuli. + WordNet:WordNet + + + + + + + + + + A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an identical molecule in an adjacent cell. + quality + PATO:0001440 + + + homophilic + + + + + A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an identical molecule in an adjacent cell. + GO:GO + + + + + + + + + A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an nonidentical molecule in an adjacent cell. + quality + PATO:0001441 + + + heterophilic + + + + + A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an nonidentical molecule in an adjacent cell. + GO:GO + + + + + + + + + A structural quality inhering in a bearer by virtue of whether the bearer includes all its components. + quality + PATO:0001442 + + wholeness + + + + + A structural quality inhering in a bearer by virtue of whether the bearer includes all its components. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + + true + + + + + + + + + + A broken quality inhering in a bearer by virtue of the bearer's being broken open. + PATO:0001443 + PATO:0001820 + burst + fractured + fragmented + ruptured + quality + cracked + hemorrhaged + split + torn + PATO:0001444 + + broken + + + + + A broken quality inhering in a bearer by virtue of the bearer's being broken open. + PATOC:GVG + + + + + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's being taken apart into its constituent parts. + quality + PATO:0001445 + + disassembled + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's being taken apart into its constituent parts. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's including all its components. + quality + PATO:0001446 + + whole + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's including all its components. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A composition quality inhering in an bearer by virtue of the bearer's being encrusted or impregnated with calcium carbonate (CHEBI:3311). + calcareous + calcification + quality + PATO:0001447 + + + + calcified + + + + + A composition quality inhering in an bearer by virtue of the bearer's being encrusted or impregnated with calcium carbonate (CHEBI:3311). + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A composition quality inhering in an bearer by virtue of the bearer's being hardened by the deposition of calcium into bone. + quality + PATO:0001448 + + ossified + + + + + A composition quality inhering in an bearer by virtue of the bearer's being hardened by the deposition of calcium into bone. + MAMMALOGY:MAMMALOGY + + + + + + + + + A composition quality inhering in an bearer by virtue of the bearer's cartilage quantities. + quality + PATO:0001449 + + + Cartilage is a type of dense connective tissue. It is composed of specialized cells called chondrocytes (CL:0000138) that produce a large amount of extracellular matrix composed of collagen fibers, abundant ground substance rich in proteoglycan, and elastin fibers. + cartilaginous + + + + + A composition quality inhering in an bearer by virtue of the bearer's cartilage quantities. + Wikipedia:http://en.wikipedia.org/wiki/Cartilaginous + + + + + + + + + A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of extracellular fluid. + edemic + oedematous + oedemic + edema + oedema + quality + PATO:0001450 + + + edematous + + + + + A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of extracellular fluid. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + An extended swelling in plant organs caused primarily by an excessive accumulation of water. + quality + edemic + oedematous + oedemic + PATO:0001451 + obsolete edematous (sensu botany) + true + + + + + An extended swelling in plant organs caused primarily by an excessive accumulation of water. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + + true + + + + + + + + + An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity. + detached + quality + PATO:0001453 + + + + detached from + + + + + An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity. + PATOC:GVG + + + + + + + + + A sensitivity quality inhering in a bearer by virtue of the bearer's dependence on oxygen. + quality + PATO:0001454 + + + + sensitivity to oxygen + + + + + A sensitivity quality inhering in a bearer by virtue of the bearer's dependence on oxygen. + PATOC:GVG + + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's dependence on oxygen. + + quality + PATO:0001455 + + + aerobic + + + + + A quality inhering in a bearer by virtue of the bearer's dependence on oxygen. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's independence on oxygen. + + quality + PATO:0001456 + + + anaerobic + + + + + A quality inhering in a bearer by virtue of the bearer's independence on oxygen. + PATOC:GVG + + + + + + + + + A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation. + sensitivity of occurrent + quality + PATO:0001457 + + + + sensitivity of a process + + + + + A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation. + PATOC:GVG + + + + + + + + + A sensitivity of a process quality inhering in a bearer by virtue of the bearer's unfolding in a location with or without oxygen. + sensitivity of occurrent to oxygen + quality + PATO:0001458 + + + sensitivity of a process to oxygen + + + + + A sensitivity of a process quality inhering in a bearer by virtue of the bearer's unfolding in a location with or without oxygen. + PATOC:GVG + + + + + + + + + A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen. + + quality + PATO:0001459 + + + aerobic (for occurrence) + + + + + A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen. + PATOC:GVG + + + + + + + + + A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen. + + quality + PATO:0001460 + + + anaerobic (for occurrence) + + + + + A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen. + PATOC:GVG + + + + + + + + + A physical quality inhering in a liquid by virtue of the bearer's ability to attraction of molecules at its surface as a result of unbalanced molecular cohesive forces. + quality + PATO:0001461 + + + + surface tension + + + + + A physical quality inhering in a liquid by virtue of the bearer's ability to attraction of molecules at its surface as a result of unbalanced molecular cohesive forces. + Wikipedia:http://en.wikipedia.org/wiki/Surface_tension + + + + + + + + + A quality inhering in a cell's plasma membrane by virtue of the electrical potential difference across it. + quality + PATO:0001462 + + + membrane potential + + + + + A quality inhering in a cell's plasma membrane by virtue of the electrical potential difference across it. + Wikipedia:http://en.wikipedia.org/wiki/Membrane_potential + + + + + + + + + A quality inhering in a cell's plasma membrane by virtue of a brief fluctuation in the bearer's potential caused by the rapid opening and closing of voltage-gated ion channels. + quality + PATO:0001463 + + + action potential + + + + + A quality inhering in a cell's plasma membrane by virtue of a brief fluctuation in the bearer's potential caused by the rapid opening and closing of voltage-gated ion channels. + Wikipedia:http://en.wikipedia.org/wiki/Action_potential + + + + + + + + + A quality that is equal to the potential energy per unit charge associated with a static (time-invariant) electric field, also called the electrostatic potential. + quality + PATO:0001464 + + + electric potential + + + + + A quality that is equal to the potential energy per unit charge associated with a static (time-invariant) electric field, also called the electrostatic potential. + Wikipedia:http://en.wikipedia.org/wiki/Electric_potential + + + + + + + + + A malformed quality inhering in a bearer by virtue of the bearer's all-encompassing, grotesque morphological defects. + quality + PATO:0001465 + + monstrous + + + + + A malformed quality inhering in a bearer by virtue of the bearer's all-encompassing, grotesque morphological defects. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the front of an organism. + curved anterior + curved superior (human torso) + quality + PATO:0001466 + + curved rostral + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the front of an organism. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the part of the body from which the tail arises. + curved inferior (human torso) + curved posterior + quality + PATO:0001467 + + curved caudal + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the part of the body from which the tail arises. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the back or upper surface of an organism. + curved posterior (human torso) + curved superior (human head) + quality + PATO:0001468 + + curved dorsal + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the back or upper surface of an organism. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the abdomen of an organism. + curved anterior (human torso) + curved inferior (human head) + quality + PATO:0001469 + + curved ventral + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the abdomen of an organism. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity. + proportion + proportionality + quotient + ratio + quality + rate + PATO:0001470 + + + Examples: height to weight; brain size to body size. These could all be children of proportionality. Proportions can be measured as ratios. Some measures may be dimensionless. Not all ratios measure proportionality, eg m/s measures velocity which is not a proportion in the sense defined above, it is a quality in its own right. + proportionality to + + + + + A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity. + PATOC:nw + + + + + + + + + + + true + + + + + + + + + + + + + + + + + + + + + A depth which is relatively low. + + PATO:0001692 + low depth + shallow + quality + PATO:0001472 + + decreased depth + + + + + A depth which is relatively low. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being present in two copies. + doubled + quality + PATO:0001473 + + + duplicated + + + + + A quality inhering in a bearer by virtue of the bearer's being present in two copies. + Dictionary.com:Dictionary.com + + + + + + + + + An oriented quality inhering in a bearer by virtue of the bearer's axis being positioned forward. + quality + PATO:0001474 + + + anteverted + + + + + An oriented quality inhering in a bearer by virtue of the bearer's axis being positioned forward. + bdid:bdid + + + + + + + + + + + + + + + + + + + + + A position which is relatively high. + + quality + high position + PATO:0001475 + + increased position + + + + + A position which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A positional which is relatively low. + + quality + low position + PATO:0001476 + + decreased position + + + + + A positional which is relatively low. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being drawn in or pulled back from any given point. + moved + quality + retruded + PATO:0001477 + + retracted + + + + + A positional quality inhering in a bearer by virtue of the bearer's being drawn in or pulled back from any given point. + Dictionary.com:Dictionary.com + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being broken down; caved in. + quality + PATO:0001478 + + + collapsed + + + + + A structural quality inhering in a bearer by virtue of the bearer's being broken down; caved in. + Dictionary.com:Dictionary.com + + + + + + + + + + + true + + + + + + + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's resembling a sponge in elasticity, absorbency, or porousness. + quality + PATO:0001480 + + + spongy + + + + + A structural quality inhering in a bearer by virtue of the bearer's resembling a sponge in elasticity, absorbency, or porousness. + Answers.com:Answers.com + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction. + quality + PATO:0001481 + + sloped + + + + + A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction. + WordNet:WordNet + + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line. + quality + PATO:0001482 + + prominent + + + + + A quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line. + Dictionary.com:Dictionary.com + + + + + + + + + + + + + + + + + + Absence of an organ, tissue or cell due to failure to develop from a primordium or precursor cell. + aplasia + undeveloped + quality + PATO:0001483 + + + With aplasia, the primordium or precursor develops, but does not proceed in its development to a mature structure + aplastic + + + + + Absence of an organ, tissue or cell due to failure to develop from a primordium or precursor cell. + PATOC:GVG + PATOC:PortlandMeetingFeb2015 + + + + + + + + + A quality of a process which occurs near to or not long before the present. + quality + PATO:0001484 + + recent + + + + + A quality of a process which occurs near to or not long before the present. + WordNet:WordNet + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together. + + PATO:0001840 + compact + compressed + squashed + quality + dense + PATO:0001485 + + + condensed + + + + + A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together. + PATOC:GVG + + + + + + + + + An age quality that exists by virtue of the time (years and months) that the bearer has existed. + quality + PATO:0001486 + + chronological age + + + + + An age quality that exists by virtue of the time (years and months) that the bearer has existed. + WordNet:Wordnet + + + + + + + + + A time quality inhering in a bearer by virtue of the bearer's growing old; aging. + quality + PATO:0001487 + + + senescent + + + + + A time quality inhering in a bearer by virtue of the bearer's growing old; aging. + answers.com:answers.com + + + + + + + + + A cellular quality inhering in a cell by virtue of whether the bearer exhibits the ability to move spontaneously. + quality + PATO:0001488 + + + + Term should be obsoleted and the GO term cellular motility should be used instead. + cellular motility + + + + + A cellular quality inhering in a cell by virtue of whether the bearer exhibits the ability to move spontaneously. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + + true + + + + + + + + + A growth quality of a process inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced or increased growth. + quality + PATO:0001490 + + heterochronic growth + + + + + A growth quality of a process inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced or increased growth. + PATOC:MAH + + + + + + + + + A paedomorphic growth quality which is due to a reduced rate. + neotenic growth + quality + PATO:0001491 + + neotenous growth + + + + + A paedomorphic growth quality which is due to a reduced rate. + PATOC:mh + + + + + + + + + quality + PATO:0001492 + + + This term will be obsoleted; Use GO:growth and PATO:rate. + growth rate + + + + + + + + + + quality + PATO:0001493 + + This term will be obsoleted; Use GO:growth and PATO:rate. + hypertrophic growth + + + + + + + + + + quality + PATO:0001494 + + This term will be obsoleted; Use GO:growth and PATO:rate. + hypotrophic growth + + + + + + + + + A concave quality inhering in a bearer by virtue of the bearer's shape being a V-shaped cut. + quality + indented + PATO:0001495 + + + + notched + + + + + A concave quality inhering in a bearer by virtue of the bearer's shape being a V-shaped cut. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A reproductive quality inhering in the young of an animal by virtue of the bearer's being cared for at one time. + quality + PATO:0001496 + + brood quality + + + + + A reproductive quality inhering in the young of an animal by virtue of the bearer's being cared for at one time. + WordNet:WordNet + + + + + + + + + A reproductive quality inhering in the young of an animal by virtue of the bearer's disposition to survive and develop normally. + quality + PATO:0001497 + + + brood viability + + + + + A reproductive quality inhering in the young of an animal by virtue of the bearer's disposition to survive and develop normally. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter). + PATO:0000408 + globular + quality + rotund + PATO:0001499 + + + + spherical + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter). + WordNet:WordNet + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being gradually narrower or thinner toward one end. + taper + quality + PATO:0001500 + + + tapered + + + + + A shape quality inhering in a bearer by virtue of the bearer's being gradually narrower or thinner toward one end. + WordNet:WordNet + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development. + + quality + underdeveloped + PATO:0001501 + + immature + + + + + A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development. + Merriam-Webster:Merriam-Webster + + + + + + + + + A monadic quality of continuant inhering in a bearer by virtue of the bearer's being intricate and compounded. + quality + PATO:0001502 + + TODO: obsolete this. + complexity + + + + + A monadic quality of continuant inhering in a bearer by virtue of the bearer's being intricate and compounded. + WordNet:WordNet + + + + + + + + + + A complexity quality in a bearer by virtue of the bearer's having few parts or being complicated or compound. + quality + PATO:0001503 + + + simple + + + + + A complexity quality in a bearer by virtue of the bearer's having few parts or being complicated or compound. + WordNet:WordNet + + + + + + + + + A complexity quality inhering in a bearer by virtue of the bearer's being intricate and compounded. + quality + PATO:0001504 + + + complex + + + + + A complexity quality inhering in a bearer by virtue of the bearer's being intricate and compounded. + WordNet:WordNet + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's not being in contact with another entity, or of no longer being connected or joined with another entity. + quality + discontiguous + divided_from + splitted from + PATO:0001505 + + + separated from + + + + + A structural quality inhering in a bearer by virtue of the bearer's not being in contact with another entity, or of no longer being connected or joined with another entity. + WordNet:WordNet + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's separation of normally joined parts, such as the separation of adjacent bones without fracture or of certain abdominal muscles during pregnancy. + quality + PATO:0001506 + + + diastatic + + + + + A structural quality inhering in a bearer by virtue of the bearer's separation of normally joined parts, such as the separation of adjacent bones without fracture or of certain abdominal muscles during pregnancy. + answers.com:answers.com + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being interrupted of its normal course. + quality + PATO:0001507 + + + disrupted + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being interrupted of its normal course. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + A quality of a single physical entity that arises by virtue of whether the bearer exhibits the ability to perform a regular function(s). + quality + PATO:0001509 + + + + functionality + + + + + A quality of a single physical entity that arises by virtue of whether the bearer exhibits the ability to perform a regular function(s). + PATOC:MAH + + + + + + + + + A functionality quality held by the bearer when the latter is able to perform a regular function(s). + + quality + PATO:0001510 + + + functional + + + + + A functionality quality held by the bearer when the latter is able to perform a regular function(s). + PATOC:MAH + + + + + + + + + A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s). + + PATO:0001640 + disfunctional + functional failure + quality + defective + failure + PATO:0001511 + + + non-functional + + + + + A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s). + PATC:MAH + + + + + + + + + A pattern inhering in a surface by virtue of the bearer's being marked by the presence of dots, punctures, points or pits. + quality + dotted + spotted + stippled + PATO:0001512 + + + punctate + + + + + A pattern inhering in a surface by virtue of the bearer's being marked by the presence of dots, punctures, points or pits. + medical-dictionary:medical-dictionary + + + + + + + + + + + true + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer. + quality + PATO:0001514 + + + delaminated + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer. + PATOC:cjm + + + + + + + + + A color quality inhering in a bearer by virtue of the bearer's being uneven in color. + quality + murky + PATO:0001515 + + variable color + + + + + A color quality inhering in a bearer by virtue of the bearer's being uneven in color. + PATOC:NC + + + + + + + + + An optical quality where light rays originating from a point on the object converge. + quality + PATO:0001516 + + focus + + + + + An optical quality where light rays originating from a point on the object converge. + Wikipedia:http://en.wikipedia.org/wiki/Focus_(optics) + + + + + + + + + An optical quality inhering in a bearer by virtue of the bearer's having focus. + quality + PATO:0001517 + + focused + + + + + An optical quality inhering in a bearer by virtue of the bearer's having focus. + PATOC:GVG + + + + + + + + + An optical quality inhering in a bearer by virtue of the bearer's lacking focus. + quality + PATO:0001518 + + blurry + + + + + An optical quality inhering in a bearer by virtue of the bearer's lacking focus. + PATOC:NC + + + + + + + + + A quality inhering in a bearer by virtue of vibration, as perceived by the sense of hearing. + quality + PATO:0001519 + + sound quality + + + + + A quality inhering in a bearer by virtue of vibration, as perceived by the sense of hearing. + Wikipedia:http://en.wikipedia.org/wiki/Sound_quality + + + + + + + + + The frequency of transmitted vibrations. + quality + PATO:0001520 + + + sound frequency + + + + + The frequency of transmitted vibrations. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A physical quality inhering in a sound wave by virtue of the maximum magnitude (value without regard to sign) of its disturbance. + loudness + quality + PATO:0001521 + + sound amplitude + + + + + A physical quality inhering in a sound wave by virtue of the maximum magnitude (value without regard to sign) of its disturbance. + answers.com:answers.com + + + + + + + + + A physical quality inhering in sound by virtue of the bearer's travelling speed in a given medium under specified conditions. + quality + PATO:0001522 + + + sound speed + + + + + A physical quality inhering in sound by virtue of the bearer's travelling speed in a given medium under specified conditions. + Wikipedia:http://en.wikipedia.org/wiki/Sound_speed + + + + + + + + + A physical quality which is equal to the quotient of the speed of a sound wave divided by its wavelength. + quality + PATO:0001523 + + + sound wavelength + + + + + A physical quality which is equal to the quotient of the speed of a sound wave divided by its wavelength. + Wikipedia:http://en.wikipedia.org/wiki/Sound_wavelength + + + + + + + + + A sound frequency in the range of 0-20 Hz. + quality + PATO:0001524 + + intrasonic + + + + + A sound frequency in the range of 0-20 Hz. + studyphysics:studyphysics + + + + + + + + + A sound frequency in the range of 20 to 20.000 Hz. + quality + PATO:0001525 + + sonic + + + + + A sound frequency in the range of 20 to 20.000 Hz. + url:http://www.studyphysics.ca/ + + + + + + + + + A sound frequency in the range of 20 000 + Hz. + quality + PATO:0001526 + + ultrasonic + + + + + A sound frequency in the range of 20 000 + Hz. + studyphysics:studyphysics + + + + + + + + + A sound amplitude which is relatively low. + quality + PATO:0001527 + + quiet + + + + + A sound amplitude which is relatively low. + PATOC:GVG + + + + + + + + + A sound amplitude which is relatively high. + quality + PATO:0001528 + + loud + + + + + A sound amplitude which is relatively high. + PATOC:GVG + + + + + + + + + A spatiotemporal quality inhering in a cell. + quality + PATO:0001529 + + cellular spatiotemporal quality + + + + + A spatiotemporal quality inhering in a cell. + PATOC:GVG + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's behavior. + behavioral quality of occurrent + quality + PATO:0001530 + + behavioral quality of a process + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's behavior. + PATOC:GVG + + + + + + + + + + A cellular quality that exists by virtue of the disposition of the cell to adhere to other cells and molecules, through the emergent action of the molecular parts of the cell surface. + quality + PATO:0001531 + + + cellular adhesivity + + + + + A cellular quality that exists by virtue of the disposition of the cell to adhere to other cells and molecules, through the emergent action of the molecular parts of the cell surface. + PATOC:cjm + + + + + + + + + A color pattern inhering in a bearer by virtue of the bearer's having one hue. + evenly colored + homogeneously colored + uniformly colored + quality + homogenously pigmented + PATO:0001532 + + mono-colored + + + + + A color pattern inhering in a bearer by virtue of the bearer's having one hue. + PATOC:GVG + + + + + + + + + A color pattern inhering in a bearer by virtue of bearer's having two or more hues or degrees of saturation. + variegated + quality + PATO:0001533 + + multi-colored + + + + + A color pattern inhering in a bearer by virtue of bearer's having two or more hues or degrees of saturation. + PATOC:GVG + + + + + + + + + A color pattern inhering in a bearer by virtue of bearer's having 3 or more hues or degrees of saturations. + quality + PATO:0001534 + + motley + + + + + A color pattern inhering in a bearer by virtue of bearer's having 3 or more hues or degrees of saturations. + merriam-webster.:merriam-webster. + + + + + + + + + A color pattern inhering in a bearer by virtue of bearer's being marked with small spots, patches, or specks of hue or degree of saturation differing from that of the background. + quality + speckled + PATO:0001535 + + dappled + + + + + A color pattern inhering in a bearer by virtue of bearer's being marked with small spots, patches, or specks of hue or degree of saturation differing from that of the background. + merriam-webster.:merriam-webster. + + + + + + + + + A molecular quality that inheres in a molecular entity by virtue of the bearer's disposition to dissolve in a liquid. + quality + PATO:0001536 + + + + + solubility + + + + + A molecular quality that inheres in a molecular entity by virtue of the bearer's disposition to dissolve in a liquid. + edp:edp + + + + + + + + + + A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid. + + soluble + quality + PATO:0001537 + + + + soluble in + + + + + A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid. + edp:edp + + + + + + + + + A solubility quality inhering in a substance by virtue of the bearer's inability of a substance to dissolve in a liquid. + + insoluble + quality + PATO:0001538 + + + + insoluble in + + + + + A solubility quality inhering in a substance by virtue of the bearer's inability of a substance to dissolve in a liquid. + edp:edp + + + + + + + + + A compositional quality inhering in an bearer by virtue of the bearer's quantities or relative ratios of amylose of the inhering entity. + amylose compositionality + quality + PATO:0001539 + + + amylose composition + + + + + A compositional quality inhering in an bearer by virtue of the bearer's quantities or relative ratios of amylose of the inhering entity. + PATOC:GVG + + + + + + + + + An amylose composition quality inhering in an bearer by virtue of the bearer's having negligible or no amylose content. + quality + PATO:0001540 + + glutinous + + + + + An amylose composition quality inhering in an bearer by virtue of the bearer's having negligible or no amylose content. + TO:TO + + + + + + + + + An amylose composition quality inhering in an bearer by virtue of the bearer's having high amount of amylose content. + quality + PATO:0001541 + + non-glutinous + + + + + An amylose composition quality inhering in an bearer by virtue of the bearer's having high amount of amylose content. + TO:TO + + + + + + + + + A phase which starts later than natural start point. + quality + PATO:0001542 + + delayed phase + + + + + A phase which starts later than natural start point. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking. + quality + PATO:0001543 + + + flexibility + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking. + merriam-webster:merriam-webster + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking. + + bendy + quality + PATO:0001544 + + + flexible + + + + + A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking. + merriam-webster:merriam-webster + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking. + + stiff + quality + stiffness + PATO:0001545 + + + inflexible + + + + + A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking. + merriam-webster:merriam-webster + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity characterized by particles arranged such that their shape and volume are relatively stable. + solidity + quality + PATO:0001546 + + quality of a solid + + + + + A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity characterized by particles arranged such that their shape and volume are relatively stable. + Chemistry:http://chemistry.about.com/od/chemistryglossary/a/soliddefinition.htm + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape. + gaseous + quality + PATO:0001547 + + quality of a gas + + + + + A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape. + Chemistry:http://chemistry.about.com/od/chemistryglossary/a/gasdefinition.htm + PATOC:GVG + + + + + + + + + A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape. + liquidity + quality + PATO:0001548 + + quality of a liquid + + + + + A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape. + url:http://www.chemistry-dictionary.com/definition/liquid.php + + + + + + + + + + + + + + + + + + + + + A sensitivity toward an external stimulus which is higher than normal/average. + + high sensitivity toward + increased sensitivity + quality + PATO:0001549 + + + + increased sensitivity toward + + + + + A sensitivity toward an external stimulus which is higher than normal/average. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A sensitivity toward an external stimulus which is lower than normal/average. + + decreased sensitivity + low sensitivity toward + quality + PATO:0001550 + + + + decreased sensitivity toward + + + + + A sensitivity toward an external stimulus which is lower than normal/average. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A sensitivity of a process which is higher than normal or average. + + high sensitivity of occurrent + increased sensitivity of occurrent + quality + PATO:0001551 + + + increased sensitivity of a process + + + + + A sensitivity of a process which is higher than normal or average. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A sensitivity of a process which is lower than normal or average. + + decreased sensitivity of occurrent + low sensitivity of occurrent + quality + PATO:0001552 + + + decreased sensitivity of a process + + + + + A sensitivity of a process which is lower than normal or average. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A sensitivity of occurrent to oxygen which is higher than normal or average. + + high sensitivity of occurrent to oxygen + quality + PATO:0001553 + + + increased sensitivity of a process to oxygen + + + + + A sensitivity of occurrent to oxygen which is higher than normal or average. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A sensitivity of a process to oxygen which is lower than normal or average. + + low sensitivity of occurrent to oxygen + quality + PATO:0001554 + + + decreased sensitivity of a process to oxygen + + + + + A sensitivity of a process to oxygen which is lower than normal or average. + PATO:GVG + + + + + + + + + + + + + + + The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts. + OBO_REL:has_part + extra or missing physical or functional parts + has or lacks parts of type + mereological quality + number of + quality + cardinality + number + PATO:0001555 + + + has number of + + + + + The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts. + PATOC:CJM + + + + + + + + + + + true + + + + + + + + + + + true + + + + + + + + + + + + + + + A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity. + quality + PATO:0001558 + + + lacking processual parts + + + + + A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A functionality quality which is held by the bearer when the latter is able to perform additional or different function(s). + having supernumerary functions + quality + PATO:0001559 + + + having extra function + + + + + A functionality quality which is held by the bearer when the latter is able to perform additional or different function(s). + PATO:MAH + + + + + + + + + + + true + + + + + + + + + A quality of a process inhering in a bearer by virtue of the bearer's having additional processual parts. + having supernumerary processual parts + quality + PATO:0001561 + + + having extra processual parts + + + + + A quality of a process inhering in a bearer by virtue of the bearer's having additional processual parts. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A mass which is lower than normal or average. + + PATO:0000579 + low mass + small mass + quality + PATO:0001562 + + decreased mass + + + + + A mass which is lower than normal or average. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A mass which is higher than normal or average. + + PATO:0000578 + high mass + large mass + quality + PATO:0001563 + + increased mass + + + + + A mass which is higher than normal or average. + PATO:GVG + + + + + + + + + A quality of a process inhering in a bearer by virtue of the bearer's processual parts. + quality + PATO:0001564 + + extra or missing processual parts + + + + + A quality of a process inhering in a bearer by virtue of the bearer's processual parts. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up. + + PATO:0001513 + diffuse + scattered + quality + PATO:0001566 + + + distributed + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up. + WordNet:WordNet + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up. + + quality + PATO:0001567 + + undistributed + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up. + WordNet:WordNet + + + + + + + + + + + true + + + + + + + + + + + true + + + + + + + + + A quality of a process inhering in a bearer by virtue of the bearer's having fewer processual parts. + quality + PATO:0001570 + + + having decreased processual parts + + + + + A quality of a process inhering in a bearer by virtue of the bearer's having fewer processual parts. + PATO:GVG + + + + + + + + + A size quality inhering in a bearer by virtue of the bearer's being made wider or larger in all dimensions. + quality + PATO:0001571 + + + dilated + + + + + A size quality inhering in a bearer by virtue of the bearer's being made wider or larger in all dimensions. + WordNet:WordNet + + + + + + + + + + + true + + + + + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's having equal dimensions or measurements. + quality + PATO:0001573 + + + isometrical + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's having equal dimensions or measurements. + WordNet:WordNet + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's motion characteristic. + quality + PATO:0001574 + + + flow rate + + + + + A physical quality inhering in a bearer by virtue of the bearer's motion characteristic. + WordNet:WordNet + + + + + + + + + + + + + + + + + + + + + A pressure which is relatively low. + + low pressure + quality + PATO:0001575 + + decreased pressure + + + + + A pressure which is relatively low. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A pressure which is relatively high. + + high pressure + quality + PATO:0001576 + + increased pressure + + + + + A pressure which is relatively high. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A permeability which is relatively high. + + high permeability + quality + PATO:0001577 + + + increased permeability + + + + + A permeability which is relatively high. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A permeability which is relatively low. + + low permeability + quality + PATO:0001578 + + + decreased permeability + + + + + A permeability which is relatively low. + PATO:GVG + + + + + + + + + A physical quality that is the ability to contract or shrink. + quality + PATO:0001579 + + + + contractility + + + + + A physical quality that is the ability to contract or shrink. + WordNet:WordNet + + + + + + + + + + + + + + + + + + + + + A contractility which is relatively high. + + high contractility + quality + PATO:0001580 + + + increased contractility + + + + + A contractility which is relatively high. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A contractility which is relatively low. + + low contractility + quality + PATO:0001581 + + + decreased contractility + + + + + A contractility which is relatively low. + PATO:GVG + + + + + + + + + A spatial quality inhering in an inactive muscle or muscle fibers by virtue of the bearer's exhibiting gradual lengthening. + quality + PATO:0001582 + GO has now relevant relation terms which should be used instead. + obsolete relaxational quality + true + + + + + A spatial quality inhering in an inactive muscle or muscle fibers by virtue of the bearer's exhibiting gradual lengthening. + WordNet:WordNet + + + + + + + + + + + + + + + + + + + + + A variability which is relatively low. + + low variability + quality + PATO:0001583 + + decreased variability + + + + + A variability which is relatively low. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A variability which is relatively high. + + high variability + quality + PATO:0001584 + + increased variability + + + + + A variability which is relatively high. + PATO:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to transmit of an entity through a medium. + quality + PATO:0001585 + + + + Examples could be heat or electricity or sound. + conductivity + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to transmit of an entity through a medium. + PATOC:GVG + + + + + + + + + + + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits rate variation or change. + quality + PATO:0001586 + + variability of rate + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits rate variation or change. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A variability of rate which is relatively high. + + high variability of rate + quality + PATO:0001587 + + increased variability of rate + + + + + A variability of rate which is relatively high. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A variability of rate which is relatively low. + + low variability of rate + quality + PATO:0001588 + + decreased variability of rate + + + + + A variability of rate which is relatively low. + PATO:GVG + + + + + + + + + Increased, intensified. + PATO:0002017 + quality + PATO:0001589 + Obsoleted because it used to be a child of behavioral quality, which really meant increased magnitude of a given behavior. Now this can be done by using increased magnitude with another quality. + obsolete enhanced + true + + + + + Increased, intensified. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's coinciding spatially, partially or wholly with another entity. + overlap + quality + PATO:0001590 + + + overlap with + + + + + A structural quality inhering in a bearer by virtue of the bearer's coinciding spatially, partially or wholly with another entity. + PATO:GVG + + + + + + + + + A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending. + quality + PATO:0001591 + + curvature + + + + + A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending. + WordNet:WordNet + + + + + + + + + + + + + + + + + + + + + A curvature which is relatively high. + + quality + PATO:0001592 + + increased curvature + + + + + A curvature which is relatively high. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A curvature which is relatively low. + + quality + PATO:0001593 + + decreased curvature + + + + + A curvature which is relatively low. + PATO:GVG + + + + + + + + + A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch. + quality + PATO:0001594 + + arched + + + + + A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch. + WordNet:WordNet + + + + + + + + + A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimenision. + quality + PATO:0001595 + + + depth + + + + + A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimenision. + WordNet:WordNet + + + + + + + + + + + + + + + + + + + + + A depth quality which is relatively high. + + PATO:0001666 + deep + quality + PATO:0001596 + + increased depth + + + + + A depth quality which is relatively high. + PATO:GVG + + + + + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being turned outward in placement. + quality + PATO:0001597 + + + everted + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being turned outward in placement. + thefreedictionary:thefreedictionary + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's extending out above or beyond a surface or boundary. + PATO:0001644 + protruding + relational protruding quality + quality + PATO:0001598 + + protruding + + + + + A quality inhering in a bearer by virtue of the bearer's extending out above or beyond a surface or boundary. + WordNet:WordNet + + + + + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being relocated around an axis. + rotation + quality + PATO:0001599 + + + rotated + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being relocated around an axis. + answers.com:answers.com + + + + + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the rear of organism. + quality + PATO:0001600 + + + posteriorly rotated + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the rear of organism. + PATOC:GVG + + + + + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the front of an organism. + quality + PATO:0001601 + + + anteriorly rotated + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the front of an organism. + PATOC:GVG + + + + + + + + + A size quality inhering in a bearer by virtue of the bearer's being abnormally expanded or increased in size. + quality + expanded + PATO:0001602 + + + distended + + + + + A size quality inhering in a bearer by virtue of the bearer's being abnormally expanded or increased in size. + WordNet:WordNet + + + + + + + + + + + + + + + + + + + + + A life span which is relatively high. + + high life span + quality + PATO:0001603 + increased life span + + + + + A life span which is relatively high. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A life span which is relatively low. + + low life span + quality + PATO:0001604 + decreased life span + + + + + A life span which is relatively low. + PATO:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being in disarray; extremely disorderly. + quality + PATO:0001605 + + + disheveled + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being in disarray; extremely disorderly. + WordNet:WordNet + + + + + + + + + A coating which is oily and slippery. + quality + PATO:0001606 + + + greasy + + + + + A coating which is oily and slippery. + .answers.com:.answers.com + + + + + + + + + A tangled quality inhering in a bearer by virtue of the bearer's being not possible to unravel. + quality + PATO:0001607 + + + matted + + + + + A tangled quality inhering in a bearer by virtue of the bearer's being not possible to unravel. + PATOC:MAH + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being marked by, consisting of, or diversified with patches. + quality + PATO:0001608 + + + patchy + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being marked by, consisting of, or diversified with patches. + Merriam-Webster:Merriam-Webster + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being scattered; spread irregularly, and at a distance from each other. + quality + PATO:0001609 + + + sparse + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being scattered; spread irregularly, and at a distance from each other. + biology.lsu:biology.lsu + + + + + + + + + + + true + + + + + + + + + + + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits color variation or change. + quality + PATO:0001611 + + variability of color + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits color variation or change. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A variability of color which is relatively high. + + high variability of color + quality + PATO:0001612 + + increased variability of color + + + + + A variability of color which is relatively high. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A variability of color which is relatively low. + + low variability of color + quality + PATO:0001613 + + decreased variability of color + + + + + A variability of color which is relatively low. + PATO:GVG + + + + + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color. + + quality + PATO:0001614 + + invariant color + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color. + PATO:GVG + + + + + + + + + A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour. + + quality + PATO:0001615 + + variant color + + + + + A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour. + PATO:GVG + + + + + + + + + + + true + + + + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's being distorted in form. + quality + disfigured + distorted + PATO:0001617 + + deformed + + + + + A morphological quality inhering in a bearer by virtue of the bearer's being distorted in form. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + + + + + + + + + + + + A tonicity which is relatively high. + + high tonicity + quality + PATO:0001618 + + + increased tonicity + + + + + A tonicity which is relatively high. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A tonicity which is relatively low. + + low tonicity + quality + PATO:0001619 + + + decreased tonicity + + + + + A tonicity which is relatively low. + PATO:GVG + + + + + + + + + A structural quality inhering in a cell or blood vessel or capillary by virtue of the bearer's being in a rigid state of fullness resulting from pressure of the contents against the wall or membrane. + quality + PATO:0001620 + + + turgor + + + + + A structural quality inhering in a cell or blood vessel or capillary by virtue of the bearer's being in a rigid state of fullness resulting from pressure of the contents against the wall or membrane. + WordNet:WordNet + + + + + + + + + + + + + + + + + + + + + A turgor which is relatively low. + + low turgor + quality + PATO:0001621 + + + decreased turgor + + + + + A turgor which is relatively low. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A turgor which is relatively high. + + high turgor + quality + PATO:0001622 + + + increased turgor + + + + + A turgor which is relatively high. + PATO:GVG + + + + + + + + + A size quality inhering in a bearer by virtue of a part or parts of the bearer's being decreased in size due to reduction in tissue mass through wasting. + atrophic + quality + PATO:0001623 + + + atrophied + + + + + A size quality inhering in a bearer by virtue of a part or parts of the bearer's being decreased in size due to reduction in tissue mass through wasting. + Wiikipedia:Wasting + Wikipedia:Atrophy + + + + + + + + + + + + + + + + + + + + + A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s). + + PATO:0001556 + PATO:0001568 + PATO:0001641 + PATO:0001642 + dysfunction + dysfunctional + having decreased function + lacks function of type + low functionality + partial functionality + quality + impaired + PATO:0001624 + + + decreased functionality + + + + + A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s). + PATO:MAH + + + + + + + + + + + + + + + + + + + + + A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s). + + high functionality + quality + PATO:0001625 + + + increased functionality + + + + + A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s). + PATO:MAH + + + + + + + + + A structural quality inhering in a bearer by virtue of whether the bearer has enough functionality. + quality + adequacy + PATO:0001626 + + This term and children should probably be obsoleted. + sufficiency + + + + + A structural quality inhering in a bearer by virtue of whether the bearer has enough functionality. + PATO:GVG + + + + + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality. + + quality + adequate + PATO:0001627 + + sufficient + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality. + PATO:GVG + + + + + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality. + + quality + inadequate + PATO:0001628 + + insufficient + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality. + PATO:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole. + clumped + clustered + quality + PATO:0001629 + + + aggregated + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole. + WordNet:WordNet + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent. + quality + PATO:0001630 + + + dispersed + + + + + A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent. + WordNet:WordNet + + + + + + + + + + + true + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front of an organism relative to another entity. + preceding + ventral_to + quality + PATO:0001632 + + + + anterior to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front of an organism relative to another entity. + PATOC:nw + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear of an organism relative to another entity. + posterior (human torso) + superior (human head) + quality + PATO:0001633 + + + + posterior to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear of an organism relative to another entity. + PATOC:nw + + + + + + + + + A quality of a single physical entity inhering in a bearer by virtue of whether the bearer is essential or indispensable. + quality + PATO:0001634 + + necessity (continuant) + + + + + A quality of a single physical entity inhering in a bearer by virtue of whether the bearer is essential or indispensable. + WordNet:WordNet + + + + + + + + + + A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being essential or indispensable. + + quality + PATO:0001635 + + necessary (continuant) + + + + + A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being essential or indispensable. + WordNet:WordNet + + + + + + + + + A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable. + + quality + PATO:0001636 + + unnecessary (continuant) + + + + + A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable. + WordNet:WordNet + + + + + + + + + A quality of single process inhering in a bearer by virtue of whether the bearer is essential or indispensable. + quality + PATO:0001637 + + necessity of occurrent + + + + + A quality of single process inhering in a bearer by virtue of whether the bearer is essential or indispensable. + PATO:GVG + + + + + + + + + A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable. + + quality + PATO:0001638 + + necessary (occurrent) + + + + + A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable. + PATO:GVG + + + + + + + + + A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable. + + quality + PATO:0001639 + + unnecessary (occurrent) + + + + + A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable. + PATO:GVG + + + + + + + + + + + true + + + + + + + + + + + true + + + + + + + + + + + true + + + + + + + + + A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build. + quality + PATO:0001643 + + stubby + + + + + A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + + true + + + + + + + + + A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary into the surface or boundary of another entity. + quality + PATO:0001645 + + + protruding into + + + + + A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary into the surface or boundary of another entity. + PATOC:nc + + + + + + + + + A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary and outwards in relation to the physical space occupied by another entity. + extruding from + quality + exits through + exposed + PATO:0001646 + + + protruding out of + + + + + A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary and outwards in relation to the physical space occupied by another entity. + PATOC:nc + + + + + + + + + + + true + + + + + + + + + An 1-D extent quality which is equal to the length of the closed curve of a circle. + quality + PATO:0001648 + + + circumference + + + + + An 1-D extent quality which is equal to the length of the closed curve of a circle. + WordNet:WordNet + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the side. + quality + PATO:0001649 + + curved lateral + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the side. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A resistance to a stimulus which is relatively high. + + high resistance to + increased resistance + quality + PATO:0001650 + + + + increased resistance to + + + + + A resistance to a stimulus which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A resistance to a stimulus which is relatively low. + + decreased resistance + low resistance to + quality + PATO:0001651 + + + + decreased resistance to + + + + + A resistance to a stimulus which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's spatial positioning with respect to an additional entity. + quality + PATO:0001652 + + + alignment + + + + + A spatial quality inhering in a bearer by virtue of the bearer's spatial positioning with respect to an additional entity. + PATOC:GVG + + + + + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity. + + aligned + quality + aligned to + PATO:0001653 + + + aligned with + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity. + PATO:GVG + + + + + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity. + + misaligned + unaligned with + quality + PATO:0001654 + + + misaligned with + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity. + PATOC:GVG + + + + + + + + + A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per liter of solution. + quality + PATO:0001655 + + + + osmolarity + + + + + A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per liter of solution. + Wikipedia:http://en.wikipedia.org/wiki/Osmolarity + + + + + + + + + + + + + + + + + + + + + A osmolarity which is relatively low. + + low osmolarity + quality + PATO:0001656 + + + decreased osmolarity + + + + + A osmolarity which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A osmolarity which is relatively high. + + high osmolarity + quality + PATO:0001657 + + + increased osmolarity + + + + + A osmolarity which is relatively high. + PATOC:GVG + + + + + + + + + A rotatiotion quality inhering in a bearer by virtue of being rotated towards the back or upper surface of an organism. + quality + PATO:0001658 + + + dorsally rotated + + + + + A rotatiotion quality inhering in a bearer by virtue of being rotated towards the back or upper surface of an organism. + PATOC:GVG + + + + + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the abdomen of an organism. + quality + PATO:0001659 + + + + ventrally rotated + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the abdomen of an organism. + PATOC:GVG + + + + + + + + + An action potential which is relatively low. + low action potential + quality + PATO:0001660 + + obsolete decreased action potential + true + + + + + An action potential which is relatively low. + PATOC:GVG + + + + + + + + + An action potential which is relatively high. + high action potential + quality + PATO:0001661 + + obsolete increased action potential + true + + + + + An action potential which is relatively high. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to being damaged or destroyed. + quality + PATO:0001662 + + + + fragility + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to being damaged or destroyed. + WordNet:WordNet + + + + + + + + + + + + + + + + + + + + + A solubility which is relatively high. + + high solubility + quality + PATO:0001663 + + + + increased solubility + + + + + A solubility which is relatively high. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A solubility which is relatively low. + + low solubility + quality + PATO:0001664 + + + + decreased solubility + + + + + A solubility which is relatively low. + PATO:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being located near a surface. + PATO:0001471 + superficial to + quality + PATO:0001665 + + + + superficial + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being located near a surface. + Dictionary.com:Dictionary.com + + + + + + + + + + + true + + + + + + + + + An attachment quality inhering in a bearer by virtue of the bearer's connection or association with another entity. + attached + quality + affixed to + PATO:0001667 + + + + attached to + + + + + An attachment quality inhering in a bearer by virtue of the bearer's connection or association with another entity. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being in close proximity and physically interacting with another entity. + associated + quality + PATO:0001668 + + + + associated with + + + + + A structural quality inhering in a bearer by virtue of the bearer's being in close proximity and physically interacting with another entity. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A susceptibility toward an external stimulus which is higher than normal/average. + + high susceptibility toward + increased susceptibility + quality + PATO:0001669 + + + + increased susceptibility toward + + + + + A susceptibility toward an external stimulus which is higher than normal/average. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A susceptibility toward an external stimulus which is lower than normal/average. + + decreased susceptibility + low susceptibility toward + quality + PATO:0001670 + + + + decreased susceptibility toward + + + + + A susceptibility toward an external stimulus which is lower than normal/average. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A distribution which is relatively high. + + high distribution + quality + PATO:0001671 + + increased distribution + + + + + A distribution which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A distribution which is relatively low. + + low distribution + quality + PATO:0001672 + + decreased distribution + + + + + A distribution which is relatively low. + PATOC:GVG + + + + + + + + + Structure quality that is the presence of closed epithelium bounded capsules containing one or more liquid or solid organism substances. + cysts + quality + PATO:0001673 + + Cystic is an abnormal condition. + cystic + + + + + Structure quality that is the presence of closed epithelium bounded capsules containing one or more liquid or solid organism substances. + PATOC:MAH + + + + + + + + + A concentration quality inhering in a bearer by virtue of the bearer's catalytic activity divided by the volume of the system. + quality + PATO:0001674 + + + + catalytic (activity) concentration + + + + + A concentration quality inhering in a bearer by virtue of the bearer's catalytic activity divided by the volume of the system. + IUPAC:IUPAC + + + + + + + + + + + + + + + + + + + + + An efficiency which is relatively low. + + low efficiency + quality + PATO:0001675 + + decreased efficiency + + + + + An efficiency which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An efficiency which is relatively high. + + high efficiency + quality + PATO:0001676 + + increased efficiency + + + + + An efficiency which is relatively high. + PATOC:GVG + + + + + + + + + + An efficiency quality inhering in a bearer by virtue of the bearer's lacking efficiency. + + quality + PATO:0001677 + + inefficient + + + + + An efficiency quality inhering in a bearer by virtue of the bearer's lacking efficiency. + PATOC:GVG + + + + + + + + + An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency. + + quality + PATO:0001678 + + efficient + + + + + An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency. + PATOC:GVG + + + + + + + + + A volume quality inhering in a mass of substance by virtue of the amount of 3-dimensional space it occupies. + quality + PATO:0001679 + + + The reciprocal of density. + specific volume + + + + + A volume quality inhering in a mass of substance by virtue of the amount of 3-dimensional space it occupies. + Wikipedia:http://en.wikipedia.org/wiki/Specific_volume + + + + + + + + + A volume quality inhering in a homogeneous substance containing 6.02 x 1023 atoms or molecules by virtue of the amount of 3-dimensional space it occupies. + quality + PATO:0001680 + + + molar volume + + + + + A volume quality inhering in a homogeneous substance containing 6.02 x 1023 atoms or molecules by virtue of the amount of 3-dimensional space it occupies. + Wikipedia:http://en.wikipedia.org/wiki/Molar_volume + + + + + + + + + A physical quality that inheres in a homogeneous substance containing 6.02 x 1023 atoms or molecules. + quality + PATO:0001681 + + + molar mass + + + + + A physical quality that inheres in a homogeneous substance containing 6.02 x 1023 atoms or molecules. + Wikipedia:http://en.wikipedia.org/wiki/Molar_mass + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to exert an attractive or repulsive force on other entities. + quality + PATO:0001682 + + + + magnetism + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to exert an attractive or repulsive force on other entities. + Wikipedia:http://en.wikipedia.org/wiki/Magnetism + + + + + + + + + + + + + + + + + + + + + A magnetism which is relatively high. + + high magnetism + quality + PATO:0001683 + + + increased magnetism + + + + + A magnetism which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A magnetism which is relatively low. + + low magnetism + quality + PATO:0001684 + + + decreased magnetism + + + + + A magnetism which is relatively low. + PATOC:GVG + + + + + + + + + + A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism. + + quality + PATO:0001685 + + + magnetic + + + + + A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism. + PATOC:GVG + + + + + + + + + A magnetic quality inhering in a bearer by virtue of the bearer's inability to exert magnitism. + + quality + PATO:0001686 + + + non-magnetic + + + + + A magnetic quality inhering in a bearer by virtue of the bearer's inability to exert magnitism. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface. + quality + PATO:0001687 + + elevation + + + + + A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface. + Trailillustrated:Trailillustrated + + + + + + + + + + + + + + + + + + + + + An elevation which is relatively high. + + high elevation + quality + elevated + PATO:0001688 + + increased elevation + + + + + An elevation which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An elevation which is relatively low. + + low elevation + quality + PATO:0001689 + + decreased elevation + + + + + An elevation which is relatively low. + PATOC:GVG + + + + + + + + + + A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted. + + quality + PATO:0001690 + + + This refers to the disposition of the bearer. + contractile + + + + + A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted. + PATOC:GVG + + + + + + + + + A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted. + + quality + PATO:0001691 + + + This refers to the disposition of the bearer. + non-contractile + + + + + A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + + + + + + + + + + + + + A viscosity which relatively high. + + high viscosity + quality + PATO:0001693 + + + increased viscosity + + + + + A viscosity which relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A viscosity which relatively low. + + low viscosity + quality + PATO:0001694 + + + decreased viscosity + + + + + A viscosity which relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A fecundity which is relatively high. + + high fecundity + quality + PATO:0001695 + + + increased fecundity + + + + + A fecundity which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A fecundity which is relatively low. + + low fecundity + quality + PATO:0001696 + + + decreased fecundity + + + + + A fecundity which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A photosensitivity which is relatively low. + + low photosensitivity + quality + PATO:0001697 + + + + decreased photosensitivity + + + + + A photosensitivity which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A photosensitivity which is relatively high. + + high photosensitivity + quality + PATO:0001698 + + + + increased photosensitivity + + + + + A photosensitivity which is relatively high. + PATOC:GVG + + + + + + + + + A sleep pattern which has regular start and/or end times. + + quality + PATO:0001699 + + regular sleep pattern + + + + + A sleep pattern which has regular start and/or end times. + PATOC:GVG + + + + + + + + + A sleep pattern which has irregular start and/or end times. + + quality + PATO:0001700 + + irregular sleep pattern + + + + + A sleep pattern which has irregular start and/or end times. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development. + + quality + PATO:0001701 + + mature + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development. + Merriam-Webster:Merriam-Webster + + + + + + + + + A color consisting of violet hue and high saturation. + quality + bright violet + PATO:0001702 + + saturated violet + + + + + A color consisting of violet hue and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of violet hue and low saturation. + pale violet + quality + PATO:0001703 + + desaturated violet + + + + + A color consisting of violet hue and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of violet hue and high brightness. + quality + PATO:0001704 + + + light violet + + + + + A color consisting of violet hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of violet hue and low brightness. + quality + PATO:0001705 + + + dark violet + + + + + A color consisting of violet hue and low brightness. + PATOC:GVG + + + + + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's disposition to lack activity. + + quality + PATO:0001706 + + + behavioural inactive + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's disposition to lack activity. + PATOC:GVG + + + + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity. + + quality + PATO:0001707 + + behavioural active + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity. + PATOC:GVG + + + + + + + + + A size quality inhering in an bearer by virtue of the bearer's extension in one dimension. + 1-D size + quality + PATO:0001708 + + 1-D extent + + + + + A size quality inhering in an bearer by virtue of the bearer's extension in one dimension. + PATOC:GVG + + + + + + + + + A size quality inhering in an bearer by virtue of the bearer's extension in two dimensions. + 2-D size + quality + PATO:0001709 + + 2-D extent + + + + + A size quality inhering in an bearer by virtue of the bearer's extension in two dimensions. + PATOC:GVG + + + + + + + + + A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions. + 3D size + quality + PATO:0001710 + + 3-D extent + + + + + A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions. + PATOC:GVG + + + + + + + + + An 1-D extent quality inhering in two-dimensional bearer by virtue of being equal to the distance around it. + quality + PATO:0001711 + + + perimeter + + + + + An 1-D extent quality inhering in two-dimensional bearer by virtue of being equal to the distance around it. + Wikipedia:http://en.wikipedia.org/wiki/Perimeter + + + + + + + + + + + + + + + + + + + + + A perimeter which is relatively high. + + quality + PATO:0001712 + + increased perimeter + + + + + A perimeter which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A perimeter which is relatively low. + + quality + PATO:0001713 + + decreased perimeter + + + + + A perimeter which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A diameter which is relatively large. + + quality + PATO:0001714 + + increased diameter + + + + + A diameter which is relatively large. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A diameter which is relatively small. + + quality + PATO:0001715 + + decreased diameter + + + + + A diameter which is relatively small. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking. + + quality + resilient + strong + tough + PATO:0001716 + + + non-fragile + + + + + A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A radiation emitting quality which obtains by the intensity of the bearer emitted radiation. + quality + PATO:0001717 + radiation emitting intensity quality + + + + + A radiation emitting quality which obtains by the intensity of the bearer emitted radiation. + PATOC:GVG + + + + + + + + + A quality that exists by virtue of the luminous intensity per unit area projected in a given direction. + quality + PATO:0001718 + luminance + + + + + A quality that exists by virtue of the luminous intensity per unit area projected in a given direction. + Wikipedia:http://en.wikipedia.org/wiki/Luminance + + + + + + + + + A behavioral quality which holds by virtue of whether the bearer exhibits the ability to receive another agentitive entity. + quality + PATO:0001719 + + + + receptivity + + + + + A behavioral quality which holds by virtue of whether the bearer exhibits the ability to receive another agentitive entity. + PATOC:cjm + + + + + + + + + A behavioral quality which holds by virtue of extent of the receptiveness of a female to male advances. + quality + PATO:0001720 + + + + female receptivity + + + + + A behavioral quality which holds by virtue of extent of the receptiveness of a female to male advances. + GO:GO + + + + + + + + + A behavioral quality which holds by virtue of extent of the receptiveness of a male to female advances. + quality + PATO:0001721 + + + + male receptivity + + + + + A behavioral quality which holds by virtue of extent of the receptiveness of a male to female advances. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + + + + + + + + + + + + + A female receptivity which is relatively high. + + high female receptivity + quality + PATO:0001723 + + + increased female receptivity + + + + + A female receptivity which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A female receptivity which is relatively low. + + low female receptivity + quality + PATO:0001724 + + + decreased female receptivity + + + + + A female receptivity which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A male receptivity which is relatively high. + + high male receptivity + quality + PATO:0001725 + + + increased male receptivity + + + + + A male receptivity which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A male receptivity which is relatively low. + + low male receptivity + quality + PATO:0001726 + + + decreased male receptivity + + + + + A male receptivity which is relatively low. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's prevailing tendency, mood, or inclination. + quality + tendency + PATO:0001727 + + + + disposition + + + + + A quality inhering in a bearer by virtue of the bearer's prevailing tendency, mood, or inclination. + Merriam-Webster:Merriam-Webster + + + + + + + + + A disposition inhering in a multi-cellular organism. + quality + PATO:0001728 + + + multi-cellular organismal disposition + + + + + A disposition inhering in a multi-cellular organism. + PATOC:GVG + + + + + + + + + An organismal quality inhering in a bearer by virtue of the bearer's disposition to lose an entitity by natural process. + quality + PATO:0001729 + + + + shedability + + + + + An organismal quality inhering in a bearer by virtue of the bearer's disposition to lose an entitity by natural process. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to shed body parts. + quality + PATO:0001730 + + + + deciduous (generic) + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to shed body parts. + PATOC:GVG + + + + + + + + + A quality inhering in a plant by virtue of the bearer's disposition to shed foliage. + quality + PATO:0001731 + + + + deciduous (plant) + + + + + A quality inhering in a plant by virtue of the bearer's disposition to shed foliage. + PATOC:cjm + + + + + + + + + A quality inhering in a plant by virtue of the bearer's disposition to not shed any body part. + quality + PATO:0001732 + + + + non-deciduous (any body part) + + + + + A quality inhering in a plant by virtue of the bearer's disposition to not shed any body part. + PATOC:GVG + + + + + + + + + A quality inhering in a plant by virtue of the bearer's disposition to retain foliage. + quality + PATO:0001733 + + + + evergreen (plant) + + + + + A quality inhering in a plant by virtue of the bearer's disposition to retain foliage. + PATOC:GVG + + + + + + + + + A quality inhering in a plant by virtue of the bearer's disposition to being between evergeen and deciduous. + quality + PATO:0001734 + + + + semi-deciduous(plant) + + + + + A quality inhering in a plant by virtue of the bearer's disposition to being between evergeen and deciduous. + PATOC:cjm + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of liquids. + liquid + quality + PATO:0001735 + liquid configuration + + + + + A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of liquids. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of solids. + solid + quality + PATO:0001736 + + solid configuration + + + + + A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of solids. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of gases. + gas + quality + PATO:0001737 + gaseus configuration + + + + + A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of gases. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking physically interaction with another entity. + dissociated + quality + PATO:0001738 + + + dissociated from + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking physically interaction with another entity. + PATOC:GVG + + + + + + + + + A quality that inheres in an bearer by virtue of how that bearer interacts with radiation. + quality + PATO:0001739 + + radiation quality + + + + + A quality that inheres in an bearer by virtue of how that bearer interacts with radiation. + PATOC:GVG + + + + + + + + + A radiation quality inhering in a radioactive substance by virtue of its transformation (disintegration) rate. + radioactivity + quality + PATO:0001740 + + activity (of a radionuclide) + + + + + A radiation quality inhering in a radioactive substance by virtue of its transformation (disintegration) rate. + PATOC:GVG + + + + + + + + + A radiation quality inhering in bearer by virtue of the bearer's exhibiting or being caused by radioactivity. + quality + PATO:0001741 + + radioactive + + + + + A radiation quality inhering in bearer by virtue of the bearer's exhibiting or being caused by radioactivity. + WordNet:WordNet + + + + + + + + + + + + + + + + + + + + + A radioactivity which is relatively low. + + high radioactivity + quality + PATO:0001742 + + increased radioactivity + + + + + A radioactivity which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A radioactivity which is relatively high. + + low radioactivity + quality + PATO:0001743 + + decreased radioactivity + + + + + A radioactivity which is relatively high. + PATOC:GVG + + + + + + + + + A radiation quality inhering in a bearer by virtue of what the bearer receives as a result of being exposed to ionizing radiation. + quality + PATO:0001744 + + + radiation exposure + + + + + A radiation quality inhering in a bearer by virtue of what the bearer receives as a result of being exposed to ionizing radiation. + hps:hps + + + + + + + + + A radiation exposure quality inhering in a substance by virtue of the radiation energy "deposited" in a kilogram of a substance. + quality + PATO:0001745 + + + radiation absorbed dose + + + + + A radiation exposure quality inhering in a substance by virtue of the radiation energy "deposited" in a kilogram of a substance. + arpansa:arpansa + + + + + + + + + A radiation exposure quality inhering in a tissue by virtue of the relation between the absorbed dose to the effective biological damage of the radiation to that tissue. + quality + PATO:0001746 + + + radiation equivalent dose + + + + + A radiation exposure quality inhering in a tissue by virtue of the relation between the absorbed dose to the effective biological damage of the radiation to that tissue. + arpansa:arpansa + + + + + + + + + A radiation exposure quality inhering in an organ by virtue of the multiplication of an equivalent dose to that organ multiplied by the tissue weighting factor for that organ. + quality + PATO:0001747 + + + radiation effective dose + + + + + A radiation exposure quality inhering in an organ by virtue of the multiplication of an equivalent dose to that organ multiplied by the tissue weighting factor for that organ. + arpansa:arpansa + + + + + + + + + A shape quality in which a portion of the outermost boundary of an entity folds in space such that a portion that was originally convex is now concave. + quality + PATO:0001748 + + + + invaginated + + + + + A shape quality in which a portion of the outermost boundary of an entity folds in space such that a portion that was originally convex is now concave. + PATOC:GVG + + + + + + + + + A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth. + + hypoplastic growth + pedomorphic growth + quality + PATO:0001749 + + paedomorphic growth + + + + + A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth. + PATOC:mh + + + + + + + + + A paedomorphic growth quality which is due to a delayed onset. + quality + PATO:0001750 + + postdisplaced growth + + + + + A paedomorphic growth quality which is due to a delayed onset. + PATOC:mh + + + + + + + + + A paedomorphic growth quality which is due to an ealier offset. + quality + PATO:0001751 + + progenetic growth + + + + + A paedomorphic growth quality which is due to an ealier offset. + PATOC:mh + + + + + + + + + A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth. + + hyperplastic growth + quality + PATO:0001752 + + peramorphic growth + + + + + A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth. + PATOC:mh + + + + + + + + + A peramorphic growth quality which is due to an increased rate. + quality + PATO:0001753 + + accelerated growth + + + + + A peramorphic growth quality which is due to an increased rate. + PATOC:mh + + + + + + + + + A peramorphic growth quality which is due to an earlier onset. + precocious growth + quality + PATO:0001754 + + predisplaced growth + + + + + A peramorphic growth quality which is due to an earlier onset. + PATOC:mh + + + + + + + + + A peramorphic growth quality which is due to a delayed offset. + quality + PATO:0001755 + + hypermorphic growth + + + + + A peramorphic growth quality which is due to a delayed offset. + PATOC:mh + + + + + + + + + A conductivity quality inhering in a bearer by virtue of the bearer's disposition to spontaneous transfer of thermal energy from a region of higher temperature to a region of lower temperature. + thermal conduction + quality + PATO:0001756 + + + + heat conductivity + + + + + A conductivity quality inhering in a bearer by virtue of the bearer's disposition to spontaneous transfer of thermal energy from a region of higher temperature to a region of lower temperature. + Wikipedia:http://en.wikipedia.org/wiki/Heat_conduction + + + + + + + + + A conductivity quality inhering in a bearer by virtue of the bearer's ability to convey electricity. + quality + PATO:0001757 + + + + electrical conductivity + + + + + A conductivity quality inhering in a bearer by virtue of the bearer's ability to convey electricity. + Wikipedia:http://en.wikipedia.org/wiki/Electrical_conduction + + + + + + + + + A conductivity quality inhering in motor and sensory nerves by virtue of the bearer's ability to convey electricity. + quality + PATO:0001758 + + + + nerve conductivity + + + + + A conductivity quality inhering in motor and sensory nerves by virtue of the bearer's ability to convey electricity. + PATOC:GVG + + + + + + + + + A composition quality inhering in a bearer by virtue of the bearer's containing granules. + quality + PATO:0001759 + + + granular + + + + + A composition quality inhering in a bearer by virtue of the bearer's containing granules. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + quality + PATO:0001760 + + + female semi-fertile + + + + + + + + + + quality + PATO:0001761 + + + male semi-fertile + + + + + + + + + + quality + PATO:0001762 + + + male semi-sterile + + + + + + + + + + quality + PATO:0001763 + + + female semi-sterile + + + + + + + + + + + + + + + + + + + + + An age which is high relative to the normal or average. + + high age + quality + PATO:0001764 + + increased age + + + + + An age which is high relative to the normal or average. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An age which is low relative to the normal or average. + + low age + quality + PATO:0001765 + + decreased age + + + + + An age which is low relative to the normal or average. + PATOC:GVG + + + + + + + + + A cellular quality inhering in a cell by virtue of its anisotropic intracellular organization. + PATO:0001769 + quality + PATO:0001766 + + + obsolete cellular polarity + true + + + + + A cellular quality inhering in a cell by virtue of its anisotropic intracellular organization. + PATOC:GVG + + + + + + + + + quality + PATO:0001767 + + + semi-fertile + + + + + + + + + A viability quality inhering in a bearer or a population by virtue of some of it's members' inability to survive to reproduce. + quality + PATO:0001768 + + + semi-lethal (sensu genetics) + + + + + A viability quality inhering in a bearer or a population by virtue of some of it's members' inability to survive to reproduce. + PATOC:CVC + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an axis. + quality + cellular polarity + PATO:0001769 + + positional polarity + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an axis. + PATOC:MAH + + + + + cellular polarity + PATOC:MAH + + + + + + + + + A viability quality inhering in a population by virtue of some of it's members' ability to survive. + quality + PATO:0001770 + + + semi-viable + + + + + A viability quality inhering in a population by virtue of some of it's members' ability to survive. + PATOC:CVC + + + + + + + + + + + true + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being extended on all sides of another entity simultaneously. + encircling + enclosing + wrapping + quality + PATO:0001772 + + + Nedd to add reciprocal of relationship to 'surrounded by' PATO:0005016. + surrounding + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being extended on all sides of another entity simultaneously. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having only one phase or stage. + quality + PATO:0001773 + + monophasic + + + + + A quality inhering in a bearer by virtue of the bearer's having only one phase or stage. + hefreedictionary.com:hefreedictionary.com + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having or existing in many phases. + quality + PATO:0001774 + + polyphasic + + + + + A quality inhering in a bearer by virtue of the bearer's having or existing in many phases. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the dorsal-ventral axis. + quality + PATO:0001775 + + dorsal-ventral polarity + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the dorsal-ventral axis. + PATOC:MAH + + + + + + + + + + + + + + + + + + + + + A flexibility which is relatively high. + + high flexibility + quality + PATO:0001776 + + + increased flexibility + + + + + A flexibility which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A flexibility which is relatively low. + + low flexibility + quality + PATO:0001777 + + + decreased flexibility + + + + + A flexibility which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A strength which is relatively high. + + high strength + quality + PATO:0001778 + + increased strength + + + + + A strength which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A strength which is relatively low. + + weak + quality + PATO:0001779 + + decreased strength + + + + + A strength which is relatively low. + PATOC:GVG + + + + + + + + + A size quality inhering in a bearer by virtue of the bearer's being abnormally developed, usually due to malnutrition. + dystrophied + quality + dystrophy + PATO:0001780 + + + dystrophic + + + + + A size quality inhering in a bearer by virtue of the bearer's being abnormally developed, usually due to malnutrition. + Wiikipedia:Wiikipedia + + + + + + + + + A thickness quality which lacks pattern. + quality + PATO:0001781 + irregular thickness + + + + + A thickness quality which lacks pattern. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An intensity which is relatively high. + + high intensity + quality + PATO:0001782 + + increased intensity + + + + + An intensity which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An intensity which is relatively low. + + low intensity + quality + PATO:0001783 + + decreased intensity + + + + + An intensity which is relatively low. + PATOC:GVG + + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's being divided into two branches. + PATO:0001572 + bifid + quality + forked + PATO:0001784 + + + + bifurcated + + + + + A branched quality inhering in a bearer by virtue of the bearer's being divided into two branches. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outward. + flared + quality + PATO:0001785 + + + TODO: obsolete, definition too ambiguous. + splayed + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outward. + PATOC:GVG + + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions. + clefted + septate + quality + divided + forked + subdivided + PATO:0001786 + + + split + + + + + A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions. + die.net:die.net + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis. + quality + PATO:0001787 + + rotational curvature + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A density which is higher relative to the normal or average. + + high density + quality + PATO:0001788 + + increased mass density + + + + + A density which is higher relative to the normal or average. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's having a shape resembling a dome. + quality + PATO:0001789 + + + + domed + + + + + A curvature quality inhering in a bearer by virtue of the bearer's having a shape resembling a dome. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A density which is lower relative to the normal or average. + + low density + quality + PATO:0001790 + + decreased mass density + + + + + A density which is lower relative to the normal or average. + PATOC:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being confined or restricted to multiple locations. + multi-focal + quality + PATO:0001791 + + + multi-localised + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being confined or restricted to multiple locations. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located on left side of from the a another entity. + quality + PATO:0001792 + + + + left side of + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located on left side of from the a another entity. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located on right side of a another entity. + quality + PATO:0001793 + + + + right side of + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located on right side of a another entity. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being wound in a continuous series of loops. + quality + PATO:0001794 + + coiling + + + + + A shape quality inhering in a bearer by virtue of the bearer's being wound in a continuous series of loops. + Online_Dictionary:Online_Dictionary + + + + + + + + + + + + + + + + + + + + + A coiling which is relatively high. + + high coiling + quality + PATO:0001795 + + + increased coiling + + + + + A coiling which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A coiling which is relatively low. + + low coiling + quality + PATO:0001796 + + + decreased coiling + + + + + A coiling which is relatively low. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length. + quality + tightly curled + twisted + PATO:0001798 + + + kinked + + + + + A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's exhibiting disturbance of its smoothness or regularity. + quality + PATO:0001799 + + + ruffled + + + + + A shape quality inhering in a bearer by virtue of the bearer's exhibiting disturbance of its smoothness or regularity. + .thefreedictionary.com:.thefreedictionary.com + + + + + + + + + A composition quality inhering in an bearer by virtue of the quantities or relative ratios of water of the inhering entity. + quality + PATO:0001800 + + + water composition + + + + + A composition quality inhering in an bearer by virtue of the quantities or relative ratios of water of the inhering entity. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A composition quality inhering in an bearer by virtue of the reduction in amount of water the bearer contains. + dehydrated + quality + dry + PATO:0001801 + + decreased water composition + + + + + A composition quality inhering in an bearer by virtue of the reduction in amount of water the bearer contains. + Wikipedia:http://en.wikipedia.org/wiki/Dehydrated + + + + + + + + + A pattern quality inhering in a bearer by virtue of the bearer's not being compact or dense in arrangement. + quality + PATO:0001802 + + loose + + + + + A pattern quality inhering in a bearer by virtue of the bearer's not being compact or dense in arrangement. + answers.com:answers.com + + + + + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's disposition to being susceptible to damage by light. + quality + PATO:0001803 + + + phototoxic + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's disposition to being susceptible to damage by light. + answers.com:answers.com + + + + + + + + + A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with scales. + quality + squamous + PATO:0001804 + + + scaly + + + + + A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with scales. + answers.com:answers.com + + + + + + + + + A texture quality inhering in a bearer by virtue of the bearer's formed or tending to form flakes or thin, crisp fragments. + quality + PATO:0001805 + + + flaky + + + + + A texture quality inhering in a bearer by virtue of the bearer's formed or tending to form flakes or thin, crisp fragments. + answers.com:answers.com + + + + + + + + + A sensitivity quality inhering in a bearer by virtue of the bearer's exposure to radiation. + quality + PATO:0001806 + + + + sensitivity to irradiation + + + + + A sensitivity quality inhering in a bearer by virtue of the bearer's exposure to radiation. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A sensitivity to irradiation which is relatively low. + + low sensitivity to irradiation + quality + PATO:0001807 + + + decreased sensitivity to irradiation + + + + + A sensitivity to irradiation which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A sensitivity to irradiation which is relatively high. + + high sensitivity to irradiation + quality + PATO:0001808 + + + increased sensitivity to irradiation + + + + + A sensitivity to irradiation which is relatively high. + PATOC:GVG + + + + + + + + + A pattern quality inhering in a bearer by virtue of the bearer's being compact or dense in arrangement. + quality + PATO:0001809 + + tight + + + + + A pattern quality inhering in a bearer by virtue of the bearer's being compact or dense in arrangement. + PATOC:GVG + + + + + + + + + A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by one or more creases in a normally smooth surface. + quality + PATO:0001810 + + + wrinkled + + + + + A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by one or more creases in a normally smooth surface. + url:http://www.thefreedictionary.com/wrinkled + + + + + + + + + A relaxation which is relatively high. + high relaxation + quality + PATO:0001811 + + GO has now relevant relation terms which should be used instead. + obsolete increased relaxation + true + + + + + A relaxation which is relatively high. + PATOC:GVG + + + + + + + + + A relaxation which is relatively low. + low relaxation + quality + PATO:0001812 + + GO has now relevant relation terms which should be used instead. + obsolete decreased relaxation + true + + + + + A relaxation which is relatively low. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lack elastic tension that facilitate response to stimuli. + quality + PATO:0001813 + + + atonicity + + + + + A structural quality inhering in a bearer by virtue of the bearer's lack elastic tension that facilitate response to stimuli. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's impaired elastic tension that facilitate response to stimuli. + quality + PATO:0001814 + + + dystonicity + + + + + A structural quality inhering in a bearer by virtue of the bearer's impaired elastic tension that facilitate response to stimuli. + PATOC:GVG + + + + + + + + + A strength quality inhering in a bearer by virtue of the bearer's disposition to lose strength. + quality + PATO:0001815 + + + + fatigability + + + + + A strength quality inhering in a bearer by virtue of the bearer's disposition to lose strength. + WordNet:WordNet + + + + + + + + + + A fatigability which is relatively high. + + high fatigability + quality + PATO:0001816 + + + increased fatigability + + + + + A fatigability which is relatively high. + PATOC:GVG + + + + + + + + + + A fatigability which is relatively low. + + low fatigability + quality + PATO:0001817 + + + decreased fatigability + + + + + A fatigability which is relatively low. + PATOC:GVG + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time. + + quality + PATO:0001818 + + + + progressive + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time. + PATOC:GVG + + + + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's absence or closure of a normal body orifice or tubular passage. + atresia + quality + PATO:0001819 + + + atretic + + + + + A morphological quality inhering in a bearer by virtue of the bearer's absence or closure of a normal body orifice or tubular passage. + answers.com:answers.com + + + + + + + + + + + true + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having no opening. + + unperforated + quality + PATO:0001821 + + + imperforate + + + + + A structural quality inhering in a bearer by virtue of the bearer's having no opening. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A quality inhering in a bearer by virtue of whether the bearer's being covered by a liquid. + quality + PATO:0001822 + + + + wetness + + + + + A quality inhering in a bearer by virtue of whether the bearer's being covered by a liquid. + wordreference.com:wordreference.com + + + + + + + + + + A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid. + + quality + PATO:0001823 + + + wet + + + + + A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid. + PATOC:GVG + + + + + + + + + A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid. + + quality + PATO:0001824 + + + dry + + + + + A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A wetness quality that is relatively high. + + quality + PATO:0001825 + + increased wetness + + + + + A wetness quality that is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A wetness quality that is relatively low. + + low wetness + quality + PATO:0001826 + + decreased wetness + + + + + A wetness quality that is relatively low. + PATOC:GVG + + + + + + + + + A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of one sex and external sexual characteristics of the other sex. + quality + PATO:0001827 + + pseudohermaphrodite + + + + + A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of one sex and external sexual characteristics of the other sex. + WordNet:WordNet + + + + + + + + + A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of male and external sexual characteristics of female. + quality + PATO:0001828 + + male pseudohermaphrodite + + + + + A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of male and external sexual characteristics of female. + PATOC:GVG + + + + + + + + + A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of female and external sexual characteristics of male. + quality + PATO:0001829 + + female pseudohermaphrodite + + + + + A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of female and external sexual characteristics of male. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A female fertility which is relatively low. + + low female fertility + quality + PATO:0001830 + + + decreased female fertility + + + + + A female fertility which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A female fertility which is relatively high. + + high female fertility + quality + PATO:0001831 + + + increased female fertility + + + + + A female fertility which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A male fertility which is relatively high. + + high male fertility + quality + PATO:0001832 + + + increased male fertility + + + + + A male fertility which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A male fertility which is relatively low. + + low male fertility + quality + PATO:0001833 + + + decreased male fertility + + + + + A male fertility which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A fertility which is relatively low. + + low fertility + quality + PATO:0001834 + + + decreased fertility + + + + + A fertility which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A fertility which is relatively high. + + high fertility + quality + PATO:0001835 + + + increased fertility + + + + + A fertility which is relatively high. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer with some kind of aperture or opening that is blocked or clogged. + quality + PATO:0001836 + + + congested + + + + + A structural quality inhering in a bearer with some kind of aperture or opening that is blocked or clogged. + answers.com:answers.com + + + + + + + + + + + true + + + + + + + + + + + + + + + + + + + + + A flow that is relatively low. + + low flow + quality + PATO:0001838 + + decreased fluid flow + + + + + A flow that is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A fluid flow that is relatively high. + + high flow + quality + PATO:0001839 + + increased fluid flow + + + + + A fluid flow that is relatively high. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + An intensity which is characterized by temporary abatement in severity. + quality + PATO:0001841 + + + + remittent intensity + + + + + An intensity which is characterized by temporary abatement in severity. + answers.com:answers.com + + + + + + + + + A concentration quality inhering in a bearer by virtue of the bearer's containing acid (hydrogen ions). + pH + quality + PATO:0001842 + + + acidity + + + + + A concentration quality inhering in a bearer by virtue of the bearer's containing acid (hydrogen ions). + biology-online:biology-online + + + + + + + + + + + + + + + + + + + + + An acidity which is relatively low. + + low acidity + quality + PATO:0001843 + + decreased acidity + + + + + An acidity which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An acidity which is relatively high. + + high acidity + quality + PATO:0001844 + + increased acidity + + + + + An acidity which is relatively high. + PATOC:GVG + + + + + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm lacking pattern. + quality + PATO:0001845 + + irregular rhythm + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm lacking pattern. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel. + quality + PATO:0001846 + + + tangled + + + + + A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel. + answers.com:answers.com + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically. + PATO:0001837 + stenosis + stenotic + stricture + quality + PATO:0001847 + + constricted + + + + + A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically. + WordNet:WordNet + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved asymmetrically. + quality + PATO:0001848 + + + asymmetrically curved + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved asymmetrically. + PATOC:GVG + + + + + + + + + A texture quality inhering in a bearer by virtue of a portion of the bearer's surface being scraped away. + quality + PATO:0001849 + + abrased + + + + + A texture quality inhering in a bearer by virtue of a portion of the bearer's surface being scraped away. + answers.com:answers.com + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being fibrous tissue that replaces normal tissue destroyed by injury or disease. + quality + PATO:0001850 + + + scarred + + + + + A structural quality inhering in a bearer by virtue of the bearer's being fibrous tissue that replaces normal tissue destroyed by injury or disease. + answers.com:answers.com + + + + + + + + + + + + + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's exhibiting transient abnormal enlargement, not due to cell proliferation. + swelling + quality + PATO:0001851 + + + swollen + + + + + A structure quality inhering in a bearer by virtue of the bearer's exhibiting transient abnormal enlargement, not due to cell proliferation. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position. + PATO:0001479 + PATO:0002158 + PATO:0002159 + dislocation + luxated + luxation + relational dislocated quality + quality + PATO:0001852 + + + dislocated + + + + + A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of cerebral spinal fluid. + quality + PATO:0001853 + + hydrocephalic + + + + + A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of cerebral spinal fluid. + PATOC:mh + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being situated at right angles to the horizon. + quality + PATO:0001854 + + vertical + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being situated at right angles to the horizon. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being in the plane of the horizon. + quality + PATO:0001855 + + horizontal + + + + + A positional quality inhering in a bearer by virtue of the bearer's being in the plane of the horizon. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being turned inward upon itself. + quality + PATO:0001856 + + For example, a tubular organ or part. + introverted + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being turned inward upon itself. + die.net:die.net + + + + + + + + + A shape quality in a bearer by virtue of the bearer's curving inward. + + quality + PATO:0001857 + + + concave + + + + + A shape quality in a bearer by virtue of the bearer's curving inward. + WordNet:WordNet + + + + + + + + + A functionality quality inhering in a bearer by virtue of being not completely paralysed. + quality + PATO:0001858 + + partially paralysed + + + + + A functionality quality inhering in a bearer by virtue of being not completely paralysed. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A coordination which is relatively high. + + high coordination + quality + PATO:0001859 + + + increased coordination + + + + + A coordination which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A coordination which is relatively low. + + low coordination + quality + PATO:0001860 + + + decreased coordination + + + + + A coordination which is relatively low. + PATOC:GVG + + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve. + + fascicled + quality + PATO:0001861 + + + fasciculated + + + + + A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve. + answers.com:answers.com + + + + + + + + + A fertility quality inhering in a bearer by virtue of the bearer's disposition to make its offspring sterile. + quality + grandchildless + PATO:0001862 + + + lack of fertility in offspring + + + + + A fertility quality inhering in a bearer by virtue of the bearer's disposition to make its offspring sterile. + PATOC:GVG + + + + + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration. + + quality + PATO:0001863 + + + + chronic + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration. + PATOC:cjm + + + + + + + + + + + true + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. Includes spheres and oblate/prolate spheroids. + PATO:0001864 + quality + sphericality + PATO:0001865 + + + + spheroid + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. Includes spheres and oblate/prolate spheroids. + Wikipedia:http://en.wikipedia.org/wiki/Spheroid + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a polar diameter longer than its equatorial diameter. + Image:http://upload.wikimedia.org/wikipedia/commons/8/88/ProlateSpheroid.png + quality + prolate spheroid + PATO:0001866 + + + prolate + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a polar diameter longer than its equatorial diameter. + Wikipedia:http://en.wikipedia.org/wiki/Prolate + + + + + + + + + A shape quality inhering in a bearer by virtue of it being a quadrilateral polygon in which all four angles are right angles. + Image:http://upload.wikimedia.org/wikipedia/en/e/ee/Shaperec.svg + quality + PATO:0001867 + + + rectangular + + + + + A shape quality inhering in a bearer by virtue of it being a quadrilateral polygon in which all four angles are right angles. + Wikipedia:http://en.wikipedia.org/wiki/Rectangular + + + + + + + + + A fluorescence quality inhering in a bearer by virtue of the bearer's exhibiting fluorescence which is self-induced. + quality + PATO:0001868 + + autofluorescence + + + + + A fluorescence quality inhering in a bearer by virtue of the bearer's exhibiting fluorescence which is self-induced. + PATOC:mb + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being abnormal and having a destructive effect on living tissue. + quality + PATO:0001869 + + + pathological + + + + + A quality inhering in a bearer by virtue of the bearer's being abnormal and having a destructive effect on living tissue. + PATOC:cjm + + + + + + + + + A shape quality inhering in a circular disk by virtue of the bearer's having a segment of another circle removed from its edge, so that what remains is a shape enclosed by two circular arcs of different diameters which intersect at two points (usually in such a manner that the enclosed shape does not include the center of the original circle). + Image:http://upload.wikimedia.org/wikipedia/commons/7/74/Crescent.svg + crescentic + quality + bow-shaped + lunate + PATO:0001870 + + + crescent-shaped + + + + + A shape quality inhering in a circular disk by virtue of the bearer's having a segment of another circle removed from its edge, so that what remains is a shape enclosed by two circular arcs of different diameters which intersect at two points (usually in such a manner that the enclosed shape does not include the center of the original circle). + Wikipedia:http://en.wikipedia.org/wiki/Crescent + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having the shape of a kidney. + kidney-shaped + quality + bean shaped + PATO:0001871 + + reniform + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having the shape of a kidney. + ISBN:0881923214 + + + + + + + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resemblance to a cube (a 3-D shape with a square cross section). + cuboidal + quality + block-like + PATO:0001872 + + + cuboid + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resemblance to a cube (a 3-D shape with a square cross section). + PATOC:MAH + + + + + + + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a consistently-sized round cross section. + PATO:0001203 + rod-like + rod-shaped + tubulate + quality + PATO:0001873 + + + cylindrical + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a consistently-sized round cross section. + PATOC:MAH + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being cylindrical, in which the height is less than the diameter. + disc-shaped + disk-shaped + quality + PATO:0001874 + + + discoid + + + + + A shape quality inhering in a bearer by virtue of the bearer's being cylindrical, in which the height is less than the diameter. + PATOC:cjm + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having three angles. + deltoid + quality + delta shaped + triangle + triangle-shaped + PATO:0001875 + + + triangular + + + + + A shape quality inhering in a bearer by virtue of the bearer's having three angles. + wordreference:wordreference + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two parts, roughly spherical and of equal size, connected by a bar. + quality + PATO:0001876 + + + dumbbell-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two parts, roughly spherical and of equal size, connected by a bar. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle; attached at the broad end. + spear-shaped + quality + PATO:0001877 + + + lanceolate + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle; attached at the broad end. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped. + S-shaped + sigmoidal + quality + PATO:0001878 + + + sigmoid + + + + + A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped. + PATOC:CJM + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter U. + horseshoe shaped + horseshoe + quality + PATO:0001879 + + + U-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter U. + WordNet:WordNet + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having a tail or tail-like projection. + caudal + quality + tailed + PATO:0001880 + + caudate + + + + + A quality inhering in a bearer by virtue of the bearer's having a tail or tail-like projection. + PATOC:cjm + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's forming two equal obtuse triangles with a short side in common. + sagittate + quality + PATO:0001881 + + + Gradually enlarged at the base, like the head of an arrow. + arrow-shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's forming two equal obtuse triangles with a short side in common. + ISBN:0881923214 + RKC:RKC + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a slug. + quality + PATO:0001882 + + + limaciform + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a slug. + PATOC:CJM + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's gradually becoming thicker towards the end. + PATO:0001797 + club-like + club-shaped + clubbed + quality + PATO:0001883 + + clavate + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's gradually becoming thicker towards the end. + MP:0000576 + + + + + + + + + + A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water. + + quality + PATO:0001884 + + + hydrophobicity + + + + + A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water. + WordNet:WordNet + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water. + + quality + PATO:0001885 + + + hydrophobic + + + + + A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water. + WordNet:WordNet + + + + + + + + + A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water. + + quality + PATO:0001886 + + + hydrophilicity + + + + + A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water. + answers.com:answers.com + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water. + + quality + PATO:0001887 + + + hydrophilic + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water. + WordNet:WordNet + + + + + + + + + A quality of a liquid inhering in a bearer by virtue of the bearer's ability to mix with (dissolve in) another liquid. + quality + PATO:0001888 + + + miscibility + + + + + A quality of a liquid inhering in a bearer by virtue of the bearer's ability to mix with (dissolve in) another liquid. + Chemicool:Chemicool + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having the border, edge, or outline cut into a series of segments of circles resembling a scallop-shell. + crenate + crenulate + quality + PATO:0001889 + + + scalloped + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having the border, edge, or outline cut into a series of segments of circles resembling a scallop-shell. + Oxford:EnglishDictionary + + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being divided into three branches. + trifurcate + quality + PATO:0001890 + + + tripartite + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being divided into three branches. + InfoVisual:InfoVisual + + + + + + + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; egg-shaped. + egg-shaped + oval + ovoid + quality + eccentric + PATO:0001891 + + + + ovate + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; egg-shaped. + PATOC:mc + + + + + + + + + + + + + + + + + + + + + An odor quality of having decreased odor. + + quality + PATO:0001892 + + decreased odor + + + + + An odor quality of having decreased odor. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An odor quality of having increased odor. + + quality + PATO:0001893 + + increased odor + + + + + An odor quality of having increased odor. + PATOC:GVG + + + + + + + + + An organismal quality inhering in a bearer by virtue of the bearer's physical expression of sexual characteristics. + quality + PATO:0001894 + + phenotypic sex + + + + + + + + + A biological sex quality inhering in an individual or a population that undergo sexual reproduction. + quality + PATO:0001895 + + mating type + + + + + A biological sex quality inhering in an individual or a population that undergo sexual reproduction. + wikipedia:wikipedia + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. + + quality + PATO:0001896 + + unlumenized + + + + + A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. + PATOC:MAH + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's having a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. + + quality + PATO:0001897 + + See GO term: GO:0031974 membrane-enclosed lumen [DEF:"The enclosed volume within a sealed membrane or between two sealed membranes"]. + lumenized + + + + + A structure quality inhering in a bearer by virtue of the bearer's having a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. + PATOC:MAH + + + + + + + + + + + + + + + + + + + + + A circumference which is relatively high. + + quality + PATO:0001898 + + increased circumference + + + + + A circumference which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A circumference which is relatively low. + + quality + PATO:0001899 + + decreased circumference + + + + + A circumference which is relatively low. + PATOC:GVG + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north. + + quality + PATO:0001900 + + front + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north. + PATOC:GVG + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south. + + quality + PATO:0001901 + + back + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south. + PATOC:GVG + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's having one direction only. + quality + PATO:0001902 + + unidirectional + + + + + A directional quality inhering in a bearer by virtue of the bearer's having one direction only. + PATOC:GVG + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's having two directions. + quality + PATO:0001903 + + bi-directional + + + + + A directional quality inhering in a bearer by virtue of the bearer's having two directions. + PATOC:GVG + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction approximating the shape of a circle. + quality + PATO:0001904 + + circling direction + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction approximating the shape of a circle. + PATOC:GVG + + + + + + + + + + + + + + + The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. + having physical part + quality + PATO:0001905 + + has normal numbers of parts of type + + + + + The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. + PATOC:CJM + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's participation in movement. + quality + PATO:0001906 + + movement quality + + + + + A physical quality inhering in a bearer by virtue of the bearer's participation in movement. + PATOC:GVG + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's being like the surface of a compact mass of grapes. + quality + PATO:0001907 + + botryoidal + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's being like the surface of a compact mass of grapes. + PATOC:cvs + + + + + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus. + quality + PATO:0001908 + + + multinucleate + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus. + PATOC:GVG + + + + + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having three nuclei. + quality + PATO:0001909 + + + trinucleate + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having three nuclei. + thefreedictionary:thefreedictionary + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's one part being layered over another connected part. + quality + PATO:0001910 + + folded + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's one part being layered over another connected part. + PATOC:cjm + + + + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting movement in a circular course. + quality + PATO:0001911 + + circling + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting movement in a circular course. + PATOC:mb + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the state of bearer's mechanical, physical, and biochemical processes. + quality + PATO:0001912 + physiological state + + + + + A quality of a single process inhering in a bearer by virtue of the state of bearer's mechanical, physical, and biochemical processes. + PATOC:mb + + + + + + + + + A physiological state which is characterized by periods of high-frequency high amplitude electrical activity in neuronal tissue. + quality + PATO:0001913 + ictal + + + + + A physiological state which is characterized by periods of high-frequency high amplitude electrical activity in neuronal tissue. + PATOC:mb + + + + + + + + + A physiological state which is characterized by normal electrical activity in neuronal tissue. + quality + PATO:0001914 + non-ictal + + + + + A physiological state which is characterized by normal electrical activity in neuronal tissue. + PATOC:mb + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and upper surface of an organism relative to another entity. + quality + PATO:0001915 + + + anterodorsal to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and upper surface of an organism relative to another entity. + PATOC:wd + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and upper surface of an organism relative to another entity. + quality + PATO:0001916 + + + posterodorsal to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and upper surface of an organism relative to another entity. + PATOC:wd + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and abdomen of an organism relative to another entity. + quality + PATO:0001917 + + + anteroventral to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and abdomen of an organism relative to another entity. + PATOC:wd + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and abdomen of an organism relative to another entity. + quality + PATO:0001918 + + + posteroventral to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and abdomen of an organism relative to another entity. + PATOC:wd + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the back or upper surface of an organism. + quality + PATO:0001919 + + mislocalised dorsally + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the back or upper surface of an organism. + PATOC:mb + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the abdomen of an organism. + quality + PATO:0001920 + + mislocalised ventrally + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the abdomen of an organism. + PATOC:mb + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the front of an organism. + quality + PATO:0001921 + + mislocalised anteriorly + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the front of an organism. + PATOC:mb + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the rear of an organism. + quality + PATO:0001922 + + mislocalised posteriorly + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the rear of an organism. + PATOC:mb + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the side of an organism. + quality + PATO:0001923 + + mislocalised laterally + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the side of an organism. + PATOC:mb + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the middle of an organism. + quality + PATO:0001924 + + mislocalised medially + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the middle of an organism. + PATOC:mb + + + + + + + + + A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell. + quality + PATO:0001925 + + This quality either inheres directly in the surface, or in the entity that has the surface. For example, to say that a particular fly wing is curved is shorthand for saying the wing has a surface which is curved. + surface feature shape + + + + + A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell. + PATOC:CJM + + + + + + + + + + + + + + + + + + + + + A fluorescence which is higher than normal. + + high fluorescence + quality + PATO:0001926 + + increased fluorescence + + + + + A fluorescence which is higher than normal. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A fluorescence which is lower than normal. + + low fluorescence + quality + PATO:0001927 + + decreased fluorescence + + + + + A fluorescence which is lower than normal. + PATOC:GVG + + + + + + + + + A texture quality inhering in a bearer by virtue of a local accumulation of fluid underneath the surface of the bearer. + blistering + quality + PATO:0001928 + + + blistered + + + + + A texture quality inhering in a bearer by virtue of a local accumulation of fluid underneath the surface of the bearer. + PATOC:GVG + + + + + + + + + + + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits shape variation or change. + quality + PATO:0001929 + + variability of shape + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits shape variation or change. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape. + + quality + PATO:0001930 + + variant shape + + + + + A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape. + + quality + PATO:0001931 + + invariant shape + + + + + A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape. + PATOC:GVG + + + + + + + + + A pattern quality inhering in a bearer by virtue of the bearer's being placed alternately one above the other. + quality + PATO:0001932 + + alternate placement + + + + + A pattern quality inhering in a bearer by virtue of the bearer's being placed alternately one above the other. + ISBN:0881923214 + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned on opposite sides on the same plane. + quality + PATO:0001933 + + + opposite + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned on opposite sides on the same plane. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being perfectly circular. + quality + PATO:0001934 + + orbicular + + + + + A shape quality inhering in a bearer by virtue of the bearer's being perfectly circular. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being roundish, a little inclining to be oblong. + roundish + quality + PATO:0001935 + + obtuse + + + + + A shape quality inhering in a bearer by virtue of the bearer's being roundish, a little inclining to be oblong. + ISBN:0881923214 + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's being egg-shaped and flat, with the narrow end attached to the base. + quality + obovoid + PATO:0001936 + + obovate + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's being egg-shaped and flat, with the narrow end attached to the base. + wordreference:wordreference + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being oblong, with the lower end very much attenuated. + spathulate + quality + PATO:0001937 + + spatulate + + + + + A shape quality inhering in a bearer by virtue of the bearer's being oblong, with the lower end very much attenuated. + ISBN:0881923214 + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's being oval and a little angular in the middle. + quality + PATO:0001938 + + rhomboid + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's being oval and a little angular in the middle. + ISBN:0881923214 + + + + + + + + + + + true + + + + + + + + + A size quality inhering in a bearer by virtue of the bearer's being many folds greater relative to the normal average. + giant + quality + PATO:0001940 + + gigantic + + + + + A size quality inhering in a bearer by virtue of the bearer's being many folds greater relative to the normal average. + PATOC:UMH + + + + + + + + + A color consisting of yellow and green hues. + quality + PATO:0001941 + + + yellow green + + + + + A color consisting of yellow and green hues. + PATOC:GVG + + + + + + + + + A color consisting of brown and green hues. + olive green + quality + PATO:0001942 + brown green + + + + + A color consisting of brown and green hues. + PATOC:GVG + + + + + + + + + A purple color which has low saturation and low brightness. + quality + PATO:0001943 + + + lilac + + + + + A purple color which has low saturation and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of yellow and orange hue. + quality + PATO:0001944 + + + yellow orange + + + + + A color consisting of yellow and orange hue. + PATOC:GVG + + + + + + + + + A moderate yellow-orange to orange color. + quality + PATO:0001945 + + ochre + + + + + A moderate yellow-orange to orange color. + wordreference:wordreference + + + + + + + + + A color pattern inhering in a bearer by virtue of bearer's exhibiting transverse stripes of one hue or degree of saturation crossing another. + striped + quality + PATO:0001946 + + banded + + + + + A color pattern inhering in a bearer by virtue of bearer's exhibiting transverse stripes of one hue or degree of saturation crossing another. + ISBN:0881923214 + + + + + + + + + A color pattern inhering in a bearer by virtue of bearer's being covered with reticulated lines of a different hue or degree of saturation. + net-like + reticulated + quality + PATO:0001947 + + netted + + + + + A color pattern inhering in a bearer by virtue of bearer's being covered with reticulated lines of a different hue or degree of saturation. + ISBN:0881923214 + + + + + + + + + A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by two or more parallel channels. + quality + fluted + PATO:0001948 + + furrowed + + + + + A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by two or more parallel channels. + PATOC:JE + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly in a little point. + quality + PATO:0001949 + + pointleted + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly in a little point. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating gradually in a rounded end. + quality + PATO:0001950 + + blunt + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating gradually in a rounded end. + ISBN:0881923214 + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being in opposition round a common axis. + quality + PATO:0001951 + + whorled + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being in opposition round a common axis. + ISBN:0881923214 + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being arranged in two opposite rows (and hence in the same plane). + quality + PATO:0001952 + + distichous + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being arranged in two opposite rows (and hence in the same plane). + ISBN:0881923214 + + + + + + + + + A pattern quality inhering in a bearer by virtue of the bearer's consisting of paired parts that alternately cross each other. + crosscutting + intercrossing + intersecting + quality + PATO:0001953 + + decussate + + + + + A pattern quality inhering in a bearer by virtue of the bearer's consisting of paired parts that alternately cross each other. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being linear, very narrow, tapering to a very fine point from a narrow base. + awl-shaped + needle-like + quality + PATO:0001954 + + subulate + + + + + A shape quality inhering in a bearer by virtue of the bearer's being linear, very narrow, tapering to a very fine point from a narrow base. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being narrowly triangular, wider at the apex and tapering toward the base. + wedge-shaped + quality + PATO:0001955 + + cuneate + + + + + A shape quality inhering in a bearer by virtue of the bearer's being narrowly triangular, wider at the apex and tapering toward the base. + wordreference:wordreference + + + + + + + + + + + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits size variation or change. + quality + PATO:0001956 + + variability of size + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits size variation or change. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A variability of size which is relatively low. + + low variability of size + quality + PATO:0001957 + + decreased variability of size + + + + + A variability of size which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A variability of size which is relatively high. + + high variability of size + quality + PATO:0001958 + + increased variability of size + + + + + A variability of size which is relatively high. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated. + + quality + PATO:0001959 + + defasciculated + + + + + A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated. + PATOC:mw + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's parts or projections being interlocked; for example, the fingers of two hands that are clasped. + quality + PATO:0001960 + + interdigitated + + + + + A shape quality inhering in a bearer by virtue of the bearer's parts or projections being interlocked; for example, the fingers of two hands that are clasped. + PATOC:wdahdul + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's touching another entity. + quality + contiguous + PATO:0001961 + + + in contact with + + + + + A structural quality inhering in a bearer by virtue of the bearer's touching another entity. + PATOC:wdahdul + + + + + + + + + A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled inwards spirally on each side. + quality + PATO:0001962 + + involute + + + + + A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled inwards spirally on each side. + ISBN:0881923214 + + + + + + + + + A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled backwards spirally on each side. + quality + PATO:0001963 + + revolute + + + + + A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled backwards spirally on each side. + ISBN:0881923214 + + + + + + + + + A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled spirally downwards. + quality + PATO:0001964 + + circinate + + + + + A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled spirally downwards. + ISBN:0881923214 + + + + + + + + + A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being bent down upon their stalk. + quality + PATO:0001965 + + reclinate + + + + + A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being bent down upon their stalk. + ISBN:0881923214 + + + + + + + + + A curled quality inhering in a bearer by virtue of the bearer's one edge of its surface being wholly rolled up in another. + quality + PATO:0001966 + + convolute + + + + + A curled quality inhering in a bearer by virtue of the bearer's one edge of its surface being wholly rolled up in another. + ISBN:0881923214 + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's having three or more primary branches diverging radially from a single point. + quality + PATO:0001967 + + actinodromous + + + + + A branched quality inhering in a bearer by virtue of the bearer's having three or more primary branches diverging radially from a single point. + Hickey:1988 + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's having two or more parallel primary branches originate beside each other and converge apically. + quality + PATO:0001968 + + parallelodromous + + + + + A branched quality inhering in a bearer by virtue of the bearer's having two or more parallel primary branches originate beside each other and converge apically. + Hickey:1988 + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's having secondary branches terminating at the margin. + quality + PATO:0001969 + + craspedodromous + + + + + A branched quality inhering in a bearer by virtue of the bearer's having secondary branches terminating at the margin. + Hickey:1988 + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's having secondary branches joined together in a series of prominent arches. + quality + PATO:0001970 + + brochidodromous + + + + + A branched quality inhering in a bearer by virtue of the bearer's having secondary branches joined together in a series of prominent arches. + Hickey:1988 + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's having secondary branches freely branching toward the margin. + quality + PATO:0001971 + + cladodromous + + + + + A branched quality inhering in a bearer by virtue of the bearer's having secondary branches freely branching toward the margin. + Hickey:1988 + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's having secondary branches branching into a reticulum toward the margin. + quality + PATO:0001972 + + reticulodromous + + + + + A branched quality inhering in a bearer by virtue of the bearer's having secondary branches branching into a reticulum toward the margin. + Hickey:1988 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being tapering gradually into a rigid point. + quality + PATO:0001973 + + cuspidate + + + + + A shape quality inhering in a bearer by virtue of the bearer's being tapering gradually into a rigid point. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating in a round end, the centre of which is depressed. + quality + PATO:0001974 + + retuse + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating in a round end, the centre of which is depressed. + ISBN:0881923214 + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex. + + quality + PATO:0001975 + + unserrated + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex. + ISBN:0881923214 + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having or lacking sharp straight-edged teeth pointing to the apex. + quality + PATO:0001976 + + serration + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having or lacking sharp straight-edged teeth pointing to the apex. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having at least one salient angle on the margin. + angulate + quality + PATO:0001977 + + angular + + + + + A shape quality inhering in a bearer by virtue of the bearer's having at least one salient angle on the margin. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being regularly divided by deep incisions. + incised + quality + PATO:0001978 + + cut + + + + + A shape quality inhering in a bearer by virtue of the bearer's being regularly divided by deep incisions. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being partly divided into a determinate number of regions. + quality + PATO:0001979 + + + lobed + + + + + A shape quality inhering in a bearer by virtue of the bearer's being partly divided into a determinate number of regions. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having distinct parts arising from a common point or center. + quality + PATO:0001980 + + digitate + + + + + A shape quality inhering in a bearer by virtue of the bearer's having distinct parts arising from a common point or center. + thefreedictionary:thefreedictionary + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an ear. + quality + PATO:0001981 + + auriculate + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an ear. + url:http://www.thefreedictionary.com/auriculate + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's gradually tapering to a slender point. + quality + PATO:0001982 + + attenuate + + + + + A shape quality inhering in a bearer by virtue of the bearer's gradually tapering to a slender point. + url:http://www.thefreedictionary.com/attenuate + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's two basal lobes being united together. + quality + PATO:0001983 + + perfoliate + + + + + A structural quality inhering in a bearer by virtue of the bearer's two basal lobes being united together. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being prolonged below the point of insertion. + quality + PATO:0001984 + + decurrent + + + + + A shape quality inhering in a bearer by virtue of the bearer's being prolonged below the point of insertion. + ISBN:0881923214 + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being kept below its freezing point. + quality + PATO:0001985 + + frozen + + + + + A quality inhering in a bearer by virtue of the bearer's being kept below its freezing point. + OBI:OBI + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's passing into solution. + quality + PATO:0001986 + + + dissolved + + + + + A quality inhering in a bearer by virtue of the bearer's passing into solution. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having a three dimensional cavity with a narrow or no opening, and often containing an anatomical substance. + sacular + quality + PATO:0001987 + + saccular + + + + + A structural quality inhering in a bearer by virtue of the bearer's having a three dimensional cavity with a narrow or no opening, and often containing an anatomical substance. + PATOC:MAH + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having four angles and four sides. + quality + PATO:0001988 + + quadrangular + + + + + A shape quality inhering in a bearer by virtue of the bearer's having four angles and four sides. + url:http://www.oed.com/ + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's having many curves and turns. + quality + twisted + PATO:0001989 + + sinuous + + + + + A curvature quality inhering in a bearer by virtue of the bearer's having many curves and turns. + PATOC:GVG + + + + + + + + + A duration quality of a process inhering in a disease by virtue of the bearer's duration of an impairment of health or of a condition of abnormal functioning. + quality + PATO:0001990 + MAH: I think this term should be obsoleted. Is it used? + duration of disease + + + + + A duration quality of a process inhering in a disease by virtue of the bearer's duration of an impairment of health or of a condition of abnormal functioning. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to being capable of indefinite growth or division. + quality + PATO:0001991 + + + immortal + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to being capable of indefinite growth or division. + answers.com:answers.com + + + + + + + + + An organismal quality inhering in a bearer by virtue of the bearer's consisting cells. + quality + PATO:0001992 + + + cellularity + + + + + An organismal quality inhering in a bearer by virtue of the bearer's consisting cells. + PATOC:GVG + + + + + + + + + + A cellularity quality inhering in a bearer by virtue of the bearer's consisting of more than one cell. + quality + PATO:0001993 + + multicellular + + + + + A cellularity quality inhering in a bearer by virtue of the bearer's consisting of more than one cell. + PATOC:GVG + + + + + + + + + A cellularity quality inhering in a bearer by virtue of the bearer's consisting of exactly one cell. + quality + PATO:0001994 + + unicellular + + + + + A cellularity quality inhering in a bearer by virtue of the bearer's consisting of exactly one cell. + PATOC:GVG + + + + + + + + + + A quality that inheres in an entire organism or part of an organism. + quality + PATO:0001995 + organismal quality + + + + + A quality that inheres in an entire organism or part of an organism. + PATOC:CJM + + + + + + + + + + + true + + + + + + + + + + + + + + + + + + + + + An amount which is relatively low. + + PATO:0000419 + PATO:0000468 + decreased number + present in fewer numbers in organism + quality + decreased + reduced + subnumerary + PATO:0001997 + + decreased amount + + + + + An amount which is relatively low. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of its visibility. + quality + PATO:0001998 + This term was created as a grouping term for the 2 terms "conspicuous" and "inconspicuous". However, it is not clear if these terms should even remain in PATO. + conspicuousness + + + + + A quality inhering in a bearer by virtue of its visibility. + PATOC:MAH + + + + + + + + + The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type. + loss of + quality + PATO:0001999 + + lacks parts or has fewer parts of type + + + + + The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type. + PATOC:CJM + + + + + + + + + + + + + + + A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity. + PATO:0001557 + OBO_REL:lacks_part + lacks all physical parts of type + quality + PATO:0002000 + + Example: [E=organism Q=lacks_all_parts_of_type E2=Wing] - applies to an organism. A relational quality in which the bearer entity has no parts of the specified type. The bearer of this quality has_part = 0 of the indicated entity type, where a comparable organism usually has at least 1 part of the same type. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e lacks all parts of type X at time t, then there exists no instances x of X at t such that x part_of e that has no wings, where wings are normally present in that organism type. In OWL this is equivalent to a restriction on the OBO_REL:has_part relation with cardinality=0, i.e has_part 0 E2. + lacks all parts of type + + + + + A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity. + PATOC:CJM + + + + + + + + + + + + + + + + + + + + + The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. + + PATO:0001569 + decreased number of + has decreased number of + has fewer physical parts of type + quality + PATO:0002001 + + Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type. + has fewer parts of type + + + + + The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. + PATOC:CJM + + + + + + + + + + + + + + + + + + + + + The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. + + PATO:0001560 + has extra parts of + has increased number of + having extra physical parts + having supernumerary physical parts + increased number of + quality + PATO:0002002 + + In polydactyly, the bearer of the quality is the hand, and the entity type being counted is 'finger'. In EQ syntax, E=hand, Q=<this> E2=finger. + has extra parts of type + + + + + The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. + PATOC:CJM + + + + + + + + + A quality that inheres in an entire population or part of a population. + quality + PATO:0002003 + + population quality + + + + + A quality that inheres in an entire population or part of a population. + PATOC:GVG + + + + + + + + + A shape that inheres in a part of a surface. An object can have different surface shapes on different parts of its surface. + quality + PATO:0002004 + + Consider PATO:0001925 + obsolete surface shape + true + + + + + A shape that inheres in a part of a surface. An object can have different surface shapes on different parts of its surface. + PATOC:CJM + + + + + + + + + Surface shape that refers to the inward or outward curvature of the surface. + quality + PATO:0002005 + + concavity + + + + + Surface shape that refers to the inward or outward curvature of the surface. + PATOC:MAH + + + + + + + + + A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity. + quality + 2-D projection + cross-sectional + PATO:0002006 + + 2-D shape + + + + + A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity. + PATOC:CJM + + + + + + + + + + + + + + + A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave. + + Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png + quality + PATO:0002007 + + Use this term or an is_a child of this term when the entire shape of the object is known. + convex 3-D shape + + + + + A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave. + PATOC:CJM + + + + + + + + + + + + + + + A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave. + + Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png + quality + PATO:0002008 + + concave 3-D shape + + + + + A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave. + PATOC:CJM + + + + + + + + + A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity. + quality + PATO:0002009 + + + branchiness + + + + + A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity. + PATOC:MAH + + + + + + + + + A texture quality inhering in a bearer by virtue of the bearer's bing full of small openings or gaps. + quality + PATO:0002010 + + looseness + + + + + A texture quality inhering in a bearer by virtue of the bearer's bing full of small openings or gaps. + url:http://www.wordreference.com/definition/loose + + + + + + + + + A structural quality which is held by a bearer when the latter's disposition the presence of abnormally proliferating masses of cells. + tumorous + quality + PATO:0002011 + + + + neoplastic + + + + + A structural quality which is held by a bearer when the latter's disposition the presence of abnormally proliferating masses of cells. + PATOC:MAH + + + + + + + + + A texture quality that exists through a liquid cover on the surface of the bearer. + quality + PATO:0002012 + + coating + + + + + A texture quality that exists through a liquid cover on the surface of the bearer. + Wikipedia:Wikipedia + + + + + + + + + A structural quality inhering in a bearer by virtue of whether the bearer forms a bundle of anatomical fibers, as of muscle or nerve. + quality + PATO:0002013 + + fasciculation + + + + + A structural quality inhering in a bearer by virtue of whether the bearer forms a bundle of anatomical fibers, as of muscle or nerve. + answers.com:http://www.answers.com/ + + + + + + + + + A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas. + quality + PATO:0002014 + + structure, cavities + + + + + A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + quality + PATO:0002016 + magnitude + + + + + + + + + + high magnitude + quality + PATO:0002017 + increased magnitude + + + + + + + + + + low magnitude + quality + PATO:0002018 + decreased magnitude + + + + + + + + + A growth quality of occurrent in which the growth of an organism, structure or group of organisms does not occur. + agenesis + quality + PATO:0002019 + aplastic growth + + + + + A growth quality of occurrent in which the growth of an organism, structure or group of organisms does not occur. + PATOC:MAH + + + + + + + + + Pink color having high brightness and low saturation. + quality + PATO:0002020 + pale pink + + + + + Pink color having high brightness and low saturation. + PATOC:GVG + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a cone (a 3-D shape with a round cross section that tapers). + Image:http://upload.wikimedia.org/wikipedia/commons/d/d2/Cone_3d.png + cone-shaped + quality + PATO:0002021 + + conical + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a cone (a 3-D shape with a round cross section that tapers). + Wikipedia:http://en.wikipedia.org/wiki/Cone_(geometry) + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a minute projection (villus). + quality + PATO:0002022 + + villiform + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a minute projection (villus). + PATOC:PEM + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an apical-basal axis. + quality + PATO:0002023 + + apical-basal polarity + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an apical-basal axis. + PATOC:MAH + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the anterior-posterior axis. + rostral-caudal polarity + superior-caudal polarity (human torso) + quality + PATO:0002024 + + anterior-posterior polarity + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the anterior-posterior axis. + PATOC:MAH + + + + + + + + + A convex angle that is formed by one side of a polygon and a line extended from an adjacent side. + quality + PATO:0002025 + + + external angle + + + + + A convex angle that is formed by one side of a polygon and a line extended from an adjacent side. + http://en.wikipedia.org/wiki/Internal_angle + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time. + + george gkoutos + 2008-12-18T12:49:19Z + quality + PATO:0002026 + + + + non-progressive + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time. + PATOC:GVG + + + + + + + + + A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per kilogram of solvent. + george + 2009-01-27T10:53:11Z + quality + PATO:0002027 + + + + osmolality + + + + + A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per kilogram of solvent. + Wikipedia:http://en.wikipedia.org/wiki/Osmolarity + + + + + + + + + + + + + + + + + + + + + An osmolality which is relatively low. + + george + 2009-01-27T10:55:33Z + low osmolality + quality + PATO:0002028 + + + decreased osmolality + + + + + An osmolality which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An osmolality which is relatively high. + + george + 2009-01-27T10:56:19Z + high osmolality + quality + PATO:0002029 + + + increased osmolality + + + + + An osmolality which is relatively high. + PATOC:GVG + + + + + + + + + A molecular quality that inheres in a molecular entity by virtue of whether the bearer exhibits the ability of a probe to react precisely with a specific target molecule. + george + 2009-01-27T11:13:52Z + quality + PATO:0002030 + + + + specificity to + + + + + A molecular quality that inheres in a molecular entity by virtue of whether the bearer exhibits the ability of a probe to react precisely with a specific target molecule. + PATOC:mc + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved or tilted such that the tip points upwards. + george + 2009-01-27T11:23:45Z + quality + PATO:0002031 + + upturned + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved or tilted such that the tip points upwards. + PATOC:cjm + + + + + + + + + A reflectivity quality inhering in light by virtue of the bearer's scattering occurring at small angle to the incident beam. + george + 2009-01-27T11:38:49Z + quality + PATO:0002032 + + forward scatter + + + + + A reflectivity quality inhering in light by virtue of the bearer's scattering occurring at small angle to the incident beam. + PATOC:mc + + + + + + + + + A reflective quality that is the light scattering occurring at wide angle (around 90 degrees) to the incident beam. + george + 2009-01-27T11:39:36Z + quality + PATO:0002033 + + side scatter + + + + + A reflective quality that is the light scattering occurring at wide angle (around 90 degrees) to the incident beam. + PATOC:mc + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being unseparated into parts or divisions. + george + 2009-01-27T11:53:46Z + quality + unseparated + PATO:0002034 + + undivided + + + + + A shape quality inhering in a bearer by virtue of the bearer's being unseparated into parts or divisions. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being on the same side in relation to another structure. + george + 2009-02-01T02:04:11Z + ipsilateral + quality + PATO:0002035 + + + + ipsilateral to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being on the same side in relation to another structure. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located towards the central axis of the organism or an extremity. + george + 2009-02-01T02:06:20Z + quality + PATO:0002036 + + + + axial to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located towards the central axis of the organism or an extremity. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer exhibiting deterioration of its structure. + george + 2009-02-03T11:13:19Z + quality + PATO:0002037 + + + degeneration + + + + + A structural quality inhering in a bearer by virtue of the bearer exhibiting deterioration of its structure. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer whose structure which does not deteriorate. + + george + 2009-02-03T11:14:54Z + not degenerate + quality + PATO:0002038 + + non-degenerate + + + + + A structural quality inhering in a bearer whose structure which does not deteriorate. + PATOC:GVG + + + + + + + + + A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces. + + quality + PATO:0002039 + + biconcave + + + + + A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface. + + Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx + quality + PATO:0002040 + + biconvex + + + + + A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface. + thefreedictionary:http://www.thefreedictionary.com/biconvexity + + + + + + + + + A diameter that is along the anterior-posterior axis. + quality + PATO:0002041 + + + anterior-posterior diameter + + + + + A diameter that is along the anterior-posterior axis. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An anterior-posterior diameter quality which is relatively small. + + low anterior-posterior diameter + quality + PATO:0002042 + + decreased anterior-posterior diameter + + + + + An anterior-posterior diameter quality which is relatively small. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An anterior-posterior diameter quality which is relatively large. + + high anterior-posterior diameter + quality + PATO:0002043 + + increased anterior-posterior diameter + + + + + An anterior-posterior diameter quality which is relatively large. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being a quadrilateral with two parallel sides. + trapezoidal + quality + PATO:0002044 + + trapezoid + + + + + A shape quality inhering in a bearer by virtue of the bearer's being a quadrilateral with two parallel sides. + PATOC:GVG + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's having smaller branches arising from larger branches. Resembling a tree in branching structure. + george + 2009-02-15T08:11:41Z + dendriform + dendroid + dendroidal + quality + PATO:0002045 + + dendritic + + + + + A branched quality inhering in a bearer by virtue of the bearer's having smaller branches arising from larger branches. Resembling a tree in branching structure. + PATOC:cvs + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being away from or on the opposite side of the central axis. + george gkoutos + 2009-03-03T04:16:11Z + quality + PATO:0002046 + + + + abaxial to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being away from or on the opposite side of the central axis. + medical-dictionary:http://medical-dictionary.thefreedictionary.com/abaxial + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located on the side nearest to the axis of an organ or organism. + george gkoutos + 2009-03-03T04:22:28Z + quality + PATO:0002047 + + + + adaxial to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located on the side nearest to the axis of an organ or organism. + thefreedictionary:http://www.thefreedictionary.com/adaxial + + + + + + + + + An organismal quality inhering in a bearer by virtue of the bearer's having two or more cell populations that differ in genetic makeup. This situation can affect any type of cell, including blood cells, gametes (egg and sperm cells), and skin. + george gkoutos + 2009-03-03T04:30:52Z + quality + heterogeneity + PATO:0002048 + + mosaicism + + + + + An organismal quality inhering in a bearer by virtue of the bearer's having two or more cell populations that differ in genetic makeup. This situation can affect any type of cell, including blood cells, gametes (egg and sperm cells), and skin. + Medline:http://www.nlm.nih.gov/medlineplus + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis and towards the side. + George Gkoutos + 2009-03-13T12:36:14Z + quality + PATO:0002049 + + lateral and rotional curvature + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis and towards the side. + PATOC:GVG + + + + + + + + + + + + + + + An amount which normal. + george + 2009-03-20T11:16:22Z + present in normal numbers in organism + quality + PATO:0002050 + normal amount + + + + + An amount which normal. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An occurrence which is relatively high. + + George Gkoutos + 2009-03-26T11:10:11Z + increased incidence + quality + PATO:0002051 + increased occurrence + + + + + An occurrence which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An occurrence which is relatively low. + + George Gkoutos + 2009-03-26T11:12:35Z + decreased incidence + quality + PATO:0002052 + decreased occurrence + + + + + An occurrence which is relatively low. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being flattened along dorso-ventral axis. + George Gkoutos + 2009-03-26T03:02:38Z + quality + PATO:0002053 + + dorso-ventrally flattened + + + + + A quality inhering in a bearer by virtue of the bearer's being flattened along dorso-ventral axis. + PATOC:MSP + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being flattened along transverse axis. + George Gkoutos + 2009-03-26T03:03:37Z + laterally flattened + quality + transversely flattened + PATO:0002054 + + laterally compressed + + + + + A quality inhering in a bearer by virtue of the bearer's being flattened along transverse axis. + PATOC:msp + + + + + + + + + + + + + + + + + + + + + A fragility which is relatively high. + + George Gkoutos + 2009-03-26T04:01:37Z + quality + PATO:0002055 + + + increased fragility + + + + + A fragility which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A fragility which is relatively low. + + George Gkoutos + 2009-03-26T04:02:14Z + quality + PATO:0002056 + + + decreased fragility + + + + + A fragility which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An area which is relatively high. + + George Gkoutos + 2009-03-30T04:11:43Z + quality + PATO:0002057 + + increased area + + + + + An area which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An area which is relatively low. + + George Gkoutos + 2009-03-30T04:12:11Z + quality + PATO:0002058 + + decreased area + + + + + An area which is relatively low. + PATOC:GVG + + + + + + + + + The specific wavelength of light emitted by a fluorescent molecule, such as a labelled probe, upon absorption of light at the (higher) excitation wavelength. + George Gkoutos + 2009-05-27T02:25:33Z + quality + PATO:0002059 + + emmision wavelength + + + + + The specific wavelength of light emitted by a fluorescent molecule, such as a labelled probe, upon absorption of light at the (higher) excitation wavelength. + web:http://www.expertglossary.com/ + + + + + + + + + The specific wavelength of radiation that can be retained by a bearer. + George Gkoutos + 2009-05-27T02:33:32Z + quality + PATO:0002060 + + absorption wavelength + + + + + The specific wavelength of radiation that can be retained by a bearer. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + george + 2009-06-05T09:16:46Z + quality + PATO:0002062 + + physical quality of a process + + + + + + + + + A shape inhering in a bearer by virtue of the bearer's being elongated and cylindrical. + George Gkoutos + 2009-07-01T01:44:06Z + quality + PATO:0002063 + + + + columnar + + + + + A shape inhering in a bearer by virtue of the bearer's being elongated and cylindrical. + PATOC:me + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's delimited by a surface with holes. + George Gkoutos + 2009-07-01T01:46:53Z + quality + PATO:0002064 + + + + fenestrated + + + + + A structure quality inhering in a bearer by virtue of the bearer's delimited by a surface with holes. + PATOC:me + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being arranged like rays or radii; radiating from a common center. + George Gkoutos + 2009-07-01T01:48:19Z + stellate + quality + PATO:0002065 + + + + star shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's being arranged like rays or radii; radiating from a common center. + PATOC:me + + + + + + + + + A solid configuration inhering in a material entity by virtue of its constituent atoms, molecules, or ions being arranged in an orderly repeating pattern extending in all three spatial dimensions. + George Gkoutos + 2009-07-01T01:50:40Z + quality + PATO:0002066 + + crystal configuration + + + + + A solid configuration inhering in a material entity by virtue of its constituent atoms, molecules, or ions being arranged in an orderly repeating pattern extending in all three spatial dimensions. + Wikipedia:http://en.wikipedia.org/wiki/Crystal + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's layered configuration. + George Gkoutos + 2009-07-01T02:30:45Z + quality + PATO:0002067 + + stratification + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's layered configuration. + PATOC:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration. + + George Gkoutos + 2009-07-01T02:31:53Z + quality + PATO:0002068 + + + stratified + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration. + PATOC:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration. + + George Gkoutos + 2009-07-01T02:33:41Z + quality + PATO:0002069 + + + unstratified + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration. + PATOC:GVG + + + + + + + + + A molecular quality that arises from the molecular attraction exerted between two atoms or compounds. + George Gkoutos + 2009-09-18T01:16:16Z + quality + PATO:0002070 + + + + + affinity + + + + + A molecular quality that arises from the molecular attraction exerted between two atoms or compounds. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An affinity which is relatively high. + + George Gkoutos + 2009-09-18T01:29:42Z + quality + PATO:0002071 + + + + increased affinity + + + + + An affinity which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An affinity which is relatively low. + + George Gkoutos + 2009-09-18T01:30:11Z + quality + PATO:0002072 + + + + decreased affinity + + + + + An affinity which is relatively low. + PATOC:GVG + + + + + + + + + A molecular quality that arises from the synergistic strength of bond affinities between multiple bond interactions. + George Gkoutos + 2009-09-18T01:41:44Z + quality + PATO:0002073 + + + + + avidity + + + + + A molecular quality that arises from the synergistic strength of bond affinities between multiple bond interactions. + Wikipedia:Wikipedia + + + + + + + + + + + + + + + + + + + + + An avidity which is relatively high. + + George Gkoutos + 2009-09-18T01:45:56Z + quality + PATO:0002074 + + + + increased avidity + + + + + An avidity which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An avidity which is relatively low. + + George Gkoutos + 2009-09-18T01:45:59Z + quality + PATO:0002075 + + + + decreased avidity + + + + + An avidity which is relatively low. + PATOC:GVG + + + + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's movement. + George Gkoutos + 2009-09-18T02:04:48Z + movement behavioural quality + quality + PATO:0002076 + + movement behavioral quality + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's movement. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being positioned with multiple entities of the same type above and below. + George Gkoutos + 2009-09-18T02:11:35Z + quality + PATO:0002077 + + stacked + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being positioned with multiple entities of the same type above and below. + PATOC:CJM + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having an empty space or cavity within. + George Gkoutos + 2009-09-18T02:19:20Z + quality + PATO:0002078 + + hollow + + + + + A quality inhering in a bearer by virtue of the bearer's having an empty space or cavity within. + url:http://www.merriam-webster.com/dictionary/hollow + + + + + + + + + + + true + + + + + + + + + A broken quality inhering in a bearer by virtue of the bearer's being seperated into two contiguous wholes. + George Gkoutos + 2009-09-21T10:18:11Z + quality + PATO:0002080 + + broken into two pieces + + + + + A broken quality inhering in a bearer by virtue of the bearer's being seperated into two contiguous wholes. + PATOC:CJM + + + + + + + + + A broken quality inhering in a bearer by virtue of the bearer's being broken into multiple contiguous wholes. + George Gkoutos + 2009-09-21T10:18:51Z + quality + PATO:0002081 + + shattered + + + + + A broken quality inhering in a bearer by virtue of the bearer's being broken into multiple contiguous wholes. + PATOC:GJM + + + + + + + + + A broken quality inhering in a bearer by virtue of the bearer's being still one contiguous whole but structurally damaged such that in danger of become two or more. + George Gkoutos + 2009-09-21T10:20:06Z + quality + PATO:0002082 + + partially broken + + + + + A broken quality inhering in a bearer by virtue of the bearer's being still one contiguous whole but structurally damaged such that in danger of become two or more. + PATOC:CJM + + + + + + + + + Having extra or fewer parts. + George Gkoutos + 2009-09-21T10:41:58Z + quality + PATO:0002083 + + + altered number of + + + + + Having extra or fewer parts. + PATOC:GVG + + + + + + + + + The period after death of the organism. + George Gkoutos + 2009-09-25T11:29:21Z + quality + PATO:0002084 + + Terms were requested by the OBI consortium but it was later decided that the term was not reflecting a quality rather what it might be refered to as a "conferred quality". + obsolete post-mortem + true + + + + + The period after death of the organism. + thefreedictionary:thefreedictionary + + + + + + + + + The period before death of the organism. + George Gkoutos + 2009-09-25T11:31:13Z + quality + PATO:0002085 + + Terms were requested by the OBI consortium but it was later decided that the term was not reflecting a quality rather what it might be refered to as a "conferred quality". + obsolete pre-mortem + true + + + + + The period before death of the organism. + merriam-webster:merriam-webster + + + + + + + + + + + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being short and wide and tapered distally. + George Gkoutos + 2009-09-30T09:53:43Z + quality + PATO:0002087 + + bullet-shaped + + + + + A quality inhering in a bearer by virtue of the bearer's being short and wide and tapered distally. + PATOC:GVG + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's body consisting of one sac. + George Gkoutos + 2009-10-01T03:00:20Z + quality + PATO:0002088 + + + monocystic + + + + + A structure quality inhering in a bearer by virtue of the bearer's body consisting of one sac. + mondofacto:mondofacto + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's body containing more than one cyst - formations of an epithelium bounded cavity not associated with neoplasia. + George Gkoutos + 2009-10-01T03:02:54Z + multicystic + quality + PATO:0002089 + + polycystic + + + + + A structure quality inhering in a bearer by virtue of the bearer's body containing more than one cyst - formations of an epithelium bounded cavity not associated with neoplasia. + PATOC:GVG + + + + + + + + + A morphology quality inhering in a tumour by virtue of the bearer's exhbiting the morphological characteristics of a glandular epithelial cell. + george + 2009-10-05T11:25:52Z + quality + PATO:0002090 + + + adenomatous + + + + + A morphology quality inhering in a tumour by virtue of the bearer's exhbiting the morphological characteristics of a glandular epithelial cell. + PATOC:GVG + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's having an onset and time course between acute and chronic. + george + 2009-10-05T11:31:35Z + quality + PATO:0002091 + + + + subacute + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's having an onset and time course between acute and chronic. + PATOC:GVG + + + + + + + + + A morphology quality inhering in a neoplastic cell by virtue of the bearer's exhibiting breakdown of cell-cell interaction maintaining tissue architecture, proliferative dysregulation and bizarre modification to nucleus size and shape. + george + 2009-10-05T11:45:53Z + quality + PATO:0002092 + + + anaplastic + + + + + A morphology quality inhering in a neoplastic cell by virtue of the bearer's exhibiting breakdown of cell-cell interaction maintaining tissue architecture, proliferative dysregulation and bizarre modification to nucleus size and shape. + PATOC:GVG + + + + + + + + + A volume quality inhering in a degenerating cell by virtue of the bearer's exhibiting an increase in volume associated with cytoplasmic abnormalities. + george + 2009-10-05T12:01:13Z + quality + PATO:0002093 + + + ballooning + + + + + A volume quality inhering in a degenerating cell by virtue of the bearer's exhibiting an increase in volume associated with cytoplasmic abnormalities. + PATOC:GVG + + + + + + + + + An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for basic dyes under specific ph conditions. + george + 2009-10-05T12:05:23Z + quality + PATO:0002094 + + + + basophilic + + + + + An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for basic dyes under specific ph conditions. + PATOC:GVG + + + + + + + + + A disposition inhering in a tumour to progress or fail to progress during it's life time. + george + 2009-10-05T12:15:02Z + quality + PATO:0002095 + + obsolete neoplasm disposition + true + + + + + A disposition inhering in a tumour to progress or fail to progress during it's life time. + PATOC:GVG + + + + + + + + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition not to progress, invade surrounding tissues or metastasize. + george + 2009-10-05T12:47:14Z + quality + benign + PATO:0002096 + + + + neoplastic, non-malignant + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition not to progress, invade surrounding tissues or metastasize. + PATOC:GVG + + + + + + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to progress, invade surrounding tissues or metastasize. + george + 2009-10-05T12:50:22Z + quality + PATO:0002097 + + + + neoplastic, malignant + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to progress, invade surrounding tissues or metastasize. + PATOC:GVG + + + + + + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to spread and invade distant tissues. + george + 2009-10-05T12:54:48Z + quality + PATO:0002098 + + + + neoplastic, metastatic + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to spread and invade distant tissues. + PATOC:GVG + + + + + + + + + A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type. + + george + 2009-10-05T12:58:54Z + quality + PATO:0002099 + + + differentiated + + + + + A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type. + PATOC:GVG + + + + + + + + + A cellular quality inhering in a bearer by virtue of having not yet acquired a special structure of function. + + george + 2009-10-05T12:59:21Z + quality + PATO:0002100 + + + undifferentiated + + + + + A cellular quality inhering in a bearer by virtue of having not yet acquired a special structure of function. + PATOC:GVG + + + + + + + + + A cellular quality inhering in a bearer by virtue of having changed from one fully differentiated state into another. + george + 2009-10-05T01:09:09Z + quality + trans-differentiated + PATO:0002101 + + + metaplastic + + + + + A cellular quality inhering in a bearer by virtue of having changed from one fully differentiated state into another. + PATOC:GVG + + + + + + + + + A cellular quality inhering in a cell that arises by virtue of whether the bearer exhibits the ability to grow and proliferate in number through cell division. + george + 2009-10-05T01:16:31Z + quality + PATO:0002102 + + + + proliferative + + + + + A cellular quality inhering in a cell that arises by virtue of whether the bearer exhibits the ability to grow and proliferate in number through cell division. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's penetrating or permeating another substance or area. + george + 2009-10-05T01:27:56Z + infiltrating + quality + PATO:0002103 + + + infiltrative + + + + + A structural quality inhering in a bearer by virtue of the bearer's penetrating or permeating another substance or area. + PATOC:GVG + + + + + + + + + A compositional quality inhering in an bearer by virtue of the bearer's infiltration by leukocytes, local edema and accumulation of plasma proteins. + george + 2009-10-05T01:37:35Z + quality + PATO:0002104 + + + inflamed + + + + + A compositional quality inhering in an bearer by virtue of the bearer's infiltration by leukocytes, local edema and accumulation of plasma proteins. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's exhibiting excessive discharge of blood from the blood vessels. + george + 2009-10-05T01:55:53Z + quality + PATO:0002105 + + + hemorrhagic + + + + + A structural quality inhering in a bearer by virtue of the bearer's exhibiting excessive discharge of blood from the blood vessels. + PATOC:GVG + + + + + + + + + A cellular quality inhering in a bearer by virtue of its lacking most of the cellular characteristics which would allow it to be fully differentiated. + george + 2009-10-05T02:53:43Z + quality + PATO:0002106 + + + poorly differentiated + + + + + A cellular quality inhering in a bearer by virtue of its lacking most of the cellular characteristics which would allow it to be fully differentiated. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being at the edge or boundary of a related entity. + george + 2009-10-05T02:58:16Z + quality + PATO:0002107 + + + + peripheral + + + + + A positional quality inhering in a bearer by virtue of the bearer's being at the edge or boundary of a related entity. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's resembling small nipple like projection. + george + 2009-10-05T03:04:52Z + quality + PATO:0002108 + + + papillary + + + + + A quality inhering in a bearer by virtue of the bearer's resembling small nipple like projection. + PATO:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's resembling cheese. + george + 2009-10-05T03:09:27Z + cheese-like + quality + PATO:0002109 + + + caseous + + + + + A structural quality inhering in a bearer by virtue of the bearer's resembling cheese. + answers.com:answers.com + + + + + + + + + A cellular quality inhering in a bearer by virtue of its having most of the cellular characteristics of the tissue of origin. + george + 2009-10-05T03:26:29Z + quality + PATO:0002110 + + + well differentiated + + + + + A cellular quality inhering in a bearer by virtue of its having most of the cellular characteristics of the tissue of origin. + PATOC:GVG + + + + + + + + + A cellular quality inhering in a bearer by virtue of its lacking few of the cellular characteristics which would allow it to be fully differentiated. + george + 2009-10-05T03:29:42Z + quality + PATO:0002111 + + + moderately well differentiated + + + + + A cellular quality inhering in a bearer by virtue of its lacking few of the cellular characteristics which would allow it to be fully differentiated. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes. + + george + 2009-10-05T03:37:05Z + PATO:0000649 + quality + permeable + pierced + PATO:0002112 + + + perforate + + + + + A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes. + answers.com:answers.com + + + + + + + + + Perforated like a sieve. + george + 2009-10-05T03:38:22Z + quality + PATO:0002113 + + + cribriform + + + + + Perforated like a sieve. + merriam-webster:merriam-webster + + + + + + + + + A composition quality inhering in a bearer by virtue of the bearer's containing excess lipid. + george + 2009-10-05T03:47:15Z + quality + PATO:0002114 + + + fatty + + + + + A composition quality inhering in a bearer by virtue of the bearer's containing excess lipid. + PATOC:GVG + + + + + + + + + A composition quality inhering in a bearer by virtue of the bearer's containing fibrin. + george + 2009-10-05T04:01:01Z + quality + PATO:0002115 + + fibrinoid + + + + + A composition quality inhering in a bearer by virtue of the bearer's containing fibrin. + PATOC:GVG + + + + + + + + + A composition quality inhering in exudate by virtue of the bearer's containing fibrin. + george + 2009-10-05T04:03:03Z + quality + PATO:0002116 + + + fibrinopurulent + + + + + A composition quality inhering in exudate by virtue of the bearer's containing fibrin. + PATOC:GVG + + + + + + + + + A morphology quality inhering in a bearer by virtue of the bearer's exhbiting the morphological characteristics of a gland. + george + 2009-10-05T04:11:30Z + quality + PATO:0002117 + + + glandular + + + + + A morphology quality inhering in a bearer by virtue of the bearer's exhbiting the morphological characteristics of a gland. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being present in more than two copies. + george + 2009-10-06T03:28:38Z + quality + PATO:0002118 + + + multiple + + + + + A quality inhering in a bearer by virtue of the bearer's being present in more than two copies. + PATOC:GVG + + + + + + + + + A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of intracellular fluid. + george + 2009-10-06T03:45:58Z + quality + PATO:0002119 + + + hydropic + + + + + A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of intracellular fluid. + PATOC:GVG + + + + + + + + + A quality inhering a bearer by virtue of the bearer's ability to generate pus. + george + 2009-10-06T03:56:00Z + quality + purulent + PATO:0002120 + + + suppurative + + + + + A quality inhering a bearer by virtue of the bearer's ability to generate pus. + PATOC:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's structureresembling an irregular meshwork with cross-linking struts. + george + 2009-10-06T03:57:55Z + quality + PATO:0002121 + + + trabecular + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's structureresembling an irregular meshwork with cross-linking struts. + PATOC:GVG + + + + + + + + + A composition quality inhering in a bearer by virtue of the bearer's being composed of more than one identifiable entities. + george + 2009-10-06T04:29:17Z + quality + PATO:0002122 + + + mixed + + + + + A composition quality inhering in a bearer by virtue of the bearer's being composed of more than one identifiable entities. + PATOC:GVG + + + + + + + + + Being smallest in amount, extent or degree. + george + 2009-10-06T04:33:48Z + quality + PATO:0002123 + + + minimal + + + + + Being smallest in amount, extent or degree. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer. + george + 2009-10-06T04:37:14Z + quality + PATO:0002124 + + + laminar + + + + + A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's consisting a knot-like mass. + george + 2009-10-06T04:40:06Z + quality + PATO:0002125 + + + nodular + + + + + A quality inhering in a bearer by virtue of the bearer's consisting a knot-like mass. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's containing bone. + george + 2009-10-06T04:42:11Z + bony + quality + PATO:0002126 + + + osseous + + + + + A quality inhering in a bearer by virtue of the bearer's containing bone. + PATOC:GVG + + + + + + + + + A hardness quality of being rigid and resistant to pressure and fibrous. + george + 2009-10-06T04:49:30Z + quality + PATO:0002127 + + + + scirrhous + + + + + A hardness quality of being rigid and resistant to pressure and fibrous. + PATOC:GVG + + + + + + + + + A quality inhering a bearer by virtue of the bearer's containing or resembling serum. + george + 2009-10-06T04:51:16Z + quality + PATO:0002128 + + serous + + + + + A quality inhering a bearer by virtue of the bearer's containing or resembling serum. + PATOC:GVG + + + + + + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues. + george + 2009-10-06T05:02:45Z + quality + PATO:0002129 + + + + neoplastic, invasive + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues. + PATOC:GVG + + + + + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues to a large extend. + george + 2009-10-06T05:03:13Z + quality + PATO:0002130 + + + neoplastic, deeply invasive + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues to a large extend. + PATOC:GVG + + + + + + + + + A displaced angular placement quality inhering in a body part by virtue of the bearer's movement away from the medial plane of the body. + george + 2009-10-13T06:38:53Z + quality + PATO:0002131 + + + abduction + + + + + A displaced angular placement quality inhering in a body part by virtue of the bearer's movement away from the medial plane of the body. + wikipedia:wikipedia + + + + + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition not to invade surrounding tissues. + george + 2009-10-06T05:04:18Z + quality + PATO:0002132 + + + + neoplastic, non-invasive + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition not to invade surrounding tissues. + PATOC:GVG + + + + + + + + + A displaced angular placement quality inhering in a body part by virtue of the bearer's movement closer the medial plane of the body. + george + 2009-10-13T06:41:39Z + quality + PATO:0002133 + + + This term is also used in reference to the operation of the muscle in anatomy or musculature. + adduction + + + + + A displaced angular placement quality inhering in a body part by virtue of the bearer's movement closer the medial plane of the body. + wikipedia:wikipedia + + + + + + + + + A composition quaity inhering in a bearer by virtue of the bearer's containing of or pertaining to fibrils, or nanoscale fibers. + george + 2009-10-26T12:53:47Z + fibrillate + quality + PATO:0002134 + + fibrillary + + + + + A composition quaity inhering in a bearer by virtue of the bearer's containing of or pertaining to fibrils, or nanoscale fibers. + wikipedia:wikipedia + + + + + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's delay to complete the closure of the opening of an anatomical entity. + george + 2009-10-26T01:03:17Z + quality + PATO:0002135 + delayed closure + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's delay to complete the closure of the opening of an anatomical entity. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's relative inability of electromagnetism to pass through a particular material, particularly X-rays. + george + 2009-10-26T01:14:38Z + quality + PATO:0002136 + + + + radiopacity + + + + + A quality inhering in a bearer by virtue of the bearer's relative inability of electromagnetism to pass through a particular material, particularly X-rays. + Wikipedia:Wikipedia + + + + + + + + + A readiopacity quality inhering in a bearer by virtue of the bearer's prevention of the passage of electromagnetic radiation. + george + 2009-10-26T01:16:08Z + quality + PATO:0002137 + + + radiopaque + + + + + A readiopacity quality inhering in a bearer by virtue of the bearer's prevention of the passage of electromagnetic radiation. + Wikipedia:Wikipedia + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be eaten. + george + 2009-10-26T01:20:24Z + edibleness + quality + PATO:0002138 + + + + edibility + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be eaten. + PATOC:VO + + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer being suitable for use as food. + + george + 2009-10-26T01:21:34Z + quality + PATO:0002139 + + + + edible + + + + + A physical quality inhering in a bearer by virtue of the bearer being suitable for use as food. + PATOC:VO + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food. + + george + 2009-10-26T01:22:27Z + quality + PATO:0002140 + + + + inedible + + + + + A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food. + PATOC:VO + + + + + + + + + A density quality which lacks pattern. + george + 2009-10-28T01:57:53Z + quality + PATO:0002141 + + irregular density + + + + + A density quality which lacks pattern. + PATOC:GVG + + + + + + + + + george + 2009-10-28T03:14:54Z + quality + PATO:0002142 + + bracket + + + + + + + + + george + 2009-10-30T02:18:39Z + quality + PATO:0002143 + + sloped downward + + + + + + + + + + + + + + + + + + + + + A radiopacity that is relatively high. + + george + 2009-10-30T03:30:39Z + quality + PATO:0002144 + + + increased radiopacity + + + + + A radiopacity that is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A radiopacity that is relatively low. + + george + 2009-10-30T03:31:31Z + quality + PATO:0002145 + + + decreased radiopacity + + + + + A radiopacity that is relatively low. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the severity of infectious disease caused by the bearer in a target organism. + george + 2009-10-30T05:04:06Z + quality + PATO:0002146 + + + virulence + + + + + A quality inhering in a bearer by virtue of the severity of infectious disease caused by the bearer in a target organism. + https://orcid.org/0000-0001-5208-3432 + https://orcid.org/0000-0001-8941-3984 + + + + + + + + + + + + + + + + + + + + + A virulence that is relatively low. + + george + 2009-10-30T05:05:02Z + attenuated + quality + PATO:0002147 + + reduced virulence + + + + + A virulence that is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A virulence that is relatively high. + + george + 2009-10-30T05:13:10Z + quality + PATO:0002148 + + increased virulence + + + + + A virulence that is relatively high. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer exhibiting increased density resulting in exhibiting increased degree of radiopacity (in X-rays). + george + 2009-11-03T02:59:08Z + quality + PATO:0002149 + + ivory + + + + + A quality inhering in a bearer by virtue of the bearer exhibiting increased density resulting in exhibiting increased degree of radiopacity (in X-rays). + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the part of the body from which the tail arises. + george + 2009-11-06T01:13:10Z + splayed inferior (human torso) + splayed posterior + quality + PATO:0002150 + + splayed caudal + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the part of the body from which the tail arises. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the back or upper surface of an organism. + george + 2009-11-06T01:14:09Z + quality + splayed posterior (human torso) + PATO:0002151 + + splayed dorsal + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the back or upper surface of an organism. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the side. + george + 2009-11-06T01:14:22Z + quality + PATO:0002152 + + splayed lateral + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the side. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the front of an organism. + george + 2009-11-06T01:14:31Z + splayed anterior + splayed superior (human torso) + quality + PATO:0002153 + + splayed rostral + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the front of an organism. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the abdomen of an organism. + george + 2009-11-06T01:14:42Z + splayed anterior (human torso) + splayed inferior (human head) + quality + PATO:0002154 + + splayed ventral + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the abdomen of an organism. + PATOC:GVG + + + + + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the middle of an organism. + george + 2009-11-06T02:23:28Z + internally rotated + quality + PATO:0002155 + + + medially rotated + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the middle of an organism. + PATOC:GVG + + + + + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the side of an organism. + george + 2009-11-06T02:25:10Z + externally rotated + quality + PATO:0002156 + + + laterally rotated + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the side of an organism. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being slightly out of its usual or proper place, or position. + george + 2009-11-06T03:34:15Z + PATO:0002160 + partial dislocated towards + subluxation + suluxated towards + quality + PATO:0002157 + + + partially dislocated + + + + + A positional quality inhering in a bearer by virtue of the bearer's being slightly out of its usual or proper place, or position. + PATOC:GVG + + + + + + + + + + + true + + + + + + + + + + + true + + + + + + + + + + + true + + + + + + + + + Having two horns or horn-shaped branches. + george + 2009-11-11T02:37:52Z + quality + PATO:0002161 + + bicornuate + + + + + Having two horns or horn-shaped branches. + mondofacto:mondofacto + + + + + + + + + + + + + + + + + + + + + A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch of an increased apical height. + george + 2009-11-26T02:34:06Z + quality + PATO:0002162 + + high-arched + + + + + A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch of an increased apical height. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it into the surface or boundary of another entity. + george + 2009-11-26T04:50:43Z + quality + PATO:0002163 + + + + herniated into + + + + + A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it into the surface or boundary of another entity. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the middle. + george + 2009-12-02T10:06:21Z + quality + PATO:0002164 + + curved medial + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the middle. + PATOC:GVG + + + + + + + + + To bent or hang downwards. + george + 2009-12-02T03:32:55Z + sagging + quality + PATO:0002165 + + drooping + + + + + To bent or hang downwards. + thefreedictionary.:thefreedictionary. + + + + + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's premature completion of the closure of the opening of an anatomical entity. + george + 2009-12-02T04:10:10Z + quality + PATO:0002166 + + premature closure + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's premature completion of the closure of the opening of an anatomical entity. + PATOC:GVG + + + + + + + + + A protruding quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded out of the surface or boundary of another entity. + george + 2009-12-02T05:19:32Z + quality + PATO:0002167 + + + + herniated out of + + + + + A protruding quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded out of the surface or boundary of another entity. + PATOC:GVG + + + + + + + + + An angular placement quality inhering in a bearer by virtue of the bearer being changed in position in relation to another entity. + george + 2010-01-14T04:45:18Z + quality + mislocalised to + PATO:0002168 + + displaced to + + + + + An angular placement quality inhering in a bearer by virtue of the bearer being changed in position in relation to another entity. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being split along the median axis. + george + 2010-02-03T04:37:15Z + quality + PATO:0002169 + + split medially + + + + + A shape quality inhering in a bearer by virtue of the bearer's being split along the median axis. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being split asymmetrically on one side. + george + 2010-02-03T04:37:40Z + quality + PATO:0002170 + + split laterally + + + + + A shape quality inhering in a bearer by virtue of the bearer's being split asymmetrically on one side. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being split on two side. + george + 2010-02-03T04:37:53Z + quality + PATO:0002171 + + split bilaterally + + + + + A shape quality inhering in a bearer by virtue of the bearer's being split on two side. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being split along the radial axis. + george + 2010-02-03T04:42:35Z + quality + PATO:0002172 + + split radially + + + + + A shape quality inhering in a bearer by virtue of the bearer's being split along the radial axis. + PATOC:GVG + + + + + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning towards an additional entity. + George Gkoutos + 2010-02-22T03:18:17Z + quality + PATO:0002173 + + + misaligned towards + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning towards an additional entity. + PATOC:GVG + + + + + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning away from an additional entity. + George Gkoutos + 2010-02-22T03:18:48Z + quality + PATO:0002174 + + + misaligned away from + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning away from an additional entity. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's changed direction of position towards another entity. + George Gkoutos + 2010-02-25T09:14:42Z + quality + PATO:0002175 + + deviation + + + + + A spatial quality inhering in a bearer by virtue of the bearer's changed direction of position towards another entity. + PATO:GVG + + + + + + + + + A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the side. + George Gkoutos + 2010-02-25T09:16:04Z + quality + PATO:0002176 + + deviation towards the lateral side + + + + + A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the side. + PATOC:GVG + + + + + + + + + A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the middle. + George Gkoutos + 2010-02-25T09:16:56Z + quality + PATO:0002177 + + deviation towards the medial side + + + + + A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the middle. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position around a central point or axis. + George Gkoutos + 2010-02-25T11:24:58Z + quality + PATO:0002178 + + mislocalised radially + + + + + A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position around a central point or axis. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards to point of attachment or origin. + George Gkoutos + 2010-02-25T12:34:48Z + quality + PATO:0002179 + + mislocalised proximally + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards to point of attachment or origin. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being free of curves, bends, or angles. + George Gkoutos + 2010-02-28T08:54:59Z + quality + PATO:0002180 + + straight + + + + + A shape quality inhering in a bearer by virtue of the bearer's being free of curves, bends, or angles. + merriam-webster:merriam-webster + + + + + + + + + A positional quality inhering in a bearer by virtue the bearer's being changed in position. + George Gkoutos + 2010-03-01T02:56:33Z + quality + PATO:0002181 + + displaced + + + + + A positional quality inhering in a bearer by virtue the bearer's being changed in position. + PATOC:GVG + + + + + + + + + A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc. + George Gkoutos + 2010-03-10T03:18:15Z + PATO:0002061 + relational molecular quality + quality + PATO:0002182 + molecular quality + + + + + A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc. + PATOC:GVG + + + + + + + + + A molecular quality that inheres in a molecular entity by virtue of whether that there is a presence of cycles in the connection of the atoms within the molecular entity. + George Gkoutos + 2010-03-10T03:19:46Z + quality + PATO:0002183 + + cyclicity + + + + + A molecular quality that inheres in a molecular entity by virtue of whether that there is a presence of cycles in the connection of the atoms within the molecular entity. + PATOC:JH + + + + + + + + + Cyclic cyclicity inheres in a molecule when the atoms of the molecule do contain at least one cycle in the atom-atom connection paths (through bonds). + George Gkoutos + 2010-03-10T03:20:54Z + quality + PATO:0002184 + + cyclic cyclicity + + + + + Cyclic cyclicity inheres in a molecule when the atoms of the molecule do contain at least one cycle in the atom-atom connection paths (through bonds). + PATOC:JH + + + + + + + + + Acyclic cyclicity inheres in a molecule when the atoms within the molecule do not contain at least one cycle in the atom-atom connection paths (through the bonds). + George Gkoutos + 2010-03-10T03:21:39Z + quality + PATO:0002185 + + acyclic cyclicity + + + + + Acyclic cyclicity inheres in a molecule when the atoms within the molecule do not contain at least one cycle in the atom-atom connection paths (through the bonds). + PATOC:JH + + + + + + + + + A molecular quality that inheres in a molecular entity by virtue of whether or not the molecular entity has a separation of electric charge which leads to the molecule having an electric dipole. + George Gkoutos + 2010-03-10T03:22:04Z + quality + PATO:0002186 + + + polarity + + + + + A molecular quality that inheres in a molecular entity by virtue of whether or not the molecular entity has a separation of electric charge which leads to the molecule having an electric dipole. + PATOC:JH + + + + + + + + + + Polar polarity is a quality that inheres in a molecular entity when the molecular entity is polar, i.e. does possess an electric dipole. + George Gkoutos + 2010-03-10T03:22:49Z + quality + PATO:0002187 + + polar polarity + + + + + Polar polarity is a quality that inheres in a molecular entity when the molecular entity is polar, i.e. does possess an electric dipole. + PATOC:JH + + + + + + + + + A molecular quality which inheres in a molecular entity when the molecular entity does not possess an electrical dipole. + George Gkoutos + 2010-03-10T03:24:01Z + quality + PATO:0002188 + + nonpolar polarity + + + + + A molecular quality which inheres in a molecular entity when the molecular entity does not possess an electrical dipole. + PATOC:JH + + + + + + + + + The ease of distortion of the electron cloud of a molecular entity by an electric field. + George Gkoutos + 2010-03-10T03:24:47Z + quality + PATO:0002189 + + + electric polarizability + + + + + The ease of distortion of the electron cloud of a molecular entity by an electric field. + PATOC:JH + + + + + + + + + A molecular quality that inheres in a molecular entity by virtue of the presence of a conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. + George Gkoutos + 2010-03-10T03:25:27Z + quality + PATO:0002190 + + + aromaticity + + + + + A molecular quality that inheres in a molecular entity by virtue of the presence of a conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. + PATOC:JH + + + + + + + + + + A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. + + George Gkoutos + 2010-03-10T03:25:59Z + quality + PATO:0002191 + + aromatic + + + + + A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. + PATOC:JH + + + + + + + + + A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic. + + George Gkoutos + 2010-03-10T03:26:41Z + quality + PATO:0002192 + + non-aromatic + + + + + A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic. + PATOC:JH + + + + + + + + + A molecular quality that inheres in a molecular entity by virtue of the overall electric charge of the molecule, which is due to a comparison between the total number of electrons and the total number of protons. + George Gkoutos + 2010-03-10T03:28:54Z + quality + PATO:0002193 + + + electric charge + + + + + A molecular quality that inheres in a molecular entity by virtue of the overall electric charge of the molecule, which is due to a comparison between the total number of electrons and the total number of protons. + PATOC:JH + + + + + + + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing the same amount of electrons overall as protons, thus having an overall neutral charge. + George Gkoutos + 2010-03-10T03:29:37Z + quality + PATO:0002194 + + neutral charge + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing the same amount of electrons overall as protons, thus having an overall neutral charge. + PATOC:JH + + + + + + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge. + + George Gkoutos + 2010-03-10T03:30:06Z + quality + PATO:0002195 + + positive charge + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge. + PATOC:JH + + + + + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge. + + George Gkoutos + 2010-03-10T03:30:39Z + quality + PATO:0002196 + + negative charge + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge. + PATOC:JH + + + + + + + + + A quality that describes the power of an atom to attract electrons to itself . + George Gkoutos + 2010-03-10T03:31:15Z + quality + PATO:0002197 + + + + electronegativity + + + + + A quality that describes the power of an atom to attract electrons to itself . + PATOC:JH + + + + + + + + + A quality inhering in a bearer by virtue of its constitution. + George Gkoutos + 2010-03-15T04:35:27Z + quality + PATO:0002198 + + quality of a substance + + + + + A quality inhering in a bearer by virtue of its constitution. + PATOC:GVG + + + + + + + + + A quality which inheres in a substance by virtue of the ease with which the substance can be changed from a solid to a liquid state especially by the application of heat. + George Gkoutos + 2010-03-15T04:36:57Z + quality + PATO:0002199 + + meltability + + + + + A quality which inheres in a substance by virtue of the ease with which the substance can be changed from a solid to a liquid state especially by the application of heat. + PATOC:JH + + + + + + + + + A quality which inheres in a substance by virtue of the ease with which the substance can be changed into a gaseous state. + George Gkoutos + 2010-03-15T04:38:02Z + quality + PATO:0002200 + + vaporizability + + + + + A quality which inheres in a substance by virtue of the ease with which the substance can be changed into a gaseous state. + PATOC:JH + + + + + + + + + A behavioral quality inhering ina bearer by virtue of the bearer's unequal distribution of fine motor skill between its left and right hands or feet. + haendel + 2010-03-22T05:48:33Z + quality + PATO:0002201 + + + Adapted from Wikipedia and the birnlex term that is dbxref'd. Added on behalf of OBI at March 2010 workshop. + handedness + + + + + A behavioral quality inhering ina bearer by virtue of the bearer's unequal distribution of fine motor skill between its left and right hands or feet. + birnlex:2178 + + + + + + + + + Handedness where the organism preferentially uses the left hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot. + haendel + 2010-03-22T05:49:06Z + quality + PATO:0002202 + + + left handedness + + + + + Handedness where the organism preferentially uses the left hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot. + birnlex:2038 + + + + + + + + + Handedness where the organism preferentially uses the right hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot. + haendel + 2010-03-22T05:49:19Z + quality + PATO:0002203 + + + right handedness + + + + + Handedness where the organism preferentially uses the right hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot. + birnlex:2184 + + + + + + + + + Handedness where the organism exhibits no overall dominance in the use of right or left hand or foot in the performance of tasks that require one hand or foot or a dominant hand or foot. + haendel + 2010-03-22T05:49:30Z + quality + PATO:0002204 + + + ambidextrous handedness + + + + + Handedness where the organism exhibits no overall dominance in the use of right or left hand or foot in the performance of tasks that require one hand or foot or a dominant hand or foot. + birnlex:2042 + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's ability to hold an electrical charge. + George Gkoutos + 2010-03-25T09:42:51Z + quality + PATO:0002205 + + + + Capacitance is also a measure of the amount of electrical energy stored (or separated) for a given electric potential. + capacitance + + + + + A quality inhering in a bearer by virtue of the bearer's ability to hold an electrical charge. + Wikipedia:Wikipedia + + + + + + + + + A maturity quality inhering to a bearer by virtue of the bearer's being at the point or short after birth. + George Gkoutos + 2010-05-07T12:11:47Z + quality + PATO:0002206 + + neonatal + + + + + A maturity quality inhering to a bearer by virtue of the bearer's being at the point or short after birth. + PATOC:GVG + + + + + + + + + A quality that is the distance between the end of the inserted object and the surface of the object into which it penetrates. + George Gkoutos + 2010-05-14T11:40:24Z + quality + PATO:0002207 + + + + insertion depth + + + + + A quality that is the distance between the end of the inserted object and the surface of the object into which it penetrates. + PATOC:GVG + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a spoon. + george + 2010-07-08T12:13:12Z + quality + PATO:0002208 + + spoon-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a spoon. + thefreedictionary:http://www.thefreedictionary.com/spoon-shaped + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having the shape of an incisor tooth. + george + 2010-07-08T12:16:04Z + quality + PATO:0002209 + + incisiform + + + + + A shape quality inhering in a bearer by virtue of the bearer's having the shape of an incisor tooth. + thefreedictionary:http://www.thefreedictionary.com/incisiform + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a teardrop. + george + 2010-07-08T12:19:08Z + bulb-shaped + bulblike + quality + swollen + PATO:0002210 + + bulbous + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a teardrop. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or inward. + george + 2010-07-08T12:26:45Z + quality + PATO:0002211 + + recurved + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or inward. + merriam-webster:http://www.merriam-webster.com/dictionary/recurved + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being small or narrow in circumference or width in proportion to length or height. + george + 2010-07-08T01:32:26Z + quality + gracile + PATO:0002212 + + slender + + + + + A shape quality inhering in a bearer by virtue of the bearer's being small or narrow in circumference or width in proportion to length or height. + merriam-webster:http://www.merriam-webster.com/dictionary/slender + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate. + george + 2010-07-08T01:47:09Z + quality + PATO:0002213 + + + obclavate + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate. + PATOC:GVG + + + + + + + + + A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having two lobes. + george + 2010-07-08T01:54:08Z + quality + PATO:0002214 + + + bilobed + + + + + A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having two lobes. + thefreedictionary:http://www.thefreedictionary.com/bilobed + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having the shape of a scythe or sickle. + george + 2010-07-08T01:57:46Z + falcate + hooked + scythe-shaped + sickle-shaped + unciform + uncinate + quality + PATO:0002215 + + falciform + + + + + A shape quality inhering in a bearer by virtue of the bearer's having the shape of a scythe or sickle. + merriam-webster:http://www.merriam-webster.com/dictionary/falciform + + + + + + + + + A molecular quality that pertains to the post-translational modification of a protein by the covalent attachment of one or more ubiquitin monomer. + george + 2010-07-08T02:00:37Z + quality + Ubiquitylation + PATO:0002216 + + ubiquinated + + + + + A molecular quality that pertains to the post-translational modification of a protein by the covalent attachment of one or more ubiquitin monomer. + neurolex:http://neurolex.org/ + + + + + + + + + A molecular quality inhering in a bearer by virtue of the bearer's being combined, or impregnated, with nitric acid, or some of its compounds. + george + 2010-07-08T02:04:03Z + quality + PATO:0002217 + + nitrated + + + + + A molecular quality inhering in a bearer by virtue of the bearer's being combined, or impregnated, with nitric acid, or some of its compounds. + neurolex:http://neurolex.org/wiki/Category:Nitrated_Molecular_Quality + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's loss of myelin sheath. + george + 2010-07-08T02:08:06Z + quality + PATO:0002218 + + + For example loss of myelin sheath from a normally myelinated axon or dendrite. + demyelinated + + + + + A quality inhering in a bearer by virtue of the bearer's loss of myelin sheath. + thefreedictionary:http://www.thefreedictionary.com/demyelinated + + + + + + + + + A quality inhering in a bearer that is shaped in the form of a fan. + george + 2010-07-09T01:43:42Z + fan-like + quality + PATO:0002219 + + fan-shaped + + + + + A quality inhering in a bearer that is shaped in the form of a fan. + thefreedictionary:http://www.thefreedictionary.com/fan-shaped + + + + + + + + + + A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group. + + george + 2010-07-09T01:50:14Z + quality + PATO:0002220 + + phosphorylated + + + + + A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group. + wikipedia:en.wikipedia.org/wiki/Phosphorylated + + + + + + + + + + + + + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups. + + george + 2010-07-09T01:51:52Z + hyperphosphorylated + quality + PATO:0002221 + + increased phosphorylation + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups. + Wikipedia:http://en.wiktionary.org/wiki/hyperphosphorylated + + + + + + + + + + + + + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully. + + george + 2010-07-09T01:54:22Z + hypophosporylated + quality + PATO:0002222 + + decreased phosphorylation + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully. + Wikipedia:http://en.wiktionary.org/wiki/hypophosphorylated + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having reacted with oxygen, or been modified by oxidation (the reaction in which the atoms of an element lose electrons and the valence of the element increases). + george + 2010-07-09T01:59:35Z + quality + PATO:0002223 + + oxidized + + + + + A quality inhering in a bearer by virtue of the bearer's having reacted with oxygen, or been modified by oxidation (the reaction in which the atoms of an element lose electrons and the valence of the element increases). + Wikipedia:http://en.wiktionary.org/wiki/oxidized + + + + + + + + + An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter V. + george + 2010-07-13T04:12:13Z + quality + PATO:0002224 + + V-shaped + + + + + An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter V. + PATOC:JE + + + + + + + + + An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter L. + george + 2010-07-13T04:14:59Z + quality + PATO:0002225 + + L-shaped + + + + + An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter L. + PATOC:JE + + + + + + + + + A cylindrical shape quality inhering in a bearer by virtue of the bearer's being imperfectly cylindrical or approximately cylindrical. + george + 2010-07-13T04:22:30Z + quality + PATO:0002226 + + subcylindrical + + + + + A cylindrical shape quality inhering in a bearer by virtue of the bearer's being imperfectly cylindrical or approximately cylindrical. + url:http://www.thefreedictionary.com/Subcylindrical + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a cup. + george + 2010-07-13T04:29:32Z + cup-like + quality + PATO:0002227 + + cup-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a cup. + url:http://www.thefreedictionary.com/cup-shaped + + + + + + + + + A tapered shape quality inhering in a bearer by virtue of the bearer's tapering gradually to a sharp point. + george + 2010-07-15T09:03:18Z + quality + PATO:0002228 + + acuminate + + + + + A tapered shape quality inhering in a bearer by virtue of the bearer's tapering gradually to a sharp point. + url:http://www.thefreedictionary.com/acuminate + + + + + + + + + A quadrangular shape quality inhering in a bearer by virtue of the bearer's being approximately rectangular. + george + 2010-07-19T12:18:57Z + quality + PATO:0002229 + + subrectangular + + + + + A quadrangular shape quality inhering in a bearer by virtue of the bearer's being approximately rectangular. + url:http://dictionary.reference.com/browse/subrectangular?qsrc=2446&o=100074 + + + + + + + + + A triangular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, triangular. + george + 2010-07-19T12:20:59Z + quality + PATO:0002230 + + subtriangular + + + + + A triangular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, triangular. + url:http://www.thefreedictionary.com/Subtriangular + + + + + + + + + A split shape quality inhering in a bearer by virtue of the bearer's having or being divided into many lobes or similar segments. + george + 2010-07-19T12:23:02Z + quality + PATO:0002231 + + multifid + + + + + A split shape quality inhering in a bearer by virtue of the bearer's having or being divided into many lobes or similar segments. + url:http://www.thefreedictionary.com/multifid + + + + + + + + + A 2-D shape quality inhering in a bearer by virtue of the bearer's having shape or form of half a circle. + george + 2010-07-19T01:02:27Z + half circle + semicircle + quality + PATO:0002232 + + semicircular + + + + + A 2-D shape quality inhering in a bearer by virtue of the bearer's having shape or form of half a circle. + url:http://www.thefreedictionary.com/semicircle + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located far (not close to) in space in relation to another entity. + george + 2010-07-19T02:43:53Z + distant from + remote from + quality + PATO:0002233 + + + far from + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located far (not close to) in space in relation to another entity. + PATOC:PM + + + + + + + + + A notched shape quality inhering in a bearer by virtue of the bearer's having a notched tip or edge. + george + 2010-07-19T04:25:58Z + quality + PATO:0002234 + + emarginate + + + + + A notched shape quality inhering in a bearer by virtue of the bearer's having a notched tip or edge. + url:http://www.thefreedictionary.com/emarginate + + + + + + + + + A tapered shape quality inhering in a bearer by virtue of the bearer's being flat, slender, and tapering to a point. + george + 2010-07-19T04:29:05Z + blade-shaped + ensiform + sword-like + sword-shaped + quality + PATO:0002235 + + blade-like + + + + + A tapered shape quality inhering in a bearer by virtue of the bearer's being flat, slender, and tapering to a point. + PATOC:JE + + + + + + + + + Shape quality inhering in a bearer by virtue of the bearer's being shaped like a wing. + george + 2010-07-23T02:19:14Z + wing-shaped + quality + PATO:0002236 + + aliform + + + + + Shape quality inhering in a bearer by virtue of the bearer's being shaped like a wing. + url:http://www.thefreedictionary.com/aliform + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or downward. + george + 2010-07-23T02:22:09Z + quality + PATO:0002237 + + retrorse + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or downward. + url:http://www.thefreedictionary.com/retrorse + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved forward or upward. + george + 2010-07-23T02:22:56Z + quality + PATO:0002238 + + antrorse + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved forward or upward. + url:http://www.thefreedictionary.com/antrorse + + + + + + + + + A concave 3-D shape that inheres in the bearer by virtue of the bearer's nearly) symmetric shape wide at its ends and narrow in the middle, resembling the figure of number 8. + george + 2010-07-23T02:25:24Z + figure 8 shaped + quality + PATO:0002239 + + hourglass-shaped + + + + + A concave 3-D shape that inheres in the bearer by virtue of the bearer's nearly) symmetric shape wide at its ends and narrow in the middle, resembling the figure of number 8. + url:http://en.wikipedia.org/wiki/Hourglass-shaped + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop. + george + 2010-07-23T02:31:11Z + drop shaped + quality + PATO:0002240 + + teardrop-shaped + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop. + url:wordnetweb.princeton.edu/perl/webwn + + + + + + + + + A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having three lobes. + george + 2010-07-28T12:57:46Z + quality + PATO:0002241 + + trilobed + + + + + A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having three lobes. + url:http://www.thefreedictionary.com/trilobed + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's rate of change of the position. + george + 2010-07-28T02:52:48Z + quality + PATO:0002242 + + + velocity + + + + + A physical quality inhering in a bearer by virtue of the bearer's rate of change of the position. + url:http://en.wikipedia.org/wiki/Velocity + + + + + + + + + A physical quality inhering in a fluid (liquid or gas) by virtue of the amount of fluid which passes through a given surface per unit time. + george + 2010-07-28T03:00:20Z + volume flow rate + volumetric flow rate + quality + PATO:0002243 + + + fluid flow rate + + + + + A physical quality inhering in a fluid (liquid or gas) by virtue of the amount of fluid which passes through a given surface per unit time. + url:http://en.wikipedia.org/wiki/Volumetric_flow_rate + + + + + + + + + A flow rate quality inhering in a substance by virtue of the mass of substance which passes through a given surface per unit time. + george + 2010-07-28T03:02:03Z + quality + PATO:0002244 + + mass flow rate + + + + + A flow rate quality inhering in a substance by virtue of the mass of substance which passes through a given surface per unit time. + url:http://en.wikipedia.org/wiki/Mass_flow_rate + + + + + + + + + + + + + + + + + + + + + A force which relative high. + + george + 2010-08-04T11:12:20Z + increased force amplitude + quality + PATO:0002245 + + increased force + + + + + A force which relative high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A force which is relative low. + + george + 2010-08-04T11:13:13Z + decreased force amplitude + quality + PATO:0002246 + + decreased force + + + + + A force which is relative low. + PATOC:GVG + + + + + + + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having or lacking of substances produced by living organisms that have a color resulting from selective color absorption. + george + 2010-08-09T04:14:00Z + quality + PATO:0002247 + + + degree of pigmentation + + + + + A quality inhering in a bearer by virtue of the bearer's having or lacking of substances produced by living organisms that have a color resulting from selective color absorption. + url:http://en.wikipedia.org/wiki/Biological_pigment + + + + + + + + + + A degree of pigmentation quality inhering in a bearer by virtue of the bearer's having substances produced by living organisms that have a color resulting from selective color absorption. + + george + 2010-08-09T04:16:49Z + quality + PATO:0002248 + + + pigmented + + + + + A degree of pigmentation quality inhering in a bearer by virtue of the bearer's having substances produced by living organisms that have a color resulting from selective color absorption. + PATOC:GVG + + + + + + + + + A degree of pigmentation quality inhering in a bearer by virtue of the bearer's lacking substances produced by living organisms that have a color resulting from selective color absorption. + + george + 2010-08-09T04:17:04Z + depigmented + quality + PATO:0002249 + + + unpigmented + + + + + A degree of pigmentation quality inhering in a bearer by virtue of the bearer's lacking substances produced by living organisms that have a color resulting from selective color absorption. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A degree of pigmentation quality that is relatively high. + + george + 2010-08-09T04:17:19Z + hyperpigmented + quality + PATO:0002250 + + + increased pigmentation + + + + + A degree of pigmentation quality that is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A degree of pigmentation quality that is relative low. + + george + 2010-08-09T04:17:37Z + hypopigmented + quality + PATO:0002251 + + + decreased pigmentation + + + + + A degree of pigmentation quality that is relative low. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being flattened along the antero-posterior axis. + george + 2010-08-16T03:57:42Z + antero-posteriorly compressed + quality + PATO:0002252 + + antero-posteriorly flattened + + + + + A quality inhering in a bearer by virtue of the bearer's being flattened along the antero-posterior axis. + PATOC:JC + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being roundish, flattish shape, possibly with a slightly angled edge. + george + 2010-08-16T03:57:48Z + plate-like + quality + PATO:0002253 + + platelike + + + + + A quality inhering in a bearer by virtue of the bearer's being roundish, flattish shape, possibly with a slightly angled edge. + PATOC:CVC + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's surface becoming more extended in a plane. + george + 2010-08-16T03:59:34Z + quality + compressed + PATO:0002254 + + Becoming flat but not necessarily completely flat. + flattened + + + + + A quality inhering in a bearer by virtue of the bearer's surface becoming more extended in a plane. + PATOC:CVS + + + + + + + + + Texture quality inhering in a bearer by virtue of the bearer's being marked with one or more channels. + george + 2010-09-01T10:27:48Z + quality + channeled + creased + PATO:0002255 + + grooved + + + + + Texture quality inhering in a bearer by virtue of the bearer's being marked with one or more channels. + PATOC:JE + + + + + + + + + A cuscpidate quality inhering in a bearer by virtue of the bearer possessing three cusps. + george + 2010-09-08T02:21:50Z + tricuspid + quality + PATO:0002256 + + tricuspidate + + + + + A cuscpidate quality inhering in a bearer by virtue of the bearer possessing three cusps. + PATOC:WD + + + + + + + + + A cuscpidate quality inhering in a bearer by virtue of the bearer possessing more than one cusp. + george + 2010-09-08T02:23:22Z + quality + PATO:0002257 + + multicuspidate + + + + + A cuscpidate quality inhering in a bearer by virtue of the bearer possessing more than one cusp. + PATOC:WD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a point. + george + 2010-09-08T03:15:16Z + quality + PATO:0002258 + + pointed + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a point. + PATOC:http://www.merriam-webster.com/dictionary/pointed + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located near in space in relation to another entity. + george + 2010-09-08T03:20:06Z + PATO:0001771 + approaches + close to + near to + vicinity of + quality + PATO:0002259 + + + adjacent to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located near in space in relation to another entity. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being partially upright in position or posture. + george + 2010-09-08T03:27:21Z + semi upright + quality + PATO:0002260 + semi erect + + + + + A quality inhering in a bearer by virtue of the bearer's being partially upright in position or posture. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's location within another entity. + george + 2010-09-09T09:36:56Z + quality + PATO:0002261 + + + located in + + + + + A spatial quality inhering in a bearer by virtue of the bearer's location within another entity. + PATOC:WD + + + + + + + + + A quality inhering in a protein or a molecule by virtue of the addition of a phosphate (PO4) group to the bearer. + george + 2010-09-16T08:57:56Z + quality + PATO:0002262 + + + phosphorylation + + + + + A quality inhering in a protein or a molecule by virtue of the addition of a phosphate (PO4) group to the bearer. + url:http://en.wikipedia.org/wiki/Phosphorylation + + + + + + + + + A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group. + + george + 2010-09-16T09:04:21Z + quality + PATO:0002263 + + dephosphorylated + + + + + A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group. + url:http://en.wikipedia.org/wiki/Dephosphorylation + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being arranged in a systematic fashion. + george + 2010-09-16T10:22:52Z + quality + PATO:0002264 + + organization quality + + + + + A structural quality inhering in a bearer by virtue of the bearer's being arranged in a systematic fashion. + PATOC:GVG + + + + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's disposition to exhibit marked activity. + george + 2010-09-21T06:56:58Z + quality + PATO:0002265 + + + + behavioural activity + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's disposition to exhibit marked activity. + PATOC:GVG + + + + + + + + + A shape that inheres in a 3 dimensional entity. + george + 2010-10-05T12:31:16Z + quality + PATO:0002266 + 3-D shape + + + + + A shape that inheres in a 3 dimensional entity. + PATOC:OREGON + + + + + + + + + george + 2010-10-05T12:34:31Z + quality + PATO:0002267 + edge shape + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being located in a position equidistant from edges. + george + 2010-10-05T01:09:32Z + quality + PATO:0002268 + + centered + + + + + A positional quality inhering in a bearer by virtue of the bearer's being located in a position equidistant from edges. + PATOC:OREGON + + + + + + + + + A structural quality of the collection or massing of one physical object within another physical object. + george + 2010-10-26T01:57:02Z + quality + pooled + PATO:0002269 + + + + accumulation + + + + + A structural quality of the collection or massing of one physical object within another physical object. + PATOC:CVC + + + + + + + + + An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner. + + george + 2010-10-26T02:00:20Z + accumulated + quality + PATO:0002270 + + + increased accumulation + + + + + An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner. + PATOC:GVG + + + + + + + + + An accumulation which is relative low. + + george + 2010-10-26T02:04:45Z + quality + PATO:0002271 + + + decreased accumulation + + + + + An accumulation which is relative low. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located at the same continuous distance relative to another object. + george + 2010-10-26T02:07:42Z + quality + PATO:0002272 + + + parallel to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located at the same continuous distance relative to another object. + PATOC:WD + + + + + + + + + Multicolored quality inhering in a bearer by virtue of the bearer's being colored with a variegated pattern resembling marble,. + george + 2010-11-16T11:17:32Z + quality + PATO:0002273 + + marbled + + + + + Multicolored quality inhering in a bearer by virtue of the bearer's being colored with a variegated pattern resembling marble,. + url:http://www.oed.com/ + + + + + + + + + Multicolored quality inhering in a bearer by virtue of the bearer's being dappled with spots, patches, or blotches of different colors. + george + 2010-11-16T11:22:57Z + quality + PATO:0002274 + + mottled + + + + + Multicolored quality inhering in a bearer by virtue of the bearer's being dappled with spots, patches, or blotches of different colors. + url:http://www.oed.com/ + + + + + + + + + A color pattern quality inhering in a bearer by virtue of the bearer's color pattern in which light and dark colors (for example white and black) are codistributed to create a visual impression. + george + 2010-11-16T11:24:15Z + quality + PATO:0002275 + + high contrast color pattern + + + + + A color pattern quality inhering in a bearer by virtue of the bearer's color pattern in which light and dark colors (for example white and black) are codistributed to create a visual impression. + PATOC:WD + + + + + + + + + A color pattern inhering in a bearer by virtue of bearer's exhibiting vertical bars of one hue or degree of saturation crossing another. + george + 2010-11-16T11:30:40Z + quality + PATO:0002276 + + barred + + + + + A color pattern inhering in a bearer by virtue of bearer's exhibiting vertical bars of one hue or degree of saturation crossing another. + PATOC:WD + + + + + + + + + A quality of certain surfaces which appear to change colour as the angle of view changes. + george + 2010-12-12T12:37:41Z + quality + PATO:0002277 + iridescent + + + + + A quality of certain surfaces which appear to change colour as the angle of view changes. + url:http://en.wikipedia.org/wiki/Iridescence + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's participating in a joint with another entity. + george + 2011-01-20T05:39:18Z + quality + PATO:0002278 + + articulated with + + + + + A structural quality inhering in a bearer by virtue of the bearer's participating in a joint with another entity. + PATOC:WD + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being strongly articulated with another entity. + george + 2011-01-20T05:39:59Z + quality + PATO:0002279 + + tightly articulated with + + + + + A structural quality inhering in a bearer by virtue of the bearer's being strongly articulated with another entity. + PATOC:WD + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's possessing a broad surface in articulation with another entity. + george + 2011-01-20T05:40:29Z + quality + PATO:0002280 + + broadly articulated with + + + + + A structural quality inhering in a bearer by virtue of the bearer's possessing a broad surface in articulation with another entity. + PATOC:WD + + + + + + + + + A cuscpidate quality inhering in a bearer by virtue of the bearer possessing two cusps. + george + 2011-02-07T03:13:18Z + bicuspid + quality + PATO:0002281 + biscupidate + + + + + A cuscpidate quality inhering in a bearer by virtue of the bearer possessing two cusps. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A mobility which is relative high. + + george + 2011-03-09T09:16:03Z + quality + PATO:0002282 + + increased mobility + + + + + A mobility which is relative high. + PATO:GVG + + + + + + + + + + + + + + + + + + + + + A mobility which is relative low. + + george + 2011-03-09T09:16:47Z + quality + PATO:0002283 + + decreased mobility + + + + + A mobility which is relative low. + PATOC:GVG + + + + + + + + + A physical quality that pertains by virtue of a pulling force that is directed away from the bearer and attempts to stretch or elongate the bearer. + george + 2011-03-10T08:41:21Z + quality + PATO:0002284 + + + tension + + + + + A physical quality that pertains by virtue of a pulling force that is directed away from the bearer and attempts to stretch or elongate the bearer. + PATOC:GVG + + + + + + + + + Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity. + + george + 2011-03-10T09:07:57Z + quality + PATO:0002285 + + increased branchiness + + + + + Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity. + PATOC:CVS + + + + + + + + + Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity. + + george + 2011-03-10T09:08:37Z + quality + PATO:0002286 + + decreased branchiness + + + + + Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity. + PATOC:CVS + + + + + + + + + + + + + + + + + + + + + An elasticity which is relatively high. + + George Gkoutos + 2011-03-30T11:50:21Z + quality + PATO:0002287 + + increased elasticity + + + + + An elasticity which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An elasticity which is relatively low. + + George Gkoutos + 2011-03-30T11:50:39Z + quality + PATO:0002288 + + decreased elasticity + + + + + An elasticity which is relatively low. + PATOC:GVG + + + + + + + + + A hairy quality inhering in a bearer by virtue of the bearer's being covered with setae. + George Gkoutos + 2011-04-04T08:44:10Z + quality + PATO:0002289 + + Setose as a label is used extensively to describe insect phenotypes that have hairy-like appearances (i.e., they are covered in setae, not the hairs of mammals). A bristle is a type of seta. + setose + + + + + A hairy quality inhering in a bearer by virtue of the bearer's being covered with setae. + ISBN:0913424137 + + + + + + + + + George Gkoutos + 2011-04-18T05:11:33Z + quality + PATO:0002290 + aplastic/hypoplastic + + + + + + + + + Absence of a tissue or organ due to failure to develop. + George Gkoutos + 2011-04-18T05:17:34Z + quality + PATO:0002291 + agenesis + + + + + Absence of a tissue or organ due to failure to develop. + PATO:GVG + + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's underlying structure being capable of change. + George Gkoutos + 2011-05-03T03:01:59Z + transient structure + quality + PATO:0002292 + For example, structures undergoing endochondral ossification change in composition from cartilaginous to ossified. + transient + + + + + A structural quality inhering in a bearer by virtue of the bearer's underlying structure being capable of change. + PATOC:WD + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's underlying structure not changing over time. + George Gkoutos + 2011-05-03T03:03:50Z + permanent structure + quality + PATO:0002293 + permanent + + + + + A structural quality inhering in a bearer by virtue of the bearer's underlying structure not changing over time. + PATOC:WD + + + + + + + + + A texture that is uniformly covered in short, oblong, or trench-like depressions. + George Gkoutos + 2011-05-03T03:12:47Z + quality + PATO:0002294 + scrobiculate + + + + + A texture that is uniformly covered in short, oblong, or trench-like depressions. + Book:Book + + + + + + + + + A surface feature shape inhering in a surface by virtue of the bearer's being divided by ridge-like structures into a number of small, irregular spaces. + George Gkoutos + 2011-05-17T07:57:45Z + quality + PATO:0002295 + + areolate + + + + + A surface feature shape inhering in a surface by virtue of the bearer's being divided by ridge-like structures into a number of small, irregular spaces. + Book:Book + + + + + + + + + A texture quality inhering in a surface by virtue of the bearer's being marked by the presence of small, shallow, regular depressions called fovae. + George Gkoutos + 2011-05-17T07:59:30Z + quality + foveolate + pitted + PATO:0002296 + + foveate + + + + + A texture quality inhering in a surface by virtue of the bearer's being marked by the presence of small, shallow, regular depressions called fovae. + Book:Book + + + + + + + + + + + + + + + + + + + + + A cellular motility which is lower relative to the normal or average. + + quality + PATO:0002297 + + decreased cellular motility + + + + + A cellular motility which is lower relative to the normal or average. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A cellular motility which is higher relative to the normal or average. + + quality + PATO:0002298 + + increased cellular motility + + + + + A cellular motility which is higher relative to the normal or average. + PATOC:GVG + + + + + + + + + + A cylindrical shape that is hollow. + George Gkoutos + 2011-06-08T06:33:50Z + tube like + tube-shaped + tubulate + quality + PATO:0002299 + tubular + + + + + A cylindrical shape that is hollow. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + + + + + + A quality that has a value that is increased compared to normal or average. + + George Gkoutos + 2011-06-16T06:39:43Z + quality + PATO:0002300 + increased quality + + + + + A quality that has a value that is increased compared to normal or average. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + + + + + + A quality that has a value that is decreased compared to normal or average. + + George Gkoutos + 2011-06-16T06:40:15Z + quality + PATO:0002301 + decreased quality + + + + + A quality that has a value that is decreased compared to normal or average. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A quality of a process that has a value that is decreased compared to normal or average. + + George Gkoutos + 2011-06-16T06:50:59Z + quality + PATO:0002302 + decreased process quality + + + + + A quality of a process that has a value that is decreased compared to normal or average. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A quality of an object that has a value that is decreased compared to normal or average. + + George Gkoutos + 2011-06-16T06:51:54Z + quality + PATO:0002303 + decreased object quality + + + + + A quality of an object that has a value that is decreased compared to normal or average. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A quality of a process that has a value that is increased compared to normal or average. + + George Gkoutos + 2011-06-16T06:53:08Z + quality + PATO:0002304 + increased process quality + + + + + A quality of a process that has a value that is increased compared to normal or average. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A quality of an object that has a value that is increased compared to normal or average. + + George Gkoutos + 2011-06-16T06:54:01Z + quality + PATO:0002305 + increased object quality + + + + + A quality of an object that has a value that is increased compared to normal or average. + PATOC:GVG + + + + + + + + + + + A triangular quality inhering in a bearer by virtue of the bearer's having all sides of the same length. + George Gkoutos + 2011-06-27T11:22:50Z + quality + PATO:0002306 + + equilateral triangular + + + + + A triangular quality inhering in a bearer by virtue of the bearer's having all sides of the same length. + PATOC:JB + + + + + + + + + + A triangular quality inhering in a bearer by virtue of the bearer's having two sides have the same length. + George Gkoutos + 2011-06-27T11:23:52Z + quality + PATO:0002307 + + isosceles triangular + + + + + A triangular quality inhering in a bearer by virtue of the bearer's having two sides have the same length. + PATOC:JB + + + + + + + + + A triangular quality inhering in a bearer by virtue of the bearer's having all sides of unequal length. + George Gkoutos + 2011-06-27T11:24:24Z + quality + PATO:0002308 + + scalene triangular + + + + + A triangular quality inhering in a bearer by virtue of the bearer's having all sides of unequal length. + PATOC:JB + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a by virtue of the bearer's exhibiting a consistently sized and approximately round cross-section along its length, which is many times larger than its diameter. + George Gkoutos + 2011-09-09T04:50:10Z + quality + PATO:0002309 + + Note that a fiber shaped object may take any circuitous or straight path through space (think of a length of string or rope). + fiber shaped + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a by virtue of the bearer's exhibiting a consistently sized and approximately round cross-section along its length, which is many times larger than its diameter. + PATOC:DC + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being strong, thick or sturdy. + George Gkoutos + 2011-09-20T06:23:31Z + quality + PATO:0002310 + + robust + + + + + A quality inhering in a bearer by virtue of the bearer's being strong, thick or sturdy. + PATOC:BF + + + + + + + + + Having a fringe or border of hairlike or fingerlike projections. + George Gkoutos + 2011-09-22T03:52:11Z + quality + PATO:0002311 + + fimbriated + + + + + Having a fringe or border of hairlike or fingerlike projections. + PATO:WS + + + + + + + + + Consisting of segments or similar parts arranged in a longitudinal series. + George Gkoutos + 2011-10-03T03:42:23Z + quality + PATO:0002312 + + + segmented + + + + + Consisting of segments or similar parts arranged in a longitudinal series. + OED: + + + + + + + + + Having or resembling the shape of a telescope. + George Gkoutos + 2011-10-03T03:49:26Z + quality + PATO:0002313 + + telescopic + + + + + Having or resembling the shape of a telescope. + PATOC:BF + + + + + + + + + Having the nature or characteristic of, a ligament; composed of the tissue proper to ligaments. + George Gkoutos + 2011-10-03T03:57:39Z + quality + PATO:0002314 + + ligamentous + + + + + Having the nature or characteristic of, a ligament; composed of the tissue proper to ligaments. + PATOC:BF + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's resembling the end of a brush with a multitude of bristles. + George Gkoutos + 2011-10-03T03:59:59Z + quality + PATO:0002315 + + brush-like shape + + + + + A shape quality inhering in a bearer by virtue of the bearer's resembling the end of a brush with a multitude of bristles. + PATOC:BF + + + + + + + + + Being separate or discrete from other skeletal elements. + George Gkoutos + 2011-10-03T04:17:08Z + quality + free + PATO:0002316 + + autogenous + + + + + Being separate or discrete from other skeletal elements. + PATOC:WD + + + + + + + + + A convex quadrilateral is a parallelogram if and only if any one of the following statements are true: +1. Each diagonal divides the quadrilateral into two congruent triangles with the same orientation. +2. The opposite sides are congruent in pairs. +3. The diagonals bisect each other. +4. The opposite angles are congruent in pairs. +5. The sum of the squares of the sides equals the sum of the squares of the diagonals. (This is the parallelogram law) +6.It possesses rotational symmetry. +7.One pair of opposite sides are parallel and congruent. +8.Two pairs of adjacent angles are supplementary. + George Gkoutos + 2011-10-12T12:33:07Z + quality + PATO:0002317 + + parallelogram + + + + + A convex quadrilateral is a parallelogram if and only if any one of the following statements are true: +1. Each diagonal divides the quadrilateral into two congruent triangles with the same orientation. +2. The opposite sides are congruent in pairs. +3. The diagonals bisect each other. +4. The opposite angles are congruent in pairs. +5. The sum of the squares of the sides equals the sum of the squares of the diagonals. (This is the parallelogram law) +6.It possesses rotational symmetry. +7.One pair of opposite sides are parallel and congruent. +8.Two pairs of adjacent angles are supplementary. + wikipedia:Parallelogram + + + + + + + + + A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt + George Gkoutos + 2011-10-12T12:45:16Z + Lamé curve + quality + PATO:0002318 + superelliptic + + + + + A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt + wiktionary:superellipse + + + + + + + + + A shape with properties between those of a square and those of a circle. + George Gkoutos + 2011-10-12T12:47:48Z + quality + PATO:0002319 + + squircle + + + + + A shape with properties between those of a square and those of a circle. + wikipedia:Squircle + + + + + + + + + A superelptic shape inhering in a bearer by virtue of the bearer's shape resembling a diamond. + George Gkoutos + 2011-10-12T12:49:06Z + quality + PATO:0002320 + + diamond shaped + + + + + A superelptic shape inhering in a bearer by virtue of the bearer's shape resembling a diamond. + PATO:WC + + + + + + + + + + George Gkoutos + 2011-10-12T12:50:59Z + quality + PATO:0002321 + hypoelliptic + + + + + + + + + + George Gkoutos + 2011-10-12T12:51:19Z + quality + PATO:0002322 + hyperelliptic + + + + + + + + + A temporal distribution pattern of process occurrences within a regulation/reference process. + George Gkoutos + 2011-11-22T01:12:28Z + quality + PATO:0002323 + + temporal distribution quality + + + + + A temporal distribution pattern of process occurrences within a regulation/reference process. + PATOC:LC + + + + + + + + + The temporal relation between the end of the process with respect to a reference process. + George Gkoutos + 2011-11-23T11:46:00Z + quality + completeness + extent + PATO:0002324 + + offset quality + + + + + The temporal relation between the end of the process with respect to a reference process. + PATOC:LC + + + + + completeness + GOC:CJM + + + + + extent + GOC:CJM + + + + + + + + + The temporal relation between the start of the process with respect to a reference process. + George Gkoutos + 2011-11-23T11:47:34Z + quality + initiation + PATO:0002325 + + onset quality + + + + + The temporal relation between the start of the process with respect to a reference process. + PATOC:LC + + + + + + + + + An orientation inhering in a bearer by virtue of the bearer's placement at an angle. + George Gkoutos + 2011-11-23T12:06:09Z + quality + PATO:0002326 + + + angle + + + + + An orientation inhering in a bearer by virtue of the bearer's placement at an angle. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An angle which is relatively high. + + George Gkoutos + 2011-11-23T12:06:38Z + quality + PATO:0002327 + + + increased angle to + + + + + An angle which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + An angle which is relatively low. + + George Gkoutos + 2011-11-23T12:06:54Z + quality + PATO:0002328 + + + decreased angle to + + + + + An angle which is relatively low. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's exhibiting a upward bending of its leaves or other plant parts. + gkoutos + 2012-01-31T11:40:23Z + quality + PATO:0002329 + + hyponastic + + + + + A shape quality inhering in a bearer by virtue of the bearer's exhibiting a upward bending of its leaves or other plant parts. + PATOC:DS + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being extended along a straight line, and is shaped like a reversed lance-point, with the tapering point attached to the leafstalk. + gkoutos + 2012-01-31T11:57:54Z + quality + PATO:0002330 + + oblanceolate + + + + + A quality inhering in a bearer by virtue of the bearer's being extended along a straight line, and is shaped like a reversed lance-point, with the tapering point attached to the leafstalk. + PATOC:PG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact. + + gkoutos + 2012-01-31T12:28:16Z + quality + resinous + PATO:0002331 + + adhesive + + + + + A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact. + + gkoutos + 2012-01-31T12:28:57Z + quality + non-resinous + PATO:0002332 + + non-adhesive + + + + + A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A adhesivity which is relatively high. + + gkoutos + 2012-01-31T12:32:43Z + quality + PATO:0002333 + + increased adhesivity + + + + + A adhesivity which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A adhesivity which is relatively low. + + gkoutos + 2012-01-31T12:42:22Z + quality + PATO:0002334 + decreased adhesivity + + + + + A adhesivity which is relatively low. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being dome-shaped. + gkoutos + 2012-01-31T02:32:14Z + quality + PATO:0002335 + + tholiform + + + + + A shape quality inhering in a bearer by virtue of the bearer's being dome-shaped. + PATOC:dd + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having triangular faces that meet at a common point and containing a polygonal shaped base. + gkoutos + 2012-01-31T02:35:02Z + quality + PATO:0002336 + + pyramidal + + + + + A shape quality inhering in a bearer by virtue of the bearer's having triangular faces that meet at a common point and containing a polygonal shaped base. + PATOC:DD + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; characterized with an egg-shaped form crossed with a lance-head shaped form. + gkoutos + 2012-01-31T02:43:15Z + quality + PATO:0002337 + + lance-ovate + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; characterized with an egg-shaped form crossed with a lance-head shaped form. + PATOC:DD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle together forming three angles; attached at the broad end. + gkoutos + 2012-01-31T02:46:43Z + quality + PATO:0002338 + + lanceolate-triangular + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle together forming three angles; attached at the broad end. + PATOC:DD + + + + + + + + + A quality of being covered with stiff or rough hairs. + gkoutos + 2012-01-31T02:51:37Z + quality + PATO:0002339 + + hispid + + + + + A quality of being covered with stiff or rough hairs. + PATOC:GVG + + + + + + + + + A quality of being minutely hispid. + gkoutos + 2012-01-31T02:53:21Z + quality + PATO:0002340 + + hispidulous + + + + + A quality of being minutely hispid. + PATOC:DD + + + + + + + + + A quality of being covered with short, dense, matted hairs. + gkoutos + 2012-01-31T02:55:56Z + quality + PATO:0002341 + + tomentose + + + + + A quality of being covered with short, dense, matted hairs. + thefreedictionary:www.thefreedictionary.com + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being a cupule, with a structure similar to a cup that also encloses the ovule in partiality. + gkoutos + 2012-01-31T02:59:07Z + quality + PATO:0002342 + + cupulate + + + + + A quality inhering in a bearer by virtue of the bearer's being a cupule, with a structure similar to a cup that also encloses the ovule in partiality. + PATOC:DD + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's lying or growing on the ground but with erect or rising tips. + gkoutos + 2012-01-31T03:13:12Z + quality + PATO:0002343 + + decumbent + + + + + A positional quality inhering in a bearer by virtue of the bearer's lying or growing on the ground but with erect or rising tips. + thefreedictionary:www.thefreedictionary.com + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being characterized by fine, entangled hairs giving the appearance of cobweb. + gkoutos + 2012-01-31T03:49:00Z + quality + PATO:0002344 + + arachnose + + + + + A quality inhering in a bearer by virtue of the bearer's being characterized by fine, entangled hairs giving the appearance of cobweb. + PATOC:DD + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc + gkoutos + 2012-01-31T03:55:16Z + quality + PATO:0002345 + + lemon-shaped + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc + PATOC:MH + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two connected parts, roughly spherical, of different sizes. + gkoutos + 2012-01-31T03:58:10Z + quality + PATO:0002346 + + snowman-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two connected parts, roughly spherical, of different sizes. + PATOC:MH + + + + + + + + + A conical quality inhering in a bearer by virtue of the bearer's resembling a cone, with the pointed end attached to an organism. + gkoutos + 2012-01-31T04:05:28Z + quality + PATO:0002347 + + obconical + + + + + A conical quality inhering in a bearer by virtue of the bearer's resembling a cone, with the pointed end attached to an organism. + wiktionary:http://en.wiktionary.org/wiki/obconical + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer resembling wood. + gkoutos + 2012-01-31T04:06:50Z + quality + PATO:0002348 + + ligneous + + + + + A structural quality inhering in a bearer by virtue of the bearer resembling wood. + merriam-webster:http://www.merriam-webster.com/dictionary/ligneous + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the base of an organism relative to another entity. + gkoutos + 2012-01-31T04:12:25Z + quality + PATO:0002349 + + basal to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the base of an organism relative to another entity. + merriam-webster:http://www.merriam-webster.com/dictionary/basal + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the stalk of an organism relative to another entity. + gkoutos + 2012-01-31T04:13:06Z + quality + PATO:0002350 + + cauline to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the stalk of an organism relative to another entity. + merriam-webster:http://www.merriam-webster.com/dictionary/cauline + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer resembling or containing flesh. + gkoutos + 2012-01-31T04:15:30Z + quality + PATO:0002351 + + fleshy + + + + + A structural quality inhering in a bearer by virtue of the bearer resembling or containing flesh. + wiktionary:http://en.wiktionary.org/wiki/fleshy + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's upper parts die back to the rootstock at the end of the growing season. + gkoutos + 2012-01-31T04:29:36Z + quality + PATO:0002352 + + herbaceous + + + + + A quality inhering in a bearer by virtue of the bearer's upper parts die back to the rootstock at the end of the growing season. + PATOC:PG + + + + + + + + + A quality that inheres in a bearer in virtue of its realizing one of its functions. + gkoutos + 2012-01-31T04:51:42Z + quality + PATO:0002353 + + activation quality + + + + + A quality that inheres in a bearer in virtue of its realizing one of its functions. + PATOC:RH + + + + + + + + + A quality of an physical object that is currently realizing one of its functions. + + gkoutos + 2012-01-31T04:52:04Z + quality + PATO:0002354 + + active + + + + + A quality of an physical object that is currently realizing one of its functions. + PATOC:RH + + + + + + + + + A quality of a physical object that is currently realizing none of its functions. + + gkoutos + 2012-01-31T04:52:14Z + quality + PATO:0002355 + + inactive + + + + + A quality of a physical object that is currently realizing none of its functions. + PATOC:RH + + + + + + + + + A quality of a physical object that has been constantly realizing some of its functions. + gkoutos + 2012-01-31T04:52:24Z + quality + PATO:0002356 + + constitutively active + + + + + A quality of a physical object that has been constantly realizing some of its functions. + PATOC:RH + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a strait side and an arched side giving the bearer the form of the letter D. + gkoutos + 2012-02-21T11:46:51Z + quality + PATO:0002357 + + D-shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a strait side and an arched side giving the bearer the form of the letter D. + PATOC:AE + + + + + + + + + An elongated raised margin or border. + gkoutos + 2012-02-21T12:27:39Z + ridge-like + quality + PATO:0002358 + + ridged + + + + + An elongated raised margin or border. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's width being notably higher than its length. + gkoutos + 2012-03-13T06:04:00Z + quality + PATO:0002359 + + broad + + + + + A quality inhering in a bearer by virtue of the bearer's width being notably higher than its length. + PATOC:GVG + + + + + + + + + A disposition that can be compared on a linear scale - that is that it can be increased or decreased. + gkoutos + 2012-03-16T06:31:50Z + quality + PATO:0002360 + + + + tendency + + + + + A disposition that can be compared on a linear scale - that is that it can be increased or decreased. + PATOC:RH + + + + + + + + + + + + + + + + + + + + + A tendency which is relatively high. + + gkoutos + 2012-03-16T06:31:57Z + quality + PATO:0002361 + + + + increased tendency + + + + + A tendency which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A tendency which is relatively low. + + gkoutos + 2012-03-16T06:32:57Z + quality + PATO:0002362 + + + + decreased tendency + + + + + A tendency which is relatively low. + PATOC:GVG + + + + + + + + + A medium brown color with a metallic sheen, resembles the actual alloy bronze. + gkoutos + 2012-05-03T11:08:18Z + quality + PATO:0002363 + + bronze + + + + + A medium brown color with a metallic sheen, resembles the actual alloy bronze. + PATO:LC + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width. + + gkoutos + 2012-04-18T06:31:29Z + quality + PATO:0002364 + + shortened + + + + + A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width. + PATOC:GVG + + + + + + + + + Female quality of having complete, unaltered reproductive organs + gkoutos + 2012-05-03T11:18:41Z + quality + PATO:0002365 + + intact female + + + + + Female quality of having complete, unaltered reproductive organs + PATOC:MF + + + + + + + + + Male quality of having complete, unaltered reproductive organs. + gkoutos + 2012-05-03T11:19:06Z + quality + PATO:0002366 + + intact male + + + + + Male quality of having complete, unaltered reproductive organs. + PATOC:MF + + + + + + + + + Male quality of being incapable to reproduce because of functional loss of the testicles from surgical removal or chemical means. + gkoutos + 2012-05-03T11:22:29Z + quality + PATO:0002367 + + castrated male + + + + + Male quality of being incapable to reproduce because of functional loss of the testicles from surgical removal or chemical means. + PATOC:MF + + + + + + + + + A viviparous organism having never given birth. + gkoutos + 2012-05-03T11:25:25Z + quality + PATO:0002368 + + nulliparous + + + + + A viviparous organism having never given birth. + PATOC:mf + + + + + + + + + A viviparous organism that has given birth two or more times. + gkoutos + 2012-05-03T11:26:34Z + quality + PATO:0002369 + + multiparous + + + + + A viviparous organism that has given birth two or more times. + wiki:http://en.wikipedia.org/wiki/Parity_(biology) + + + + + + + + + The number of time that a viviparous organism has given birth. + gkoutos + 2012-05-03T11:27:56Z + quality + PATO:0002370 + + parity + + + + + The number of time that a viviparous organism has given birth. + wiki:http://en.wikipedia.org/wiki/Parity_(biology) + + + + + + + + + A viviparous organism having given birth one time. + gkoutos + 2012-05-03T11:29:38Z + quality + PATO:0002371 + + primiparous + + + + + A viviparous organism having given birth one time. + wiki:http://en.wikipedia.org/wiki/Parity_(biology) + + + + + + + + + A viviparous organism that has given birth five or more times. + gkoutos + 2012-05-03T11:30:28Z + quality + PATO:0002372 + + grand multi[arous + + + + + A viviparous organism that has given birth five or more times. + wiki:http://en.wikipedia.org/wiki/Parity_(biology) + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the mediolateral axis. + gkoutos + 2012-07-05T01:49:04Z + quality + PATO:0002373 + + mediolateral polarity + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the mediolateral axis. + PATOC:DS + + + + + + + + + Recurrent and often more or less cyclic alteration. + gkoutos + 2012-07-05T01:52:36Z + quality + PATO:0002374 + + fluctuating + + + + + Recurrent and often more or less cyclic alteration. + PATOC:DS + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a trumpet. + gkoutos + 2012-07-05T02:45:17Z + quality + PATO:0002375 + + trumpet-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a trumpet. + PATOC:DS + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's being filled with air. + + gkoutos + 2012-07-05T02:55:10Z + air-filled + quality + PATO:0002376 + + inflated + + + + + A structure quality inhering in a bearer by virtue of the bearer's being filled with air. + PATOC:CVS + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's being not filed with air. + + gkoutos + 2012-07-05T02:56:07Z + quality + PATO:0002377 + + uninflated + + + + + A structure quality inhering in a bearer by virtue of the bearer's being not filed with air. + PATOC:CVS + + + + + + + + + Having a shape that resembles a many-lobed "berry," such as a raspberry. + gkoutos + 2012-07-05T02:58:05Z + quality + PATO:0002378 + + + acinus + + + + + Having a shape that resembles a many-lobed "berry," such as a raspberry. + wikipedia:https://en.wikipedia.org/wiki/Acinus + + + + + + + + + A female fertility quality inhering in a female by virtue of the bearer's not being capable of reproducing because of surgical removal of ovaries and uterus. + gkoutos + 2012-07-05T03:04:28Z + quality + PATO:0002379 + + ovariohysterectomized female + + + + + A female fertility quality inhering in a female by virtue of the bearer's not being capable of reproducing because of surgical removal of ovaries and uterus. + PATOC:MF + + + + + + + + + A female fertility quality inhering in a female by virtue of the bearer's not being capable of reproducing because of surgical removal of ovaries. + gkoutos + 2012-07-05T03:06:12Z + quality + PATO:0002380 + + ovariectomized female + + + + + A female fertility quality inhering in a female by virtue of the bearer's not being capable of reproducing because of surgical removal of ovaries. + PATOC:MF + + + + + + + + + A composition quality inhering in an bearer by virtue of the presence of long chain aliphatic lipids on the surface of an organism. + gkoutos + 2012-07-05T03:17:00Z + quality + PATO:0002381 + + waxiness + + + + + A composition quality inhering in an bearer by virtue of the presence of long chain aliphatic lipids on the surface of an organism. + PATOC:lm + + + + + + + + + + + + + + + + + + + + + A waxiness which is relatively high. + + gkoutos + 2012-07-05T03:18:03Z + quality + PATO:0002382 + + increased waxiness + + + + + A waxiness which is relatively high. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A waxiness which is relatively low. + + gkoutos + 2012-07-05T03:18:14Z + quality + PATO:0002383 + decreased waxiness + + + + + + + + + Presence of long chain aliphatic lipids on the surface of an organism. + gkoutos + 2012-07-05T03:18:21Z + quality + PATO:0002384 + + + waxy + + + + + Presence of long chain aliphatic lipids on the surface of an organism. + PATOC:lm + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines, usually parallel, with at least one salient angle on the margin + gkoutos + 2012-07-05T05:17:07Z + quality + PATO:0002385 + + striate-angular + + + + + A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines, usually parallel, with at least one salient angle on the margin + FNA:FNA + + + + + + + + + A concave 3-D shape that inheres in the bearer by virtue of the bearer's shape that is wider at one end and narrow in the middle. + gkoutos + 2012-07-23T03:13:41Z + anvil shaped + quality + PATO:0002386 + anvil + + + + + A concave 3-D shape that inheres in the bearer by virtue of the bearer's shape that is wider at one end and narrow in the middle. + PATOC:AD + + + + + + + + + Extremely acute and aggressive onset of a pathological process. + gkoutos + 2012-09-15T02:57:46Z + per-acute + quality + PATO:0002387 + + + peracute + + + + + Extremely acute and aggressive onset of a pathological process. + PATOC:PNS + + + + + + + + + Being supported by a peduncle or stalk. + gkoutos + 2012-10-12T01:10:41Z + quality + PATO:0002388 + + + pedunculate + + + + + Being supported by a peduncle or stalk. + PATOC:GV + + + + + + + + + Growing horizontal to the ground without setting roots. + gkoutos + 2012-10-12T01:33:50Z + quality + PATO:0002389 + + procumbent + + + + + Growing horizontal to the ground without setting roots. + PATO:PG + + + + + + + + + A length quality which is equal to the length of any straight line segment that passes from the center of a circle to any endpoint on the circular boundary. The radius is half of the diameter. + gkoutos + 2012-11-15T05:17:15Z + quality + PATO:0002390 + + + radius + + + + + A length quality which is equal to the length of any straight line segment that passes from the center of a circle to any endpoint on the circular boundary. The radius is half of the diameter. + PATO:DS + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having three rays or radiating branches. + gkoutos + 2012-11-15T05:19:32Z + quality + PATO:0002391 + + triradiate + + + + + A shape quality inhering in a bearer by virtue of the bearer's having three rays or radiating branches. + merriam-webster:merriam-webster + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located on a sloping line joining two nonconsecutive points of an entity relative to another entity. + gkoutos + 2012-11-15T05:21:51Z + quality + PATO:0002392 + + + diagonal to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located on a sloping line joining two nonconsecutive points of an entity relative to another entity. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus. + + gkoutos + 2012-11-15T05:32:07Z + quality + PATO:0002393 + + + increased tolerance to + + + + + A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus. + PATOC:LC + + + + + + + + + + + + + + + + + + + + + A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus. + + gkoutos + 2012-11-15T05:33:05Z + quality + PATO:0002394 + + + decreased tolerance to + + + + + A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus. + PATOC:LC + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned away from the axis of an organism. + gkoutos + 2012-11-20T04:13:32Z + quality + PATO:0002395 + + mislocalized abaxially + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned away from the axis of an organism. + PATOC:EH + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the axis of an organism. + gkoutos + 2012-11-20T04:15:12Z + quality + PATO:0002396 + + mislocalized adaxially + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the axis of an organism. + PATOC:EH + + + + + + + + + A circular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, circular. + gkoutos + 2012-12-07T05:32:18Z + quality + round + rounded + PATO:0002397 + + subcircular + + + + + A circular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, circular. + PATOC:AD + + + + + + + + + gkoutos + 2012-12-07T05:34:16Z + quality + PATO:0002398 + obsolete <new term> + true + + + + + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the front and the middle of an organism. + gkoutos + 2012-12-07T05:41:01Z + quality + PATO:0002399 + + + anteromedially rotated + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the front and the middle of an organism. + PATOC:JI + + + + + + + + + Having a spindle-like shape that is wide in the middle and tapers at both ends. + gkoutos + 2012-12-07T05:43:25Z + quality + PATO:0002400 + + + fusiform + + + + + Having a spindle-like shape that is wide in the middle and tapers at both ends. + wikipedia:wikipedia + + + + + + + + + characterised by an unidentifiable pattern. + gkoutos + 2012-12-17T10:37:55Z + quality + PATO:0002401 + + + random pattern + + + + + characterised by an unidentifiable pattern. + PATOC:MPATH + + + + + + + + + Multiple lesions some interconnecting with each other. + gkoutos + 2012-12-17T10:40:18Z + quality + PATO:0002402 + + + multifocal to coalescing + + + + + Multiple lesions some interconnecting with each other. + PATOC:MPATH + + + + + + + + + Affecting all regions without specificity of distribution. + gkoutos + 2012-12-17T10:41:37Z + generalised + quality + PATO:0002403 + + + + generalized + + + + + Affecting all regions without specificity of distribution. + PATOC:MPTH + + + + + + + + + Affecting a segment or segments. + gkoutos + 2012-12-17T10:43:13Z + quality + PATO:0002404 + + + segmental + + + + + Affecting a segment or segments. + PATOC:MPATH + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to be reduced to smaller pieces with little effort. + gkoutos + 2012-12-17T10:47:16Z + quality + PATO:0002405 + + + friability + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to be reduced to smaller pieces with little effort. + Wikipedia:https://en.wikipedia.org/wiki/Friability + + + + + + + + + Easily reduced to powder or easily fragmentable or crumbly. + gkoutos + 2012-12-17T10:48:30Z + quality + PATO:0002406 + + + friable + + + + + Easily reduced to powder or easily fragmentable or crumbly. + PATOC:MPATH + + + + + + + + + Having become firm or hard especially by increase of fibrous elements. + gkoutos + 2012-12-17T10:49:11Z + quality + PATO:0002407 + + + indurated + + + + + Having become firm or hard especially by increase of fibrous elements. + mw:http://www.merriam-webster.com/dictionary/indurated + + + + + + + + + Having the consistency of water. + gkoutos + 2012-12-17T10:51:32Z + quality + PATO:0002408 + + + watery + + + + + Having the consistency of water. + PATOC:MPATH + + + + + + + + + Bounded structure filled with fluid. + gkoutos + 2012-12-17T10:53:18Z + quality + PATO:0002409 + + + fluid-filled + + + + + Bounded structure filled with fluid. + PATOC:MPATH + + + + + + + + + A colour that is very pale yellowish brown. + gkoutos + 2012-12-17T10:54:55Z + quality + PATO:0002410 + + + beige + + + + + A colour that is very pale yellowish brown. + PATOC:MPATH + + + + + + + + + A color consisting of yellow and brown hue. + gkoutos + 2012-12-17T10:55:51Z + quality + PATO:0002411 + + yellow brown + + + + + A color consisting of yellow and brown hue. + PATOC:GVG + + + + + + + + + A color consisting of yellow and brown hue and low brightness. + gkoutos + 2012-12-17T10:56:22Z + quality + PATO:0002412 + + dark yellow brown + + + + + A color consisting of yellow and brown hue and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of yellow and brown hue and high brightness. + gkoutos + 2012-12-17T10:57:27Z + quality + PATO:0002413 + light yellow brown + + + + + A color consisting of yellow and brown hue and high brightness. + PATOC:GVG + + + + + + + + + A quality of duration having progressive course of indefinite duration with active, acute-like elements. + gkoutos + 2012-12-17T10:59:58Z + quality + PATO:0002414 + + + chronic-active + + + + + A quality of duration having progressive course of indefinite duration with active, acute-like elements. + PATOC:MPATH + + + + + + + + + Single lesion with expansion into surrounding tissue. + gkoutos + 2012-12-17T11:01:31Z + quality + PATO:0002415 + + + focally extensive + + + + + Single lesion with expansion into surrounding tissue. + PATOC:MPATH + + + + + + + + + Flattened from above downward; below the normal level or the level of the surrounding parts. + gkoutos + 2012-12-17T12:06:55Z + quality + PATO:0002416 + + + sunken + + + + + Flattened from above downward; below the normal level or the level of the surrounding parts. + PATOC:MPATH + + + + + + + + + Extending through or affecting the entire thickness of the wall of an organ or cavity or boundary. + gkoutos + 2012-12-17T02:16:18Z + quality + PATO:0002417 + + + transmural + + + + + Extending through or affecting the entire thickness of the wall of an organ or cavity or boundary. + PATOC:MPATH + + + + + + + + + An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for acidic dyes under specific ph conditions. + gkoutos + 2012-12-17T03:01:19Z + quality + PATO:0002418 + + + acidophilic + + + + + An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for acidic dyes under specific ph conditions. + PATOC:GVG + + + + + + + + + An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for eosin dye. + gkoutos + 2012-12-17T03:02:09Z + quality + PATO:0002419 + + + eosinophilic + + + + + An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for eosin dye. + PATOC:GVG + + + + + + + + + Having both hydrophilic and hydrophobic (or lipophilic) groups. + gkoutos + 2012-12-17T03:04:39Z + quality + PATO:0002420 + + + amphiphilic + + + + + Having both hydrophilic and hydrophobic (or lipophilic) groups. + wikipedia:http://en.wiktionary.org/wiki/amphiphilic + + + + + + + + + Having or resembling the characteristic of a cicatrix - a scar resulting from formation and contraction of fibrous tissue. + gkoutos + 2012-12-17T03:08:09Z + quality + PATO:0002421 + + + cicatricial + + + + + Having or resembling the characteristic of a cicatrix - a scar resulting from formation and contraction of fibrous tissue. + mw:http://www.merriam-webster.com/dictionary/cicatricial + + + + + + + + + Pertaining to the individual parts making up an aggregate fruit like a many-lobed "berry," such as a raspberry. + gkoutos + 2012-12-17T03:11:10Z + quality + PATO:0002422 + + + Acinus is Latin for berry. + acinar + + + + + Pertaining to the individual parts making up an aggregate fruit like a many-lobed "berry," such as a raspberry. + wikipedia:https://en.wikipedia.org/wiki/Acinus + + + + + + + + + A round or lobulated protruding form resembling a nipple. + gkoutos + 2012-12-17T03:13:44Z + quality + PATO:0002423 + + + papillomatous + + + + + A round or lobulated protruding form resembling a nipple. + PATOC:MPATH + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's having two or more entities that extend from a common point in different directions. + gkoutos + 2012-12-20T11:43:47Z + quality + PATO:0002424 + + + divergent from + + + + + A positional quality inhering in a bearer by virtue of the bearer's having two or more entities that extend from a common point in different directions. + PATOC:AD + + + + + + + + + Open to view or not covered by another entity. + gkoutos + 2012-12-20T11:47:16Z + quality + PATO:0002425 + + exposed + + + + + Open to view or not covered by another entity. + PATOC:WD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped like a boat. + gkoutos + 2013-01-29T09:12:03Z + quality + PATO:0002426 + + scaphoid + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped like a boat. + wordnetweb:wordnetweb + + + + + + + + + A surface feature shape having numerous very small circular rounded projections or protuberances. + gkoutos + 2013-01-29T09:15:53Z + quality + PATO:0002427 + + knobbled + + + + + A surface feature shape having numerous very small circular rounded projections or protuberances. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A 3-D shape with three supports or legs. + gkoutos + 2013-01-29T09:18:44Z + quality + PATO:0002428 + + tripodal + + + + + A 3-D shape with three supports or legs. + PATOC:WC + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter X. + gkoutos + 2013-01-29T09:19:53Z + quality + PATO:0002429 + + x-shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter X. + PATOC:WC + + + + + + + + + A shape quality in which the bearer is shaped like a narrow band; ligulate. + gkoutos + 2013-01-29T09:21:17Z + quality + PATO:0002430 + + strap-shaped + + + + + A shape quality in which the bearer is shaped like a narrow band; ligulate. + thefreedictionary:thefreedictionary + + + + + + + + + A shape quality in which the bearer possesses a gradual, yet distinct, thinning from a wide starting point. + gkoutos + 2013-01-29T09:24:46Z + quality + PATO:0002431 + + waisted + + + + + A shape quality in which the bearer possesses a gradual, yet distinct, thinning from a wide starting point. + PATOC:WC + + + + + + + + + A shape that is in the form of a spade. + gkoutos + 2013-01-29T09:26:49Z + quality + PATO:0002432 + + spade-shaped + + + + + A shape that is in the form of a spade. + PATOC:WC + + + + + + + + + A surface feature shape marked by large amounts of relief, often with multiple ridges and grooves in close association. Topographically complex. + gkoutos + 2013-01-29T09:27:55Z + quality + PATO:0002433 + + sculpted surface + + + + + A surface feature shape marked by large amounts of relief, often with multiple ridges and grooves in close association. Topographically complex. + PATOC:AD + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity. + gkoutos + 2013-01-29T09:29:55Z + quality + PATO:0002434 + + + perpendicular to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity. + PATOC:WC + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer touching another entity along a border or with a projecting part. + gkoutos + 2013-01-29T09:31:12Z + abut + quality + PATO:0002435 + + + + abutting + + + + + A positional quality inhering in a bearer by virtue of the bearer touching another entity along a border or with a projecting part. + merriam-webster:merriam-webster + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's position being displaced from a reference point. + gkoutos + 2013-01-29T09:32:22Z + quality + PATO:0002436 + + + offset + + + + + A positional quality inhering in a bearer by virtue of the bearer's position being displaced from a reference point. + PATOC:AD + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being locked together or interconnected to another entity. + gkoutos + 2013-01-29T09:37:13Z + quality + PATO:0002437 + + + interlocked with + + + + + A structural quality inhering in a bearer by virtue of the bearer's being locked together or interconnected to another entity. + merriam-webster:merriam-webster + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being located or placed beneath the skin. + gkoutos + 2013-01-29T09:41:50Z + subcutaneous + quality + PATO:0002438 + + subdermal + + + + + A structural quality inhering in a bearer by virtue of the bearer's being located or placed beneath the skin. + thefreedictionary:thefreedictionary + + + + + + + + + An angular shape quality inhering in a bearer by virtue of the bearer's having two angles in its length giving the bearer the form of the letter W. + gkoutos + 2013-01-29T09:45:54Z + quality + PATO:0002439 + + w-shaped + + + + + An angular shape quality inhering in a bearer by virtue of the bearer's having two angles in its length giving the bearer the form of the letter W. + PATOC:WC + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the degree of the bearer's highly topographical with ridges, pits, rugosity or other surface structures. + gkoutos + 2013-01-29T10:57:42Z + quality + PATO:0002440 + + ornamentation + + + + + A surface feature shape quality inhering in a bearer by virtue of the degree of the bearer's highly topographical with ridges, pits, rugosity or other surface structures. + PATOC:GVG + + + + + + + + + A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures. + + gkoutos + 2013-01-29T10:59:42Z + quality + PATO:0002441 + + ornamented + + + + + A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures. + PATOC:AD + + + + + + + + + A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures. + + gkoutos + 2013-01-29T11:00:20Z + quality + PATO:0002442 + + unornamented + + + + + A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures. + PATOC:AD + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being located at the same level as another entity. + gkoutos + 2013-01-29T11:01:46Z + quality + PATO:0002443 + + + level with + + + + + A positional quality inhering in a bearer by virtue of the bearer's being located at the same level as another entity. + PATOC:NI + + + + + + + + + A composition quality inhering in a bearer by virtue of the bearer's being composed of or possessing inorganic material. + gkoutos + 2013-01-29T11:03:49Z + quality + PATO:0002444 + + mineralized + + + + + A composition quality inhering in a bearer by virtue of the bearer's being composed of or possessing inorganic material. + PATOC:WC + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being twisted or turned. + gkoutos + 2013-01-29T11:05:26Z + twisted + quality + PATO:0002445 + The word "torsion" has multiple different meanings in different context (e.g. the act of twisting or the morphology of the digestive tract in gastropods). This term refers purely to the resulting shape and is not to be used in the engineering and mechanics sense of torsion. +Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', but it is different in that something that is kinked has sharp twists or turns. + torsioned + + + + + A shape quality inhering in a bearer by virtue of the bearer's being twisted or turned. + freedictionary:freedictionary + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an anchor. + gkoutos + 2013-01-29T11:07:17Z + quality + PATO:0002446 + + anchor-shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an anchor. + PATOC:WC + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer being divided into four parts. + gkoutos + 2013-01-29T11:08:28Z + quality + PATO:0002447 + + quadripartite + + + + + A shape quality inhering in a bearer by virtue of the bearer being divided into four parts. + PATOC:WC + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being aligned or positioned towards another entity. + gkoutos + 2013-02-16T02:57:06Z + quality + PATO:0002448 + + + oriented towards + + + + + A quality inhering in a bearer by virtue of the bearer's being aligned or positioned towards another entity. + PATOC:WD + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and mid-line surface of an organism relative to another entity. + gkoutos + 2013-02-16T03:00:46Z + quality + PATO:0002449 + + + posteromedial to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and mid-line surface of an organism relative to another entity. + PATOC:WC + + + + + + + + + A hardness quality of giving significant resistance to pressure. + gkoutos + 2013-02-26T02:02:38Z + quality + PATO:0002450 + + firm + + + + + A hardness quality of giving significant resistance to pressure. + PATOC:CM + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting a phenotypic difference between males and females of the same species. + gkoutos + 2013-03-11T09:22:04Z + quality + PATO:0002451 + + sexually dimorphic + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting a phenotypic difference between males and females of the same species. + PATOC:WC + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed. + + gkoutos + 2013-04-08T08:43:31Z + quality + PATO:0002452 + + decondensed + + + + + A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed. + PATOC:JL + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer bring gradually worn away. + gkoutos + 2013-04-08T08:45:08Z + quality + PATO:0002453 + + eroding + + + + + A structural quality inhering in a bearer by virtue of the bearer bring gradually worn away. + PATOC:JL + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a carpel. + gkoutos + 2013-04-09T06:00:28Z + quality + PATO:0002454 + + carpel-like + + + + + A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a carpel. + PATO:JL + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's architecture bearing resemblence to a corymb type of inflorescence. + gkoutos + 2013-04-09T06:01:02Z + quality + PATO:0002455 + + corymb-like + + + + + A quality inhering in a bearer by virtue of the bearer's architecture bearing resemblence to a corymb type of inflorescence. + PATOC:JL + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of an inflorescence. + gkoutos + 2013-04-09T06:02:05Z + quality + PATO:0002456 + + inflorescence-like + + + + + A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of an inflorescence. + PATOC:JL + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a leaf. + gkoutos + 2013-04-09T06:02:58Z + quality + PATO:0002457 + + leaf-like + + + + + A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a leaf. + PATOC:JL + + + + + + + + + A quality inhering in a bearer by virtue of the bearer being thin and lacking outgrowths. + gkoutos + 2013-04-09T06:03:56Z + quality + PATO:0002458 + + pin-like + + + + + A quality inhering in a bearer by virtue of the bearer being thin and lacking outgrowths. + PATOC:JL + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a sepal, + gkoutos + 2013-04-09T06:04:36Z + quality + PATO:0002459 + + sepal-like + + + + + A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a sepal, + PATOC:JL + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer being smaller and contracted, expecially due to loss of moisture. + gkoutos + 2013-04-09T06:05:18Z + quality + PATO:0002460 + + shriveled + + + + + A structural quality inhering in a bearer by virtue of the bearer being smaller and contracted, expecially due to loss of moisture. + PATOC:JL + + + + + + + + + To bend or hang downwards due to loss of water + gkoutos + 2013-04-09T06:06:14Z + quality + PATO:0002461 + + wilty + + + + + + + + + A composition quality inhering in an bearer by virtue of the bearer's consisting of collagen. + gkoutos + 2013-09-15T11:34:15Z + quality + PATO:0002462 + + collagenous + + + + + A composition quality inhering in an bearer by virtue of the bearer's consisting of collagen. + PATOC:WD + + + + + + + + + A positional quality inhering in a bearer by virtue of some aspect of the bearer extending to the position of another entity. + gkoutos + 2013-09-15T11:41:00Z + quality + PATO:0002463 + + extends to + + + + + A positional quality inhering in a bearer by virtue of some aspect of the bearer extending to the position of another entity. + PATOC:WD + + + + + + + + + A positional quality inhering in a bearer by virtue of some aspect of the bearer extending past the position of another entity. + gkoutos + 2013-09-15T11:42:15Z + quality + PATO:0002464 + + extends beyond + + + + + A positional quality inhering in a bearer by virtue of some aspect of the bearer extending past the position of another entity. + PATOC:WD + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's resembling a prism. + gkoutos + 2013-09-15T11:44:03Z + quality + tent shaped + PATO:0002465 + + prism shaped + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer resembling a keyhole. + gkoutos + 2013-09-15T11:45:53Z + quality + PATO:0002466 + + keyhole shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer resembling a keyhole. + PATOC:WD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer resembling a thin narrow strip. + gkoutos + 2013-09-15T11:47:11Z + quality + PATO:0002467 + + lathlike + + + + + A shape quality inhering in a bearer by virtue of the bearer resembling a thin narrow strip. + PATOC:WD + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's being capable of swelling or stretching. + gkoutos + 2013-09-15T11:48:26Z + quality + PATO:0002468 + + distensible + + + + + A structure quality inhering in a bearer by virtue of the bearer's being capable of swelling or stretching. + PATOC:WD + + + + + + + + + Structural quality inhereing in a bearer in which a joint has apposed bony surfaces united by fibrous tissue, permitting no movement; found only between bones. + gkoutos + 2013-09-15T11:55:50Z + quality + PATO:0002469 + + + sutured to + + + + + Structural quality inhereing in a bearer in which a joint has apposed bony surfaces united by fibrous tissue, permitting no movement; found only between bones. + PATOC:WD + + + + + + + + + A morphological quality between two bearers inhering that one bearer is subject to change the nature, function, or condition of itself to become the other. + gkoutos + 2013-09-15T12:01:57Z + quality + PATO:0002470 + + + transformed to + + + + + A morphological quality between two bearers inhering that one bearer is subject to change the nature, function, or condition of itself to become the other. + PATOC:LC + + + + + + + + + + + + + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position. + + gkoutos + 2013-09-15T12:03:45Z + quality + PATO:0002471 + + increased velocity + + + + + A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position. + PATOC:NV + + + + + + + + + + + + + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position. + + gkoutos + 2013-09-15T12:05:06Z + quality + PATO:0002472 + + decreased velocity + + + + + A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position. + PATOC:NV + + + + + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to spontaneously arise. + gkoutos + 2013-09-15T12:07:08Z + quality + PATO:0002473 + + + neoplastic, spontaneous + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to spontaneously arise. + PATOC:NV + + + + + + + + + A flavor quality inhering in a bearer by virtue of the bearer's having an acrid, sharp, or disagreeable flavor. + gkoutos + 2013-09-15T12:09:15Z + quality + PATO:0002474 + + bitter + + + + + A flavor quality inhering in a bearer by virtue of the bearer's having an acrid, sharp, or disagreeable flavor. + PATOC:LC + + + + + + + + + A position quality inhering in a bearer by virtue of the bearer's existing near the end of another entity. + gkoutos + 2013-09-15T12:17:41Z + quality + PATO:0002475 + + + subterminal + + + + + A position quality inhering in a bearer by virtue of the bearer's existing near the end of another entity. + PATOC:WD + + + + + + + + + A position quality inhering in a bearer by virtue of the bearer's forming the end of another entity. + gkoutos + 2013-09-15T12:18:08Z + quality + PATO:0002476 + + + terminal + + + + + A position quality inhering in a bearer by virtue of the bearer's forming the end of another entity. + PATOC:WD + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to breaks without significant deformation (strain) when subjected to stress. + gkoutos + 2013-09-15T12:25:03Z + quality + PATO:0002477 + + brittle + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to breaks without significant deformation (strain) when subjected to stress. + wikipedia:http://en.wikipedia.org/wiki/Brittleness + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented transversely relative to the long axis of the bearer. + gkoutos + 2013-09-15T12:29:15Z + quality + PATO:0002478 + + + + transversely striated + + + + + A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented transversely relative to the long axis of the bearer. + PATOC:DS + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented obliquely relative to the long axis of the bearer. + gkoutos + 2013-09-15T12:29:42Z + quality + PATO:0002479 + + + + obliquely striated + + + + + A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented obliquely relative to the long axis of the bearer. + PATOC:DS + + + + + + + + + A quality inhering in an bearer by virtue of the bearer's possessing only minor levels of ossification. + gkoutos + 2013-09-30T05:47:07Z + quality + PATO:0002480 + + poorly ossified + + + + + A quality inhering in an bearer by virtue of the bearer's possessing only minor levels of ossification. + PATOC:AD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a slanting direction or position : neither perpendicular nor parallel. + gkoutos + 2013-09-30T05:49:50Z + quality + PATO:0002481 + + oblique orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a slanting direction or position : neither perpendicular nor parallel. + merriam-wester:http://www.merriam-webster.com/dictionary/oblique + + + + + + + + + Shape quality inhering in a bearer by virtue of the bearer exhibiting a narrow and elongate opening. + gkoutos + 2013-09-30T05:51:39Z + quality + PATO:0002482 + + slit-like + + + + + Shape quality inhering in a bearer by virtue of the bearer exhibiting a narrow and elongate opening. + PATOC:WD + + + + + + + + + Positional quality in which an entity is located outside of another entity. + gkoutos + 2013-09-30T06:06:27Z + quality + PATO:0002483 + + + external to + + + + + Positional quality in which an entity is located outside of another entity. + PATOC:WD + + + + + + + + + An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of an inverted letter V. + gkoutos + 2013-10-10T03:55:44Z + chevron shaped + quality + PATO:0002484 + + inverted-V shaped + + + + + An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of an inverted letter V. + PATOC:WD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's possessing two sides that are at the same continuous distance relative to each other. + gkoutos + 2013-10-10T03:58:37Z + quality + PATO:0002485 + + parallel-sided + + + + + A shape quality inhering in a bearer by virtue of the bearer's possessing two sides that are at the same continuous distance relative to each other. + PATOC:WD + + + + + + + + + A quality inhering in a process by virtue of that process having two or more organisms as participants. + gkoutos + 2013-10-10T04:08:44Z + quality + PATO:0002486 + + multi-organismal process quality + + + + + A quality inhering in a process by virtue of that process having two or more organisms as participants. + PATOC:DS + + + + + + + + + A quality inhering in a process by virtue of that process having exactly one organism as a participant. + gkoutos + 2013-10-10T04:09:51Z + quality + PATO:0002487 + + single organismal process quality + + + + + A quality inhering in a process by virtue of that process having exactly one organism as a participant. + PATOC:DS + + + + + + + + + Overlap with quality inhering in a bearer by virtue of the bearer's being positioned over another entity so as to cover some portion of it. + gkoutos + 2013-10-10T04:12:22Z + quality + PATO:0002488 + + + overlapping + + + + + Overlap with quality inhering in a bearer by virtue of the bearer's being positioned over another entity so as to cover some portion of it. + PATOC:WD + + + + + + + + + Overlap with quality inhering in a bearer by virtue of the bearer's being positioned under another entity so as to be covered by some portion of it. + gkoutos + 2013-10-10T04:13:04Z + quality + PATO:0002489 + + + overlapped by + + + + + Overlap with quality inhering in a bearer by virtue of the bearer's being positioned under another entity so as to be covered by some portion of it. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteriorly. + gkoutos + 2013-10-10T05:11:26Z + anteriorly directly + quality + PATO:0002490 + + anterior orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteriorly. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally. + + gkoutos + 2013-10-10T05:12:15Z + anterodorsally directed + quality + PATO:0002491 + + anterodorsal orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterolaterally. + gkoutos + 2013-10-10T05:13:17Z + anterolaterally directed + quality + PATO:0002492 + + anterolateral orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterolaterally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteroventrally. + gkoutos + 2013-10-10T05:13:55Z + anteroventrally directed + quality + PATO:0002493 + + anteroventral orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteroventrally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distally. + + gkoutos + 2013-10-10T05:14:37Z + distally directed + quality + PATO:0002494 + + distal orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally. + + gkoutos + 2013-10-10T05:15:24Z + dorsally directed + quality + PATO:0002495 + + dorsal orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsolaterally. + gkoutos + 2013-10-10T05:16:04Z + dorsolaterally directed + quality + PATO:0002496 + + dorsolateral orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsolaterally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed laterally. + gkoutos + 2013-10-10T05:16:45Z + laterally directed + quality + PATO:0002497 + + lateral orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed laterally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed medially. + gkoutos + 2013-10-10T05:17:30Z + medially directed + quality + PATO:0002498 + + medial orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed medially. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteriorly. + gkoutos + 2013-10-10T05:18:21Z + posteriorly directed + quality + PATO:0002499 + + posterior orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteriorly. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrolaterally. + gkoutos + 2013-10-10T05:19:16Z + ventrolaterally directed + quality + PATO:0002500 + + ventrolaterally orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrolaterally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrally. + gkoutos + 2013-10-10T05:19:22Z + ventrally directed + quality + PATO:0002501 + + ventral orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed transversely. + gkoutos + 2013-10-10T05:19:25Z + transversely oriented + quality + PATO:0002502 + + transverse orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed transversely. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterolaterally. + gkoutos + 2013-10-10T05:19:28Z + posterolaterally directed + quality + PATO:0002503 + + posterolateral orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterolaterally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally. + + gkoutos + 2013-10-10T05:19:36Z + posterodorsally directed + quality + PATO:0002504 + + posterodorsal orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally. + PATOC:WD + + + + + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus. + gkoutos + 2013-10-21T05:44:34Z + quality + PATO:0002505 + + + nucleated + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus. + PATOC:GVG + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's not having undulating edges forming lobes. + gkoutos + 2013-10-25T04:42:40Z + quality + PATO:0002506 + + alobate + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's not having undulating edges forming lobes. + PATOC:DOS + + + + + + + + + A composition quality inhering in a bearer by virtue of the bearer's consisting of keratin. + segerdel + 2014-02-04T12:38:14Z + quality + PATO:0002507 + + keratinous + + + + + A composition quality inhering in a bearer by virtue of the bearer's consisting of keratin. + PATOC:EJS + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer being hidden from view. + segerdel + 2014-02-04T01:30:21Z + quality + PATO:0002508 + + concealed + + + + + A positional quality inhering in a bearer by virtue of the bearer being hidden from view. + PATOC:EJS + + + + + + + + + A 2-D shape quality inhering in a bearer by virtue of the bearer's having six angles and six sides. + segerdel + 2014-02-04T01:50:05Z + quality + PATO:0002509 + + hexagonal + + + + + A 2-D shape quality inhering in a bearer by virtue of the bearer's having six angles and six sides. + Merriam-Webster:hexagonal + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer being divided into multiple parts. + segerdel + 2014-02-06T01:15:28Z + quality + PATO:0002510 + + multipartite + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer being divided into multiple parts. + PATOC:EJS + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a cane. + segerdel + 2014-02-06T02:04:35Z + quality + cane-shaped + PATO:0002511 + + cane-like + + + + + A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a cane. + PATOC:EJS + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer flowing or coming together with another entity. + segerdel + 2014-02-06T02:28:39Z + quality + PATO:0002512 + + + confluent with + + + + + A positional quality inhering in a bearer by virtue of the bearer flowing or coming together with another entity. + Merriam-Webster:confluent + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's having a slanting direction (neither perpendicular nor parallel) relative to another entity. + segerdel + 2014-02-06T02:54:16Z + quality + PATO:0002513 + + + oblique to + + + + + A positional quality inhering in a bearer by virtue of the bearer's having a slanting direction (neither perpendicular nor parallel) relative to another entity. + PATOC:EJS + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteromedially. + segerdel + 2014-02-07T12:59:10Z + medioanterior orientation + quality + PATO:0002514 + + anteromedial orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteromedially. + PATOC:EJS + + + + + + + + + An elevation quality inhering in a bearer by virtue the bearer's being in a high position relative to another entity. + segerdel + 2014-02-07T01:12:48Z + quality + PATO:0002515 + + + increased elevation relative to + + + + + An elevation quality inhering in a bearer by virtue the bearer's being in a high position relative to another entity. + PATOC:EJS + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer being hidden from view or covered by another entity. + segerdel + 2014-02-10T01:13:53Z + quality + PATO:0002516 + + + concealed by + + + + + A positional quality inhering in a bearer by virtue of the bearer being hidden from view or covered by another entity. + PATOC:EJS + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a saddle. + segerdel + 2014-02-10T01:23:13Z + quality + PATO:0002517 + + saddle-shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a saddle. + PATOC:EJS + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer being level or even with another surface. + segerdel + 2014-02-10T01:26:50Z + quality + PATO:0002518 + + flush + + + + + A positional quality inhering in a bearer by virtue of the bearer being level or even with another surface. + WordReference:flush + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having an open, latticed, or porous structure; used especially of bone. + segerdel + 2014-02-10T01:33:14Z + quality + PATO:0002519 + + cancellous + + + + + A structural quality inhering in a bearer by virtue of the bearer's having an open, latticed, or porous structure; used especially of bone. + TheFreeDictionary:cancellous + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer being shaped like a scute or an osteoderm. + segerdel + 2014-02-10T01:37:47Z + quality + PATO:0002520 + + scute-like + + + + + A shape quality inhering in a bearer by virtue of the bearer being shaped like a scute or an osteoderm. + PATOC:EJS + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a funnel. + segerdel + 2014-02-10T01:40:05Z + quality + PATO:0002521 + + funnel-shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a funnel. + PATOC:EJS + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer having an elongate structure, similar to a ridge, that extends longitudinally along an anatomical entity. + segerdel + 2014-02-10T01:46:38Z + quality + PATO:0002522 + + keel-shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer having an elongate structure, similar to a ridge, that extends longitudinally along an anatomical entity. + PATOC:EJS + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity and to the horizon. + segerdel + 2014-02-10T02:25:42Z + quality + PATO:0002523 + + + vertical to + + + + + A positional quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity and to the horizon. + PATOC:EJS + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed mesiolaterally. + segerdel + 2014-02-10T02:37:42Z + quality + PATO:0002524 + + mesiolateral orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed mesiolaterally. + PATOC:EJS + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer being in a position that produces a separation in, or acting to separate, another entity. + segerdel + 2014-02-10T02:48:15Z + quality + PATO:0002525 + + + separating + + + + + A structural quality inhering in a bearer by virtue of the bearer being in a position that produces a separation in, or acting to separate, another entity. + PATOC:EJS + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally. + + segerdel + 2014-03-11T11:28:39Z + antero-distal orientation + quality + PATO:0002526 + anterodistal orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally. + PATOC:EJS + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally. + + segerdel + 2014-03-11T11:29:22Z + postero-distal orientation + quality + PATO:0002527 + posterodistal orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally. + PATOC:EJS + + + + + + + + + PATO:0002628 + quality + PATO:0002528 + obsoleted because the ID was accidentally reused + obsolete borderline intensity + true + + + + + + + + + PATO:0002629 + quality + PATO:0002529 + obsoleted because the ID was accidentally reused + obsolete profound intensity + true + + + + + + + + + PATO:0002630 + quality + PATO:0002530 + obsoleted because the ID was accidentally reused + obsolete episodic + true + + + + + + + + + PATO:0002631 + quality + PATO:0002531 + obsoleted because the ID was accidentally reused + obsolete refractory + true + + + + + + + + + PATO:0002632 + quality + PATO:0002532 + obsoleted because the ID was accidentally reused + obsolete secondary + true + + + + + + + + + A multipartite quality inhering in a bearer by virtue of the bearer being divided into two parts. + wasila.dahdul + 2014-08-12T11:12:13Z + quality + PATO:0002533 + + bipartite + + + + + A multipartite quality inhering in a bearer by virtue of the bearer being divided into two parts. + PATOC:WD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped like a plowshare. + wasila.dahdul + 2014-08-12T11:23:12Z + Image:http://2.bp.blogspot.com/_TbkIC-eqFNM/S66IJ3omNWI/AAAAAAAAFSk/pzThLJPvYZw/s1600/ard-detail.gif + plow-share shaped + quality + PATO:0002534 + + plowshare shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped like a plowshare. + PATOC:WD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a short and stout cylindrical shape. + wasila.dahdul + 2014-08-12T11:30:08Z + quality + PATO:0002535 + + peg-like + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a short and stout cylindrical shape. + PATOC:WD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape like a boomerang, with two arms connected at an angle. + wasila.dahdul + 2014-08-12T11:32:16Z + quality + PATO:0002536 + + boomerang shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape like a boomerang, with two arms connected at an angle. + PATOC:WD + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a shape not quite ovoid. approximately ovoid. + wasila.dahdul + 2014-08-12T11:51:38Z + quality + PATO:0002537 + + subovoid + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a shape not quite ovoid. approximately ovoid. + merriam-webster:http://www.merriam-webster.com/dictionary/subovoid + + + + + + + + + A shape quality that obtains by virtue of the bearer being concave on one side and convex on the other. + wasila.dahdul + 2014-08-12T11:56:13Z + concavoconvex + quality + PATO:0002538 + + concavo-convex + + + + + A shape quality that obtains by virtue of the bearer being concave on one side and convex on the other. + merriam-webster:http://www.merriam-webster.com/dictionary/concavo-convex + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape like a ring (a circular shape enclosing a space). + wasila.dahdul + 2014-08-12T12:01:56Z + quality + PATO:0002539 + + ring shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape like a ring (a circular shape enclosing a space). + PATOC:WD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's possessing a small, spike-like shape. + wasila.dahdul + 2014-08-12T12:07:44Z + quality + PATO:0002540 + + spur shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's possessing a small, spike-like shape. + PATOC:WD + + + + + + + + + Pertaining to the ability or tendency of an organism or cell to maintain internal equilibrium by adjusting its physiological processes. + haendel + 2014-12-01T16:07:28Z + quality + PATO:0002541 + homeostatic + + + + + Pertaining to the ability or tendency of an organism or cell to maintain internal equilibrium by adjusting its physiological processes. + GO:0042592 + + + + + + + + + An intensity which is borderline in it its effect or force as compared to baseline or normal. + haendel + 2014-05-26T06:42:21Z + quality + PATO:0002628 + + borderline intensity + + + + + + + + + An intensity which is characterized by being very severe. + haendel + 2014-05-26T06:44:11Z + quality + PATO:0002629 + + profound intensity + + + + + An intensity which is characterized by being very severe. + PATO:MAH + + + + + + + + + An occurrence quality inhering in a bearer by virtue of the bearer's having a course that occurs occasionally. + haendel + 2014-05-26T06:50:16Z + quality + PATO:0002630 + + episodic + + + + + An occurrence quality inhering in a bearer by virtue of the bearer's having a course that occurs occasionally. + PATO:MAH + + + + + + + + + An occurrence of a process during which time there is an inability to change the course, extent, or repetition of the process. + haendel + 2014-05-26T13:09:29Z + quality + PATO:0002631 + + refractory + + + + + An occurrence of a process during which time there is an inability to change the course, extent, or repetition of the process. + PATO:MAH + + + + + + + + + A quality in which the effect or outcome is not primary or the focus of the observation. + haendel + 2014-05-26T13:17:45Z + quality + PATO:0002632 + + secondary + + + + + A quality in which the effect or outcome is not primary or the focus of the observation. + PATO:MAH + + + + + + + + + A 3-D shape that is half of a sphere. + wasila.dahdul + 2014-09-09T12:25:08Z + quality + PATO:0005000 + + hemispheroid + + + + + A 3-D shape that is half of a sphere. + PATOC:WD + + + + + + + + + + + + + + + A variability quality inhering in the bearer by virtue of the bearer having a variable number or count of an entity. + wasila.dahdul + 2014-09-09T12:27:33Z + quality + variable number + PATO:0005001 + + variability of count + + + + + A variability quality inhering in the bearer by virtue of the bearer having a variable number or count of an entity. + PATOC:WD + + + + + + + + + Having the shape of a pear; tapering near the top and bulging toward the base or bottom. From thefreedictionary.com + wasila.dahdul + 2014-09-09T12:30:02Z + quality + PATO:0005002 + + pear shaped + + + + + Having the shape of a pear; tapering near the top and bulging toward the base or bottom. From thefreedictionary.com + PATOC:WD + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's resembling the form of a paddle. + wasila.dahdul + 2014-09-09T12:34:45Z + quality + PATO:0005003 + + paddle shaped + + + + + A quality inhering in a bearer by virtue of the bearer's resembling the form of a paddle. + PATOC:WD + + + + + + + + + A shape that is almost an ellipse. + wasila.dahdul + 2014-09-09T12:36:15Z + quality + PATO:0005004 + + subelliptical + + + + + A shape that is almost an ellipse. + PATOC:WD + + + + + + + + + Shape quality inhering in a bearer expanding outward, or having parts expanding outward, from a center point. + wasila.dahdul + 2014-09-09T12:37:27Z + quality + PATO:0005005 + + radiating + + + + + Shape quality inhering in a bearer expanding outward, or having parts expanding outward, from a center point. + PATOC:WD + + + + + + + + + A morphology quality inhering in a bearer by virtue of the bearer's being morphologically distinguishable from another entity. + wasila.dahdul + 2014-09-09T12:40:57Z + distinct from + quality + PATO:0005006 + + + differentiated from + + + + + A morphology quality inhering in a bearer by virtue of the bearer's being morphologically distinguishable from another entity. + PATOC:WD + + + + + + + + + A 3-D shape inhering in a bearer by virtue of the bearer's having dentition characterized by high-crowned teeth and enamel which extends far past the gum line, which provides extra material for wear and tear. + wasila.dahdul + 2014-09-09T12:58:01Z + quality + PATO:0005007 + + Need to include axiom: hypsodont inheres_in some ('tooth crown' and bearer_of 'increased +height'). + hypsodont + + + + + A 3-D shape inhering in a bearer by virtue of the bearer's having dentition characterized by high-crowned teeth and enamel which extends far past the gum line, which provides extra material for wear and tear. + DOI:10.1111/j.1469-185X.2011.00176.x + + + + + + + + + A 3-D shape inhering in a bearer by virtue of the bearer's having dentition characterized by low-crowned teeth. Human teeth are brachydont. + wasila.dahdul + 2014-09-09T12:59:35Z + quality + PATO:0005008 + + Need to include axiom: brachydont inheres_in some ('tooth crown' and bearer_of 'decreased +height'). + brachydont + + + + + A 3-D shape inhering in a bearer by virtue of the bearer's having dentition characterized by low-crowned teeth. Human teeth are brachydont. + DOI:10.1111/j.1469-185X.2011.00176.x + + + + + + + + + A 3-D shape inhering in a bearer by virtue of the bearer's having an entity in the form of a molar tooth. + wasila.dahdul + 2014-09-09T13:03:00Z + quality + PATO:0005009 + + molariform + + + + + A 3-D shape inhering in a bearer by virtue of the bearer's having an entity in the form of a molar tooth. + PATOC:WD + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's having many fine filaments or branches that give a feathery appearance: for example, resembling a feather. + wasila.dahdul + 2014-09-25T15:03:17Z + quality + PATO:0005010 + + plumose + + + + + A branched quality inhering in a bearer by virtue of the bearer's having many fine filaments or branches that give a feathery appearance: for example, resembling a feather. + www.oxforddictionaries.com:http://www.oxforddictionaries.com/us/definition/american_english/plumose + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer possessing an uninterrupted or unbroken connection or spatial distribution relative to the position of another entity. + wasila.dahdul + 2014-09-25T15:07:34Z + quality + PATO:0005011 + + + continuous with + + + + + A positional quality inhering in a bearer by virtue of the bearer possessing an uninterrupted or unbroken connection or spatial distribution relative to the position of another entity. + PATOC:WD + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts. + + wasila.dahdul + 2014-09-25T15:11:47Z + quality + PATO:0005012 + + complete structure + + + + + A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts. + PATOC:WD + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities. + + wasila.dahdul + 2014-09-25T15:12:35Z + quality + PATO:0005013 + + incomplete structure + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities. + PATOC:WD + + + + + + + + + A spheroid shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, spherical. + wasila.dahdul + 2014-09-25T15:16:25Z + quality + PATO:0005014 + + subspherical + + + + + A spheroid shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, spherical. + PATOC:WD + + + + + + + + + A size quality inhering in an entity or set of entities in which size increases or decreases along the extent of the entity or set. + wasila.dahdul + 2014-09-25T15:17:51Z + gradient of size + quality + PATO:0005015 + + tapered size + + + + + A size quality inhering in an entity or set of entities in which size increases or decreases along the extent of the entity or set. + PATOC:WD + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being enclosed on all sides by another entity. + wasila.dahdul + 2014-09-25T15:20:55Z + enclosed by + quality + PATO:0005016 + + + surrounded by + + + + + A positional quality inhering in a bearer by virtue of the bearer's being enclosed on all sides by another entity. + PATOC:WD + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being compressed from the side facing the lips to the side facing the tongue. + wasila.dahdul + 2014-10-02T11:52:09Z + quality + PATO:0005017 + + labiolingually compressed + + + + + A quality inhering in a bearer by virtue of the bearer's being compressed from the side facing the lips to the side facing the tongue. + PATOC:WD + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being compressed from the side facing the midline of the jaw to the side opposite the midline. + wasila.dahdul + 2014-10-02T11:53:52Z + quality + PATO:0005018 + + mesiodistally compressed + + + + + A quality inhering in a bearer by virtue of the bearer's being compressed from the side facing the midline of the jaw to the side opposite the midline. + PATOC:WD + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the tongue. + wasila.dahdul + 2014-10-02T12:01:16Z + quality + PATO:0005019 + + curved lingually + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the tongue. + PATOC:WD + + + + + + + + + A shape quality inhering on a bearer by virtue of a bearer's shape lacking in pattern or uniformity; for example, it may have sides of different lengths, different curvatures, or unequal angles. + wasila.dahdul + 2014-10-03T10:23:17Z + quality + PATO:0005020 + + irregularly shaped + + + + + A shape quality inhering on a bearer by virtue of a bearer's shape lacking in pattern or uniformity; for example, it may have sides of different lengths, different curvatures, or unequal angles. + PATOC:WD + + + + + + + + + Cuspidate quality inhering in a bearer by virtue of the bearer's possessing a single cusp. + wasila.dahdul + 2014-10-17T14:14:04Z + quality + PATO:0005021 + + unicuspidate + + + + + Cuspidate quality inhering in a bearer by virtue of the bearer's possessing a single cusp. + PATOC:WD + + + + + + + + + A diameter that remains constant throughout the extent of an entity. + wasila.dahdul + 2014-10-17T14:15:59Z + quality + PATO:0005022 + + uniform diameter + + + + + A diameter that remains constant throughout the extent of an entity. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is in the parasagittal plane. + wasila.dahdul + 2014-10-17T14:21:30Z + quality + PATO:0005023 + + parasagittal orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is in the parasagittal plane. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed along the longitudinal or anterior-posterior axis. + wasila.dahdul + 2014-10-17T14:24:19Z + quality + PATO:0005024 + + longitudinal orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed along the longitudinal or anterior-posterior axis. + PATOC:WD + + + + + + + + + A structural quality inhering in the bearer by virtue of the bearer consisting of a single, maximally connected structure. + davidos + 2014-12-12T08:41:11Z + quality + PATO:0010000 + What counts as maximally connected may be relative to some specification of granularity. + maximally connected + + + + + A structural quality inhering in the bearer by virtue of the bearer consisting of a single, maximally connected structure. + GOC:dos + + + + + + + + + A structural quality inhering in the bearer by virtue of the bearer consisting of multiple structures lacking any physical connection to each other. + davidos + 2014-12-12T08:43:17Z + quality + PATO:0010001 + disconnected + + + + + A structural quality inhering in the bearer by virtue of the bearer consisting of multiple structures lacking any physical connection to each other. + GOC:dos + + + + + + + + + The velocity of spatial propagation of a process. Examples include the velocity of propagation of an action potential along an axon. + dos + 2019-07-18T18:24:15Z + quality + PATO:0010002 + propagation velocity + + + + + The velocity of spatial propagation of a process. Examples include the velocity of propagation of an action potential along an axon. + orcid:0000-0002-7073-9172 + + + + + + + + + + + + + + + + + + + + + A propagation velocity that is higher than normal. + dos + 2019-07-18T18:24:25Z + quality + PATO:0010003 + increased propagation velocity + + + + + A propagation velocity that is higher than normal. + orcid:0000-0002-7073-9172 + + + + + + + + + + + + + + + + + + + + + A propagation velocity that is lower than normal. + dos + 2019-07-18T18:24:36Z + quality + PATO:0010004 + decreased propagation velocity + + + + + A propagation velocity that is lower than normal. + orcid:0000-0002-7073-9172 + + + + + + + + + A physical quality of a process that is its spatial distribution. For example, bone mineralization follows stereotypical spatial distribution patterns during development, which may be altered in some phenotypes. + dos + 2019-07-18T18:49:08Z + quality + PATO:0010005 + + spatial distribution of a process + + + + + A physical quality of a process that is its spatial distribution. For example, bone mineralization follows stereotypical spatial distribution patterns during development, which may be altered in some phenotypes. + orcid:0000-0002-7073-9172 + + + + + + + + + + + + + + + + + + Absence due to a degenerative process. + cjm + quality + PATO:0015001 + + + absence due to degeneration + + + + + Absence due to a degenerative process. + PATOC:PortlandMeetingFeb2015 + + + + + + + + + The ability of a process to produce its output. + cjm + quality + PATO:0015002 + + process efficacy + + + + + The ability of a process to produce its output. + PATOC:PortlandMeetingFeb2015 + + + + + + + + + + + + + + + + + + + + + A decrease in the ability of a process to produce its output. + + cjm + quality + PATO:0015003 + + decreased efficacy + + + + + A decrease in the ability of a process to produce its output. + PATOC:PortlandMeetingFeb2015 + + + + + + + + + + + + + + + + + + + + + A increase in the ability of a process to produce its output. + + cjm + quality + PATO:0015004 + + increased efficacy + + + + + A increase in the ability of a process to produce its output. + PATOC:PortlandMeetingFeb2015 + + + + + + + + + + + + + + + + + + + + + Slender and spirally coiled. + tendrilled + quality + tendril-like + tendril-shaped + PATO:0015005 + + tendrilous + + + + + Slender and spirally coiled. + https://en.wiktionary.org/wiki/tendril + + + + + + + + + A quality inhering in a structure by virtue of it consisting of many of repeated, similar or identical subunits, arranged in some orderly array. + quality + PATO:0015006 + + A complete coverage of this domain would subclasses homopolymeric, copolymeric, crystalline. + polymeric + + + + + A quality inhering in a structure by virtue of it consisting of many of repeated, similar or identical subunits, arranged in some orderly array. + GOC:DOS + https://github.com/pato-ontology/pato/issues/78 + + + + + + + + + A quality inhering in a bearer by virtue of the degree to which the bearers stands out or projects beyond a surface or line. + quality + PATO:0015007 + + prominence + + + + + A quality inhering in a bearer by virtue of the degree to which the bearers stands out or projects beyond a surface or line. + GOC:CJM + + + + + + + + + A quality inhering in a bearer by virtue of the extent to which the bearer is capable of being stretched or swollen. + quality + PATO:0015008 + + distensibility + + + + + A quality inhering in a bearer by virtue of the extent to which the bearer is capable of being stretched or swollen. + GOC:CJM + + + + + + + + + A quality inhering in air by virtue of the partial pressure exerted by the bearer's water vapour content. + quality + PATO:0015009 + + humidity + + + + + A quality inhering in air by virtue of the partial pressure exerted by the bearer's water vapour content. + https://github.com/pato-ontology/pato/issues/90 + + + + + + + + + + + + + + + + + + + + + An increase in humidity. + + quality + humid + PATO:0015010 + + increased humidity + + + + + An increase in humidity. + https://github.com/pato-ontology/pato/issues/90 + + + + + + + + + + + + + + + + + + + + + An decrease in humidity. + + quality + PATO:0015011 + + decreased humidity + + + + + An decrease in humidity. + https://github.com/pato-ontology/pato/issues/90 + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of roughly equal proportions of positively and negatively charged particles, having neither a defined volume nor defined shape, having internal magnetic fields, and being electrically conductive. + quality + PATO:0015012 + + quality of a plasma + + + + + A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of roughly equal proportions of positively and negatively charged particles, having neither a defined volume nor defined shape, having internal magnetic fields, and being electrically conductive. + https://github.com/pato-ontology/pato/issues/88 + + + + + + + + + The degree to which the bearer is exposed to visible light. + quality + PATO:0015013 + + degree of illumination + + + + + The degree to which the bearer is exposed to visible light. + https://github.com/pato-ontology/pato/issues/89 + + + + + + + + + + + + + + + + + + + + + An increase in illumination. + + quality + illuminated + PATO:0015014 + + increased degree of illumination + + + + + An increase in illumination. + https://github.com/pato-ontology/pato/issues/89 + + + + + + + + + + + + + + + + + + + + + An decrease in illumination. + + quality + PATO:0015015 + + decreased degree of illumination + + + + + An decrease in illumination. + https://github.com/pato-ontology/pato/issues/89 + + + + + + + + + Having a shape or form that resembles a step of a stairway (e.g., a ledge or offset margin). + quality + PATO:0015016 + + stepped + + + + + Having a shape or form that resembles a step of a stairway (e.g., a ledge or offset margin). + http://www.thefreedictionary.com/stepped + https://github.com/pato-ontology/pato/issues/82 + + + + + + + + + A physical quality inhering in an entity by virtue of a portion of the bearer's molecular or polymolecular constituents present in one phase being dispersed in a portion of the bearer's constituents present in another phase. + quality + PATO:0015017 + + quality of a colloid + + + + + A physical quality inhering in an entity by virtue of a portion of the bearer's molecular or polymolecular constituents present in one phase being dispersed in a portion of the bearer's constituents present in another phase. + ENVO:pb + https://github.com/pato-ontology/pato/issues/91 + https://goldbook.iupac.org/html/C/C01172.html + + + + + + + + + A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being suspended in a gas. + quality + PATO:0015018 + + quality of an aerosol + + + + + A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being suspended in a gas. + ENVO:pb + https://github.com/pato-ontology/pato/issues/91 + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter C. + quality + PATO:0015019 + + C-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter C. + github:mah11 + https://github.com/pato-ontology/pato/issues/96 + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter J. + quality + PATO:0015020 + + J-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter J. + github:mah11 + https://github.com/pato-ontology/pato/issues/96 + + + + + + + + + The propensity of a material to undergo combustion. Combustion encompasses smouldering and flaming combustion. Combustibility is usually applied to solids. + quality + PATO:0015021 + + combustibility + + + + + The propensity of a material to undergo combustion. Combustion encompasses smouldering and flaming combustion. Combustibility is usually applied to solids. + https://en.wikipedia.org/wiki/Combustibility + https://github.com/EnvironmentOntology/envo/issues/384 + + + + + + + + + + + + + + + + + + + + + An increase in combustibility. + + combustible + quality + PATO:0015022 + + increased combustibility + + + + + + + + + + + + + + + + + + + + + An decrease in combustibility. + + quality + noncombustible + PATO:0015023 + + decreased combustibility + + + + + + + + + + + + + + + + + + + + + An increase in porosity. + quality + PATO:0015024 + + increased porosity + + + + + An increase in porosity. + https://github.com/pato-ontology/pato/issues/110 + + + + + + + + + + + + + + + + + + + + + An decrease in porosity. + + quality + PATO:0015025 + + decreased porosity + + + + + An decrease in porosity. + https://github.com/pato-ontology/pato/issues/110 + + + + + + + + + quality, state, or degree of being stable. + quality + PATO:0015026 + + + stability + + + + + quality, state, or degree of being stable. + https://github.com/pato-ontology/pato/issues/113 + + + + + + + + + + + + + + + + + + + + + An increase in stability. + quality + PATO:0015027 + + + increased stability + + + + + An increase in stability. + https://github.com/pato-ontology/pato/issues/113 + + + + + + + + + + + + + + + + + + + + + A decrease in stability. + + quality + PATO:0015028 + + + decreased stability + + + + + A decrease in stability. + https://github.com/pato-ontology/pato/issues/113 + + + + + + + + + A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being transiently dispersed in a solid, liquid, or gas before settling due to gravity or centrifugal forces. + quality + PATO:0015029 + + quality of a suspension + + + + + A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being transiently dispersed in a solid, liquid, or gas before settling due to gravity or centrifugal forces. + ENVO:pb + https://github.com/pato-ontology/pato/issues/91 + + + + + + + + + A shape that ineres in a bearer by virtue of the bearer's mass being distributed in a feather-like fashion. + feather-shaped + plumed + quality + PATO:0015030 + + plume-shaped + + + + + A shape that ineres in a bearer by virtue of the bearer's mass being distributed in a feather-like fashion. + https://github.com/pato-ontology/pato/issues/122 + + + + + + + + + A biological sex quality inhering in an individual based upon genotypic composition of sex chromosomes. + mah + quality + PATO:0020000 + Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, we have XY, XX, though abnormal XXY, X0, XYY, and other combinations are possible. + genotypic sex + + + + + A biological sex quality inhering in an individual based upon genotypic composition of sex chromosomes. + PATOC:MAH + + + + + + + + + A biological sex quality inhering in an individual based upon genotypic composition that confers the capability for an organism to differentiate male gonads. + mah + quality + PATO:0020001 + Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XY, though abnormal XXY and XYY would also result in a male phenotypic outcome. + male genotypic sex + + + + + A biological sex quality inhering in an individual based upon genotypic composition that confers the capability for an organism to differentiate male gonads. + PATOC:MAH + + + + + + + + + A biological sex quality inhering in an individual or a population based upon genotypic composition that confers the capability for an organism to differentiate female gonads. + mah + quality + PATO:0020002 + Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XX, though abnormal X0 and XXX would also result in a female phenotypic outcome. + female genotypic sex + + + + + A biological sex quality inhering in an individual or a population based upon genotypic composition that confers the capability for an organism to differentiate female gonads. + PATOC:MAH + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be used as a safe means of hydration. + pbuttigieg + 2015-09-01T16:16:44Z + drinkability + quality + PATO:0025000 + potability + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be used as a safe means of hydration. + Wikipedia:https://en.wikipedia.org/wiki/Drinking_water + + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration. + + pbuttigieg + 2015-09-01T16:18:57Z + undrinkable + quality + PATO:0025001 + non-potable + + + + + A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration. + Wikipedia:https://en.wikipedia.org/wiki/Drinking_water + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration. + + pbuttigieg + 2015-09-01T16:19:02Z + drinkable + quality + PATO:0025002 + potable + + + + + A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration. + Wikipedia:https://en.wikipedia.org/wiki/Drinking_water + + + + + + + + + A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some or all of what are normally posterior structures. + segerdel + quality + PATO:0030000 + anterioralized + + + + + A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some or all of what are normally posterior structures. + PATOC:EJS + + + + + + + + + A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally dorsal structures and missing some or all of what are normally ventral structures. + segerdel + quality + PATO:0030001 + dorsalized + + + + + A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally dorsal structures and missing some or all of what are normally ventral structures. + PATOC:EJS + + + + + + + + + A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally posterior structures and missing some or all of what are normally anterior structures. + segerdel + quality + PATO:0030002 + posterioralized + + + + + A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally posterior structures and missing some or all of what are normally anterior structures. + PATOC:EJS + + + + + + + + + A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally ventral structures and missing some or all of what are normally dorsal structures. + segerdel + quality + PATO:0030003 + ventralized + + + + + A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally ventral structures and missing some or all of what are normally dorsal structures. + PATOC:EJS + + + + + + + + + An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some but not all of what are normally posterior structures. + segerdel + quality + PATO:0030004 + partially anterioralized + + + + + An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some but not all of what are normally posterior structures. + PATOC:EJS + + + + + + + + + A dorsalized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally dorsal structures and missing some but not all of what are normally ventral structures. + segerdel + quality + PATO:0030005 + partially dorsalized + + + + + A dorsalized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally dorsal structures and missing some but not all of what are normally ventral structures. + PATOC:EJS + + + + + + + + + A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally posterior structures and missing some but not all of what are normally anterior structures. + segerdel + quality + PATO:0030006 + partially posterioralized + + + + + A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally posterior structures and missing some but not all of what are normally anterior structures. + PATOC:EJS + + + + + + + + + A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally ventral structures and missing some but not all of what are normally dorsal structures. + segerdel + quality + PATO:0030007 + partially ventralized + + + + + A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally ventral structures and missing some but not all of what are normally dorsal structures. + PATOC:EJS + + + + + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being abnormally placed or arranged. + + 2018-05-21T22:44:38Z + quality + PATO:0040000 + heterotaxic + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being abnormally placed or arranged. + http://medical-dictionary.thefreedictionary.com/heterotaxic + + + + + + + + + Shaped like a ring + + 2018-05-24T03:56:53Z + annular + quality + PATO:0040001 + ring-shaped + + + + + Shaped like a ring + https://orcid.org/0000-0002-6601-2165 + + + + + + + + + A positional quality inhering in a bearer by virtue of some aspect of that bearer beginning from a position on another entity. + + 2018-05-24T04:10:53Z + quality + PATO:0040002 + + originates from + + + + + + + + + The ability of a pathogen to produce an infectious disease or disorder in an another organism. + + 2018-08-02T04:24:52Z + quality + PATO:0040003 + pathogenicity + + + + + The ability of a pathogen to produce an infectious disease or disorder in an another organism. + https://orcid.org/0000-0001-8941-3984 + + + + + + + + + A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness. + + 2018-08-02T04:39:30Z + quality + PATO:0040004 + plush + + + + + A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness. + https://orcid.org/0000-0001-5208-3432 + https://orcid.org/0000-0003-4606-0597 + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally. + + 2018-11-12T22:54:16Z + posteroventrally oriented + quality + PATO:0040005 + posteroventral orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown. + + 2018-11-12T18:09:59Z + quality + PATO:0040006 + crown like + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell. + + 2018-11-12T18:12:47Z + quality + PATO:0040007 + shell shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band. + + 2018-11-12T18:15:10Z + quality + PATO:0040008 + fringed + + + + + A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band. + https://orcid.org/0000-0003-3162-7490 + https://www.merriam-webster.com/dictionary/fringe + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl. + + 2018-11-12T18:17:01Z + quality + PATO:0040009 + bowl shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + Mobility relative to a second entity. + + 2018-11-12T18:20:08Z + quality + PATO:0040010 + For example, distinct anteroposterior mobility of palatine relative to mesethmoid. + mobile relative to + + + + + Mobility relative to a second entity. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + Immobility relative to a second entity. + + 2018-11-12T18:21:07Z + quality + PATO:0040011 + For example: distinct anteroposterior immobility of palatine relative to mesethmoid. + immobile relative to + + + + + Immobility relative to a second entity. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + A shape that is in the form of a plug, being tube-like and expanded on one end. + + 2018-11-12T18:24:41Z + plug like + quality + PATO:0040012 + plug shaped + + + + + A shape that is in the form of a plug, being tube-like and expanded on one end. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially. + + 2018-11-12T18:27:57Z + dorsomedially directed + quality + PATO:0040013 + dorsomedial orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + A shape that is in the form of a narrow strip encircling an object. + + 2018-11-12T18:31:51Z + band like + band-like + strip like + strip-like + quality + PATO:0040014 + band shaped + + + + + A shape that is in the form of a narrow strip encircling an object. + https://orcid.org/0000-0003-3162-7490 + https://www.merriam-webster.com/dictionary/band + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling that of a trough, being narrow, long, and boxlike in shape. + + 2018-11-12T18:35:51Z + trough like + trough-like + trough-shaped + quality + PATO:0040015 + trough shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling that of a trough, being narrow, long, and boxlike in shape. + http://www.dictionary.com/browse/trough + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides. + + 2018-11-12T18:39:48Z + quality + PATO:0040016 + pentagonal + + + + + A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides. + https://orcid.org/0000-0003-3162-7490 + https://www.merriam-webster.com/dictionary/pentagonal + + + + + + + + + A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal. + + 2018-11-12T19:01:51Z + dysgenesis + quality + PATO:0040017 + dysplastic growth + + + + + A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal. + https://www.cancer.gov/publications/dictionaries/cancer-terms/def/dysplasia + + + + + + + + + Fibrosis is the formation of excess fibrous connective tissue in an organ or tissue in a reparative or reactive process. + + 2018-11-12T23:16:17Z + quality + PATO:0040019 + fibrotic + + + + + Fibrosis is the formation of excess fibrous connective tissue in an organ or tissue in a reparative or reactive process. + https://en.wikipedia.org/wiki/Fibrosis + + + + + + + + + Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal. + + 2018-11-16T22:52:49Z + quality + PATO:0040020 + spayed female + + + + + + + + + A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present. + http://orcid.org/0000-0001-5208-3432 + quality + PATO:0040025 + lesioned + + + + + A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present. + NCIT:C3824 + + + + + + + + + + + + + + + + + + + + + A rate which is relatively normal. + quality + PATO:0045000 + + + normal rate + + + + + + + + + + + + + + + + + + + + + + + + + + A quality of an object that has a value that is normal or average. + Luke Slater + 2017-12-21T14:11:01Z + quality + PATO:0045001 + normal object quality + + + + + + + + + + + + + + + + + + + + + An acidity which is relatively normal. + quality + PATO:0045002 + + normal acidity + + + + + + + + + + + + + + + + + + + + + A adhesivity which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045003 + + normal adhesivity + + + + + + + + + + + + + + + + + + + + + An affinity which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045004 + + normal affinity + + + + + + + + + + + + + + + + + + + + + An age which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045005 + + normal age + + + + + + + + + + + + + + + + + + + + + An avidity which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045006 + + + normal avidity + + + + + + + + + + + + + + + + + + + + + A behavioural quality of a process inhering in a bearer by virtue of the bearer's exhibiting normal or average activity. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045007 + + normal behavioural activity + + + + + + + + + + + + + + + + + + + + + A cellular motility which is normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045008 + + normal cellular motility + + + + + + + + + + + + + + + + + + + + + A coiling which is normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045009 + + + normal coiling + + + + + + + + + + + + + + + + + + + + + A concentration which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045010 + + + normal concentration + + + + + + + + + + + + + + + + + + + + + A contractility which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045011 + + + normal contractility + + + + + + + + + + + + + + + + + + + + + A coordination which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045012 + + + normal coordination + + + + + + + + + + + + + + + + + + + + + A curvature which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045013 + + normal curvature + + + + + + + + + + + + + + + + + + + + + A distance which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045014 + + + normal distance + + + + + + + + + + + + + + + + + + + + + An efficiency which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045015 + + normal efficiency + + + + + + + + + + + + + + + + + + + + + An elasticity which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045016 + + normal elasticity + + + + + + + + + + + + + + + + + + + + + A fecundity which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045017 + + + normal fecundity + + + + + + + + + + + + + + + + + + + + + A female fertility which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045018 + + + normal female fertility + + + + + + + + + + + + + + + + + + + + + A female receptivity which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045019 + + + normal female receptivity + + + + + + + + + + + + + + + + + + + + + A fertility which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045020 + + + normal fertility + + + + + + + + + + + + + + + + + + + + + A flexibility which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045021 + + + normal flexibility + + + + + + + + + + + + + + + + + + + + + A fluid flow which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045022 + + normal fluid flow + + + + + + + + + + + + + + + + + + + + + A fluorescence which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045023 + + normal fluorescence + + + + + + + + + + + + + + + + + + + + + A force which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045024 + + normal force + + + + + + + + + + + + + + + + + + + + + A fragility which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045025 + + + normal fragility + + + + + + + + + + + + + + + + + + + + + A life span which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045026 + normal life span + + + + + + + + + + + + + + + + + + + + + A magnetism which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045027 + + + normal magnetism + + + + + + + + + + + + + + + + + + + + + A male fertility which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045028 + + + normal male fertility + + + + + + + + + + + + + + + + + + + + + A male receptivity which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045029 + + + normal male receptivity + + + + + + + + + + + + + + + + + + + + + A mass which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045030 + + normal mass + + + + + + + + + + + + + + + + + + + + + A density which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045031 + + normal mass density + + + + + + + + + + + + + + + + + + + + + A mobility which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045032 + + normal mobility + + + + + + + + + + + + + + + + + + + + + An odor quality of having relatively normal or average odor. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045033 + + normal odor + + + + + + + + + + + + + + + + + + + + + An osmolality which is relatively normal or average odor. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045034 + + + normal osmolality + + + + + + + + + + + + + + + + + + + + + An osmolarity which is relatively normal or average odor. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045035 + + + normal osmolarity + + + + + + + + + + + + + + + + + + + + + A permeability which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045036 + + + normal permeability + + + + + + + + + + + + + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a normal or average extent. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045037 + + normal phosphorylation + + + + + + + + + + + + + + + + + + + + + A photosensitivity which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045038 + + + + normal photosensitivity + + + + + + + + + + + + + + + + + + + + + A degree of pigmentation quality which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045039 + + + normal pigmentation + + + + + + + + + + + + + + + + + + + + + A position which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045040 + + normal position + + + + + + + + + + + + + + + + + + + + + An angle which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045041 + + + normal angle to + + + + + + + + + + + + + + + + + + + + + A distribution which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045042 + + normal distribution + + + + + + + + + + + + + + + + + + + + + An elevation which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045043 + + normal elevation + + + + + + + + + + + + + + + + + + + + + A pressure which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045044 + + normal pressure + + + + + + + + + + + + + + + + + + + + + A radioactivity which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045045 + + normal radioactivity + + + + + + + + + + + + + + + + + + + + + A radiopacity which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045046 + + + normal radiopacity + + + + + + + + + + + + + + + + + + + + + A resistance to a stimulus which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045047 + + + + normal resistance to + + + + + + + + + + + + + + + + + + + + + A sensitivity to irradiation which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045048 + + + normal sensitivity to irradiation + + + + + + + + + + + + + + + + + + + + + A sensitivity toward an external stimulus which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045049 + + + + normal sensitivity toward + + + + + + + + + + + + + + + + + + + + + A size quality which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045050 + + normal size + + + + + + + + + + + + + + + + + + + + + An area which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045051 + + normal area + + + + + + + + + + + + + + + + + + + + + A depth quality which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045052 + + normal depth + + + + + + + + + + + + + + + + + + + + + A height which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045053 + + normal height + + + + + + + + + + + + + + + + + + + + + A length quality which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045054 + + normal length + + + + + + + + + + + + + + + + + + + + + A diameter which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045055 + + normal diameter + + + + + + + + + + + + + + + + + + + + + An anterior-posterior diameter which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045056 + + normal anterior-posterior diameter + + + + + + + + + + + + + + + + + + + + + A perimeter which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045057 + + normal perimeter + + + + + + + + + + + + + + + + + + + + + A circumference which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045058 + + normal circumference + + + + + + + + + + + + + + + + + + + + + A thickness which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045059 + + normal thickness + + + + + + + + + + + + + + + + + + + + + A volume which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045060 + + + normal volume + + + + + + + + + + + + + + + + + + + + + A width which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045061 + + normal width + + + + + + + + + + + + + + + + + + + + + A solubility which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045062 + + + + normal solubility + + + + + + + + + + + + + + + + + + + + + A speed which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045063 + + normal speed + + + + + + + + + + + + + + + + + + + + + A strength which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045064 + + normal strength + + + + + + + + + + + + + + + + + + + + + A fatigability which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045065 + + + normal fatigability + + + + + + + + + + + + + + + + + + + + + A susceptibility toward an external stimulus which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045066 + + + + normal susceptibility toward + + + + + + + + + + + + + + + + + + + + + A temperature which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045067 + + normal temperature + + + + + + + + + + + + + + + + + + + + + A tendency which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045068 + + normal tendency + + + + + + + + + + + + + + + + + + + + + A threshold which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045069 + + + + normal threshold + + + + + + + + + + + + + + + + + + + + + A tolerance to an external stimulus which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045070 + + + normal tolerance to + + + + + + + + + + + + + + + + + + + + + A tonicity which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045071 + + + normal tonicity + + + + + + + + + + + + + + + + + + + + + A turgor which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045072 + + + normal turgor + + + + + + + + + + + + + + + + + + + + + + + + + + A quality of aprocess that has a value that is normal or average. + Luke Slater + 2017-12-21T14:11:01Z + quality + PATO:0045073 + normal process quality + + + + + + + + + + + + + + + + + + + + + + + + + + A variability which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045074 + + normal variability + + + + + + + + + + + + + + + + + + + + + + + + + + A variability which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045075 + + normal variability of color + + + + + + + + + + + + + + + + + + + + + + + + + + A variability of rate which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045076 + + normal variability of rate + + + + + + + + + + + + + + + + + + + + + + + + + + A variability of size which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045077 + + normal variability of size + + + + + + + + + + + + + + + + + + + + + + + + + + A variability of temperature which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045078 + + normal variability of temperature + + + + + + + + + + + + + + + + + + + + + A velocity which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045079 + + normal velocity + + + + + + + + + + + + + + + + + + + + + A virulence which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045080 + + normal virulence + + + + + + + + + + + + + + + + + + + + + A viscosity which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045081 + + normal viscosity + + + + + + + + + + + + + + + + + + + + + A waxiness which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045082 + + normal waxiness + + + + + + + + + + + + + + + + + + + + + A wetness which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045083 + + normal wetness + + + + + + + + + + + + + + + + + + + + + A duration quality of a process which is relatively normal. + quality + PATO:0045084 + + normal duration + + + + + + + + + + + + + + + + + + + + + A duration quality of temperature quality of a process which is relatively normal. + quality + PATO:0045085 + + normal duration of temperature + + + + + + + + + + + + + + + + + + + + + An occurrence which is relatively normal. + quality + PATO:0045086 + + normal occurrence + + + + + + + + + + + + + + + + + + + + + A frequency which is relatively normal. + quality + PATO:0045087 + + + normal frequency + + + + + + + + + + + + + + + + + + + + + A sensitivity of a process which is relatively normal. + quality + PATO:0045088 + + + normal sensitivity of a process + + + + + + + + + + + + + + + + + + + + + A sensitivity of occurrent to oxygen which is relatively normal. + quality + PATO:0045089 + + + normal sensitivity of a process to oxygen + + + + + + + + + The four cardinal directions or cardinal points are the directions north, east, south, and west, commonly denoted by their initials, N, E, S, W. East and west are at right angles to north and south, with east being in the clockwise direction of rotation from north and west being directly opposite east. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045090 + + cardinal direction + + + + + The four cardinal directions or cardinal points are the directions north, east, south, and west, commonly denoted by their initials, N, E, S, W. East and west are at right angles to north and south, with east being in the clockwise direction of rotation from north and west being directly opposite east. + Wikipedia:http://en.wikipedia.org/wiki/Cardinal_direction + + + + + + + + + North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west. + + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045091 + + north + + + + + North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west. + Wikipedia:http://en.wikipedia.org/wiki/North + + + + + + + + + East is one of the four cardinal directions or points of the compass. It is the opposite direction from west. + + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045092 + + east + + + + + East is one of the four cardinal directions or points of the compass. It is the opposite direction from west. + Wikipedia:http://en.wikipedia.org/wiki/East + + + + + + + + + South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west. + + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045093 + + south + + + + + South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west. + Wikipedia:http://en.wikipedia.org/wiki/South + + + + + + + + + West is one of the four cardinal directions or points of the compass. It is the opposite direction from east. + + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045094 + + west + + + + + West is one of the four cardinal directions or points of the compass. It is the opposite direction from east. + Wikipedia:http://en.wikipedia.org/wiki/West + + + + + + + + + The number of repeated events per unit time, occurring in a repeating series. (e.g. the number of heart beats occurring over 1 minute) + quality + PATO:0050000 + rate of occurence + + + + + The number of repeated events per unit time, occurring in a repeating series. (e.g. the number of heart beats occurring over 1 minute) + https://orcid.org/0000-0002-9943-9018 + + + + + + + + + The rate of output of a continuous process. Example include: growth rate, cell migration rate, enzyme reaction rate. + quality + PATO:0050001 + rate of continuous process + + + + + The rate of output of a continuous process. Example include: growth rate, cell migration rate, enzyme reaction rate. + https://orcid.org/0000-0002-9943-9018 + + + + + + + + + + + + + + + + + + + + + A spatial distribution of a process in which the process occupies a smaller length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type. + midori + 2019-07-29T14:22:24Z + quality + PATO:0055001 + decreased spatial extent of a process + + + + + A spatial distribution of a process in which the process occupies a smaller length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type. + orcid:0000-0003-4148-4606 + + + + + + + + + + + + + + + + + + + + + A spatial distribution of a process in which the process occupies a greater length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type. + midori + 2019-07-29T14:23:31Z + quality + PATO:0055002 + increased spatial extent of a process + + + + + A spatial distribution of a process in which the process occupies a greater length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type. + https://orcid.org/0000-0003-4148-4606 + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being present in one sex and absent from the other in members of the same species. + http://orcid.org/0000-0002-1373-1705 + 2019-08-23T08:46:30Z + quality + PATO:0060001 + sex-specific + + + + + A quality inhering in a bearer by virtue of the bearer's being present in one sex and absent from the other in members of the same species. + http://orcid.org/0000-0002-1373-1705 + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being present in males and absent from females in members of the same species. + http://orcid.org/0000-0002-1373-1705 + 2019-08-23T08:49:59Z + quality + PATO:0060002 + male-specific + + + + + A quality inhering in a bearer by virtue of the bearer's being present in males and absent from females in members of the same species. + http://orcid.org/0000-0002-1373-1705 + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being present in females and absent from males in members of the same species. + http://orcid.org/0000-0002-1373-1705 + 2019-08-23T08:51:22Z + quality + PATO:0060003 + female-specific + + + + + A quality inhering in a bearer by virtue of the bearer's being present in females and absent from males in members of the same species. + http://orcid.org/0000-0002-1373-1705 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2 + + + + + + + + + + + 1 + + + + + + + + + + + 2 + + + + + + + + + + + 2 + + + + + + + + + + + + + + + + + + + + + 2 + + + + + + + + + + + 1 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z + infer input from direct reg + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z), +e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity' + enabling an MF enables its parts + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction' + involved in BP + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + From ligand activity to has_ligand + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to "... -> overlaps" + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this. + inferring direct reg edge from input to regulatory subfunction + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + inferring direct neg reg edge from input to regulatory subfunction + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + inferring direct positive reg edge from input to regulatory subfunction + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + From has_ligand to ligand activity + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + effector input is compound function input + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Input of effector is input of its parent MF + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + if effector directly regulates X, its parent MF directly regulates X + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + if effector directly positively regulates X, its parent MF directly positively regulates X + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + if effector directly negatively regulates X, its parent MF directly negatively regulates X + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties). + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties). + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/pato-simple.json b/pato-simple.json new file mode 100644 index 00000000..650f2f30 --- /dev/null +++ b/pato-simple.json @@ -0,0 +1,58189 @@ +{ + "graphs" : [ { + "nodes" : [ { + "id" : "http://purl.obolibrary.org/obo/PATO_0000004", + "meta" : { + "definition" : { + "val" : "A quality of inhering in a bearer by virtue of the bearer's disposition to move freely.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Should be defined using translocation." + } ] + }, + "type" : "CLASS", + "lbl" : "mobility" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000488", + "meta" : { + "definition" : { + "val" : "A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "unresponsive", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000487" + }, { + "pred" : 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"http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "insertion depth" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002208", + "meta" : { + "definition" : { + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a spoon.", + "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/spoon-shaped" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T12:13:12Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "spoon-shaped" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001350", + "meta" : { + "definition" : { + "val" : "A physical quality inhering in a bearer by virtue of the rate of change of the bearer's angular velocity.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Angular_acceleration" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "angular acceleration" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001351", + "meta" : { + "definition" : { + "val" : "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given area.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Area_density" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "area density" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000020", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000014" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001354", + "meta" : { + "definition" : { + "val" : "A optical quality inhering in a bearer by virtue of the bearer's exhibiting low opacity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : 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Is this the same as genetic incompatibility? 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"CLASS", + "lbl" : "raised" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000037", + "meta" : { + "definition" : { + "val" : "A physical quality inhering in a bearer by virtue of the bearer's density, firmness, or viscosity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "firmness", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "consistency" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000036", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete 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I don't know what this means." + } ] + }, + "type" : "CLASS", + "lbl" : "duration of temperature" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001795", + "meta" : { + "definition" : { + "val" : "A coiling which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high coiling", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001796" + } ] + }, + "type" : "CLASS", + "lbl" : "increased coiling" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000461", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#abnormal_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "average", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000460" + } ] + }, + "type" : "CLASS", + "lbl" : "normal" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001311", + "meta" : { + "definition" : { + "val" : "A duration of temperature which is lesser relative to the normal or average enduring or continuing in time.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001312" + } ] + }, + "type" : "CLASS", + "lbl" : "decreased duration of temperature" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001792", + "meta" : { + "definition" : { + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located on left side of from the a another entity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "left side of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000464", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of not being clearly visible.", + "xrefs" : [ "thefreedictionary:thefreedictionary" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "faint", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000463" + } ] + }, + "type" : "CLASS", + "lbl" : "inconspicuous" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000463", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of being clearly visible.", + "xrefs" : [ "thefreedictionary:thefreedictionary" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "distinct", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000464" + } ] + }, + "type" : "CLASS", + "lbl" : "conspicuous" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001793", + "meta" : { + "definition" : { + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located on right side of a another entity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "right side of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000477", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete good value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001325", + "meta" : { + "definition" : { + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's having equal proportion around a central point or axis.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "centric", + "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0002-2908-3327" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "radial symmetry" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001326", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete left-right symmetry" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000476", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete bad value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000479", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete regulation value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001323", + "meta" : { + "definition" : { + "val" : "A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Area" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "area" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001324", + "meta" : { + "definition" : { + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being symmetric about a plane running from its frontal end to its caudal end (head to tail), and has nearly identical right and left halves.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Bilateral_symmetry" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "left-right symmetry", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "pennate", + "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0002-2908-3327" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "bilateral symmetry" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000478", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete poor value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001329", + "meta" : { + "definition" : { + "val" : "A flavor quality inhering in a bearer by virtue of the bearer's having flavour.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "flavourful" + }, { + "id" : "http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to", + "meta" : { + "definition" : { + "val" : "q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.", + "xrefs" : [ "PATOC:CJM" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "PROPERTY", + "lbl" : "different_in_magnitude_relative_to" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001327", + "meta" : { + "definition" : { + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by only one longitudinal plane passing through the axis.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "zygomorphic" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001328", + "meta" : { + "definition" : { + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by any longitudinal plane passing through the axis.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "actinomorphic" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000471", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete low" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000470", + "meta" : { + "definition" : { + "val" : "An amount which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "present in greater numbers in organism", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "accessory", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "increased", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "supernumerary", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "increased number", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001997" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000650" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000420" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "increased amount" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000473", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative_quality value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001321", + "meta" : { + "definition" : { + "val" : "An angle which is 90 degrees to another entity.", + "xrefs" : [ "thesaurus.math:thesaurus.math" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "right angle to" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000472", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete quality value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001322", + "meta" : { + "definition" : { + "val" : "An angle which is 180 degrees to another entity.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: decide on correct parentage." + } ] + }, + "type" : "CLASS", + "lbl" : "straight angle to" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000475", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete threshability value" + }, { + "id" : "http://purl.obolibrary.org/obo/pato#towards", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Relation binding a relational quality or disposition to the relevant type of entity." + } ] + }, + "type" : "PROPERTY", + "lbl" : "towards" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000474", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete shattering value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001320", + "meta" : { + "definition" : { + "val" : "A pilosity quality of being covered with short hairs or soft down.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "pubescent hair" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000408", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001499" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : 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interaction with another entity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "dissociated", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "dissociated from" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000409", + "meta" : { + "definition" : { + "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting an equatorial diameter greater than its polar diameter.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "oblate spheroid", 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"lbl" : "obsolete morphology value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000884", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete hybrid fertility value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001732", + "meta" : { + "definition" : { + "val" : "A quality inhering in a plant by virtue of the bearer's disposition to not shed any body part.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "non-deciduous (any body 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"http://purl.obolibrary.org/obo/PATO_0000402", + "meta" : { + "definition" : { + "val" : "A branchiness quality inhering in a bearer by virtue of the bearer's having branches.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "ramified", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "ramiform", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000414" + } ] + }, + "type" : "CLASS", + "lbl" : "branched" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001730", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue 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"http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "deciduous (plant)" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000404", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals).", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "helical", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "helicoid", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "helicoidal", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "spiral", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "helix-shaped", + "xrefs" : [ ] + } ], + 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"pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality." + } ] + }, + "type" : "PROPERTY", + "lbl" : "reciprocal_of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000418", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative number value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001749", + "meta" : { + "definition" : { + "val" : "A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth.", + "xrefs" : [ "PATOC:mh" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pedomorphic growth", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "hypoplastic growth", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001752" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "paedomorphic growth" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0020001", + "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in an individual based upon genotypic composition that confers the capability for an organism to differentiate male gonads.", + "xrefs" : [ "PATOC:MAH" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that the chromosomal constitution of genotypic sex varies in different organisms. 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"lbl" : "obsolete immunoglobulin concentration value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001145", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete ig m concentration value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002476", + "meta" : { + "definition" : { + "val" : "A position quality inhering in a bearer by virtue of the bearer's forming the end of another entity.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T12:18:08Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "terminal" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000297", + "meta" : { + "definition" : { + "val" : "A quality of a process which ends earlier than the natural end time or reference process.", + "xrefs" : [ "PATOC:LC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "abolished", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "incomplete", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: the definition is incorrect. See absent." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001508" + } ] + }, + "type" : "CLASS", + "lbl" : "arrested" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002477", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's disposition to breaks without significant deformation (strain) when subjected to stress.", + "xrefs" : [ "wikipedia:http://en.wikipedia.org/wiki/Brittleness" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T12:25:03Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "brittle" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001146", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete resistance value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000296", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete speed value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002474", + "meta" : { + "definition" : { + "val" : "A flavor quality inhering in a bearer by virtue of the bearer's having an acrid, sharp, or disagreeable flavor.", + "xrefs" : [ "PATOC:LC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T12:09:15Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "bitter" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000299", + "meta" : { + "definition" : { + "val" : "A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000300" + }, { + "pred" : 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"http://purl.obolibrary.org/obo/PATO_0000291", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative respiratory rate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000290", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute respiratory rate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002007", + "meta" : { + "definition" : { + "val" : "A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. 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Or: a shape with cavities. 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"id" : "http://purl.obolibrary.org/obo/PATO_0002483", + "meta" : { + "definition" : { + "val" : "Positional quality in which an entity is located outside of another entity.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-30T06:06:27Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "external to" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001152", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ 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In OWL this is equivalent to a restriction on the OBO_REL:has_part relation with cardinality=0, i.e has_part 0 E2." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001557" + } ] + }, + "type" : "CLASS", + "lbl" : "lacks all parts of type" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002484", + "meta" : { + "definition" : { + "val" : "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of an inverted letter V.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "chevron shaped", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + 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This case includes the limit case, where the bearer lacks all parts of the specified type.", + "xrefs" : [ "PATOC:CJM" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "loss of", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "lacks parts or has fewer parts of type" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001515", + "meta" : { + "definition" : { + "val" : "A color quality inhering in a bearer by virtue of the bearer's being uneven in color.", + "xrefs" : [ "PATOC:NC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "murky", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "variable color" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000669", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete concentration_unit" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001992", + "meta" : { + "definition" : { + "val" : "An organismal quality inhering in a bearer by virtue of the bearer's consisting cells.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "cellularity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000660", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete angle_quantity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001993", + "meta" : { + "definition" : { + "val" : "A cellularity quality inhering in a bearer by virtue of the bearer's consisting of more than one cell.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "multicellular" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000662", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete volume_quantity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001990", + "meta" : { + "definition" : { + "val" : "A duration quality of a process inhering in a disease by virtue of the bearer's duration of an impairment of health or of a condition of abnormal functioning.", + "xrefs" : [ "PATOC:GVG" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "MAH: I think this term should be obsoleted. Is it used?" + } ] + }, + "type" : "CLASS", + "lbl" : "duration of disease" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001991", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to being capable of indefinite growth or division.", + "xrefs" : [ "answers.com:answers.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "immortal" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000661", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete solid substance 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"xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + } ] + }, + "type" : "CLASS", + "lbl" : "normal tolerance to" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002341", + "meta" : { + "definition" : { + "val" : "A quality of being covered with short, dense, matted hairs.", + "xrefs" : [ "thefreedictionary:www.thefreedictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : 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"http://purl.obolibrary.org/obo/PATO_0001494", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001493" + } ] + }, + "type" : "CLASS", + "lbl" : "hypotrophic growth" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0045071", + "meta" : { + "definition" : { + "val" : "A tonicity which is relatively normal or average", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, 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"true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative rate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000162", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute rate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0045072", + "meta" : { + "definition" : { + "val" : "A turgor which is relatively normal or average", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : 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"http://purl.obolibrary.org/obo/PATO_0002342", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's being a cupule, with a structure similar to a cup that also encloses the ovule in partiality.", + "xrefs" : [ "PATOC:DD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-01-31T02:59:07Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "cupulate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001495", + "meta" : { + "definition" : { + "val" : "A concave quality inhering in a bearer by virtue of the bearer's shape being a V-shaped cut.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + }, + 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To update annotations, consider the following term 'quality of a liquid; PATO:0001548 '" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete liquid substance" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001473", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's being present in two copies.", + "xrefs" : [ "Dictionary.com:Dictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "doubled", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "duplicated" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000144", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a solid; 'PATO:0001546'" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete solid substance" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001474", + "meta" : { + "definition" : { + "val" : "An oriented quality inhering in a bearer by virtue of the bearer's axis being positioned forward.", + "xrefs" : [ "bdid:bdid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "anteverted" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002321", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002322" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-12T12:50:59Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "hypoelliptic" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0045011", + "meta" : { + "definition" : { + "val" : "A contractility which is relatively normal or average.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + } ] + }, + "type" : "CLASS", + "lbl" : "normal contractility" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0045012", + "meta" : { + "definition" : { + "val" : "A coordination which is relatively normal or average.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + } ] + }, + "type" : "CLASS", + "lbl" : "normal coordination" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0045013", + "meta" : { + "definition" : { + "val" : "A curvature which is relatively normal or average.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + } ] + }, + "type" : "CLASS", + "lbl" : "normal curvature" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0045014", + "meta" : { + "definition" : { + "val" : "A distance which is relatively normal or average.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + } ] + }, + "type" : "CLASS", + "lbl" : "normal distance" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0045010", + "meta" : { + "definition" : { + "val" : "A concentration which is relatively normal or average.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "normal concentration" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0045026", + "meta" : { + "definition" : { + "val" : "A life span which is relatively normal or average.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + } ] + }, + "type" : "CLASS", + "lbl" : "normal life span" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0045027", + "meta" : { + "definition" : { + "val" : "A magnetism which is relatively normal or average.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + } ] + }, + "type" : "CLASS", + "lbl" : "normal magnetism" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0045028", + "meta" : { + "definition" : { + "val" : "A male fertility which is relatively normal or average.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "normal male fertility" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0045029", + "meta" : { + "definition" : { + "val" : "A male receptivity which is relatively normal or average.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "normal male receptivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000158", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000057" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001006", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute latency" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002337", + "meta" : { + "definition" : { + "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; characterized with an egg-shaped form crossed with a lance-head shaped form.", + "xrefs" : [ "PATOC:DD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-01-31T02:43:15Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "lance-ovate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001007", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative latency" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002338", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle together forming three angles; attached at the broad end.", + "xrefs" : [ "PATOC:DD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-01-31T02:46:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "lanceolate-triangular" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000157", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute temporal" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001488", + "meta" : { + "definition" : { + "val" : "A cellular quality inhering in a cell by virtue of whether the bearer exhibits the ability to move spontaneously.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Term should be obsoleted and the GO term cellular motility should be used instead." + } ] + }, + "type" : "CLASS", + "lbl" : "cellular motility" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002335", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being dome-shaped.", + "xrefs" : [ "PATOC:dd" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-01-31T02:32:14Z" + } ] + }, + "type" : "CLASS", + "lbl" : "tholiform" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001004", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute alternation value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001005", + "meta" : { + "definition" : { + "val" : "A time quality inhering in a bearer by virtue of the time it elapses for the bearer to respond to a stimulus.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This class is a candidate for obsoletion. The definition is not clear, and the placement under \"delayed\" is not consistent with the definition." + } ] + }, + "type" : "CLASS", + "lbl" : "latency" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002336", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having triangular faces that meet at a common point and containing a polygonal shaped base.", + "xrefs" : [ "PATOC:DD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-01-31T02:35:02Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "pyramidal" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000159", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute incidence" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001489", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001433" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002339", + "meta" : { + "definition" : { + "val" : "A quality of being covered with stiff or rough hairs.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-01-31T02:51:37Z" + } ] + }, + "type" : "CLASS", + "lbl" : "hispid" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001008", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute latency value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001009", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative latency value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000150", + "meta" : { + "definition" : { + "val" : "A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "texture" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001482", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line.", + "xrefs" : [ "Dictionary.com:Dictionary.com" ] + 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virtue of the bearer's elastic tension that facilitate response to stimuli.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "tone", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: we need a clearer differentium between this and contractility - or merge?" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001498" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "tonicity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000106", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete acid sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001437", + "meta" : { + "definition" : { + "val" : "A attachment quality inhering in a bearer by virtue of the bearer's inability to move about.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sessile_(zoology)" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "sessile (sensu zoology)" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000109", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete water sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001438", + "meta" : { + "definition" : { + "val" : "A attachment quality inhering in a bearer by virtue of the bearer's having or being supported by a pedicel or pedicle.", + "xrefs" : [ "MedTerms:MedTerms" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "pedicellate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000108", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete salt sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000581", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative weight value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000580", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute weight value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001431", + "meta" : { + "definition" : { + "val" : "An emergent molecular quality that arises by virtue of the bearer's disposition to exhibit molecular attraction to another entity in contact.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "adhesiveness", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "stickiness", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "The definition is general enough to cover adhesion arising from different kinds of chemical bonding/forces, although for PATO this term will most commonly used for cellular adhesion. See also GO:0031589 \"cell-substrate adhesion\"." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "adhesivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000583", + "meta" : { + "definition" : { + "val" : "A weight which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low weight", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "light weight", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000582" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "decreased weight" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000582", + "meta" : { + "definition" : { + "val" : "A weight which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high weight", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "heavy", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000583" + } ] + }, + "type" : "CLASS", + "lbl" : "increased weight" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001432", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's decomposition into component parts.", + "xrefs" : [ "Medical-dictionary:Medical-dictionary" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "decayed" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000585", + "meta" : { + "definition" : { + "val" : "A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ).", + "xrefs" : [ "PATOC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "shrunken", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000412" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000584" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "hypotrophic" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000101", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete soil nutrient sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000584", + "meta" : { + "definition" : { + "val" : "An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ).", + "xrefs" : [ "PATOC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "hypertrophy", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000585" + } ] + }, + "type" : "CLASS", + "lbl" : "hypertrophic" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000100", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete soil composition sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001430", + "meta" : { + "definition" : { + "val" : "An medium acidity quality inhering in a solution by virtue of the bearer's a low concentration of H+ ions.", + "xrefs" : [ "chemicool:chemicool" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "alkaline" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000114", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete temperature sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001446", + "meta" : { + "definition" : { + "val" : "A wholeness quality inhering in a bearer by virtue of the bearer's including all its components.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "whole" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000598", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative width value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001447", + "meta" : { + "definition" : { + "val" : "A composition quality inhering in an bearer by virtue of the bearer's being encrusted or impregnated with calcium carbonate (CHEBI:3311).", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "calcification", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "calcareous", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "calcified" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000113", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete radiation sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000597", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute width value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001444", + "meta" : { + "definition" : { + "val" : "A broken quality inhering in a bearer by virtue of the bearer's being broken open.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "hemorrhaged", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "ruptured", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "cracked", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "fractured", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "burst", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "fragmented", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "torn", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "split", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001820" + }, { + "pred" : 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} ] + }, + "type" : "CLASS", + "lbl" : "size" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001448", + "meta" : { + "definition" : { + "val" : "A composition quality inhering in an bearer by virtue of the bearer's being hardened by the deposition of calcium into bone.", + "xrefs" : [ "MAMMALOGY:MAMMALOGY" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "ossified" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001449", + "meta" : { + "definition" : { + "val" : "A composition quality inhering in an bearer by virtue of the bearer's cartilage quantities.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Cartilaginous" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" 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"meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute volume" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000910", + "meta" : { + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "intercross infertile", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete intercross sterile" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000912", + "meta" : { + "definition" : { + "val" : "A rate which is relatively high.", + "xrefs" : [ "PATO:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high rate", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "fast rate", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000911" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "increased rate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000911", + "meta" : { + "definition" : { + "val" : "A rate which is relatively low.", + "xrefs" : [ "PATO:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "slow rate", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000912" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "decreased rate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002269", + "meta" : { + "definition" : { + "val" : "A structural quality of the collection or massing of one physical object within another physical object.", + "xrefs" : [ "PATOC:CVC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "pooled", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-26T01:57:02Z" + } ] + }, + "type" : "CLASS", + "lbl" : "accumulation" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000084", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative rhythym" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002263", + "meta" : { + "definition" : { + "val" : "A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group.", + "xrefs" : [ "url:http://en.wikipedia.org/wiki/Dephosphorylation" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-16T09:04:21Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002220" + } ] + }, + "type" : "CLASS", + "lbl" : "dephosphorylated" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000083", + "meta" : { + "definition" : { + "val" : "A quality that exists by virtue of being a particular point in the time of a cycle.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "phase" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002264", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being arranged in a systematic fashion.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-16T10:22:52Z" + } ] + }, + "type" : "CLASS", + "lbl" : "organization quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000086", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002261", + "meta" : { + "definition" : { + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's location within another entity.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-09T09:36:56Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + } ] + }, + "type" : "CLASS", + "lbl" : "located in" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002262", + "meta" : { + "definition" : { + "val" : "A quality inhering in a protein or a molecule by virtue of the addition of a phosphate (PO4) group to the bearer.", + "xrefs" : [ "url:http://en.wikipedia.org/wiki/Phosphorylation" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-16T08:57:56Z" + } ] + }, + "type" : "CLASS", + "lbl" : "phosphorylation" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000050", + "meta" : { + "definition" : { + "val" : "a core relation that holds between a part and its whole", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "BFO:0000050" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "is part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this day is part of this year (occurrent parthood)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "part_of" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my brain is part of my body (continuant parthood, two material entities)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." + } ] + }, + "type" : "PROPERTY", + "lbl" : "part of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000085", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "sensitivity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "sensitivity toward" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000088", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute disease sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002267", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-05T12:34:31Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "edge shape" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002268", + "meta" : { + "definition" : { + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being located in a position equidistant from edges.", + "xrefs" : [ "PATOC:OREGON" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-05T01:09:32Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "centered" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000087", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete disease sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002265", + "meta" : { + "definition" : { + "val" : "A behavioral quality of a process inhering in a bearer by virtue of the bearer's disposition to exhibit marked activity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-21T06:56:58Z" + } ] + }, + "type" : "CLASS", + "lbl" : "behavioural activity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000089", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative disease sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002266", + "meta" : { + "definition" : { + "val" : "A shape that inheres in a 3 dimensional entity.", + "xrefs" : [ "PATOC:OREGON" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-05T12:31:16Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + } ] + }, + "type" : "CLASS", + "lbl" : "3-D shape" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000051", + "meta" : { + "definition" : { + "val" : "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2.", + "xrefs" : [ "PATOC:CJM" ] + }, + "xrefs" : [ { + "val" : "BFO:0000051" + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this year has part this day (occurrent parthood)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_part" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_part" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my body has part my brain (continuant parthood, two material entities)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has part" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has_part" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000080", + "meta" : { + "definition" : { + "val" : "A physical quality of a process inhering in a bearer by virtue of the size of the bearer's maximum displacement from the 'normal' position, when periodic motion is taking place.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "amplitude" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002260", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's being partially upright in position or posture.", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "semi upright", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-08T03:27:21Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + } ] + }, + "type" : "CLASS", + "lbl" : "semi erect" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000082", + "meta" : { + "definition" : { + "val" : "A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm.", + "xrefs" : [ "reference.com:reference.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + 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"http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "haplodiploid" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000064", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute percentage" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001392", + "meta" : { + "definition" : { + "val" : "A polyploidy quality inhering in a bearer by virtue of the bearer's chromosome number being increased by endomitosis and for which the degree of ploidy is proportional to the number of times that endomitosis has taken place.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Endopolyploid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "endopolyploid" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000063", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete percentage" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002240", + "meta" : { + "definition" : { + "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop.", + "xrefs" : [ "url:wordnetweb.princeton.edu/perl/webwn" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "drop shaped", + 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"quality" + } ] + }, + "type" : "CLASS", + "lbl" : "euploid" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000066", + "meta" : { + "definition" : { + "val" : "A texture quality inhering in a bearer by virtue of the bearer's having hair or bristles.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "pilosity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002245", + "meta" : { + "definition" : { + "val" : "A force which relative high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "increased force amplitude", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : 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"http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "self-renewal" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000065", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative percentage" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001399", + "meta" : { + "definition" : { + "val" : "A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers and extraembryonic cell types.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Totipotent" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "totipotent" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002246", + "meta" : { + "definition" : { + "val" : "A force which is relative low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "decreased force amplitude", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-04T11:13:13Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002245" + } ] + }, + "type" : "CLASS", + "lbl" : "decreased force" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002243", + "meta" : { + "definition" : { + "val" : "A physical quality inhering in a fluid (liquid or gas) by virtue of the amount of fluid which passes through a given surface per unit time.", + "xrefs" : [ "url:http://en.wikipedia.org/wiki/Volumetric_flow_rate" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "volumetric flow rate", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "volume flow rate", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-28T03:00:20Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : 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Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.", + "xrefs" : [ "PATOC:CJM" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'." + } ] + }, + "type" : "PROPERTY", + "lbl" : "increased_in_magnitude_relative_to" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000067", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative pilosity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001390", + "meta" : { + "definition" : { + "val" 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+subsetdef: abnormal_slim "Abnormal/normal slim" +subsetdef: absent_slim "Absent/present slim" +subsetdef: attribute_slim "Attribute slim" +subsetdef: cell_quality "cell_quality" +subsetdef: disposition_slim "Disposition slim" +subsetdef: hpo_slim "Human phenotype slim" +subsetdef: mpath_slim "Pathology slim" +subsetdef: relational_slim "Relational slim: types of quality that require an additional entity in order to exist" +subsetdef: scalar_slim "Scalar slim" +subsetdef: value_slim "Value slim" +default-namespace: quality +ontology: pato/pato-simple + +[Term] +id: PATO:0000000 +name: obsolete pato +is_obsolete: true + +[Term] +id: PATO:0000001 +name: quality +alt_id: PATO:0000072 +def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" [PATOC:GVG] + +[Term] +id: PATO:0000002 +name: obsolete value +is_obsolete: true + +[Term] +id: PATO:0000003 +name: obsolete assay +is_obsolete: true + +[Term] +id: PATO:0000004 +name: mobility +def: "A quality of inhering in a bearer by virtue of the bearer's disposition to move freely." [PATOC:GVG] +comment: Should be defined using translocation. +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000005 +name: obsolete absolute activity +is_obsolete: true + +[Term] +id: PATO:0000006 +name: obsolete process +is_obsolete: true + +[Term] +id: PATO:0000007 +name: obsolete relative activity +is_obsolete: true + +[Term] +id: PATO:0000008 +name: speed +def: "A physical quality inhering in a bearer by virtue of the bearer's scalar absolute value of the rate of change of the bearer's position." [Wikipedia:http\://en.wikipedia.org/wiki/Velocity] +subset: attribute_slim +subset: scalar_slim +synonym: "velocity" RELATED [] +is_a: PATO:0001906 ! movement quality + +[Term] +id: PATO:0000009 +name: obsolete absolute speed +is_obsolete: true + +[Term] +id: PATO:0000010 +name: obsolete relative speed +is_obsolete: true + +[Term] +id: PATO:0000011 +name: age +def: "A time quality inhering in a bearer by virtue of how long the bearer has existed." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000165 ! time + +[Term] +id: PATO:0000012 +name: obsolete absolute age +is_obsolete: true + +[Term] +id: PATO:0000013 +name: obsolete relative age +is_obsolete: true + +[Term] +id: PATO:0000014 +name: color +alt_id: PATO:0000020 +def: "A composite chromatic quality composed of hue, saturation and intensity parts." [PATOC:GVG] +subset: attribute_slim +synonym: "colour" EXACT [] +synonym: "relative color" EXACT [] +is_a: PATO:0000051 ! morphology +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0000015 +name: color hue +def: "A chromatic scalar-circular quality inhering in an object that manifests in an observer by virtue of the dominant wavelength of the visible light; may be subject to fiat divisions, typically into 7 or 8 spectra." [PATOC:cjm] +subset: attribute_slim +is_a: PATO:0001301 ! chromatic property + +[Term] +id: PATO:0000016 +name: color brightness +def: "A scalar optical property that is the intensity, value or amount of perceived light." [PATOC:MAH] +comment: Color brightness refers to the intensity, lightness or value of the light present. Think of this as a dimmer switch. +subset: attribute_slim +synonym: "color intensity" EXACT [] +synonym: "color lightness" EXACT [] +synonym: "color value" EXACT [] +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0000017 +name: color saturation +def: "A scalar chromatic property that is the degree of purity of perceived light." [PATOC:GVG] +comment: Color saturation refers to the amount of white light or gray paint mixed in with the hue (single wavelength) and is a measure of color purity. +subset: attribute_slim +is_a: PATO:0001301 ! chromatic property + +[Term] +id: PATO:0000018 +name: fluorescence +def: "A luminous flux quality inhering in a bearer by virtue of the bearer's emitting longer wavelength light following the absorption of shorter wavelength radiation; fluorescence is common with aromatic compounds with several rings joined together." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001296 ! luminous flux + +[Term] +id: PATO:0000019 +name: color pattern +def: "A chromatic property that is the relative position of different hues or degrees of saturation." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0000021 +name: compatibility +def: "A quality inhering in a bearer by virtue of the bearer's disposition to harmonious coexistence." [PATOC:GVG] +comment: Needs redefined or obsoleted. Is this the same as genetic incompatibility? Moved to organismal quality. +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0000022 +name: obsolete gametophytic compatability +is_obsolete: true + +[Term] +id: PATO:0000023 +name: obsolete relative compatability +is_obsolete: true + +[Term] +id: PATO:0000024 +name: obsolete sporophytic compatability +is_obsolete: true + +[Term] +id: PATO:0000025 +name: composition +alt_id: PATO:0002015 +def: "A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts." [PATOC:GVG] +comment: For example calcium composition (which may inhere in bone), haemoglobin composition (which may inhere in blood). +subset: attribute_slim +subset: scalar_slim +synonym: "composed of" EXACT [] +synonym: "compositionality" EXACT [] +synonym: "content" EXACT [] +synonym: "structure, composition" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000026 +name: obsolete carbohydrate composition +is_obsolete: true + +[Term] +id: PATO:0000027 +name: obsolete electrolyte composition +is_obsolete: true + +[Term] +id: PATO:0000028 +name: obsolete macromolecular composition +is_obsolete: true + +[Term] +id: PATO:0000029 +name: obsolete protein composition +is_obsolete: true + +[Term] +id: PATO:0000030 +name: obsolete enzyme composition +is_obsolete: true + +[Term] +id: PATO:0000031 +name: obsolete metabolite composition +is_obsolete: true + +[Term] +id: PATO:0000032 +name: obsolete secondary product composition +is_obsolete: true + +[Term] +id: PATO:0000033 +name: concentration of +def: "A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance." [Wikipedia:http\://en.wikipedia.org/wiki/concentration] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +synonym: "concentration" EXACT [] +is_a: PATO:0002182 ! molecular quality + +[Term] +id: PATO:0000034 +name: obsolete protein concentration +is_obsolete: true + +[Term] +id: PATO:0000035 +name: obsolete carbohydrate concentration +is_obsolete: true + +[Term] +id: PATO:0000036 +name: obsolete water content +is_obsolete: true + +[Term] +id: PATO:0000037 +name: consistency +def: "A physical quality inhering in a bearer by virtue of the bearer's density, firmness, or viscosity." [PATOC:GVG] +subset: attribute_slim +subset: mpath_slim +synonym: "firmness" RELATED [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000038 +name: obsolete gel consistency +is_obsolete: true + +[Term] +id: PATO:0000039 +name: direction +def: "A physical quality inhering in a bearer by virtue of the bearer's orientation in space." [thesaurus.maths:thesaurus.maths] +comment: TODO: consider merging with angular placement. +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000040 +name: distance +def: "A quality that is the extent of space between two entities." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000041 +name: obsolete absolutedistance +is_obsolete: true + +[Term] +id: PATO:0000042 +name: obsolete relative distance +is_obsolete: true + +[Term] +id: PATO:0000043 +name: flavor +def: "A quality of a physical entity inhering in a bearer by virtue of whether the bearer's molecules are being perceived by a taste and odorant receptors." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000044 +name: frequency +def: "A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time." [Wikipedia:http\://en.wikipedia.org/wiki/frequency] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0050000 ! rate of occurence + +[Term] +id: PATO:0000045 +name: obsolete absolute frequency +is_obsolete: true + +[Term] +id: PATO:0000046 +name: obsolete relative frequency +is_obsolete: true + +[Term] +id: PATO:0000047 +name: biological sex +def: "An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved." [MGED:MGED] +subset: attribute_slim +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000048 +name: hardness +def: "A physical quality inhering in a bearer by virtue of the bearer's resistance to pressure, being broken, or pierced" [merriam-webster:merriam-webster] +subset: attribute_slim +subset: disposition_slim +synonym: "impenetrability" RELATED [] +synonym: "toughness" RELATED [] +is_a: PATO:0001546 ! quality of a solid + +[Term] +id: PATO:0000049 +name: intensity +def: "A quality inhering in a bearer by virtue of the bearer's possessing or displaying a distinctive feature in type or degree or effect or force." [PATOC:GVG] +subset: attribute_slim +subset: hpo_slim +is_a: PATO:0000068 ! qualitative + +[Term] +id: PATO:0000050 +name: life span +def: "A time quality inhering in a bearer by virtue of the bearer's expected maximum age." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000165 ! time + +[Term] +id: PATO:0000051 +name: morphology +def: "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0000052 +name: shape +alt_id: PATO:0001647 +def: "A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc)." [PATOC:GVG] +comment: Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects. +subset: attribute_slim +synonym: "relational shape quality" EXACT [] +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000054 +name: obsolete absolute number +is_obsolete: true + +[Term] +id: PATO:0000055 +name: obsolete relative number +is_obsolete: true + +[Term] +id: PATO:0000056 +name: trophic quality +def: "An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth." [Wikipedia:http\://en.wikipedia.org/wiki/Trophic_level] +subset: attribute_slim +subset: disposition_slim +synonym: "nutritional quality" RELATED [] +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000057 +name: occurrence +alt_id: PATO:0000156 +alt_id: PATO:0000158 +def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence." [PATOC:GVG] +subset: attribute_slim +subset: hpo_slim +synonym: "incidence" EXACT [] +synonym: "temporal" BROAD [] +is_a: PATO:0002323 ! temporal distribution quality + +[Term] +id: PATO:0000058 +name: odor +def: "A physical quality inhering in a bearer by virtue of the bearer's molecules being are aerially dispersed and perceived by an odorant receptor." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000059 +name: obsolete parental quality +def: "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a parent." [WordNet:WordNet] +subset: attribute_slim +synonym: "parental type" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0000060 +name: spatial pattern +alt_id: PATO:0000132 +alt_id: PATO:0001565 +def: "A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts." [PATOC:GVG] +subset: attribute_slim +subset: hpo_slim +synonym: "distribution" EXACT [] +synonym: "pattern" RELATED [] +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000061 +name: obsolete relative pattern +is_obsolete: true + +[Term] +id: PATO:0000062 +name: sleep pattern +def: "A sleep quality defined by the mathematic properties of the relative time frames of the sleep cycle." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001530 ! behavioral quality of a process + +[Term] +id: PATO:0000063 +name: obsolete percentage +is_obsolete: true + +[Term] +id: PATO:0000064 +name: obsolete absolute percentage +is_obsolete: true + +[Term] +id: PATO:0000065 +name: obsolete relative percentage +is_obsolete: true + +[Term] +id: PATO:0000066 +name: pilosity +def: "A texture quality inhering in a bearer by virtue of the bearer's having hair or bristles." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0000067 +name: obsolete relative pilosity +is_obsolete: true + +[Term] +id: PATO:0000068 +name: qualitative +comment: TODO: define this or obsolete it and move children somewhere else. +is_a: PATO:0000001 ! quality + +[Term] +id: PATO:0000069 +name: deviation(from_normal) +def: "A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000068 ! qualitative + +[Term] +id: PATO:0000070 +name: amount +alt_id: PATO:0000053 +alt_id: PATO:0000071 +alt_id: PATO:0001169 +alt_id: PATO:0001226 +def: "The number of entities of this type that are part of the whole organism." [PATOC:GVG] +comment: This term was originally named "presence". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10. +subset: attribute_slim +synonym: "count in organism" RELATED [] +synonym: "number" RELATED [] +synonym: "presence" RELATED [] +synonym: "presence or absence in organism" EXACT [] +synonym: "quantitative" EXACT [] +is_a: PATO:0000068 ! qualitative +relationship: reciprocal_of PATO:0001555 ! has number of + +[Term] +id: PATO:0000073 +name: obsolete relative_quality +is_obsolete: true + +[Term] +id: PATO:0000074 +name: obsolete shattering +is_obsolete: true + +[Term] +id: PATO:0000075 +name: obsolete threshability +is_obsolete: true + +[Term] +id: PATO:0000076 +name: obsolete regulation +is_obsolete: true + +[Term] +id: PATO:0000077 +name: response to +def: "A quality inhering in a bearer by virtue of the whether the bearer's disposition to react to a stimulus or an agent." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +subset: scalar_slim +synonym: "reactivity" RELATED [GOC:CJM] +synonym: "response" RELATED [] +synonym: "responsivity" RELATED [] +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000078 +name: rhythm quality +def: "A quality of a single process inhering in a bearer by virtue of the bearer's movement or variation characterized by the regular recurrence or alternation of different quantities or conditions." [answers.com:answers.com] +subset: attribute_slim +is_a: PATO:0002323 ! temporal distribution quality + +[Term] +id: PATO:0000079 +name: obsolete absolute rhythym +is_obsolete: true + +[Term] +id: PATO:0000080 +name: amplitude +def: "A physical quality of a process inhering in a bearer by virtue of the size of the bearer's maximum displacement from the 'normal' position, when periodic motion is taking place." [thesaurus.maths:thesaurus.maths] +subset: attribute_slim +is_a: PATO:0002062 ! physical quality of a process + +[Term] +id: PATO:0000082 +name: persistence +def: "A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm." [reference.com:reference.com] +subset: attribute_slim +is_a: PATO:0000078 ! rhythm quality + +[Term] +id: PATO:0000083 +name: phase +def: "A quality that exists by virtue of being a particular point in the time of a cycle." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0002323 ! temporal distribution quality + +[Term] +id: PATO:0000084 +name: obsolete relative rhythym +is_obsolete: true + +[Term] +id: PATO:0000085 +name: sensitivity toward +def: "A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "sensitivity" EXACT [] +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000086 +name: obsolete absolute sensitivity +is_obsolete: true + +[Term] +id: PATO:0000087 +name: obsolete disease sensitivity +is_obsolete: true + +[Term] +id: PATO:0000088 +name: obsolete absolute disease sensitivity +is_obsolete: true + +[Term] +id: PATO:0000089 +name: obsolete relative disease sensitivity +is_obsolete: true + +[Term] +id: PATO:0000090 +name: obsolete relative sensitivity +is_obsolete: true + +[Term] +id: PATO:0000091 +name: obsolete stress sensitivity +is_obsolete: true + +[Term] +id: PATO:0000092 +name: obsolete abiotic stress sensitivity +is_obsolete: true + +[Term] +id: PATO:0000093 +name: obsolete chemical sensitivity +is_obsolete: true + +[Term] +id: PATO:0000094 +name: obsolete drug sensitivity +is_obsolete: true + +[Term] +id: PATO:0000095 +name: obsolete absolute drug sensitivity +is_obsolete: true + +[Term] +id: PATO:0000096 +name: obsolete relative drug sensitivity +is_obsolete: true + +[Term] +id: PATO:0000097 +name: obsolete herbicide sensitivity +is_obsolete: true + +[Term] +id: PATO:0000098 +name: obsolete insecticide sensitivity +is_obsolete: true + +[Term] +id: PATO:0000099 +name: obsolete plant growth hormone sensitivity +is_obsolete: true + +[Term] +id: PATO:0000100 +name: obsolete soil composition sensitivity +is_obsolete: true + +[Term] +id: PATO:0000101 +name: obsolete soil nutrient sensitivity +is_obsolete: true + +[Term] +id: PATO:0000102 +name: obsolete macronutrient sensitivity +is_obsolete: true + +[Term] +id: PATO:0000103 +name: obsolete micronutrient sensitivity +is_obsolete: true + +[Term] +id: PATO:0000104 +name: obsolete osmotic response sensitivity +is_obsolete: true + +[Term] +id: PATO:0000105 +name: obsolete p h sensitivity +is_obsolete: true + +[Term] +id: PATO:0000106 +name: obsolete acid sensitivity +is_obsolete: true + +[Term] +id: PATO:0000107 +name: obsolete alkali sensitivity +is_obsolete: true + +[Term] +id: PATO:0000108 +name: obsolete salt sensitivity +is_obsolete: true + +[Term] +id: PATO:0000109 +name: obsolete water sensitivity +is_obsolete: true + +[Term] +id: PATO:0000110 +name: obsolete drought sensitivity +is_obsolete: true + +[Term] +id: PATO:0000111 +name: obsolete flooding sensitivity +is_obsolete: true + +[Term] +id: PATO:0000112 +name: obsolete humidity sensitivity +is_obsolete: true + +[Term] +id: PATO:0000113 +name: obsolete radiation sensitivity +is_obsolete: true + +[Term] +id: PATO:0000114 +name: obsolete temperature sensitivity +is_obsolete: true + +[Term] +id: PATO:0000115 +name: obsolete absolute temperature sensitivity +is_obsolete: true + +[Term] +id: PATO:0000116 +name: obsolete relative temperature sensitivity +is_obsolete: true + +[Term] +id: PATO:0000117 +name: size +def: "A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000118 +name: obsolete absolute size +is_obsolete: true + +[Term] +id: PATO:0000119 +name: height +def: "A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0000120 +name: obsolete absolute height +is_obsolete: true + +[Term] +id: PATO:0000121 +name: obsolete relative height +is_obsolete: true + +[Term] +id: PATO:0000122 +name: length +def: "A 1-D extent quality which is equal to the distance between two points." [PATOC:GVG] +subset: attribute_slim +subset: mpath_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0000123 +name: obsolete absolute length +is_obsolete: true + +[Term] +id: PATO:0000124 +name: obsolete relative length +is_obsolete: true + +[Term] +id: PATO:0000125 +name: mass +def: "A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000126 +name: obsolete absolute mass +is_obsolete: true + +[Term] +id: PATO:0000127 +name: obsolete relative mass +is_obsolete: true + +[Term] +id: PATO:0000128 +name: weight +def: "A physical quality inhering in a bearer that has mass near a gravitational body." [Wikipedia:http\://en.wikipedia.org/wiki/Weight] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001035 ! force + +[Term] +id: PATO:0000129 +name: obsolete absolute weight +is_obsolete: true + +[Term] +id: PATO:0000130 +name: obsolete relative weight +is_obsolete: true + +[Term] +id: PATO:0000131 +name: obsolete relative size +is_obsolete: true + +[Term] +id: PATO:0000133 +name: orientation +alt_id: PATO:0000137 +def: "A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object." [PATOC:JE] +subset: attribute_slim +subset: relational_slim +synonym: "amount of rotation" RELATED [] +synonym: "angle" RELATED [] +synonym: "angular magnitude" RELATED [] +synonym: "angular placement" EXACT [] +synonym: "plane angle" RELATED [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000134 +name: obsolete absolute_angle +is_obsolete: true + +[Term] +id: PATO:0000135 +name: obsolete relative_angle +is_obsolete: true + +[Term] +id: PATO:0000136 +name: closure +def: "A morphological quality pertaining to the degree to which an object contains an opening, aperture, orifice or vent." [PATOC:CJM, PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000138 +name: obsolete absolute orientation +is_obsolete: true + +[Term] +id: PATO:0000139 +name: obsolete relative orientation +is_obsolete: true + +[Term] +id: PATO:0000140 +name: position +alt_id: PATO:0001032 +alt_id: PATO:0001631 +def: "A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity." [PATOC:GVG] +subset: attribute_slim +synonym: "location" EXACT [] +synonym: "placement" EXACT [] +synonym: "relational spatial quality" EXACT [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000141 +name: structure +alt_id: PATO:0001452 +def: "A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form." [PATOC:GVG] +subset: attribute_slim +synonym: "conformation" BROAD [VT:1000738] +synonym: "relational structural quality" EXACT [] +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000142 +name: obsolete substance +is_obsolete: true + +[Term] +id: PATO:0000143 +name: obsolete addictive substance +is_obsolete: true + +[Term] +id: PATO:0000144 +name: obsolete solid substance +comment: This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a solid; 'PATO:0001546' +is_obsolete: true + +[Term] +id: PATO:0000145 +name: obsolete liquid substance +comment: This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a liquid; PATO:0001548 ' +is_obsolete: true + +[Term] +id: PATO:0000146 +name: temperature +def: "A physical quality of the thermal energy of a system." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000147 +name: obsolete absolute temperature +is_obsolete: true + +[Term] +id: PATO:0000148 +name: obsolete body temperature +is_obsolete: true + +[Term] +id: PATO:0000149 +name: obsolete relative temperature +is_obsolete: true + +[Term] +id: PATO:0000150 +name: texture +def: "A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000151 +name: obsolete relative texture +is_obsolete: true + +[Term] +id: PATO:0000152 +name: threshold +def: "A quality inhering in a bearer by virtue of the bearer's sensitivity towards a fixed location or value where a change is observed; upper limit." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0000085 ! sensitivity toward + +[Term] +id: PATO:0000153 +name: obsolete absolute threshold +is_obsolete: true + +[Term] +id: PATO:0000154 +name: obsolete pain threshold +is_obsolete: true + +[Term] +id: PATO:0000155 +name: obsolete relative threshold +is_obsolete: true + +[Term] +id: PATO:0000157 +name: obsolete absolute temporal +is_obsolete: true + +[Term] +id: PATO:0000159 +name: obsolete absolute incidence +is_obsolete: true + +[Term] +id: PATO:0000160 +name: obsolete relative incidence +is_obsolete: true + +[Term] +id: PATO:0000161 +name: rate +def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time." [PATOC:melissa] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002062 ! physical quality of a process + +[Term] +id: PATO:0000162 +name: obsolete absolute rate +is_obsolete: true + +[Term] +id: PATO:0000163 +name: obsolete relative rate +is_obsolete: true + +[Term] +id: PATO:0000164 +name: obsolete relative temporal +is_obsolete: true + +[Term] +id: PATO:0000165 +name: time +def: "A quality in which events occur in sequence." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000166 +name: obsolete absolute time +is_obsolete: true + +[Term] +id: PATO:0000167 +name: obsolete bouts +def: "A limited, often assigned period of activity." [answers.com:answers.com] +subset: attribute_slim +is_obsolete: true + +[Term] +id: PATO:0000168 +name: obsolete relative time +is_obsolete: true + +[Term] +id: PATO:0000169 +name: viability +def: "An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000170 +name: obsolete yield +is_obsolete: true + +[Term] +id: PATO:0000171 +name: obsolete absolute yield +is_obsolete: true + +[Term] +id: PATO:0000172 +name: obsolete relative yield +is_obsolete: true + +[Term] +id: PATO:0000173 +name: obsolete function +is_obsolete: true + +[Term] +id: PATO:0000174 +name: obsolete autonomic function +is_obsolete: true + +[Term] +id: PATO:0000175 +name: obsolete behavioral function +is_obsolete: true + +[Term] +id: PATO:0000176 +name: obsolete metabolic function +is_obsolete: true + +[Term] +id: PATO:0000177 +name: obsolete physiological function +is_obsolete: true + +[Term] +id: PATO:0000178 +name: obsolete relative function +is_obsolete: true + +[Term] +id: PATO:0000179 +name: obsolete body position +is_obsolete: true + +[Term] +id: PATO:0000180 +name: obsolete body tone +is_obsolete: true + +[Term] +id: PATO:0000181 +name: obsolete piloerection +is_obsolete: true + +[Term] +id: PATO:0000182 +name: obsolete abdominal tone +is_obsolete: true + +[Term] +id: PATO:0000183 +name: obsolete limb tone +is_obsolete: true + +[Term] +id: PATO:0000184 +name: obsolete arousal +is_obsolete: true + +[Term] +id: PATO:0000185 +name: balance +def: "A behavioral quality inhering in a bearer by virtue of having physical steadiness." [thefreedictionary:thefreedictionary] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0000186 +name: behavioral quality +alt_id: PATO:0001722 +def: "An organismal quality inhering in a bearer by virtue of the bearer's behavior aggregate of the responses or reactions or movements in a given situation." [PATOC:GVG] +synonym: "behavioural quality" EXACT [] +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000187 +name: obsolete consumption quality +def: "A relational quality of occurrent inhering in a bearer by virtue of the bearer's ability to consume a resource." [PATOC:GVG] +comment: Use GO:0007631 +subset: attribute_slim +subset: relational_slim +synonym: "propensity to consume" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000188 +name: coordination +def: "A behavioral quality inhering in a bearer by virtue of the bearer's having or lacking skillful and effective interaction of movement." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0000189 +name: discrimination +def: "A behavioral quality inhering in a bearer by virtue of whether the bearer's disposition to perceive differences between two or more stimuli." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0000190 +name: obsolete gait +is_obsolete: true + +[Term] +id: PATO:0000191 +name: obsolete learning_and memory +is_obsolete: true + +[Term] +id: PATO:0000192 +name: obsolete locomotor_activity +is_obsolete: true + +[Term] +id: PATO:0000193 +name: obsolete mating +is_obsolete: true + +[Term] +id: PATO:0000194 +name: obsolete spontaneous_activity +is_obsolete: true + +[Term] +id: PATO:0000195 +name: obsolete startle response +is_obsolete: true + +[Term] +id: PATO:0000196 +name: obsolete vocalization +is_obsolete: true + +[Term] +id: PATO:0000197 +name: obsolete transfer_arousal +is_obsolete: true + +[Term] +id: PATO:0000198 +name: obsolete absolute consumption +is_obsolete: true + +[Term] +id: PATO:0000199 +name: obsolete relative consumption +is_obsolete: true + +[Term] +id: PATO:0000200 +name: obsolete learning +is_obsolete: true + +[Term] +id: PATO:0000201 +name: obsolete memory +is_obsolete: true + +[Term] +id: PATO:0000202 +name: obsolete long term memory +is_obsolete: true + +[Term] +id: PATO:0000203 +name: obsolete short term memory +is_obsolete: true + +[Term] +id: PATO:0000204 +name: obsolete absolute locomotor_activity +is_obsolete: true + +[Term] +id: PATO:0000205 +name: obsolete relative locomotor_activity +is_obsolete: true + +[Term] +id: PATO:0000206 +name: obsolete enzyme function +is_obsolete: true + +[Term] +id: PATO:0000207 +name: obsolete circulatory function +is_obsolete: true + +[Term] +id: PATO:0000208 +name: obsolete defensive function +is_obsolete: true + +[Term] +id: PATO:0000209 +name: obsolete digestive function +is_obsolete: true + +[Term] +id: PATO:0000210 +name: obsolete excretory function +is_obsolete: true + +[Term] +id: PATO:0000211 +name: obsolete muscle function +is_obsolete: true + +[Term] +id: PATO:0000212 +name: obsolete neural function +is_obsolete: true + +[Term] +id: PATO:0000213 +name: obsolete neurobehavioral function +is_obsolete: true + +[Term] +id: PATO:0000214 +name: obsolete reproductive function +is_obsolete: true + +[Term] +id: PATO:0000215 +name: obsolete respiratory function +is_obsolete: true + +[Term] +id: PATO:0000216 +name: obsolete heart rate +is_obsolete: true + +[Term] +id: PATO:0000217 +name: obsolete immune function +is_obsolete: true + +[Term] +id: PATO:0000218 +name: obsolete repair function +is_obsolete: true + +[Term] +id: PATO:0000219 +name: obsolete healing +is_obsolete: true + +[Term] +id: PATO:0000220 +name: obsolete regeneration +is_obsolete: true + +[Term] +id: PATO:0000221 +name: obsolete urination +is_obsolete: true + +[Term] +id: PATO:0000222 +name: obsolete muscle elevation +is_obsolete: true + +[Term] +id: PATO:0000223 +name: obsolete muscle strength +is_obsolete: true + +[Term] +id: PATO:0000224 +name: obsolete motor function +is_obsolete: true + +[Term] +id: PATO:0000225 +name: obsolete sensory function +is_obsolete: true + +[Term] +id: PATO:0000226 +name: obsolete tactile response +is_obsolete: true + +[Term] +id: PATO:0000227 +name: obsolete motor performance +is_obsolete: true + +[Term] +id: PATO:0000228 +name: obsolete auditory +is_obsolete: true + +[Term] +id: PATO:0000229 +name: obsolete olfactory +is_obsolete: true + +[Term] +id: PATO:0000230 +name: obsolete proprioreception +is_obsolete: true + +[Term] +id: PATO:0000231 +name: obsolete reflex +is_obsolete: true + +[Term] +id: PATO:0000232 +name: obsolete taste +is_obsolete: true + +[Term] +id: PATO:0000233 +name: obsolete touch +is_obsolete: true + +[Term] +id: PATO:0000234 +name: obsolete visual +is_obsolete: true + +[Term] +id: PATO:0000235 +name: obsolete odor_acuity +is_obsolete: true + +[Term] +id: PATO:0000236 +name: obsolete odor type +is_obsolete: true + +[Term] +id: PATO:0000237 +name: obsolete absolute odor_acuity +is_obsolete: true + +[Term] +id: PATO:0000238 +name: obsolete relative odor_acuity +is_obsolete: true + +[Term] +id: PATO:0000239 +name: obsolete blinking reflex +is_obsolete: true + +[Term] +id: PATO:0000240 +name: obsolete contact righting reflex +is_obsolete: true + +[Term] +id: PATO:0000241 +name: obsolete corneal reflex +is_obsolete: true + +[Term] +id: PATO:0000242 +name: obsolete flinch reflex +is_obsolete: true + +[Term] +id: PATO:0000243 +name: obsolete lordosis reflex +is_obsolete: true + +[Term] +id: PATO:0000244 +name: obsolete ocular reflex +is_obsolete: true + +[Term] +id: PATO:0000245 +name: obsolete pinna reflex +is_obsolete: true + +[Term] +id: PATO:0000246 +name: obsolete postural reflex +is_obsolete: true + +[Term] +id: PATO:0000247 +name: obsolete proboscis extension reflex +is_obsolete: true + +[Term] +id: PATO:0000248 +name: obsolete pupillary reflex +is_obsolete: true + +[Term] +id: PATO:0000249 +name: obsolete righting reflex +is_obsolete: true + +[Term] +id: PATO:0000250 +name: obsolete spinal reflex +is_obsolete: true + +[Term] +id: PATO:0000251 +name: obsolete startle reflex +is_obsolete: true + +[Term] +id: PATO:0000252 +name: obsolete suckling reflex +is_obsolete: true + +[Term] +id: PATO:0000253 +name: obsolete swallowing reflex +is_obsolete: true + +[Term] +id: PATO:0000254 +name: obsolete vibrissae reflex +is_obsolete: true + +[Term] +id: PATO:0000255 +name: obsolete taste_acuity +is_obsolete: true + +[Term] +id: PATO:0000256 +name: obsolete taste type +is_obsolete: true + +[Term] +id: PATO:0000257 +name: obsolete absolute taste_acuity +is_obsolete: true + +[Term] +id: PATO:0000258 +name: obsolete relative taste_acuity +is_obsolete: true + +[Term] +id: PATO:0000259 +name: obsolete visual_ability +is_obsolete: true + +[Term] +id: PATO:0000260 +name: obsolete visual_acuity +is_obsolete: true + +[Term] +id: PATO:0000261 +name: maturity +def: "A quality of a single physical entity which is held by a bearer when the latter exhibits a state of growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] +subset: attribute_slim +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000262 +name: obsolete visual placing +is_obsolete: true + +[Term] +id: PATO:0000263 +name: obsolete visual threshold +is_obsolete: true + +[Term] +id: PATO:0000264 +name: obsolete absolute visual_ability +is_obsolete: true + +[Term] +id: PATO:0000265 +name: obsolete relative visual_ability +is_obsolete: true + +[Term] +id: PATO:0000266 +name: obsolete absolute visual_acuity +is_obsolete: true + +[Term] +id: PATO:0000267 +name: obsolete relative visual_acuity +is_obsolete: true + +[Term] +id: PATO:0000268 +name: obsolete absolute visual threshold +is_obsolete: true + +[Term] +id: PATO:0000269 +name: obsolete relative visual threshold +is_obsolete: true + +[Term] +id: PATO:0000270 +name: obsolete defecation +is_obsolete: true + +[Term] +id: PATO:0000271 +name: obsolete prepulse inhibition +is_obsolete: true + +[Term] +id: PATO:0000272 +name: obsolete relative neurobehavioral function +is_obsolete: true + +[Term] +id: PATO:0000273 +name: fecundity +def: "A reproductive quality inhering in an organism or population by virtue of the bearer's potential reproductive capacity ad measured by the number of gametes." [Wikipedia:http\://en.wikipedia.org/wiki/Fecundity] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001434 ! reproductive quality + +[Term] +id: PATO:0000274 +name: fertility +def: "A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001434 ! reproductive quality + +[Term] +id: PATO:0000275 +name: obsolete gestational period +is_obsolete: true + +[Term] +id: PATO:0000276 +name: brood size +def: "A reproductive quality inhering in the young of an animal by virtue of their number." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +synonym: "litter size" RELATED [] +is_a: PATO:0001496 ! brood quality + +[Term] +id: PATO:0000277 +name: female fertility +def: "A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000274 ! fertility + +[Term] +id: PATO:0000278 +name: obsolete hybrid fertility +is_obsolete: true + +[Term] +id: PATO:0000279 +name: male fertility +def: "A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000274 ! fertility + +[Term] +id: PATO:0000280 +name: obsolete backcross fertility +is_obsolete: true + +[Term] +id: PATO:0000281 +name: obsolete cytoplasmic sterility +is_obsolete: true + +[Term] +id: PATO:0000282 +name: obsolete f1 fertility +is_obsolete: true + +[Term] +id: PATO:0000283 +name: obsolete f2 fertility +is_obsolete: true + +[Term] +id: PATO:0000284 +name: obsolete germ line dependent fertility +is_obsolete: true + +[Term] +id: PATO:0000285 +name: obsolete soma dependent fertility +is_obsolete: true + +[Term] +id: PATO:0000286 +name: obsolete cytoplasmic male sterility +is_obsolete: true + +[Term] +id: PATO:0000287 +name: obsolete absolute litter size +is_obsolete: true + +[Term] +id: PATO:0000288 +name: obsolete relative litter size +is_obsolete: true + +[Term] +id: PATO:0000289 +name: obsolete respiratory rate +is_obsolete: true + +[Term] +id: PATO:0000290 +name: obsolete absolute respiratory rate +is_obsolete: true + +[Term] +id: PATO:0000291 +name: obsolete relative respiratory rate +is_obsolete: true + +[Term] +id: PATO:0000292 +name: obsolete mobility value +is_obsolete: true + +[Term] +id: PATO:0000293 +name: obsolete absolute activity value +is_obsolete: true + +[Term] +id: PATO:0000294 +name: obsolete process value +is_obsolete: true + +[Term] +id: PATO:0000295 +name: obsolete relative activity value +is_obsolete: true + +[Term] +id: PATO:0000296 +name: obsolete speed value +is_obsolete: true + +[Term] +id: PATO:0000297 +name: arrested +alt_id: PATO:0001508 +def: "A quality of a process which ends earlier than the natural end time or reference process." [PATOC:LC] +comment: TODO: the definition is incorrect. See absent. +subset: value_slim +synonym: "abolished" EXACT [] +synonym: "incomplete" RELATED [] +is_a: PATO:0002052 ! decreased occurrence +is_a: PATO:0002324 ! offset quality + +[Term] +id: PATO:0000298 +name: obsolete not arrested value +is_obsolete: true + +[Term] +id: PATO:0000299 +name: mobile +def: "A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000004 ! mobility +disjoint_from: PATO:0000300 ! immobile +property_value: RO:0002604 PATO:0000300 + +[Term] +id: PATO:0000300 +name: immobile +def: "A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "fixed" RELATED [] +is_a: PATO:0000004 ! mobility +property_value: RO:0002604 PATO:0000299 + +[Term] +id: PATO:0000301 +name: obsolete absolute speed value +is_obsolete: true + +[Term] +id: PATO:0000302 +name: obsolete relative speed value +is_obsolete: true + +[Term] +id: PATO:0000303 +name: increased speed +def: "A speed which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "fast speed" RELATED [] +synonym: "high speed" EXACT [] +is_a: PATO:0000008 ! speed +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0000304 + +[Term] +id: PATO:0000304 +name: decreased speed +def: "A speed which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "slow" EXACT [] +synonym: "slow speed" EXACT [] +is_a: PATO:0000008 ! speed +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0000303 + +[Term] +id: PATO:0000305 +name: obsolete age value +is_obsolete: true + +[Term] +id: PATO:0000306 +name: obsolete absolute age value +is_obsolete: true + +[Term] +id: PATO:0000307 +name: obsolete relative age value +is_obsolete: true + +[Term] +id: PATO:0000308 +name: old +def: "An age which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000011 ! age +property_value: RO:0002604 PATO:0000309 + +[Term] +id: PATO:0000309 +name: young +def: "An age which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000011 ! age +property_value: RO:0002604 PATO:0000308 + +[Term] +id: PATO:0000310 +name: obsolete color value +is_obsolete: true + +[Term] +id: PATO:0000311 +name: obsolete color hue value +is_obsolete: true + +[Term] +id: PATO:0000312 +name: obsolete color intensity value +is_obsolete: true + +[Term] +id: PATO:0000313 +name: obsolete color saturation value +is_obsolete: true + +[Term] +id: PATO:0000314 +name: obsolete flourescence value +is_obsolete: true + +[Term] +id: PATO:0000315 +name: obsolete color pattern value +is_obsolete: true + +[Term] +id: PATO:0000316 +name: obsolete relative color value +is_obsolete: true + +[Term] +id: PATO:0000317 +name: black +def: "A color that lacks any hues as parts." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000318 +name: blue +def: "A color hue with low wavelength of that portion of the visible spectrum lying between green and indigo, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 490 nanometers." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000319 +name: cyan +def: "A color consisting of green and blue hue." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000320 +name: green +def: "A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000321 +name: magenta +def: "A color consisting of red and blue hues." [Wikipedia:http\://en.wikipedia.org/wiki/Magenta] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000322 +name: red +def: "A color hue with high wavelength of the long-wave end of the visible spectrum, evoked in the human observer by radiant energy with wavelengths of approximately 630 to 750 nanometers." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000323 +name: white +def: "An achromatic color of maximum brightness; the color of objects that reflect nearly all light of all visible wavelengths." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +synonym: "whitish" RELATED [] +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000324 +name: yellow +def: "A color hue with medium wavelength of that portion of the visible spectrum lying between orange and green, evoked in the human observer by radiant energy with wavelengths of approximately 570 to 590 nanometers." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000325 +name: obsolete bright +is_obsolete: true + +[Term] +id: PATO:0000326 +name: obsolete dim +is_obsolete: true + +[Term] +id: PATO:0000327 +name: low brightness +def: "A color brightness which is relatively low." [PATOC:MAH] +subset: value_slim +synonym: "dark" EXACT [] +is_a: PATO:0000016 ! color brightness +property_value: RO:0002604 PATO:0000665 + +[Term] +id: PATO:0000328 +name: low saturation +def: "A color saturation which is of low purity." [PATOC:MAH] +subset: value_slim +synonym: "dull" RELATED [] +synonym: "pale" EXACT [] +is_a: PATO:0000017 ! color saturation +property_value: RO:0002604 PATO:0001229 + +[Term] +id: PATO:0000329 +name: blotchy +def: "A color pattern inhering in a bearer by virtue of bearer's being marked with irregularly shaped spots or blots of a different hue or degree of saturation." [Dictionary.com:Dictionary.com] +subset: value_slim +synonym: "blotched" EXACT [] +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0000330 +name: irregular spatial pattern +def: "A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +property_value: RO:0002604 PATO:0000440 + +[Term] +id: PATO:0000331 +name: discolored +def: "A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color." [Dictionary.com:Dictionary.com] +subset: value_slim +is_a: PATO:0000019 ! color pattern +property_value: RO:0002604 PATO:0000336 + +[Term] +id: PATO:0000333 +name: spotted +def: "A color pattern inhering in a bearer by virtue of bearer's being marked with a round area of different hue or degree of saturation." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0000335 +name: obsolete variegated +synonym: "mottled (sensu Drosophila)" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000336 +name: colored +alt_id: PATO:0000332 +def: "A color quality inhering in a bearer by virtue of the bearer's having color." [PATOC:GVG] +subset: value_slim +synonym: "pigmented" RELATED [] +is_a: PATO:0000014 ! color +property_value: RO:0002604 PATO:0000331 + +[Term] +id: PATO:0000337 +name: colorless +alt_id: PATO:0000334 +def: "A color quality inhering in a bearer by virtue of the bearer's lacking color." [PATOC:GVG] +subset: value_slim +synonym: "unpigmented" RELATED [] +is_a: PATO:0000019 ! color pattern + +[Term] +id: PATO:0000338 +name: obsolete compatability value +is_obsolete: true + +[Term] +id: PATO:0000339 +name: obsolete gametophytic compatability value +is_obsolete: true + +[Term] +id: PATO:0000340 +name: obsolete relative compatability value +is_obsolete: true + +[Term] +id: PATO:0000341 +name: obsolete sporophytic compatability value +is_obsolete: true + +[Term] +id: PATO:0000342 +name: obsolete gametophyte compatible value +is_obsolete: true + +[Term] +id: PATO:0000343 +name: obsolete gametophyte incompatible value +is_obsolete: true + +[Term] +id: PATO:0000344 +name: compatible +def: "A compatibility quality inhering in a bearer by virtue of the bearer's being capable of harmonious coexistence." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000021 ! compatibility +disjoint_from: PATO:0000345 ! incompatible +property_value: RO:0002604 PATO:0000345 + +[Term] +id: PATO:0000345 +name: incompatible +def: "A compatibility quality inhering in a bearer by virtue of the bearer's being incapable of harmonious coexistence." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000021 ! compatibility +property_value: RO:0002604 PATO:0000344 + +[Term] +id: PATO:0000346 +name: obsolete sporophyte compatible value +is_obsolete: true + +[Term] +id: PATO:0000347 +name: obsolete sporophyte incompatible value +is_obsolete: true + +[Term] +id: PATO:0000348 +name: obsolete composition value +is_obsolete: true + +[Term] +id: PATO:0000349 +name: obsolete carbohydrate composition value +is_obsolete: true + +[Term] +id: PATO:0000350 +name: obsolete electrolyte composition value +is_obsolete: true + +[Term] +id: PATO:0000351 +name: obsolete macromolecular composition value +is_obsolete: true + +[Term] +id: PATO:0000352 +name: obsolete metabolite composition value +is_obsolete: true + +[Term] +id: PATO:0000353 +name: obsolete secondary product composition value +is_obsolete: true + +[Term] +id: PATO:0000354 +name: obsolete protein composition value +is_obsolete: true + +[Term] +id: PATO:0000355 +name: obsolete enzyme composition value +is_obsolete: true + +[Term] +id: PATO:0000356 +name: obsolete concentration value +is_obsolete: true + +[Term] +id: PATO:0000357 +name: obsolete protein concentration value +is_obsolete: true + +[Term] +id: PATO:0000358 +name: obsolete sugar concentration value +is_obsolete: true + +[Term] +id: PATO:0000359 +name: obsolete water content value +is_obsolete: true + +[Term] +id: PATO:0000360 +name: obsolete consistency value +is_obsolete: true + +[Term] +id: PATO:0000361 +name: obsolete gel consistency value +is_obsolete: true + +[Term] +id: PATO:0000362 +name: obsolete direction value +is_obsolete: true + +[Term] +id: PATO:0000363 +name: obsolete away +is_obsolete: true + +[Term] +id: PATO:0000364 +name: obsolete bi-directional +is_obsolete: true + +[Term] +id: PATO:0000365 +name: down +def: "A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction +property_value: RO:0002604 PATO:0000370 + +[Term] +id: PATO:0000366 +name: left +def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces east." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction + +[Term] +id: PATO:0000367 +name: right +def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces west." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction + +[Term] +id: PATO:0000368 +name: obsolete towards1 +is_obsolete: true + +[Term] +id: PATO:0000369 +name: obsolete unidirectional +is_obsolete: true + +[Term] +id: PATO:0000370 +name: up +def: "A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction +property_value: RO:0002604 PATO:0000365 + +[Term] +id: PATO:0000371 +name: obsolete distance value +is_obsolete: true + +[Term] +id: PATO:0000372 +name: obsolete absolute distance value +is_obsolete: true + +[Term] +id: PATO:0000373 +name: obsolete relative distance value +is_obsolete: true + +[Term] +id: PATO:0000374 +name: increased distance +def: "A distance which is greater relative to the normal or average." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "long distance" RELATED [] +is_a: PATO:0000040 ! distance +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0000375 + +[Term] +id: PATO:0000375 +name: decreased distance +def: "A distance which is lesser relative to the normal or average." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "short distance" RELATED [] +is_a: PATO:0000040 ! distance +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0000374 + +[Term] +id: PATO:0000376 +name: obsolete flavor value +is_obsolete: true + +[Term] +id: PATO:0000377 +name: obsolete frequency value +is_obsolete: true + +[Term] +id: PATO:0000378 +name: obsolete absolute frequency value +is_obsolete: true + +[Term] +id: PATO:0000379 +name: obsolete relative frequency value +is_obsolete: true + +[Term] +id: PATO:0000380 +name: increased frequency +def: "A frequency which is relatively high." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "frequent" RELATED [] +synonym: "high frequency" EXACT [] +is_a: PATO:0000044 ! frequency +is_a: PATO:0000912 ! increased rate +property_value: RO:0002604 PATO:0000381 + +[Term] +id: PATO:0000381 +name: decreased frequency +def: "A frequency which is relatively low." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "infrequent" RELATED [] +synonym: "low frequency" EXACT [] +is_a: PATO:0000044 ! frequency +is_a: PATO:0000911 ! decreased rate +property_value: RO:0002604 PATO:0000380 + +[Term] +id: PATO:0000382 +name: obsolete gender value +is_obsolete: true + +[Term] +id: PATO:0000383 +name: female +def: "A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes." [MGED:MGED] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001894 ! phenotypic sex + +[Term] +id: PATO:0000384 +name: male +def: "A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes." [MGED:MGED] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001894 ! phenotypic sex + +[Term] +id: PATO:0000385 +name: obsolete hardness value +is_obsolete: true + +[Term] +id: PATO:0000386 +name: hard +def: "A hardness quality of being rigid and resistant to pressure." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +synonym: "firm" RELATED [] +synonym: "impenetrable" RELATED [] +synonym: "tough" RELATED [] +is_a: PATO:0000048 ! hardness +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0000387 + +[Term] +id: PATO:0000387 +name: soft +def: "A hardness quality of giving little resistance to pressure." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000048 ! hardness +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0000386 + +[Term] +id: PATO:0000388 +name: obsolete intensity value +is_obsolete: true + +[Term] +id: PATO:0000389 +name: acute +def: "A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course." [dictionary:reference] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001309 ! duration +property_value: RO:0002604 PATO:0001863 + +[Term] +id: PATO:0000390 +name: obsolete extreme +is_obsolete: true + +[Term] +id: PATO:0000391 +name: obsolete intense +is_obsolete: true + +[Term] +id: PATO:0000392 +name: obsolete limited +is_obsolete: true + +[Term] +id: PATO:0000393 +name: obsolete maximal +is_obsolete: true + +[Term] +id: PATO:0000394 +name: mild intensity +def: "An intensity which is less than moderate in type or degree or effect or force." [PATOC:GVG] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000049 ! intensity + +[Term] +id: PATO:0000395 +name: moderate intensity +def: "An intensity which is less than extreme in type or degree or effect or force." [Merriam-Webster:Merriam-Webster] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000049 ! intensity + +[Term] +id: PATO:0000396 +name: severe intensity +def: "An intensity which is extremely bad or unpleasant in type or degree or effect or force." [WordNet:WordNet] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000049 ! intensity + +[Term] +id: PATO:0000397 +name: obsolete slight +subset: mpath_slim +is_obsolete: true + +[Term] +id: PATO:0000398 +name: obsolete vigorous +is_obsolete: true + +[Term] +id: PATO:0000399 +name: obsolete life span value +is_obsolete: true + +[Term] +id: PATO:0000400 +name: obsolete morphology value +is_obsolete: true + +[Term] +id: PATO:0000401 +name: obsolete shape value +is_obsolete: true + +[Term] +id: PATO:0000402 +name: branched +def: "A branchiness quality inhering in a bearer by virtue of the bearer's having branches." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "ramified" EXACT [] +synonym: "ramiform" EXACT [] +is_a: PATO:0002009 ! branchiness +disjoint_from: PATO:0000414 ! unbranched +property_value: RO:0002604 PATO:0000414 + +[Term] +id: PATO:0000403 +name: cleft +def: "A concave quality inhering in a bearer by virtue of the bearer's resembling a groove or fissure." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001857 ! concave + +[Term] +id: PATO:0000404 +name: coiled +alt_id: PATO:0001363 +def: "A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals)." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "helical" RELATED [] +synonym: "helicoid" RELATED [] +synonym: "helicoidal" RELATED [] +synonym: "helix-shaped" RELATED [] +synonym: "spiral" EXACT [] +is_a: PATO:0001794 ! coiling +property_value: RO:0002604 PATO:0000415 + +[Term] +id: PATO:0000405 +name: curled +def: "A shape quality inhering in a bearer by virtue of the bearer's having parallel chains in undulate fashion on the border." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000406 +name: curved +def: "A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +synonym: "bowing" NARROW [] +synonym: "curled" RELATED [] +is_a: PATO:0001591 ! curvature + +[Term] +id: PATO:0000407 +name: flat +def: "A quality inhering in a bearer by virtue of the bearer's having a horizontal surface without a slope, tilt, or curvature." [web:http\://www.merriam-webster.com/] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "plate-like" RELATED [] +is_a: PATO:0002254 ! flattened + +[Term] +id: PATO:0000409 +name: oblate +def: "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting an equatorial diameter greater than its polar diameter." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "oblate spheroid" EXACT [] +is_a: PATO:0001865 ! spheroid + +[Term] +id: PATO:0000410 +name: pinnate +def: "A shape quality inhering in a bearer by virtue of the bearer's having leaflets or leaflets-like structures on each side of a common axis." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "feather-like" RELATED [] +synonym: "of a leaf shape" RELATED [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000411 +name: circular +def: "A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center." [thefreedictionary.com:thefreedictionary.com] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "round" RELATED [] +synonym: "rounded" RELATED [] +is_a: PATO:0000947 ! elliptic + +[Term] +id: PATO:0000413 +name: square +def: "A shape quality inhering in a bearer by virtue of the bearer's having an equal-sided rectangular form." [answers.com:answers.com] +subset: cell_quality +subset: value_slim +is_a: PATO:0002317 ! parallelogram + +[Term] +id: PATO:0000414 +name: unbranched +def: "A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0002009 ! branchiness +property_value: RO:0002604 PATO:0000402 + +[Term] +id: PATO:0000415 +name: uncoiled +def: "A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals)." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001794 ! coiling +property_value: RO:0002604 PATO:0000404 + +[Term] +id: PATO:0000416 +name: obsolete count value +is_obsolete: true + +[Term] +id: PATO:0000417 +name: obsolete absolute number value +is_obsolete: true + +[Term] +id: PATO:0000418 +name: obsolete relative number value +is_obsolete: true + +[Term] +id: PATO:0000421 +name: obsolete nutritional value +is_obsolete: true + +[Term] +id: PATO:0000422 +name: auxotrophic +def: "A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth." [Wikipedia:http\://en.wikipedia.org/wiki/Auxotrophic] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000056 ! trophic quality +property_value: RO:0002604 PATO:0000423 + +[Term] +id: PATO:0000423 +name: prototrophic +def: "A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth." [Wikipedia:http\://en.wikipedia.org/wiki/Prototrophic] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000056 ! trophic quality +property_value: RO:0002604 PATO:0000422 + +[Term] +id: PATO:0000424 +name: obsolete occurence value +is_obsolete: true + +[Term] +id: PATO:0000425 +name: obsolete continual +subset: mpath_slim +is_obsolete: true + +[Term] +id: PATO:0000427 +name: recurrent +def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly." [thefreedictionary.com:thefreedictionary.com] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000057 ! occurrence +property_value: RO:0002604 PATO:0000428 + +[Term] +id: PATO:0000428 +name: sporadic +def: "A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances." [PATO:MAH, WordNet:WordNet] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000057 ! occurrence +property_value: RO:0002604 PATO:0000427 + +[Term] +id: PATO:0000430 +name: obsolete unique +is_obsolete: true + +[Term] +id: PATO:0000431 +name: obsolete odor value +is_obsolete: true + +[Term] +id: PATO:0000432 +name: obsolete parental type value +is_obsolete: true + +[Term] +id: PATO:0000433 +name: obsolete paternal +def: "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a father." [WordNet:WordNet] +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0000434 +name: obsolete maternal +def: "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a mother." [WordNet:WordNet] +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0000435 +name: obsolete pattern value +is_obsolete: true + +[Term] +id: PATO:0000436 +name: obsolete concrete +is_obsolete: true + +[Term] +id: PATO:0000437 +name: obsolete sleep pattern value +is_obsolete: true + +[Term] +id: PATO:0000438 +name: invariant +def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation." [Dictionary:http\://dictionary.reference.com/] +subset: value_slim +synonym: "constant" RELATED [] +synonym: "uniform" EXACT [] +is_a: PATO:0001303 ! variability +property_value: RO:0002604 PATO:0001227 + +[Term] +id: PATO:0000439 +name: obsolete perseverative +is_obsolete: true + +[Term] +id: PATO:0000440 +name: regular spatial pattern +def: "A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +property_value: RO:0002604 PATO:0000330 + +[Term] +id: PATO:0000441 +name: repetitive +def: "A quality of a single process inhering in a bearer by virtue of the bearer's marked by tedious repetition." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000057 ! occurrence + +[Term] +id: PATO:0000442 +name: obsolete insomnia +def: "A sleep pattern quality inhering in a bearer by virtue of the bearer's inability to sleep." [WordNet:WordNet] +comment: Consider NBO:0000422. +subset: disposition_slim +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0000443 +name: obsolete narcolepsy +def: "A sleep pattern quality inhering in a bearer by virtue of the bearer's disrupted sleep during normal sleeping period; often accompanied by cataplexy, sleep paralysis." [] +comment: Consider NBO:0000423 +subset: disposition_slim +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0000444 +name: obsolete percentage value +is_obsolete: true + +[Term] +id: PATO:0000445 +name: obsolete relative percentage value +is_obsolete: true + +[Term] +id: PATO:0000446 +name: obsolete absolute percentage value +is_obsolete: true + +[Term] +id: PATO:0000447 +name: obsolete decreased percentage +is_obsolete: true + +[Term] +id: PATO:0000448 +name: obsolete high percentage +is_obsolete: true + +[Term] +id: PATO:0000449 +name: obsolete increased percentage +is_obsolete: true + +[Term] +id: PATO:0000450 +name: obsolete low percentage +is_obsolete: true + +[Term] +id: PATO:0000451 +name: obsolete pilosity value +is_obsolete: true + +[Term] +id: PATO:0000452 +name: obsolete relative pilosity value +is_obsolete: true + +[Term] +id: PATO:0000453 +name: glabrous +def: "A pilosity quality inhering in a bearer by virtue of the bearer's lack of hairs or bristles." [PATOC:CJM, PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "hairless" RELATED [] +is_a: PATO:0000066 ! pilosity +disjoint_from: PATO:0000454 ! hairy + +[Term] +id: PATO:0000454 +name: hairy +def: "A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000066 ! pilosity + +[Term] +id: PATO:0000455 +name: pubescent +def: "A maturity quality inhering in a bearer by virtue of the bearer's having arrived at the onset of puberty (the age at which sex glands become functional) but not yet fully mature." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0000456 +name: obsolete abstract +is_obsolete: true + +[Term] +id: PATO:0000457 +name: obsolete deviation(from_normal) value +is_obsolete: true + +[Term] +id: PATO:0000458 +name: obsolete presence value +is_obsolete: true + +[Term] +id: PATO:0000459 +name: obsolete relative quantity value +is_obsolete: true + +[Term] +id: PATO:0000460 +name: abnormal +def: "A quality inhering in a bearer by virtue of the bearer's deviation from normal or average." [PATOC:GVG] +subset: abnormal_slim +subset: mpath_slim +subset: value_slim +synonym: "aberrant" RELATED [] +synonym: "atypia" RELATED [] +synonym: "atypical" RELATED [] +synonym: "defective" RELATED [] +is_a: PATO:0000069 ! deviation(from_normal) +property_value: RO:0002604 PATO:0000461 + +[Term] +id: PATO:0000461 +name: normal +def: "A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average." [PATOC:GVG] +subset: abnormal_slim +subset: mpath_slim +subset: value_slim +synonym: "average" RELATED [] +is_a: PATO:0000068 ! qualitative +property_value: RO:0002604 PATO:0000460 + +[Term] +id: PATO:0000462 +name: absent +alt_id: PATO:0001996 +def: "A quality denoting the lack of an entity." [thefreedictionary.:thefreedictionary.] +comment: See documentation here: http://code.google.com/p/phenotype-ontologies/wiki/ModelingOfAbsence +subset: absent_slim +subset: mpath_slim +subset: value_slim +synonym: "absence" EXACT [] +synonym: "absent from organism" EXACT [] +is_a: PATO:0000070 ! amount +disjoint_from: PATO:0000467 ! present +relationship: reciprocal_of PATO:0001558 ! lacking processual parts +relationship: reciprocal_of PATO:0002000 ! lacks all parts of type +property_value: RO:0002604 PATO:0000467 + +[Term] +id: PATO:0000463 +name: conspicuous +def: "A quality inhering in a bearer by virtue of being clearly visible." [thefreedictionary:thefreedictionary] +subset: mpath_slim +subset: value_slim +synonym: "distinct" RELATED [] +is_a: PATO:0001998 ! conspicuousness +property_value: RO:0002604 PATO:0000464 + +[Term] +id: PATO:0000464 +name: inconspicuous +def: "A quality inhering in a bearer by virtue of not being clearly visible." [thefreedictionary:thefreedictionary] +subset: mpath_slim +subset: value_slim +synonym: "faint" RELATED [] +is_a: PATO:0001998 ! conspicuousness +property_value: RO:0002604 PATO:0000463 + +[Term] +id: PATO:0000465 +name: obsolete marked +is_obsolete: true + +[Term] +id: PATO:0000466 +name: obsolete none +is_obsolete: true + +[Term] +id: PATO:0000467 +name: present +def: "A quality inhering in a bearer by virtue of the bearer's existence." [PATOC:GVG] +subset: absent_slim +subset: value_slim +synonym: "present in organism" RELATED [] +is_a: PATO:0000070 ! amount +property_value: RO:0002604 PATO:0000462 + +[Term] +id: PATO:0000469 +name: obsolete high +is_obsolete: true + +[Term] +id: PATO:0000470 +name: increased amount +alt_id: PATO:0000420 +alt_id: PATO:0000650 +def: "An amount which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "accessory" RELATED [] +synonym: "increased" RELATED [] +synonym: "increased number" EXACT [] +synonym: "present in greater numbers in organism" EXACT [] +synonym: "supernumerary" EXACT [] +is_a: PATO:0000467 ! present +is_a: PATO:0002300 ! increased quality +property_value: RO:0002604 PATO:0001997 + +[Term] +id: PATO:0000471 +name: obsolete low +is_obsolete: true + +[Term] +id: PATO:0000472 +name: obsolete quality value +is_obsolete: true + +[Term] +id: PATO:0000473 +name: obsolete relative_quality value +is_obsolete: true + +[Term] +id: PATO:0000474 +name: obsolete shattering value +is_obsolete: true + +[Term] +id: PATO:0000475 +name: obsolete threshability value +is_obsolete: true + +[Term] +id: PATO:0000476 +name: obsolete bad value +is_obsolete: true + +[Term] +id: PATO:0000477 +name: obsolete good value +is_obsolete: true + +[Term] +id: PATO:0000478 +name: obsolete poor value +is_obsolete: true + +[Term] +id: PATO:0000479 +name: obsolete regulation value +is_obsolete: true + +[Term] +id: PATO:0000480 +name: obsolete positive regulation +is_obsolete: true + +[Term] +id: PATO:0000481 +name: obsolete negative regulation +is_obsolete: true + +[Term] +id: PATO:0000482 +name: obsolete response value +is_obsolete: true + +[Term] +id: PATO:0000483 +name: obsolete tactile hyperresponsive +is_obsolete: true + +[Term] +id: PATO:0000484 +name: obsolete tactile hyporesponsive +is_obsolete: true + +[Term] +id: PATO:0000485 +name: obsolete mild response +is_obsolete: true + +[Term] +id: PATO:0000486 +name: obsolete moderate response +is_obsolete: true + +[Term] +id: PATO:0000487 +name: responsive to +def: "A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "responsive" EXACT [] +is_a: PATO:0000077 ! response to +disjoint_from: PATO:0000488 ! unresponsive to +property_value: RO:0002604 PATO:0000488 + +[Term] +id: PATO:0000488 +name: unresponsive to +def: "A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "unresponsive" EXACT [] +is_a: PATO:0000077 ! response to +property_value: RO:0002604 PATO:0000487 + +[Term] +id: PATO:0000489 +name: obsolete vigorous response +is_obsolete: true + +[Term] +id: PATO:0000490 +name: obsolete rhythym value +is_obsolete: true + +[Term] +id: PATO:0000491 +name: obsolete sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000492 +name: obsolete absolute rhythym value +is_obsolete: true + +[Term] +id: PATO:0000493 +name: obsolete amplitude value +is_obsolete: true + +[Term] +id: PATO:0000494 +name: obsolete period value +is_obsolete: true + +[Term] +id: PATO:0000495 +name: obsolete persistence value +is_obsolete: true + +[Term] +id: PATO:0000496 +name: obsolete phase value +is_obsolete: true + +[Term] +id: PATO:0000497 +name: obsolete relative rhythym value +is_obsolete: true + +[Term] +id: PATO:0000498 +name: increased duration +alt_id: PATO:0000715 +def: "A duration quality of a process which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "chronic" RELATED [] +synonym: "high time" EXACT [] +synonym: "increased period" EXACT [] +synonym: "increased time" EXACT [] +synonym: "prolonged period" RELATED [] +synonym: "slow time" RELATED [] +is_a: PATO:0001309 ! duration +is_a: PATO:0002304 ! increased process quality +property_value: RO:0002604 PATO:0000499 + +[Term] +id: PATO:0000499 +name: decreased duration +alt_id: PATO:0000716 +def: "A duration quality of a process which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "decreased period" EXACT [] +synonym: "decreased time" EXACT [] +synonym: "fast time" RELATED [] +synonym: "low period" EXACT [] +synonym: "shortened period" EXACT [] +is_a: PATO:0001309 ! duration +is_a: PATO:0002302 ! decreased process quality +property_value: RO:0002604 PATO:0000498 + +[Term] +id: PATO:0000500 +name: advanced phase +def: "A phase which occurs earlier than the natural start time." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0000501 +name: dark phase +def: "A phase which occurs during dark cycle." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0000502 +name: delayed +def: "A quality of a process which starts later than the natural start time or the reference process." [PATOC:LC] +subset: value_slim +synonym: "late" RELATED [] +is_a: PATO:0002325 ! onset quality + +[Term] +id: PATO:0000503 +name: light phase +def: "A phase which occurs during the light cycle." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0000504 +name: arrhythmic +def: "A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000078 ! rhythm quality +property_value: RO:0002604 PATO:0000505 + +[Term] +id: PATO:0000505 +name: rhythmic +def: "A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000078 ! rhythm quality +property_value: RO:0002604 PATO:0000504 + +[Term] +id: PATO:0000506 +name: obsolete absolute sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000507 +name: obsolete disease sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000508 +name: obsolete relative sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000509 +name: obsolete stress sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000510 +name: obsolete temperature sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000511 +name: obsolete absolute disease sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000512 +name: obsolete relative disease sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000513 +name: insensitive toward +def: "A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "insensitive" EXACT [] +synonym: "resistant" RELATED [] +is_a: PATO:0000085 ! sensitivity toward +property_value: RO:0002604 PATO:0000516 + +[Term] +id: PATO:0000514 +name: obsolete intolerant value +is_obsolete: true + +[Term] +id: PATO:0000515 +name: tolerant to +def: "A resistance quality inhering in a bearer by virtue of its disposition to endure or being insensitive to a stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "tolerant" EXACT [] +is_a: PATO:0001046 ! resistance to +disjoint_from: PATO:0001178 ! resistant to + +[Term] +id: PATO:0000516 +name: sensitive toward +def: "A quality inhering in a bearer by virtue of the bearer's having sensitivity toward an external stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "sensitive" EXACT [] +is_a: PATO:0000085 ! sensitivity toward +property_value: RO:0002604 PATO:0000513 + +[Term] +id: PATO:0000517 +name: obsolete abiotic stress sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000518 +name: obsolete chemical sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000519 +name: obsolete humidity sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000520 +name: obsolete radiation sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000521 +name: obsolete drug sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000522 +name: obsolete herbicide sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000523 +name: obsolete insecticide sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000524 +name: obsolete plant growth hormone sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000525 +name: obsolete soil composition sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000526 +name: obsolete absolute drug sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000527 +name: obsolete relative drug sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000528 +name: obsolete drug insensitive +is_obsolete: true + +[Term] +id: PATO:0000529 +name: obsolete drug sensitive +is_obsolete: true + +[Term] +id: PATO:0000530 +name: obsolete soil nutrient sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000531 +name: obsolete macronutrient sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000532 +name: obsolete micronutrient sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000533 +name: obsolete osmotic response sensitivity +is_obsolete: true + +[Term] +id: PATO:0000534 +name: obsolete p h sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000535 +name: obsolete salt sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000536 +name: obsolete water sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000537 +name: obsolete acid sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000538 +name: obsolete alkali sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000539 +name: obsolete drought sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000540 +name: obsolete flooding sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000541 +name: obsolete photosensitivity value +is_obsolete: true + +[Term] +id: PATO:0000542 +name: obsolete absolute photosensitivity value +is_obsolete: true + +[Term] +id: PATO:0000543 +name: obsolete light intensivity sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000544 +name: obsolete light_quality sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000545 +name: obsolete relative photosensitivity value +is_obsolete: true + +[Term] +id: PATO:0000546 +name: photoinsensitive +def: "A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "photoresistant" RELATED [] +is_a: PATO:0000927 ! photosensitivity +disjoint_from: PATO:0000547 ! photosensitive +property_value: RO:0002604 PATO:0000547 + +[Term] +id: PATO:0000547 +name: photosensitive +def: "A photosensitivity quality inhering in a bearer by virtue of the bearer's exhibiting photosensitivity." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000927 ! photosensitivity +property_value: RO:0002604 PATO:0000546 + +[Term] +id: PATO:0000548 +name: obsolete blue light sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000549 +name: obsolete far red light sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000550 +name: obsolete red light sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000551 +name: obsolete u v light sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000552 +name: obsolete absolute temperature sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000553 +name: obsolete relative temperature sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000554 +name: obsolete cold sensitive +is_obsolete: true + +[Term] +id: PATO:0000555 +name: obsolete heat sensitive +is_obsolete: true + +[Term] +id: PATO:0000556 +name: obsolete thermoinsensitive +synonym: "thermoresistant" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000557 +name: obsolete thermosensitive +is_obsolete: true + +[Term] +id: PATO:0000558 +name: obsolete size value +is_obsolete: true + +[Term] +id: PATO:0000559 +name: obsolete absolute size value +is_obsolete: true + +[Term] +id: PATO:0000560 +name: obsolete height value +is_obsolete: true + +[Term] +id: PATO:0000561 +name: obsolete length value +is_obsolete: true + +[Term] +id: PATO:0000562 +name: obsolete mass value +is_obsolete: true + +[Term] +id: PATO:0000563 +name: obsolete relative size value +is_obsolete: true + +[Term] +id: PATO:0000564 +name: obsolete thickness value +is_obsolete: true + +[Term] +id: PATO:0000565 +name: obsolete volume value +is_obsolete: true + +[Term] +id: PATO:0000566 +name: obsolete width value +synonym: ":breadth" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000567 +name: obsolete absolute height value +is_obsolete: true + +[Term] +id: PATO:0000568 +name: obsolete relative height value +is_obsolete: true + +[Term] +id: PATO:0000569 +name: decreased height +def: "A height which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "short" RELATED [] +is_a: PATO:0000119 ! height +is_a: PATO:0000587 ! decreased size +property_value: RO:0002604 PATO:0000570 + +[Term] +id: PATO:0000570 +name: increased height +def: "A height which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "tall" RELATED [] +is_a: PATO:0000119 ! height +is_a: PATO:0000586 ! increased size +property_value: RO:0002604 PATO:0000569 + +[Term] +id: PATO:0000571 +name: obsolete absolute length value +is_obsolete: true + +[Term] +id: PATO:0000572 +name: obsolete relative length value +is_obsolete: true + +[Term] +id: PATO:0000573 +name: increased length +def: "A length quality which is relatively large." [PATOC:GVG] +subset: value_slim +synonym: "long" EXACT [] +is_a: PATO:0000122 ! length +is_a: PATO:0000586 ! increased size +property_value: RO:0002604 PATO:0000574 + +[Term] +id: PATO:0000574 +name: decreased length +def: "A length quality which is relatively small." [PATOC:GVG] +subset: value_slim +synonym: "short" EXACT [] +synonym: "shortened" RELATED [] +synonym: "stubby" RELATED [] +is_a: PATO:0000122 ! length +is_a: PATO:0000587 ! decreased size +property_value: RO:0002604 PATO:0000573 + +[Term] +id: PATO:0000575 +name: obsolete absolute mass value +is_obsolete: true + +[Term] +id: PATO:0000576 +name: obsolete relative mass value +is_obsolete: true + +[Term] +id: PATO:0000577 +name: obsolete weight value +is_obsolete: true + +[Term] +id: PATO:0000580 +name: obsolete absolute weight value +is_obsolete: true + +[Term] +id: PATO:0000581 +name: obsolete relative weight value +is_obsolete: true + +[Term] +id: PATO:0000582 +name: increased weight +def: "A weight which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "heavy" EXACT [] +synonym: "high weight" EXACT [] +is_a: PATO:0000128 ! weight +is_a: PATO:0002245 ! increased force +property_value: RO:0002604 PATO:0000583 + +[Term] +id: PATO:0000583 +name: decreased weight +def: "A weight which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "light weight" EXACT [] +synonym: "low weight" EXACT [] +is_a: PATO:0000128 ! weight +is_a: PATO:0002246 ! decreased force +property_value: RO:0002604 PATO:0000582 + +[Term] +id: PATO:0000584 +name: hypertrophic +def: "An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ)." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +synonym: "hypertrophy" NARROW [] +is_a: PATO:0000595 ! increased volume +property_value: RO:0002604 PATO:0000585 + +[Term] +id: PATO:0000585 +name: hypotrophic +alt_id: PATO:0000412 +def: "A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ)." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +synonym: "shrunken" EXACT [] +is_a: PATO:0000596 ! decreased volume +property_value: RO:0002604 PATO:0000584 + +[Term] +id: PATO:0000586 +name: increased size +alt_id: PATO:0001202 +def: "A size quality which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "big" RELATED [] +synonym: "enlarged" RELATED [] +synonym: "expanded" RELATED [] +synonym: "great" RELATED [] +synonym: "large" RELATED [] +is_a: PATO:0000117 ! size +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0000587 + +[Term] +id: PATO:0000587 +name: decreased size +def: "A size quality which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "hypoplasia" NARROW [] +synonym: "reduced" RELATED [] +synonym: "small" RELATED [] +synonym: "tiny" RELATED [] +synonym: "underdeveloped" NARROW [] +is_a: PATO:0000117 ! size +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0000586 + +[Term] +id: PATO:0000588 +name: vestigial +def: "A quality inhering in a bearer by virtue of the bearer's being a remnant structure from earlier development or evolution." [PATOC:MAH] +comment: May be part of an animal (such as an organ or bone) that is no longer used by the species and has therefore become smaller or less developed. +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000589 +name: obsolete absolute thickness value +is_obsolete: true + +[Term] +id: PATO:0000590 +name: obsolete relative thickness value +is_obsolete: true + +[Term] +id: PATO:0000591 +name: increased thickness +def: "A thickness which is relatively high." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "high thickness" EXACT [] +synonym: "stout" EXACT [] +synonym: "thick" RELATED [] +synonym: "thickened" EXACT [] +is_a: PATO:0000586 ! increased size +is_a: PATO:0000915 ! thickness +property_value: RO:0002604 PATO:0000592 + +[Term] +id: PATO:0000592 +name: decreased thickness +def: "A thickness which is relatively low." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "low thickness" EXACT [] +synonym: "slender" RELATED [] +synonym: "thin" RELATED [] +is_a: PATO:0000587 ! decreased size +is_a: PATO:0000915 ! thickness +property_value: RO:0002604 PATO:0000591 + +[Term] +id: PATO:0000593 +name: obsolete absolute volume value +is_obsolete: true + +[Term] +id: PATO:0000594 +name: obsolete relative volume value +is_obsolete: true + +[Term] +id: PATO:0000595 +name: increased volume +def: "A volume which is relatively high." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "high volume" EXACT [] +synonym: "large volume" RELATED [] +is_a: PATO:0000586 ! increased size +is_a: PATO:0000918 ! volume +property_value: RO:0002604 PATO:0000596 + +[Term] +id: PATO:0000596 +name: decreased volume +def: "A volume which is relatively low." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "low volume" EXACT [] +synonym: "small volume" RELATED [] +is_a: PATO:0000587 ! decreased size +is_a: PATO:0000918 ! volume +property_value: RO:0002604 PATO:0000595 + +[Term] +id: PATO:0000597 +name: obsolete absolute width value +is_obsolete: true + +[Term] +id: PATO:0000598 +name: obsolete relative width value +is_obsolete: true + +[Term] +id: PATO:0000599 +name: decreased width +def: "A width which is relatively small." [PATOC:GVG] +subset: value_slim +synonym: "narrow" RELATED [] +is_a: PATO:0000587 ! decreased size +is_a: PATO:0000921 ! width +property_value: RO:0002604 PATO:0000600 + +[Term] +id: PATO:0000600 +name: increased width +def: "A width which is relatively large." [PATOC:GVG] +subset: value_slim +synonym: "broad" RELATED [] +synonym: "wide" RELATED [] +synonym: "wide/broad" RELATED [] +is_a: PATO:0000586 ! increased size +is_a: PATO:0000921 ! width +property_value: RO:0002604 PATO:0000599 + +[Term] +id: PATO:0000601 +name: obsolete spatial value +is_obsolete: true + +[Term] +id: PATO:0000602 +name: obsolete angle value +is_obsolete: true + +[Term] +id: PATO:0000603 +name: obsolete closure value +is_obsolete: true + +[Term] +id: PATO:0000604 +name: obsolete orientation value +is_obsolete: true + +[Term] +id: PATO:0000605 +name: obsolete placement value +synonym: "location" RELATED [] +synonym: "position" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000606 +name: obsolete absolute angle value +is_obsolete: true + +[Term] +id: PATO:0000607 +name: obsolete relative angle value +is_obsolete: true + +[Term] +id: PATO:0000608 +name: closed +def: "A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view." [answers.com:answers.com] +subset: value_slim +synonym: "blocked" RELATED [] +is_a: PATO:0000136 ! closure +disjoint_from: PATO:0000610 ! open +property_value: RO:0002604 PATO:0000610 + +[Term] +id: PATO:0000609 +name: closure incomplete +def: "A morphological quality inhering in a bearer by virtue of the bearer's affording not completed blocked passage or view." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000610 ! open + +[Term] +id: PATO:0000610 +name: open +def: "A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view." [answers.com:answers.com] +subset: value_slim +is_a: PATO:0000136 ! closure +property_value: RO:0002604 PATO:0000608 + +[Term] +id: PATO:0000611 +name: obsolete absolute orientation value +is_obsolete: true + +[Term] +id: PATO:0000612 +name: obsolete relative orientation value +is_obsolete: true + +[Term] +id: PATO:0000613 +name: disoriented +def: "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000330 ! irregular spatial pattern +property_value: RO:0002604 PATO:0000614 + +[Term] +id: PATO:0000614 +name: oriented +def: "A pattern where all the repeated elements are oriented in the same direction." [PATOC:MAH] +subset: value_slim +is_a: PATO:0000440 ! regular spatial pattern +property_value: RO:0002604 PATO:0000613 + +[Term] +id: PATO:0000615 +name: wholly anterioralized +def: "An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally anterior structures." [PATOC:GVG] +subset: value_slim +synonym: "anterioralized" RELATED [] +is_a: PATO:0030000 ! anterioralized + +[Term] +id: PATO:0000616 +name: asymmetrical +def: "A symmetry quality inhering in a bearer by virtue of the bearer's lacking symmetry." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "asymmetric" EXACT [] +synonym: "asymmetry" EXACT [] +is_a: PATO:0000965 ! symmetry + +[Term] +id: PATO:0000617 +name: bent +def: "A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length." [PATOC:MAH] +subset: value_slim +synonym: "angled" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000618 +name: bilateral +def: "A positional quality inhering in a bearer by virtue of the bearer's having two sides; two-sided." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000619 +name: crowded +def: "A positional quality inhering in a bearer by virtue of the bearer's being overfilled." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000140 ! position +property_value: RO:0002604 PATO:0000633 + +[Term] +id: PATO:0000620 +name: wholly dorsalized +def: "A dorsalized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally dorsal structures." [PATOC:melissa] +subset: mpath_slim +subset: value_slim +synonym: "dorsalized" RELATED [] +is_a: PATO:0030001 ! dorsalized + +[Term] +id: PATO:0000622 +name: erect +def: "A positional quality inhering in a bearer by virtue of the bearer's being upright in position or posture." [WordNet:WordNet] +subset: value_slim +synonym: "upright" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000623 +name: exserted +def: "A quality inhering in a bearer by virtue of the bearer's protruding or projecting from the body." [sdvc:sdvc] +subset: value_slim +synonym: "prolapse" RELATED [] +synonym: "prolapsed" RELATED [] +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0000624 +name: inserted into +def: "A spatial quality inhering in a bearer by virtue of the bearer's becoming joined together with an additional entity." [PATOC:nw] +subset: relational_slim +subset: value_slim +synonym: "inserted" EXACT [] +synonym: "introduced into" RELATED [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000625 +name: inverted +def: "An oriented quality inhering in a bearer by virtue of the bearer's being reversed in position, order, or condition." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "backward" RELATED [] +synonym: "reversed" RELATED [] +is_a: PATO:0000614 ! oriented + +[Term] +id: PATO:0000626 +name: lateralized +def: "A positional quality inhering in a bearer by virtue of the bearer's being moved or displaced to one side so as to make lateral." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000627 +name: localized +def: "A spatial pattern quality inhering in a bearer by virtue of the bearer's being confined or restricted to a particular location." [WordNet:WordNet] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +synonym: "focal" EXACT [] +synonym: "localised" EXACT [] +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0000628 +name: mislocalised +alt_id: PATO:0000621 +def: "A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "ectopic" EXACT [] +synonym: "mislocalized" EXACT [] +is_a: PATO:0002181 ! displaced + +[Term] +id: PATO:0000629 +name: misrouted +def: "A positional quality inhering in a bearer by virtue of the bearer's having mistakenly taken course, way, or passage; ill-routed." [NDI:NDI] +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000630 +name: wholly posterioralized +def: "A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally posterior structures." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "posterioralized" RELATED [] +is_a: PATO:0030002 ! posterioralized + +[Term] +id: PATO:0000631 +name: prostrate +def: "A positional quality inhering in a bearer by virtue of the bearer's being stretched out and lying at full length along the ground." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000632 +name: symmetrical +def: "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division by a longitudinal plane into similar halves." [PATOC:GVG] +comment: similar pattern in both halves +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "symmetric" EXACT [] +is_a: PATO:0000440 ! regular spatial pattern +is_a: PATO:0000965 ! symmetry + +[Term] +id: PATO:0000633 +name: uncrowded +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +property_value: RO:0002604 PATO:0000619 + +[Term] +id: PATO:0000634 +name: unilateral +def: "A spatial pattern inhering in a bearer by virtue of the bearer's involvement of only one part or side." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0000635 +name: unlocalised +def: "A spatial pattern inhering in a bearer by virtue of the bearer's not being confined or restricted to a particular location." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0000636 +name: wholly ventralized +def: "A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally ventral structures." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "ventralized" RELATED [] +is_a: PATO:0030003 ! ventralized + +[Term] +id: PATO:0000637 +name: obsolete structure value +is_obsolete: true + +[Term] +id: PATO:0000638 +name: apoptotic +def: "A structural quality inhering in a bearer by virtue of the bearer's consisting of blebbing of the nucleus and DNA fragmentation due to the cell undergoing a specific form of programmed cell death termed apoptosis." [PATOC:GVG] +subset: value_slim +xref: GO:0006915 +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000639 +name: degenerate +def: "A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process." [PATOC:mb, PATOC:PortlandMeetingFeb2015] +subset: mpath_slim +subset: value_slim +synonym: "degeneration" NARROW [] +is_a: PATO:0002037 ! degeneration +disjoint_from: PATO:0001623 ! atrophied +disjoint_from: PATO:0002038 ! non-degenerate +relationship: has_part PATO:0000585 ! hypotrophic +property_value: RO:0002604 PATO:0002038 + +[Term] +id: PATO:0000640 +name: dysplastic +def: "A structural quality inhering in a bearer by virtue of the bearer's exhibiting an alteration in size, shape or organization of its constituent cells." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +synonym: "dysplasia" NARROW [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000641 +name: obsolete deposition defective +is_obsolete: true + +[Term] +id: PATO:0000642 +name: fused with +def: "A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "coalesced" RELATED [] +synonym: "fused" EXACT [] +synonym: "fused to" EXACT [] +synonym: "joined with" RELATED [] +synonym: "merged with" RELATED [] +is_a: PATO:0000141 ! structure +property_value: RO:0002604 PATO:0000651 + +[Term] +id: PATO:0000643 +name: herniated +def: "A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it." [spinalstenosis:spinalstenosis] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0000644 +name: hyperplastic +alt_id: PATO:0000943 +def: "A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells." [Wikipedia:http\://en.wikipedia.org/wiki/Hyperplastic] +subset: mpath_slim +subset: value_slim +synonym: "hyperplasia" EXACT [] +synonym: "overdeveloped" RELATED [] +is_a: PATO:0000586 ! increased size +property_value: RO:0002604 PATO:0000645 + +[Term] +id: PATO:0000645 +name: hypoplastic +alt_id: PATO:0000942 +def: "A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "hypoplasia" EXACT [] +synonym: "underdeveloped" RELATED [] +is_a: PATO:0000587 ! decreased size +is_a: PATO:0002290 ! aplastic/hypoplastic +property_value: RO:0002604 PATO:0000644 + +[Term] +id: PATO:0000646 +name: malformed +def: "A morphological quality inhering in a bearer by virtue of the bearer's being distorted during formation." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +synonym: "malformation" NARROW [] +is_a: PATO:0001617 ! deformed + +[Term] +id: PATO:0000647 +name: necrotic +def: "A structural quality inhering in a bearer by virtue of the bearer's undergoing unprogrammed cell death." [Wikipedia:http\://en.wikipedia.org/wiki/Necrotic] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000648 +name: obstructed +def: "A morphological quality inhering in a bearer by virtue of the bearer's being blocked or filled with obstacles or an obstacle." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000608 ! closed + +[Term] +id: PATO:0000651 +name: unfused from +def: "A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity." [PATOC:nw] +subset: relational_slim +subset: value_slim +synonym: "unfused" EXACT [] +is_a: PATO:0000141 ! structure +property_value: RO:0002604 PATO:0000642 + +[Term] +id: PATO:0000652 +name: obsolete substance value +is_obsolete: true + +[Term] +id: PATO:0000653 +name: obsolete addictive substance value +is_obsolete: true + +[Term] +id: PATO:0000654 +name: obsolete alcochol value +is_obsolete: true + +[Term] +id: PATO:0000655 +name: obsolete amphetamine value +is_obsolete: true + +[Term] +id: PATO:0000656 +name: obsolete time_quantity +is_obsolete: true + +[Term] +id: PATO:0000657 +name: obsolete length_quantity +is_obsolete: true + +[Term] +id: PATO:0000658 +name: obsolete metamphetamine value +is_obsolete: true + +[Term] +id: PATO:0000659 +name: obsolete temparature_quantity +is_obsolete: true + +[Term] +id: PATO:0000660 +name: obsolete angle_quantity +is_obsolete: true + +[Term] +id: PATO:0000661 +name: obsolete solid substance value +is_obsolete: true + +[Term] +id: PATO:0000662 +name: obsolete volume_quantity +is_obsolete: true + +[Term] +id: PATO:0000663 +name: obsolete occurrent +is_obsolete: true + +[Term] +id: PATO:0000664 +name: obsolete substance_quantity +is_obsolete: true + +[Term] +id: PATO:0000665 +name: high brightness +def: "A color brightness which is relatively high." [PATOC:MAH] +subset: value_slim +synonym: "light" EXACT [] +is_a: PATO:0000016 ! color brightness +property_value: RO:0002604 PATO:0000327 + +[Term] +id: PATO:0000666 +name: obsolete energy_quantity +is_obsolete: true + +[Term] +id: PATO:0000667 +name: obsolete liquid substance value +is_obsolete: true + +[Term] +id: PATO:0000668 +name: obsolete mass_quantity +is_obsolete: true + +[Term] +id: PATO:0000669 +name: obsolete concentration_unit +is_obsolete: true + +[Term] +id: PATO:0000670 +name: obsolete saccharin versus water value +is_obsolete: true + +[Term] +id: PATO:0000671 +name: obsolete water value +is_obsolete: true + +[Term] +id: PATO:0000672 +name: obsolete unit +is_obsolete: true + +[Term] +id: PATO:0000673 +name: obsolete temperature value +is_obsolete: true + +[Term] +id: PATO:0000674 +name: obsolete absolute temperature value +is_obsolete: true + +[Term] +id: PATO:0000675 +name: obsolete body temperature value +is_obsolete: true + +[Term] +id: PATO:0000676 +name: obsolete relative temperature value +is_obsolete: true + +[Term] +id: PATO:0000679 +name: obsolete temporal value +is_obsolete: true + +[Term] +id: PATO:0000680 +name: obsolete absolute temporal value +is_obsolete: true + +[Term] +id: PATO:0000681 +name: obsolete incidence value +is_obsolete: true + +[Term] +id: PATO:0000682 +name: obsolete rate value +is_obsolete: true + +[Term] +id: PATO:0000683 +name: obsolete relative temporal value +is_obsolete: true + +[Term] +id: PATO:0000684 +name: obsolete absolute incidence value +is_obsolete: true + +[Term] +id: PATO:0000685 +name: obsolete relative incidence value +is_obsolete: true + +[Term] +id: PATO:0000686 +name: obsolete absolute rate value +is_obsolete: true + +[Term] +id: PATO:0000687 +name: obsolete relative rate value +is_obsolete: true + +[Term] +id: PATO:0000688 +name: asynchronous +def: "A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000057 ! occurrence +property_value: RO:0002604 PATO:0000695 + +[Term] +id: PATO:0000689 +name: continuous +alt_id: PATO:0000429 +def: "A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +synonym: "uninterrupted" EXACT [] +is_a: PATO:0000057 ! occurrence +property_value: RO:0002604 PATO:0000690 + +[Term] +id: PATO:0000690 +name: discontinuous +alt_id: PATO:0000426 +def: "A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +synonym: "intermittent" RELATED [] +synonym: "interrupted" EXACT [] +is_a: PATO:0000057 ! occurrence +property_value: RO:0002604 PATO:0000689 + +[Term] +id: PATO:0000692 +name: heterochronic +def: "A quality of a single process inhering in a bearer by virtue of the bearer's origin or development at an unusual time or out of the regular sequence." [answers.com:answers.com] +subset: value_slim +is_a: PATO:0000057 ! occurrence + +[Term] +id: PATO:0000693 +name: obsolete late +is_obsolete: true + +[Term] +id: PATO:0000694 +name: premature +alt_id: PATO:0000691 +alt_id: PATO:0002086 +def: "A quality of a process which starts earlier than the natural start time or the reference process." [PATO:LC] +subset: value_slim +synonym: "advanced" EXACT [] +synonym: "early" RELATED [] +synonym: "precocious" RELATED [] +is_a: PATO:0002325 ! onset quality + +[Term] +id: PATO:0000695 +name: synchronous +def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000057 ! occurrence +property_value: RO:0002604 PATO:0000688 + +[Term] +id: PATO:0000696 +name: obsolete texture value +is_obsolete: true + +[Term] +id: PATO:0000697 +name: obsolete relative texture value +is_obsolete: true + +[Term] +id: PATO:0000698 +name: obsolete floury +is_obsolete: true + +[Term] +id: PATO:0000699 +name: obsolete glutinous +is_obsolete: true + +[Term] +id: PATO:0000700 +name: rough +alt_id: PATO:0001616 +def: "A texture quality inhering in a bearer by virtue of the bearer's irregular surface." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "coarse" EXACT [] +is_a: PATO:0000150 ! texture +property_value: RO:0002604 PATO:0000701 + +[Term] +id: PATO:0000701 +name: smooth +def: "A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000150 ! texture +property_value: RO:0002604 PATO:0000700 + +[Term] +id: PATO:0000702 +name: obsolete threshold value +is_obsolete: true + +[Term] +id: PATO:0000703 +name: obsolete absolute threshold value +is_obsolete: true + +[Term] +id: PATO:0000704 +name: obsolete pain threshold value +is_obsolete: true + +[Term] +id: PATO:0000705 +name: obsolete relative threshold value +is_obsolete: true + +[Term] +id: PATO:0000706 +name: increased threshold +alt_id: PATO:0000709 +def: "A threshold which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high threshold" EXACT [] +is_a: PATO:0000152 ! threshold +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0000708 + +[Term] +id: PATO:0000708 +name: decreased threshold +alt_id: PATO:0000707 +def: "A threshold which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "low threshold" EXACT [] +is_a: PATO:0000152 ! threshold +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0000706 + +[Term] +id: PATO:0000710 +name: obsolete time value +is_obsolete: true + +[Term] +id: PATO:0000711 +name: obsolete absolute time value +is_obsolete: true + +[Term] +id: PATO:0000712 +name: obsolete bouts value +is_obsolete: true + +[Term] +id: PATO:0000713 +name: obsolete relative time value +is_obsolete: true + +[Term] +id: PATO:0000714 +name: obsolete latency value +is_obsolete: true + +[Term] +id: PATO:0000717 +name: obsolete viability value +is_obsolete: true + +[Term] +id: PATO:0000718 +name: lethal (sensu genetics) +def: "A viability quality inhering in a population by virtue of the bearer's long term survival inability." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0000719 +name: viable +def: "A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0000720 +name: obsolete yield value +is_obsolete: true + +[Term] +id: PATO:0000721 +name: obsolete absolute yield value +is_obsolete: true + +[Term] +id: PATO:0000722 +name: obsolete relative yield value +is_obsolete: true + +[Term] +id: PATO:0000723 +name: obsolete high yield +is_obsolete: true + +[Term] +id: PATO:0000724 +name: obsolete low yield +is_obsolete: true + +[Term] +id: PATO:0000725 +name: obsolete function value +is_obsolete: true + +[Term] +id: PATO:0000726 +name: obsolete autonomic function value +is_obsolete: true + +[Term] +id: PATO:0000727 +name: obsolete behavioral function value +is_obsolete: true + +[Term] +id: PATO:0000728 +name: obsolete metabolic function value +is_obsolete: true + +[Term] +id: PATO:0000729 +name: obsolete physiological function value +is_obsolete: true + +[Term] +id: PATO:0000730 +name: obsolete relative function value +is_obsolete: true + +[Term] +id: PATO:0000731 +name: obsolete body position value +is_obsolete: true + +[Term] +id: PATO:0000732 +name: obsolete body tone value +is_obsolete: true + +[Term] +id: PATO:0000733 +name: obsolete piloerection value +is_obsolete: true + +[Term] +id: PATO:0000734 +name: obsolete abdominal tone value +is_obsolete: true + +[Term] +id: PATO:0000735 +name: obsolete limb tone value +is_obsolete: true + +[Term] +id: PATO:0000736 +name: obsolete dysfunctional value +is_obsolete: true + +[Term] +id: PATO:0000737 +name: obsolete functional value +is_obsolete: true + +[Term] +id: PATO:0000738 +name: obsolete enzyme function value +is_obsolete: true + +[Term] +id: PATO:0000739 +name: obsolete absolute enzyme function value +is_obsolete: true + +[Term] +id: PATO:0000740 +name: obsolete relative enzyme function value +is_obsolete: true + +[Term] +id: PATO:0000741 +name: obsolete high enzyme function value +is_obsolete: true + +[Term] +id: PATO:0000742 +name: obsolete low enzyme function value +is_obsolete: true + +[Term] +id: PATO:0000743 +name: obsolete arousal value +is_obsolete: true + +[Term] +id: PATO:0000744 +name: obsolete balance value +is_obsolete: true + +[Term] +id: PATO:0000745 +name: obsolete behavioral quality value +is_obsolete: true + +[Term] +id: PATO:0000746 +name: obsolete consumption value +is_obsolete: true + +[Term] +id: PATO:0000747 +name: obsolete coordination value +is_obsolete: true + +[Term] +id: PATO:0000748 +name: obsolete discrimination value +is_obsolete: true + +[Term] +id: PATO:0000749 +name: obsolete gait value +is_obsolete: true + +[Term] +id: PATO:0000750 +name: obsolete learning and memory value +is_obsolete: true + +[Term] +id: PATO:0000751 +name: obsolete locomotor activity value +is_obsolete: true + +[Term] +id: PATO:0000752 +name: obsolete mating value +is_obsolete: true + +[Term] +id: PATO:0000753 +name: obsolete spontaneous activity value +is_obsolete: true + +[Term] +id: PATO:0000754 +name: obsolete startle response +is_obsolete: true + +[Term] +id: PATO:0000755 +name: obsolete vocalization value +is_obsolete: true + +[Term] +id: PATO:0000756 +name: obsolete transfer arousal value +is_obsolete: true + +[Term] +id: PATO:0000757 +name: balanced +def: "A balance quality inhering in a bearer by virtue of the bearer's having balance." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000185 ! balance +disjoint_from: PATO:0000758 ! unbalanced +property_value: RO:0002604 PATO:0000758 + +[Term] +id: PATO:0000758 +name: unbalanced +def: "A balance quality inhering in a bearer by virtue of the bearer's lacking balance." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000185 ! balance +property_value: RO:0002604 PATO:0000757 + +[Term] +id: PATO:0000759 +name: bang sensitive +def: "A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting paralytic behaviour when subjected to mechanical shock." [PATOC:flybase] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000186 ! behavioral quality +relationship: has_part PATO:0000763 ! paralysed + +[Term] +id: PATO:0000760 +name: increased behavioural activity +def: "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity." [PATOC:GVG] +subset: value_slim +synonym: "hyperactive" EXACT [] +is_a: PATO:0001707 ! behavioural active +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0000761 + +[Term] +id: PATO:0000761 +name: decreased behavioural activity +def: "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity." [PATOC:GVG] +subset: value_slim +synonym: "hypoactive" EXACT [] +is_a: PATO:0001707 ! behavioural active +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0000760 + +[Term] +id: PATO:0000762 +name: obsolete impaired +def: "Diminished, damaged, or weakened." [answers.com:answers.com] +subset: value_slim +is_obsolete: true +consider: PATO:0001624 + +[Term] +id: PATO:0000763 +name: paralysed +def: "A behavioral quality inhering in a bearer by virtue of the bearer's being affected by loss of the ability to move a body part." [PATOC:GVG] +subset: value_slim +synonym: "palsy" NARROW [] +is_a: PATO:0002076 ! movement behavioral quality + +[Term] +id: PATO:0000764 +name: passive +def: "A behavioral quality inhering in a bearer by virtue of the bearer's receiving or being subjected to an action without responding or initiating an action in return." [www.answers.com:www.answers.com] +subset: value_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0000765 +name: obsolete absolute consumption value +is_obsolete: true + +[Term] +id: PATO:0000766 +name: obsolete relative consumption value +is_obsolete: true + +[Term] +id: PATO:0000767 +name: obsolete increased consumption +def: "A consumption which is relatively high." [PATOC:GVG] +comment: Use GO:0007631 +subset: relational_slim +subset: value_slim +synonym: "high consumption" EXACT [] +synonym: "increased propensity to consume" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000768 +name: obsolete decreased consumption +def: "A consumption which is relatively low." [PATOC:GVG] +comment: Use GO:0007631 +subset: relational_slim +subset: value_slim +synonym: "decreased propensity to consume" RELATED [] +synonym: "low consumption" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0000769 +name: coordinated +def: "A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000188 ! coordination +disjoint_from: PATO:0000770 ! uncoordinated +property_value: RO:0002604 PATO:0000770 + +[Term] +id: PATO:0000770 +name: uncoordinated +def: "A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000188 ! coordination +property_value: RO:0002604 PATO:0000769 + +[Term] +id: PATO:0000771 +name: aversion +def: "A preference quality in a bearer by virtue of the bearer's disliking a perceived stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000773 ! preference +disjoint_from: PATO:0000772 ! indifference + +[Term] +id: PATO:0000772 +name: indifference +def: "A preference quality in a bearer by virtue of the bearer's having no preference to a perceived stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000773 ! preference + +[Term] +id: PATO:0000773 +name: preference +def: "A discrimination quality in a bearer by virtue of the bearer's liking a perceived stimulus." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0000189 ! discrimination + +[Term] +id: PATO:0000774 +name: obsolete bizarre gate +is_obsolete: true + +[Term] +id: PATO:0000775 +name: obsolete learning value +is_obsolete: true + +[Term] +id: PATO:0000776 +name: obsolete memory value +is_obsolete: true + +[Term] +id: PATO:0000777 +name: obsolete long term memory value +is_obsolete: true + +[Term] +id: PATO:0000778 +name: obsolete short term memory value +is_obsolete: true + +[Term] +id: PATO:0000779 +name: obsolete absolute locomotor activity value +is_obsolete: true + +[Term] +id: PATO:0000780 +name: obsolete relative locomotor activity value +is_obsolete: true + +[Term] +id: PATO:0000781 +name: obsolete circulatory function value +is_obsolete: true + +[Term] +id: PATO:0000782 +name: obsolete defensive function value +is_obsolete: true + +[Term] +id: PATO:0000783 +name: obsolete digestive function value +is_obsolete: true + +[Term] +id: PATO:0000784 +name: obsolete excretory function value +is_obsolete: true + +[Term] +id: PATO:0000785 +name: obsolete muscle function value +is_obsolete: true + +[Term] +id: PATO:0000786 +name: obsolete neural function value +is_obsolete: true + +[Term] +id: PATO:0000787 +name: obsolete neurobehavioral function value +is_obsolete: true + +[Term] +id: PATO:0000788 +name: obsolete reproductive function value +is_obsolete: true + +[Term] +id: PATO:0000789 +name: obsolete respiratory function value +is_obsolete: true + +[Term] +id: PATO:0000790 +name: obsolete heart rate value +is_obsolete: true + +[Term] +id: PATO:0000791 +name: obsolete immune function value +is_obsolete: true + +[Term] +id: PATO:0000792 +name: obsolete repair function value +is_obsolete: true + +[Term] +id: PATO:0000793 +name: obsolete immubocompetent value +is_obsolete: true + +[Term] +id: PATO:0000794 +name: obsolete immunodeficient value +is_obsolete: true + +[Term] +id: PATO:0000795 +name: obsolete healing value +is_obsolete: true + +[Term] +id: PATO:0000796 +name: obsolete regeneration value +is_obsolete: true + +[Term] +id: PATO:0000797 +name: obsolete urination value +is_obsolete: true + +[Term] +id: PATO:0000798 +name: obsolete defecation value +is_obsolete: true + +[Term] +id: PATO:0000799 +name: obsolete muscle elevation value +is_obsolete: true + +[Term] +id: PATO:0000800 +name: obsolete muscle strength value +is_obsolete: true + +[Term] +id: PATO:0000801 +name: obsolete motor function value +is_obsolete: true + +[Term] +id: PATO:0000802 +name: obsolete sensory function value +is_obsolete: true + +[Term] +id: PATO:0000803 +name: obsolete tactile response value +is_obsolete: true + +[Term] +id: PATO:0000804 +name: obsolete motor performance value +is_obsolete: true + +[Term] +id: PATO:0000805 +name: obsolete auditory value +is_obsolete: true + +[Term] +id: PATO:0000806 +name: obsolete olfactory value +is_obsolete: true + +[Term] +id: PATO:0000807 +name: obsolete proprioreception value +is_obsolete: true + +[Term] +id: PATO:0000808 +name: obsolete reflex value +is_obsolete: true + +[Term] +id: PATO:0000809 +name: obsolete taste value +is_obsolete: true + +[Term] +id: PATO:0000810 +name: obsolete touch value +is_obsolete: true + +[Term] +id: PATO:0000811 +name: obsolete visual value +is_obsolete: true + +[Term] +id: PATO:0000812 +name: obsolete odor acuity value +is_obsolete: true + +[Term] +id: PATO:0000813 +name: obsolete odor type value +is_obsolete: true + +[Term] +id: PATO:0000814 +name: obsolete taste acuity value +is_obsolete: true + +[Term] +id: PATO:0000815 +name: obsolete absolute odor acuity value +is_obsolete: true + +[Term] +id: PATO:0000816 +name: obsolete relative odor acuity value +is_obsolete: true + +[Term] +id: PATO:0000817 +name: obsolete anosmia +is_obsolete: true + +[Term] +id: PATO:0000818 +name: obsolete concentration_quantity +is_obsolete: true + +[Term] +id: PATO:0000819 +name: obsolete quantity +is_obsolete: true + +[Term] +id: PATO:0000820 +name: obsolete absolute taste acuity value +is_obsolete: true + +[Term] +id: PATO:0000821 +name: obsolete relative taste acuity value +is_obsolete: true + +[Term] +id: PATO:0000822 +name: obsolete taste type value +is_obsolete: true + +[Term] +id: PATO:0000823 +name: obsolete quinine taste +is_obsolete: true + +[Term] +id: PATO:0000824 +name: obsolete water taste +is_obsolete: true + +[Term] +id: PATO:0000825 +name: obsolete visual ability value +is_obsolete: true + +[Term] +id: PATO:0000826 +name: obsolete visual acuity value +is_obsolete: true + +[Term] +id: PATO:0000827 +name: obsolete visual threshold value +is_obsolete: true + +[Term] +id: PATO:0000828 +name: obsolete visual placing value +is_obsolete: true + +[Term] +id: PATO:0000829 +name: obsolete absolute visual ability value +is_obsolete: true + +[Term] +id: PATO:0000830 +name: obsolete relative visual ability value +is_obsolete: true + +[Term] +id: PATO:0000831 +name: obsolete absolute visual acuity value +is_obsolete: true + +[Term] +id: PATO:0000832 +name: obsolete relative visual acuity value +is_obsolete: true + +[Term] +id: PATO:0000833 +name: obsolete absolute visual threshold value +is_obsolete: true + +[Term] +id: PATO:0000834 +name: obsolete relative visual threshold value +is_obsolete: true + +[Term] +id: PATO:0000835 +name: obsolete auditory acuity value +is_obsolete: true + +[Term] +id: PATO:0000836 +name: obsolete auditory ability value +is_obsolete: true + +[Term] +id: PATO:0000837 +name: obsolete auditory threshold value +is_obsolete: true + +[Term] +id: PATO:0000838 +name: obsolete absolute auditory ability value +is_obsolete: true + +[Term] +id: PATO:0000839 +name: obsolete relative auditory ability value +is_obsolete: true + +[Term] +id: PATO:0000840 +name: obsolete absolute auditory acuity value +is_obsolete: true + +[Term] +id: PATO:0000841 +name: obsolete relative auditory acuity value +is_obsolete: true + +[Term] +id: PATO:0000842 +name: obsolete absolute auditory threshold value +is_obsolete: true + +[Term] +id: PATO:0000843 +name: obsolete relative auditory threshold value +is_obsolete: true + +[Term] +id: PATO:0000844 +name: obsolete auditory acuity +is_obsolete: true + +[Term] +id: PATO:0000845 +name: obsolete auditory ability +is_obsolete: true + +[Term] +id: PATO:0000846 +name: obsolete auditory threshold +is_obsolete: true + +[Term] +id: PATO:0000847 +name: obsolete absolute auditory acuity +is_obsolete: true + +[Term] +id: PATO:0000848 +name: obsolete relative auditory acuity +is_obsolete: true + +[Term] +id: PATO:0000849 +name: obsolete absolute auditory ability +is_obsolete: true + +[Term] +id: PATO:0000850 +name: obsolete relative auditory ability +is_obsolete: true + +[Term] +id: PATO:0000851 +name: obsolete absolute auditory threshold +is_obsolete: true + +[Term] +id: PATO:0000852 +name: obsolete relative auditory threshold +is_obsolete: true + +[Term] +id: PATO:0000853 +name: obsolete blinking reflex value +is_obsolete: true + +[Term] +id: PATO:0000854 +name: obsolete contact righting reflex value +is_obsolete: true + +[Term] +id: PATO:0000855 +name: obsolete corneal reflex value +is_obsolete: true + +[Term] +id: PATO:0000856 +name: obsolete flinch reflex value +is_obsolete: true + +[Term] +id: PATO:0000857 +name: obsolete lordosis reflex value +is_obsolete: true + +[Term] +id: PATO:0000858 +name: obsolete ocular reflex value +is_obsolete: true + +[Term] +id: PATO:0000859 +name: obsolete pinna reflex value +is_obsolete: true + +[Term] +id: PATO:0000860 +name: obsolete postural reflex value +is_obsolete: true + +[Term] +id: PATO:0000861 +name: obsolete proboscis extension reflex value +is_obsolete: true + +[Term] +id: PATO:0000862 +name: obsolete pupillary reflex value +is_obsolete: true + +[Term] +id: PATO:0000863 +name: obsolete righting reflex value +is_obsolete: true + +[Term] +id: PATO:0000864 +name: obsolete spinal reflex value +is_obsolete: true + +[Term] +id: PATO:0000865 +name: obsolete startle reflex value +is_obsolete: true + +[Term] +id: PATO:0000866 +name: obsolete suckling reflex value +is_obsolete: true + +[Term] +id: PATO:0000867 +name: obsolete swallowing reflex value +is_obsolete: true + +[Term] +id: PATO:0000868 +name: obsolete vibrissae reflex value +is_obsolete: true + +[Term] +id: PATO:0000869 +name: obsolete prepulse inhibition value +is_obsolete: true + +[Term] +id: PATO:0000870 +name: obsolete relative neurobehavioral function value +is_obsolete: true + +[Term] +id: PATO:0000871 +name: obsolete aggressive +is_obsolete: true + +[Term] +id: PATO:0000872 +name: obsolete anxious +is_obsolete: true + +[Term] +id: PATO:0000873 +name: obsolete cataleptic +is_obsolete: true + +[Term] +id: PATO:0000874 +name: obsolete fearful +is_obsolete: true + +[Term] +id: PATO:0000875 +name: obsolete irritable +is_obsolete: true + +[Term] +id: PATO:0000876 +name: obsolete respiratory rate value +is_obsolete: true + +[Term] +id: PATO:0000877 +name: obsolete absolute respiratory rate value +is_obsolete: true + +[Term] +id: PATO:0000878 +name: obsolete relative respiratory rate value +is_obsolete: true + +[Term] +id: PATO:0000879 +name: obsolete fecundity value +is_obsolete: true + +[Term] +id: PATO:0000880 +name: obsolete fertility value +is_obsolete: true + +[Term] +id: PATO:0000881 +name: obsolete gestational period value +is_obsolete: true + +[Term] +id: PATO:0000882 +name: obsolete litter size value +is_obsolete: true + +[Term] +id: PATO:0000883 +name: obsolete female fertility value +is_obsolete: true + +[Term] +id: PATO:0000884 +name: obsolete hybrid fertility value +is_obsolete: true + +[Term] +id: PATO:0000885 +name: obsolete male fertility value +is_obsolete: true + +[Term] +id: PATO:0000886 +name: obsolete absolute litter size value +is_obsolete: true + +[Term] +id: PATO:0000887 +name: obsolete relative litter size value +is_obsolete: true + +[Term] +id: PATO:0000888 +name: female fertile +def: "A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000277 ! female fertility +disjoint_from: PATO:0000892 ! female sterile +property_value: RO:0002604 PATO:0000892 + +[Term] +id: PATO:0000889 +name: obsolete cytoplasmic male sterility value +is_obsolete: true + +[Term] +id: PATO:0000890 +name: male sterile +def: "A male fertility quality inhering in a male by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "male infertile" RELATED [] +is_a: PATO:0000956 ! sterile +disjoint_from: PATO:0000891 ! male fertile +property_value: RO:0002604 PATO:0000891 + +[Term] +id: PATO:0000891 +name: male fertile +def: "A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000279 ! male fertility +property_value: RO:0002604 PATO:0000890 + +[Term] +id: PATO:0000892 +name: female sterile +def: "A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "female infertile" RELATED [] +is_a: PATO:0000956 ! sterile +property_value: RO:0002604 PATO:0000888 + +[Term] +id: PATO:0000893 +name: obsolete backcross fertility value +is_obsolete: true + +[Term] +id: PATO:0000894 +name: obsolete cytoplasmic sterility value +is_obsolete: true + +[Term] +id: PATO:0000895 +name: obsolete f1 fertility value +is_obsolete: true + +[Term] +id: PATO:0000896 +name: obsolete f2 fertility value +is_obsolete: true + +[Term] +id: PATO:0000897 +name: obsolete germ line dependent fertility value +is_obsolete: true + +[Term] +id: PATO:0000898 +name: obsolete intercross fertility value +is_obsolete: true + +[Term] +id: PATO:0000899 +name: obsolete soma dependent fertility value +is_obsolete: true + +[Term] +id: PATO:0000900 +name: obsolete backcross fertile +is_obsolete: true + +[Term] +id: PATO:0000901 +name: obsolete backcross sterile +synonym: "backcross infertile" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000902 +name: obsolete chinsurah boro type value +is_obsolete: true + +[Term] +id: PATO:0000903 +name: obsolete cms-hl type value +is_obsolete: true + +[Term] +id: PATO:0000904 +name: obsolete wild abortive value +is_obsolete: true + +[Term] +id: PATO:0000905 +name: obsolete f1 fertile +is_obsolete: true + +[Term] +id: PATO:0000906 +name: obsolete f1 sterile +synonym: "F1 infertile" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000907 +name: obsolete f2 fertile +is_obsolete: true + +[Term] +id: PATO:0000908 +name: obsolete f2 sterile +synonym: "F2 infertile" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000909 +name: obsolete intercross fertile +is_obsolete: true + +[Term] +id: PATO:0000910 +name: obsolete intercross sterile +synonym: "intercross infertile" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000911 +name: decreased rate +def: "A rate which is relatively low." [PATO:GVG] +subset: mpath_slim +subset: value_slim +synonym: "slow rate" EXACT [] +is_a: PATO:0000161 ! rate +is_a: PATO:0002302 ! decreased process quality +property_value: RO:0002604 PATO:0000912 + +[Term] +id: PATO:0000912 +name: increased rate +def: "A rate which is relatively high." [PATO:GVG] +subset: mpath_slim +subset: value_slim +synonym: "fast rate" EXACT [] +synonym: "high rate" EXACT [] +is_a: PATO:0000161 ! rate +is_a: PATO:0002304 ! increased process quality +property_value: RO:0002604 PATO:0000911 + +[Term] +id: PATO:0000913 +name: obsolete qualitative value +is_obsolete: true + +[Term] +id: PATO:0000914 +name: obsolete continuant +is_obsolete: true + +[Term] +id: PATO:0000915 +name: thickness +def: "A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0000916 +name: obsolete absolute thickness +is_obsolete: true + +[Term] +id: PATO:0000917 +name: obsolete relative thickness +is_obsolete: true + +[Term] +id: PATO:0000918 +name: volume +def: "A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies." [PATOC:GVG] +subset: attribute_slim +subset: mpath_slim +subset: scalar_slim +is_a: PATO:0001710 ! 3-D extent + +[Term] +id: PATO:0000919 +name: obsolete absolute volume +is_obsolete: true + +[Term] +id: PATO:0000920 +name: obsolete relative volume +is_obsolete: true + +[Term] +id: PATO:0000921 +name: width +def: "A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +synonym: "breadth" RELATED [] +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0000922 +name: obsolete absolute width +is_obsolete: true + +[Term] +id: PATO:0000923 +name: obsolete relative width +is_obsolete: true + +[Term] +id: PATO:0000924 +name: obsolete relative enzyme function +is_obsolete: true + +[Term] +id: PATO:0000925 +name: obsolete absolute enzyme function +is_obsolete: true + +[Term] +id: PATO:0000926 +name: obsolete intercross fertility +is_obsolete: true + +[Term] +id: PATO:0000927 +name: photosensitivity +def: "A quality inhering in a bearer by virtue of the bearer's disposition to being sensitivity to the action of radiant energy." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000085 ! sensitivity toward + +[Term] +id: PATO:0000928 +name: obsolete absolute photosensitivity +is_obsolete: true + +[Term] +id: PATO:0000929 +name: obsolete light intensivity sensitivity +is_obsolete: true + +[Term] +id: PATO:0000930 +name: obsolete light_quality sensitivity +is_obsolete: true + +[Term] +id: PATO:0000931 +name: obsolete blue light sensitivity +is_obsolete: true + +[Term] +id: PATO:0000932 +name: obsolete far red light sensitivity +is_obsolete: true + +[Term] +id: PATO:0000933 +name: obsolete red light sensitivity +is_obsolete: true + +[Term] +id: PATO:0000934 +name: obsolete u v light sensitivity +is_obsolete: true + +[Term] +id: PATO:0000935 +name: obsolete relative photosensitivity +is_obsolete: true + +[Term] +id: PATO:0000936 +name: truncated +def: "A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly by having or as if having an end or point cut off." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +synonym: "truncate" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000937 +name: disorganized +def: "A structural quality inhering in a bearer by virtue of the bearer's lacking organisation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002264 ! organization quality +disjoint_from: PATO:0000938 ! organized +property_value: RO:0002604 PATO:0000938 + +[Term] +id: PATO:0000938 +name: organized +def: "A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002264 ! organization quality +property_value: RO:0002604 PATO:0000937 + +[Term] +id: PATO:0000939 +name: obsolete regular shape +subset: mpath_slim +is_obsolete: true + +[Term] +id: PATO:0000940 +name: obsolete irregular shape +subset: mpath_slim +is_obsolete: true + +[Term] +id: PATO:0000941 +name: vacuolated +def: "A structural quality inhering in a cytoplasm that contains fluid filled cavities." [PATOC:mh] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0002014 ! structure, cavities + +[Term] +id: PATO:0000944 +name: sharpness +def: "A shape quality inhering in a bearer by virtue of the bearer's having a sharp or tapered end or point." [PATOC:GVG] +subset: attribute_slim +subset: cell_quality +synonym: "apiculate" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000945 +name: epinastic +def: "A shape quality inhering in a bearer by virtue of the bearer's exhibiting a downward bending of its leaves or other plant parts." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000946 +name: oblong +def: "A shape quality inhering in a bearer by virtue of the bearer's having a somewhat elongated form with approximately parallel sides." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0002006 ! 2-D shape + +[Term] +id: PATO:0000947 +name: elliptic +def: "A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "ellipse-shaped" EXACT [] +synonym: "ellipsoid" EXACT [] +synonym: "elliptical" EXACT [] +synonym: "oval" RELATED [] +synonym: "ovoid" RELATED [] +is_a: PATO:0002318 ! superelliptic + +[Term] +id: PATO:0000948 +name: heart shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having a sinus or rounded lobe at the base." [PATOC:GVG] +comment: Having the shape of heart. +subset: cell_quality +subset: value_slim +synonym: "cordate" EXACT [] +synonym: "cordiform" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0000949 +name: fasciated +def: "A shape quality inhering in a bearer by virtue of the bearer's being abnormally flattened or coalesced." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000950 +name: grey +def: "A color between white and black colors." [http://en.wikipedia.org/wiki/Grey] +subset: mpath_slim +subset: value_slim +synonym: "plumbeous" RELATED [] +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000951 +name: purple +def: "A color that falls about midway between red and blue in hue." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000952 +name: brown +def: "A color consisting of dark orange, red, of very low intensity." [Wikipedia:http\://en.wikipedia.org/wiki/Brown] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000953 +name: orange +def: "A color hue with high-medium wavelength that of that portion of the visible spectrum lying between red and yellow, evoked in the human observer by radiant energy with wavelengths of approximately 585 to 620 nanometers." [Wikipedia:http\://en.wikipedia.org/wiki/Orange] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000954 +name: pink +def: "Red color having medium to high brightness and low to moderate saturation." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000322 ! red + +[Term] +id: PATO:0000955 +name: fertile +def: "A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000274 ! fertility +disjoint_from: PATO:0000956 ! sterile +property_value: RO:0002604 PATO:0000956 + +[Term] +id: PATO:0000956 +name: sterile +def: "A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000274 ! fertility +property_value: RO:0002604 PATO:0000955 + +[Term] +id: PATO:0000957 +name: opacity +def: "An optical quality which obtains by virtue of the ability of the bearer to absorb visible light." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0000958 +name: obsolete opacity value +is_obsolete: true + +[Term] +id: PATO:0000959 +name: obsolete relative opacity +is_obsolete: true + +[Term] +id: PATO:0000960 +name: obsolete absolute opacity +is_obsolete: true + +[Term] +id: PATO:0000961 +name: obsolete relative opacity value +is_obsolete: true + +[Term] +id: PATO:0000962 +name: obsolete absolute opacity value +is_obsolete: true + +[Term] +id: PATO:0000963 +name: opaque +def: "A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "clouding" RELATED [] +synonym: "cloudy" RELATED [] +synonym: "non-transparent" EXACT [] +is_a: PATO:0000957 ! opacity +property_value: RO:0002604 PATO:0000964 + +[Term] +id: PATO:0000964 +name: transparent +def: "A optical quality inhering in a bearer by virtue of the bearer's lacking opacity." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "clear" EXACT [] +synonym: "hyaline" EXACT [] +is_a: PATO:0000957 ! opacity +property_value: RO:0002604 PATO:0000963 + +[Term] +id: PATO:0000965 +name: symmetry +def: "A pattern quality of inhering in a bearer by virtue of the correspondence in size, shape, and relative position of the bearer's parts on opposite sides of a dividing line or median plane or about a center or axis." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0000966 +name: obsolete symmetry value +is_obsolete: true + +[Term] +id: PATO:0000967 +name: undulate +alt_id: PATO:0001610 +alt_id: PATO:0001939 +def: "A shape quality inhering in a bearer by virtue of the bearer's having a sinuate margin and rippled surface." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "rippled" RELATED [] +synonym: "sinuate" RELATED [] +synonym: "undulated" EXACT [] +synonym: "undulating" EXACT [] +synonym: "waved" EXACT [] +synonym: "wavy" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000968 +name: obsolete albino value +is_obsolete: true + +[Term] +id: PATO:0000969 +name: dwarf-like +def: "A size quality inhering in a bearer by virtue of the bearer's being abnormally small." [Answers.com:Answers.com] +subset: value_slim +synonym: "dwarfed" EXACT [] +is_a: PATO:0000587 ! decreased size + +[Term] +id: PATO:0000970 +name: permeability +def: "A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion)." [Biology-online:Biology-online] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000971 +name: obsolete absolute permeability +is_obsolete: true + +[Term] +id: PATO:0000972 +name: obsolete relative permeability +is_obsolete: true + +[Term] +id: PATO:0000973 +name: porosity +def: "A permeability quality inhering in a bearer by virtue of the bearer's disposition to admit the passage of gas or liquid through pores or interstices." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000970 ! permeability + +[Term] +id: PATO:0000974 +name: obsolete relative porosity +is_obsolete: true + +[Term] +id: PATO:0000975 +name: obsolete absolute porosity +is_obsolete: true + +[Term] +id: PATO:0000976 +name: obsolete permeability value +is_obsolete: true + +[Term] +id: PATO:0000977 +name: obsolete absolute permeability value +is_obsolete: true + +[Term] +id: PATO:0000978 +name: obsolete relative permeability value +is_obsolete: true + +[Term] +id: PATO:0000979 +name: obsolete porosity value +is_obsolete: true + +[Term] +id: PATO:0000980 +name: obsolete absolute porosity value +is_obsolete: true + +[Term] +id: PATO:0000981 +name: obsolete relative porosity value +is_obsolete: true + +[Term] +id: PATO:0000982 +name: permeable +def: "A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion)." [Biology-online:Biology-online] +subset: disposition_slim +subset: value_slim +synonym: "porous" RELATED [] +is_a: PATO:0000970 ! permeability +disjoint_from: PATO:0000983 ! impermeable +property_value: RO:0002604 PATO:0000983 + +[Term] +id: PATO:0000983 +name: impermeable +def: "A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion)." [Biology-online:Biology-online] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000970 ! permeability +property_value: RO:0002604 PATO:0000982 + +[Term] +id: PATO:0000984 +name: porous +def: "A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000973 ! porosity +disjoint_from: PATO:0000985 ! non-porous +property_value: RO:0002604 PATO:0000985 + +[Term] +id: PATO:0000985 +name: non-porous +def: "A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000973 ! porosity +property_value: RO:0002604 PATO:0000984 + +[Term] +id: PATO:0000986 +name: obsolete absolute consistency +is_obsolete: true + +[Term] +id: PATO:0000987 +name: obsolete relative consistency +is_obsolete: true + +[Term] +id: PATO:0000988 +name: obsolete relative consistency value +is_obsolete: true + +[Term] +id: PATO:0000989 +name: obsolete absolute consistency value +is_obsolete: true + +[Term] +id: PATO:0000990 +name: obsolete consistent +is_obsolete: true + +[Term] +id: PATO:0000991 +name: obsolete inconsistent +is_obsolete: true + +[Term] +id: PATO:0000992 +name: viscosity +def: "A physical quality of a liquid inhering in a bearer by virtue of the bearer's disposition to internal resistance to flow." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001548 ! quality of a liquid + +[Term] +id: PATO:0000993 +name: obsolete relative viscosity +is_obsolete: true + +[Term] +id: PATO:0000994 +name: obsolete absolute viscosity +is_obsolete: true + +[Term] +id: PATO:0000995 +name: obsolete viscosity value +is_obsolete: true + +[Term] +id: PATO:0000996 +name: obsolete absolute viscosity value +is_obsolete: true + +[Term] +id: PATO:0000997 +name: obsolete relative viscosity value +is_obsolete: true + +[Term] +id: PATO:0000998 +name: viscous +def: "A viscosity quality inhering in a bearer by virtue of the bearer's having viscosity." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000992 ! viscosity + +[Term] +id: PATO:0000999 +name: alternation +def: "A quality of a single process inhering in a bearer by virtue of the bearer's successive change from one thing or state to another and back again." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000057 ! occurrence + +[Term] +id: PATO:0001000 +name: obsolete relative alternation +is_obsolete: true + +[Term] +id: PATO:0001001 +name: obsolete absolute alternation +is_obsolete: true + +[Term] +id: PATO:0001002 +name: obsolete alternation value +is_obsolete: true + +[Term] +id: PATO:0001003 +name: obsolete relative alternation value +is_obsolete: true + +[Term] +id: PATO:0001004 +name: obsolete absolute alternation value +is_obsolete: true + +[Term] +id: PATO:0001005 +name: latency +def: "A time quality inhering in a bearer by virtue of the time it elapses for the bearer to respond to a stimulus." [PATOC:GVG] +comment: This class is a candidate for obsoletion. The definition is not clear, and the placement under "delayed" is not consistent with the definition. +subset: value_slim +is_a: PATO:0000502 ! delayed + +[Term] +id: PATO:0001006 +name: obsolete absolute latency +is_obsolete: true + +[Term] +id: PATO:0001007 +name: obsolete relative latency +is_obsolete: true + +[Term] +id: PATO:0001008 +name: obsolete absolute latency value +is_obsolete: true + +[Term] +id: PATO:0001009 +name: obsolete relative latency value +is_obsolete: true + +[Term] +id: PATO:0001010 +name: obsolete relative intensity +is_obsolete: true + +[Term] +id: PATO:0001011 +name: obsolete absolute intensity +is_obsolete: true + +[Term] +id: PATO:0001012 +name: obsolete relative intensity value +is_obsolete: true + +[Term] +id: PATO:0001013 +name: obsolete absolute intensity value +is_obsolete: true + +[Term] +id: PATO:0001014 +name: obsolete absolute occurence +is_obsolete: true + +[Term] +id: PATO:0001015 +name: obsolete relative occurence +is_obsolete: true + +[Term] +id: PATO:0001016 +name: obsolete absolute occurence value +is_obsolete: true + +[Term] +id: PATO:0001017 +name: obsolete relative occurence value +is_obsolete: true + +[Term] +id: PATO:0001018 +name: physical quality +alt_id: PATO:0002079 +def: "A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities." [PATOC:GVG] +subset: attribute_slim +synonym: "relational physical quality" EXACT [] +xref: Wikipedia:Physical_property +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001019 +name: mass density +def: "A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +synonym: "density" RELATED [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001020 +name: damage +def: "A structural quality inhering in a bearer by virtue of whether the bearer has been harmed or injured or spoiled." [WordNet:WordNet] +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001021 +name: energy +def: "A physical quality inhering in a bearer by virtue of the bearer's capacity to do work." [Wikipedia:http\://en.wikipedia.org/wiki/Energy] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001022 +name: impulse +def: "A physical quality inhering in a bearer by virtue of the amount of momentum caused a certain force will produce over time." [url:http\://www.wikipremed.com/home_resources/010104_momentum_concepts.pdf] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001023 +name: momentum +def: "A physical quality inhering in a bearer by virtue of the bearer's velocity multiplied by its mass." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001906 ! movement quality + +[Term] +id: PATO:0001024 +name: power +def: "A physical quality inhering in a bearer by virtue of the bearer's rate of doing work." [Wikipedia:http\://en.wikipedia.org/wiki/Power] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001025 +name: pressure +def: "A physical quality that inheres in a bearer by virtue of the bearer's amount of force per unit area it exerts." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001026 +name: work +def: "A physical quality which is equal to the energy transferred by a force to a moving object." [Wikipedia:http\://en.wikipedia.org/wiki/Work] +subset: attribute_slim +synonym: "W" EXACT [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001027 +name: obsolete physical quantity +is_obsolete: true + +[Term] +id: PATO:0001028 +name: acceleration +def: "A physical quality inhering in a bearer by virtue of the rate of change of the bearer's velocity in either speed or direction." [Wikipedia:http\://en.wikipedia.org/wiki/Acceleration] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001906 ! movement quality + +[Term] +id: PATO:0001029 +name: efficiency +def: "A physical quality inhering in a bearer by virtue of ratio of the bearer's output to the bearer's input." [WordNet:WordNet] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001030 +name: flux +def: "A physical quality that exists by virtue of the rate of flow of the bearer across a given surface." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001906 ! movement quality + +[Term] +id: PATO:0001031 +name: elasticity +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to recover its size and shape after deformation in any way." [merriam-webster:merriam-webster] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001033 +name: obsolete stiffness +is_obsolete: true + +[Term] +id: PATO:0001034 +name: strain +def: "A physical quality inhering in a bearer by virtue of the relative change in the bearer's length or the bearer's volume when being stretched or squashed." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001035 +name: force +def: "A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum." [thesaurus.maths:thesaurus.maths] +subset: attribute_slim +subset: scalar_slim +synonym: "force amplitude" EXACT [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001036 +name: obsolete relative life span +is_obsolete: true + +[Term] +id: PATO:0001037 +name: obsolete absolute life span +is_obsolete: true + +[Term] +id: PATO:0001038 +name: obsolete ratio +is_obsolete: true + +[Term] +id: PATO:0001039 +name: obsolete absolute ratio +is_obsolete: true + +[Term] +id: PATO:0001040 +name: obsolete relative ratio +is_obsolete: true + +[Term] +id: PATO:0001041 +name: obsolete relative amplitude +is_obsolete: true + +[Term] +id: PATO:0001042 +name: obsolete absolute amplitude +is_obsolete: true + +[Term] +id: PATO:0001043 +name: susceptibility toward +def: "A quality inhering in an entity by virtue of the bearer's propensity to resist an external stimulus." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "susceptibility" EXACT [] +is_a: PATO:0000085 ! sensitivity toward +property_value: RO:0002604 PATO:0001046 + +[Term] +id: PATO:0001044 +name: obsolete absolute power +is_obsolete: true + +[Term] +id: PATO:0001045 +name: obsolete relative power +is_obsolete: true + +[Term] +id: PATO:0001046 +name: resistance to +def: "A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +subset: scalar_slim +synonym: "resistance" EXACT [] +is_a: PATO:0001995 ! organismal quality +property_value: RO:0002604 PATO:0001043 + +[Term] +id: PATO:0001047 +name: obsolete absolute resistance +is_obsolete: true + +[Term] +id: PATO:0001048 +name: obsolete relative resistance +is_obsolete: true + +[Term] +id: PATO:0001049 +name: obsolete absolute susceptibility +is_obsolete: true + +[Term] +id: PATO:0001050 +name: obsolete relative susceptibility +is_obsolete: true + +[Term] +id: PATO:0001051 +name: acute angle to +def: "An angle which is less than 90 degrees." [thesaurus.maths:thesaurus.maths] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001052 +name: obtuse angle to +def: "An angle which is between 90 degrees and 180 degrees to another entity." [thesaurus.maths:thesaurus.maths] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001053 +name: convex angle to +def: "An angle which is less than 180 degrees to another entity." [maths.org:maths.org] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001054 +name: internal angle +def: "A convex angle that is inside two adjacent sides of a polygon." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001053 ! convex angle to + +[Term] +id: PATO:0001055 +name: reflex angle to +def: "An angular placement quality inhering in a bearer by virtue of the bearer's placement at an angle that is greater than 180 degrees but less than 360 degrees to another entity." [thesaurus.maths:thesaurus.maths] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001056 +name: obsolete number +is_obsolete: true + +[Term] +id: PATO:0001057 +name: obsolete relative acceleration +is_obsolete: true + +[Term] +id: PATO:0001058 +name: obsolete absolute acceleration +is_obsolete: true + +[Term] +id: PATO:0001059 +name: obsolete relative efficiency +is_obsolete: true + +[Term] +id: PATO:0001060 +name: obsolete absolute efficiency +is_obsolete: true + +[Term] +id: PATO:0001061 +name: obsolete relative elasticity +is_obsolete: true + +[Term] +id: PATO:0001062 +name: obsolete absolute elasticity +is_obsolete: true + +[Term] +id: PATO:0001063 +name: obsolete relative flux +is_obsolete: true + +[Term] +id: PATO:0001064 +name: obsolete absolute flux +is_obsolete: true + +[Term] +id: PATO:0001065 +name: obsolete relative stiffness +is_obsolete: true + +[Term] +id: PATO:0001066 +name: obsolete absolute stiffness +is_obsolete: true + +[Term] +id: PATO:0001067 +name: obsolete absolute strain +is_obsolete: true + +[Term] +id: PATO:0001068 +name: obsolete relative strain +is_obsolete: true + +[Term] +id: PATO:0001069 +name: obsolete relative density +is_obsolete: true + +[Term] +id: PATO:0001070 +name: obsolete absolute density +is_obsolete: true + +[Term] +id: PATO:0001071 +name: obsolete relative energy +is_obsolete: true + +[Term] +id: PATO:0001072 +name: obsolete absolute energy +is_obsolete: true + +[Term] +id: PATO:0001073 +name: obsolete relative impulse +is_obsolete: true + +[Term] +id: PATO:0001074 +name: obsolete absolute impulse +is_obsolete: true + +[Term] +id: PATO:0001075 +name: obsolete absolute momentum +is_obsolete: true + +[Term] +id: PATO:0001076 +name: obsolete relative momentum +is_obsolete: true + +[Term] +id: PATO:0001077 +name: obsolete absolute pressure +is_obsolete: true + +[Term] +id: PATO:0001078 +name: obsolete relative pressure +is_obsolete: true + +[Term] +id: PATO:0001079 +name: obsolete absolute work +is_obsolete: true + +[Term] +id: PATO:0001080 +name: obsolete relative work +is_obsolete: true + +[Term] +id: PATO:0001081 +name: obsolete physical measure value +is_obsolete: true + +[Term] +id: PATO:0001082 +name: obsolete damage value +is_obsolete: true + +[Term] +id: PATO:0001083 +name: obsolete acceleration value +is_obsolete: true + +[Term] +id: PATO:0001084 +name: obsolete relative acceleration value +is_obsolete: true + +[Term] +id: PATO:0001085 +name: obsolete absolute acceleration value +is_obsolete: true + +[Term] +id: PATO:0001086 +name: obsolete efficiency value +is_obsolete: true + +[Term] +id: PATO:0001087 +name: obsolete relative efficiency value +is_obsolete: true + +[Term] +id: PATO:0001088 +name: obsolete absolute efficiency value +is_obsolete: true + +[Term] +id: PATO:0001089 +name: obsolete elasticity value +is_obsolete: true + +[Term] +id: PATO:0001090 +name: obsolete absolute elasticity value +is_obsolete: true + +[Term] +id: PATO:0001091 +name: obsolete relative elasticity value +is_obsolete: true + +[Term] +id: PATO:0001092 +name: obsolete flux value +is_obsolete: true + +[Term] +id: PATO:0001093 +name: obsolete relative flux value +is_obsolete: true + +[Term] +id: PATO:0001094 +name: obsolete absolute flux value +is_obsolete: true + +[Term] +id: PATO:0001095 +name: obsolete force value +is_obsolete: true + +[Term] +id: PATO:0001096 +name: obsolete absolute force value +is_obsolete: true + +[Term] +id: PATO:0001097 +name: obsolete relative force value +is_obsolete: true + +[Term] +id: PATO:0001098 +name: obsolete absolute force +is_obsolete: true + +[Term] +id: PATO:0001099 +name: obsolete relative force +is_obsolete: true + +[Term] +id: PATO:0001100 +name: obsolete position value +is_obsolete: true + +[Term] +id: PATO:0001101 +name: obsolete stiffness value +is_obsolete: true + +[Term] +id: PATO:0001102 +name: obsolete absolute stiffness value +is_obsolete: true + +[Term] +id: PATO:0001103 +name: obsolete relative stiffness value +is_obsolete: true + +[Term] +id: PATO:0001104 +name: obsolete strain value +is_obsolete: true + +[Term] +id: PATO:0001105 +name: obsolete absolute strain value +is_obsolete: true + +[Term] +id: PATO:0001106 +name: obsolete relative strain value +is_obsolete: true + +[Term] +id: PATO:0001107 +name: obsolete density value +is_obsolete: true + +[Term] +id: PATO:0001108 +name: obsolete relative amplitude value +is_obsolete: true + +[Term] +id: PATO:0001109 +name: obsolete absolute amplitude value +is_obsolete: true + +[Term] +id: PATO:0001110 +name: obsolete absolute density value +is_obsolete: true + +[Term] +id: PATO:0001111 +name: obsolete relative density value +is_obsolete: true + +[Term] +id: PATO:0001112 +name: obsolete energy value +is_obsolete: true + +[Term] +id: PATO:0001113 +name: obsolete absolute energy value +is_obsolete: true + +[Term] +id: PATO:0001114 +name: obsolete relative energy value +is_obsolete: true + +[Term] +id: PATO:0001115 +name: obsolete impulse value +is_obsolete: true + +[Term] +id: PATO:0001116 +name: obsolete relative impulse value +is_obsolete: true + +[Term] +id: PATO:0001117 +name: obsolete absolute impulse value +is_obsolete: true + +[Term] +id: PATO:0001118 +name: obsolete momentum value +is_obsolete: true + +[Term] +id: PATO:0001119 +name: obsolete absolute momentum value +is_obsolete: true + +[Term] +id: PATO:0001120 +name: obsolete relative momentum value +is_obsolete: true + +[Term] +id: PATO:0001121 +name: obsolete power value +is_obsolete: true + +[Term] +id: PATO:0001122 +name: obsolete absolute power value +is_obsolete: true + +[Term] +id: PATO:0001123 +name: obsolete relative power value +is_obsolete: true + +[Term] +id: PATO:0001124 +name: obsolete pressure value +is_obsolete: true + +[Term] +id: PATO:0001125 +name: obsolete absolute pressure value +is_obsolete: true + +[Term] +id: PATO:0001126 +name: obsolete relative pressure value +is_obsolete: true + +[Term] +id: PATO:0001127 +name: obsolete work value +is_obsolete: true + +[Term] +id: PATO:0001128 +name: obsolete absolute work value +is_obsolete: true + +[Term] +id: PATO:0001129 +name: obsolete relative work value +is_obsolete: true + +[Term] +id: PATO:0001130 +name: obsolete ratio value +is_obsolete: true + +[Term] +id: PATO:0001131 +name: obsolete absolute ratio value +is_obsolete: true + +[Term] +id: PATO:0001132 +name: obsolete relative ratio value +is_obsolete: true + +[Term] +id: PATO:0001133 +name: obsolete immunoglobulin concentration +is_obsolete: true + +[Term] +id: PATO:0001134 +name: obsolete ig a concentration +is_obsolete: true + +[Term] +id: PATO:0001135 +name: obsolete ig d concentration +is_obsolete: true + +[Term] +id: PATO:0001136 +name: obsolete ig e concentration +is_obsolete: true + +[Term] +id: PATO:0001137 +name: obsolete ig g concentration +is_obsolete: true + +[Term] +id: PATO:0001138 +name: obsolete ig m concentration +is_obsolete: true + +[Term] +id: PATO:0001139 +name: obsolete urine glucose composition +is_obsolete: true + +[Term] +id: PATO:0001140 +name: obsolete immunoglobulin concentration value +is_obsolete: true + +[Term] +id: PATO:0001141 +name: obsolete ig a concentration value +is_obsolete: true + +[Term] +id: PATO:0001142 +name: obsolete ig d concentration value +is_obsolete: true + +[Term] +id: PATO:0001143 +name: obsolete ig e concentration value +is_obsolete: true + +[Term] +id: PATO:0001144 +name: obsolete ig g concentration value +is_obsolete: true + +[Term] +id: PATO:0001145 +name: obsolete ig m concentration value +is_obsolete: true + +[Term] +id: PATO:0001146 +name: obsolete resistance value +is_obsolete: true + +[Term] +id: PATO:0001147 +name: obsolete absolute resistance value +is_obsolete: true + +[Term] +id: PATO:0001148 +name: obsolete relative resistance value +is_obsolete: true + +[Term] +id: PATO:0001149 +name: obsolete susceptibility value +is_obsolete: true + +[Term] +id: PATO:0001150 +name: obsolete absolute susceptibility value +is_obsolete: true + +[Term] +id: PATO:0001151 +name: obsolete relative susceptibility value +is_obsolete: true + +[Term] +id: PATO:0001152 +name: susceptible toward +def: "A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "susceptible" EXACT [] +is_a: PATO:0001043 ! susceptibility toward +disjoint_from: PATO:0001153 ! insusceptible toward +property_value: RO:0002604 PATO:0001153 + +[Term] +id: PATO:0001153 +name: insusceptible toward +def: "A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus." [PATO:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "insusceptible" EXACT [] +is_a: PATO:0001043 ! susceptibility toward +property_value: RO:0002604 PATO:0001152 + +[Term] +id: PATO:0001154 +name: elongated +def: "A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000052 ! shape +property_value: RO:0002604 PATO:0002364 + +[Term] +id: PATO:0001155 +name: obsolete absolute concentration +is_obsolete: true + +[Term] +id: PATO:0001156 +name: obsolete relative concentration +is_obsolete: true + +[Term] +id: PATO:0001157 +name: obsolete absolute concentration value +is_obsolete: true + +[Term] +id: PATO:0001158 +name: obsolete relative concentration value +is_obsolete: true + +[Term] +id: PATO:0001159 +name: concentrated +def: "A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0000033 ! concentration of + +[Term] +id: PATO:0001160 +name: obsolete unconcentrated +is_obsolete: true + +[Term] +id: PATO:0001161 +name: diluted +def: "A concentration which relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0000033 ! concentration of + +[Term] +id: PATO:0001162 +name: increased concentration +def: "A concentration which is higher relative to the normal or average." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "high concentration" EXACT [] +is_a: PATO:0001159 ! concentrated +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001163 + +[Term] +id: PATO:0001163 +name: decreased concentration +def: "A concentration which is lower relative to the normal or average." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "low concentration" EXACT [] +is_a: PATO:0001159 ! concentrated +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001162 + +[Term] +id: PATO:0001164 +name: dense +def: "A physical quality which inheres in a bearer by virtue of the bearer's exhibiting density." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001019 ! mass density + +[Term] +id: PATO:0001165 +name: obsolete urine enzyme composition value +is_obsolete: true + +[Term] +id: PATO:0001166 +name: obsolete urine enzyme composition +is_obsolete: true + +[Term] +id: PATO:0001167 +name: damaged +def: "A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001020 ! damage +disjoint_from: PATO:0001168 ! undamaged +property_value: RO:0002604 PATO:0001168 + +[Term] +id: PATO:0001168 +name: undamaged +def: "A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001020 ! damage +property_value: RO:0002604 PATO:0001167 + +[Term] +id: PATO:0001170 +name: obsolete numerical value +is_obsolete: true + +[Term] +id: PATO:0001171 +name: elastic +def: "An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way." [merriam-webster:merriam-webster] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001031 ! elasticity +disjoint_from: PATO:0001172 ! inelastic +property_value: RO:0002604 PATO:0001172 + +[Term] +id: PATO:0001172 +name: inelastic +def: "An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way." [merriam-webster:merriam-webster] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001031 ! elasticity +property_value: RO:0002604 PATO:0001171 + +[Term] +id: PATO:0001173 +name: obsolete urine glucose composition value +is_obsolete: true + +[Term] +id: PATO:0001174 +name: obsolete urine composition +is_obsolete: true + +[Term] +id: PATO:0001175 +name: obsolete urine composition +is_obsolete: true + +[Term] +id: PATO:0001176 +name: obsolete deaf +is_obsolete: true + +[Term] +id: PATO:0001177 +name: obsolete blind +is_obsolete: true + +[Term] +id: PATO:0001178 +name: resistant to +def: "A resistance quality inhering in a bearer by virtue of the bearer's resistance to a stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "resistant" EXACT [] +is_a: PATO:0001046 ! resistance to + +[Term] +id: PATO:0001179 +name: obsolete immune +is_obsolete: true + +[Term] +id: PATO:0001180 +name: obsolete relative response +is_obsolete: true + +[Term] +id: PATO:0001181 +name: obsolete absolute response +is_obsolete: true + +[Term] +id: PATO:0001182 +name: obsolete relative response +is_obsolete: true + +[Term] +id: PATO:0001183 +name: obsolete absolute response value +is_obsolete: true + +[Term] +id: PATO:0001184 +name: obsolete maturity value +is_obsolete: true + +[Term] +id: PATO:0001185 +name: larval +def: "A maturity quality inhering in a bearer by virtue of the bearer's indirect development, undergoing metamorphosis." [Wikipedia:http\://en.wikipedia.org/wiki/Larval] +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001186 +name: prepubescent +def: "A maturity quality inhering in a bearer by virtue of the bearer's being at the age immediately before puberty." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001187 +name: pupal +def: "A maturity quality inhering in a insect by virtue of the bearer's being in the chrysalis (cocoon) or post larval stage." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001188 +name: prepupal +def: "A maturity quality inhering in a bearer by virtue of the bearer's being in an inactive stage in the development of some insects, between the larval and the pupal stages." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001189 +name: adolescent +def: "A maturity quality inhering in a bearer by virtue of the bearer's being between the onset of puberty and maturity." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001190 +name: juvenile +def: "A maturity quality inhering in a bearer by virtue the bearer's being not fully grown or developed." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001191 +name: medial to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the middle relative to another entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001192 +name: hyperresponsive to +def: "A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "hyperresponsive" EXACT [] +synonym: "increased responsivity" EXACT [] +is_a: PATO:0000487 ! responsive to +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001194 + +[Term] +id: PATO:0001193 +name: lateral to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the side relative to another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "lateral" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001194 +name: hyporesponsive to +def: "A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "decreased responsivity" EXACT [] +synonym: "hyporesponsive" EXACT [] +is_a: PATO:0000487 ! responsive to +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001192 + +[Term] +id: PATO:0001195 +name: proximal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located more centrally than another entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001196 +name: ventral to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the abdomen of an organism relative to another entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "anterior_ to" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001197 +name: obsolete modified direction +is_obsolete: true + +[Term] +id: PATO:0001198 +name: obsolete unmodified direction +is_obsolete: true + +[Term] +id: PATO:0001199 +name: linear +def: "A shape quality inhering in a bearer by virtue of the bearer's being narrow, with the two opposite margins parallel." [ISBN:0881923214] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001200 +name: T-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter T." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0001890 ! tripartite + +[Term] +id: PATO:0001201 +name: Y-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter Y." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0001890 ! tripartite + +[Term] +id: PATO:0001204 +name: obsolete not enlarged +subset: mpath_slim +is_obsolete: true + +[Term] +id: PATO:0001205 +name: dentated +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having toothlike projections in the margin." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "dentate" EXACT [] +synonym: "toothed" EXACT [] +is_a: PATO:0001206 ! serrated + +[Term] +id: PATO:0001206 +name: serrated +def: "A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex." [ISBN:0881923214] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "serrate" EXACT [] +is_a: PATO:0001976 ! serration +property_value: RO:0002604 PATO:0001975 + +[Term] +id: PATO:0001207 +name: obsolete absolute compatability +is_obsolete: true + +[Term] +id: PATO:0001208 +name: odorless +def: "An odor quality inhering in a bearer by virtue of the bearer's lacking odour." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000058 ! odor +disjoint_from: PATO:0001331 ! odorous + +[Term] +id: PATO:0001209 +name: obsolete absolute function +is_obsolete: true + +[Term] +id: PATO:0001210 +name: obsolete plane_angle_quantity +is_obsolete: true + +[Term] +id: PATO:0001211 +name: obsolete solid_angle_quantity +is_obsolete: true + +[Term] +id: PATO:0001212 +name: obsolete length_unit +is_obsolete: true + +[Term] +id: PATO:0001213 +name: obsolete mass_unit +is_obsolete: true + +[Term] +id: PATO:0001214 +name: obsolete temparature_unit +is_obsolete: true + +[Term] +id: PATO:0001215 +name: obsolete time_unit +is_obsolete: true + +[Term] +id: PATO:0001216 +name: obsolete volume_unit +is_obsolete: true + +[Term] +id: PATO:0001217 +name: obsolete energy_unit +is_obsolete: true + +[Term] +id: PATO:0001218 +name: obsolete substance_unit +is_obsolete: true + +[Term] +id: PATO:0001219 +name: obsolete area_unit +is_obsolete: true + +[Term] +id: PATO:0001220 +name: obsolete angle_unit +is_obsolete: true + +[Term] +id: PATO:0001221 +name: obsolete plane_angle_unit +is_obsolete: true + +[Term] +id: PATO:0001222 +name: obsolete solid_angle_unit +is_obsolete: true + +[Term] +id: PATO:0001223 +name: obsolete quantitative value +is_obsolete: true + +[Term] +id: PATO:0001224 +name: obsolete real number +is_obsolete: true + +[Term] +id: PATO:0001225 +name: obsolete relational number +is_obsolete: true + +[Term] +id: PATO:0001227 +name: variant +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change." [Dictionary:http\://dictionary.reference.com/] +subset: relational_slim +subset: value_slim +synonym: "variable" EXACT [] +is_a: PATO:0001303 ! variability +property_value: RO:0002604 PATO:0000438 + +[Term] +id: PATO:0001228 +name: obsolete dull +is_obsolete: true + +[Term] +id: PATO:0001229 +name: high saturation +def: "A color saturation which is of high purity." [PATOC:MAH] +subset: value_slim +synonym: "bright" EXACT [] +synonym: "vivid" RELATED [] +is_a: PATO:0000017 ! color saturation +property_value: RO:0002604 PATO:0000328 + +[Term] +id: PATO:0001230 +name: strength +def: "A quality inhering in a bearer by virtue of the bearer's power or force." [thefreedictionary.com:thefreedictionary.com] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001231 +name: obsolete cold insensitive +is_obsolete: true + +[Term] +id: PATO:0001232 +name: obsolete heat insentive +is_obsolete: true + +[Term] +id: PATO:0001233 +name: dorsal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the back or upper surface of an organism relative to another entity." [PATOC:nw] +subset: relational_slim +subset: value_slim +synonym: "dorsal" EXACT [] +synonym: "posterior_to (human torso)" EXACT [] +synonym: "superior_to (human head)" EXACT [] +is_a: PATO:0000140 ! position +property_value: RO:0002604 PATO:0001234 + +[Term] +id: PATO:0001234 +name: distal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "distal" EXACT [] +is_a: PATO:0000140 ! position +property_value: RO:0002604 PATO:0001233 + +[Term] +id: PATO:0001235 +name: obsolete strength value +is_obsolete: true + +[Term] +id: PATO:0001236 +name: process quality +alt_id: PATO:0001239 +alt_id: PATO:0001240 +def: "A quality which inheres in an process." [PATOC:GVG] +comment: See comments of relational quality of a physical entity. +synonym: "quality of a process" EXACT [] +synonym: "quality of occurrent" EXACT [] +synonym: "quality of process" EXACT [] +synonym: "relational quality of occurrent" EXACT [] +is_a: PATO:0000001 ! quality +disjoint_from: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001241 +name: physical object quality +alt_id: PATO:0001237 +alt_id: PATO:0001238 +def: "A quality which inheres in a continuant." [PATOC:GVG] +comment: Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles. +synonym: "monadic quality of a continuant" EXACT [] +synonym: "monadic quality of an object" NARROW [] +synonym: "monadic quality of continuant" NARROW [] +synonym: "multiply inhering quality of a physical entity" EXACT [] +synonym: "quality of a continuant" EXACT [] +synonym: "quality of a single physical entity" EXACT [] +synonym: "quality of an object" EXACT [] +synonym: "quality of continuant" EXACT [] +xref: snap:Quality +is_a: PATO:0000001 ! quality + +[Term] +id: PATO:0001242 +name: wavelength +def: "A physical quality which is equal to the distance between repeating units of a wave pattern." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001243 +name: light blue +def: "A color consisting of blue hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000318 ! blue + +[Term] +id: PATO:0001244 +name: dark blue +def: "A color consisting of blue hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000318 ! blue + +[Term] +id: PATO:0001245 +name: dark brown +def: "A color consisting of brown hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000952 ! brown + +[Term] +id: PATO:0001246 +name: light brown +def: "A color consisting of brown hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000952 ! brown + +[Term] +id: PATO:0001247 +name: light cyan +def: "A color consisting of cyan hue and high brightness." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000319 ! cyan + +[Term] +id: PATO:0001248 +name: dark cyan +def: "A color consisting of cyan hue and low brightness." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000319 ! cyan + +[Term] +id: PATO:0001249 +name: dark green +def: "A color consisting of green hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001250 +name: light green +def: "A color consisting of green hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001251 +name: dark grey +def: "A color consisting of grey color and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000950 ! grey + +[Term] +id: PATO:0001252 +name: light grey +def: "A color consisting of grey color and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000950 ! grey + +[Term] +id: PATO:0001253 +name: light magenta +def: "A color consisting of magenta color and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000321 ! magenta + +[Term] +id: PATO:0001254 +name: dark magenta +def: "A color consisting of magenta with low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000321 ! magenta + +[Term] +id: PATO:0001255 +name: light orange +def: "A color consisting of orange hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000953 ! orange + +[Term] +id: PATO:0001256 +name: dark orange +def: "A color consisting of orange color and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000953 ! orange + +[Term] +id: PATO:0001257 +name: light deep pink +def: "Pink color having high brightness and moderate saturation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000954 ! pink + +[Term] +id: PATO:0001258 +name: deep pink +def: "Pink color having medium brightness and moderate saturation." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000954 ! pink + +[Term] +id: PATO:0001259 +name: dark purple +def: "A color consisting of purple color and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000951 ! purple + +[Term] +id: PATO:0001260 +name: light purple +def: "A color consisting of purple color and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000951 ! purple + +[Term] +id: PATO:0001261 +name: dark red +def: "A color consisting of red hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000322 ! red + +[Term] +id: PATO:0001262 +name: light red +def: "A color consisting of red hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000322 ! red + +[Term] +id: PATO:0001263 +name: dark yellow +def: "A color consisting of yellow hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000324 ! yellow + +[Term] +id: PATO:0001264 +name: light yellow +def: "A color consisting of yellow hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "blond" RELATED [] +is_a: PATO:0000324 ! yellow + +[Term] +id: PATO:0001265 +name: saturated blue +def: "A color consisting of blue hue and high saturation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "bright blue" RELATED [] +is_a: PATO:0000318 ! blue + +[Term] +id: PATO:0001266 +name: desaturated blue +def: "A color consisting of blue hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale blue" EXACT [] +is_a: PATO:0000318 ! blue + +[Term] +id: PATO:0001267 +name: saturated brown +def: "A color consisting of brown hue and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright brown" RELATED [] +is_a: PATO:0000952 ! brown + +[Term] +id: PATO:0001268 +name: desaturated brown +def: "A color consisting of brown hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale brown" EXACT [] +is_a: PATO:0000952 ! brown + +[Term] +id: PATO:0001269 +name: saturated cyan +def: "A color consisting of cyan colour and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright cyan" RELATED [] +is_a: PATO:0000319 ! cyan + +[Term] +id: PATO:0001270 +name: desaturated cyan +def: "A color consisting of cyan colour and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale cyan" EXACT [] +is_a: PATO:0000319 ! cyan + +[Term] +id: PATO:0001271 +name: saturated green +def: "A color consisting of green hue and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright green" RELATED [] +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001272 +name: desaturated green +def: "A color consisting of green hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale green" EXACT [] +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001273 +name: obsolete bright grey +def: "A color consisting of grey color and high saturation." [PATOC:GVG] +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0001274 +name: obsolete pale grey +def: "A color consisting of grey color and low saturation." [PATOC:GVG] +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0001275 +name: saturated magenta +def: "A color consisting of magenta color and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright magenta" RELATED [] +is_a: PATO:0000321 ! magenta + +[Term] +id: PATO:0001276 +name: desaturated magenta +def: "A color consisting of magenta color and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale magenta" EXACT [] +is_a: PATO:0000321 ! magenta + +[Term] +id: PATO:0001277 +name: saturated orange +def: "A color consisting of orange hue and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright orange" RELATED [] +is_a: PATO:0000953 ! orange + +[Term] +id: PATO:0001278 +name: desaturated orange +def: "A color consisting of orange hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale orange" EXACT [] +is_a: PATO:0000953 ! orange + +[Term] +id: PATO:0001280 +name: dark pale pink +alt_id: PATO:0001279 +def: "Pink color having medium brightness and low saturation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "bright pink" RELATED [] +is_a: PATO:0000954 ! pink + +[Term] +id: PATO:0001281 +name: saturated purple +def: "A color consisting of purple color and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright purple" RELATED [] +is_a: PATO:0000951 ! purple + +[Term] +id: PATO:0001282 +name: desaturated purple +def: "A color consisting of purple color and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale purple" EXACT [] +is_a: PATO:0000951 ! purple + +[Term] +id: PATO:0001283 +name: saturated red +def: "A color consisting of red hue and high saturation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "bright red" RELATED [] +is_a: PATO:0000322 ! red + +[Term] +id: PATO:0001284 +name: desaturated red +def: "A color consisting of red hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale red" EXACT [] +is_a: PATO:0000322 ! red + +[Term] +id: PATO:0001285 +name: saturated yellow +def: "A color consisting of yellow hue and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright yellow" RELATED [] +is_a: PATO:0000324 ! yellow + +[Term] +id: PATO:0001286 +name: desaturated yellow +def: "A color consisting of yellow hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale yellow" EXACT [] +is_a: PATO:0000324 ! yellow + +[Term] +id: PATO:0001287 +name: red brown +def: "A color consisting of red and brown hue." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000952 ! brown + +[Term] +id: PATO:0001288 +name: dark red brown +def: "A color consisting of red and brown hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001287 ! red brown + +[Term] +id: PATO:0001289 +name: light red brown +def: "A color consisting of red and brown hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001287 ! red brown + +[Term] +id: PATO:0001290 +name: fluorescent +def: "A fluorescence quality inhering in a bearer by virtue of emitting light during exposure to radiation from an external source." [web:www.thefreedictionary.com/] +subset: value_slim +is_a: PATO:0000018 ! fluorescence + +[Term] +id: PATO:0001291 +name: electromagnetic (EM) radiation quality +def: "A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation." [Wikipedia:http\://en.wikipedia.org/wiki/Electromagnetic_radiation] +subset: attribute_slim +is_a: PATO:0001739 ! radiation quality + +[Term] +id: PATO:0001292 +name: full-spectrum EM radiation quality +def: "An EM radiation quality that is independent of the EM wavelength range." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001291 ! electromagnetic (EM) radiation quality + +[Term] +id: PATO:0001293 +name: absorption quality +def: "A scalar EM radiation quality which obtains by the capacity of the bearer to retain radiation." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001292 ! full-spectrum EM radiation quality + +[Term] +id: PATO:0001294 +name: radiation reflective quality +def: "A scalar EM radiation quality which obtains by the capacity of the bearer to scatter or reflect radiation." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001292 ! full-spectrum EM radiation quality + +[Term] +id: PATO:0001295 +name: albedo +def: "A reflective quality restricted to a particular wavelength." [PATOC:cjm] +comment: Typically used for light, but also applied to full EM spectrum. +subset: attribute_slim +is_a: PATO:0001294 ! radiation reflective quality + +[Term] +id: PATO:0001296 +name: luminous flux +def: "A scalar optical quality which obtains by the magnitude of the light emitted by the bearer." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0001297 +name: reflectivity +def: "A radiation reflective quality inhering in a bearer by virtue of the ratio of the energy of a wave reflected from its surface to the energy possessed by the wave striking the bearer's surface." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001294 ! radiation reflective quality + +[Term] +id: PATO:0001298 +name: phosphorescence +def: "A fluorescence in which the emittence continues after the absorption has ceased." [PATOC:GVG] +subset: relational_slim +is_a: PATO:0000018 ! fluorescence + +[Term] +id: PATO:0001299 +name: radiation emitting quality +def: "A scalar EM radiation quality which obtains by the capacity of the bearer to emit radiation." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001292 ! full-spectrum EM radiation quality + +[Term] +id: PATO:0001300 +name: optical quality +def: "An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001291 ! electromagnetic (EM) radiation quality + +[Term] +id: PATO:0001301 +name: chromatic property +def: "An optical quality that is the mixture, purity or pattern of wavelengths of light perceived by the observer." [PATOC:MAH] +subset: attribute_slim +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0001302 +name: vermilion +def: "A color consisting of red and orange hue with a slight amount of gray." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0001303 +name: variability +def: "A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing." [Dictionary:http\://dictionary.reference.com/] +subset: attribute_slim +synonym: "variability of a physical quality" RELATED [] +is_a: PATO:0000001 ! quality + +[Term] +id: PATO:0001304 +name: variability of temperature +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change." [PATO:GVG] +subset: attribute_slim +is_a: PATO:0001303 ! variability +relationship: towards PATO:0000146 ! temperature + +[Term] +id: PATO:0001305 +name: increased temperature +alt_id: PATO:0000678 +def: "A temperature which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high temperature" EXACT [] +synonym: "hot" EXACT [] +is_a: PATO:0000146 ! temperature +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001306 + +[Term] +id: PATO:0001306 +name: decreased temperature +alt_id: PATO:0000677 +def: "A temperature which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "cold" EXACT [] +synonym: "low temperature" EXACT [] +is_a: PATO:0000146 ! temperature +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001305 + +[Term] +id: PATO:0001307 +name: decreased variability of temperature +def: "A variability of temperature which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low variability of temperature" EXACT [] +is_a: PATO:0001314 ! variant temperature +is_a: PATO:0002301 ! decreased quality +property_value: RO:0002604 PATO:0001308 + +[Term] +id: PATO:0001308 +name: increased variability of temperature +def: "A variability of temperature which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high variability of temperature" EXACT [] +is_a: PATO:0001314 ! variant temperature +is_a: PATO:0002300 ! increased quality +property_value: RO:0002604 PATO:0001307 + +[Term] +id: PATO:0001309 +name: duration +alt_id: PATO:0000081 +def: "A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point." [PATOC:mellybelly] +subset: attribute_slim +subset: hpo_slim +synonym: "period" EXACT [] +synonym: "time" RELATED [] +is_a: PATO:0002062 ! physical quality of a process + +[Term] +id: PATO:0001310 +name: duration of temperature +def: "A duration quality of a process inhering in a bearer by virtue of the bearer's duration of exhibition of thermal energy." [PATOC:GVG] +comment: TODO: obsolete? I don't know what this means. +subset: attribute_slim +is_a: PATO:0001309 ! duration + +[Term] +id: PATO:0001311 +name: decreased duration of temperature +def: "A duration of temperature which is lesser relative to the normal or average enduring or continuing in time." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000499 ! decreased duration +is_a: PATO:0001310 ! duration of temperature +property_value: RO:0002604 PATO:0001312 + +[Term] +id: PATO:0001312 +name: increased duration of temperature +def: "A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time." [PATOC:GVG] +subset: value_slim +synonym: "high duration of temperature" EXACT [] +is_a: PATO:0000498 ! increased duration +is_a: PATO:0001310 ! duration of temperature +property_value: RO:0002604 PATO:0001311 + +[Term] +id: PATO:0001313 +name: invariant temperature +def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature." [PATO:GVG] +subset: relational_slim +is_a: PATO:0001304 ! variability of temperature +property_value: RO:0002604 PATO:0001314 + +[Term] +id: PATO:0001314 +name: variant temperature +def: "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature." [PATO:GVG] +subset: value_slim +is_a: PATO:0001304 ! variability of temperature +property_value: RO:0002604 PATO:0001313 + +[Term] +id: PATO:0001315 +name: mild increased temperature +def: "A temperature which is increased by a low degree." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001305 ! increased temperature + +[Term] +id: PATO:0001316 +name: moderate increased temperature +def: "A temperature which is increased by a medium degree." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001305 ! increased temperature + +[Term] +id: PATO:0001317 +name: severe increased temperature +def: "A temperature which is increased by a high degree." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001305 ! increased temperature + +[Term] +id: PATO:0001318 +name: indiscriminate +def: "A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000189 ! discrimination +disjoint_from: PATO:0001319 ! discriminate +property_value: RO:0002604 PATO:0001319 + +[Term] +id: PATO:0001319 +name: discriminate +def: "A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000189 ! discrimination +property_value: RO:0002604 PATO:0001318 + +[Term] +id: PATO:0001320 +name: pubescent hair +def: "A pilosity quality of being covered with short hairs or soft down." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000454 ! hairy + +[Term] +id: PATO:0001321 +name: right angle to +def: "An angle which is 90 degrees to another entity." [thesaurus.math:thesaurus.math] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001322 +name: straight angle to +def: "An angle which is 180 degrees to another entity." [thesaurus.maths:thesaurus.maths] +comment: TODO: decide on correct parentage. +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001323 +name: area +def: "A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent." [Wikipedia:http\://en.wikipedia.org/wiki/Area] +subset: attribute_slim +subset: mpath_slim +subset: scalar_slim +is_a: PATO:0001709 ! 2-D extent + +[Term] +id: PATO:0001324 +name: bilateral symmetry +def: "A symmetry quality inhering in a bearer by virtue of the bearer's being symmetric about a plane running from its frontal end to its caudal end (head to tail), and has nearly identical right and left halves." [Wikipedia:http\://en.wikipedia.org/wiki/Bilateral_symmetry] +subset: cell_quality +subset: value_slim +synonym: "left-right symmetry" EXACT [] +synonym: "pennate" RELATED [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0002-2908-3327] +is_a: PATO:0000965 ! symmetry + +[Term] +id: PATO:0001325 +name: radial symmetry +def: "A symmetry quality inhering in a bearer by virtue of the bearer's having equal proportion around a central point or axis." [PATOC:GVG] +subset: attribute_slim +subset: cell_quality +synonym: "centric" EXACT [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0002-2908-3327] +is_a: PATO:0000965 ! symmetry + +[Term] +id: PATO:0001326 +name: obsolete left-right symmetry +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0001327 +name: zygomorphic +def: "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by only one longitudinal plane passing through the axis." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0001324 ! bilateral symmetry + +[Term] +id: PATO:0001328 +name: actinomorphic +def: "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by any longitudinal plane passing through the axis." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0001325 ! radial symmetry + +[Term] +id: PATO:0001329 +name: flavourful +def: "A flavor quality inhering in a bearer by virtue of the bearer's having flavour." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0000043 ! flavor +disjoint_from: PATO:0001330 ! flavourless + +[Term] +id: PATO:0001330 +name: flavourless +def: "A flavor quality inhering in a bearer by virtue of the bearer's lacking flavour." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0000043 ! flavor + +[Term] +id: PATO:0001331 +name: odorous +def: "An odor quality inhering in a bearer by virtue of the bearer's having odour." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000058 ! odor + +[Term] +id: PATO:0001332 +name: amorphous +def: "A morphology quality inhering in a bearer by virtue of the bearer's lack of distinct morphology." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0001333 +name: temporally extended +def: "A quality of a process which ends later than the natural end time." [PATOC:melissa] +subset: value_slim +is_a: PATO:0002304 ! increased process quality +is_a: PATO:0002324 ! offset quality + +[Term] +id: PATO:0001334 +name: diameter +def: "A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary." [Wikipedia:http\://en.wikipedia.org/wiki/Diameter] +subset: attribute_slim +subset: mpath_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0001335 +name: bacterial mating type +def: "A mating type that indicates whether the F plasmid has integrated into the chromosome." [MGED:MGED] +subset: attribute_slim +is_a: PATO:0001895 ! mating type + +[Term] +id: PATO:0001336 +name: obsolete unknown sex +def: "A biological sex quality inhering in an individual whose sex is unknown." [MGED:MGED] +comment: Unknown is not a type of sex. +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0001337 +name: yeast mating type +def: "A yeast mating type." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001895 ! mating type + +[Term] +id: PATO:0001338 +name: mixed sex +def: "A biological sex quality inhering in a population of multiple sexes." [MGED:MGED] +comment: For example a mixture of females and male or males and hermaphrodites. +subset: value_slim +is_a: PATO:0002003 ! population quality + +[Term] +id: PATO:0001339 +name: biomaterial purity +def: "A composition quality inhering in an bearer by virtue of the bearer's homogeneity of a biomaterial." [MGED:MGED] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001340 +name: hermaphrodite +def: "A biological sex quality inhering in an organism or a population with both male and female sexual organs in one individual." [MGED:MGED] +subset: value_slim +synonym: "intersex" EXACT [] +is_a: PATO:0001894 ! phenotypic sex + +[Term] +id: PATO:0001341 +name: a mating type (yeast) +def: "A S. cerevisiae mating type cells that secrete a pheromone that in alpha haploids stimulates processes that lead to mating." [MGED:MGED] +subset: value_slim +synonym: "a" BROAD [] +is_a: PATO:0001342 ! Saccharomyces cerevisiae mating type + +[Term] +id: PATO:0001342 +name: Saccharomyces cerevisiae mating type +def: "A S. cerevisiae mating type." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001337 ! yeast mating type + +[Term] +id: PATO:0001343 +name: Schizosaccharomyces pombe mating type +def: "A S. pombe mating type determined by the gene configuration on the mat1 locus." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001337 ! yeast mating type + +[Term] +id: PATO:0001344 +name: alpha mating type (yeast) +def: "A S. cerevisiae mating type cells that secrete a pheromone that stimulates a haploids." [MGED:MGED] +subset: value_slim +synonym: "alpha" BROAD [] +is_a: PATO:0001342 ! Saccharomyces cerevisiae mating type + +[Term] +id: PATO:0001345 +name: h minus +def: "A S. pombe mating type determined by the mat1-Mc and mat1-Mi on the mat1 locus." [PATOC:GVG] +subset: value_slim +synonym: "h -" EXACT [] +synonym: "M" EXACT [] +is_a: PATO:0001343 ! Schizosaccharomyces pombe mating type + +[Term] +id: PATO:0001346 +name: h plus +def: "A S. pombe mating type determined by the mat1-Pc and mat1-Pi on the mat1 locus." [PATOC:GVG] +subset: value_slim +synonym: "h+" EXACT [] +synonym: "P" EXACT [] +is_a: PATO:0001343 ! Schizosaccharomyces pombe mating type + +[Term] +id: PATO:0001347 +name: F mating type +def: "A bacterial mating type indicating the presence of F plasmid in a bacterial cell." [MGED:MGED] +subset: value_slim +is_a: PATO:0001335 ! bacterial mating type + +[Term] +id: PATO:0001348 +name: F minus mating type +def: "A bacterial mating type indicating the absence of F plasmid in a bacterial cell." [MGED:MGED] +subset: value_slim +synonym: "F-" EXACT [] +is_a: PATO:0001335 ! bacterial mating type + +[Term] +id: PATO:0001349 +name: high frequency recombinant +def: "A mating type that indicates that the F plasmid has integrated into the chromosome." [MGED:MGED] +subset: value_slim +synonym: "Hfr" EXACT [] +is_a: PATO:0001348 ! F minus mating type + +[Term] +id: PATO:0001350 +name: angular acceleration +def: "A physical quality inhering in a bearer by virtue of the rate of change of the bearer's angular velocity." [Wikipedia:http\://en.wikipedia.org/wiki/Angular_acceleration] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001028 ! acceleration + +[Term] +id: PATO:0001351 +name: area density +def: "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given area." [Wikipedia:http\://en.wikipedia.org/wiki/Area_density] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001019 ! mass density + +[Term] +id: PATO:0001352 +name: linear density +def: "A density quality which is equal to the mass exerting an influence on a one-dimensional object." [Wikipedia:http\://en.wikipedia.org/wiki/Linear_density] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001019 ! mass density + +[Term] +id: PATO:0001353 +name: volumetric density +def: "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given volume." [Wikipedia:http\://en.wikipedia.org/wiki/Mass_density] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001019 ! mass density + +[Term] +id: PATO:0001354 +name: translucent +def: "A optical quality inhering in a bearer by virtue of the bearer's exhibiting low opacity." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000957 ! opacity + +[Term] +id: PATO:0001355 +name: convex +def: "A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0002005 ! concavity +property_value: RO:0002604 PATO:0001857 + +[Term] +id: PATO:0001356 +name: pleomorphic +def: "A shape quality inhering in a cell by virtue of the bearer's ability to take on two or more different shapes during its life cycle." [PATOC:GVG] +subset: cell_quality +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001357 +name: pulvinate +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped like a cushion or has a marked convex cushion-like form." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape + +[Term] +id: PATO:0001358 +name: umbonate +def: "A quality inhering in a bearer by virtue of the bearer's having a knob or knoblike protuberance." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0001359 +name: rugose +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having many wrinkles or creases on the surface." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001925 ! surface feature shape + +[Term] +id: PATO:0001360 +name: filamentous +def: "A shape quality inhering in a bearer by virtue of the bearer's having thin filamentous extensions at its edge." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001361 +name: warty +def: "A texture quality inhering in a bearer by virtue of the bearer's being covered with warts or projections that resemble warts resulting in a hard rough surface." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000700 ! rough + +[Term] +id: PATO:0001362 +name: fragile +def: "A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed." [WordNet:WordNet] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001662 ! fragility +disjoint_from: PATO:0001716 ! non-fragile +property_value: RO:0002604 PATO:0001716 + +[Term] +id: PATO:0001364 +name: rhizoidal +def: "A quality inhering in a bearer by virtue of the bearer's having root like extensions radiating from its center." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0001365 +name: spiny +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having spines, thorns or similar thin projections on its surface." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0001925 ! surface feature shape + +[Term] +id: PATO:0001366 +name: punctiform +def: "A shape quality inhering in a bearer by virtue of the bearer's being small and resembling a point." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001367 +name: lobate +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001925 ! surface feature shape + +[Term] +id: PATO:0001368 +name: erose +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having an irregularly toothed edge." [PATOC:GVG] +subset: cell_quality +subset: value_slim +synonym: "jagged" RELATED [] +is_a: PATO:0001976 ! serration + +[Term] +id: PATO:0001369 +name: raised +def: "A shape quality inhering in a colony by virtue of the bearer's appearing above the medium surface with terraced edges." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001370 +name: viscid +def: "A coating quality which is sticky or clammy." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002012 ! coating + +[Term] +id: PATO:0001371 +name: mucoid +def: "A composition quality inhering in an bearer by virtue of the bearer's consistency of mucus." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "mucinous" RELATED [] +synonym: "mucous" RELATED [] +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001372 +name: refractivity +def: "A physical quality that inheres in propagating wave (light or sound) virtue of the bearer's change in direction when passing from one medium to another." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001294 ! radiation reflective quality + +[Term] +id: PATO:0001373 +name: glistening +def: "A reflectivity quality inhering in a bearer by virtue of the bearer's reflecting lots of light." [PATOC:GVG] +subset: value_slim +synonym: "glossy" EXACT [] +synonym: "shiny" EXACT [] +is_a: PATO:0001297 ! reflectivity + +[Term] +id: PATO:0001374 +name: ploidy +def: "A cellular quality inhering in a bearer by virtue of the bearer's number of homologous sets of chromosomes in the nucleus or primary chromosome-containing compartment of the cell, each set essentially coding for all the biological traits of the organism." [Wikipedia:http\://en.wikipedia.org/wiki/Ploidy] +subset: attribute_slim +is_a: PATO:0001396 ! cellular quality + +[Term] +id: PATO:0001375 +name: haploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of homologous chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Haploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001393 ! euploid + +[Term] +id: PATO:0001376 +name: monoploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of unique homologous chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Monoploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001393 ! euploid + +[Term] +id: PATO:0001377 +name: polyploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's containing more than two homologous sets of chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Polyploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001393 ! euploid + +[Term] +id: PATO:0001378 +name: autopolyploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from a single species." [Wikipedia:http\://en.wikipedia.org/wiki/Autopolyploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001379 +name: allopolyploidy +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from different species." [Wikipedia:http\://en.wikipedia.org/wiki/Allopolyploidy] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001380 +name: paleopolyploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's having an ancient polyploid ancestor." [Wikipedia:http\://en.wikipedia.org/wiki/Paleopolyploid] +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001381 +name: triploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing three homologous sets of chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Triploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001382 +name: tetraploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Tetraploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001383 +name: pentaploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing five homologous sets of chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Pentaploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001384 +name: hexaploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Hexaploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001385 +name: aneuploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's containing a non-integral multiple of the monoploid number, due to extra or missing chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Aneuploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001374 ! ploidy + +[Term] +id: PATO:0001386 +name: monosomy +def: "An aneuploidy quality inhering in a bearer by virtue of the bearer's containing only one chromosome from a pair in a cell's nucleus." [Wikipedia:http\://en.wikipedia.org/wiki/Monosomy] +subset: cell_quality +subset: value_slim +is_a: PATO:0001385 ! aneuploid + +[Term] +id: PATO:0001387 +name: disomy +def: "An aneuploidy quality inhering in a bearer by virtue of the bearer's containing only two chromosome from a pair in a cell's nucleus." [Wikipedia:http\://en.wikipedia.org/wiki/Disomy] +comment: For diploid organisms, such as humans, it is the normal condition, whilst for organisms that are normally triploid or above, disomy is an aneuploidy. +subset: cell_quality +subset: value_slim +is_a: PATO:0001385 ! aneuploid + +[Term] +id: PATO:0001388 +name: uniparental disomy +def: "A disomy quality inhering in a bearer by virtue of the bearer's containing two copies of the chromosome from one of the parents (with no contribution from the other parent)." [Wikipedia:http\://en.wikipedia.org/wiki/Uniparental_disomy] +subset: cell_quality +subset: value_slim +is_a: PATO:0001387 ! disomy + +[Term] +id: PATO:0001389 +name: trisomy +def: "An aneuploidy quality inhering in a bearer by virtue of the bearer's containing three, instead of two, chromosomes of a particular numbered type in an organism." [Wikipedia:http\://en.wikipedia.org/wiki/Trisomy] +subset: cell_quality +subset: value_slim +is_a: PATO:0001385 ! aneuploid + +[Term] +id: PATO:0001390 +name: partial trisomy +def: "A trisomy quality inhering in a bearer when part of the bearer's extra chromosome is attached to one of the other chromosomes, or if one of the bearer's chromosomes has two copies of part of its chromosome." [Wikipedia:http\://en.wikipedia.org/wiki/Partial_trisomy] +subset: value_slim +is_a: PATO:0001389 ! trisomy + +[Term] +id: PATO:0001391 +name: mosaic trisomy +def: "A trisomy quality inhering in a bearer by virtue of the bearer's having extra chromosomal material in only some of it's cells." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0001389 ! trisomy + +[Term] +id: PATO:0001392 +name: endopolyploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's chromosome number being increased by endomitosis and for which the degree of ploidy is proportional to the number of times that endomitosis has taken place." [Wikipedia:http\://en.wikipedia.org/wiki/Endopolyploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001393 +name: euploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's containing an integral multiple of the monoploid number, possibly excluding the sex-determining chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Euploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001374 ! ploidy + +[Term] +id: PATO:0001394 +name: diploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's having two copies (homologs) of each chromosome, usually one from the mother and one from the father." [Wikipedia:http\://en.wikipedia.org/wiki/Diploid] +comment: The exact number may be one or two different from the 2n number and still be classified as diploidy (although with aneuploidy). Nearly all mammals are diploid organisms, although all individuals have some small fracton of cells that are polyploidy. +subset: cell_quality +subset: value_slim +is_a: PATO:0001393 ! euploid + +[Term] +id: PATO:0001395 +name: haplodiploid +def: "A diploidy quality inhering in a bearer in by virtue of belonging in a species whose one of the sexes has haploid cells and the other has diploid cells." [Wikipedia:http\://en.wikipedia.org/wiki/Haplodiploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001394 ! diploid + +[Term] +id: PATO:0001396 +name: cellular quality +def: "A monadic quality of continuant that exists at the cellular level of organisation." [PATOC:GVG] +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001397 +name: cellular potency +def: "A cellular quality that arises by virtue of whether the bearer's disposition to differentiate into one or more mature cell types." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001396 ! cellular quality + +[Term] +id: PATO:0001398 +name: self-renewal +def: "A cellular quality inhering in a bearer by virtue of the bearer's having the ability to go through numerous cycles of cell division while maintaining the undifferentiated state." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0002102 ! proliferative + +[Term] +id: PATO:0001399 +name: totipotent +def: "A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers and extraembryonic cell types." [Wikipedia:http\://en.wikipedia.org/wiki/Totipotent] +subset: cell_quality +subset: disposition_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency + +[Term] +id: PATO:0001400 +name: unipotent +def: "A cellular potency that is the capacity to produce only one differentiated cell type." [Wikipedia:http\://en.wikipedia.org/wiki/Unipotent] +comment: Unipotent cells have the quality of self-renewal which distinguishes them from non-stem cells. +subset: cell_quality +subset: disposition_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency + +[Term] +id: PATO:0001401 +name: oligopotent +def: "A cellular potency that is the capacity to form multiple differentiated cell types of a specific lineage and lack self renewing capacity." [PATOC:MAH] +comment: Less potent than multipotent, often thought of as precursor or progenitor cell status. +subset: cell_quality +subset: disposition_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency + +[Term] +id: PATO:0001402 +name: multipotent +def: "A cellular potency that is the capacity to form multiple differentiated cell types." [Wikipedia:http\://en.wikipedia.org/wiki/Multipotent] +subset: cell_quality +subset: disposition_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency + +[Term] +id: PATO:0001403 +name: pluripotent +def: "A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers but not extraembryonic cell types." [Wikipedia:http\://en.wikipedia.org/wiki/Pluripotent] +subset: cell_quality +subset: disposition_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency + +[Term] +id: PATO:0001404 +name: nucleate quality +def: "A cellular quality inhering in a bearer by virtue of bearer's number of nuclei." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001396 ! cellular quality + +[Term] +id: PATO:0001405 +name: anucleate +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having no nucleus." [Biology-online:Biology-online] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001404 ! nucleate quality + +[Term] +id: PATO:0001406 +name: binucleate +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei." [Biology-online:Biology-online] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001908 ! multinucleate + +[Term] +id: PATO:0001407 +name: mononucleate +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus." [Biology-online:Biology-online] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0002505 ! nucleated + +[Term] +id: PATO:0001408 +name: ciliatedness +def: "A cellular quality inhering in a bearer by virtue of the bearer's having thin, tail-like projections extending outwards from the cell body." [Wikipedia:http\://en.wikipedia.org/wiki/Ciliated] +subset: cell_quality +subset: value_slim +is_a: PATO:0001396 ! cellular quality + +[Term] +id: PATO:0001409 +name: spindle-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's resembling a long tapered rod." [Biology-online:Biology-online] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape + +[Term] +id: PATO:0001410 +name: striated +def: "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel." [Biology-online:Biology-online] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001411 +name: structured +def: "A structural quality inhering in a bearer by virtue of the bearer's having distinct structure." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000141 ! structure +property_value: RO:0002604 PATO:0001412 + +[Term] +id: PATO:0001412 +name: unstructured +def: "A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000141 ! structure +property_value: RO:0002604 PATO:0001411 + +[Term] +id: PATO:0001413 +name: angular velocity +def: "A physical quality inhering in a bearer by virtue of the rate of the bearer's angular movement about an axis; the angle rotated in a given time." [Wikipedia:http\://en.wikipedia.org/wiki/Angular_velocity] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002242 ! velocity + +[Term] +id: PATO:0001414 +name: catalytic activity +def: "A physical quality inhering in a catalyst by virtue of the amount of the catalyst's action." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001415 +name: morbidity +def: "A quality inhering in a population by virtue of the proportion of its members that are ill at a given time." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002003 ! population quality + +[Term] +id: PATO:0001416 +name: regular duration +def: "A duration which has regular start and/or end times." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001309 ! duration +property_value: RO:0002604 PATO:0001417 + +[Term] +id: PATO:0001417 +name: irregular duration +def: "A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times." [PATOC:melissa] +subset: value_slim +is_a: PATO:0001309 ! duration +property_value: RO:0002604 PATO:0001416 + +[Term] +id: PATO:0001418 +name: lethargic +def: "A behavioral quality inhering in a bearer by virtue of the bearer's being deficient in alertness or activity." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0002265 ! behavioural activity + +[Term] +id: PATO:0001419 +name: sharp +def: "A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0000944 ! sharpness + +[Term] +id: PATO:0001420 +name: buoyancy +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to rise or float in a fluid medium such as water or air." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001421 +name: alive +def: "A viability quality inhering in a bearer by virtue of the bearer's condition before death." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001422 +name: dead +def: "A viability quality inhering in a bearer by virtue of the cessation of the bearer's life." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001423 +name: refractile +def: "A reflectivity quality inhering in the bearer by virtue of the bearer's ability to refract light." [biology-online:biology-online] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001372 ! refractivity + +[Term] +id: PATO:0001424 +name: violet +def: "A color hue with very low wavelength of that portion of the visible spectrum lying between reddish blue or bluish purple, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 380 nanometers." [Wikipedia:http\://en.wikipedia.org/wiki/Violet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0001425 +name: rosy +def: "A color hue consisting of red hue and yellow hue and high brightness." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0001426 +name: maroon +def: "A color consisting of purple and brown hue." [Wikipedia:http\://en.wikipedia.org/wiki/Maroon] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0001427 +name: compound acidity +def: "A concentration quality inhering in compound by virtue of the bearer's tendency to act as a hydron donor." [chemicool:chemicool] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001842 ! acidity + +[Term] +id: PATO:0001428 +name: medium acidity +def: "A concentration quality inhering in a medium by virtue of the bearer's tendency to hydronate a specific reference base." [chemicool:chemicool] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001842 ! acidity + +[Term] +id: PATO:0001429 +name: acidic +def: "An medium acidity quality inhering in a solution by virtue of the bearer's a high concentration of H+ ions." [chemicool:chemicool] +subset: value_slim +is_a: PATO:0001428 ! medium acidity + +[Term] +id: PATO:0001430 +name: alkaline +def: "An medium acidity quality inhering in a solution by virtue of the bearer's a low concentration of H+ ions." [chemicool:chemicool] +subset: value_slim +is_a: PATO:0001428 ! medium acidity + +[Term] +id: PATO:0001431 +name: adhesivity +def: "An emergent molecular quality that arises by virtue of the bearer's disposition to exhibit molecular attraction to another entity in contact." [PATOC:GVG] +comment: The definition is general enough to cover adhesion arising from different kinds of chemical bonding/forces, although for PATO this term will most commonly used for cellular adhesion. See also GO:0031589 "cell-substrate adhesion". +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "adhesiveness" EXACT [] +synonym: "stickiness" RELATED [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001432 +name: decayed +def: "A quality inhering in a bearer by virtue of the bearer's decomposition into component parts." [Medical-dictionary:Medical-dictionary] +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001433 +name: growth quality of occurrent +alt_id: PATO:0001489 +def: "A quality of a single process which describes the growth of an organism, structure, or group of organisms." [PATOC:MAH] +subset: attribute_slim +synonym: "growth quality of a process" RELATED [] +synonym: "growth timing quality" RELATED [] +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001434 +name: reproductive quality +def: "An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring." [WordNet:WordNet] +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0001435 +name: attachment quality +def: "A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001436 +name: sessile (sensu botany) +def: "An attachment quality inhering in a flower by virtue of the bearer's lacking a stalk, as in flowers or leaves that grow directly from the stem." [Wikipedia:http\://en.wikipedia.org/wiki/Sessility_(botany)] +subset: relational_slim +subset: value_slim +is_a: PATO:0001435 ! attachment quality + +[Term] +id: PATO:0001437 +name: sessile (sensu zoology) +def: "A attachment quality inhering in a bearer by virtue of the bearer's inability to move about." [Wikipedia:http\://en.wikipedia.org/wiki/Sessile_(zoology)] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001435 ! attachment quality + +[Term] +id: PATO:0001438 +name: pedicellate +def: "A attachment quality inhering in a bearer by virtue of the bearer's having or being supported by a pedicel or pedicle." [MedTerms:MedTerms] +subset: relational_slim +subset: value_slim +is_a: PATO:0001435 ! attachment quality + +[Term] +id: PATO:0001439 +name: tonicity +alt_id: PATO:0001498 +def: "A contractile quality inhering in a bearer by virtue of the bearer's elastic tension that facilitate response to stimuli." [WordNet:WordNet] +comment: TODO: we need a clearer differentium between this and contractility - or merge? +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +synonym: "tone" EXACT [] +is_a: PATO:0001579 ! contractility + +[Term] +id: PATO:0001440 +name: homophilic +def: "A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an identical molecule in an adjacent cell." [GO:GO] +subset: relational_slim +subset: value_slim +is_a: PATO:0001531 ! cellular adhesivity +disjoint_from: PATO:0001441 ! heterophilic + +[Term] +id: PATO:0001441 +name: heterophilic +def: "A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an nonidentical molecule in an adjacent cell." [GO:GO] +subset: relational_slim +subset: value_slim +is_a: PATO:0001531 ! cellular adhesivity + +[Term] +id: PATO:0001442 +name: wholeness +def: "A structural quality inhering in a bearer by virtue of whether the bearer includes all its components." [thefreedictionary.com:thefreedictionary.com] +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001444 +name: broken +alt_id: PATO:0001443 +alt_id: PATO:0001820 +def: "A broken quality inhering in a bearer by virtue of the bearer's being broken open." [PATOC:GVG] +subset: value_slim +synonym: "burst" EXACT [] +synonym: "cracked" RELATED [] +synonym: "fractured" EXACT [] +synonym: "fragmented" EXACT [] +synonym: "hemorrhaged" RELATED [] +synonym: "ruptured" EXACT [] +synonym: "split" RELATED [] +synonym: "torn" RELATED [] +is_a: PATO:0001442 ! wholeness +disjoint_from: PATO:0001446 ! whole + +[Term] +id: PATO:0001445 +name: disassembled +def: "A wholeness quality inhering in a bearer by virtue of the bearer's being taken apart into its constituent parts." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0001444 ! broken + +[Term] +id: PATO:0001446 +name: whole +def: "A wholeness quality inhering in a bearer by virtue of the bearer's including all its components." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0001442 ! wholeness + +[Term] +id: PATO:0001447 +name: calcified +def: "A composition quality inhering in an bearer by virtue of the bearer's being encrusted or impregnated with calcium carbonate (CHEBI:3311)." [thefreedictionary.com:thefreedictionary.com] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "calcareous" EXACT [] +synonym: "calcification" NARROW [] +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001448 +name: ossified +def: "A composition quality inhering in an bearer by virtue of the bearer's being hardened by the deposition of calcium into bone." [MAMMALOGY:MAMMALOGY] +subset: value_slim +is_a: PATO:0001447 ! calcified + +[Term] +id: PATO:0001449 +name: cartilaginous +def: "A composition quality inhering in an bearer by virtue of the bearer's cartilage quantities." [Wikipedia:http\://en.wikipedia.org/wiki/Cartilaginous] +comment: Cartilage is a type of dense connective tissue. It is composed of specialized cells called chondrocytes (CL:0000138) that produce a large amount of extracellular matrix composed of collagen fibers, abundant ground substance rich in proteoglycan, and elastin fibers. +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001450 +name: edematous +def: "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of extracellular fluid." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +synonym: "edema" NARROW [] +synonym: "edemic" EXACT [] +synonym: "oedema" NARROW [] +synonym: "oedematous" EXACT [] +synonym: "oedemic" EXACT [] +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001451 +name: obsolete edematous (sensu botany) +def: "An extended swelling in plant organs caused primarily by an excessive accumulation of water." [thefreedictionary.com:thefreedictionary.com] +synonym: "edemic" RELATED [] +synonym: "oedematous" RELATED [] +synonym: "oedemic" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0001453 +name: detached from +def: "An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "detached" EXACT [] +is_a: PATO:0001435 ! attachment quality + +[Term] +id: PATO:0001454 +name: sensitivity to oxygen +def: "A sensitivity quality inhering in a bearer by virtue of the bearer's dependence on oxygen." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000085 ! sensitivity toward + +[Term] +id: PATO:0001455 +name: aerobic +def: "A quality inhering in a bearer by virtue of the bearer's dependence on oxygen." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001454 ! sensitivity to oxygen +disjoint_from: PATO:0001456 ! anaerobic +property_value: RO:0002604 PATO:0001456 + +[Term] +id: PATO:0001456 +name: anaerobic +def: "A quality inhering in a bearer by virtue of the bearer's independence on oxygen." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001454 ! sensitivity to oxygen +property_value: RO:0002604 PATO:0001455 + +[Term] +id: PATO:0001457 +name: sensitivity of a process +def: "A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "sensitivity of occurrent" EXACT [] +is_a: PATO:0002062 ! physical quality of a process + +[Term] +id: PATO:0001458 +name: sensitivity of a process to oxygen +def: "A sensitivity of a process quality inhering in a bearer by virtue of the bearer's unfolding in a location with or without oxygen." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +synonym: "sensitivity of occurrent to oxygen" EXACT [] +is_a: PATO:0001457 ! sensitivity of a process + +[Term] +id: PATO:0001459 +name: aerobic (for occurrence) +def: "A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001458 ! sensitivity of a process to oxygen +property_value: RO:0002604 PATO:0001460 + +[Term] +id: PATO:0001460 +name: anaerobic (for occurrence) +def: "A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001458 ! sensitivity of a process to oxygen +property_value: RO:0002604 PATO:0001459 + +[Term] +id: PATO:0001461 +name: surface tension +def: "A physical quality inhering in a liquid by virtue of the bearer's ability to attraction of molecules at its surface as a result of unbalanced molecular cohesive forces." [Wikipedia:http\://en.wikipedia.org/wiki/Surface_tension] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001462 +name: membrane potential +def: "A quality inhering in a cell's plasma membrane by virtue of the electrical potential difference across it." [Wikipedia:http\://en.wikipedia.org/wiki/Membrane_potential] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001464 ! electric potential + +[Term] +id: PATO:0001463 +name: action potential +def: "A quality inhering in a cell's plasma membrane by virtue of a brief fluctuation in the bearer's potential caused by the rapid opening and closing of voltage-gated ion channels." [Wikipedia:http\://en.wikipedia.org/wiki/Action_potential] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001464 ! electric potential + +[Term] +id: PATO:0001464 +name: electric potential +def: "A quality that is equal to the potential energy per unit charge associated with a static (time-invariant) electric field, also called the electrostatic potential." [Wikipedia:http\://en.wikipedia.org/wiki/Electric_potential] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001465 +name: monstrous +def: "A malformed quality inhering in a bearer by virtue of the bearer's all-encompassing, grotesque morphological defects." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000646 ! malformed + +[Term] +id: PATO:0001466 +name: curved rostral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the front of an organism." [PATOC:GVG] +subset: value_slim +synonym: "curved anterior" EXACT [] +synonym: "curved superior (human torso)" EXACT [] +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001467 +name: curved caudal +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the part of the body from which the tail arises." [PATOC:GVG] +subset: value_slim +synonym: "curved inferior (human torso)" EXACT [] +synonym: "curved posterior" EXACT [] +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001468 +name: curved dorsal +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the back or upper surface of an organism." [PATOC:GVG] +subset: value_slim +synonym: "curved posterior (human torso)" EXACT [] +synonym: "curved superior (human head)" EXACT [] +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001469 +name: curved ventral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the abdomen of an organism." [PATOC:GVG] +subset: value_slim +synonym: "curved anterior (human torso)" EXACT [] +synonym: "curved inferior (human head)" EXACT [] +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001470 +name: proportionality to +def: "A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity." [PATOC:nw] +comment: Examples: height to weight; brain size to body size. These could all be children of proportionality. Proportions can be measured as ratios. Some measures may be dimensionless. Not all ratios measure proportionality, eg m/s measures velocity which is not a proportion in the sense defined above, it is a quality in its own right. +subset: attribute_slim +subset: relational_slim +synonym: "proportion" EXACT [] +synonym: "proportionality" EXACT [] +synonym: "quotient" EXACT [] +synonym: "rate" RELATED [] +synonym: "ratio" EXACT [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001472 +name: decreased depth +alt_id: PATO:0001692 +def: "A depth which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low depth" EXACT [] +synonym: "shallow" EXACT [] +is_a: PATO:0000587 ! decreased size +is_a: PATO:0001595 ! depth +property_value: RO:0002604 PATO:0001596 + +[Term] +id: PATO:0001473 +name: duplicated +def: "A quality inhering in a bearer by virtue of the bearer's being present in two copies." [Dictionary.com:Dictionary.com] +subset: mpath_slim +subset: value_slim +synonym: "doubled" EXACT [] +is_a: PATO:0000470 ! increased amount + +[Term] +id: PATO:0001474 +name: anteverted +def: "An oriented quality inhering in a bearer by virtue of the bearer's axis being positioned forward." [bdid:bdid] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000614 ! oriented + +[Term] +id: PATO:0001475 +name: increased position +def: "A position which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high position" RELATED [] +is_a: PATO:0000140 ! position +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001476 + +[Term] +id: PATO:0001476 +name: decreased position +def: "A positional which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low position" RELATED [] +is_a: PATO:0000140 ! position +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001475 + +[Term] +id: PATO:0001477 +name: retracted +def: "A positional quality inhering in a bearer by virtue of the bearer's being drawn in or pulled back from any given point." [Dictionary.com:Dictionary.com] +subset: value_slim +synonym: "moved" BROAD [] +synonym: "retruded" RELATED [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001478 +name: collapsed +def: "A structural quality inhering in a bearer by virtue of the bearer's being broken down; caved in." [Dictionary.com:Dictionary.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001480 +name: spongy +def: "A structural quality inhering in a bearer by virtue of the bearer's resembling a sponge in elasticity, absorbency, or porousness." [Answers.com:Answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +relationship: has_part PATO:0000982 ! permeable + +[Term] +id: PATO:0001481 +name: sloped +def: "A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001482 +name: prominent +def: "A quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line." [Dictionary.com:Dictionary.com] +subset: value_slim +is_a: PATO:0001598 ! protruding +is_a: PATO:0015007 ! prominence + +[Term] +id: PATO:0001483 +name: aplastic +def: "Absence of an organ, tissue or cell due to failure to develop from a primordium or precursor cell." [PATOC:GVG, PATOC:PortlandMeetingFeb2015] +comment: With aplasia, the primordium or precursor develops, but does not proceed in its development to a mature structure +subset: mpath_slim +subset: value_slim +synonym: "aplasia" EXACT [] +synonym: "undeveloped" EXACT [] +is_a: PATO:0002290 ! aplastic/hypoplastic +is_a: PATO:0002291 ! agenesis + +[Term] +id: PATO:0001484 +name: recent +def: "A quality of a process which occurs near to or not long before the present." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0002325 ! onset quality + +[Term] +id: PATO:0001485 +name: condensed +alt_id: PATO:0001840 +def: "A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "compact" BROAD [] +synonym: "compressed" EXACT [] +synonym: "dense" RELATED [] +synonym: "squashed" EXACT [] +is_a: PATO:0000141 ! structure +property_value: RO:0002604 PATO:0002452 + +[Term] +id: PATO:0001486 +name: chronological age +def: "An age quality that exists by virtue of the time (years and months) that the bearer has existed." [WordNet:Wordnet] +subset: attribute_slim +is_a: PATO:0000011 ! age + +[Term] +id: PATO:0001487 +name: senescent +def: "A time quality inhering in a bearer by virtue of the bearer's growing old; aging." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000011 ! age + +[Term] +id: PATO:0001488 +name: cellular motility +def: "A cellular quality inhering in a cell by virtue of whether the bearer exhibits the ability to move spontaneously." [thefreedictionary.com:thefreedictionary.com] +comment: Term should be obsoleted and the GO term cellular motility should be used instead. +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001396 ! cellular quality + +[Term] +id: PATO:0001490 +name: heterochronic growth +def: "A growth quality of a process inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced or increased growth." [PATOC:MAH] +subset: value_slim +is_a: PATO:0001433 ! growth quality of occurrent + +[Term] +id: PATO:0001491 +name: neotenous growth +def: "A paedomorphic growth quality which is due to a reduced rate." [PATOC:mh] +subset: value_slim +synonym: "neotenic growth" EXACT [] +is_a: PATO:0001749 ! paedomorphic growth + +[Term] +id: PATO:0001492 +name: growth rate +comment: This term will be obsoleted; Use GO:growth and PATO:rate. +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0050001 ! rate of continuous process + +[Term] +id: PATO:0001493 +name: hypertrophic growth +comment: This term will be obsoleted; Use GO:growth and PATO:rate. +subset: value_slim +is_a: PATO:0001492 ! growth rate +property_value: RO:0002604 PATO:0001494 + +[Term] +id: PATO:0001494 +name: hypotrophic growth +comment: This term will be obsoleted; Use GO:growth and PATO:rate. +subset: value_slim +is_a: PATO:0001492 ! growth rate +property_value: RO:0002604 PATO:0001493 + +[Term] +id: PATO:0001495 +name: notched +def: "A concave quality inhering in a bearer by virtue of the bearer's shape being a V-shaped cut." [thefreedictionary.com:thefreedictionary.com] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "indented" RELATED [] +is_a: PATO:0001857 ! concave + +[Term] +id: PATO:0001496 +name: brood quality +def: "A reproductive quality inhering in the young of an animal by virtue of the bearer's being cared for at one time." [WordNet:WordNet] +subset: attribute_slim +is_a: PATO:0001434 ! reproductive quality + +[Term] +id: PATO:0001497 +name: brood viability +def: "A reproductive quality inhering in the young of an animal by virtue of the bearer's disposition to survive and develop normally." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001499 +name: spherical +alt_id: PATO:0000408 +def: "A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter)." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "globular" EXACT [] +synonym: "rotund" RELATED [] +is_a: PATO:0001865 ! spheroid +relationship: has_cross_section PATO:0000411 ! circular + +[Term] +id: PATO:0001500 +name: tapered +def: "A shape quality inhering in a bearer by virtue of the bearer's being gradually narrower or thinner toward one end." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +synonym: "taper" EXACT [] +is_a: PATO:0001419 ! sharp + +[Term] +id: PATO:0001501 +name: immature +def: "A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] +subset: value_slim +synonym: "underdeveloped" RELATED [] +is_a: PATO:0000261 ! maturity +property_value: RO:0002604 PATO:0001701 + +[Term] +id: PATO:0001502 +name: complexity +def: "A monadic quality of continuant inhering in a bearer by virtue of the bearer's being intricate and compounded." [WordNet:WordNet] +comment: TODO: obsolete this. +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001503 +name: simple +def: "A complexity quality in a bearer by virtue of the bearer's having few parts or being complicated or compound." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001502 ! complexity +disjoint_from: PATO:0001504 ! complex + +[Term] +id: PATO:0001504 +name: complex +def: "A complexity quality inhering in a bearer by virtue of the bearer's being intricate and compounded." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001502 ! complexity + +[Term] +id: PATO:0001505 +name: separated from +def: "A structural quality inhering in a bearer by virtue of the bearer's not being in contact with another entity, or of no longer being connected or joined with another entity." [WordNet:WordNet] +subset: relational_slim +subset: value_slim +synonym: "discontiguous" RELATED [] +synonym: "divided_from" RELATED [] +synonym: "splitted from" RELATED [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001506 +name: diastatic +def: "A structural quality inhering in a bearer by virtue of the bearer's separation of normally joined parts, such as the separation of adjacent bones without fracture or of certain abdominal muscles during pregnancy." [answers.com:answers.com] +subset: relational_slim +subset: value_slim +is_a: PATO:0001505 ! separated from + +[Term] +id: PATO:0001507 +name: disrupted +def: "A quality of a single process inhering in a bearer by virtue of the bearer's being interrupted of its normal course." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000057 ! occurrence + +[Term] +id: PATO:0001509 +name: functionality +def: "A quality of a single physical entity that arises by virtue of whether the bearer exhibits the ability to perform a regular function(s)." [PATOC:MAH] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001510 +name: functional +def: "A functionality quality held by the bearer when the latter is able to perform a regular function(s)." [PATOC:MAH] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001509 ! functionality +property_value: RO:0002604 PATO:0001511 + +[Term] +id: PATO:0001511 +name: non-functional +alt_id: PATO:0001640 +def: "A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s)." [PATC:MAH] +subset: disposition_slim +subset: value_slim +synonym: "defective" RELATED [] +synonym: "disfunctional" EXACT [] +synonym: "failure" RELATED [] +synonym: "functional failure" EXACT [] +is_a: PATO:0001509 ! functionality +property_value: RO:0002604 PATO:0001510 + +[Term] +id: PATO:0001512 +name: punctate +def: "A pattern inhering in a surface by virtue of the bearer's being marked by the presence of dots, punctures, points or pits." [medical-dictionary:medical-dictionary] +subset: mpath_slim +subset: value_slim +synonym: "dotted" RELATED [] +synonym: "spotted" RELATED [] +synonym: "stippled" RELATED [] +is_a: PATO:0000330 ! irregular spatial pattern + +[Term] +id: PATO:0001514 +name: delaminated +def: "A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer." [PATOC:cjm] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001515 +name: variable color +def: "A color quality inhering in a bearer by virtue of the bearer's being uneven in color." [PATOC:NC] +subset: value_slim +synonym: "murky" RELATED [] +is_a: PATO:0000019 ! color pattern + +[Term] +id: PATO:0001516 +name: focus +def: "An optical quality where light rays originating from a point on the object converge." [Wikipedia:http\://en.wikipedia.org/wiki/Focus_(optics)] +subset: attribute_slim +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0001517 +name: focused +def: "An optical quality inhering in a bearer by virtue of the bearer's having focus." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001516 ! focus + +[Term] +id: PATO:0001518 +name: blurry +def: "An optical quality inhering in a bearer by virtue of the bearer's lacking focus." [PATOC:NC] +subset: value_slim +is_a: PATO:0001516 ! focus + +[Term] +id: PATO:0001519 +name: sound quality +def: "A quality inhering in a bearer by virtue of vibration, as perceived by the sense of hearing." [Wikipedia:http\://en.wikipedia.org/wiki/Sound_quality] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001520 +name: sound frequency +def: "The frequency of transmitted vibrations." [thefreedictionary.com:thefreedictionary.com] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000044 ! frequency + +[Term] +id: PATO:0001521 +name: sound amplitude +def: "A physical quality inhering in a sound wave by virtue of the maximum magnitude (value without regard to sign) of its disturbance." [answers.com:answers.com] +subset: attribute_slim +synonym: "loudness" BROAD [] +is_a: PATO:0000080 ! amplitude + +[Term] +id: PATO:0001522 +name: sound speed +def: "A physical quality inhering in sound by virtue of the bearer's travelling speed in a given medium under specified conditions." [Wikipedia:http\://en.wikipedia.org/wiki/Sound_speed] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000008 ! speed + +[Term] +id: PATO:0001523 +name: sound wavelength +def: "A physical quality which is equal to the quotient of the speed of a sound wave divided by its wavelength." [Wikipedia:http\://en.wikipedia.org/wiki/Sound_wavelength] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001242 ! wavelength + +[Term] +id: PATO:0001524 +name: intrasonic +def: "A sound frequency in the range of 0-20 Hz." [studyphysics:studyphysics] +subset: value_slim +is_a: PATO:0001520 ! sound frequency + +[Term] +id: PATO:0001525 +name: sonic +def: "A sound frequency in the range of 20 to 20.000 Hz." [url:http\://www.studyphysics.ca/] +subset: value_slim +is_a: PATO:0001520 ! sound frequency + +[Term] +id: PATO:0001526 +name: ultrasonic +def: "A sound frequency in the range of 20 000 + Hz." [studyphysics:studyphysics] +subset: value_slim +is_a: PATO:0001520 ! sound frequency + +[Term] +id: PATO:0001527 +name: quiet +def: "A sound amplitude which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001519 ! sound quality + +[Term] +id: PATO:0001528 +name: loud +def: "A sound amplitude which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001519 ! sound quality + +[Term] +id: PATO:0001529 +name: cellular spatiotemporal quality +def: "A spatiotemporal quality inhering in a cell." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001530 +name: behavioral quality of a process +def: "A quality of a single process inhering in a bearer by virtue of the bearer's behavior." [PATOC:GVG] +subset: attribute_slim +synonym: "behavioral quality of occurrent" EXACT [] +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001531 +name: cellular adhesivity +def: "A cellular quality that exists by virtue of the disposition of the cell to adhere to other cells and molecules, through the emergent action of the molecular parts of the cell surface." [PATOC:cjm] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001396 ! cellular quality +is_a: PATO:0001431 ! adhesivity + +[Term] +id: PATO:0001532 +name: mono-colored +def: "A color pattern inhering in a bearer by virtue of the bearer's having one hue." [PATOC:GVG] +subset: value_slim +synonym: "evenly colored" EXACT [] +synonym: "homogeneously colored" EXACT [] +synonym: "homogenously pigmented" RELATED [] +synonym: "uniformly colored" EXACT [] +is_a: PATO:0000019 ! color pattern + +[Term] +id: PATO:0001533 +name: multi-colored +def: "A color pattern inhering in a bearer by virtue of bearer's having two or more hues or degrees of saturation." [PATOC:GVG] +subset: value_slim +synonym: "variegated" EXACT [] +is_a: PATO:0000019 ! color pattern + +[Term] +id: PATO:0001534 +name: motley +def: "A color pattern inhering in a bearer by virtue of bearer's having 3 or more hues or degrees of saturations." [merriam-webster.:merriam-webster.] +subset: value_slim +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0001535 +name: dappled +def: "A color pattern inhering in a bearer by virtue of bearer's being marked with small spots, patches, or specks of hue or degree of saturation differing from that of the background." [merriam-webster.:merriam-webster.] +subset: value_slim +synonym: "speckled" RELATED [] +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0001536 +name: solubility +def: "A molecular quality that inheres in a molecular entity by virtue of the bearer's disposition to dissolve in a liquid." [edp:edp] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality + +[Term] +id: PATO:0001537 +name: soluble in +def: "A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid." [edp:edp] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "soluble" EXACT [] +is_a: PATO:0001536 ! solubility +disjoint_from: PATO:0001538 ! insoluble in +property_value: RO:0002604 PATO:0001538 + +[Term] +id: PATO:0001538 +name: insoluble in +def: "A solubility quality inhering in a substance by virtue of the bearer's inability of a substance to dissolve in a liquid." [edp:edp] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "insoluble" EXACT [] +is_a: PATO:0001536 ! solubility +property_value: RO:0002604 PATO:0001537 + +[Term] +id: PATO:0001539 +name: amylose composition +def: "A compositional quality inhering in an bearer by virtue of the bearer's quantities or relative ratios of amylose of the inhering entity." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +synonym: "amylose compositionality" EXACT [] +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001540 +name: glutinous +def: "An amylose composition quality inhering in an bearer by virtue of the bearer's having negligible or no amylose content." [TO:TO] +subset: value_slim +is_a: PATO:0001539 ! amylose composition + +[Term] +id: PATO:0001541 +name: non-glutinous +def: "An amylose composition quality inhering in an bearer by virtue of the bearer's having high amount of amylose content." [TO:TO] +subset: value_slim +is_a: PATO:0001539 ! amylose composition + +[Term] +id: PATO:0001542 +name: delayed phase +def: "A phase which starts later than natural start point." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0001543 +name: flexibility +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking." [merriam-webster:merriam-webster] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001546 ! quality of a solid + +[Term] +id: PATO:0001544 +name: flexible +def: "A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking." [merriam-webster:merriam-webster] +subset: disposition_slim +subset: value_slim +synonym: "bendy" EXACT [] +is_a: PATO:0001543 ! flexibility +property_value: RO:0002604 PATO:0001545 + +[Term] +id: PATO:0001545 +name: inflexible +def: "A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking." [merriam-webster:merriam-webster] +subset: disposition_slim +subset: value_slim +synonym: "stiff" EXACT [] +synonym: "stiffness" RELATED [] +is_a: PATO:0001543 ! flexibility +property_value: RO:0002604 PATO:0001544 + +[Term] +id: PATO:0001546 +name: quality of a solid +def: "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity characterized by particles arranged such that their shape and volume are relatively stable." [Chemistry:http\://chemistry.about.com/od/chemistryglossary/a/soliddefinition.htm] +subset: attribute_slim +synonym: "solidity" EXACT [] +is_a: PATO:0002198 ! quality of a substance + +[Term] +id: PATO:0001547 +name: quality of a gas +def: "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape." [Chemistry:http\://chemistry.about.com/od/chemistryglossary/a/gasdefinition.htm, PATOC:GVG] +subset: attribute_slim +synonym: "gaseous" EXACT [] +is_a: PATO:0002198 ! quality of a substance + +[Term] +id: PATO:0001548 +name: quality of a liquid +def: "A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape." [url:http\://www.chemistry-dictionary.com/definition/liquid.php] +subset: attribute_slim +synonym: "liquidity" EXACT [] +is_a: PATO:0002198 ! quality of a substance + +[Term] +id: PATO:0001549 +name: increased sensitivity toward +def: "A sensitivity toward an external stimulus which is higher than normal/average." [PATO:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high sensitivity toward" EXACT [] +synonym: "increased sensitivity" EXACT [] +is_a: PATO:0000516 ! sensitive toward +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001550 + +[Term] +id: PATO:0001550 +name: decreased sensitivity toward +def: "A sensitivity toward an external stimulus which is lower than normal/average." [PATO:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "decreased sensitivity" EXACT [] +synonym: "low sensitivity toward" EXACT [] +is_a: PATO:0000516 ! sensitive toward +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001549 + +[Term] +id: PATO:0001551 +name: increased sensitivity of a process +def: "A sensitivity of a process which is higher than normal or average." [PATO:GVG] +subset: relational_slim +subset: value_slim +synonym: "high sensitivity of occurrent" EXACT [] +synonym: "increased sensitivity of occurrent" EXACT [] +is_a: PATO:0001457 ! sensitivity of a process +is_a: PATO:0002304 ! increased process quality +property_value: RO:0002604 PATO:0001552 + +[Term] +id: PATO:0001552 +name: decreased sensitivity of a process +def: "A sensitivity of a process which is lower than normal or average." [PATO:GVG] +subset: relational_slim +subset: value_slim +synonym: "decreased sensitivity of occurrent" EXACT [] +synonym: "low sensitivity of occurrent" EXACT [] +is_a: PATO:0001457 ! sensitivity of a process +is_a: PATO:0002302 ! decreased process quality +property_value: RO:0002604 PATO:0001551 + +[Term] +id: PATO:0001553 +name: increased sensitivity of a process to oxygen +def: "A sensitivity of occurrent to oxygen which is higher than normal or average." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high sensitivity of occurrent to oxygen" EXACT [] +is_a: PATO:0001459 ! aerobic (for occurrence) +is_a: PATO:0001551 ! increased sensitivity of a process +property_value: RO:0002604 PATO:0001554 + +[Term] +id: PATO:0001554 +name: decreased sensitivity of a process to oxygen +def: "A sensitivity of a process to oxygen which is lower than normal or average." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low sensitivity of occurrent to oxygen" EXACT [] +is_a: PATO:0001459 ! aerobic (for occurrence) +is_a: PATO:0001552 ! decreased sensitivity of a process +property_value: RO:0002604 PATO:0001553 + +[Term] +id: PATO:0001555 +name: has number of +def: "The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts." [PATOC:CJM] +subset: attribute_slim +subset: relational_slim +synonym: "cardinality" RELATED [] +synonym: "extra or missing physical or functional parts" EXACT [] +synonym: "has or lacks parts of type" EXACT [] +synonym: "mereological quality" EXACT [] +synonym: "number" RELATED [] +synonym: "number of" EXACT [] +xref: OBO_REL:has_part +is_a: PATO:0001241 ! physical object quality +relationship: reciprocal_of PATO:0000070 ! amount + +[Term] +id: PATO:0001558 +name: lacking processual parts +def: "A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001564 ! extra or missing processual parts +relationship: reciprocal_of PATO:0000462 ! absent + +[Term] +id: PATO:0001559 +name: having extra function +def: "A functionality quality which is held by the bearer when the latter is able to perform additional or different function(s)." [PATO:MAH] +subset: disposition_slim +subset: value_slim +synonym: "having supernumerary functions" EXACT [] +is_a: PATO:0001509 ! functionality +is_a: PATO:0002305 ! increased object quality + +[Term] +id: PATO:0001561 +name: having extra processual parts +def: "A quality of a process inhering in a bearer by virtue of the bearer's having additional processual parts." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "having supernumerary processual parts" EXACT [] +is_a: PATO:0001564 ! extra or missing processual parts + +[Term] +id: PATO:0001562 +name: decreased mass +alt_id: PATO:0000579 +def: "A mass which is lower than normal or average." [PATO:GVG] +subset: value_slim +synonym: "low mass" EXACT [] +synonym: "small mass" EXACT [] +is_a: PATO:0000125 ! mass +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001563 + +[Term] +id: PATO:0001563 +name: increased mass +alt_id: PATO:0000578 +def: "A mass which is higher than normal or average." [PATO:GVG] +subset: value_slim +synonym: "high mass" EXACT [] +synonym: "large mass" EXACT [] +is_a: PATO:0000125 ! mass +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001562 + +[Term] +id: PATO:0001564 +name: extra or missing processual parts +def: "A quality of a process inhering in a bearer by virtue of the bearer's processual parts." [PATOC:GVG] +subset: relational_slim +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001566 +name: distributed +alt_id: PATO:0001513 +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +synonym: "diffuse" EXACT [] +synonym: "scattered" EXACT [] +is_a: PATO:0000060 ! spatial pattern +disjoint_from: PATO:0001629 ! aggregated +property_value: RO:0002604 PATO:0001567 + +[Term] +id: PATO:0001567 +name: undistributed +def: "A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +property_value: RO:0002604 PATO:0001566 + +[Term] +id: PATO:0001570 +name: having decreased processual parts +def: "A quality of a process inhering in a bearer by virtue of the bearer's having fewer processual parts." [PATO:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001564 ! extra or missing processual parts + +[Term] +id: PATO:0001571 +name: dilated +def: "A size quality inhering in a bearer by virtue of the bearer's being made wider or larger in all dimensions." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000586 ! increased size + +[Term] +id: PATO:0001573 +name: isometrical +def: "A symmetry quality inhering in a bearer by virtue of the bearer's having equal dimensions or measurements." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0000965 ! symmetry + +[Term] +id: PATO:0001574 +name: flow rate +def: "A physical quality inhering in a bearer by virtue of the bearer's motion characteristic." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001906 ! movement quality + +[Term] +id: PATO:0001575 +name: decreased pressure +def: "A pressure which is relatively low." [PATO:GVG] +subset: value_slim +synonym: "low pressure" EXACT [] +is_a: PATO:0001025 ! pressure +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001576 + +[Term] +id: PATO:0001576 +name: increased pressure +def: "A pressure which is relatively high." [PATO:GVG] +subset: value_slim +synonym: "high pressure" EXACT [] +is_a: PATO:0001025 ! pressure +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001575 + +[Term] +id: PATO:0001577 +name: increased permeability +def: "A permeability which is relatively high." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high permeability" EXACT [] +is_a: PATO:0000982 ! permeable +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001578 + +[Term] +id: PATO:0001578 +name: decreased permeability +def: "A permeability which is relatively low." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low permeability" EXACT [] +is_a: PATO:0000982 ! permeable +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001577 + +[Term] +id: PATO:0001579 +name: contractility +def: "A physical quality that is the ability to contract or shrink." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001580 +name: increased contractility +def: "A contractility which is relatively high." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high contractility" EXACT [] +is_a: PATO:0001690 ! contractile +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001581 + +[Term] +id: PATO:0001581 +name: decreased contractility +def: "A contractility which is relatively low." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low contractility" EXACT [] +is_a: PATO:0001690 ! contractile +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001580 + +[Term] +id: PATO:0001582 +name: obsolete relaxational quality +def: "A spatial quality inhering in an inactive muscle or muscle fibers by virtue of the bearer's exhibiting gradual lengthening." [WordNet:WordNet] +comment: GO has now relevant relation terms which should be used instead. +is_obsolete: true + +[Term] +id: PATO:0001583 +name: decreased variability +def: "A variability which is relatively low." [PATO:GVG] +subset: value_slim +synonym: "low variability" EXACT [] +is_a: PATO:0001227 ! variant +is_a: PATO:0002301 ! decreased quality +property_value: RO:0002604 PATO:0001584 + +[Term] +id: PATO:0001584 +name: increased variability +def: "A variability which is relatively high." [PATO:GVG] +subset: value_slim +synonym: "high variability" EXACT [] +is_a: PATO:0001227 ! variant +is_a: PATO:0002300 ! increased quality +property_value: RO:0002604 PATO:0001583 + +[Term] +id: PATO:0001585 +name: conductivity +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to transmit of an entity through a medium." [PATOC:GVG] +comment: Examples could be heat or electricity or sound. +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001586 +name: variability of rate +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits rate variation or change." [PATO:GVG] +subset: value_slim +is_a: PATO:0001303 ! variability +relationship: towards PATO:0000161 ! rate + +[Term] +id: PATO:0001587 +name: increased variability of rate +def: "A variability of rate which is relatively high." [PATO:GVG] +subset: value_slim +synonym: "high variability of rate" EXACT [] +is_a: PATO:0001586 ! variability of rate +is_a: PATO:0002300 ! increased quality +property_value: RO:0002604 PATO:0001588 + +[Term] +id: PATO:0001588 +name: decreased variability of rate +def: "A variability of rate which is relatively low." [PATO:GVG] +subset: value_slim +synonym: "low variability of rate" EXACT [] +is_a: PATO:0001586 ! variability of rate +is_a: PATO:0002301 ! decreased quality +property_value: RO:0002604 PATO:0001587 + +[Term] +id: PATO:0001589 +name: obsolete enhanced +def: "Increased, intensified." [PATOC:GVG] +comment: Obsoleted because it used to be a child of behavioral quality, which really meant increased magnitude of a given behavior. Now this can be done by using increased magnitude with another quality. +is_obsolete: true +consider: PATO:0002017 + +[Term] +id: PATO:0001590 +name: overlap with +def: "A structural quality inhering in a bearer by virtue of the bearer's coinciding spatially, partially or wholly with another entity." [PATO:GVG] +subset: relational_slim +subset: value_slim +synonym: "overlap" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001591 +name: curvature +def: "A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending." [WordNet:WordNet] +subset: attribute_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001592 +name: increased curvature +def: "A curvature which is relatively high." [PATO:GVG] +subset: value_slim +is_a: PATO:0000406 ! curved +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001593 + +[Term] +id: PATO:0001593 +name: decreased curvature +def: "A curvature which is relatively low." [PATO:GVG] +subset: value_slim +is_a: PATO:0000406 ! curved +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001592 + +[Term] +id: PATO:0001594 +name: arched +def: "A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch." [WordNet:WordNet] +subset: cell_quality +is_a: PATO:0001857 ! concave + +[Term] +id: PATO:0001595 +name: depth +def: "A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimenision." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0001596 +name: increased depth +alt_id: PATO:0001666 +def: "A depth quality which is relatively high." [PATO:GVG] +subset: value_slim +synonym: "deep" EXACT [] +is_a: PATO:0000586 ! increased size +is_a: PATO:0001595 ! depth +property_value: RO:0002604 PATO:0001472 + +[Term] +id: PATO:0001597 +name: everted +def: "An oriented quality inhering in a bearer by virtue of the bearer's being turned outward in placement." [thefreedictionary:thefreedictionary] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000614 ! oriented + +[Term] +id: PATO:0001598 +name: protruding +alt_id: PATO:0001644 +def: "A quality inhering in a bearer by virtue of the bearer's extending out above or beyond a surface or boundary." [WordNet:WordNet] +subset: value_slim +synonym: "protruding" EXACT [] +synonym: "relational protruding quality" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001599 +name: rotated +def: "An oriented quality inhering in a bearer by virtue of the bearer's being relocated around an axis." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "rotation" EXACT [] +is_a: PATO:0000614 ! oriented + +[Term] +id: PATO:0001600 +name: posteriorly rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the rear of organism." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001599 ! rotated + +[Term] +id: PATO:0001601 +name: anteriorly rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the front of an organism." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001599 ! rotated + +[Term] +id: PATO:0001602 +name: distended +def: "A size quality inhering in a bearer by virtue of the bearer's being abnormally expanded or increased in size." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +synonym: "expanded" RELATED [] +is_a: PATO:0000586 ! increased size + +[Term] +id: PATO:0001603 +name: increased life span +def: "A life span which is relatively high." [PATO:GVG] +synonym: "high life span" EXACT [] +is_a: PATO:0000050 ! life span +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001604 + +[Term] +id: PATO:0001604 +name: decreased life span +def: "A life span which is relatively low." [PATO:GVG] +synonym: "low life span" EXACT [] +is_a: PATO:0000050 ! life span +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001603 + +[Term] +id: PATO:0001605 +name: disheveled +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being in disarray; extremely disorderly." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0000330 ! irregular spatial pattern + +[Term] +id: PATO:0001606 +name: greasy +def: "A coating which is oily and slippery." [.answers.com:.answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002012 ! coating + +[Term] +id: PATO:0001607 +name: matted +def: "A tangled quality inhering in a bearer by virtue of the bearer's being not possible to unravel." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001846 ! tangled + +[Term] +id: PATO:0001608 +name: patchy +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being marked by, consisting of, or diversified with patches." [Merriam-Webster:Merriam-Webster] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000330 ! irregular spatial pattern + +[Term] +id: PATO:0001609 +name: sparse +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being scattered; spread irregularly, and at a distance from each other." [biology.lsu:biology.lsu] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0001611 +name: variability of color +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits color variation or change." [PATO:GVG] +subset: attribute_slim +is_a: PATO:0001303 ! variability +relationship: towards PATO:0000014 ! color + +[Term] +id: PATO:0001612 +name: increased variability of color +def: "A variability of color which is relatively high." [PATO:GVG] +subset: value_slim +synonym: "high variability of color" EXACT [] +is_a: PATO:0001615 ! variant color +is_a: PATO:0002300 ! increased quality +property_value: RO:0002604 PATO:0001613 + +[Term] +id: PATO:0001613 +name: decreased variability of color +def: "A variability of color which is relatively low." [PATO:GVG] +subset: value_slim +synonym: "low variability of color" EXACT [] +is_a: PATO:0001615 ! variant color +is_a: PATO:0002301 ! decreased quality +property_value: RO:0002604 PATO:0001612 + +[Term] +id: PATO:0001614 +name: invariant color +def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color." [PATO:GVG] +subset: value_slim +is_a: PATO:0001611 ! variability of color +property_value: RO:0002604 PATO:0001615 + +[Term] +id: PATO:0001615 +name: variant color +def: "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour." [PATO:GVG] +subset: value_slim +is_a: PATO:0001611 ! variability of color +property_value: RO:0002604 PATO:0001614 + +[Term] +id: PATO:0001617 +name: deformed +def: "A morphological quality inhering in a bearer by virtue of the bearer's being distorted in form." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +synonym: "disfigured" RELATED [] +synonym: "distorted" RELATED [] +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0001618 +name: increased tonicity +def: "A tonicity which is relatively high." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high tonicity" EXACT [] +is_a: PATO:0001439 ! tonicity +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001619 + +[Term] +id: PATO:0001619 +name: decreased tonicity +def: "A tonicity which is relatively low." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low tonicity" EXACT [] +is_a: PATO:0001439 ! tonicity +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001618 + +[Term] +id: PATO:0001620 +name: turgor +def: "A structural quality inhering in a cell or blood vessel or capillary by virtue of the bearer's being in a rigid state of fullness resulting from pressure of the contents against the wall or membrane." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001621 +name: decreased turgor +def: "A turgor which is relatively low." [PATO:GVG] +subset: cell_quality +subset: value_slim +synonym: "low turgor" EXACT [] +is_a: PATO:0001620 ! turgor +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001622 + +[Term] +id: PATO:0001622 +name: increased turgor +def: "A turgor which is relatively high." [PATO:GVG] +subset: cell_quality +subset: value_slim +synonym: "high turgor" EXACT [] +is_a: PATO:0001620 ! turgor +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001621 + +[Term] +id: PATO:0001623 +name: atrophied +def: "A size quality inhering in a bearer by virtue of a part or parts of the bearer's being decreased in size due to reduction in tissue mass through wasting." [Wiikipedia:Wasting, Wikipedia:Atrophy] +subset: mpath_slim +subset: value_slim +synonym: "atrophic" EXACT [] +is_a: PATO:0000587 ! decreased size + +[Term] +id: PATO:0001624 +name: decreased functionality +alt_id: PATO:0001556 +alt_id: PATO:0001568 +alt_id: PATO:0001641 +alt_id: PATO:0001642 +def: "A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s)." [PATO:MAH] +subset: disposition_slim +subset: value_slim +synonym: "dysfunction" BROAD [] +synonym: "dysfunctional" BROAD [] +synonym: "having decreased function" EXACT [] +synonym: "impaired" RELATED [] +synonym: "lacks function of type" EXACT [] +synonym: "low functionality" EXACT [] +synonym: "partial functionality" EXACT [] +is_a: PATO:0001510 ! functional +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001625 + +[Term] +id: PATO:0001625 +name: increased functionality +def: "A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s)." [PATO:MAH] +subset: disposition_slim +subset: value_slim +synonym: "high functionality" EXACT [] +is_a: PATO:0001510 ! functional +is_a: PATO:0001559 ! having extra function +property_value: RO:0002604 PATO:0001624 + +[Term] +id: PATO:0001626 +name: sufficiency +def: "A structural quality inhering in a bearer by virtue of whether the bearer has enough functionality." [PATO:GVG] +comment: This term and children should probably be obsoleted. +subset: attribute_slim +synonym: "adequacy" RELATED [] +is_a: PATO:0001509 ! functionality + +[Term] +id: PATO:0001627 +name: sufficient +def: "A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality." [PATO:GVG] +subset: value_slim +synonym: "adequate" RELATED [] +is_a: PATO:0001626 ! sufficiency +property_value: RO:0002604 PATO:0001628 + +[Term] +id: PATO:0001628 +name: insufficient +def: "A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality." [PATO:GVG] +subset: value_slim +synonym: "inadequate" RELATED [] +is_a: PATO:0001626 ! sufficiency +property_value: RO:0002604 PATO:0001627 + +[Term] +id: PATO:0001629 +name: aggregated +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +synonym: "clumped" EXACT [] +synonym: "clustered" EXACT [] +is_a: PATO:0000330 ! irregular spatial pattern + +[Term] +id: PATO:0001630 +name: dispersed +def: "A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001632 +name: anterior to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front of an organism relative to another entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "preceding" EXACT [] +synonym: "ventral_to" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001633 +name: posterior to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear of an organism relative to another entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "posterior (human torso)" EXACT [] +synonym: "superior (human head)" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001634 +name: necessity (continuant) +def: "A quality of a single physical entity inhering in a bearer by virtue of whether the bearer is essential or indispensable." [WordNet:WordNet] +subset: attribute_slim +is_a: PATO:0001509 ! functionality + +[Term] +id: PATO:0001635 +name: necessary (continuant) +def: "A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being essential or indispensable." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001634 ! necessity (continuant) +disjoint_from: PATO:0001636 ! unnecessary (continuant) +property_value: RO:0002604 PATO:0001636 + +[Term] +id: PATO:0001636 +name: unnecessary (continuant) +def: "A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001634 ! necessity (continuant) +property_value: RO:0002604 PATO:0001635 + +[Term] +id: PATO:0001637 +name: necessity of occurrent +def: "A quality of single process inhering in a bearer by virtue of whether the bearer is essential or indispensable." [PATO:GVG] +subset: attribute_slim +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001638 +name: necessary (occurrent) +def: "A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable." [PATO:GVG] +subset: value_slim +is_a: PATO:0001637 ! necessity of occurrent +property_value: RO:0002604 PATO:0001639 + +[Term] +id: PATO:0001639 +name: unnecessary (occurrent) +def: "A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable." [PATO:GVG] +subset: value_slim +is_a: PATO:0001637 ! necessity of occurrent +property_value: RO:0002604 PATO:0001638 + +[Term] +id: PATO:0001643 +name: stubby +def: "A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001645 +name: protruding into +def: "A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary into the surface or boundary of another entity." [PATOC:nc] +subset: relational_slim +subset: value_slim +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0001646 +name: protruding out of +def: "A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary and outwards in relation to the physical space occupied by another entity." [PATOC:nc] +subset: relational_slim +subset: value_slim +synonym: "exits through" RELATED [] +synonym: "exposed" RELATED [] +synonym: "extruding from" EXACT [] +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0001648 +name: circumference +def: "An 1-D extent quality which is equal to the length of the closed curve of a circle." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001711 ! perimeter + +[Term] +id: PATO:0001649 +name: curved lateral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001650 +name: increased resistance to +def: "A resistance to a stimulus which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high resistance to" EXACT [] +synonym: "increased resistance" EXACT [] +is_a: PATO:0001178 ! resistant to +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001651 + +[Term] +id: PATO:0001651 +name: decreased resistance to +def: "A resistance to a stimulus which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "decreased resistance" EXACT [] +synonym: "low resistance to" EXACT [] +is_a: PATO:0001178 ! resistant to +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001650 + +[Term] +id: PATO:0001652 +name: alignment +def: "A spatial quality inhering in a bearer by virtue of the bearer's spatial positioning with respect to an additional entity." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0000140 ! position +relationship: has_part PATO:0000133 ! orientation + +[Term] +id: PATO:0001653 +name: aligned with +def: "An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity." [PATO:GVG] +subset: relational_slim +subset: value_slim +synonym: "aligned" EXACT [] +synonym: "aligned to" RELATED [] +is_a: PATO:0001652 ! alignment +property_value: RO:0002604 PATO:0001654 + +[Term] +id: PATO:0001654 +name: misaligned with +def: "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "misaligned" EXACT [] +synonym: "unaligned with" EXACT [] +is_a: PATO:0001652 ! alignment +property_value: RO:0002604 PATO:0001653 + +[Term] +id: PATO:0001655 +name: osmolarity +def: "A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per liter of solution." [Wikipedia:http\://en.wikipedia.org/wiki/Osmolarity] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0000033 ! concentration of + +[Term] +id: PATO:0001656 +name: decreased osmolarity +def: "A osmolarity which is relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "low osmolarity" EXACT [] +is_a: PATO:0001655 ! osmolarity +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001657 + +[Term] +id: PATO:0001657 +name: increased osmolarity +def: "A osmolarity which is relatively high." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "high osmolarity" EXACT [] +is_a: PATO:0001655 ! osmolarity +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001656 + +[Term] +id: PATO:0001658 +name: dorsally rotated +def: "A rotatiotion quality inhering in a bearer by virtue of being rotated towards the back or upper surface of an organism." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001599 ! rotated + +[Term] +id: PATO:0001659 +name: ventrally rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the abdomen of an organism." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001599 ! rotated + +[Term] +id: PATO:0001660 +name: obsolete decreased action potential +def: "An action potential which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low action potential" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0001661 +name: obsolete increased action potential +def: "An action potential which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high action potential" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0001662 +name: fragility +def: "A structural quality inhering in a bearer by virtue of the bearer's disposition to being damaged or destroyed." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001663 +name: increased solubility +def: "A solubility which is relatively high." [PATO:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high solubility" EXACT [] +is_a: PATO:0001537 ! soluble in +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001664 + +[Term] +id: PATO:0001664 +name: decreased solubility +def: "A solubility which is relatively low." [PATO:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "low solubility" EXACT [] +is_a: PATO:0001537 ! soluble in +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001663 + +[Term] +id: PATO:0001665 +name: superficial +alt_id: PATO:0001471 +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being located near a surface." [Dictionary.com:Dictionary.com] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "superficial to" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001667 +name: attached to +def: "An attachment quality inhering in a bearer by virtue of the bearer's connection or association with another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "affixed to" RELATED [] +synonym: "attached" EXACT [] +is_a: PATO:0001435 ! attachment quality + +[Term] +id: PATO:0001668 +name: associated with +def: "A structural quality inhering in a bearer by virtue of the bearer's being in close proximity and physically interacting with another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "associated" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001669 +name: increased susceptibility toward +def: "A susceptibility toward an external stimulus which is higher than normal/average." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high susceptibility toward" EXACT [] +synonym: "increased susceptibility" EXACT [] +is_a: PATO:0001152 ! susceptible toward +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001670 + +[Term] +id: PATO:0001670 +name: decreased susceptibility toward +def: "A susceptibility toward an external stimulus which is lower than normal/average." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "decreased susceptibility" EXACT [] +synonym: "low susceptibility toward" EXACT [] +is_a: PATO:0001152 ! susceptible toward +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001669 + +[Term] +id: PATO:0001671 +name: increased distribution +def: "A distribution which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high distribution" EXACT [] +is_a: PATO:0001475 ! increased position +is_a: PATO:0001566 ! distributed +property_value: RO:0002604 PATO:0001672 + +[Term] +id: PATO:0001672 +name: decreased distribution +def: "A distribution which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low distribution" EXACT [] +is_a: PATO:0001476 ! decreased position +is_a: PATO:0001566 ! distributed +property_value: RO:0002604 PATO:0001671 + +[Term] +id: PATO:0001673 +name: cystic +def: "Structure quality that is the presence of closed epithelium bounded capsules containing one or more liquid or solid organism substances." [PATOC:MAH] +comment: Cystic is an abnormal condition. +subset: value_slim +synonym: "cysts" NARROW [] +is_a: PATO:0002014 ! structure, cavities + +[Term] +id: PATO:0001674 +name: catalytic (activity) concentration +def: "A concentration quality inhering in a bearer by virtue of the bearer's catalytic activity divided by the volume of the system." [IUPAC:IUPAC] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0000033 ! concentration of + +[Term] +id: PATO:0001675 +name: decreased efficiency +def: "An efficiency which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low efficiency" EXACT [] +is_a: PATO:0001678 ! efficient +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001676 + +[Term] +id: PATO:0001676 +name: increased efficiency +def: "An efficiency which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high efficiency" EXACT [] +is_a: PATO:0001678 ! efficient +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001675 + +[Term] +id: PATO:0001677 +name: inefficient +def: "An efficiency quality inhering in a bearer by virtue of the bearer's lacking efficiency." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001029 ! efficiency +disjoint_from: PATO:0001678 ! efficient +property_value: RO:0002604 PATO:0001678 + +[Term] +id: PATO:0001678 +name: efficient +def: "An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001029 ! efficiency +property_value: RO:0002604 PATO:0001677 + +[Term] +id: PATO:0001679 +name: specific volume +def: "A volume quality inhering in a mass of substance by virtue of the amount of 3-dimensional space it occupies." [Wikipedia:http\://en.wikipedia.org/wiki/Specific_volume] +comment: The reciprocal of density. +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000918 ! volume + +[Term] +id: PATO:0001680 +name: molar volume +def: "A volume quality inhering in a homogeneous substance containing 6.02 x 1023 atoms or molecules by virtue of the amount of 3-dimensional space it occupies." [Wikipedia:http\://en.wikipedia.org/wiki/Molar_volume] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000918 ! volume + +[Term] +id: PATO:0001681 +name: molar mass +def: "A physical quality that inheres in a homogeneous substance containing 6.02 x 1023 atoms or molecules." [Wikipedia:http\://en.wikipedia.org/wiki/Molar_mass] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000125 ! mass + +[Term] +id: PATO:0001682 +name: magnetism +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to exert an attractive or repulsive force on other entities." [Wikipedia:http\://en.wikipedia.org/wiki/Magnetism] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001683 +name: increased magnetism +def: "A magnetism which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high magnetism" EXACT [] +is_a: PATO:0001685 ! magnetic +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001684 + +[Term] +id: PATO:0001684 +name: decreased magnetism +def: "A magnetism which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low magnetism" EXACT [] +is_a: PATO:0001685 ! magnetic +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001683 + +[Term] +id: PATO:0001685 +name: magnetic +def: "A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001682 ! magnetism +disjoint_from: PATO:0001686 ! non-magnetic +property_value: RO:0002604 PATO:0001686 + +[Term] +id: PATO:0001686 +name: non-magnetic +def: "A magnetic quality inhering in a bearer by virtue of the bearer's inability to exert magnitism." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001682 ! magnetism +property_value: RO:0002604 PATO:0001685 + +[Term] +id: PATO:0001687 +name: elevation +def: "A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface." [Trailillustrated:Trailillustrated] +subset: attribute_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001688 +name: increased elevation +def: "An elevation which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "elevated" RELATED [] +synonym: "high elevation" EXACT [] +is_a: PATO:0001475 ! increased position +is_a: PATO:0001687 ! elevation +property_value: RO:0002604 PATO:0001689 + +[Term] +id: PATO:0001689 +name: decreased elevation +def: "An elevation which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low elevation" EXACT [] +is_a: PATO:0001476 ! decreased position +is_a: PATO:0001687 ! elevation +property_value: RO:0002604 PATO:0001688 + +[Term] +id: PATO:0001690 +name: contractile +def: "A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted." [PATOC:GVG] +comment: This refers to the disposition of the bearer. +subset: disposition_slim +subset: value_slim +is_a: PATO:0001579 ! contractility +disjoint_from: PATO:0001691 ! non-contractile +property_value: RO:0002604 PATO:0001691 + +[Term] +id: PATO:0001691 +name: non-contractile +def: "A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted." [PATOC:GVG] +comment: This refers to the disposition of the bearer. +subset: disposition_slim +subset: value_slim +is_a: PATO:0001579 ! contractility +property_value: RO:0002604 PATO:0001690 + +[Term] +id: PATO:0001693 +name: increased viscosity +def: "A viscosity which relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high viscosity" EXACT [] +is_a: PATO:0000998 ! viscous +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001694 + +[Term] +id: PATO:0001694 +name: decreased viscosity +def: "A viscosity which relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low viscosity" EXACT [] +is_a: PATO:0000998 ! viscous +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001693 + +[Term] +id: PATO:0001695 +name: increased fecundity +def: "A fecundity which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high fecundity" EXACT [] +is_a: PATO:0000273 ! fecundity +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001696 + +[Term] +id: PATO:0001696 +name: decreased fecundity +def: "A fecundity which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low fecundity" EXACT [] +is_a: PATO:0000273 ! fecundity +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001695 + +[Term] +id: PATO:0001697 +name: decreased photosensitivity +def: "A photosensitivity which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "low photosensitivity" EXACT [] +is_a: PATO:0000547 ! photosensitive +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001698 + +[Term] +id: PATO:0001698 +name: increased photosensitivity +def: "A photosensitivity which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high photosensitivity" EXACT [] +is_a: PATO:0000547 ! photosensitive +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001697 + +[Term] +id: PATO:0001699 +name: regular sleep pattern +def: "A sleep pattern which has regular start and/or end times." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000062 ! sleep pattern +property_value: RO:0002604 PATO:0001700 + +[Term] +id: PATO:0001700 +name: irregular sleep pattern +def: "A sleep pattern which has irregular start and/or end times." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000062 ! sleep pattern +property_value: RO:0002604 PATO:0001699 + +[Term] +id: PATO:0001701 +name: mature +def: "A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] +subset: value_slim +is_a: PATO:0000261 ! maturity +property_value: RO:0002604 PATO:0001501 + +[Term] +id: PATO:0001702 +name: saturated violet +def: "A color consisting of violet hue and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright violet" RELATED [] +is_a: PATO:0001424 ! violet + +[Term] +id: PATO:0001703 +name: desaturated violet +def: "A color consisting of violet hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale violet" EXACT [] +is_a: PATO:0001424 ! violet + +[Term] +id: PATO:0001704 +name: light violet +def: "A color consisting of violet hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001424 ! violet + +[Term] +id: PATO:0001705 +name: dark violet +def: "A color consisting of violet hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001424 ! violet + +[Term] +id: PATO:0001706 +name: behavioural inactive +def: "A behavioral quality inhering in a bearer by virtue of the bearer's disposition to lack activity." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002265 ! behavioural activity +disjoint_from: PATO:0001707 ! behavioural active +property_value: RO:0002604 PATO:0001707 + +[Term] +id: PATO:0001707 +name: behavioural active +def: "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002265 ! behavioural activity +property_value: RO:0002604 PATO:0001706 + +[Term] +id: PATO:0001708 +name: 1-D extent +def: "A size quality inhering in an bearer by virtue of the bearer's extension in one dimension." [PATOC:GVG] +subset: attribute_slim +synonym: "1-D size" EXACT [] +is_a: PATO:0000117 ! size + +[Term] +id: PATO:0001709 +name: 2-D extent +def: "A size quality inhering in an bearer by virtue of the bearer's extension in two dimensions." [PATOC:GVG] +subset: attribute_slim +synonym: "2-D size" EXACT [] +is_a: PATO:0000117 ! size + +[Term] +id: PATO:0001710 +name: 3-D extent +def: "A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions." [PATOC:GVG] +subset: attribute_slim +synonym: "3D size" EXACT [] +is_a: PATO:0000117 ! size + +[Term] +id: PATO:0001711 +name: perimeter +def: "An 1-D extent quality inhering in two-dimensional bearer by virtue of being equal to the distance around it." [Wikipedia:http\://en.wikipedia.org/wiki/Perimeter] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0001712 +name: increased perimeter +def: "A perimeter which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000573 ! increased length +is_a: PATO:0001711 ! perimeter +property_value: RO:0002604 PATO:0001713 + +[Term] +id: PATO:0001713 +name: decreased perimeter +def: "A perimeter which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000574 ! decreased length +is_a: PATO:0001711 ! perimeter +property_value: RO:0002604 PATO:0001712 + +[Term] +id: PATO:0001714 +name: increased diameter +def: "A diameter which is relatively large." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000573 ! increased length +is_a: PATO:0001334 ! diameter +property_value: RO:0002604 PATO:0001715 + +[Term] +id: PATO:0001715 +name: decreased diameter +def: "A diameter which is relatively small." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000574 ! decreased length +is_a: PATO:0001334 ! diameter +property_value: RO:0002604 PATO:0001714 + +[Term] +id: PATO:0001716 +name: non-fragile +def: "A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking." [thefreedictionary.com:thefreedictionary.com] +subset: attribute_slim +subset: disposition_slim +synonym: "resilient" RELATED [] +synonym: "strong" RELATED [] +synonym: "tough" RELATED [] +is_a: PATO:0001662 ! fragility +property_value: RO:0002604 PATO:0001362 + +[Term] +id: PATO:0001717 +name: radiation emitting intensity quality +def: "A radiation emitting quality which obtains by the intensity of the bearer emitted radiation." [PATOC:GVG] +is_a: PATO:0001299 ! radiation emitting quality + +[Term] +id: PATO:0001718 +name: luminance +def: "A quality that exists by virtue of the luminous intensity per unit area projected in a given direction." [Wikipedia:http\://en.wikipedia.org/wiki/Luminance] +is_a: PATO:0001296 ! luminous flux + +[Term] +id: PATO:0001719 +name: receptivity +def: "A behavioral quality which holds by virtue of whether the bearer exhibits the ability to receive another agentitive entity." [PATOC:cjm] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0001720 +name: female receptivity +def: "A behavioral quality which holds by virtue of extent of the receptiveness of a female to male advances." [GO:GO] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0001719 ! receptivity + +[Term] +id: PATO:0001721 +name: male receptivity +def: "A behavioral quality which holds by virtue of extent of the receptiveness of a male to female advances." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0001719 ! receptivity + +[Term] +id: PATO:0001723 +name: increased female receptivity +def: "A female receptivity which is relatively high." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "high female receptivity" EXACT [] +is_a: PATO:0001720 ! female receptivity +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001724 + +[Term] +id: PATO:0001724 +name: decreased female receptivity +def: "A female receptivity which is relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "low female receptivity" EXACT [] +is_a: PATO:0001720 ! female receptivity +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001723 + +[Term] +id: PATO:0001725 +name: increased male receptivity +def: "A male receptivity which is relatively high." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "high male receptivity" EXACT [] +is_a: PATO:0001721 ! male receptivity +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001726 + +[Term] +id: PATO:0001726 +name: decreased male receptivity +def: "A male receptivity which is relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "low male receptivity" EXACT [] +is_a: PATO:0001721 ! male receptivity +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001725 + +[Term] +id: PATO:0001727 +name: disposition +def: "A quality inhering in a bearer by virtue of the bearer's prevailing tendency, mood, or inclination." [Merriam-Webster:Merriam-Webster] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "tendency" RELATED [] +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001728 +name: multi-cellular organismal disposition +def: "A disposition inhering in a multi-cellular organism." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001727 ! disposition + +[Term] +id: PATO:0001729 +name: shedability +def: "An organismal quality inhering in a bearer by virtue of the bearer's disposition to lose an entitity by natural process." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0001730 +name: deciduous (generic) +def: "A quality inhering in a bearer by virtue of the bearer's disposition to shed body parts." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001729 ! shedability + +[Term] +id: PATO:0001731 +name: deciduous (plant) +def: "A quality inhering in a plant by virtue of the bearer's disposition to shed foliage." [PATOC:cjm] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001729 ! shedability + +[Term] +id: PATO:0001732 +name: non-deciduous (any body part) +def: "A quality inhering in a plant by virtue of the bearer's disposition to not shed any body part." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001729 ! shedability + +[Term] +id: PATO:0001733 +name: evergreen (plant) +def: "A quality inhering in a plant by virtue of the bearer's disposition to retain foliage." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001729 ! shedability + +[Term] +id: PATO:0001734 +name: semi-deciduous(plant) +def: "A quality inhering in a plant by virtue of the bearer's disposition to being between evergeen and deciduous." [PATOC:cjm] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001729 ! shedability + +[Term] +id: PATO:0001735 +name: liquid configuration +def: "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of liquids." [PATOC:GVG] +synonym: "liquid" EXACT [] +is_a: PATO:0001548 ! quality of a liquid + +[Term] +id: PATO:0001736 +name: solid configuration +def: "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of solids." [PATOC:GVG] +subset: value_slim +synonym: "solid" EXACT [] +is_a: PATO:0001546 ! quality of a solid + +[Term] +id: PATO:0001737 +name: gaseus configuration +def: "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of gases." [PATOC:GVG] +synonym: "gas" EXACT [] +is_a: PATO:0001547 ! quality of a gas + +[Term] +id: PATO:0001738 +name: dissociated from +def: "A structural quality inhering in a bearer by virtue of the bearer's lacking physically interaction with another entity." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "dissociated" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001739 +name: radiation quality +def: "A quality that inheres in an bearer by virtue of how that bearer interacts with radiation." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001740 +name: activity (of a radionuclide) +def: "A radiation quality inhering in a radioactive substance by virtue of its transformation (disintegration) rate." [PATOC:GVG] +subset: attribute_slim +synonym: "radioactivity" EXACT [] +is_a: PATO:0001739 ! radiation quality + +[Term] +id: PATO:0001741 +name: radioactive +def: "A radiation quality inhering in bearer by virtue of the bearer's exhibiting or being caused by radioactivity." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001740 ! activity (of a radionuclide) + +[Term] +id: PATO:0001742 +name: increased radioactivity +def: "A radioactivity which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "high radioactivity" EXACT [] +is_a: PATO:0001741 ! radioactive +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001743 + +[Term] +id: PATO:0001743 +name: decreased radioactivity +def: "A radioactivity which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "low radioactivity" EXACT [] +is_a: PATO:0001741 ! radioactive +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001742 + +[Term] +id: PATO:0001744 +name: radiation exposure +def: "A radiation quality inhering in a bearer by virtue of what the bearer receives as a result of being exposed to ionizing radiation." [hps:hps] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001739 ! radiation quality + +[Term] +id: PATO:0001745 +name: radiation absorbed dose +def: "A radiation exposure quality inhering in a substance by virtue of the radiation energy \"deposited\" in a kilogram of a substance." [arpansa:arpansa] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001744 ! radiation exposure + +[Term] +id: PATO:0001746 +name: radiation equivalent dose +def: "A radiation exposure quality inhering in a tissue by virtue of the relation between the absorbed dose to the effective biological damage of the radiation to that tissue." [arpansa:arpansa] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001744 ! radiation exposure + +[Term] +id: PATO:0001747 +name: radiation effective dose +def: "A radiation exposure quality inhering in an organ by virtue of the multiplication of an equivalent dose to that organ multiplied by the tissue weighting factor for that organ." [arpansa:arpansa] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001744 ! radiation exposure + +[Term] +id: PATO:0001748 +name: invaginated +def: "A shape quality in which a portion of the outermost boundary of an entity folds in space such that a portion that was originally convex is now concave." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001857 ! concave + +[Term] +id: PATO:0001749 +name: paedomorphic growth +def: "A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth." [PATOC:mh] +subset: value_slim +synonym: "hypoplastic growth" EXACT [] +synonym: "pedomorphic growth" EXACT [] +is_a: PATO:0001490 ! heterochronic growth +property_value: RO:0002604 PATO:0001752 + +[Term] +id: PATO:0001750 +name: postdisplaced growth +def: "A paedomorphic growth quality which is due to a delayed onset." [PATOC:mh] +subset: value_slim +is_a: PATO:0001749 ! paedomorphic growth + +[Term] +id: PATO:0001751 +name: progenetic growth +def: "A paedomorphic growth quality which is due to an ealier offset." [PATOC:mh] +subset: value_slim +is_a: PATO:0001749 ! paedomorphic growth + +[Term] +id: PATO:0001752 +name: peramorphic growth +def: "A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth." [PATOC:mh] +subset: attribute_slim +synonym: "hyperplastic growth" EXACT [] +is_a: PATO:0001490 ! heterochronic growth +property_value: RO:0002604 PATO:0001749 + +[Term] +id: PATO:0001753 +name: accelerated growth +def: "A peramorphic growth quality which is due to an increased rate." [PATOC:mh] +subset: value_slim +is_a: PATO:0001752 ! peramorphic growth + +[Term] +id: PATO:0001754 +name: predisplaced growth +def: "A peramorphic growth quality which is due to an earlier onset." [PATOC:mh] +subset: value_slim +synonym: "precocious growth" EXACT [] +is_a: PATO:0001752 ! peramorphic growth + +[Term] +id: PATO:0001755 +name: hypermorphic growth +def: "A peramorphic growth quality which is due to a delayed offset." [PATOC:mh] +subset: value_slim +is_a: PATO:0001752 ! peramorphic growth + +[Term] +id: PATO:0001756 +name: heat conductivity +def: "A conductivity quality inhering in a bearer by virtue of the bearer's disposition to spontaneous transfer of thermal energy from a region of higher temperature to a region of lower temperature." [Wikipedia:http\://en.wikipedia.org/wiki/Heat_conduction] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +synonym: "thermal conduction" EXACT [] +is_a: PATO:0001585 ! conductivity + +[Term] +id: PATO:0001757 +name: electrical conductivity +def: "A conductivity quality inhering in a bearer by virtue of the bearer's ability to convey electricity." [Wikipedia:http\://en.wikipedia.org/wiki/Electrical_conduction] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001585 ! conductivity + +[Term] +id: PATO:0001758 +name: nerve conductivity +def: "A conductivity quality inhering in motor and sensory nerves by virtue of the bearer's ability to convey electricity." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001757 ! electrical conductivity + +[Term] +id: PATO:0001759 +name: granular +def: "A composition quality inhering in a bearer by virtue of the bearer's containing granules." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001760 +name: female semi-fertile +subset: disposition_slim +subset: value_slim +is_a: PATO:0001767 ! semi-fertile +property_value: RO:0002604 PATO:0001763 + +[Term] +id: PATO:0001761 +name: male semi-fertile +subset: disposition_slim +subset: value_slim +is_a: PATO:0001767 ! semi-fertile +property_value: RO:0002604 PATO:0001762 + +[Term] +id: PATO:0001762 +name: male semi-sterile +subset: disposition_slim +subset: value_slim +is_a: PATO:0000279 ! male fertility +property_value: RO:0002604 PATO:0001761 + +[Term] +id: PATO:0001763 +name: female semi-sterile +subset: disposition_slim +subset: value_slim +is_a: PATO:0000277 ! female fertility +property_value: RO:0002604 PATO:0001760 + +[Term] +id: PATO:0001764 +name: increased age +def: "An age which is high relative to the normal or average." [PATOC:GVG] +subset: value_slim +synonym: "high age" EXACT [] +is_a: PATO:0000011 ! age +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001765 + +[Term] +id: PATO:0001765 +name: decreased age +def: "An age which is low relative to the normal or average." [PATOC:GVG] +subset: value_slim +synonym: "low age" EXACT [] +is_a: PATO:0000011 ! age +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001764 + +[Term] +id: PATO:0001766 +name: obsolete cellular polarity +def: "A cellular quality inhering in a cell by virtue of its anisotropic intracellular organization." [PATOC:GVG] +subset: attribute_slim +subset: cell_quality +is_obsolete: true +consider: PATO:0001769 + +[Term] +id: PATO:0001767 +name: semi-fertile +subset: disposition_slim +subset: value_slim +is_a: PATO:0000274 ! fertility + +[Term] +id: PATO:0001768 +name: semi-lethal (sensu genetics) +def: "A viability quality inhering in a bearer or a population by virtue of some of it's members' inability to survive to reproduce." [PATOC:CVC] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001769 +name: positional polarity +def: "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an axis." [PATOC:MAH] +subset: attribute_slim +synonym: "cellular polarity" RELATED [PATOC:MAH] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001770 +name: semi-viable +def: "A viability quality inhering in a population by virtue of some of it's members' ability to survive." [PATOC:CVC] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001772 +name: surrounding +def: "A spatial quality inhering in a bearer by virtue of the bearer's being extended on all sides of another entity simultaneously." [thefreedictionary.com:thefreedictionary.com] +comment: Nedd to add reciprocal of relationship to 'surrounded by' PATO:0005016. +subset: relational_slim +subset: value_slim +synonym: "encircling" EXACT [] +synonym: "enclosing" EXACT [] +synonym: "wrapping" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001773 +name: monophasic +def: "A quality inhering in a bearer by virtue of the bearer's having only one phase or stage." [hefreedictionary.com:hefreedictionary.com] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0001774 +name: polyphasic +def: "A quality inhering in a bearer by virtue of the bearer's having or existing in many phases." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0001775 +name: dorsal-ventral polarity +def: "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the dorsal-ventral axis." [PATOC:MAH] +subset: value_slim +is_a: PATO:0001769 ! positional polarity + +[Term] +id: PATO:0001776 +name: increased flexibility +def: "A flexibility which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high flexibility" EXACT [] +is_a: PATO:0001544 ! flexible +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001777 + +[Term] +id: PATO:0001777 +name: decreased flexibility +def: "A flexibility which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low flexibility" EXACT [] +is_a: PATO:0001544 ! flexible +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001776 + +[Term] +id: PATO:0001778 +name: increased strength +def: "A strength which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high strength" EXACT [] +is_a: PATO:0001230 ! strength +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001779 + +[Term] +id: PATO:0001779 +name: decreased strength +def: "A strength which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "weak" EXACT [] +is_a: PATO:0001230 ! strength +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001778 + +[Term] +id: PATO:0001780 +name: dystrophic +def: "A size quality inhering in a bearer by virtue of the bearer's being abnormally developed, usually due to malnutrition." [Wiikipedia:Wiikipedia] +subset: mpath_slim +subset: value_slim +synonym: "dystrophied" EXACT [] +synonym: "dystrophy" RELATED [] +is_a: PATO:0000587 ! decreased size + +[Term] +id: PATO:0001781 +name: irregular thickness +def: "A thickness quality which lacks pattern." [PATOC:GVG] +is_a: PATO:0000915 ! thickness + +[Term] +id: PATO:0001782 +name: increased intensity +def: "An intensity which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high intensity" EXACT [] +is_a: PATO:0000049 ! intensity +is_a: PATO:0002300 ! increased quality +property_value: RO:0002604 PATO:0001783 + +[Term] +id: PATO:0001783 +name: decreased intensity +def: "An intensity which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low intensity" EXACT [] +is_a: PATO:0000049 ! intensity +is_a: PATO:0002301 ! decreased quality +property_value: RO:0002604 PATO:0001782 + +[Term] +id: PATO:0001784 +name: bifurcated +alt_id: PATO:0001572 +def: "A branched quality inhering in a bearer by virtue of the bearer's being divided into two branches." [thefreedictionary.com:thefreedictionary.com] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "bifid" EXACT [] +synonym: "forked" RELATED [] +is_a: PATO:0000402 ! branched +is_a: PATO:0001786 ! split + +[Term] +id: PATO:0001785 +name: splayed +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outward." [PATOC:GVG] +comment: TODO: obsolete, definition too ambiguous. +subset: cell_quality +subset: value_slim +synonym: "flared" EXACT [] +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001786 +name: split +def: "A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions." [die.net:die.net] +subset: mpath_slim +subset: value_slim +synonym: "clefted" EXACT [] +synonym: "divided" RELATED [] +synonym: "forked" RELATED [] +synonym: "septate" NARROW [] +synonym: "subdivided" RELATED [] +is_a: PATO:0000052 ! shape +disjoint_from: PATO:0002034 ! undivided + +[Term] +id: PATO:0001787 +name: rotational curvature +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001591 ! curvature + +[Term] +id: PATO:0001788 +name: increased mass density +def: "A density which is higher relative to the normal or average." [PATOC:GVG] +subset: value_slim +synonym: "high density" EXACT [] +is_a: PATO:0001164 ! dense +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001790 + +[Term] +id: PATO:0001789 +name: domed +def: "A curvature quality inhering in a bearer by virtue of the bearer's having a shape resembling a dome." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001790 +name: decreased mass density +def: "A density which is lower relative to the normal or average." [PATOC:GVG] +subset: value_slim +synonym: "low density" EXACT [] +is_a: PATO:0001164 ! dense +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001788 + +[Term] +id: PATO:0001791 +name: multi-localised +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being confined or restricted to multiple locations." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "multi-focal" EXACT [] +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0001792 +name: left side of +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located on left side of from the a another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001793 +name: right side of +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located on right side of a another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001794 +name: coiling +def: "A shape quality inhering in a bearer by virtue of the bearer's being wound in a continuous series of loops." [Online_Dictionary:Online_Dictionary] +subset: attribute_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001795 +name: increased coiling +def: "A coiling which is relatively high." [PATOC:GVG] +subset: cell_quality +subset: value_slim +synonym: "high coiling" EXACT [] +is_a: PATO:0000404 ! coiled +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001796 + +[Term] +id: PATO:0001796 +name: decreased coiling +def: "A coiling which is relatively low." [PATOC:GVG] +subset: cell_quality +subset: value_slim +synonym: "low coiling" EXACT [] +is_a: PATO:0000404 ! coiled +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001795 + +[Term] +id: PATO:0001798 +name: kinked +def: "A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length." [thefreedictionary.com:thefreedictionary.com] +subset: cell_quality +subset: value_slim +synonym: "tightly curled" RELATED [] +synonym: "twisted" RELATED [] +is_a: PATO:0000617 ! bent + +[Term] +id: PATO:0001799 +name: ruffled +def: "A shape quality inhering in a bearer by virtue of the bearer's exhibiting disturbance of its smoothness or regularity." [.thefreedictionary.com:.thefreedictionary.com] +subset: cell_quality +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001800 +name: water composition +def: "A composition quality inhering in an bearer by virtue of the quantities or relative ratios of water of the inhering entity." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001801 +name: decreased water composition +def: "A composition quality inhering in an bearer by virtue of the reduction in amount of water the bearer contains." [Wikipedia:http\://en.wikipedia.org/wiki/Dehydrated] +subset: value_slim +synonym: "dehydrated" EXACT [] +synonym: "dry" RELATED [] +is_a: PATO:0001800 ! water composition +is_a: PATO:0002303 ! decreased object quality + +[Term] +id: PATO:0001802 +name: loose +def: "A pattern quality inhering in a bearer by virtue of the bearer's not being compact or dense in arrangement." [answers.com:answers.com] +subset: value_slim +is_a: PATO:0000330 ! irregular spatial pattern + +[Term] +id: PATO:0001803 +name: phototoxic +def: "A photosensitivity quality inhering in a bearer by virtue of the bearer's disposition to being susceptible to damage by light." [answers.com:answers.com] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000927 ! photosensitivity + +[Term] +id: PATO:0001804 +name: scaly +def: "A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with scales." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "squamous" RELATED [] +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0001805 +name: flaky +def: "A texture quality inhering in a bearer by virtue of the bearer's formed or tending to form flakes or thin, crisp fragments." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0001806 +name: sensitivity to irradiation +def: "A sensitivity quality inhering in a bearer by virtue of the bearer's exposure to radiation." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000085 ! sensitivity toward + +[Term] +id: PATO:0001807 +name: decreased sensitivity to irradiation +def: "A sensitivity to irradiation which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low sensitivity to irradiation" EXACT [] +is_a: PATO:0001806 ! sensitivity to irradiation +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001808 + +[Term] +id: PATO:0001808 +name: increased sensitivity to irradiation +def: "A sensitivity to irradiation which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high sensitivity to irradiation" EXACT [] +is_a: PATO:0001806 ! sensitivity to irradiation +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001807 + +[Term] +id: PATO:0001809 +name: tight +def: "A pattern quality inhering in a bearer by virtue of the bearer's being compact or dense in arrangement." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000440 ! regular spatial pattern + +[Term] +id: PATO:0001810 +name: wrinkled +def: "A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by one or more creases in a normally smooth surface." [url:http\://www.thefreedictionary.com/wrinkled] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002255 ! grooved + +[Term] +id: PATO:0001811 +name: obsolete increased relaxation +def: "A relaxation which is relatively high." [PATOC:GVG] +comment: GO has now relevant relation terms which should be used instead. +subset: value_slim +synonym: "high relaxation" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0001812 +name: obsolete decreased relaxation +def: "A relaxation which is relatively low." [PATOC:GVG] +comment: GO has now relevant relation terms which should be used instead. +subset: value_slim +synonym: "low relaxation" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0001813 +name: atonicity +def: "A structural quality inhering in a bearer by virtue of the bearer's lack elastic tension that facilitate response to stimuli." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001439 ! tonicity + +[Term] +id: PATO:0001814 +name: dystonicity +def: "A structural quality inhering in a bearer by virtue of the bearer's impaired elastic tension that facilitate response to stimuli." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001439 ! tonicity + +[Term] +id: PATO:0001815 +name: fatigability +def: "A strength quality inhering in a bearer by virtue of the bearer's disposition to lose strength." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001230 ! strength + +[Term] +id: PATO:0001816 +name: increased fatigability +def: "A fatigability which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high fatigability" EXACT [] +is_a: PATO:0001779 ! decreased strength +is_a: PATO:0001815 ! fatigability +property_value: RO:0002604 PATO:0001817 + +[Term] +id: PATO:0001817 +name: decreased fatigability +def: "A fatigability which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low fatigability" EXACT [] +is_a: PATO:0001778 ! increased strength +is_a: PATO:0001815 ! fatigability +property_value: RO:0002604 PATO:0001816 + +[Term] +id: PATO:0001818 +name: progressive +def: "A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time." [PATOC:GVG] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000057 ! occurrence +property_value: RO:0002604 PATO:0002026 + +[Term] +id: PATO:0001819 +name: atretic +def: "A morphological quality inhering in a bearer by virtue of the bearer's absence or closure of a normal body orifice or tubular passage." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "atresia" EXACT [] +is_a: PATO:0000608 ! closed + +[Term] +id: PATO:0001821 +name: imperforate +def: "A structural quality inhering in a bearer by virtue of the bearer's having no opening." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +synonym: "unperforated" EXACT [] +is_a: PATO:0002014 ! structure, cavities +property_value: RO:0002604 PATO:0002112 + +[Term] +id: PATO:0001822 +name: wetness +def: "A quality inhering in a bearer by virtue of whether the bearer's being covered by a liquid." [wordreference.com:wordreference.com] +subset: attribute_slim +subset: mpath_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001823 +name: wet +def: "A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001822 ! wetness +disjoint_from: PATO:0001824 ! dry +property_value: RO:0002604 PATO:0001824 + +[Term] +id: PATO:0001824 +name: dry +def: "A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001822 ! wetness +property_value: RO:0002604 PATO:0001823 + +[Term] +id: PATO:0001825 +name: increased wetness +def: "A wetness quality that is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001823 ! wet +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001826 + +[Term] +id: PATO:0001826 +name: decreased wetness +def: "A wetness quality that is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low wetness" EXACT [] +is_a: PATO:0001823 ! wet +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001825 + +[Term] +id: PATO:0001827 +name: pseudohermaphrodite +def: "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of one sex and external sexual characteristics of the other sex." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001894 ! phenotypic sex + +[Term] +id: PATO:0001828 +name: male pseudohermaphrodite +def: "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of male and external sexual characteristics of female." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001827 ! pseudohermaphrodite + +[Term] +id: PATO:0001829 +name: female pseudohermaphrodite +def: "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of female and external sexual characteristics of male." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001827 ! pseudohermaphrodite + +[Term] +id: PATO:0001830 +name: decreased female fertility +def: "A female fertility which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low female fertility" EXACT [] +is_a: PATO:0000888 ! female fertile +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001831 + +[Term] +id: PATO:0001831 +name: increased female fertility +def: "A female fertility which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high female fertility" EXACT [] +is_a: PATO:0000888 ! female fertile +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001830 + +[Term] +id: PATO:0001832 +name: increased male fertility +def: "A male fertility which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high male fertility" EXACT [] +is_a: PATO:0000891 ! male fertile +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001833 + +[Term] +id: PATO:0001833 +name: decreased male fertility +def: "A male fertility which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low male fertility" EXACT [] +is_a: PATO:0000891 ! male fertile +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001832 + +[Term] +id: PATO:0001834 +name: decreased fertility +def: "A fertility which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low fertility" EXACT [] +is_a: PATO:0000955 ! fertile +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001835 + +[Term] +id: PATO:0001835 +name: increased fertility +def: "A fertility which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high fertility" EXACT [] +is_a: PATO:0000955 ! fertile +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001834 + +[Term] +id: PATO:0001836 +name: congested +def: "A structural quality inhering in a bearer with some kind of aperture or opening that is blocked or clogged." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001838 +name: decreased fluid flow +def: "A flow that is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low flow" EXACT [] +is_a: PATO:0002243 ! fluid flow rate +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001839 + +[Term] +id: PATO:0001839 +name: increased fluid flow +def: "A fluid flow that is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high flow" EXACT [] +is_a: PATO:0002243 ! fluid flow rate +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001838 + +[Term] +id: PATO:0001841 +name: remittent intensity +def: "An intensity which is characterized by temporary abatement in severity." [answers.com:answers.com] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000049 ! intensity + +[Term] +id: PATO:0001842 +name: acidity +def: "A concentration quality inhering in a bearer by virtue of the bearer's containing acid (hydrogen ions)." [biology-online:biology-online] +subset: attribute_slim +subset: scalar_slim +synonym: "pH" EXACT [] +is_a: PATO:0000033 ! concentration of + +[Term] +id: PATO:0001843 +name: decreased acidity +def: "An acidity which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low acidity" EXACT [] +is_a: PATO:0001842 ! acidity +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001844 + +[Term] +id: PATO:0001844 +name: increased acidity +def: "An acidity which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high acidity" EXACT [] +is_a: PATO:0001842 ! acidity +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001843 + +[Term] +id: PATO:0001845 +name: irregular rhythm +def: "A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm lacking pattern." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000078 ! rhythm quality + +[Term] +id: PATO:0001846 +name: tangled +def: "A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001847 +name: constricted +alt_id: PATO:0001837 +def: "A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically." [WordNet:WordNet] +subset: value_slim +synonym: "stenosis" EXACT [] +synonym: "stenotic" EXACT [] +synonym: "stricture" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001848 +name: asymmetrically curved +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved asymmetrically." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001849 +name: abrased +def: "A texture quality inhering in a bearer by virtue of a portion of the bearer's surface being scraped away." [answers.com:answers.com] +subset: value_slim +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0001850 +name: scarred +def: "A structural quality inhering in a bearer by virtue of the bearer's being fibrous tissue that replaces normal tissue destroyed by injury or disease." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001851 +name: swollen +def: "A structure quality inhering in a bearer by virtue of the bearer's exhibiting transient abnormal enlargement, not due to cell proliferation." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +synonym: "swelling" NARROW [] +is_a: PATO:0000141 ! structure +relationship: has_part PATO:0000586 ! increased size +relationship: has_part PATO:0001598 ! protruding + +[Term] +id: PATO:0001852 +name: dislocated +alt_id: PATO:0001479 +alt_id: PATO:0002158 +alt_id: PATO:0002159 +def: "A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +synonym: "dislocation" EXACT [] +synonym: "luxated" EXACT [] +synonym: "luxation" EXACT [] +synonym: "relational dislocated quality" EXACT [] +is_a: PATO:0002181 ! displaced + +[Term] +id: PATO:0001853 +name: hydrocephalic +def: "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of cerebral spinal fluid." [PATOC:mh] +subset: value_slim +is_a: PATO:0001450 ! edematous + +[Term] +id: PATO:0001854 +name: vertical +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being situated at right angles to the horizon." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0001855 +name: horizontal +def: "A positional quality inhering in a bearer by virtue of the bearer's being in the plane of the horizon." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001856 +name: introverted +def: "An oriented quality inhering in a bearer by virtue of the bearer's being turned inward upon itself." [die.net:die.net] +comment: For example, a tubular organ or part. +subset: value_slim +is_a: PATO:0000614 ! oriented + +[Term] +id: PATO:0001857 +name: concave +def: "A shape quality in a bearer by virtue of the bearer's curving inward." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0002005 ! concavity +property_value: RO:0002604 PATO:0001355 + +[Term] +id: PATO:0001858 +name: partially paralysed +def: "A functionality quality inhering in a bearer by virtue of being not completely paralysed." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002076 ! movement behavioral quality + +[Term] +id: PATO:0001859 +name: increased coordination +def: "A coordination which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high coordination" EXACT [] +is_a: PATO:0000769 ! coordinated +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001860 + +[Term] +id: PATO:0001860 +name: decreased coordination +def: "A coordination which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low coordination" EXACT [] +is_a: PATO:0000769 ! coordinated +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001859 + +[Term] +id: PATO:0001861 +name: fasciculated +def: "A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "fascicled" EXACT [] +is_a: PATO:0002013 ! fasciculation +disjoint_from: PATO:0001959 ! defasciculated +property_value: RO:0002604 PATO:0001959 + +[Term] +id: PATO:0001862 +name: lack of fertility in offspring +def: "A fertility quality inhering in a bearer by virtue of the bearer's disposition to make its offspring sterile." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "grandchildless" RELATED [] +is_a: PATO:0000274 ! fertility + +[Term] +id: PATO:0001863 +name: chronic +def: "A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration." [PATOC:cjm] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001309 ! duration +property_value: RO:0002604 PATO:0000389 + +[Term] +id: PATO:0001865 +name: spheroid +alt_id: PATO:0001864 +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. Includes spheres and oblate/prolate spheroids." [Wikipedia:http\://en.wikipedia.org/wiki/Spheroid] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "sphericality" RELATED [] +is_a: PATO:0002007 ! convex 3-D shape + +[Term] +id: PATO:0001866 +name: prolate +def: "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a polar diameter longer than its equatorial diameter." [Wikipedia:http\://en.wikipedia.org/wiki/Prolate] +subset: cell_quality +subset: value_slim +synonym: "prolate spheroid" RELATED [] +xref: Image:http\://upload.wikimedia.org/wikipedia/commons/8/88/ProlateSpheroid.png +is_a: PATO:0001865 ! spheroid + +[Term] +id: PATO:0001867 +name: rectangular +def: "A shape quality inhering in a bearer by virtue of it being a quadrilateral polygon in which all four angles are right angles." [Wikipedia:http\://en.wikipedia.org/wiki/Rectangular] +subset: cell_quality +subset: value_slim +xref: Image:http\://upload.wikimedia.org/wikipedia/en/e/ee/Shaperec.svg +is_a: PATO:0002317 ! parallelogram + +[Term] +id: PATO:0001868 +name: autofluorescence +def: "A fluorescence quality inhering in a bearer by virtue of the bearer's exhibiting fluorescence which is self-induced." [PATOC:mb] +subset: attribute_slim +is_a: PATO:0000018 ! fluorescence + +[Term] +id: PATO:0001869 +name: pathological +def: "A quality inhering in a bearer by virtue of the bearer's being abnormal and having a destructive effect on living tissue." [PATOC:cjm] +subset: abnormal_slim +subset: value_slim +is_a: PATO:0000460 ! abnormal + +[Term] +id: PATO:0001870 +name: crescent-shaped +def: "A shape quality inhering in a circular disk by virtue of the bearer's having a segment of another circle removed from its edge, so that what remains is a shape enclosed by two circular arcs of different diameters which intersect at two points (usually in such a manner that the enclosed shape does not include the center of the original circle)." [Wikipedia:http\://en.wikipedia.org/wiki/Crescent] +subset: cell_quality +subset: value_slim +synonym: "bow-shaped" RELATED [] +synonym: "crescentic" EXACT [] +synonym: "lunate" RELATED [] +xref: Image:http\://upload.wikimedia.org/wikipedia/commons/7/74/Crescent.svg +is_a: PATO:0002006 ! 2-D shape + +[Term] +id: PATO:0001871 +name: reniform +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having the shape of a kidney." [ISBN:0881923214] +subset: value_slim +synonym: "bean shaped" RELATED [] +synonym: "kidney-shaped" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001872 +name: cuboid +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resemblance to a cube (a 3-D shape with a square cross section)." [PATOC:MAH] +subset: cell_quality +subset: value_slim +synonym: "block-like" RELATED [] +synonym: "cuboidal" EXACT [] +is_a: PATO:0002007 ! convex 3-D shape +relationship: has_cross_section PATO:0000413 ! square + +[Term] +id: PATO:0001873 +name: cylindrical +alt_id: PATO:0001203 +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a consistently-sized round cross section." [PATOC:MAH] +subset: cell_quality +subset: value_slim +synonym: "rod-like" EXACT [] +synonym: "rod-shaped" EXACT [] +synonym: "tubulate" NARROW [] +is_a: PATO:0002007 ! convex 3-D shape +relationship: has_cross_section PATO:0000411 ! circular + +[Term] +id: PATO:0001874 +name: discoid +def: "A shape quality inhering in a bearer by virtue of the bearer's being cylindrical, in which the height is less than the diameter." [PATOC:cjm] +subset: cell_quality +subset: value_slim +synonym: "disc-shaped" EXACT [] +synonym: "disk-shaped" EXACT [] +is_a: PATO:0001873 ! cylindrical + +[Term] +id: PATO:0001875 +name: triangular +def: "A shape quality inhering in a bearer by virtue of the bearer's having three angles." [wordreference:wordreference] +subset: cell_quality +subset: value_slim +synonym: "delta shaped" RELATED [] +synonym: "deltoid" EXACT [] +synonym: "triangle" RELATED [] +synonym: "triangle-shaped" RELATED [] +is_a: PATO:0002006 ! 2-D shape + +[Term] +id: PATO:0001876 +name: dumbbell-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two parts, roughly spherical and of equal size, connected by a bar." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001877 +name: lanceolate +def: "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle; attached at the broad end." [PATOC:GVG] +subset: cell_quality +subset: value_slim +synonym: "spear-shaped" EXACT [] +is_a: PATO:0001419 ! sharp + +[Term] +id: PATO:0001878 +name: sigmoid +def: "A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped." [PATOC:CJM] +subset: cell_quality +subset: value_slim +synonym: "S-shaped" EXACT [] +synonym: "sigmoidal" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001879 +name: U-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter U." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +synonym: "horseshoe" NARROW [] +synonym: "horseshoe shaped" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001880 +name: caudate +def: "A quality inhering in a bearer by virtue of the bearer's having a tail or tail-like projection." [PATOC:cjm] +subset: value_slim +synonym: "caudal" EXACT [] +synonym: "tailed" RELATED [] +is_a: PATO:0000623 ! exserted + +[Term] +id: PATO:0001881 +name: arrow-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's forming two equal obtuse triangles with a short side in common." [ISBN:0881923214, RKC:RKC] +comment: Gradually enlarged at the base, like the head of an arrow. +subset: cell_quality +subset: value_slim +synonym: "sagittate" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001882 +name: limaciform +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a slug." [PATOC:CJM] +subset: cell_quality +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001883 +name: clavate +alt_id: PATO:0001797 +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's gradually becoming thicker towards the end." [MP:0000576] +subset: value_slim +synonym: "club-like" EXACT [] +synonym: "club-shaped" EXACT [] +synonym: "clubbed" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001884 +name: hydrophobicity +def: "A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001018 ! physical quality +disjoint_from: PATO:0001886 ! hydrophilicity +property_value: RO:0002604 PATO:0001886 + +[Term] +id: PATO:0001885 +name: hydrophobic +def: "A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water." [WordNet:WordNet] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001884 ! hydrophobicity +property_value: RO:0002604 PATO:0001887 + +[Term] +id: PATO:0001886 +name: hydrophilicity +def: "A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water." [answers.com:answers.com] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001018 ! physical quality +property_value: RO:0002604 PATO:0001884 + +[Term] +id: PATO:0001887 +name: hydrophilic +def: "A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water." [WordNet:WordNet] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001886 ! hydrophilicity +property_value: RO:0002604 PATO:0001885 + +[Term] +id: PATO:0001888 +name: miscibility +def: "A quality of a liquid inhering in a bearer by virtue of the bearer's ability to mix with (dissolve in) another liquid." [Chemicool:Chemicool] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001548 ! quality of a liquid + +[Term] +id: PATO:0001889 +name: scalloped +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having the border, edge, or outline cut into a series of segments of circles resembling a scallop-shell." [Oxford:EnglishDictionary] +subset: cell_quality +subset: value_slim +synonym: "crenate" EXACT [] +synonym: "crenulate" EXACT [] +is_a: PATO:0001976 ! serration + +[Term] +id: PATO:0001890 +name: tripartite +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being divided into three branches." [InfoVisual:InfoVisual] +subset: cell_quality +subset: value_slim +synonym: "trifurcate" EXACT [] +is_a: PATO:0000402 ! branched +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001891 +name: ovate +def: "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; egg-shaped." [PATOC:mc] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "eccentric" RELATED [] +synonym: "egg-shaped" EXACT [] +synonym: "oval" EXACT [] +synonym: "ovoid" EXACT [] +is_a: PATO:0001865 ! spheroid +relationship: has_cross_section PATO:0000946 ! oblong + +[Term] +id: PATO:0001892 +name: decreased odor +def: "An odor quality of having decreased odor." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001331 ! odorous +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001893 + +[Term] +id: PATO:0001893 +name: increased odor +def: "An odor quality of having increased odor." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001331 ! odorous +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001892 + +[Term] +id: PATO:0001894 +name: phenotypic sex +def: "An organismal quality inhering in a bearer by virtue of the bearer's physical expression of sexual characteristics." [] +subset: attribute_slim +is_a: PATO:0000047 ! biological sex + +[Term] +id: PATO:0001895 +name: mating type +def: "A biological sex quality inhering in an individual or a population that undergo sexual reproduction." [wikipedia:wikipedia] +subset: attribute_slim +is_a: PATO:0000047 ! biological sex + +[Term] +id: PATO:0001896 +name: unlumenized +def: "A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances." [PATOC:MAH] +subset: value_slim +is_a: PATO:0002014 ! structure, cavities +property_value: RO:0002604 PATO:0001897 + +[Term] +id: PATO:0001897 +name: lumenized +def: "A structure quality inhering in a bearer by virtue of the bearer's having a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances." [PATOC:MAH] +comment: See GO term: GO:0031974 membrane-enclosed lumen [DEF:"The enclosed volume within a sealed membrane or between two sealed membranes"]. +subset: value_slim +is_a: PATO:0002014 ! structure, cavities +property_value: RO:0002604 PATO:0001896 + +[Term] +id: PATO:0001898 +name: increased circumference +def: "A circumference which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001648 ! circumference +is_a: PATO:0001712 ! increased perimeter +property_value: RO:0002604 PATO:0001899 + +[Term] +id: PATO:0001899 +name: decreased circumference +def: "A circumference which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001648 ! circumference +is_a: PATO:0001713 ! decreased perimeter +property_value: RO:0002604 PATO:0001898 + +[Term] +id: PATO:0001900 +name: front +def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction +property_value: RO:0002604 PATO:0001901 + +[Term] +id: PATO:0001901 +name: back +def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction +property_value: RO:0002604 PATO:0001900 + +[Term] +id: PATO:0001902 +name: unidirectional +def: "A directional quality inhering in a bearer by virtue of the bearer's having one direction only." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction + +[Term] +id: PATO:0001903 +name: bi-directional +def: "A directional quality inhering in a bearer by virtue of the bearer's having two directions." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction + +[Term] +id: PATO:0001904 +name: circling direction +def: "A directional quality inhering in a bearer by virtue of the bearer's direction approximating the shape of a circle." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction + +[Term] +id: PATO:0001905 +name: has normal numbers of parts of type +def: "The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part." [PATOC:CJM] +subset: relational_slim +synonym: "having physical part" EXACT [] +is_a: PATO:0001555 ! has number of +relationship: reciprocal_of PATO:0002050 ! normal amount + +[Term] +id: PATO:0001906 +name: movement quality +def: "A physical quality inhering in a bearer by virtue of the bearer's participation in movement." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001907 +name: botryoidal +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's being like the surface of a compact mass of grapes." [PATOC:cvs] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape + +[Term] +id: PATO:0001908 +name: multinucleate +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002505 ! nucleated + +[Term] +id: PATO:0001909 +name: trinucleate +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having three nuclei." [thefreedictionary:thefreedictionary] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001908 ! multinucleate + +[Term] +id: PATO:0001910 +name: folded +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's one part being layered over another connected part." [PATOC:cjm] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape + +[Term] +id: PATO:0001911 +name: circling +def: "A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting movement in a circular course." [PATOC:mb] +subset: value_slim +is_a: PATO:0002076 ! movement behavioral quality + +[Term] +id: PATO:0001912 +name: physiological state +def: "A quality of a single process inhering in a bearer by virtue of the state of bearer's mechanical, physical, and biochemical processes." [PATOC:mb] +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001913 +name: ictal +def: "A physiological state which is characterized by periods of high-frequency high amplitude electrical activity in neuronal tissue." [PATOC:mb] +is_a: PATO:0001912 ! physiological state + +[Term] +id: PATO:0001914 +name: non-ictal +def: "A physiological state which is characterized by normal electrical activity in neuronal tissue." [PATOC:mb] +is_a: PATO:0001912 ! physiological state + +[Term] +id: PATO:0001915 +name: anterodorsal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and upper surface of an organism relative to another entity." [PATOC:wd] +subset: relational_slim +subset: value_slim +is_a: PATO:0001632 ! anterior to + +[Term] +id: PATO:0001916 +name: posterodorsal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and upper surface of an organism relative to another entity." [PATOC:wd] +subset: relational_slim +subset: value_slim +is_a: PATO:0001633 ! posterior to + +[Term] +id: PATO:0001917 +name: anteroventral to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and abdomen of an organism relative to another entity." [PATOC:wd] +subset: relational_slim +subset: value_slim +is_a: PATO:0001632 ! anterior to + +[Term] +id: PATO:0001918 +name: posteroventral to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and abdomen of an organism relative to another entity." [PATOC:wd] +subset: relational_slim +subset: value_slim +is_a: PATO:0001633 ! posterior to + +[Term] +id: PATO:0001919 +name: mislocalised dorsally +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the back or upper surface of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001920 +name: mislocalised ventrally +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the abdomen of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001921 +name: mislocalised anteriorly +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the front of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001922 +name: mislocalised posteriorly +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the rear of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001923 +name: mislocalised laterally +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the side of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001924 +name: mislocalised medially +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the middle of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001925 +name: surface feature shape +def: "A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell." [PATOC:CJM] +comment: This quality either inheres directly in the surface, or in the entity that has the surface. For example, to say that a particular fly wing is curved is shorthand for saying the wing has a surface which is curved. +subset: attribute_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001926 +name: increased fluorescence +def: "A fluorescence which is higher than normal." [PATOC:GVG] +subset: value_slim +synonym: "high fluorescence" EXACT [] +is_a: PATO:0001290 ! fluorescent +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0001927 + +[Term] +id: PATO:0001927 +name: decreased fluorescence +def: "A fluorescence which is lower than normal." [PATOC:GVG] +subset: value_slim +synonym: "low fluorescence" EXACT [] +is_a: PATO:0001290 ! fluorescent +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0001926 + +[Term] +id: PATO:0001928 +name: blistered +def: "A texture quality inhering in a bearer by virtue of a local accumulation of fluid underneath the surface of the bearer." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "blistering" NARROW [] +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0001929 +name: variability of shape +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits shape variation or change." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001303 ! variability +relationship: towards PATO:0000052 ! shape + +[Term] +id: PATO:0001930 +name: variant shape +def: "A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001929 ! variability of shape +property_value: RO:0002604 PATO:0001931 + +[Term] +id: PATO:0001931 +name: invariant shape +def: "A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001929 ! variability of shape +property_value: RO:0002604 PATO:0001930 + +[Term] +id: PATO:0001932 +name: alternate placement +def: "A pattern quality inhering in a bearer by virtue of the bearer's being placed alternately one above the other." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000440 ! regular spatial pattern + +[Term] +id: PATO:0001933 +name: opposite +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned on opposite sides on the same plane." [ISBN:0881923214] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001934 +name: orbicular +def: "A shape quality inhering in a bearer by virtue of the bearer's being perfectly circular." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000411 ! circular + +[Term] +id: PATO:0001935 +name: obtuse +def: "A shape quality inhering in a bearer by virtue of the bearer's being roundish, a little inclining to be oblong." [ISBN:0881923214] +subset: value_slim +synonym: "roundish" EXACT [] +is_a: PATO:0000411 ! circular + +[Term] +id: PATO:0001936 +name: obovate +def: "A spheroid quality inhering in a bearer by virtue of the bearer's being egg-shaped and flat, with the narrow end attached to the base." [wordreference:wordreference] +subset: value_slim +synonym: "obovoid" RELATED [] +is_a: PATO:0001891 ! ovate + +[Term] +id: PATO:0001937 +name: spatulate +def: "A shape quality inhering in a bearer by virtue of the bearer's being oblong, with the lower end very much attenuated." [ISBN:0881923214] +subset: value_slim +synonym: "spathulate" EXACT [] +is_a: PATO:0000946 ! oblong + +[Term] +id: PATO:0001938 +name: rhomboid +def: "A spheroid quality inhering in a bearer by virtue of the bearer's being oval and a little angular in the middle." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0002317 ! parallelogram + +[Term] +id: PATO:0001940 +name: gigantic +def: "A size quality inhering in a bearer by virtue of the bearer's being many folds greater relative to the normal average." [PATOC:UMH] +subset: value_slim +synonym: "giant" EXACT [] +is_a: PATO:0000586 ! increased size + +[Term] +id: PATO:0001941 +name: yellow green +def: "A color consisting of yellow and green hues." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001942 +name: brown green +def: "A color consisting of brown and green hues." [PATOC:GVG] +synonym: "olive green" EXACT [] +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001943 +name: lilac +def: "A purple color which has low saturation and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000951 ! purple + +[Term] +id: PATO:0001944 +name: yellow orange +def: "A color consisting of yellow and orange hue." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000953 ! orange + +[Term] +id: PATO:0001945 +name: ochre +def: "A moderate yellow-orange to orange color." [wordreference:wordreference] +subset: value_slim +is_a: PATO:0001944 ! yellow orange + +[Term] +id: PATO:0001946 +name: banded +def: "A color pattern inhering in a bearer by virtue of bearer's exhibiting transverse stripes of one hue or degree of saturation crossing another." [ISBN:0881923214] +subset: value_slim +synonym: "striped" EXACT [] +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0001947 +name: netted +def: "A color pattern inhering in a bearer by virtue of bearer's being covered with reticulated lines of a different hue or degree of saturation." [ISBN:0881923214] +subset: value_slim +synonym: "net-like" EXACT [] +synonym: "reticulated" EXACT [] +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0001948 +name: furrowed +def: "A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by two or more parallel channels." [PATOC:JE] +subset: value_slim +synonym: "fluted" RELATED [] +is_a: PATO:0002255 ! grooved + +[Term] +id: PATO:0001949 +name: pointleted +def: "A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly in a little point." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0001419 ! sharp + +[Term] +id: PATO:0001950 +name: blunt +def: "A shape quality inhering in a bearer by virtue of the bearer's terminating gradually in a rounded end." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000944 ! sharpness + +[Term] +id: PATO:0001951 +name: whorled +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being in opposition round a common axis." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0001952 +name: distichous +def: "A spatial quality inhering in a bearer by virtue of the bearer's being arranged in two opposite rows (and hence in the same plane)." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001953 +name: decussate +def: "A pattern quality inhering in a bearer by virtue of the bearer's consisting of paired parts that alternately cross each other." [ISBN:0881923214] +subset: value_slim +synonym: "crosscutting" EXACT [] +synonym: "intercrossing" EXACT [] +synonym: "intersecting" EXACT [] +is_a: PATO:0000440 ! regular spatial pattern + +[Term] +id: PATO:0001954 +name: subulate +def: "A shape quality inhering in a bearer by virtue of the bearer's being linear, very narrow, tapering to a very fine point from a narrow base." [ISBN:0881923214] +subset: value_slim +synonym: "awl-shaped" EXACT [] +synonym: "needle-like" EXACT [] +is_a: PATO:0001199 ! linear + +[Term] +id: PATO:0001955 +name: cuneate +def: "A shape quality inhering in a bearer by virtue of the bearer's being narrowly triangular, wider at the apex and tapering toward the base." [wordreference:wordreference] +subset: value_slim +synonym: "wedge-shaped" EXACT [] +is_a: PATO:0001875 ! triangular + +[Term] +id: PATO:0001956 +name: variability of size +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits size variation or change." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001303 ! variability +relationship: towards PATO:0000117 ! size + +[Term] +id: PATO:0001957 +name: decreased variability of size +def: "A variability of size which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low variability of size" EXACT [] +is_a: PATO:0001956 ! variability of size +is_a: PATO:0002301 ! decreased quality +property_value: RO:0002604 PATO:0001958 + +[Term] +id: PATO:0001958 +name: increased variability of size +def: "A variability of size which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high variability of size" EXACT [] +is_a: PATO:0001956 ! variability of size +is_a: PATO:0002300 ! increased quality +property_value: RO:0002604 PATO:0001957 + +[Term] +id: PATO:0001959 +name: defasciculated +def: "A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated." [PATOC:mw] +subset: value_slim +is_a: PATO:0002013 ! fasciculation +property_value: RO:0002604 PATO:0001861 + +[Term] +id: PATO:0001960 +name: interdigitated +def: "A shape quality inhering in a bearer by virtue of the bearer's parts or projections being interlocked; for example, the fingers of two hands that are clasped." [PATOC:wdahdul] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001961 +name: in contact with +def: "A structural quality inhering in a bearer by virtue of the bearer's touching another entity." [PATOC:wdahdul] +subset: relational_slim +subset: value_slim +synonym: "contiguous" RELATED [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001962 +name: involute +def: "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled inwards spirally on each side." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000405 ! curled + +[Term] +id: PATO:0001963 +name: revolute +def: "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled backwards spirally on each side." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000405 ! curled + +[Term] +id: PATO:0001964 +name: circinate +def: "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled spirally downwards." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000405 ! curled + +[Term] +id: PATO:0001965 +name: reclinate +def: "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being bent down upon their stalk." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000405 ! curled + +[Term] +id: PATO:0001966 +name: convolute +def: "A curled quality inhering in a bearer by virtue of the bearer's one edge of its surface being wholly rolled up in another." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000405 ! curled + +[Term] +id: PATO:0001967 +name: actinodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having three or more primary branches diverging radially from a single point." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001968 +name: parallelodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having two or more parallel primary branches originate beside each other and converge apically." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001969 +name: craspedodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches terminating at the margin." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001970 +name: brochidodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches joined together in a series of prominent arches." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001971 +name: cladodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches freely branching toward the margin." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001972 +name: reticulodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches branching into a reticulum toward the margin." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001973 +name: cuspidate +def: "A shape quality inhering in a bearer by virtue of the bearer's being tapering gradually into a rigid point." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0001500 ! tapered + +[Term] +id: PATO:0001974 +name: retuse +def: "A shape quality inhering in a bearer by virtue of the bearer's terminating in a round end, the centre of which is depressed." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0001950 ! blunt + +[Term] +id: PATO:0001975 +name: unserrated +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0001976 ! serration +property_value: RO:0002604 PATO:0001206 + +[Term] +id: PATO:0001976 +name: serration +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having or lacking sharp straight-edged teeth pointing to the apex." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002267 ! edge shape + +[Term] +id: PATO:0001977 +name: angular +def: "A shape quality inhering in a bearer by virtue of the bearer's having at least one salient angle on the margin." [PATOC:GVG] +subset: value_slim +synonym: "angulate" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001978 +name: cut +def: "A shape quality inhering in a bearer by virtue of the bearer's being regularly divided by deep incisions." [ISBN:0881923214] +subset: value_slim +synonym: "incised" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001979 +name: lobed +def: "A shape quality inhering in a bearer by virtue of the bearer's being partly divided into a determinate number of regions." [ISBN:0881923214] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001980 +name: digitate +def: "A shape quality inhering in a bearer by virtue of the bearer's having distinct parts arising from a common point or center." [thefreedictionary:thefreedictionary] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001981 +name: auriculate +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an ear." [url:http\://www.thefreedictionary.com/auriculate] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001982 +name: attenuate +def: "A shape quality inhering in a bearer by virtue of the bearer's gradually tapering to a slender point." [url:http\://www.thefreedictionary.com/attenuate] +subset: value_slim +is_a: PATO:0001500 ! tapered + +[Term] +id: PATO:0001983 +name: perfoliate +def: "A structural quality inhering in a bearer by virtue of the bearer's two basal lobes being united together." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001984 +name: decurrent +def: "A shape quality inhering in a bearer by virtue of the bearer's being prolonged below the point of insertion." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001985 +name: frozen +def: "A quality inhering in a bearer by virtue of the bearer's being kept below its freezing point." [OBI:OBI] +subset: value_slim +is_a: PATO:0000146 ! temperature + +[Term] +id: PATO:0001986 +name: dissolved +def: "A quality inhering in a bearer by virtue of the bearer's passing into solution." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001536 ! solubility + +[Term] +id: PATO:0001987 +name: saccular +def: "A structural quality inhering in a bearer by virtue of the bearer's having a three dimensional cavity with a narrow or no opening, and often containing an anatomical substance." [PATOC:MAH] +subset: value_slim +synonym: "sacular" EXACT [] +is_a: PATO:0002014 ! structure, cavities + +[Term] +id: PATO:0001988 +name: quadrangular +def: "A shape quality inhering in a bearer by virtue of the bearer's having four angles and four sides." [url:http\://www.oed.com/] +subset: value_slim +is_a: PATO:0002006 ! 2-D shape + +[Term] +id: PATO:0001989 +name: sinuous +def: "A curvature quality inhering in a bearer by virtue of the bearer's having many curves and turns." [PATOC:GVG] +subset: value_slim +synonym: "twisted" RELATED [] +is_a: PATO:0001591 ! curvature + +[Term] +id: PATO:0001990 +name: duration of disease +def: "A duration quality of a process inhering in a disease by virtue of the bearer's duration of an impairment of health or of a condition of abnormal functioning." [PATOC:GVG] +comment: MAH: I think this term should be obsoleted. Is it used? +is_a: PATO:0001309 ! duration + +[Term] +id: PATO:0001991 +name: immortal +def: "A quality inhering in a bearer by virtue of the bearer's disposition to being capable of indefinite growth or division." [answers.com:answers.com] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001992 +name: cellularity +def: "An organismal quality inhering in a bearer by virtue of the bearer's consisting cells." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0001993 +name: multicellular +def: "A cellularity quality inhering in a bearer by virtue of the bearer's consisting of more than one cell." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001992 ! cellularity +disjoint_from: PATO:0001994 ! unicellular + +[Term] +id: PATO:0001994 +name: unicellular +def: "A cellularity quality inhering in a bearer by virtue of the bearer's consisting of exactly one cell." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001992 ! cellularity + +[Term] +id: PATO:0001995 +name: organismal quality +def: "A quality that inheres in an entire organism or part of an organism." [PATOC:CJM] +is_a: PATO:0001241 ! physical object quality +disjoint_from: PATO:0002003 ! population quality + +[Term] +id: PATO:0001997 +name: decreased amount +alt_id: PATO:0000419 +alt_id: PATO:0000468 +def: "An amount which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "decreased" RELATED [] +synonym: "decreased number" EXACT [] +synonym: "present in fewer numbers in organism" EXACT [] +synonym: "reduced" RELATED [] +synonym: "subnumerary" RELATED [] +is_a: PATO:0000467 ! present +is_a: PATO:0002301 ! decreased quality +property_value: RO:0002604 PATO:0000470 + +[Term] +id: PATO:0001998 +name: conspicuousness +def: "A quality inhering in a bearer by virtue of its visibility." [PATOC:MAH] +comment: This term was created as a grouping term for the 2 terms "conspicuous" and "inconspicuous". However, it is not clear if these terms should even remain in PATO. +is_a: PATO:0000068 ! qualitative + +[Term] +id: PATO:0001999 +name: lacks parts or has fewer parts of type +def: "The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type." [PATOC:CJM] +subset: relational_slim +synonym: "loss of" EXACT [] +is_a: PATO:0002083 ! altered number of + +[Term] +id: PATO:0002000 +name: lacks all parts of type +alt_id: PATO:0001557 +def: "A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity." [PATOC:CJM] +comment: Example: [E=organism Q=lacks_all_parts_of_type E2=Wing] - applies to an organism. A relational quality in which the bearer entity has no parts of the specified type. The bearer of this quality has_part = 0 of the indicated entity type, where a comparable organism usually has at least 1 part of the same type. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e lacks all parts of type X at time t, then there exists no instances x of X at t such that x part_of e that has no wings, where wings are normally present in that organism type. In OWL this is equivalent to a restriction on the OBO_REL:has_part relation with cardinality=0, i.e has_part 0 E2. +subset: relational_slim +synonym: "lacks all physical parts of type" EXACT [] +xref: OBO_REL:lacks_part +is_a: PATO:0001999 ! lacks parts or has fewer parts of type +relationship: reciprocal_of PATO:0000462 ! absent + +[Term] +id: PATO:0002001 +name: has fewer parts of type +alt_id: PATO:0001569 +def: "The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly." [PATOC:CJM] +comment: Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type. +subset: relational_slim +synonym: "decreased number of" EXACT [] +synonym: "has decreased number of" EXACT [] +synonym: "has fewer physical parts of type" EXACT [] +is_a: PATO:0001999 ! lacks parts or has fewer parts of type +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0002002 + +[Term] +id: PATO:0002002 +name: has extra parts of type +alt_id: PATO:0001560 +def: "The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part." [PATOC:CJM] +comment: In polydactyly, the bearer of the quality is the hand, and the entity type being counted is 'finger'. In EQ syntax, E=hand, Q= E2=finger. +subset: relational_slim +synonym: "has extra parts of" EXACT [] +synonym: "has increased number of" EXACT [] +synonym: "having extra physical parts" EXACT [] +synonym: "having supernumerary physical parts" EXACT [] +synonym: "increased number of" EXACT [] +is_a: PATO:0002083 ! altered number of +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0002001 + +[Term] +id: PATO:0002003 +name: population quality +def: "A quality that inheres in an entire population or part of a population." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0002004 +name: obsolete surface shape +def: "A shape that inheres in a part of a surface. An object can have different surface shapes on different parts of its surface." [PATOC:CJM] +comment: Consider PATO:0001925 +subset: attribute_slim +is_obsolete: true + +[Term] +id: PATO:0002005 +name: concavity +def: "Surface shape that refers to the inward or outward curvature of the surface." [PATOC:MAH] +subset: attribute_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0002006 +name: 2-D shape +def: "A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity." [PATOC:CJM] +subset: attribute_slim +synonym: "2-D projection" RELATED [] +synonym: "cross-sectional" RELATED [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0002007 +name: convex 3-D shape +def: "A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave." [PATOC:CJM] +comment: Use this term or an is_a child of this term when the entire shape of the object is known. +subset: attribute_slim +xref: Image:http\://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png +is_a: PATO:0002266 ! 3-D shape +relationship: has_cross_section PATO:0002006 ! 2-D shape +property_value: RO:0002604 PATO:0002008 + +[Term] +id: PATO:0002008 +name: concave 3-D shape +def: "A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave." [PATOC:CJM] +subset: attribute_slim +xref: Image:http\://en.wikipedia.org/wiki/Image\:Convex_polygon_illustration2.png +is_a: PATO:0002266 ! 3-D shape +relationship: has_part PATO:0001857 ! concave +property_value: RO:0002604 PATO:0002007 + +[Term] +id: PATO:0002009 +name: branchiness +def: "A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:MAH] +subset: attribute_slim +subset: cell_quality +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0002010 +name: looseness +def: "A texture quality inhering in a bearer by virtue of the bearer's bing full of small openings or gaps." [url:http\://www.wordreference.com/definition/loose] +subset: value_slim +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0002011 +name: neoplastic +def: "A structural quality which is held by a bearer when the latter's disposition the presence of abnormally proliferating masses of cells." [PATOC:MAH] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +synonym: "tumorous" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0002012 +name: coating +def: "A texture quality that exists through a liquid cover on the surface of the bearer." [Wikipedia:Wikipedia] +subset: value_slim +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0002013 +name: fasciculation +def: "A structural quality inhering in a bearer by virtue of whether the bearer forms a bundle of anatomical fibers, as of muscle or nerve." [answers.com:http\://www.answers.com/] +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0002014 +name: structure, cavities +def: "A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0002016 +name: magnitude +is_a: PATO:0000068 ! qualitative + +[Term] +id: PATO:0002017 +name: increased magnitude +synonym: "high magnitude" EXACT [] +is_a: PATO:0002016 ! magnitude +property_value: RO:0002604 PATO:0002018 + +[Term] +id: PATO:0002018 +name: decreased magnitude +synonym: "low magnitude" EXACT [] +is_a: PATO:0002016 ! magnitude +property_value: RO:0002604 PATO:0002017 + +[Term] +id: PATO:0002019 +name: aplastic growth +def: "A growth quality of occurrent in which the growth of an organism, structure or group of organisms does not occur." [PATOC:MAH] +synonym: "agenesis" NARROW [] +is_a: PATO:0001433 ! growth quality of occurrent + +[Term] +id: PATO:0002020 +name: pale pink +def: "Pink color having high brightness and low saturation." [PATOC:GVG] +is_a: PATO:0000954 ! pink + +[Term] +id: PATO:0002021 +name: conical +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a cone (a 3-D shape with a round cross section that tapers)." [Wikipedia:http\://en.wikipedia.org/wiki/Cone_(geometry)] +subset: value_slim +synonym: "cone-shaped" EXACT [] +xref: Image:http\://upload.wikimedia.org/wikipedia/commons/d/d2/Cone_3d.png +is_a: PATO:0002007 ! convex 3-D shape + +[Term] +id: PATO:0002022 +name: villiform +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a minute projection (villus)." [PATOC:PEM] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0002023 +name: apical-basal polarity +def: "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an apical-basal axis." [PATOC:MAH] +subset: value_slim +is_a: PATO:0001769 ! positional polarity + +[Term] +id: PATO:0002024 +name: anterior-posterior polarity +def: "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the anterior-posterior axis." [PATOC:MAH] +subset: value_slim +synonym: "rostral-caudal polarity" EXACT [] +synonym: "superior-caudal polarity (human torso)" EXACT [] +is_a: PATO:0001769 ! positional polarity + +[Term] +id: PATO:0002025 +name: external angle +def: "A convex angle that is formed by one side of a polygon and a line extended from an adjacent side." [http://en.wikipedia.org/wiki/Internal_angle] +subset: relational_slim +subset: value_slim +is_a: PATO:0001053 ! convex angle to + +[Term] +id: PATO:0002026 +name: non-progressive +def: "A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time." [PATOC:GVG] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000057 ! occurrence +property_value: RO:0002604 PATO:0001818 +created_by: george gkoutos +creation_date: 2008-12-18T12:49:19Z + +[Term] +id: PATO:0002027 +name: osmolality +def: "A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per kilogram of solvent." [Wikipedia:http\://en.wikipedia.org/wiki/Osmolarity] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0000033 ! concentration of +created_by: george +creation_date: 2009-01-27T10:53:11Z + +[Term] +id: PATO:0002028 +name: decreased osmolality +def: "An osmolality which is relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "low osmolality" EXACT [] +is_a: PATO:0002027 ! osmolality +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0002029 +created_by: george +creation_date: 2009-01-27T10:55:33Z + +[Term] +id: PATO:0002029 +name: increased osmolality +def: "An osmolality which is relatively high." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "high osmolality" EXACT [] +is_a: PATO:0002027 ! osmolality +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0002028 +created_by: george +creation_date: 2009-01-27T10:56:19Z + +[Term] +id: PATO:0002030 +name: specificity to +def: "A molecular quality that inheres in a molecular entity by virtue of whether the bearer exhibits the ability of a probe to react precisely with a specific target molecule." [PATOC:mc] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0002182 ! molecular quality +created_by: george +creation_date: 2009-01-27T11:13:52Z + +[Term] +id: PATO:0002031 +name: upturned +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved or tilted such that the tip points upwards." [PATOC:cjm] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: george +creation_date: 2009-01-27T11:23:45Z + +[Term] +id: PATO:0002032 +name: forward scatter +def: "A reflectivity quality inhering in light by virtue of the bearer's scattering occurring at small angle to the incident beam." [PATOC:mc] +subset: attribute_slim +is_a: PATO:0001294 ! radiation reflective quality +created_by: george +creation_date: 2009-01-27T11:38:49Z + +[Term] +id: PATO:0002033 +name: side scatter +def: "A reflective quality that is the light scattering occurring at wide angle (around 90 degrees) to the incident beam." [PATOC:mc] +subset: attribute_slim +is_a: PATO:0001294 ! radiation reflective quality +created_by: george +creation_date: 2009-01-27T11:39:36Z + +[Term] +id: PATO:0002034 +name: undivided +def: "A shape quality inhering in a bearer by virtue of the bearer's being unseparated into parts or divisions." [PATOC:GVG] +subset: value_slim +synonym: "unseparated" RELATED [] +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2009-01-27T11:53:46Z + +[Term] +id: PATO:0002035 +name: ipsilateral to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being on the same side in relation to another structure." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "ipsilateral" EXACT [] +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2009-02-01T02:04:11Z + +[Term] +id: PATO:0002036 +name: axial to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located towards the central axis of the organism or an extremity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2009-02-01T02:06:20Z + +[Term] +id: PATO:0002037 +name: degeneration +def: "A structural quality inhering in a bearer by virtue of the bearer exhibiting deterioration of its structure." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-02-03T11:13:19Z + +[Term] +id: PATO:0002038 +name: non-degenerate +def: "A structural quality inhering in a bearer whose structure which does not deteriorate." [PATOC:GVG] +subset: value_slim +synonym: "not degenerate" EXACT [] +is_a: PATO:0002037 ! degeneration +property_value: RO:0002604 PATO:0000639 +created_by: george +creation_date: 2009-02-03T11:14:54Z + +[Term] +id: PATO:0002039 +name: biconcave +def: "A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001857 ! concave +property_value: RO:0002604 PATO:0002040 + +[Term] +id: PATO:0002040 +name: biconvex +def: "A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface." [thefreedictionary:http\://www.thefreedictionary.com/biconvexity] +subset: value_slim +xref: Image:http\://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx +is_a: PATO:0001355 ! convex +property_value: RO:0002604 PATO:0002039 + +[Term] +id: PATO:0002041 +name: anterior-posterior diameter +def: "A diameter that is along the anterior-posterior axis." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001334 ! diameter + +[Term] +id: PATO:0002042 +name: decreased anterior-posterior diameter +def: "An anterior-posterior diameter quality which is relatively small." [PATOC:GVG] +subset: value_slim +synonym: "low anterior-posterior diameter" EXACT [] +is_a: PATO:0001715 ! decreased diameter +is_a: PATO:0002041 ! anterior-posterior diameter +property_value: RO:0002604 PATO:0002043 + +[Term] +id: PATO:0002043 +name: increased anterior-posterior diameter +def: "An anterior-posterior diameter quality which is relatively large." [PATOC:GVG] +subset: value_slim +synonym: "high anterior-posterior diameter" EXACT [] +is_a: PATO:0001714 ! increased diameter +is_a: PATO:0002041 ! anterior-posterior diameter +property_value: RO:0002604 PATO:0002042 + +[Term] +id: PATO:0002044 +name: trapezoid +def: "A shape quality inhering in a bearer by virtue of the bearer's being a quadrilateral with two parallel sides." [PATOC:GVG] +subset: value_slim +synonym: "trapezoidal" EXACT [] +is_a: PATO:0001988 ! quadrangular + +[Term] +id: PATO:0002045 +name: dendritic +def: "A branched quality inhering in a bearer by virtue of the bearer's having smaller branches arising from larger branches. Resembling a tree in branching structure." [PATOC:cvs] +subset: value_slim +synonym: "dendriform" EXACT [] +synonym: "dendroid" EXACT [] +synonym: "dendroidal" EXACT [] +is_a: PATO:0000402 ! branched +created_by: george +creation_date: 2009-02-15T08:11:41Z + +[Term] +id: PATO:0002046 +name: abaxial to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being away from or on the opposite side of the central axis." [medical-dictionary:http\://medical-dictionary.thefreedictionary.com/abaxial] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george gkoutos +creation_date: 2009-03-03T04:16:11Z + +[Term] +id: PATO:0002047 +name: adaxial to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located on the side nearest to the axis of an organ or organism." [thefreedictionary:http\://www.thefreedictionary.com/adaxial] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george gkoutos +creation_date: 2009-03-03T04:22:28Z + +[Term] +id: PATO:0002048 +name: mosaicism +def: "An organismal quality inhering in a bearer by virtue of the bearer's having two or more cell populations that differ in genetic makeup. This situation can affect any type of cell, including blood cells, gametes (egg and sperm cells), and skin." [Medline:http\://www.nlm.nih.gov/medlineplus] +subset: attribute_slim +synonym: "heterogeneity" RELATED [] +is_a: PATO:0001995 ! organismal quality +created_by: george gkoutos +creation_date: 2009-03-03T04:30:52Z + +[Term] +id: PATO:0002049 +name: lateral and rotional curvature +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis and towards the side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001787 ! rotational curvature +created_by: George Gkoutos +creation_date: 2009-03-13T12:36:14Z + +[Term] +id: PATO:0002050 +name: normal amount +def: "An amount which normal." [PATOC:GVG] +synonym: "present in normal numbers in organism" EXACT [] +is_a: PATO:0000467 ! present +relationship: reciprocal_of PATO:0001905 ! has normal numbers of parts of type +created_by: george +creation_date: 2009-03-20T11:16:22Z + +[Term] +id: PATO:0002051 +name: increased occurrence +def: "An occurrence which is relatively high." [PATOC:GVG] +synonym: "increased incidence" EXACT [] +is_a: PATO:0000057 ! occurrence +is_a: PATO:0002304 ! increased process quality +property_value: RO:0002604 PATO:0002052 +created_by: George Gkoutos +creation_date: 2009-03-26T11:10:11Z + +[Term] +id: PATO:0002052 +name: decreased occurrence +def: "An occurrence which is relatively low." [PATOC:GVG] +synonym: "decreased incidence" EXACT [] +is_a: PATO:0000057 ! occurrence +is_a: PATO:0002302 ! decreased process quality +property_value: RO:0002604 PATO:0002051 +created_by: George Gkoutos +creation_date: 2009-03-26T11:12:35Z + +[Term] +id: PATO:0002053 +name: dorso-ventrally flattened +def: "A quality inhering in a bearer by virtue of the bearer's being flattened along dorso-ventral axis." [PATOC:MSP] +subset: value_slim +is_a: PATO:0002254 ! flattened +created_by: George Gkoutos +creation_date: 2009-03-26T03:02:38Z + +[Term] +id: PATO:0002054 +name: laterally compressed +def: "A quality inhering in a bearer by virtue of the bearer's being flattened along transverse axis." [PATOC:msp] +subset: value_slim +synonym: "laterally flattened" EXACT [] +synonym: "transversely flattened" RELATED [] +is_a: PATO:0002254 ! flattened +created_by: George Gkoutos +creation_date: 2009-03-26T03:03:37Z + +[Term] +id: PATO:0002055 +name: increased fragility +def: "A fragility which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001362 ! fragile +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0002056 +created_by: George Gkoutos +creation_date: 2009-03-26T04:01:37Z + +[Term] +id: PATO:0002056 +name: decreased fragility +def: "A fragility which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001362 ! fragile +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0002055 +created_by: George Gkoutos +creation_date: 2009-03-26T04:02:14Z + +[Term] +id: PATO:0002057 +name: increased area +def: "An area which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000586 ! increased size +is_a: PATO:0001323 ! area +property_value: RO:0002604 PATO:0002058 +created_by: George Gkoutos +creation_date: 2009-03-30T04:11:43Z + +[Term] +id: PATO:0002058 +name: decreased area +def: "An area which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000587 ! decreased size +is_a: PATO:0001323 ! area +property_value: RO:0002604 PATO:0002057 +created_by: George Gkoutos +creation_date: 2009-03-30T04:12:11Z + +[Term] +id: PATO:0002059 +name: emmision wavelength +def: "The specific wavelength of light emitted by a fluorescent molecule, such as a labelled probe, upon absorption of light at the (higher) excitation wavelength." [web:http\://www.expertglossary.com/] +subset: attribute_slim +is_a: PATO:0001299 ! radiation emitting quality +created_by: George Gkoutos +creation_date: 2009-05-27T02:25:33Z + +[Term] +id: PATO:0002060 +name: absorption wavelength +def: "The specific wavelength of radiation that can be retained by a bearer." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001293 ! absorption quality +created_by: George Gkoutos +creation_date: 2009-05-27T02:33:32Z + +[Term] +id: PATO:0002062 +name: physical quality of a process +subset: attribute_slim +is_a: PATO:0001236 ! process quality +created_by: george +creation_date: 2009-06-05T09:16:46Z + +[Term] +id: PATO:0002063 +name: columnar +def: "A shape inhering in a bearer by virtue of the bearer's being elongated and cylindrical." [PATOC:me] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2009-07-01T01:44:06Z + +[Term] +id: PATO:0002064 +name: fenestrated +def: "A structure quality inhering in a bearer by virtue of the bearer's delimited by a surface with holes." [PATOC:me] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: George Gkoutos +creation_date: 2009-07-01T01:46:53Z + +[Term] +id: PATO:0002065 +name: star shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's being arranged like rays or radii; radiating from a common center." [PATOC:me] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "stellate" EXACT [] +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2009-07-01T01:48:19Z + +[Term] +id: PATO:0002066 +name: crystal configuration +def: "A solid configuration inhering in a material entity by virtue of its constituent atoms, molecules, or ions being arranged in an orderly repeating pattern extending in all three spatial dimensions." [Wikipedia:http\://en.wikipedia.org/wiki/Crystal] +subset: value_slim +is_a: PATO:0001736 ! solid configuration +created_by: George Gkoutos +creation_date: 2009-07-01T01:50:40Z + +[Term] +id: PATO:0002067 +name: stratification +def: "A spatial pattern inhering in a bearer by virtue of the bearer's layered configuration." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000060 ! spatial pattern +created_by: George Gkoutos +creation_date: 2009-07-01T02:30:45Z + +[Term] +id: PATO:0002068 +name: stratified +def: "A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002067 ! stratification +property_value: RO:0002604 PATO:0002069 +created_by: George Gkoutos +creation_date: 2009-07-01T02:31:53Z + +[Term] +id: PATO:0002069 +name: unstratified +def: "A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002067 ! stratification +property_value: RO:0002604 PATO:0002068 +created_by: George Gkoutos +creation_date: 2009-07-01T02:33:41Z + +[Term] +id: PATO:0002070 +name: affinity +def: "A molecular quality that arises from the molecular attraction exerted between two atoms or compounds." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2009-09-18T01:16:16Z + +[Term] +id: PATO:0002071 +name: increased affinity +def: "An affinity which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0002072 +created_by: George Gkoutos +creation_date: 2009-09-18T01:29:42Z + +[Term] +id: PATO:0002072 +name: decreased affinity +def: "An affinity which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0002071 +created_by: George Gkoutos +creation_date: 2009-09-18T01:30:11Z + +[Term] +id: PATO:0002073 +name: avidity +def: "A molecular quality that arises from the synergistic strength of bond affinities between multiple bond interactions." [Wikipedia:Wikipedia] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2009-09-18T01:41:44Z + +[Term] +id: PATO:0002074 +name: increased avidity +def: "An avidity which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002073 ! avidity +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0002075 +created_by: George Gkoutos +creation_date: 2009-09-18T01:45:56Z + +[Term] +id: PATO:0002075 +name: decreased avidity +def: "An avidity which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002073 ! avidity +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0002074 +created_by: George Gkoutos +creation_date: 2009-09-18T01:45:59Z + +[Term] +id: PATO:0002076 +name: movement behavioral quality +def: "A behavioral quality inhering in a bearer by virtue of the bearer's movement." [PATOC:GVG] +subset: attribute_slim +synonym: "movement behavioural quality" EXACT [] +is_a: PATO:0000186 ! behavioral quality +created_by: George Gkoutos +creation_date: 2009-09-18T02:04:48Z + +[Term] +id: PATO:0002077 +name: stacked +def: "A spatial quality inhering in a bearer by virtue of the bearer's being positioned with multiple entities of the same type above and below." [PATOC:CJM] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: George Gkoutos +creation_date: 2009-09-18T02:11:35Z + +[Term] +id: PATO:0002078 +name: hollow +def: "A quality inhering in a bearer by virtue of the bearer's having an empty space or cavity within." [url:http\://www.merriam-webster.com/dictionary/hollow] +subset: value_slim +is_a: PATO:0002014 ! structure, cavities +created_by: George Gkoutos +creation_date: 2009-09-18T02:19:20Z + +[Term] +id: PATO:0002080 +name: broken into two pieces +def: "A broken quality inhering in a bearer by virtue of the bearer's being seperated into two contiguous wholes." [PATOC:CJM] +subset: value_slim +is_a: PATO:0001444 ! broken +created_by: George Gkoutos +creation_date: 2009-09-21T10:18:11Z + +[Term] +id: PATO:0002081 +name: shattered +def: "A broken quality inhering in a bearer by virtue of the bearer's being broken into multiple contiguous wholes." [PATOC:GJM] +subset: value_slim +is_a: PATO:0001444 ! broken +created_by: George Gkoutos +creation_date: 2009-09-21T10:18:51Z + +[Term] +id: PATO:0002082 +name: partially broken +def: "A broken quality inhering in a bearer by virtue of the bearer's being still one contiguous whole but structurally damaged such that in danger of become two or more." [PATOC:CJM] +subset: value_slim +is_a: PATO:0001444 ! broken +created_by: George Gkoutos +creation_date: 2009-09-21T10:20:06Z + +[Term] +id: PATO:0002083 +name: altered number of +def: "Having extra or fewer parts." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0001555 ! has number of +created_by: George Gkoutos +creation_date: 2009-09-21T10:41:58Z + +[Term] +id: PATO:0002084 +name: obsolete post-mortem +def: "The period after death of the organism." [thefreedictionary:thefreedictionary] +comment: Terms were requested by the OBI consortium but it was later decided that the term was not reflecting a quality rather what it might be refered to as a "conferred quality". +subset: value_slim +is_obsolete: true +created_by: George Gkoutos +creation_date: 2009-09-25T11:29:21Z + +[Term] +id: PATO:0002085 +name: obsolete pre-mortem +def: "The period before death of the organism." [merriam-webster:merriam-webster] +comment: Terms were requested by the OBI consortium but it was later decided that the term was not reflecting a quality rather what it might be refered to as a "conferred quality". +subset: value_slim +is_obsolete: true +created_by: George Gkoutos +creation_date: 2009-09-25T11:31:13Z + +[Term] +id: PATO:0002087 +name: bullet-shaped +def: "A quality inhering in a bearer by virtue of the bearer's being short and wide and tapered distally." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape +created_by: George Gkoutos +creation_date: 2009-09-30T09:53:43Z + +[Term] +id: PATO:0002088 +name: monocystic +def: "A structure quality inhering in a bearer by virtue of the bearer's body consisting of one sac." [mondofacto:mondofacto] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001673 ! cystic +created_by: George Gkoutos +creation_date: 2009-10-01T03:00:20Z + +[Term] +id: PATO:0002089 +name: polycystic +def: "A structure quality inhering in a bearer by virtue of the bearer's body containing more than one cyst - formations of an epithelium bounded cavity not associated with neoplasia." [PATOC:GVG] +subset: value_slim +synonym: "multicystic" EXACT [] +is_a: PATO:0001673 ! cystic +created_by: George Gkoutos +creation_date: 2009-10-01T03:02:54Z + +[Term] +id: PATO:0002090 +name: adenomatous +def: "A morphology quality inhering in a tumour by virtue of the bearer's exhbiting the morphological characteristics of a glandular epithelial cell." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000051 ! morphology +created_by: george +creation_date: 2009-10-05T11:25:52Z + +[Term] +id: PATO:0002091 +name: subacute +def: "A quality of a single process inhering in a bearer by virtue of the bearer's having an onset and time course between acute and chronic." [PATOC:GVG] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001309 ! duration +created_by: george +creation_date: 2009-10-05T11:31:35Z + +[Term] +id: PATO:0002092 +name: anaplastic +def: "A morphology quality inhering in a neoplastic cell by virtue of the bearer's exhibiting breakdown of cell-cell interaction maintaining tissue architecture, proliferative dysregulation and bizarre modification to nucleus size and shape." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000051 ! morphology +created_by: george +creation_date: 2009-10-05T11:45:53Z + +[Term] +id: PATO:0002093 +name: ballooning +def: "A volume quality inhering in a degenerating cell by virtue of the bearer's exhibiting an increase in volume associated with cytoplasmic abnormalities." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000595 ! increased volume +created_by: george +creation_date: 2009-10-05T12:01:13Z + +[Term] +id: PATO:0002094 +name: basophilic +def: "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for basic dyes under specific ph conditions." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +created_by: george +creation_date: 2009-10-05T12:05:23Z + +[Term] +id: PATO:0002095 +name: obsolete neoplasm disposition +def: "A disposition inhering in a tumour to progress or fail to progress during it's life time." [PATOC:GVG] +subset: attribute_slim +is_obsolete: true +created_by: george +creation_date: 2009-10-05T12:15:02Z + +[Term] +id: PATO:0002096 +name: neoplastic, non-malignant +def: "A disposition inhering in a tumour by virtue of the bearer's disposition not to progress, invade surrounding tissues or metastasize." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +synonym: "benign" RELATED [] +is_a: PATO:0002011 ! neoplastic +disjoint_from: PATO:0002097 ! neoplastic, malignant +disjoint_from: PATO:0002098 ! neoplastic, metastatic +disjoint_from: PATO:0002129 ! neoplastic, invasive +created_by: george +creation_date: 2009-10-05T12:47:14Z + +[Term] +id: PATO:0002097 +name: neoplastic, malignant +def: "A disposition inhering in a tumour by virtue of the bearer's disposition to progress, invade surrounding tissues or metastasize." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0002011 ! neoplastic +disjoint_from: PATO:0002132 ! neoplastic, non-invasive +created_by: george +creation_date: 2009-10-05T12:50:22Z + +[Term] +id: PATO:0002098 +name: neoplastic, metastatic +def: "A disposition inhering in a tumour by virtue of the bearer's disposition to spread and invade distant tissues." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0002011 ! neoplastic +disjoint_from: PATO:0002132 ! neoplastic, non-invasive +created_by: george +creation_date: 2009-10-05T12:54:48Z + +[Term] +id: PATO:0002099 +name: differentiated +def: "A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency +property_value: RO:0002604 PATO:0002100 +created_by: george +creation_date: 2009-10-05T12:58:54Z + +[Term] +id: PATO:0002100 +name: undifferentiated +def: "A cellular quality inhering in a bearer by virtue of having not yet acquired a special structure of function." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency +property_value: RO:0002604 PATO:0002099 +created_by: george +creation_date: 2009-10-05T12:59:21Z + +[Term] +id: PATO:0002101 +name: metaplastic +def: "A cellular quality inhering in a bearer by virtue of having changed from one fully differentiated state into another." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "trans-differentiated" RELATED [] +is_a: PATO:0001397 ! cellular potency +created_by: george +creation_date: 2009-10-05T01:09:09Z + +[Term] +id: PATO:0002102 +name: proliferative +def: "A cellular quality inhering in a cell that arises by virtue of whether the bearer exhibits the ability to grow and proliferate in number through cell division." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001396 ! cellular quality +created_by: george +creation_date: 2009-10-05T01:16:31Z + +[Term] +id: PATO:0002103 +name: infiltrative +def: "A structural quality inhering in a bearer by virtue of the bearer's penetrating or permeating another substance or area." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "infiltrating" EXACT [] +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-10-05T01:27:56Z + +[Term] +id: PATO:0002104 +name: inflamed +def: "A compositional quality inhering in an bearer by virtue of the bearer's infiltration by leukocytes, local edema and accumulation of plasma proteins." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-05T01:37:35Z + +[Term] +id: PATO:0002105 +name: hemorrhagic +def: "A structural quality inhering in a bearer by virtue of the bearer's exhibiting excessive discharge of blood from the blood vessels." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-10-05T01:55:53Z + +[Term] +id: PATO:0002106 +name: poorly differentiated +def: "A cellular quality inhering in a bearer by virtue of its lacking most of the cellular characteristics which would allow it to be fully differentiated." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002099 ! differentiated +created_by: george +creation_date: 2009-10-05T02:53:43Z + +[Term] +id: PATO:0002107 +name: peripheral +def: "A positional quality inhering in a bearer by virtue of the bearer's being at the edge or boundary of a related entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2009-10-05T02:58:16Z + +[Term] +id: PATO:0002108 +name: papillary +def: "A quality inhering in a bearer by virtue of the bearer's resembling small nipple like projection." [PATO:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000623 ! exserted +created_by: george +creation_date: 2009-10-05T03:04:52Z + +[Term] +id: PATO:0002109 +name: caseous +def: "A structural quality inhering in a bearer by virtue of the bearer's resembling cheese." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "cheese-like" EXACT [] +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-10-05T03:09:27Z + +[Term] +id: PATO:0002110 +name: well differentiated +def: "A cellular quality inhering in a bearer by virtue of its having most of the cellular characteristics of the tissue of origin." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002099 ! differentiated +created_by: george +creation_date: 2009-10-05T03:26:29Z + +[Term] +id: PATO:0002111 +name: moderately well differentiated +def: "A cellular quality inhering in a bearer by virtue of its lacking few of the cellular characteristics which would allow it to be fully differentiated." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +is_a: PATO:0002099 ! differentiated +created_by: george +creation_date: 2009-10-05T03:29:42Z + +[Term] +id: PATO:0002112 +name: perforate +alt_id: PATO:0000649 +def: "A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "permeable" RELATED [] +synonym: "pierced" RELATED [] +is_a: PATO:0002014 ! structure, cavities +property_value: RO:0002604 PATO:0001821 +created_by: george +creation_date: 2009-10-05T03:37:05Z + +[Term] +id: PATO:0002113 +name: cribriform +def: "Perforated like a sieve." [merriam-webster:merriam-webster] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002112 ! perforate +created_by: george +creation_date: 2009-10-05T03:38:22Z + +[Term] +id: PATO:0002114 +name: fatty +def: "A composition quality inhering in a bearer by virtue of the bearer's containing excess lipid." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-05T03:47:15Z + +[Term] +id: PATO:0002115 +name: fibrinoid +def: "A composition quality inhering in a bearer by virtue of the bearer's containing fibrin." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-05T04:01:01Z + +[Term] +id: PATO:0002116 +name: fibrinopurulent +def: "A composition quality inhering in exudate by virtue of the bearer's containing fibrin." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-05T04:03:03Z + +[Term] +id: PATO:0002117 +name: glandular +def: "A morphology quality inhering in a bearer by virtue of the bearer's exhbiting the morphological characteristics of a gland." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000051 ! morphology +created_by: george +creation_date: 2009-10-05T04:11:30Z + +[Term] +id: PATO:0002118 +name: multiple +def: "A quality inhering in a bearer by virtue of the bearer's being present in more than two copies." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000470 ! increased amount +created_by: george +creation_date: 2009-10-06T03:28:38Z + +[Term] +id: PATO:0002119 +name: hydropic +def: "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of intracellular fluid." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-06T03:45:58Z + +[Term] +id: PATO:0002120 +name: suppurative +def: "A quality inhering a bearer by virtue of the bearer's ability to generate pus." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "purulent" RELATED [] +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-06T03:56:00Z + +[Term] +id: PATO:0002121 +name: trabecular +def: "A spatial pattern inhering in a bearer by virtue of the bearer's structureresembling an irregular meshwork with cross-linking struts." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000330 ! irregular spatial pattern +created_by: george +creation_date: 2009-10-06T03:57:55Z + +[Term] +id: PATO:0002122 +name: mixed +def: "A composition quality inhering in a bearer by virtue of the bearer's being composed of more than one identifiable entities." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-06T04:29:17Z + +[Term] +id: PATO:0002123 +name: minimal +def: "Being smallest in amount, extent or degree." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000467 ! present +created_by: george +creation_date: 2009-10-06T04:33:48Z + +[Term] +id: PATO:0002124 +name: laminar +def: "A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-10-06T04:37:14Z + +[Term] +id: PATO:0002125 +name: nodular +def: "A quality inhering in a bearer by virtue of the bearer's consisting a knot-like mass." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-10-06T04:40:06Z + +[Term] +id: PATO:0002126 +name: osseous +def: "A quality inhering in a bearer by virtue of the bearer's containing bone." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "bony" EXACT [] +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-06T04:42:11Z + +[Term] +id: PATO:0002127 +name: scirrhous +def: "A hardness quality of being rigid and resistant to pressure and fibrous." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000386 ! hard +created_by: george +creation_date: 2009-10-06T04:49:30Z + +[Term] +id: PATO:0002128 +name: serous +def: "A quality inhering a bearer by virtue of the bearer's containing or resembling serum." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-06T04:51:16Z + +[Term] +id: PATO:0002129 +name: neoplastic, invasive +def: "A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0002011 ! neoplastic +disjoint_from: PATO:0002132 ! neoplastic, non-invasive +created_by: george +creation_date: 2009-10-06T05:02:45Z + +[Term] +id: PATO:0002130 +name: neoplastic, deeply invasive +def: "A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues to a large extend." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002129 ! neoplastic, invasive +created_by: george +creation_date: 2009-10-06T05:03:13Z + +[Term] +id: PATO:0002131 +name: abduction +def: "A displaced angular placement quality inhering in a body part by virtue of the bearer's movement away from the medial plane of the body." [wikipedia:wikipedia] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0002168 ! displaced to +created_by: george +creation_date: 2009-10-13T06:38:53Z + +[Term] +id: PATO:0002132 +name: neoplastic, non-invasive +def: "A disposition inhering in a tumour by virtue of the bearer's disposition not to invade surrounding tissues." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0002011 ! neoplastic +created_by: george +creation_date: 2009-10-06T05:04:18Z + +[Term] +id: PATO:0002133 +name: adduction +def: "A displaced angular placement quality inhering in a body part by virtue of the bearer's movement closer the medial plane of the body." [wikipedia:wikipedia] +comment: This term is also used in reference to the operation of the muscle in anatomy or musculature. +subset: attribute_slim +subset: relational_slim +is_a: PATO:0002168 ! displaced to +created_by: george +creation_date: 2009-10-13T06:41:39Z + +[Term] +id: PATO:0002134 +name: fibrillary +def: "A composition quaity inhering in a bearer by virtue of the bearer's containing of or pertaining to fibrils, or nanoscale fibers." [wikipedia:wikipedia] +subset: value_slim +synonym: "fibrillate" EXACT [] +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-26T12:53:47Z + +[Term] +id: PATO:0002135 +name: delayed closure +def: "A duration quality of a process inhering in a bearer by virtue of the bearer's delay to complete the closure of the opening of an anatomical entity." [PATOC:GVG] +is_a: PATO:0000502 ! delayed +created_by: george +creation_date: 2009-10-26T01:03:17Z + +[Term] +id: PATO:0002136 +name: radiopacity +def: "A quality inhering in a bearer by virtue of the bearer's relative inability of electromagnetism to pass through a particular material, particularly X-rays." [Wikipedia:Wikipedia] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001291 ! electromagnetic (EM) radiation quality +created_by: george +creation_date: 2009-10-26T01:14:38Z + +[Term] +id: PATO:0002137 +name: radiopaque +def: "A readiopacity quality inhering in a bearer by virtue of the bearer's prevention of the passage of electromagnetic radiation." [Wikipedia:Wikipedia] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002136 ! radiopacity +created_by: george +creation_date: 2009-10-26T01:16:08Z + +[Term] +id: PATO:0002138 +name: edibility +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be eaten." [PATOC:VO] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "edibleness" EXACT [] +is_a: PATO:0001018 ! physical quality +created_by: george +creation_date: 2009-10-26T01:20:24Z + +[Term] +id: PATO:0002139 +name: edible +def: "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as food." [PATOC:VO] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002138 ! edibility +disjoint_from: PATO:0002140 ! inedible +property_value: RO:0002604 PATO:0002140 +created_by: george +creation_date: 2009-10-26T01:21:34Z + +[Term] +id: PATO:0002140 +name: inedible +def: "A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food." [PATOC:VO] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002138 ! edibility +property_value: RO:0002604 PATO:0002139 +created_by: george +creation_date: 2009-10-26T01:22:27Z + +[Term] +id: PATO:0002141 +name: irregular density +def: "A density quality which lacks pattern." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001019 ! mass density +created_by: george +creation_date: 2009-10-28T01:57:53Z + +[Term] +id: PATO:0002142 +name: bracket +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2009-10-28T03:14:54Z + +[Term] +id: PATO:0002143 +name: sloped downward +subset: value_slim +is_a: PATO:0001481 ! sloped +created_by: george +creation_date: 2009-10-30T02:18:39Z + +[Term] +id: PATO:0002144 +name: increased radiopacity +def: "A radiopacity that is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002136 ! radiopacity +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0002145 +created_by: george +creation_date: 2009-10-30T03:30:39Z + +[Term] +id: PATO:0002145 +name: decreased radiopacity +def: "A radiopacity that is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002136 ! radiopacity +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0002144 +created_by: george +creation_date: 2009-10-30T03:31:31Z + +[Term] +id: PATO:0002146 +name: virulence +def: "A quality inhering in a bearer by virtue of the severity of infectious disease caused by the bearer in a target organism." [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0001-8941-3984] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001995 ! organismal quality +created_by: george +creation_date: 2009-10-30T05:04:06Z + +[Term] +id: PATO:0002147 +name: reduced virulence +def: "A virulence that is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "attenuated" EXACT [] +is_a: PATO:0002146 ! virulence +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0002148 +created_by: george +creation_date: 2009-10-30T05:05:02Z + +[Term] +id: PATO:0002148 +name: increased virulence +def: "A virulence that is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002146 ! virulence +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0002147 +created_by: george +creation_date: 2009-10-30T05:13:10Z + +[Term] +id: PATO:0002149 +name: ivory +def: "A quality inhering in a bearer by virtue of the bearer exhibiting increased density resulting in exhibiting increased degree of radiopacity (in X-rays)." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001788 ! increased mass density +created_by: george +creation_date: 2009-11-03T02:59:08Z + +[Term] +id: PATO:0002150 +name: splayed caudal +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the part of the body from which the tail arises." [PATOC:GVG] +subset: value_slim +synonym: "splayed inferior (human torso)" EXACT [] +synonym: "splayed posterior" EXACT [] +is_a: PATO:0001785 ! splayed +created_by: george +creation_date: 2009-11-06T01:13:10Z + +[Term] +id: PATO:0002151 +name: splayed dorsal +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the back or upper surface of an organism." [PATOC:GVG] +subset: value_slim +synonym: "splayed posterior (human torso)" RELATED [] +is_a: PATO:0001785 ! splayed +created_by: george +creation_date: 2009-11-06T01:14:09Z + +[Term] +id: PATO:0002152 +name: splayed lateral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001785 ! splayed +created_by: george +creation_date: 2009-11-06T01:14:22Z + +[Term] +id: PATO:0002153 +name: splayed rostral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the front of an organism." [PATOC:GVG] +subset: value_slim +synonym: "splayed anterior" EXACT [] +synonym: "splayed superior (human torso)" EXACT [] +is_a: PATO:0001785 ! splayed +created_by: george +creation_date: 2009-11-06T01:14:31Z + +[Term] +id: PATO:0002154 +name: splayed ventral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the abdomen of an organism." [PATOC:GVG] +subset: value_slim +synonym: "splayed anterior (human torso)" EXACT [] +synonym: "splayed inferior (human head)" EXACT [] +is_a: PATO:0001785 ! splayed +created_by: george +creation_date: 2009-11-06T01:14:42Z + +[Term] +id: PATO:0002155 +name: medially rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the middle of an organism." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "internally rotated" EXACT [] +is_a: PATO:0001599 ! rotated +created_by: george +creation_date: 2009-11-06T02:23:28Z + +[Term] +id: PATO:0002156 +name: laterally rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the side of an organism." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "externally rotated" EXACT [] +is_a: PATO:0001599 ! rotated +created_by: george +creation_date: 2009-11-06T02:25:10Z + +[Term] +id: PATO:0002157 +name: partially dislocated +alt_id: PATO:0002160 +def: "A positional quality inhering in a bearer by virtue of the bearer's being slightly out of its usual or proper place, or position." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "partial dislocated towards" EXACT [] +synonym: "subluxation" EXACT [] +synonym: "suluxated towards" EXACT [] +is_a: PATO:0001852 ! dislocated +created_by: george +creation_date: 2009-11-06T03:34:15Z + +[Term] +id: PATO:0002161 +name: bicornuate +def: "Having two horns or horn-shaped branches." [mondofacto:mondofacto] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: george +creation_date: 2009-11-11T02:37:52Z + +[Term] +id: PATO:0002162 +name: high-arched +def: "A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch of an increased apical height." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001594 ! arched +is_a: PATO:0002305 ! increased object quality +created_by: george +creation_date: 2009-11-26T02:34:06Z + +[Term] +id: PATO:0002163 +name: herniated into +def: "A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it into the surface or boundary of another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001645 ! protruding into +created_by: george +creation_date: 2009-11-26T04:50:43Z + +[Term] +id: PATO:0002164 +name: curved medial +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the middle." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: george +creation_date: 2009-12-02T10:06:21Z + +[Term] +id: PATO:0002165 +name: drooping +def: "To bent or hang downwards." [thefreedictionary.:thefreedictionary.] +subset: value_slim +synonym: "sagging" EXACT [] +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2009-12-02T03:32:55Z + +[Term] +id: PATO:0002166 +name: premature closure +def: "A duration quality of a process inhering in a bearer by virtue of the bearer's premature completion of the closure of the opening of an anatomical entity." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000694 ! premature +created_by: george +creation_date: 2009-12-02T04:10:10Z + +[Term] +id: PATO:0002167 +name: herniated out of +def: "A protruding quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded out of the surface or boundary of another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001646 ! protruding out of +created_by: george +creation_date: 2009-12-02T05:19:32Z + +[Term] +id: PATO:0002168 +name: displaced to +def: "An angular placement quality inhering in a bearer by virtue of the bearer being changed in position in relation to another entity." [PATOC:GVG] +subset: relational_slim +synonym: "mislocalised to" RELATED [] +is_a: PATO:0000133 ! orientation +created_by: george +creation_date: 2010-01-14T04:45:18Z + +[Term] +id: PATO:0002169 +name: split medially +def: "A shape quality inhering in a bearer by virtue of the bearer's being split along the median axis." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001786 ! split +created_by: george +creation_date: 2010-02-03T04:37:15Z + +[Term] +id: PATO:0002170 +name: split laterally +def: "A shape quality inhering in a bearer by virtue of the bearer's being split asymmetrically on one side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001786 ! split +created_by: george +creation_date: 2010-02-03T04:37:40Z + +[Term] +id: PATO:0002171 +name: split bilaterally +def: "A shape quality inhering in a bearer by virtue of the bearer's being split on two side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001786 ! split +created_by: george +creation_date: 2010-02-03T04:37:53Z + +[Term] +id: PATO:0002172 +name: split radially +def: "A shape quality inhering in a bearer by virtue of the bearer's being split along the radial axis." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001786 ! split +created_by: george +creation_date: 2010-02-03T04:42:35Z + +[Term] +id: PATO:0002173 +name: misaligned towards +def: "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning towards an additional entity." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0001654 ! misaligned with +created_by: George Gkoutos +creation_date: 2010-02-22T03:18:17Z + +[Term] +id: PATO:0002174 +name: misaligned away from +def: "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning away from an additional entity." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0001654 ! misaligned with +created_by: George Gkoutos +creation_date: 2010-02-22T03:18:48Z + +[Term] +id: PATO:0002175 +name: deviation +def: "A spatial quality inhering in a bearer by virtue of the bearer's changed direction of position towards another entity." [PATO:GVG] +subset: attribute_slim +is_a: PATO:0000060 ! spatial pattern +created_by: George Gkoutos +creation_date: 2010-02-25T09:14:42Z + +[Term] +id: PATO:0002176 +name: deviation towards the lateral side +def: "A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002175 ! deviation +created_by: George Gkoutos +creation_date: 2010-02-25T09:16:04Z + +[Term] +id: PATO:0002177 +name: deviation towards the medial side +def: "A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the middle." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002175 ! deviation +created_by: George Gkoutos +creation_date: 2010-02-25T09:16:56Z + +[Term] +id: PATO:0002178 +name: mislocalised radially +def: "A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position around a central point or axis." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000628 ! mislocalised +created_by: George Gkoutos +creation_date: 2010-02-25T11:24:58Z + +[Term] +id: PATO:0002179 +name: mislocalised proximally +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards to point of attachment or origin." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000628 ! mislocalised +created_by: George Gkoutos +creation_date: 2010-02-25T12:34:48Z + +[Term] +id: PATO:0002180 +name: straight +def: "A shape quality inhering in a bearer by virtue of the bearer's being free of curves, bends, or angles." [merriam-webster:merriam-webster] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2010-02-28T08:54:59Z + +[Term] +id: PATO:0002181 +name: displaced +def: "A positional quality inhering in a bearer by virtue the bearer's being changed in position." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000140 ! position +created_by: George Gkoutos +creation_date: 2010-03-01T02:56:33Z + +[Term] +id: PATO:0002182 +name: molecular quality +alt_id: PATO:0002061 +def: "A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc." [PATOC:GVG] +synonym: "relational molecular quality" EXACT [] +is_a: PATO:0001241 ! physical object quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:18:15Z + +[Term] +id: PATO:0002183 +name: cyclicity +def: "A molecular quality that inheres in a molecular entity by virtue of whether that there is a presence of cycles in the connection of the atoms within the molecular entity." [PATOC:JH] +subset: value_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:19:46Z + +[Term] +id: PATO:0002184 +name: cyclic cyclicity +def: "Cyclic cyclicity inheres in a molecule when the atoms of the molecule do contain at least one cycle in the atom-atom connection paths (through bonds)." [PATOC:JH] +subset: value_slim +is_a: PATO:0002183 ! cyclicity +created_by: George Gkoutos +creation_date: 2010-03-10T03:20:54Z + +[Term] +id: PATO:0002185 +name: acyclic cyclicity +def: "Acyclic cyclicity inheres in a molecule when the atoms within the molecule do not contain at least one cycle in the atom-atom connection paths (through the bonds)." [PATOC:JH] +subset: value_slim +is_a: PATO:0002183 ! cyclicity +created_by: George Gkoutos +creation_date: 2010-03-10T03:21:39Z + +[Term] +id: PATO:0002186 +name: polarity +def: "A molecular quality that inheres in a molecular entity by virtue of whether or not the molecular entity has a separation of electric charge which leads to the molecule having an electric dipole." [PATOC:JH] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:22:04Z + +[Term] +id: PATO:0002187 +name: polar polarity +def: "Polar polarity is a quality that inheres in a molecular entity when the molecular entity is polar, i.e. does possess an electric dipole." [PATOC:JH] +subset: value_slim +is_a: PATO:0002186 ! polarity +disjoint_from: PATO:0002188 ! nonpolar polarity +created_by: George Gkoutos +creation_date: 2010-03-10T03:22:49Z + +[Term] +id: PATO:0002188 +name: nonpolar polarity +def: "A molecular quality which inheres in a molecular entity when the molecular entity does not possess an electrical dipole." [PATOC:JH] +subset: value_slim +is_a: PATO:0002186 ! polarity +created_by: George Gkoutos +creation_date: 2010-03-10T03:24:01Z + +[Term] +id: PATO:0002189 +name: electric polarizability +def: "The ease of distortion of the electron cloud of a molecular entity by an electric field." [PATOC:JH] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:24:47Z + +[Term] +id: PATO:0002190 +name: aromaticity +def: "A molecular quality that inheres in a molecular entity by virtue of the presence of a conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone." [PATOC:JH] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:25:27Z + +[Term] +id: PATO:0002191 +name: aromatic +def: "A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone." [PATOC:JH] +subset: value_slim +is_a: PATO:0002190 ! aromaticity +disjoint_from: PATO:0002192 ! non-aromatic +property_value: RO:0002604 PATO:0002192 +created_by: George Gkoutos +creation_date: 2010-03-10T03:25:59Z + +[Term] +id: PATO:0002192 +name: non-aromatic +def: "A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic." [PATOC:JH] +subset: value_slim +is_a: PATO:0002190 ! aromaticity +property_value: RO:0002604 PATO:0002191 +created_by: George Gkoutos +creation_date: 2010-03-10T03:26:41Z + +[Term] +id: PATO:0002193 +name: electric charge +def: "A molecular quality that inheres in a molecular entity by virtue of the overall electric charge of the molecule, which is due to a comparison between the total number of electrons and the total number of protons." [PATOC:JH] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:28:54Z + +[Term] +id: PATO:0002194 +name: neutral charge +def: "A quality which inheres in a molecular entity by virtue of the molecular entity possessing the same amount of electrons overall as protons, thus having an overall neutral charge." [PATOC:JH] +subset: value_slim +is_a: PATO:0002193 ! electric charge +disjoint_from: PATO:0002195 ! positive charge +disjoint_from: PATO:0002196 ! negative charge +created_by: George Gkoutos +creation_date: 2010-03-10T03:29:37Z + +[Term] +id: PATO:0002195 +name: positive charge +def: "A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge." [PATOC:JH] +subset: value_slim +is_a: PATO:0002193 ! electric charge +disjoint_from: PATO:0002196 ! negative charge +property_value: RO:0002604 PATO:0002196 +created_by: George Gkoutos +creation_date: 2010-03-10T03:30:06Z + +[Term] +id: PATO:0002196 +name: negative charge +def: "A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge." [PATOC:JH] +subset: value_slim +is_a: PATO:0002193 ! electric charge +property_value: RO:0002604 PATO:0002195 +created_by: George Gkoutos +creation_date: 2010-03-10T03:30:39Z + +[Term] +id: PATO:0002197 +name: electronegativity +def: "A quality that describes the power of an atom to attract electrons to itself ." [PATOC:JH] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:31:15Z + +[Term] +id: PATO:0002198 +name: quality of a substance +def: "A quality inhering in a bearer by virtue of its constitution." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality +created_by: George Gkoutos +creation_date: 2010-03-15T04:35:27Z + +[Term] +id: PATO:0002199 +name: meltability +def: "A quality which inheres in a substance by virtue of the ease with which the substance can be changed from a solid to a liquid state especially by the application of heat." [PATOC:JH] +subset: attribute_slim +is_a: PATO:0002198 ! quality of a substance +created_by: George Gkoutos +creation_date: 2010-03-15T04:36:57Z + +[Term] +id: PATO:0002200 +name: vaporizability +def: "A quality which inheres in a substance by virtue of the ease with which the substance can be changed into a gaseous state." [PATOC:JH] +subset: attribute_slim +is_a: PATO:0002198 ! quality of a substance +created_by: George Gkoutos +creation_date: 2010-03-15T04:38:02Z + +[Term] +id: PATO:0002201 +name: handedness +def: "A behavioral quality inhering ina bearer by virtue of the bearer's unequal distribution of fine motor skill between its left and right hands or feet." [birnlex:2178] +comment: Adapted from Wikipedia and the birnlex term that is dbxref'd. Added on behalf of OBI at March 2010 workshop. +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000186 ! behavioral quality +created_by: haendel +creation_date: 2010-03-22T05:48:33Z + +[Term] +id: PATO:0002202 +name: left handedness +def: "Handedness where the organism preferentially uses the left hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot." [birnlex:2038] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002201 ! handedness +created_by: haendel +creation_date: 2010-03-22T05:49:06Z + +[Term] +id: PATO:0002203 +name: right handedness +def: "Handedness where the organism preferentially uses the right hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot." [birnlex:2184] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002201 ! handedness +created_by: haendel +creation_date: 2010-03-22T05:49:19Z + +[Term] +id: PATO:0002204 +name: ambidextrous handedness +def: "Handedness where the organism exhibits no overall dominance in the use of right or left hand or foot in the performance of tasks that require one hand or foot or a dominant hand or foot." [birnlex:2042] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002201 ! handedness +created_by: haendel +creation_date: 2010-03-22T05:49:30Z + +[Term] +id: PATO:0002205 +name: capacitance +def: "A quality inhering in a bearer by virtue of the bearer's ability to hold an electrical charge." [Wikipedia:Wikipedia] +comment: Capacitance is also a measure of the amount of electrical energy stored (or separated) for a given electric potential. +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-25T09:42:51Z + +[Term] +id: PATO:0002206 +name: neonatal +def: "A maturity quality inhering to a bearer by virtue of the bearer's being at the point or short after birth." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000261 ! maturity +created_by: George Gkoutos +creation_date: 2010-05-07T12:11:47Z + +[Term] +id: PATO:0002207 +name: insertion depth +def: "A quality that is the distance between the end of the inserted object and the surface of the object into which it penetrates." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0000040 ! distance +created_by: George Gkoutos +creation_date: 2010-05-14T11:40:24Z + +[Term] +id: PATO:0002208 +name: spoon-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a spoon." [thefreedictionary:http\://www.thefreedictionary.com/spoon-shaped] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: george +creation_date: 2010-07-08T12:13:12Z + +[Term] +id: PATO:0002209 +name: incisiform +def: "A shape quality inhering in a bearer by virtue of the bearer's having the shape of an incisor tooth." [thefreedictionary:http\://www.thefreedictionary.com/incisiform] +subset: value_slim +is_a: PATO:0001419 ! sharp +created_by: george +creation_date: 2010-07-08T12:16:04Z + +[Term] +id: PATO:0002210 +name: bulbous +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a teardrop." [PATOC:GVG] +subset: value_slim +synonym: "bulb-shaped" EXACT [] +synonym: "bulblike" EXACT [] +synonym: "swollen" RELATED [] +is_a: PATO:0001865 ! spheroid +created_by: george +creation_date: 2010-07-08T12:19:08Z + +[Term] +id: PATO:0002211 +name: recurved +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or inward." [merriam-webster:http\://www.merriam-webster.com/dictionary/recurved] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: george +creation_date: 2010-07-08T12:26:45Z + +[Term] +id: PATO:0002212 +name: slender +def: "A shape quality inhering in a bearer by virtue of the bearer's being small or narrow in circumference or width in proportion to length or height." [merriam-webster:http\://www.merriam-webster.com/dictionary/slender] +subset: value_slim +synonym: "gracile" RELATED [] +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2010-07-08T01:32:26Z + +[Term] +id: PATO:0002213 +name: obclavate +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: george +creation_date: 2010-07-08T01:47:09Z + +[Term] +id: PATO:0002214 +name: bilobed +def: "A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having two lobes." [thefreedictionary:http\://www.thefreedictionary.com/bilobed] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001979 ! lobed +created_by: george +creation_date: 2010-07-08T01:54:08Z + +[Term] +id: PATO:0002215 +name: falciform +def: "A shape quality inhering in a bearer by virtue of the bearer's having the shape of a scythe or sickle." [merriam-webster:http\://www.merriam-webster.com/dictionary/falciform] +subset: value_slim +synonym: "falcate" EXACT [] +synonym: "hooked" EXACT [] +synonym: "scythe-shaped" EXACT [] +synonym: "sickle-shaped" EXACT [] +synonym: "unciform" EXACT [] +synonym: "uncinate" EXACT [] +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2010-07-08T01:57:46Z + +[Term] +id: PATO:0002216 +name: ubiquinated +def: "A molecular quality that pertains to the post-translational modification of a protein by the covalent attachment of one or more ubiquitin monomer." [neurolex:http\://neurolex.org/] +subset: value_slim +synonym: "Ubiquitylation" RELATED [] +is_a: PATO:0002182 ! molecular quality +created_by: george +creation_date: 2010-07-08T02:00:37Z + +[Term] +id: PATO:0002217 +name: nitrated +def: "A molecular quality inhering in a bearer by virtue of the bearer's being combined, or impregnated, with nitric acid, or some of its compounds." [neurolex:http\://neurolex.org/wiki/Category\:Nitrated_Molecular_Quality] +subset: value_slim +is_a: PATO:0002182 ! molecular quality +created_by: george +creation_date: 2010-07-08T02:04:03Z + +[Term] +id: PATO:0002218 +name: demyelinated +def: "A quality inhering in a bearer by virtue of the bearer's loss of myelin sheath." [thefreedictionary:http\://www.thefreedictionary.com/demyelinated] +comment: For example loss of myelin sheath from a normally myelinated axon or dendrite. +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2010-07-08T02:08:06Z + +[Term] +id: PATO:0002219 +name: fan-shaped +def: "A quality inhering in a bearer that is shaped in the form of a fan." [thefreedictionary:http\://www.thefreedictionary.com/fan-shaped] +subset: value_slim +synonym: "fan-like" EXACT [] +is_a: PATO:0002006 ! 2-D shape +created_by: george +creation_date: 2010-07-09T01:43:42Z + +[Term] +id: PATO:0002220 +name: phosphorylated +def: "A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group." [wikipedia:en.wikipedia.org/wiki/Phosphorylated] +subset: value_slim +is_a: PATO:0002262 ! phosphorylation +disjoint_from: PATO:0002263 ! dephosphorylated +property_value: RO:0002604 PATO:0002263 +created_by: george +creation_date: 2010-07-09T01:50:14Z + +[Term] +id: PATO:0002221 +name: increased phosphorylation +def: "A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups." [Wikipedia:http\://en.wiktionary.org/wiki/hyperphosphorylated] +subset: value_slim +synonym: "hyperphosphorylated" EXACT [] +is_a: PATO:0002220 ! phosphorylated +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0002222 +created_by: george +creation_date: 2010-07-09T01:51:52Z + +[Term] +id: PATO:0002222 +name: decreased phosphorylation +def: "A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully." [Wikipedia:http\://en.wiktionary.org/wiki/hypophosphorylated] +subset: value_slim +synonym: "hypophosporylated" EXACT [] +is_a: PATO:0002220 ! phosphorylated +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0002221 +created_by: george +creation_date: 2010-07-09T01:54:22Z + +[Term] +id: PATO:0002223 +name: oxidized +def: "A quality inhering in a bearer by virtue of the bearer's having reacted with oxygen, or been modified by oxidation (the reaction in which the atoms of an element lose electrons and the valence of the element increases)." [Wikipedia:http\://en.wiktionary.org/wiki/oxidized] +subset: value_slim +is_a: PATO:0002182 ! molecular quality +created_by: george +creation_date: 2010-07-09T01:59:35Z + +[Term] +id: PATO:0002224 +name: V-shaped +def: "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter V." [PATOC:JE] +subset: value_slim +is_a: PATO:0001977 ! angular +created_by: george +creation_date: 2010-07-13T04:12:13Z + +[Term] +id: PATO:0002225 +name: L-shaped +def: "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter L." [PATOC:JE] +subset: value_slim +is_a: PATO:0001977 ! angular +created_by: george +creation_date: 2010-07-13T04:14:59Z + +[Term] +id: PATO:0002226 +name: subcylindrical +def: "A cylindrical shape quality inhering in a bearer by virtue of the bearer's being imperfectly cylindrical or approximately cylindrical." [url:http\://www.thefreedictionary.com/Subcylindrical] +subset: value_slim +is_a: PATO:0001873 ! cylindrical +created_by: george +creation_date: 2010-07-13T04:22:30Z + +[Term] +id: PATO:0002227 +name: cup-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a cup." [url:http\://www.thefreedictionary.com/cup-shaped] +subset: value_slim +synonym: "cup-like" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape +created_by: george +creation_date: 2010-07-13T04:29:32Z + +[Term] +id: PATO:0002228 +name: acuminate +def: "A tapered shape quality inhering in a bearer by virtue of the bearer's tapering gradually to a sharp point." [url:http\://www.thefreedictionary.com/acuminate] +subset: value_slim +is_a: PATO:0001500 ! tapered +created_by: george +creation_date: 2010-07-15T09:03:18Z + +[Term] +id: PATO:0002229 +name: subrectangular +def: "A quadrangular shape quality inhering in a bearer by virtue of the bearer's being approximately rectangular." [url:http\://dictionary.reference.com/browse/subrectangular?qsrc=2446&o=100074] +subset: value_slim +is_a: PATO:0001988 ! quadrangular +created_by: george +creation_date: 2010-07-19T12:18:57Z + +[Term] +id: PATO:0002230 +name: subtriangular +def: "A triangular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, triangular." [url:http\://www.thefreedictionary.com/Subtriangular] +subset: value_slim +is_a: PATO:0001875 ! triangular +created_by: george +creation_date: 2010-07-19T12:20:59Z + +[Term] +id: PATO:0002231 +name: multifid +def: "A split shape quality inhering in a bearer by virtue of the bearer's having or being divided into many lobes or similar segments." [url:http\://www.thefreedictionary.com/multifid] +subset: value_slim +is_a: PATO:0001786 ! split +created_by: george +creation_date: 2010-07-19T12:23:02Z + +[Term] +id: PATO:0002232 +name: semicircular +def: "A 2-D shape quality inhering in a bearer by virtue of the bearer's having shape or form of half a circle." [url:http\://www.thefreedictionary.com/semicircle] +subset: value_slim +synonym: "half circle" EXACT [] +synonym: "semicircle" EXACT [] +is_a: PATO:0002006 ! 2-D shape +created_by: george +creation_date: 2010-07-19T01:02:27Z + +[Term] +id: PATO:0002233 +name: far from +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located far (not close to) in space in relation to another entity." [PATOC:PM] +subset: relational_slim +subset: value_slim +synonym: "distant from" EXACT [] +synonym: "remote from" EXACT [] +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2010-07-19T02:43:53Z + +[Term] +id: PATO:0002234 +name: emarginate +def: "A notched shape quality inhering in a bearer by virtue of the bearer's having a notched tip or edge." [url:http\://www.thefreedictionary.com/emarginate] +subset: value_slim +is_a: PATO:0001495 ! notched +created_by: george +creation_date: 2010-07-19T04:25:58Z + +[Term] +id: PATO:0002235 +name: blade-like +def: "A tapered shape quality inhering in a bearer by virtue of the bearer's being flat, slender, and tapering to a point." [PATOC:JE] +subset: value_slim +synonym: "blade-shaped" EXACT [] +synonym: "ensiform" EXACT [] +synonym: "sword-like" EXACT [] +synonym: "sword-shaped" EXACT [] +is_a: PATO:0001500 ! tapered +created_by: george +creation_date: 2010-07-19T04:29:05Z + +[Term] +id: PATO:0002236 +name: aliform +def: "Shape quality inhering in a bearer by virtue of the bearer's being shaped like a wing." [url:http\://www.thefreedictionary.com/aliform] +subset: value_slim +synonym: "wing-shaped" EXACT [] +is_a: PATO:0002006 ! 2-D shape +created_by: george +creation_date: 2010-07-23T02:19:14Z + +[Term] +id: PATO:0002237 +name: retrorse +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or downward." [url:http\://www.thefreedictionary.com/retrorse] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: george +creation_date: 2010-07-23T02:22:09Z + +[Term] +id: PATO:0002238 +name: antrorse +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved forward or upward." [url:http\://www.thefreedictionary.com/antrorse] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: george +creation_date: 2010-07-23T02:22:56Z + +[Term] +id: PATO:0002239 +name: hourglass-shaped +def: "A concave 3-D shape that inheres in the bearer by virtue of the bearer's nearly) symmetric shape wide at its ends and narrow in the middle, resembling the figure of number 8." [url:http\://en.wikipedia.org/wiki/Hourglass-shaped] +subset: value_slim +synonym: "figure 8 shaped" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape +created_by: george +creation_date: 2010-07-23T02:25:24Z + +[Term] +id: PATO:0002240 +name: teardrop-shaped +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop." [url:wordnetweb.princeton.edu/perl/webwn] +subset: value_slim +synonym: "drop shaped" EXACT [] +is_a: PATO:0002007 ! convex 3-D shape +created_by: george +creation_date: 2010-07-23T02:31:11Z + +[Term] +id: PATO:0002241 +name: trilobed +def: "A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having three lobes." [url:http\://www.thefreedictionary.com/trilobed] +subset: value_slim +is_a: PATO:0001979 ! lobed +created_by: george +creation_date: 2010-07-28T12:57:46Z + +[Term] +id: PATO:0002242 +name: velocity +def: "A physical quality inhering in a bearer by virtue of the bearer's rate of change of the position." [url:http\://en.wikipedia.org/wiki/Velocity] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001906 ! movement quality +created_by: george +creation_date: 2010-07-28T02:52:48Z + +[Term] +id: PATO:0002243 +name: fluid flow rate +def: "A physical quality inhering in a fluid (liquid or gas) by virtue of the amount of fluid which passes through a given surface per unit time." [url:http\://en.wikipedia.org/wiki/Volumetric_flow_rate] +subset: attribute_slim +subset: scalar_slim +synonym: "volume flow rate" EXACT [] +synonym: "volumetric flow rate" EXACT [] +is_a: PATO:0001574 ! flow rate +created_by: george +creation_date: 2010-07-28T03:00:20Z + +[Term] +id: PATO:0002244 +name: mass flow rate +def: "A flow rate quality inhering in a substance by virtue of the mass of substance which passes through a given surface per unit time." [url:http\://en.wikipedia.org/wiki/Mass_flow_rate] +subset: attribute_slim +is_a: PATO:0001574 ! flow rate +created_by: george +creation_date: 2010-07-28T03:02:03Z + +[Term] +id: PATO:0002245 +name: increased force +def: "A force which relative high." [PATOC:GVG] +subset: value_slim +synonym: "increased force amplitude" EXACT [] +is_a: PATO:0001035 ! force +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0002246 +created_by: george +creation_date: 2010-08-04T11:12:20Z + +[Term] +id: PATO:0002246 +name: decreased force +def: "A force which is relative low." [PATOC:GVG] +subset: value_slim +synonym: "decreased force amplitude" EXACT [] +is_a: PATO:0001035 ! force +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0002245 +created_by: george +creation_date: 2010-08-04T11:13:13Z + +[Term] +id: PATO:0002247 +name: degree of pigmentation +def: "A quality inhering in a bearer by virtue of the bearer's having or lacking of substances produced by living organisms that have a color resulting from selective color absorption." [url:http\://en.wikipedia.org/wiki/Biological_pigment] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000141 ! structure +relationship: correlates_with PATO:0000014 ! color +created_by: george +creation_date: 2010-08-09T04:14:00Z + +[Term] +id: PATO:0002248 +name: pigmented +def: "A degree of pigmentation quality inhering in a bearer by virtue of the bearer's having substances produced by living organisms that have a color resulting from selective color absorption." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002247 ! degree of pigmentation +disjoint_from: PATO:0002249 ! unpigmented +property_value: RO:0002604 PATO:0002249 +created_by: george +creation_date: 2010-08-09T04:16:49Z + +[Term] +id: PATO:0002249 +name: unpigmented +def: "A degree of pigmentation quality inhering in a bearer by virtue of the bearer's lacking substances produced by living organisms that have a color resulting from selective color absorption." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "depigmented" EXACT [] +is_a: PATO:0002247 ! degree of pigmentation +property_value: RO:0002604 PATO:0002248 +created_by: george +creation_date: 2010-08-09T04:17:04Z + +[Term] +id: PATO:0002250 +name: increased pigmentation +def: "A degree of pigmentation quality that is relatively high." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "hyperpigmented" EXACT [] +is_a: PATO:0002248 ! pigmented +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0002251 +created_by: george +creation_date: 2010-08-09T04:17:19Z + +[Term] +id: PATO:0002251 +name: decreased pigmentation +def: "A degree of pigmentation quality that is relative low." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "hypopigmented" EXACT [] +is_a: PATO:0002248 ! pigmented +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0002250 +created_by: george +creation_date: 2010-08-09T04:17:37Z + +[Term] +id: PATO:0002252 +name: antero-posteriorly flattened +def: "A quality inhering in a bearer by virtue of the bearer's being flattened along the antero-posterior axis." [PATOC:JC] +subset: value_slim +synonym: "antero-posteriorly compressed" EXACT [] +is_a: PATO:0002254 ! flattened +created_by: george +creation_date: 2010-08-16T03:57:42Z + +[Term] +id: PATO:0002253 +name: platelike +def: "A quality inhering in a bearer by virtue of the bearer's being roundish, flattish shape, possibly with a slightly angled edge." [PATOC:CVC] +subset: value_slim +synonym: "plate-like" EXACT [] +is_a: PATO:0000407 ! flat +created_by: george +creation_date: 2010-08-16T03:57:48Z + +[Term] +id: PATO:0002254 +name: flattened +def: "A quality inhering in a bearer by virtue of the bearer's surface becoming more extended in a plane." [PATOC:CVS] +comment: Becoming flat but not necessarily completely flat. +subset: value_slim +synonym: "compressed" RELATED [] +is_a: PATO:0001591 ! curvature +created_by: george +creation_date: 2010-08-16T03:59:34Z + +[Term] +id: PATO:0002255 +name: grooved +def: "Texture quality inhering in a bearer by virtue of the bearer's being marked with one or more channels." [PATOC:JE] +subset: value_slim +synonym: "channeled" RELATED [] +synonym: "creased" RELATED [] +is_a: PATO:0000150 ! texture +created_by: george +creation_date: 2010-09-01T10:27:48Z + +[Term] +id: PATO:0002256 +name: tricuspidate +def: "A cuscpidate quality inhering in a bearer by virtue of the bearer possessing three cusps." [PATOC:WD] +subset: value_slim +synonym: "tricuspid" EXACT [] +is_a: PATO:0002257 ! multicuspidate +created_by: george +creation_date: 2010-09-08T02:21:50Z + +[Term] +id: PATO:0002257 +name: multicuspidate +def: "A cuscpidate quality inhering in a bearer by virtue of the bearer possessing more than one cusp." [PATOC:WD] +subset: value_slim +is_a: PATO:0001973 ! cuspidate +created_by: george +creation_date: 2010-09-08T02:23:22Z + +[Term] +id: PATO:0002258 +name: pointed +def: "A shape quality inhering in a bearer by virtue of the bearer's having a point." [PATOC:http\://www.merriam-webster.com/dictionary/pointed] +subset: value_slim +is_a: PATO:0001419 ! sharp +created_by: george +creation_date: 2010-09-08T03:15:16Z + +[Term] +id: PATO:0002259 +name: adjacent to +alt_id: PATO:0001771 +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located near in space in relation to another entity." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "approaches" EXACT [] +synonym: "close to" EXACT [] +synonym: "near to" EXACT [] +synonym: "vicinity of" EXACT [] +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2010-09-08T03:20:06Z + +[Term] +id: PATO:0002260 +name: semi erect +def: "A quality inhering in a bearer by virtue of the bearer's being partially upright in position or posture." [PATOC:GVG] +synonym: "semi upright" EXACT [] +is_a: PATO:0000622 ! erect +created_by: george +creation_date: 2010-09-08T03:27:21Z + +[Term] +id: PATO:0002261 +name: located in +def: "A spatial quality inhering in a bearer by virtue of the bearer's location within another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2010-09-09T09:36:56Z + +[Term] +id: PATO:0002262 +name: phosphorylation +def: "A quality inhering in a protein or a molecule by virtue of the addition of a phosphate (PO4) group to the bearer." [url:http\://en.wikipedia.org/wiki/Phosphorylation] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: george +creation_date: 2010-09-16T08:57:56Z + +[Term] +id: PATO:0002263 +name: dephosphorylated +def: "A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group." [url:http\://en.wikipedia.org/wiki/Dephosphorylation] +subset: value_slim +is_a: PATO:0002262 ! phosphorylation +property_value: RO:0002604 PATO:0002220 +created_by: george +creation_date: 2010-09-16T09:04:21Z + +[Term] +id: PATO:0002264 +name: organization quality +def: "A structural quality inhering in a bearer by virtue of the bearer's being arranged in a systematic fashion." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2010-09-16T10:22:52Z + +[Term] +id: PATO:0002265 +name: behavioural activity +def: "A behavioral quality of a process inhering in a bearer by virtue of the bearer's disposition to exhibit marked activity." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000186 ! behavioral quality +created_by: george +creation_date: 2010-09-21T06:56:58Z + +[Term] +id: PATO:0002266 +name: 3-D shape +def: "A shape that inheres in a 3 dimensional entity." [PATOC:OREGON] +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2010-10-05T12:31:16Z + +[Term] +id: PATO:0002267 +name: edge shape +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2010-10-05T12:34:31Z + +[Term] +id: PATO:0002268 +name: centered +def: "A positional quality inhering in a bearer by virtue of the bearer's being located in a position equidistant from edges." [PATOC:OREGON] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2010-10-05T01:09:32Z + +[Term] +id: PATO:0002269 +name: accumulation +def: "A structural quality of the collection or massing of one physical object within another physical object." [PATOC:CVC] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +synonym: "pooled" RELATED [] +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2010-10-26T01:57:02Z + +[Term] +id: PATO:0002270 +name: increased accumulation +def: "An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "accumulated" EXACT [] +is_a: PATO:0002269 ! accumulation +property_value: RO:0002604 PATO:0002271 +created_by: george +creation_date: 2010-10-26T02:00:20Z + +[Term] +id: PATO:0002271 +name: decreased accumulation +def: "An accumulation which is relative low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0002269 ! accumulation +property_value: RO:0002604 PATO:0002270 +created_by: george +creation_date: 2010-10-26T02:04:45Z + +[Term] +id: PATO:0002272 +name: parallel to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located at the same continuous distance relative to another object." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2010-10-26T02:07:42Z + +[Term] +id: PATO:0002273 +name: marbled +def: "Multicolored quality inhering in a bearer by virtue of the bearer's being colored with a variegated pattern resembling marble,." [url:http\://www.oed.com/] +subset: value_slim +is_a: PATO:0001533 ! multi-colored +created_by: george +creation_date: 2010-11-16T11:17:32Z + +[Term] +id: PATO:0002274 +name: mottled +def: "Multicolored quality inhering in a bearer by virtue of the bearer's being dappled with spots, patches, or blotches of different colors." [url:http\://www.oed.com/] +subset: value_slim +is_a: PATO:0001533 ! multi-colored +created_by: george +creation_date: 2010-11-16T11:22:57Z + +[Term] +id: PATO:0002275 +name: high contrast color pattern +def: "A color pattern quality inhering in a bearer by virtue of the bearer's color pattern in which light and dark colors (for example white and black) are codistributed to create a visual impression." [PATOC:WD] +subset: disposition_slim +is_a: PATO:0000019 ! color pattern +created_by: george +creation_date: 2010-11-16T11:24:15Z + +[Term] +id: PATO:0002276 +name: barred +def: "A color pattern inhering in a bearer by virtue of bearer's exhibiting vertical bars of one hue or degree of saturation crossing another." [PATOC:WD] +subset: value_slim +is_a: PATO:0001533 ! multi-colored +created_by: george +creation_date: 2010-11-16T11:30:40Z + +[Term] +id: PATO:0002277 +name: iridescent +def: "A quality of certain surfaces which appear to change colour as the angle of view changes." [url:http\://en.wikipedia.org/wiki/Iridescence] +is_a: PATO:0001615 ! variant color +created_by: george +creation_date: 2010-12-12T12:37:41Z + +[Term] +id: PATO:0002278 +name: articulated with +def: "A structural quality inhering in a bearer by virtue of the bearer's participating in a joint with another entity." [PATOC:WD] +subset: relational_slim +is_a: PATO:0001961 ! in contact with +created_by: george +creation_date: 2011-01-20T05:39:18Z + +[Term] +id: PATO:0002279 +name: tightly articulated with +def: "A structural quality inhering in a bearer by virtue of the bearer's being strongly articulated with another entity." [PATOC:WD] +subset: relational_slim +is_a: PATO:0002278 ! articulated with +created_by: george +creation_date: 2011-01-20T05:39:59Z + +[Term] +id: PATO:0002280 +name: broadly articulated with +def: "A structural quality inhering in a bearer by virtue of the bearer's possessing a broad surface in articulation with another entity." [PATOC:WD] +subset: relational_slim +is_a: PATO:0002278 ! articulated with +created_by: george +creation_date: 2011-01-20T05:40:29Z + +[Term] +id: PATO:0002281 +name: biscupidate +def: "A cuscpidate quality inhering in a bearer by virtue of the bearer possessing two cusps." [PATOC:GVG] +synonym: "bicuspid" EXACT [] +is_a: PATO:0002257 ! multicuspidate +created_by: george +creation_date: 2011-02-07T03:13:18Z + +[Term] +id: PATO:0002282 +name: increased mobility +def: "A mobility which is relative high." [PATO:GVG] +subset: value_slim +is_a: PATO:0000299 ! mobile +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0002283 +created_by: george +creation_date: 2011-03-09T09:16:03Z + +[Term] +id: PATO:0002283 +name: decreased mobility +def: "A mobility which is relative low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000299 ! mobile +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0002282 +created_by: george +creation_date: 2011-03-09T09:16:47Z + +[Term] +id: PATO:0002284 +name: tension +def: "A physical quality that pertains by virtue of a pulling force that is directed away from the bearer and attempts to stretch or elongate the bearer." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality +created_by: george +creation_date: 2011-03-10T08:41:21Z + +[Term] +id: PATO:0002285 +name: increased branchiness +def: "Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:CVS] +subset: value_slim +is_a: PATO:0000402 ! branched +property_value: RO:0002604 PATO:0002286 +created_by: george +creation_date: 2011-03-10T09:07:57Z + +[Term] +id: PATO:0002286 +name: decreased branchiness +def: "Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:CVS] +subset: value_slim +is_a: PATO:0000402 ! branched +property_value: RO:0002604 PATO:0002285 +created_by: george +creation_date: 2011-03-10T09:08:37Z + +[Term] +id: PATO:0002287 +name: increased elasticity +def: "An elasticity which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001171 ! elastic +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0002288 +created_by: George Gkoutos +creation_date: 2011-03-30T11:50:21Z + +[Term] +id: PATO:0002288 +name: decreased elasticity +def: "An elasticity which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001171 ! elastic +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0002287 +created_by: George Gkoutos +creation_date: 2011-03-30T11:50:39Z + +[Term] +id: PATO:0002289 +name: setose +def: "A hairy quality inhering in a bearer by virtue of the bearer's being covered with setae." [ISBN:0913424137] +comment: Setose as a label is used extensively to describe insect phenotypes that have hairy-like appearances (i.e., they are covered in setae, not the hairs of mammals). A bristle is a type of seta. +subset: value_slim +is_a: PATO:0000454 ! hairy +created_by: George Gkoutos +creation_date: 2011-04-04T08:44:10Z + +[Term] +id: PATO:0002290 +name: aplastic/hypoplastic +is_a: PATO:0001241 ! physical object quality +created_by: George Gkoutos +creation_date: 2011-04-18T05:11:33Z + +[Term] +id: PATO:0002291 +name: agenesis +def: "Absence of a tissue or organ due to failure to develop." [PATO:GVG] +is_a: PATO:0000462 ! absent +created_by: George Gkoutos +creation_date: 2011-04-18T05:17:34Z + +[Term] +id: PATO:0002292 +name: transient +def: "A structural quality inhering in a bearer by virtue of the bearer's underlying structure being capable of change." [PATOC:WD] +comment: For example, structures undergoing endochondral ossification change in composition from cartilaginous to ossified. +synonym: "transient structure" EXACT [] +is_a: PATO:0000141 ! structure +disjoint_from: PATO:0002293 ! permanent +created_by: George Gkoutos +creation_date: 2011-05-03T03:01:59Z + +[Term] +id: PATO:0002293 +name: permanent +def: "A structural quality inhering in a bearer by virtue of the bearer's underlying structure not changing over time." [PATOC:WD] +synonym: "permanent structure" EXACT [] +is_a: PATO:0000141 ! structure +created_by: George Gkoutos +creation_date: 2011-05-03T03:03:50Z + +[Term] +id: PATO:0002294 +name: scrobiculate +def: "A texture that is uniformly covered in short, oblong, or trench-like depressions." [Book:Book] +is_a: PATO:0000150 ! texture +created_by: George Gkoutos +creation_date: 2011-05-03T03:12:47Z + +[Term] +id: PATO:0002295 +name: areolate +def: "A surface feature shape inhering in a surface by virtue of the bearer's being divided by ridge-like structures into a number of small, irregular spaces." [Book:Book] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape +created_by: George Gkoutos +creation_date: 2011-05-17T07:57:45Z + +[Term] +id: PATO:0002296 +name: foveate +def: "A texture quality inhering in a surface by virtue of the bearer's being marked by the presence of small, shallow, regular depressions called fovae." [Book:Book] +subset: value_slim +synonym: "foveolate" RELATED [] +synonym: "pitted" RELATED [] +is_a: PATO:0000150 ! texture +created_by: George Gkoutos +creation_date: 2011-05-17T07:59:30Z + +[Term] +id: PATO:0002297 +name: decreased cellular motility +def: "A cellular motility which is lower relative to the normal or average." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001488 ! cellular motility +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0002298 + +[Term] +id: PATO:0002298 +name: increased cellular motility +def: "A cellular motility which is higher relative to the normal or average." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001488 ! cellular motility +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0002297 + +[Term] +id: PATO:0002299 +name: tubular +def: "A cylindrical shape that is hollow." [PATOC:GVG] +synonym: "tube like" EXACT [] +synonym: "tube-shaped" EXACT [] +synonym: "tubulate" EXACT [] +is_a: PATO:0001873 ! cylindrical +is_a: PATO:0002078 ! hollow +created_by: George Gkoutos +creation_date: 2011-06-08T06:33:50Z + +[Term] +id: PATO:0002300 +name: increased quality +def: "A quality that has a value that is increased compared to normal or average." [PATOC:GVG] +is_a: PATO:0000069 ! deviation(from_normal) +relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal +property_value: RO:0002604 PATO:0002301 +created_by: George Gkoutos +creation_date: 2011-06-16T06:39:43Z + +[Term] +id: PATO:0002301 +name: decreased quality +def: "A quality that has a value that is decreased compared to normal or average." [PATOC:GVG] +is_a: PATO:0000069 ! deviation(from_normal) +relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal +property_value: RO:0002604 PATO:0002300 +created_by: George Gkoutos +creation_date: 2011-06-16T06:40:15Z + +[Term] +id: PATO:0002302 +name: decreased process quality +def: "A quality of a process that has a value that is decreased compared to normal or average." [PATOC:GVG] +is_a: PATO:0001236 ! process quality +is_a: PATO:0002301 ! decreased quality +property_value: RO:0002604 PATO:0002304 +created_by: George Gkoutos +creation_date: 2011-06-16T06:50:59Z + +[Term] +id: PATO:0002303 +name: decreased object quality +def: "A quality of an object that has a value that is decreased compared to normal or average." [PATOC:GVG] +is_a: PATO:0001241 ! physical object quality +is_a: PATO:0002301 ! decreased quality +property_value: RO:0002604 PATO:0002305 +created_by: George Gkoutos +creation_date: 2011-06-16T06:51:54Z + +[Term] +id: PATO:0002304 +name: increased process quality +def: "A quality of a process that has a value that is increased compared to normal or average." [PATOC:GVG] +is_a: PATO:0001236 ! process quality +is_a: PATO:0002300 ! increased quality +property_value: RO:0002604 PATO:0002302 +created_by: George Gkoutos +creation_date: 2011-06-16T06:53:08Z + +[Term] +id: PATO:0002305 +name: increased object quality +def: "A quality of an object that has a value that is increased compared to normal or average." [PATOC:GVG] +is_a: PATO:0001241 ! physical object quality +is_a: PATO:0002300 ! increased quality +property_value: RO:0002604 PATO:0002303 +created_by: George Gkoutos +creation_date: 2011-06-16T06:54:01Z + +[Term] +id: PATO:0002306 +name: equilateral triangular +def: "A triangular quality inhering in a bearer by virtue of the bearer's having all sides of the same length." [PATOC:JB] +subset: value_slim +is_a: PATO:0001875 ! triangular +disjoint_from: PATO:0002307 ! isosceles triangular +disjoint_from: PATO:0002308 ! scalene triangular +created_by: George Gkoutos +creation_date: 2011-06-27T11:22:50Z + +[Term] +id: PATO:0002307 +name: isosceles triangular +def: "A triangular quality inhering in a bearer by virtue of the bearer's having two sides have the same length." [PATOC:JB] +subset: scalar_slim +is_a: PATO:0001875 ! triangular +disjoint_from: PATO:0002308 ! scalene triangular +created_by: George Gkoutos +creation_date: 2011-06-27T11:23:52Z + +[Term] +id: PATO:0002308 +name: scalene triangular +def: "A triangular quality inhering in a bearer by virtue of the bearer's having all sides of unequal length." [PATOC:JB] +subset: value_slim +is_a: PATO:0001875 ! triangular +created_by: George Gkoutos +creation_date: 2011-06-27T11:24:24Z + +[Term] +id: PATO:0002309 +name: fiber shaped +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a by virtue of the bearer's exhibiting a consistently sized and approximately round cross-section along its length, which is many times larger than its diameter." [PATOC:DC] +comment: Note that a fiber shaped object may take any circuitous or straight path through space (think of a length of string or rope). +subset: value_slim +is_a: PATO:0002226 ! subcylindrical +created_by: George Gkoutos +creation_date: 2011-09-09T04:50:10Z + +[Term] +id: PATO:0002310 +name: robust +def: "A quality inhering in a bearer by virtue of the bearer's being strong, thick or sturdy." [PATOC:BF] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2011-09-20T06:23:31Z + +[Term] +id: PATO:0002311 +name: fimbriated +def: "Having a fringe or border of hairlike or fingerlike projections." [PATO:WS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2011-09-22T03:52:11Z + +[Term] +id: PATO:0002312 +name: segmented +def: "Consisting of segments or similar parts arranged in a longitudinal series." [OED:] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: George Gkoutos +creation_date: 2011-10-03T03:42:23Z + +[Term] +id: PATO:0002313 +name: telescopic +def: "Having or resembling the shape of a telescope." [PATOC:BF] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2011-10-03T03:49:26Z + +[Term] +id: PATO:0002314 +name: ligamentous +def: "Having the nature or characteristic of, a ligament; composed of the tissue proper to ligaments." [PATOC:BF] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: George Gkoutos +creation_date: 2011-10-03T03:57:39Z + +[Term] +id: PATO:0002315 +name: brush-like shape +def: "A shape quality inhering in a bearer by virtue of the bearer's resembling the end of a brush with a multitude of bristles." [PATOC:BF] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2011-10-03T03:59:59Z + +[Term] +id: PATO:0002316 +name: autogenous +def: "Being separate or discrete from other skeletal elements." [PATOC:WD] +subset: value_slim +synonym: "free" RELATED [] +is_a: PATO:0000141 ! structure +created_by: George Gkoutos +creation_date: 2011-10-03T04:17:08Z + +[Term] +id: PATO:0002317 +name: parallelogram +def: "A convex quadrilateral is a parallelogram if and only if any one of the following statements are true:\n1. Each diagonal divides the quadrilateral into two congruent triangles with the same orientation.\n2. The opposite sides are congruent in pairs.\n3. The diagonals bisect each other.\n4. The opposite angles are congruent in pairs.\n5. The sum of the squares of the sides equals the sum of the squares of the diagonals. (This is the parallelogram law)\n6.It possesses rotational symmetry.\n7.One pair of opposite sides are parallel and congruent.\n8.Two pairs of adjacent angles are supplementary." [wikipedia:Parallelogram] +subset: value_slim +is_a: PATO:0001988 ! quadrangular +created_by: George Gkoutos +creation_date: 2011-10-12T12:33:07Z + +[Term] +id: PATO:0002318 +name: superelliptic +def: "A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt" [wiktionary:superellipse] +synonym: "Lamé curve" EXACT [] +is_a: PATO:0002006 ! 2-D shape +created_by: George Gkoutos +creation_date: 2011-10-12T12:45:16Z + +[Term] +id: PATO:0002319 +name: squircle +def: "A shape with properties between those of a square and those of a circle." [wikipedia:Squircle] +subset: value_slim +is_a: PATO:0002318 ! superelliptic +created_by: George Gkoutos +creation_date: 2011-10-12T12:47:48Z + +[Term] +id: PATO:0002320 +name: diamond shaped +def: "A superelptic shape inhering in a bearer by virtue of the bearer's shape resembling a diamond." [PATO:WC] +subset: value_slim +is_a: PATO:0002318 ! superelliptic +created_by: George Gkoutos +creation_date: 2011-10-12T12:49:06Z + +[Term] +id: PATO:0002321 +name: hypoelliptic +is_a: PATO:0002318 ! superelliptic +property_value: RO:0002604 PATO:0002322 +created_by: George Gkoutos +creation_date: 2011-10-12T12:50:59Z + +[Term] +id: PATO:0002322 +name: hyperelliptic +is_a: PATO:0002318 ! superelliptic +property_value: RO:0002604 PATO:0002321 +created_by: George Gkoutos +creation_date: 2011-10-12T12:51:19Z + +[Term] +id: PATO:0002323 +name: temporal distribution quality +def: "A temporal distribution pattern of process occurrences within a regulation/reference process." [PATOC:LC] +subset: attribute_slim +is_a: PATO:0002062 ! physical quality of a process +created_by: George Gkoutos +creation_date: 2011-11-22T01:12:28Z + +[Term] +id: PATO:0002324 +name: offset quality +def: "The temporal relation between the end of the process with respect to a reference process." [PATOC:LC] +subset: attribute_slim +synonym: "completeness" RELATED [GOC:CJM] +synonym: "extent" RELATED [GOC:CJM] +is_a: PATO:0002323 ! temporal distribution quality +created_by: George Gkoutos +creation_date: 2011-11-23T11:46:00Z + +[Term] +id: PATO:0002325 +name: onset quality +def: "The temporal relation between the start of the process with respect to a reference process." [PATOC:LC] +subset: attribute_slim +synonym: "initiation" RELATED [] +is_a: PATO:0002323 ! temporal distribution quality +created_by: George Gkoutos +creation_date: 2011-11-23T11:47:34Z + +[Term] +id: PATO:0002326 +name: angle +def: "An orientation inhering in a bearer by virtue of the bearer's placement at an angle." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0000133 ! orientation +created_by: George Gkoutos +creation_date: 2011-11-23T12:06:09Z + +[Term] +id: PATO:0002327 +name: increased angle to +def: "An angle which is relatively high." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001475 ! increased position +is_a: PATO:0002326 ! angle +property_value: RO:0002604 PATO:0002328 +created_by: George Gkoutos +creation_date: 2011-11-23T12:06:38Z + +[Term] +id: PATO:0002328 +name: decreased angle to +def: "An angle which is relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001476 ! decreased position +is_a: PATO:0002326 ! angle +property_value: RO:0002604 PATO:0002327 +created_by: George Gkoutos +creation_date: 2011-11-23T12:06:54Z + +[Term] +id: PATO:0002329 +name: hyponastic +def: "A shape quality inhering in a bearer by virtue of the bearer's exhibiting a upward bending of its leaves or other plant parts." [PATOC:DS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-01-31T11:40:23Z + +[Term] +id: PATO:0002330 +name: oblanceolate +def: "A quality inhering in a bearer by virtue of the bearer's being extended along a straight line, and is shaped like a reversed lance-point, with the tapering point attached to the leafstalk." [PATOC:PG] +subset: value_slim +is_a: PATO:0001199 ! linear +created_by: gkoutos +creation_date: 2012-01-31T11:57:54Z + +[Term] +id: PATO:0002331 +name: adhesive +def: "A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact." [PATOC:GVG] +subset: value_slim +synonym: "resinous" RELATED [] +is_a: PATO:0001431 ! adhesivity +property_value: RO:0002604 PATO:0002332 +created_by: gkoutos +creation_date: 2012-01-31T12:28:16Z + +[Term] +id: PATO:0002332 +name: non-adhesive +def: "A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact." [PATOC:GVG] +subset: value_slim +synonym: "non-resinous" RELATED [] +is_a: PATO:0001431 ! adhesivity +property_value: RO:0002604 PATO:0002331 +created_by: gkoutos +creation_date: 2012-01-31T12:28:57Z + +[Term] +id: PATO:0002333 +name: increased adhesivity +def: "A adhesivity which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0002331 ! adhesive +property_value: RO:0002604 PATO:0002334 +created_by: gkoutos +creation_date: 2012-01-31T12:32:43Z + +[Term] +id: PATO:0002334 +name: decreased adhesivity +def: "A adhesivity which is relatively low." [PATOC:GVG] +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0002331 ! adhesive +property_value: RO:0002604 PATO:0002333 +created_by: gkoutos +creation_date: 2012-01-31T12:42:22Z + +[Term] +id: PATO:0002335 +name: tholiform +def: "A shape quality inhering in a bearer by virtue of the bearer's being dome-shaped." [PATOC:dd] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-01-31T02:32:14Z + +[Term] +id: PATO:0002336 +name: pyramidal +def: "A shape quality inhering in a bearer by virtue of the bearer's having triangular faces that meet at a common point and containing a polygonal shaped base." [PATOC:DD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-01-31T02:35:02Z + +[Term] +id: PATO:0002337 +name: lance-ovate +def: "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; characterized with an egg-shaped form crossed with a lance-head shaped form." [PATOC:DD] +subset: value_slim +is_a: PATO:0001877 ! lanceolate +created_by: gkoutos +creation_date: 2012-01-31T02:43:15Z + +[Term] +id: PATO:0002338 +name: lanceolate-triangular +def: "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle together forming three angles; attached at the broad end." [PATOC:DD] +subset: value_slim +is_a: PATO:0001877 ! lanceolate +created_by: gkoutos +creation_date: 2012-01-31T02:46:43Z + +[Term] +id: PATO:0002339 +name: hispid +def: "A quality of being covered with stiff or rough hairs." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000454 ! hairy +created_by: gkoutos +creation_date: 2012-01-31T02:51:37Z + +[Term] +id: PATO:0002340 +name: hispidulous +def: "A quality of being minutely hispid." [PATOC:DD] +subset: value_slim +is_a: PATO:0002339 ! hispid +created_by: gkoutos +creation_date: 2012-01-31T02:53:21Z + +[Term] +id: PATO:0002341 +name: tomentose +def: "A quality of being covered with short, dense, matted hairs." [thefreedictionary:www.thefreedictionary.com] +subset: value_slim +is_a: PATO:0000454 ! hairy +created_by: gkoutos +creation_date: 2012-01-31T02:55:56Z + +[Term] +id: PATO:0002342 +name: cupulate +def: "A quality inhering in a bearer by virtue of the bearer's being a cupule, with a structure similar to a cup that also encloses the ovule in partiality." [PATOC:DD] +subset: value_slim +is_a: PATO:0002227 ! cup-shaped +created_by: gkoutos +creation_date: 2012-01-31T02:59:07Z + +[Term] +id: PATO:0002343 +name: decumbent +def: "A positional quality inhering in a bearer by virtue of the bearer's lying or growing on the ground but with erect or rising tips." [thefreedictionary:www.thefreedictionary.com] +subset: value_slim +is_a: PATO:0000631 ! prostrate +created_by: gkoutos +creation_date: 2012-01-31T03:13:12Z + +[Term] +id: PATO:0002344 +name: arachnose +def: "A quality inhering in a bearer by virtue of the bearer's being characterized by fine, entangled hairs giving the appearance of cobweb." [PATOC:DD] +subset: value_slim +is_a: PATO:0000454 ! hairy +created_by: gkoutos +creation_date: 2012-01-31T03:49:00Z + +[Term] +id: PATO:0002345 +name: lemon-shaped +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc" [PATOC:MH] +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape +created_by: gkoutos +creation_date: 2012-01-31T03:55:16Z + +[Term] +id: PATO:0002346 +name: snowman-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two connected parts, roughly spherical, of different sizes." [PATOC:MH] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: gkoutos +creation_date: 2012-01-31T03:58:10Z + +[Term] +id: PATO:0002347 +name: obconical +def: "A conical quality inhering in a bearer by virtue of the bearer's resembling a cone, with the pointed end attached to an organism." [wiktionary:http\://en.wiktionary.org/wiki/obconical] +subset: value_slim +is_a: PATO:0002021 ! conical +created_by: gkoutos +creation_date: 2012-01-31T04:05:28Z + +[Term] +id: PATO:0002348 +name: ligneous +def: "A structural quality inhering in a bearer by virtue of the bearer resembling wood." [merriam-webster:http\://www.merriam-webster.com/dictionary/ligneous] +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2012-01-31T04:06:50Z + +[Term] +id: PATO:0002349 +name: basal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the base of an organism relative to another entity." [merriam-webster:http\://www.merriam-webster.com/dictionary/basal] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-01-31T04:12:25Z + +[Term] +id: PATO:0002350 +name: cauline to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the stalk of an organism relative to another entity." [merriam-webster:http\://www.merriam-webster.com/dictionary/cauline] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-01-31T04:13:06Z + +[Term] +id: PATO:0002351 +name: fleshy +def: "A structural quality inhering in a bearer by virtue of the bearer resembling or containing flesh." [wiktionary:http\://en.wiktionary.org/wiki/fleshy] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: gkoutos +creation_date: 2012-01-31T04:15:30Z + +[Term] +id: PATO:0002352 +name: herbaceous +def: "A quality inhering in a bearer by virtue of the bearer's upper parts die back to the rootstock at the end of the growing season." [PATOC:PG] +subset: scalar_slim +is_a: PATO:0001729 ! shedability +created_by: gkoutos +creation_date: 2012-01-31T04:29:36Z + +[Term] +id: PATO:0002353 +name: activation quality +def: "A quality that inheres in a bearer in virtue of its realizing one of its functions." [PATOC:RH] +subset: attribute_slim +is_a: PATO:0001509 ! functionality +created_by: gkoutos +creation_date: 2012-01-31T04:51:42Z + +[Term] +id: PATO:0002354 +name: active +def: "A quality of an physical object that is currently realizing one of its functions." [PATOC:RH] +subset: attribute_slim +is_a: PATO:0002353 ! activation quality +property_value: RO:0002604 PATO:0002355 +created_by: gkoutos +creation_date: 2012-01-31T04:52:04Z + +[Term] +id: PATO:0002355 +name: inactive +def: "A quality of a physical object that is currently realizing none of its functions." [PATOC:RH] +subset: attribute_slim +is_a: PATO:0002353 ! activation quality +property_value: RO:0002604 PATO:0002354 +created_by: gkoutos +creation_date: 2012-01-31T04:52:14Z + +[Term] +id: PATO:0002356 +name: constitutively active +def: "A quality of a physical object that has been constantly realizing some of its functions." [PATOC:RH] +subset: attribute_slim +is_a: PATO:0002354 ! active +created_by: gkoutos +creation_date: 2012-01-31T04:52:24Z + +[Term] +id: PATO:0002357 +name: D-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's having a strait side and an arched side giving the bearer the form of the letter D." [PATOC:AE] +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape +created_by: gkoutos +creation_date: 2012-02-21T11:46:51Z + +[Term] +id: PATO:0002358 +name: ridged +def: "An elongated raised margin or border." [PATOC:GVG] +subset: value_slim +synonym: "ridge-like" EXACT [] +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-02-21T12:27:39Z + +[Term] +id: PATO:0002359 +name: broad +def: "A quality inhering in a bearer by virtue of the bearer's width being notably higher than its length." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-03-13T06:04:00Z + +[Term] +id: PATO:0002360 +name: tendency +def: "A disposition that can be compared on a linear scale - that is that it can be increased or decreased." [PATOC:RH] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0001727 ! disposition +created_by: gkoutos +creation_date: 2012-03-16T06:31:50Z + +[Term] +id: PATO:0002361 +name: increased tendency +def: "A tendency which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0002360 ! tendency +property_value: RO:0002604 PATO:0002362 +created_by: gkoutos +creation_date: 2012-03-16T06:31:57Z + +[Term] +id: PATO:0002362 +name: decreased tendency +def: "A tendency which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0002360 ! tendency +property_value: RO:0002604 PATO:0002361 +created_by: gkoutos +creation_date: 2012-03-16T06:32:57Z + +[Term] +id: PATO:0002363 +name: bronze +def: "A medium brown color with a metallic sheen, resembles the actual alloy bronze." [PATO:LC] +subset: value_slim +is_a: PATO:0000952 ! brown +created_by: gkoutos +creation_date: 2012-05-03T11:08:18Z + +[Term] +id: PATO:0002364 +name: shortened +def: "A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000052 ! shape +property_value: RO:0002604 PATO:0001154 +created_by: gkoutos +creation_date: 2012-04-18T06:31:29Z + +[Term] +id: PATO:0002365 +name: intact female +def: "Female quality of having complete, unaltered reproductive organs" [PATOC:MF] +subset: value_slim +is_a: PATO:0000383 ! female +created_by: gkoutos +creation_date: 2012-05-03T11:18:41Z + +[Term] +id: PATO:0002366 +name: intact male +def: "Male quality of having complete, unaltered reproductive organs." [PATOC:MF] +subset: value_slim +is_a: PATO:0000384 ! male +created_by: gkoutos +creation_date: 2012-05-03T11:19:06Z + +[Term] +id: PATO:0002367 +name: castrated male +def: "Male quality of being incapable to reproduce because of functional loss of the testicles from surgical removal or chemical means." [PATOC:MF] +subset: value_slim +is_a: PATO:0000384 ! male +created_by: gkoutos +creation_date: 2012-05-03T11:22:29Z + +[Term] +id: PATO:0002368 +name: nulliparous +def: "A viviparous organism having never given birth." [PATOC:mf] +subset: value_slim +is_a: PATO:0002370 ! parity +created_by: gkoutos +creation_date: 2012-05-03T11:25:25Z + +[Term] +id: PATO:0002369 +name: multiparous +def: "A viviparous organism that has given birth two or more times." [wiki:http\://en.wikipedia.org/wiki/Parity_(biology)] +subset: value_slim +is_a: PATO:0002370 ! parity +created_by: gkoutos +creation_date: 2012-05-03T11:26:34Z + +[Term] +id: PATO:0002370 +name: parity +def: "The number of time that a viviparous organism has given birth." [wiki:http\://en.wikipedia.org/wiki/Parity_(biology)] +subset: attribute_slim +is_a: PATO:0001434 ! reproductive quality +created_by: gkoutos +creation_date: 2012-05-03T11:27:56Z + +[Term] +id: PATO:0002371 +name: primiparous +def: "A viviparous organism having given birth one time." [wiki:http\://en.wikipedia.org/wiki/Parity_(biology)] +subset: value_slim +is_a: PATO:0002370 ! parity +created_by: gkoutos +creation_date: 2012-05-03T11:29:38Z + +[Term] +id: PATO:0002372 +name: grand multi[arous +def: "A viviparous organism that has given birth five or more times." [wiki:http\://en.wikipedia.org/wiki/Parity_(biology)] +subset: value_slim +is_a: PATO:0002369 ! multiparous +created_by: gkoutos +creation_date: 2012-05-03T11:30:28Z + +[Term] +id: PATO:0002373 +name: mediolateral polarity +def: "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the mediolateral axis." [PATOC:DS] +subset: value_slim +is_a: PATO:0001769 ! positional polarity +created_by: gkoutos +creation_date: 2012-07-05T01:49:04Z + +[Term] +id: PATO:0002374 +name: fluctuating +def: "Recurrent and often more or less cyclic alteration." [PATOC:DS] +subset: value_slim +is_a: PATO:0001227 ! variant +created_by: gkoutos +creation_date: 2012-07-05T01:52:36Z + +[Term] +id: PATO:0002375 +name: trumpet-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a trumpet." [PATOC:DS] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: gkoutos +creation_date: 2012-07-05T02:45:17Z + +[Term] +id: PATO:0002376 +name: inflated +def: "A structure quality inhering in a bearer by virtue of the bearer's being filled with air." [PATOC:CVS] +subset: value_slim +synonym: "air-filled" EXACT [] +is_a: PATO:0002014 ! structure, cavities +property_value: RO:0002604 PATO:0002377 +created_by: gkoutos +creation_date: 2012-07-05T02:55:10Z + +[Term] +id: PATO:0002377 +name: uninflated +def: "A structure quality inhering in a bearer by virtue of the bearer's being not filed with air." [PATOC:CVS] +subset: value_slim +is_a: PATO:0002014 ! structure, cavities +property_value: RO:0002604 PATO:0002376 +created_by: gkoutos +creation_date: 2012-07-05T02:56:07Z + +[Term] +id: PATO:0002378 +name: acinus +def: "Having a shape that resembles a many-lobed \"berry,\" such as a raspberry." [wikipedia:https\://en.wikipedia.org/wiki/Acinus] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001979 ! lobed +created_by: gkoutos +creation_date: 2012-07-05T02:58:05Z + +[Term] +id: PATO:0002379 +name: ovariohysterectomized female +def: "A female fertility quality inhering in a female by virtue of the bearer's not being capable of reproducing because of surgical removal of ovaries and uterus." [PATOC:MF] +subset: value_slim +is_a: PATO:0000892 ! female sterile +created_by: gkoutos +creation_date: 2012-07-05T03:04:28Z + +[Term] +id: PATO:0002380 +name: ovariectomized female +def: "A female fertility quality inhering in a female by virtue of the bearer's not being capable of reproducing because of surgical removal of ovaries." [PATOC:MF] +subset: value_slim +is_a: PATO:0000892 ! female sterile +created_by: gkoutos +creation_date: 2012-07-05T03:06:12Z + +[Term] +id: PATO:0002381 +name: waxiness +def: "A composition quality inhering in an bearer by virtue of the presence of long chain aliphatic lipids on the surface of an organism." [PATOC:lm] +subset: attribute_slim +is_a: PATO:0000025 ! composition +created_by: gkoutos +creation_date: 2012-07-05T03:17:00Z + +[Term] +id: PATO:0002382 +name: increased waxiness +def: "A waxiness which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0002381 ! waxiness +property_value: RO:0002604 PATO:0002383 +created_by: gkoutos +creation_date: 2012-07-05T03:18:03Z + +[Term] +id: PATO:0002383 +name: decreased waxiness +def: "A waxiness which is relatively low." [] +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0002381 ! waxiness +property_value: RO:0002604 PATO:0002382 +created_by: gkoutos +creation_date: 2012-07-05T03:18:14Z + +[Term] +id: PATO:0002384 +name: waxy +def: "Presence of long chain aliphatic lipids on the surface of an organism." [PATOC:lm] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002381 ! waxiness +created_by: gkoutos +creation_date: 2012-07-05T03:18:21Z + +[Term] +id: PATO:0002385 +name: striate-angular +def: "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines, usually parallel, with at least one salient angle on the margin" [FNA:FNA] +subset: value_slim +is_a: PATO:0001410 ! striated +created_by: gkoutos +creation_date: 2012-07-05T05:17:07Z + +[Term] +id: PATO:0002386 +name: anvil +def: "A concave 3-D shape that inheres in the bearer by virtue of the bearer's shape that is wider at one end and narrow in the middle." [PATOC:AD] +synonym: "anvil shaped" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape +created_by: gkoutos +creation_date: 2012-07-23T03:13:41Z + +[Term] +id: PATO:0002387 +name: peracute +def: "Extremely acute and aggressive onset of a pathological process." [PATOC:PNS] +subset: mpath_slim +subset: value_slim +synonym: "per-acute" EXACT [] +is_a: PATO:0000389 ! acute +created_by: gkoutos +creation_date: 2012-09-15T02:57:46Z + +[Term] +id: PATO:0002388 +name: pedunculate +def: "Being supported by a peduncle or stalk." [PATOC:GV] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2012-10-12T01:10:41Z + +[Term] +id: PATO:0002389 +name: procumbent +def: "Growing horizontal to the ground without setting roots." [PATO:PG] +subset: value_slim +is_a: PATO:0000631 ! prostrate +created_by: gkoutos +creation_date: 2012-10-12T01:33:50Z + +[Term] +id: PATO:0002390 +name: radius +def: "A length quality which is equal to the length of any straight line segment that passes from the center of a circle to any endpoint on the circular boundary. The radius is half of the diameter." [PATO:DS] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000122 ! length +created_by: gkoutos +creation_date: 2012-11-15T05:17:15Z + +[Term] +id: PATO:0002391 +name: triradiate +def: "A shape quality inhering in a bearer by virtue of the bearer's having three rays or radiating branches." [merriam-webster:merriam-webster] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-11-15T05:19:32Z + +[Term] +id: PATO:0002392 +name: diagonal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located on a sloping line joining two nonconsecutive points of an entity relative to another entity." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-11-15T05:21:51Z + +[Term] +id: PATO:0002393 +name: increased tolerance to +def: "A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus." [PATOC:LC] +subset: relational_slim +subset: value_slim +is_a: PATO:0000515 ! tolerant to +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0002394 +created_by: gkoutos +creation_date: 2012-11-15T05:32:07Z + +[Term] +id: PATO:0002394 +name: decreased tolerance to +def: "A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus." [PATOC:LC] +subset: relational_slim +subset: value_slim +is_a: PATO:0000515 ! tolerant to +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0002393 +created_by: gkoutos +creation_date: 2012-11-15T05:33:05Z + +[Term] +id: PATO:0002395 +name: mislocalized abaxially +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned away from the axis of an organism." [PATOC:EH] +subset: value_slim +is_a: PATO:0000628 ! mislocalised +created_by: gkoutos +creation_date: 2012-11-20T04:13:32Z + +[Term] +id: PATO:0002396 +name: mislocalized adaxially +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the axis of an organism." [PATOC:EH] +subset: value_slim +is_a: PATO:0000628 ! mislocalised +created_by: gkoutos +creation_date: 2012-11-20T04:15:12Z + +[Term] +id: PATO:0002397 +name: subcircular +def: "A circular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, circular." [PATOC:AD] +subset: value_slim +synonym: "round" RELATED [] +synonym: "rounded" RELATED [] +is_a: PATO:0002006 ! 2-D shape +created_by: gkoutos +creation_date: 2012-12-07T05:32:18Z + +[Term] +id: PATO:0002398 +name: obsolete +is_obsolete: true +created_by: gkoutos +creation_date: 2012-12-07T05:34:16Z + +[Term] +id: PATO:0002399 +name: anteromedially rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the front and the middle of an organism." [PATOC:JI] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001599 ! rotated +created_by: gkoutos +creation_date: 2012-12-07T05:41:01Z + +[Term] +id: PATO:0002400 +name: fusiform +def: "Having a spindle-like shape that is wide in the middle and tapers at both ends." [wikipedia:wikipedia] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001409 ! spindle-shaped +created_by: gkoutos +creation_date: 2012-12-07T05:43:25Z + +[Term] +id: PATO:0002401 +name: random pattern +def: "characterised by an unidentifiable pattern." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +created_by: gkoutos +creation_date: 2012-12-17T10:37:55Z + +[Term] +id: PATO:0002402 +name: multifocal to coalescing +def: "Multiple lesions some interconnecting with each other." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001791 ! multi-localised +created_by: gkoutos +creation_date: 2012-12-17T10:40:18Z + +[Term] +id: PATO:0002403 +name: generalized +def: "Affecting all regions without specificity of distribution." [PATOC:MPTH] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +synonym: "generalised" EXACT [] +is_a: PATO:0000060 ! spatial pattern +created_by: gkoutos +creation_date: 2012-12-17T10:41:37Z + +[Term] +id: PATO:0002404 +name: segmental +def: "Affecting a segment or segments." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +created_by: gkoutos +creation_date: 2012-12-17T10:43:13Z + +[Term] +id: PATO:0002405 +name: friability +def: "A structural quality inhering in a bearer by virtue of the bearer's disposition to be reduced to smaller pieces with little effort." [Wikipedia:https\://en.wikipedia.org/wiki/Friability] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2012-12-17T10:47:16Z + +[Term] +id: PATO:0002406 +name: friable +def: "Easily reduced to powder or easily fragmentable or crumbly." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002405 ! friability +created_by: gkoutos +creation_date: 2012-12-17T10:48:30Z + +[Term] +id: PATO:0002407 +name: indurated +def: "Having become firm or hard especially by increase of fibrous elements." [mw:http\://www.merriam-webster.com/dictionary/indurated] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002405 ! friability +created_by: gkoutos +creation_date: 2012-12-17T10:49:11Z + +[Term] +id: PATO:0002408 +name: watery +def: "Having the consistency of water." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: gkoutos +creation_date: 2012-12-17T10:51:32Z + +[Term] +id: PATO:0002409 +name: fluid-filled +def: "Bounded structure filled with fluid." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002014 ! structure, cavities +created_by: gkoutos +creation_date: 2012-12-17T10:53:18Z + +[Term] +id: PATO:0002410 +name: beige +def: "A colour that is very pale yellowish brown." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002413 ! light yellow brown +created_by: gkoutos +creation_date: 2012-12-17T10:54:55Z + +[Term] +id: PATO:0002411 +name: yellow brown +def: "A color consisting of yellow and brown hue." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000952 ! brown +created_by: gkoutos +creation_date: 2012-12-17T10:55:51Z + +[Term] +id: PATO:0002412 +name: dark yellow brown +def: "A color consisting of yellow and brown hue and low brightness." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002411 ! yellow brown +created_by: gkoutos +creation_date: 2012-12-17T10:56:22Z + +[Term] +id: PATO:0002413 +name: light yellow brown +def: "A color consisting of yellow and brown hue and high brightness." [PATOC:GVG] +is_a: PATO:0002411 ! yellow brown +created_by: gkoutos +creation_date: 2012-12-17T10:57:27Z + +[Term] +id: PATO:0002414 +name: chronic-active +def: "A quality of duration having progressive course of indefinite duration with active, acute-like elements." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001863 ! chronic +created_by: gkoutos +creation_date: 2012-12-17T10:59:58Z + +[Term] +id: PATO:0002415 +name: focally extensive +def: "Single lesion with expansion into surrounding tissue." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000627 ! localized +created_by: gkoutos +creation_date: 2012-12-17T11:01:31Z + +[Term] +id: PATO:0002416 +name: sunken +def: "Flattened from above downward; below the normal level or the level of the surrounding parts." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001687 ! elevation +created_by: gkoutos +creation_date: 2012-12-17T12:06:55Z + +[Term] +id: PATO:0002417 +name: transmural +def: "Extending through or affecting the entire thickness of the wall of an organ or cavity or boundary." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-12-17T02:16:18Z + +[Term] +id: PATO:0002418 +name: acidophilic +def: "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for acidic dyes under specific ph conditions." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +created_by: gkoutos +creation_date: 2012-12-17T03:01:19Z + +[Term] +id: PATO:0002419 +name: eosinophilic +def: "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for eosin dye." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +created_by: gkoutos +creation_date: 2012-12-17T03:02:09Z + +[Term] +id: PATO:0002420 +name: amphiphilic +def: "Having both hydrophilic and hydrophobic (or lipophilic) groups." [wikipedia:http\://en.wiktionary.org/wiki/amphiphilic] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +created_by: gkoutos +creation_date: 2012-12-17T03:04:39Z + +[Term] +id: PATO:0002421 +name: cicatricial +def: "Having or resembling the characteristic of a cicatrix - a scar resulting from formation and contraction of fibrous tissue." [mw:http\://www.merriam-webster.com/dictionary/cicatricial] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-12-17T03:08:09Z + +[Term] +id: PATO:0002422 +name: acinar +def: "Pertaining to the individual parts making up an aggregate fruit like a many-lobed \"berry,\" such as a raspberry." [wikipedia:https\://en.wikipedia.org/wiki/Acinus] +comment: Acinus is Latin for berry. +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2012-12-17T03:11:10Z + +[Term] +id: PATO:0002423 +name: papillomatous +def: "A round or lobulated protruding form resembling a nipple." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-12-17T03:13:44Z + +[Term] +id: PATO:0002424 +name: divergent from +def: "A positional quality inhering in a bearer by virtue of the bearer's having two or more entities that extend from a common point in different directions." [PATOC:AD] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-12-20T11:43:47Z + +[Term] +id: PATO:0002425 +name: exposed +def: "Open to view or not covered by another entity." [PATOC:WD] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-12-20T11:47:16Z + +[Term] +id: PATO:0002426 +name: scaphoid +def: "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a boat." [wordnetweb:wordnetweb] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:12:03Z + +[Term] +id: PATO:0002427 +name: knobbled +def: "A surface feature shape having numerous very small circular rounded projections or protuberances." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape +created_by: gkoutos +creation_date: 2013-01-29T09:15:53Z + +[Term] +id: PATO:0002428 +name: tripodal +def: "A 3-D shape with three supports or legs." [PATOC:WC] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:18:44Z + +[Term] +id: PATO:0002429 +name: x-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter X." [PATOC:WC] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:19:53Z + +[Term] +id: PATO:0002430 +name: strap-shaped +def: "A shape quality in which the bearer is shaped like a narrow band; ligulate." [thefreedictionary:thefreedictionary] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:21:17Z + +[Term] +id: PATO:0002431 +name: waisted +def: "A shape quality in which the bearer possesses a gradual, yet distinct, thinning from a wide starting point." [PATOC:WC] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:24:46Z + +[Term] +id: PATO:0002432 +name: spade-shaped +def: "A shape that is in the form of a spade." [PATOC:WC] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:26:49Z + +[Term] +id: PATO:0002433 +name: sculpted surface +def: "A surface feature shape marked by large amounts of relief, often with multiple ridges and grooves in close association. Topographically complex." [PATOC:AD] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape +created_by: gkoutos +creation_date: 2013-01-29T09:27:55Z + +[Term] +id: PATO:0002434 +name: perpendicular to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity." [PATOC:WC] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-01-29T09:29:55Z + +[Term] +id: PATO:0002435 +name: abutting +def: "A positional quality inhering in a bearer by virtue of the bearer touching another entity along a border or with a projecting part." [merriam-webster:merriam-webster] +subset: relational_slim +subset: scalar_slim +subset: value_slim +synonym: "abut" EXACT [] +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-01-29T09:31:12Z + +[Term] +id: PATO:0002436 +name: offset +def: "A positional quality inhering in a bearer by virtue of the bearer's position being displaced from a reference point." [PATOC:AD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-01-29T09:32:22Z + +[Term] +id: PATO:0002437 +name: interlocked with +def: "A structural quality inhering in a bearer by virtue of the bearer's being locked together or interconnected to another entity." [merriam-webster:merriam-webster] +subset: relational_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-01-29T09:37:13Z + +[Term] +id: PATO:0002438 +name: subdermal +def: "A structural quality inhering in a bearer by virtue of the bearer's being located or placed beneath the skin." [thefreedictionary:thefreedictionary] +subset: value_slim +synonym: "subcutaneous" EXACT [] +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-01-29T09:41:50Z + +[Term] +id: PATO:0002439 +name: w-shaped +def: "An angular shape quality inhering in a bearer by virtue of the bearer's having two angles in its length giving the bearer the form of the letter W." [PATOC:WC] +subset: value_slim +is_a: PATO:0001977 ! angular +created_by: gkoutos +creation_date: 2013-01-29T09:45:54Z + +[Term] +id: PATO:0002440 +name: ornamentation +def: "A surface feature shape quality inhering in a bearer by virtue of the degree of the bearer's highly topographical with ridges, pits, rugosity or other surface structures." [PATOC:GVG] +subset: disposition_slim +is_a: PATO:0001925 ! surface feature shape +created_by: gkoutos +creation_date: 2013-01-29T10:57:42Z + +[Term] +id: PATO:0002441 +name: ornamented +def: "A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures." [PATOC:AD] +subset: value_slim +is_a: PATO:0002440 ! ornamentation +property_value: RO:0002604 PATO:0002442 +created_by: gkoutos +creation_date: 2013-01-29T10:59:42Z + +[Term] +id: PATO:0002442 +name: unornamented +def: "A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures." [PATOC:AD] +subset: value_slim +is_a: PATO:0002440 ! ornamentation +property_value: RO:0002604 PATO:0002441 +created_by: gkoutos +creation_date: 2013-01-29T11:00:20Z + +[Term] +id: PATO:0002443 +name: level with +def: "A positional quality inhering in a bearer by virtue of the bearer's being located at the same level as another entity." [PATOC:NI] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-01-29T11:01:46Z + +[Term] +id: PATO:0002444 +name: mineralized +def: "A composition quality inhering in a bearer by virtue of the bearer's being composed of or possessing inorganic material." [PATOC:WC] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: gkoutos +creation_date: 2013-01-29T11:03:49Z + +[Term] +id: PATO:0002445 +name: torsioned +def: "A shape quality inhering in a bearer by virtue of the bearer's being twisted or turned." [freedictionary:freedictionary] +comment: The word "torsion" has multiple different meanings in different context (e.g. the act of twisting or the morphology of the digestive tract in gastropods). This term refers purely to the resulting shape and is not to be used in the engineering and mechanics sense of torsion. \nNote: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', but it is different in that something that is kinked has sharp twists or turns. +synonym: "twisted" EXACT [] +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T11:05:26Z + +[Term] +id: PATO:0002446 +name: anchor-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an anchor." [PATOC:WC] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T11:07:17Z + +[Term] +id: PATO:0002447 +name: quadripartite +def: "A shape quality inhering in a bearer by virtue of the bearer being divided into four parts." [PATOC:WC] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: gkoutos +creation_date: 2013-01-29T11:08:28Z + +[Term] +id: PATO:0002448 +name: oriented towards +def: "A quality inhering in a bearer by virtue of the bearer's being aligned or positioned towards another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-02-16T02:57:06Z + +[Term] +id: PATO:0002449 +name: posteromedial to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and mid-line surface of an organism relative to another entity." [PATOC:WC] +subset: relational_slim +subset: value_slim +is_a: PATO:0001633 ! posterior to +created_by: gkoutos +creation_date: 2013-02-16T03:00:46Z + +[Term] +id: PATO:0002450 +name: firm +def: "A hardness quality of giving significant resistance to pressure." [PATOC:CM] +subset: value_slim +is_a: PATO:0000048 ! hardness +created_by: gkoutos +creation_date: 2013-02-26T02:02:38Z + +[Term] +id: PATO:0002451 +name: sexually dimorphic +def: "A quality inhering in a bearer by virtue of the bearer's exhibiting a phenotypic difference between males and females of the same species." [PATOC:WC] +subset: value_slim +is_a: PATO:0001995 ! organismal quality +created_by: gkoutos +creation_date: 2013-03-11T09:22:04Z + +[Term] +id: PATO:0002452 +name: decondensed +def: "A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed." [PATOC:JL] +subset: value_slim +is_a: PATO:0000141 ! structure +property_value: RO:0002604 PATO:0001485 +created_by: gkoutos +creation_date: 2013-04-08T08:43:31Z + +[Term] +id: PATO:0002453 +name: eroding +def: "A structural quality inhering in a bearer by virtue of the bearer bring gradually worn away." [PATOC:JL] +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-04-08T08:45:08Z + +[Term] +id: PATO:0002454 +name: carpel-like +def: "A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a carpel." [PATO:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:00:28Z + +[Term] +id: PATO:0002455 +name: corymb-like +def: "A quality inhering in a bearer by virtue of the bearer's architecture bearing resemblence to a corymb type of inflorescence." [PATOC:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:01:02Z + +[Term] +id: PATO:0002456 +name: inflorescence-like +def: "A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of an inflorescence." [PATOC:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:02:05Z + +[Term] +id: PATO:0002457 +name: leaf-like +def: "A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a leaf." [PATOC:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:02:58Z + +[Term] +id: PATO:0002458 +name: pin-like +def: "A quality inhering in a bearer by virtue of the bearer being thin and lacking outgrowths." [PATOC:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:03:56Z + +[Term] +id: PATO:0002459 +name: sepal-like +def: "A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a sepal," [PATOC:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:04:36Z + +[Term] +id: PATO:0002460 +name: shriveled +def: "A structural quality inhering in a bearer by virtue of the bearer being smaller and contracted, expecially due to loss of moisture." [PATOC:JL] +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-04-09T06:05:18Z + +[Term] +id: PATO:0002461 +name: wilty +def: "To bend or hang downwards due to loss of water" [] +subset: value_slim +is_a: PATO:0002165 ! drooping +created_by: gkoutos +creation_date: 2013-04-09T06:06:14Z + +[Term] +id: PATO:0002462 +name: collagenous +def: "A composition quality inhering in an bearer by virtue of the bearer's consisting of collagen." [PATOC:WD] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: gkoutos +creation_date: 2013-09-15T11:34:15Z + +[Term] +id: PATO:0002463 +name: extends to +def: "A positional quality inhering in a bearer by virtue of some aspect of the bearer extending to the position of another entity." [PATOC:WD] +subset: relational_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-09-15T11:41:00Z + +[Term] +id: PATO:0002464 +name: extends beyond +def: "A positional quality inhering in a bearer by virtue of some aspect of the bearer extending past the position of another entity." [PATOC:WD] +subset: relational_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-09-15T11:42:15Z + +[Term] +id: PATO:0002465 +name: prism shaped +def: "A quality inhering in a bearer by virtue of the bearer's resembling a prism." [] +subset: value_slim +synonym: "tent shaped" RELATED [] +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-09-15T11:44:03Z + +[Term] +id: PATO:0002466 +name: keyhole shaped +def: "A shape quality inhering in a bearer by virtue of the bearer resembling a keyhole." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-09-15T11:45:53Z + +[Term] +id: PATO:0002467 +name: lathlike +def: "A shape quality inhering in a bearer by virtue of the bearer resembling a thin narrow strip." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-09-15T11:47:11Z + +[Term] +id: PATO:0002468 +name: distensible +def: "A structure quality inhering in a bearer by virtue of the bearer's being capable of swelling or stretching." [PATOC:WD] +subset: value_slim +is_a: PATO:0015008 ! distensibility +created_by: gkoutos +creation_date: 2013-09-15T11:48:26Z + +[Term] +id: PATO:0002469 +name: sutured to +def: "Structural quality inhereing in a bearer in which a joint has apposed bony surfaces united by fibrous tissue, permitting no movement; found only between bones." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-09-15T11:55:50Z + +[Term] +id: PATO:0002470 +name: transformed to +def: "A morphological quality between two bearers inhering that one bearer is subject to change the nature, function, or condition of itself to become the other." [PATOC:LC] +subset: relational_slim +subset: value_slim +is_a: PATO:0000051 ! morphology +created_by: gkoutos +creation_date: 2013-09-15T12:01:57Z + +[Term] +id: PATO:0002471 +name: increased velocity +def: "A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position." [PATOC:NV] +subset: value_slim +is_a: PATO:0002242 ! velocity +is_a: PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0002472 +created_by: gkoutos +creation_date: 2013-09-15T12:03:45Z + +[Term] +id: PATO:0002472 +name: decreased velocity +def: "A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position." [PATOC:NV] +subset: value_slim +is_a: PATO:0002242 ! velocity +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0002471 +created_by: gkoutos +creation_date: 2013-09-15T12:05:06Z + +[Term] +id: PATO:0002473 +name: neoplastic, spontaneous +def: "A disposition inhering in a tumour by virtue of the bearer's disposition to spontaneously arise." [PATOC:NV] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002011 ! neoplastic +created_by: gkoutos +creation_date: 2013-09-15T12:07:08Z + +[Term] +id: PATO:0002474 +name: bitter +def: "A flavor quality inhering in a bearer by virtue of the bearer's having an acrid, sharp, or disagreeable flavor." [PATOC:LC] +subset: value_slim +is_a: PATO:0001329 ! flavourful +created_by: gkoutos +creation_date: 2013-09-15T12:09:15Z + +[Term] +id: PATO:0002475 +name: subterminal +def: "A position quality inhering in a bearer by virtue of the bearer's existing near the end of another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-09-15T12:17:41Z + +[Term] +id: PATO:0002476 +name: terminal +def: "A position quality inhering in a bearer by virtue of the bearer's forming the end of another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-09-15T12:18:08Z + +[Term] +id: PATO:0002477 +name: brittle +def: "A structural quality inhering in a bearer by virtue of the bearer's disposition to breaks without significant deformation (strain) when subjected to stress." [wikipedia:http\://en.wikipedia.org/wiki/Brittleness] +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-09-15T12:25:03Z + +[Term] +id: PATO:0002478 +name: transversely striated +def: "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented transversely relative to the long axis of the bearer." [PATOC:DS] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001410 ! striated +created_by: gkoutos +creation_date: 2013-09-15T12:29:15Z + +[Term] +id: PATO:0002479 +name: obliquely striated +def: "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented obliquely relative to the long axis of the bearer." [PATOC:DS] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001410 ! striated +created_by: gkoutos +creation_date: 2013-09-15T12:29:42Z + +[Term] +id: PATO:0002480 +name: poorly ossified +def: "A quality inhering in an bearer by virtue of the bearer's possessing only minor levels of ossification." [PATOC:AD] +subset: value_slim +is_a: PATO:0001448 ! ossified +created_by: gkoutos +creation_date: 2013-09-30T05:47:07Z + +[Term] +id: PATO:0002481 +name: oblique orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a slanting direction or position : neither perpendicular nor parallel." [merriam-wester:http\://www.merriam-webster.com/dictionary/oblique] +subset: value_slim +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-09-30T05:49:50Z + +[Term] +id: PATO:0002482 +name: slit-like +def: "Shape quality inhering in a bearer by virtue of the bearer exhibiting a narrow and elongate opening." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-09-30T05:51:39Z + +[Term] +id: PATO:0002483 +name: external to +def: "Positional quality in which an entity is located outside of another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-09-30T06:06:27Z + +[Term] +id: PATO:0002484 +name: inverted-V shaped +def: "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of an inverted letter V." [PATOC:WD] +subset: value_slim +synonym: "chevron shaped" BROAD [] +is_a: PATO:0001977 ! angular +created_by: gkoutos +creation_date: 2013-10-10T03:55:44Z + +[Term] +id: PATO:0002485 +name: parallel-sided +def: "A shape quality inhering in a bearer by virtue of the bearer's possessing two sides that are at the same continuous distance relative to each other." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-10-10T03:58:37Z + +[Term] +id: PATO:0002486 +name: multi-organismal process quality +def: "A quality inhering in a process by virtue of that process having two or more organisms as participants." [PATOC:DS] +subset: attribute_slim +is_a: PATO:0001236 ! process quality +created_by: gkoutos +creation_date: 2013-10-10T04:08:44Z + +[Term] +id: PATO:0002487 +name: single organismal process quality +def: "A quality inhering in a process by virtue of that process having exactly one organism as a participant." [PATOC:DS] +subset: attribute_slim +is_a: PATO:0001236 ! process quality +created_by: gkoutos +creation_date: 2013-10-10T04:09:51Z + +[Term] +id: PATO:0002488 +name: overlapping +def: "Overlap with quality inhering in a bearer by virtue of the bearer's being positioned over another entity so as to cover some portion of it." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0001590 ! overlap with +created_by: gkoutos +creation_date: 2013-10-10T04:12:22Z + +[Term] +id: PATO:0002489 +name: overlapped by +def: "Overlap with quality inhering in a bearer by virtue of the bearer's being positioned under another entity so as to be covered by some portion of it." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0001590 ! overlap with +created_by: gkoutos +creation_date: 2013-10-10T04:13:04Z + +[Term] +id: PATO:0002490 +name: anterior orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteriorly." [PATOC:WD] +subset: value_slim +synonym: "anteriorly directly" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:11:26Z + +[Term] +id: PATO:0002491 +name: anterodorsal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally." [PATOC:WD] +subset: value_slim +synonym: "anterodorsally directed" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: RO:0002604 PATO:0002526 +created_by: gkoutos +creation_date: 2013-10-10T05:12:15Z + +[Term] +id: PATO:0002492 +name: anterolateral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterolaterally." [PATOC:WD] +subset: value_slim +synonym: "anterolaterally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:13:17Z + +[Term] +id: PATO:0002493 +name: anteroventral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteroventrally." [PATOC:WD] +subset: value_slim +synonym: "anteroventrally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:13:55Z + +[Term] +id: PATO:0002494 +name: distal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distally." [PATOC:WD] +subset: value_slim +synonym: "distally directed" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: RO:0002604 PATO:0002495 +created_by: gkoutos +creation_date: 2013-10-10T05:14:37Z + +[Term] +id: PATO:0002495 +name: dorsal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally." [PATOC:WD] +subset: value_slim +synonym: "dorsally directed" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: RO:0002604 PATO:0002494 +created_by: gkoutos +creation_date: 2013-10-10T05:15:24Z + +[Term] +id: PATO:0002496 +name: dorsolateral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsolaterally." [PATOC:WD] +subset: value_slim +synonym: "dorsolaterally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:16:04Z + +[Term] +id: PATO:0002497 +name: lateral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed laterally." [PATOC:WD] +subset: value_slim +synonym: "laterally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:16:45Z + +[Term] +id: PATO:0002498 +name: medial orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed medially." [PATOC:WD] +subset: value_slim +synonym: "medially directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:17:30Z + +[Term] +id: PATO:0002499 +name: posterior orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteriorly." [PATOC:WD] +subset: value_slim +synonym: "posteriorly directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:18:21Z + +[Term] +id: PATO:0002500 +name: ventrolaterally orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrolaterally." [PATOC:WD] +subset: value_slim +synonym: "ventrolaterally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:19:16Z + +[Term] +id: PATO:0002501 +name: ventral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrally." [PATOC:WD] +subset: value_slim +synonym: "ventrally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:19:22Z + +[Term] +id: PATO:0002502 +name: transverse orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed transversely." [PATOC:WD] +subset: value_slim +synonym: "transversely oriented" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:19:25Z + +[Term] +id: PATO:0002503 +name: posterolateral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterolaterally." [PATOC:WD] +subset: value_slim +synonym: "posterolaterally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:19:28Z + +[Term] +id: PATO:0002504 +name: posterodorsal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally." [PATOC:WD] +subset: value_slim +synonym: "posterodorsally directed" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: RO:0002604 PATO:0002527 +created_by: gkoutos +creation_date: 2013-10-10T05:19:36Z + +[Term] +id: PATO:0002505 +name: nucleated +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001404 ! nucleate quality +created_by: gkoutos +creation_date: 2013-10-21T05:44:34Z + +[Term] +id: PATO:0002506 +name: alobate +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's not having undulating edges forming lobes." [PATOC:DOS] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape +created_by: gkoutos +creation_date: 2013-10-25T04:42:40Z + +[Term] +id: PATO:0002507 +name: keratinous +def: "A composition quality inhering in a bearer by virtue of the bearer's consisting of keratin." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: segerdel +creation_date: 2014-02-04T12:38:14Z + +[Term] +id: PATO:0002508 +name: concealed +def: "A positional quality inhering in a bearer by virtue of the bearer being hidden from view." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-04T01:30:21Z + +[Term] +id: PATO:0002509 +name: hexagonal +def: "A 2-D shape quality inhering in a bearer by virtue of the bearer's having six angles and six sides." [Merriam-Webster:hexagonal] +subset: value_slim +is_a: PATO:0002006 ! 2-D shape +created_by: segerdel +creation_date: 2014-02-04T01:50:05Z + +[Term] +id: PATO:0002510 +name: multipartite +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer being divided into multiple parts." [PATOC:EJS] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: segerdel +creation_date: 2014-02-06T01:15:28Z + +[Term] +id: PATO:0002511 +name: cane-like +def: "A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a cane." [PATOC:EJS] +subset: value_slim +synonym: "cane-shaped" RELATED [] +is_a: PATO:0000052 ! shape +created_by: segerdel +creation_date: 2014-02-06T02:04:35Z + +[Term] +id: PATO:0002512 +name: confluent with +def: "A positional quality inhering in a bearer by virtue of the bearer flowing or coming together with another entity." [Merriam-Webster:confluent] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-06T02:28:39Z + +[Term] +id: PATO:0002513 +name: oblique to +def: "A positional quality inhering in a bearer by virtue of the bearer's having a slanting direction (neither perpendicular nor parallel) relative to another entity." [PATOC:EJS] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-06T02:54:16Z + +[Term] +id: PATO:0002514 +name: anteromedial orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteromedially." [PATOC:EJS] +subset: value_slim +synonym: "medioanterior orientation" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: segerdel +creation_date: 2014-02-07T12:59:10Z + +[Term] +id: PATO:0002515 +name: increased elevation relative to +def: "An elevation quality inhering in a bearer by virtue the bearer's being in a high position relative to another entity." [PATOC:EJS] +subset: relational_slim +subset: value_slim +is_a: PATO:0001687 ! elevation +created_by: segerdel +creation_date: 2014-02-07T01:12:48Z + +[Term] +id: PATO:0002516 +name: concealed by +def: "A positional quality inhering in a bearer by virtue of the bearer being hidden from view or covered by another entity." [PATOC:EJS] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-10T01:13:53Z + +[Term] +id: PATO:0002517 +name: saddle-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a saddle." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: segerdel +creation_date: 2014-02-10T01:23:13Z + +[Term] +id: PATO:0002518 +name: flush +def: "A positional quality inhering in a bearer by virtue of the bearer being level or even with another surface." [WordReference:flush] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-10T01:26:50Z + +[Term] +id: PATO:0002519 +name: cancellous +def: "A structural quality inhering in a bearer by virtue of the bearer's having an open, latticed, or porous structure; used especially of bone." [TheFreeDictionary:cancellous] +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: segerdel +creation_date: 2014-02-10T01:33:14Z + +[Term] +id: PATO:0002520 +name: scute-like +def: "A shape quality inhering in a bearer by virtue of the bearer being shaped like a scute or an osteoderm." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: segerdel +creation_date: 2014-02-10T01:37:47Z + +[Term] +id: PATO:0002521 +name: funnel-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a funnel." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: segerdel +creation_date: 2014-02-10T01:40:05Z + +[Term] +id: PATO:0002522 +name: keel-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer having an elongate structure, similar to a ridge, that extends longitudinally along an anatomical entity." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: segerdel +creation_date: 2014-02-10T01:46:38Z + +[Term] +id: PATO:0002523 +name: vertical to +def: "A positional quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity and to the horizon." [PATOC:EJS] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-10T02:25:42Z + +[Term] +id: PATO:0002524 +name: mesiolateral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed mesiolaterally." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000133 ! orientation +created_by: segerdel +creation_date: 2014-02-10T02:37:42Z + +[Term] +id: PATO:0002525 +name: separating +def: "A structural quality inhering in a bearer by virtue of the bearer being in a position that produces a separation in, or acting to separate, another entity." [PATOC:EJS] +subset: relational_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: segerdel +creation_date: 2014-02-10T02:48:15Z + +[Term] +id: PATO:0002526 +name: anterodistal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally." [PATOC:EJS] +synonym: "antero-distal orientation" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: RO:0002604 PATO:0002491 +created_by: segerdel +creation_date: 2014-03-11T11:28:39Z + +[Term] +id: PATO:0002527 +name: posterodistal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally." [PATOC:EJS] +synonym: "postero-distal orientation" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: RO:0002604 PATO:0002504 +created_by: segerdel +creation_date: 2014-03-11T11:29:22Z + +[Term] +id: PATO:0002528 +name: obsolete borderline intensity +comment: obsoleted because the ID was accidentally reused +is_obsolete: true +replaced_by: PATO:0002628 + +[Term] +id: PATO:0002529 +name: obsolete profound intensity +comment: obsoleted because the ID was accidentally reused +is_obsolete: true +replaced_by: PATO:0002629 + +[Term] +id: PATO:0002530 +name: obsolete episodic +comment: obsoleted because the ID was accidentally reused +is_obsolete: true +replaced_by: PATO:0002630 + +[Term] +id: PATO:0002531 +name: obsolete refractory +comment: obsoleted because the ID was accidentally reused +is_obsolete: true +replaced_by: PATO:0002631 + +[Term] +id: PATO:0002532 +name: obsolete secondary +comment: obsoleted because the ID was accidentally reused +is_obsolete: true +replaced_by: PATO:0002632 + +[Term] +id: PATO:0002533 +name: bipartite +def: "A multipartite quality inhering in a bearer by virtue of the bearer being divided into two parts." [PATOC:WD] +subset: value_slim +is_a: PATO:0002510 ! multipartite +created_by: wasila.dahdul +creation_date: 2014-08-12T11:12:13Z + +[Term] +id: PATO:0002534 +name: plowshare shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a plowshare." [PATOC:WD] +subset: value_slim +synonym: "plow-share shaped" EXACT [] +xref: Image:http\://2.bp.blogspot.com/_TbkIC-eqFNM/S66IJ3omNWI/AAAAAAAAFSk/pzThLJPvYZw/s1600/ard-detail.gif +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-08-12T11:23:12Z + +[Term] +id: PATO:0002535 +name: peg-like +def: "A shape quality inhering in a bearer by virtue of the bearer's having a short and stout cylindrical shape." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-08-12T11:30:08Z + +[Term] +id: PATO:0002536 +name: boomerang shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a boomerang, with two arms connected at an angle." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-08-12T11:32:16Z + +[Term] +id: PATO:0002537 +name: subovoid +def: "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a shape not quite ovoid. approximately ovoid." [merriam-webster:http\://www.merriam-webster.com/dictionary/subovoid] +subset: value_slim +is_a: PATO:0001865 ! spheroid +created_by: wasila.dahdul +creation_date: 2014-08-12T11:51:38Z + +[Term] +id: PATO:0002538 +name: concavo-convex +def: "A shape quality that obtains by virtue of the bearer being concave on one side and convex on the other." [merriam-webster:http\://www.merriam-webster.com/dictionary/concavo-convex] +subset: value_slim +synonym: "concavoconvex" EXACT [] +is_a: PATO:0002005 ! concavity +created_by: wasila.dahdul +creation_date: 2014-08-12T11:56:13Z + +[Term] +id: PATO:0002539 +name: ring shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a ring (a circular shape enclosing a space)." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-08-12T12:01:56Z + +[Term] +id: PATO:0002540 +name: spur shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's possessing a small, spike-like shape." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-08-12T12:07:44Z + +[Term] +id: PATO:0002541 +name: homeostatic +def: "Pertaining to the ability or tendency of an organism or cell to maintain internal equilibrium by adjusting its physiological processes." [GO:0042592] +is_a: PATO:0001995 ! organismal quality +created_by: haendel +creation_date: 2014-12-01T16:07:28Z + +[Term] +id: PATO:0002628 +name: borderline intensity +def: "An intensity which is borderline in it its effect or force as compared to baseline or normal." [] +subset: hpo_slim +is_a: PATO:0000049 ! intensity +created_by: haendel +creation_date: 2014-05-26T06:42:21Z + +[Term] +id: PATO:0002629 +name: profound intensity +def: "An intensity which is characterized by being very severe." [PATO:MAH] +subset: hpo_slim +is_a: PATO:0000049 ! intensity +created_by: haendel +creation_date: 2014-05-26T06:44:11Z + +[Term] +id: PATO:0002630 +name: episodic +def: "An occurrence quality inhering in a bearer by virtue of the bearer's having a course that occurs occasionally." [PATO:MAH] +subset: hpo_slim +is_a: PATO:0000057 ! occurrence +created_by: haendel +creation_date: 2014-05-26T06:50:16Z + +[Term] +id: PATO:0002631 +name: refractory +def: "An occurrence of a process during which time there is an inability to change the course, extent, or repetition of the process." [PATO:MAH] +subset: hpo_slim +is_a: PATO:0000057 ! occurrence +created_by: haendel +creation_date: 2014-05-26T13:09:29Z + +[Term] +id: PATO:0002632 +name: secondary +def: "A quality in which the effect or outcome is not primary or the focus of the observation." [PATO:MAH] +subset: hpo_slim +is_a: PATO:0000068 ! qualitative +created_by: haendel +creation_date: 2014-05-26T13:17:45Z + +[Term] +id: PATO:0005000 +name: hemispheroid +def: "A 3-D shape that is half of a sphere." [PATOC:WD] +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:25:08Z + +[Term] +id: PATO:0005001 +name: variability of count +def: "A variability quality inhering in the bearer by virtue of the bearer having a variable number or count of an entity." [PATOC:WD] +subset: value_slim +synonym: "variable number" RELATED [] +is_a: PATO:0001303 ! variability +relationship: towards PATO:0000070 ! amount +created_by: wasila.dahdul +creation_date: 2014-09-09T12:27:33Z + +[Term] +id: PATO:0005002 +name: pear shaped +def: "Having the shape of a pear; tapering near the top and bulging toward the base or bottom. From thefreedictionary.com" [PATOC:WD] +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:30:02Z + +[Term] +id: PATO:0005003 +name: paddle shaped +def: "A quality inhering in a bearer by virtue of the bearer's resembling the form of a paddle." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:34:45Z + +[Term] +id: PATO:0005004 +name: subelliptical +def: "A shape that is almost an ellipse." [PATOC:WD] +subset: value_slim +is_a: PATO:0002318 ! superelliptic +created_by: wasila.dahdul +creation_date: 2014-09-09T12:36:15Z + +[Term] +id: PATO:0005005 +name: radiating +def: "Shape quality inhering in a bearer expanding outward, or having parts expanding outward, from a center point." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:37:27Z + +[Term] +id: PATO:0005006 +name: differentiated from +def: "A morphology quality inhering in a bearer by virtue of the bearer's being morphologically distinguishable from another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +synonym: "distinct from" EXACT [] +is_a: PATO:0000051 ! morphology +created_by: wasila.dahdul +creation_date: 2014-09-09T12:40:57Z + +[Term] +id: PATO:0005007 +name: hypsodont +def: "A 3-D shape inhering in a bearer by virtue of the bearer's having dentition characterized by high-crowned teeth and enamel which extends far past the gum line, which provides extra material for wear and tear." [DOI:10.1111/j.1469-185X.2011.00176.x] +comment: Need to include axiom: hypsodont inheres_in some ('tooth crown' and bearer_of 'increased \nheight'). +subset: value_slim +is_a: PATO:0002266 ! 3-D shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:58:01Z + +[Term] +id: PATO:0005008 +name: brachydont +def: "A 3-D shape inhering in a bearer by virtue of the bearer's having dentition characterized by low-crowned teeth. Human teeth are brachydont." [DOI:10.1111/j.1469-185X.2011.00176.x] +comment: Need to include axiom: brachydont inheres_in some ('tooth crown' and bearer_of 'decreased \nheight'). +subset: value_slim +is_a: PATO:0002266 ! 3-D shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:59:35Z + +[Term] +id: PATO:0005009 +name: molariform +def: "A 3-D shape inhering in a bearer by virtue of the bearer's having an entity in the form of a molar tooth." [PATOC:WD] +subset: value_slim +is_a: PATO:0002266 ! 3-D shape +created_by: wasila.dahdul +creation_date: 2014-09-09T13:03:00Z + +[Term] +id: PATO:0005010 +name: plumose +def: "A branched quality inhering in a bearer by virtue of the bearer's having many fine filaments or branches that give a feathery appearance: for example, resembling a feather." [www.oxforddictionaries.com:http\://www.oxforddictionaries.com/us/definition/american_english/plumose] +subset: value_slim +is_a: PATO:0000402 ! branched +created_by: wasila.dahdul +creation_date: 2014-09-25T15:03:17Z + +[Term] +id: PATO:0005011 +name: continuous with +def: "A positional quality inhering in a bearer by virtue of the bearer possessing an uninterrupted or unbroken connection or spatial distribution relative to the position of another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: wasila.dahdul +creation_date: 2014-09-25T15:07:34Z + +[Term] +id: PATO:0005012 +name: complete structure +def: "A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts." [PATOC:WD] +subset: value_slim +is_a: PATO:0000141 ! structure +property_value: RO:0002604 PATO:0005013 +created_by: wasila.dahdul +creation_date: 2014-09-25T15:11:47Z + +[Term] +id: PATO:0005013 +name: incomplete structure +def: "A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities." [PATOC:WD] +subset: value_slim +is_a: PATO:0000141 ! structure +property_value: RO:0002604 PATO:0005012 +created_by: wasila.dahdul +creation_date: 2014-09-25T15:12:35Z + +[Term] +id: PATO:0005014 +name: subspherical +def: "A spheroid shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, spherical." [PATOC:WD] +subset: value_slim +is_a: PATO:0001865 ! spheroid +created_by: wasila.dahdul +creation_date: 2014-09-25T15:16:25Z + +[Term] +id: PATO:0005015 +name: tapered size +def: "A size quality inhering in an entity or set of entities in which size increases or decreases along the extent of the entity or set." [PATOC:WD] +subset: value_slim +synonym: "gradient of size" EXACT [] +is_a: PATO:0000117 ! size +created_by: wasila.dahdul +creation_date: 2014-09-25T15:17:51Z + +[Term] +id: PATO:0005016 +name: surrounded by +def: "A positional quality inhering in a bearer by virtue of the bearer's being enclosed on all sides by another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +synonym: "enclosed by" EXACT [] +is_a: PATO:0000140 ! position +created_by: wasila.dahdul +creation_date: 2014-09-25T15:20:55Z + +[Term] +id: PATO:0005017 +name: labiolingually compressed +def: "A quality inhering in a bearer by virtue of the bearer's being compressed from the side facing the lips to the side facing the tongue." [PATOC:WD] +subset: value_slim +is_a: PATO:0002254 ! flattened +created_by: wasila.dahdul +creation_date: 2014-10-02T11:52:09Z + +[Term] +id: PATO:0005018 +name: mesiodistally compressed +def: "A quality inhering in a bearer by virtue of the bearer's being compressed from the side facing the midline of the jaw to the side opposite the midline." [PATOC:WD] +subset: value_slim +is_a: PATO:0002254 ! flattened +created_by: wasila.dahdul +creation_date: 2014-10-02T11:53:52Z + +[Term] +id: PATO:0005019 +name: curved lingually +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the tongue." [PATOC:WD] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: wasila.dahdul +creation_date: 2014-10-02T12:01:16Z + +[Term] +id: PATO:0005020 +name: irregularly shaped +def: "A shape quality inhering on a bearer by virtue of a bearer's shape lacking in pattern or uniformity; for example, it may have sides of different lengths, different curvatures, or unequal angles." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-10-03T10:23:17Z + +[Term] +id: PATO:0005021 +name: unicuspidate +def: "Cuspidate quality inhering in a bearer by virtue of the bearer's possessing a single cusp." [PATOC:WD] +subset: value_slim +is_a: PATO:0001973 ! cuspidate +created_by: wasila.dahdul +creation_date: 2014-10-17T14:14:04Z + +[Term] +id: PATO:0005022 +name: uniform diameter +def: "A diameter that remains constant throughout the extent of an entity." [PATOC:WD] +subset: value_slim +is_a: PATO:0001334 ! diameter +created_by: wasila.dahdul +creation_date: 2014-10-17T14:15:59Z + +[Term] +id: PATO:0005023 +name: parasagittal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is in the parasagittal plane." [PATOC:WD] +subset: value_slim +is_a: PATO:0000133 ! orientation +created_by: wasila.dahdul +creation_date: 2014-10-17T14:21:30Z + +[Term] +id: PATO:0005024 +name: longitudinal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed along the longitudinal or anterior-posterior axis." [PATOC:WD] +subset: value_slim +is_a: PATO:0000133 ! orientation +created_by: wasila.dahdul +creation_date: 2014-10-17T14:24:19Z + +[Term] +id: PATO:0010000 +name: maximally connected +def: "A structural quality inhering in the bearer by virtue of the bearer consisting of a single, maximally connected structure." [GOC:dos] +comment: What counts as maximally connected may be relative to some specification of granularity. +is_a: PATO:0000141 ! structure +created_by: davidos +creation_date: 2014-12-12T08:41:11Z + +[Term] +id: PATO:0010001 +name: disconnected +def: "A structural quality inhering in the bearer by virtue of the bearer consisting of multiple structures lacking any physical connection to each other." [GOC:dos] +is_a: PATO:0000141 ! structure +created_by: davidos +creation_date: 2014-12-12T08:43:17Z + +[Term] +id: PATO:0010002 +name: propagation velocity +def: "The velocity of spatial propagation of a process. Examples include the velocity of propagation of an action potential along an axon." [orcid:0000-0002-7073-9172] +is_a: PATO:0002062 ! physical quality of a process +created_by: dos +creation_date: 2019-07-18T18:24:15Z + +[Term] +id: PATO:0010003 +name: increased propagation velocity +def: "A propagation velocity that is higher than normal." [orcid:0000-0002-7073-9172] +is_a: PATO:0002304 ! increased process quality +is_a: PATO:0010002 ! propagation velocity +created_by: dos +creation_date: 2019-07-18T18:24:25Z + +[Term] +id: PATO:0010004 +name: decreased propagation velocity +def: "A propagation velocity that is lower than normal." [orcid:0000-0002-7073-9172] +is_a: PATO:0002302 ! decreased process quality +is_a: PATO:0010002 ! propagation velocity +created_by: dos +creation_date: 2019-07-18T18:24:36Z + +[Term] +id: PATO:0010005 +name: spatial distribution of a process +def: "A physical quality of a process that is its spatial distribution. For example, bone mineralization follows stereotypical spatial distribution patterns during development, which may be altered in some phenotypes." [orcid:0000-0002-7073-9172] +subset: attribute_slim +is_a: PATO:0002062 ! physical quality of a process +created_by: dos +creation_date: 2019-07-18T18:49:08Z + +[Term] +id: PATO:0015001 +name: absence due to degeneration +def: "Absence due to a degenerative process." [PATOC:PortlandMeetingFeb2015] +subset: absent_slim +subset: value_slim +is_a: PATO:0000462 ! absent +is_a: PATO:0000639 ! degenerate +created_by: cjm + +[Term] +id: PATO:0015002 +name: process efficacy +def: "The ability of a process to produce its output." [PATOC:PortlandMeetingFeb2015] +subset: attribute_slim +is_a: PATO:0001236 ! process quality +created_by: cjm + +[Term] +id: PATO:0015003 +name: decreased efficacy +def: "A decrease in the ability of a process to produce its output." [PATOC:PortlandMeetingFeb2015] +subset: value_slim +is_a: PATO:0002302 ! decreased process quality +is_a: PATO:0015002 ! process efficacy +property_value: RO:0002604 PATO:0015004 +created_by: cjm + +[Term] +id: PATO:0015004 +name: increased efficacy +def: "A increase in the ability of a process to produce its output." [PATOC:PortlandMeetingFeb2015] +subset: value_slim +is_a: PATO:0002304 ! increased process quality +is_a: PATO:0015002 ! process efficacy +property_value: RO:0002604 PATO:0015003 +created_by: cjm + +[Term] +id: PATO:0015005 +name: tendrilous +def: "Slender and spirally coiled." [https://en.wiktionary.org/wiki/tendril] +subset: value_slim +synonym: "tendril-like" RELATED [] +synonym: "tendril-shaped" RELATED [] +synonym: "tendrilled" BROAD [] +is_a: PATO:0000052 ! shape +relationship: has_part PATO:0000404 ! coiled +relationship: has_part PATO:0002212 ! slender + +[Term] +id: PATO:0015006 +name: polymeric +def: "A quality inhering in a structure by virtue of it consisting of many of repeated, similar or identical subunits, arranged in some orderly array." [GOC:DOS, https://github.com/pato-ontology/pato/issues/78] +comment: A complete coverage of this domain would subclasses homopolymeric, copolymeric, crystalline. +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0015007 +name: prominence +def: "A quality inhering in a bearer by virtue of the degree to which the bearers stands out or projects beyond a surface or line." [GOC:CJM] +subset: attribute_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0015008 +name: distensibility +def: "A quality inhering in a bearer by virtue of the extent to which the bearer is capable of being stretched or swollen." [GOC:CJM] +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0015009 +name: humidity +def: "A quality inhering in air by virtue of the partial pressure exerted by the bearer's water vapour content." [https://github.com/pato-ontology/pato/issues/90] +subset: attribute_slim +is_a: PATO:0001547 ! quality of a gas + +[Term] +id: PATO:0015010 +name: increased humidity +def: "An increase in humidity." [https://github.com/pato-ontology/pato/issues/90] +subset: value_slim +synonym: "humid" RELATED [] +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0015009 ! humidity +property_value: RO:0002604 PATO:0015011 + +[Term] +id: PATO:0015011 +name: decreased humidity +def: "An decrease in humidity." [https://github.com/pato-ontology/pato/issues/90] +subset: value_slim +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0015009 ! humidity +property_value: RO:0002604 PATO:0015010 + +[Term] +id: PATO:0015012 +name: quality of a plasma +def: "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of roughly equal proportions of positively and negatively charged particles, having neither a defined volume nor defined shape, having internal magnetic fields, and being electrically conductive." [https://github.com/pato-ontology/pato/issues/88] +subset: attribute_slim +is_a: PATO:0001547 ! quality of a gas + +[Term] +id: PATO:0015013 +name: degree of illumination +def: "The degree to which the bearer is exposed to visible light." [https://github.com/pato-ontology/pato/issues/89] +subset: attribute_slim +is_a: PATO:0001291 ! electromagnetic (EM) radiation quality + +[Term] +id: PATO:0015014 +name: increased degree of illumination +def: "An increase in illumination." [https://github.com/pato-ontology/pato/issues/89] +subset: value_slim +synonym: "illuminated" RELATED [] +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0015013 ! degree of illumination +property_value: RO:0002604 PATO:0015015 + +[Term] +id: PATO:0015015 +name: decreased degree of illumination +def: "An decrease in illumination." [https://github.com/pato-ontology/pato/issues/89] +subset: value_slim +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0015013 ! degree of illumination +property_value: RO:0002604 PATO:0015014 + +[Term] +id: PATO:0015016 +name: stepped +def: "Having a shape or form that resembles a step of a stairway (e.g., a ledge or offset margin)." [http://www.thefreedictionary.com/stepped, https://github.com/pato-ontology/pato/issues/82] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0015017 +name: quality of a colloid +def: "A physical quality inhering in an entity by virtue of a portion of the bearer's molecular or polymolecular constituents present in one phase being dispersed in a portion of the bearer's constituents present in another phase." [ENVO:pb, https://github.com/pato-ontology/pato/issues/91, https://goldbook.iupac.org/html/C/C01172.html] +subset: attribute_slim +is_a: PATO:0002198 ! quality of a substance + +[Term] +id: PATO:0015018 +name: quality of an aerosol +def: "A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being suspended in a gas." [ENVO:pb, https://github.com/pato-ontology/pato/issues/91] +subset: attribute_slim +is_a: PATO:0015017 ! quality of a colloid + +[Term] +id: PATO:0015019 +name: C-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter C." [github:mah11, https://github.com/pato-ontology/pato/issues/96] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0015020 +name: J-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter J." [github:mah11, https://github.com/pato-ontology/pato/issues/96] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0015021 +name: combustibility +def: "The propensity of a material to undergo combustion. Combustion encompasses smouldering and flaming combustion. Combustibility is usually applied to solids." [https://en.wikipedia.org/wiki/Combustibility, https://github.com/EnvironmentOntology/envo/issues/384] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0015022 +name: increased combustibility +def: "An increase in combustibility." [] +subset: value_slim +synonym: "combustible" EXACT [] +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0015021 ! combustibility +property_value: RO:0002604 PATO:0015023 + +[Term] +id: PATO:0015023 +name: decreased combustibility +def: "An decrease in combustibility." [] +subset: value_slim +synonym: "noncombustible" RELATED [] +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0015021 ! combustibility +property_value: RO:0002604 PATO:0015022 + +[Term] +id: PATO:0015024 +name: increased porosity +def: "An increase in porosity." [https://github.com/pato-ontology/pato/issues/110] +subset: value_slim +is_a: PATO:0000973 ! porosity +is_a: PATO:0002305 ! increased object quality + +[Term] +id: PATO:0015025 +name: decreased porosity +def: "An decrease in porosity." [https://github.com/pato-ontology/pato/issues/110] +subset: value_slim +is_a: PATO:0000973 ! porosity +is_a: PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0015024 + +[Term] +id: PATO:0015026 +name: stability +def: "quality, state, or degree of being stable." [https://github.com/pato-ontology/pato/issues/113] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0015027 +name: increased stability +def: "An increase in stability." [https://github.com/pato-ontology/pato/issues/113] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0015026 ! stability + +[Term] +id: PATO:0015028 +name: decreased stability +def: "A decrease in stability." [https://github.com/pato-ontology/pato/issues/113] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0015026 ! stability +property_value: RO:0002604 PATO:0015027 + +[Term] +id: PATO:0015029 +name: quality of a suspension +def: "A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being transiently dispersed in a solid, liquid, or gas before settling due to gravity or centrifugal forces." [ENVO:pb, https://github.com/pato-ontology/pato/issues/91] +subset: attribute_slim +is_a: PATO:0002198 ! quality of a substance + +[Term] +id: PATO:0015030 +name: plume-shaped +def: "A shape that ineres in a bearer by virtue of the bearer's mass being distributed in a feather-like fashion." [https://github.com/pato-ontology/pato/issues/122] +subset: value_slim +synonym: "feather-shaped" EXACT [] +synonym: "plumed" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0020000 +name: genotypic sex +def: "A biological sex quality inhering in an individual based upon genotypic composition of sex chromosomes." [PATOC:MAH] +comment: Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, we have XY, XX, though abnormal XXY, X0, XYY, and other combinations are possible. +is_a: PATO:0000047 ! biological sex +created_by: mah + +[Term] +id: PATO:0020001 +name: male genotypic sex +def: "A biological sex quality inhering in an individual based upon genotypic composition that confers the capability for an organism to differentiate male gonads." [PATOC:MAH] +comment: Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XY, though abnormal XXY and XYY would also result in a male phenotypic outcome. +is_a: PATO:0020000 ! genotypic sex +created_by: mah + +[Term] +id: PATO:0020002 +name: female genotypic sex +def: "A biological sex quality inhering in an individual or a population based upon genotypic composition that confers the capability for an organism to differentiate female gonads." [PATOC:MAH] +comment: Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XX, though abnormal X0 and XXX would also result in a female phenotypic outcome. +is_a: PATO:0020000 ! genotypic sex +created_by: mah + +[Term] +id: PATO:0025000 +name: potability +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be used as a safe means of hydration." [Wikipedia:https\://en.wikipedia.org/wiki/Drinking_water] +synonym: "drinkability" EXACT [] +is_a: PATO:0001018 ! physical quality +created_by: pbuttigieg +creation_date: 2015-09-01T16:16:44Z + +[Term] +id: PATO:0025001 +name: non-potable +def: "A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration." [Wikipedia:https\://en.wikipedia.org/wiki/Drinking_water] +synonym: "undrinkable" EXACT [] +is_a: PATO:0025000 ! potability +disjoint_from: PATO:0025002 ! potable +property_value: RO:0002604 PATO:0025002 +created_by: pbuttigieg +creation_date: 2015-09-01T16:18:57Z + +[Term] +id: PATO:0025002 +name: potable +def: "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration." [Wikipedia:https\://en.wikipedia.org/wiki/Drinking_water] +synonym: "drinkable" EXACT [] +is_a: PATO:0025000 ! potability +property_value: RO:0002604 PATO:0025001 +created_by: pbuttigieg +creation_date: 2015-09-01T16:19:02Z + +[Term] +id: PATO:0030000 +name: anterioralized +def: "A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some or all of what are normally posterior structures." [PATOC:EJS] +is_a: PATO:0000646 ! malformed +created_by: segerdel + +[Term] +id: PATO:0030001 +name: dorsalized +def: "A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally dorsal structures and missing some or all of what are normally ventral structures." [PATOC:EJS] +is_a: PATO:0000646 ! malformed +created_by: segerdel + +[Term] +id: PATO:0030002 +name: posterioralized +def: "A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally posterior structures and missing some or all of what are normally anterior structures." [PATOC:EJS] +is_a: PATO:0000646 ! malformed +created_by: segerdel + +[Term] +id: PATO:0030003 +name: ventralized +def: "A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally ventral structures and missing some or all of what are normally dorsal structures." [PATOC:EJS] +is_a: PATO:0000646 ! malformed +created_by: segerdel + +[Term] +id: PATO:0030004 +name: partially anterioralized +def: "An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some but not all of what are normally posterior structures." [PATOC:EJS] +is_a: PATO:0030000 ! anterioralized +created_by: segerdel + +[Term] +id: PATO:0030005 +name: partially dorsalized +def: "A dorsalized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally dorsal structures and missing some but not all of what are normally ventral structures." [PATOC:EJS] +is_a: PATO:0030001 ! dorsalized +created_by: segerdel + +[Term] +id: PATO:0030006 +name: partially posterioralized +def: "A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally posterior structures and missing some but not all of what are normally anterior structures." [PATOC:EJS] +is_a: PATO:0030002 ! posterioralized +created_by: segerdel + +[Term] +id: PATO:0030007 +name: partially ventralized +def: "A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally ventral structures and missing some but not all of what are normally dorsal structures." [PATOC:EJS] +is_a: PATO:0030003 ! ventralized +created_by: segerdel + +[Term] +id: PATO:0040000 +name: heterotaxic +def: "An oriented quality inhering in a bearer by virtue of the bearer's being abnormally placed or arranged." [http://medical-dictionary.thefreedictionary.com/heterotaxic] +is_a: PATO:0000625 ! inverted +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-05-21T22:44:38Z xsd:dateTime + +[Term] +id: PATO:0040001 +name: ring-shaped +def: "Shaped like a ring" [https://orcid.org/0000-0002-6601-2165] +synonym: "annular" EXACT [] +is_a: PATO:0000947 ! elliptic +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T03:56:53Z xsd:dateTime + +[Term] +id: PATO:0040002 +name: originates from +def: "A positional quality inhering in a bearer by virtue of some aspect of that bearer beginning from a position on another entity." [] +subset: relational_slim +is_a: PATO:0000140 ! position +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T04:10:53Z xsd:dateTime + +[Term] +id: PATO:0040003 +name: pathogenicity +def: "The ability of a pathogen to produce an infectious disease or disorder in an another organism." [https://orcid.org/0000-0001-8941-3984] +is_a: PATO:0001995 ! organismal quality +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:24:52Z xsd:dateTime + +[Term] +id: PATO:0040004 +name: plush +def: "A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness." [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0003-4606-0597] +is_a: PATO:0000150 ! texture +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:39:30Z xsd:dateTime + +[Term] +id: PATO:0040005 +name: posteroventral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally." [https://orcid.org/0000-0003-3162-7490] +synonym: "posteroventrally oriented" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T22:54:16Z xsd:dateTime + +[Term] +id: PATO:0040006 +name: crown like +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown." [https://orcid.org/0000-0003-3162-7490] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:09:59Z xsd:dateTime + +[Term] +id: PATO:0040007 +name: shell shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell." [https://orcid.org/0000-0003-3162-7490] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:12:47Z xsd:dateTime + +[Term] +id: PATO:0040008 +name: fringed +def: "A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/fringe] +is_a: PATO:0002267 ! edge shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:15:10Z xsd:dateTime + +[Term] +id: PATO:0040009 +name: bowl shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl." [https://orcid.org/0000-0003-3162-7490] +is_a: PATO:0002008 ! concave 3-D shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:17:01Z xsd:dateTime + +[Term] +id: PATO:0040010 +name: mobile relative to +def: "Mobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] +comment: For example, distinct anteroposterior mobility of palatine relative to mesethmoid. +is_a: PATO:0000004 ! mobility +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:20:08Z xsd:dateTime + +[Term] +id: PATO:0040011 +name: immobile relative to +def: "Immobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] +comment: For example: distinct anteroposterior immobility of palatine relative to mesethmoid. +is_a: PATO:0000004 ! mobility +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:21:07Z xsd:dateTime + +[Term] +id: PATO:0040012 +name: plug shaped +def: "A shape that is in the form of a plug, being tube-like and expanded on one end." [https://orcid.org/0000-0003-3162-7490] +synonym: "plug like" EXACT [] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:24:41Z xsd:dateTime + +[Term] +id: PATO:0040013 +name: dorsomedial orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially." [https://orcid.org/0000-0003-3162-7490] +synonym: "dorsomedially directed" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:27:57Z xsd:dateTime + +[Term] +id: PATO:0040014 +name: band shaped +def: "A shape that is in the form of a narrow strip encircling an object." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/band] +synonym: "band like" EXACT [] +synonym: "band-like" EXACT [] +synonym: "strip like" EXACT [] +synonym: "strip-like" EXACT [] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:31:51Z xsd:dateTime + +[Term] +id: PATO:0040015 +name: trough shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling that of a trough, being narrow, long, and boxlike in shape." [http://www.dictionary.com/browse/trough, https://orcid.org/0000-0003-3162-7490] +synonym: "trough like" EXACT [] +synonym: "trough-like" EXACT [] +synonym: "trough-shaped" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:35:51Z xsd:dateTime + +[Term] +id: PATO:0040016 +name: pentagonal +def: "A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/pentagonal] +is_a: PATO:0002006 ! 2-D shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:39:48Z xsd:dateTime + +[Term] +id: PATO:0040017 +name: dysplastic growth +def: "A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal." [https://www.cancer.gov/publications/dictionaries/cancer-terms/def/dysplasia] +synonym: "dysgenesis" NARROW [] +is_a: PATO:0001433 ! growth quality of occurrent +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T19:01:51Z xsd:dateTime + +[Term] +id: PATO:0040019 +name: fibrotic +def: "Fibrosis is the formation of excess fibrous connective tissue in an organ or tissue in a reparative or reactive process." [https://en.wikipedia.org/wiki/Fibrosis] +is_a: PATO:0000025 ! composition +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T23:16:17Z xsd:dateTime + +[Term] +id: PATO:0040020 +name: spayed female +def: "Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal." [] +is_a: PATO:0000383 ! female +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-16T22:52:49Z xsd:dateTime + +[Term] +id: PATO:0040025 +name: lesioned +def: "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present." [NCIT:C3824] +is_a: PATO:0000141 ! structure +created_by: http://orcid.org/0000-0001-5208-3432 + +[Term] +id: PATO:0045000 +name: normal rate +def: "A rate which is relatively normal." [] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000161 ! rate +is_a: PATO:0045073 ! normal process quality + +[Term] +id: PATO:0045001 +name: normal object quality +def: "A quality of an object that has a value that is normal or average." [] +is_a: PATO:0001241 ! physical object quality +relationship: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-21T14:11:01Z + +[Term] +id: PATO:0045002 +name: normal acidity +def: "An acidity which is relatively normal." [] +subset: value_slim +is_a: PATO:0001842 ! acidity +is_a: PATO:0045001 ! normal object quality + +[Term] +id: PATO:0045003 +name: normal adhesivity +def: "A adhesivity which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0002331 ! adhesive +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045004 +name: normal affinity +def: "An affinity which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0002070 ! affinity +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045005 +name: normal age +def: "An age which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0000011 ! age +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045006 +name: normal avidity +def: "An avidity which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002073 ! avidity +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045007 +name: normal behavioural activity +def: "A behavioural quality of a process inhering in a bearer by virtue of the bearer's exhibiting normal or average activity." [] +subset: value_slim +is_a: PATO:0001707 ! behavioural active +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045008 +name: normal cellular motility +def: "A cellular motility which is normal or average." [] +subset: value_slim +is_a: PATO:0001488 ! cellular motility +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045009 +name: normal coiling +def: "A coiling which is normal or average." [] +subset: cell_quality +subset: value_slim +is_a: PATO:0000404 ! coiled +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045010 +name: normal concentration +def: "A concentration which is relatively normal or average." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0001159 ! concentrated +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045011 +name: normal contractility +def: "A contractility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001690 ! contractile +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045012 +name: normal coordination +def: "A coordination which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000769 ! coordinated +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045013 +name: normal curvature +def: "A curvature which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0000406 ! curved +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045014 +name: normal distance +def: "A distance which is relatively normal or average." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0000040 ! distance +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045015 +name: normal efficiency +def: "An efficiency which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0001678 ! efficient +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045016 +name: normal elasticity +def: "An elasticity which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0001171 ! elastic +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045017 +name: normal fecundity +def: "A fecundity which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000273 ! fecundity +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045018 +name: normal female fertility +def: "A female fertility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000888 ! female fertile +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045019 +name: normal female receptivity +def: "A female receptivity which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001720 ! female receptivity +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045020 +name: normal fertility +def: "A fertility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000955 ! fertile +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045021 +name: normal flexibility +def: "A flexibility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001544 ! flexible +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045022 +name: normal fluid flow +def: "A fluid flow which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0002243 ! fluid flow rate +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045023 +name: normal fluorescence +def: "A fluorescence which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0001290 ! fluorescent +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045024 +name: normal force +def: "A force which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0001035 ! force +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045025 +name: normal fragility +def: "A fragility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001362 ! fragile +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045026 +name: normal life span +def: "A life span which is relatively normal or average." [] +is_a: PATO:0000050 ! life span +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045027 +name: normal magnetism +def: "A magnetism which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001685 ! magnetic +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045028 +name: normal male fertility +def: "A male fertility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000891 ! male fertile +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045029 +name: normal male receptivity +def: "A male receptivity which is relatively normal or average." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0001721 ! male receptivity +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045030 +name: normal mass +def: "A mass which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0000125 ! mass +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045031 +name: normal mass density +def: "A density which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0001164 ! dense +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045032 +name: normal mobility +def: "A mobility which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0000299 ! mobile +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045033 +name: normal odor +def: "An odor quality of having relatively normal or average odor." [] +subset: value_slim +is_a: PATO:0001331 ! odorous +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045034 +name: normal osmolality +def: "An osmolality which is relatively normal or average odor." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0002027 ! osmolality +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045035 +name: normal osmolarity +def: "An osmolarity which is relatively normal or average odor." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0001655 ! osmolarity +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045036 +name: normal permeability +def: "A permeability which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000982 ! permeable +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045037 +name: normal phosphorylation +def: "A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a normal or average extent." [] +subset: value_slim +is_a: PATO:0002220 ! phosphorylated +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045038 +name: normal photosensitivity +def: "A photosensitivity which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000547 ! photosensitive +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045039 +name: normal pigmentation +def: "A degree of pigmentation quality which is relatively normal or average" [] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002248 ! pigmented +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045040 +name: normal position +def: "A position which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000140 ! position +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045041 +name: normal angle to +def: "An angle which is relatively normal or average" [] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle +is_a: PATO:0045040 ! normal position +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045042 +name: normal distribution +def: "A distribution which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001566 ! distributed +is_a: PATO:0045040 ! normal position +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045043 +name: normal elevation +def: "An elevation which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001687 ! elevation +is_a: PATO:0045040 ! normal position +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045044 +name: normal pressure +def: "A pressure which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001025 ! pressure +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045045 +name: normal radioactivity +def: "A radioactivity which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001741 ! radioactive +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045046 +name: normal radiopacity +def: "A radiopacity which is relatively normal or average" [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002136 ! radiopacity +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045047 +name: normal resistance to +def: "A resistance to a stimulus which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001178 ! resistant to +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045048 +name: normal sensitivity to irradiation +def: "A sensitivity to irradiation which is relatively normal or average" [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001806 ! sensitivity to irradiation +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045049 +name: normal sensitivity toward +def: "A sensitivity toward an external stimulus which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000516 ! sensitive toward +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045050 +name: normal size +def: "A size quality which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000117 ! size +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045051 +name: normal area +def: "An area which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001323 ! area +is_a: PATO:0045050 ! normal size +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045052 +name: normal depth +def: "A depth quality which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001595 ! depth +is_a: PATO:0045050 ! normal size +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045053 +name: normal height +def: "A height which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000119 ! height +is_a: PATO:0045050 ! normal size +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045054 +name: normal length +def: "A length quality which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000122 ! length +is_a: PATO:0045050 ! normal size +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045055 +name: normal diameter +def: "A diameter which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001334 ! diameter +is_a: PATO:0045054 ! normal length +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045056 +name: normal anterior-posterior diameter +def: "An anterior-posterior diameter which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0002041 ! anterior-posterior diameter +is_a: PATO:0045055 ! normal diameter +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045057 +name: normal perimeter +def: "A perimeter which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001711 ! perimeter +is_a: PATO:0045054 ! normal length +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045058 +name: normal circumference +def: "A circumference which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001648 ! circumference +is_a: PATO:0045057 ! normal perimeter +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045059 +name: normal thickness +def: "A thickness which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000915 ! thickness +is_a: PATO:0045050 ! normal size +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045060 +name: normal volume +def: "A volume which is relatively normal or average" [] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000918 ! volume +is_a: PATO:0045050 ! normal size +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045061 +name: normal width +def: "A width which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000921 ! width +is_a: PATO:0045050 ! normal size +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045062 +name: normal solubility +def: "A solubility which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001537 ! soluble in +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045063 +name: normal speed +def: "A speed which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000008 ! speed +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045064 +name: normal strength +def: "A strength which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001230 ! strength +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045065 +name: normal fatigability +def: "A fatigability which is relatively normal or average" [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001815 ! fatigability +is_a: PATO:0045064 ! normal strength +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045066 +name: normal susceptibility toward +def: "A susceptibility toward an external stimulus which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001152 ! susceptible toward +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045067 +name: normal temperature +def: "A temperature which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000146 ! temperature +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045068 +name: normal tendency +def: "A tendency which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0002360 ! tendency +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045069 +name: normal threshold +def: "A threshold which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000152 ! threshold +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045070 +name: normal tolerance to +def: "A tolerance to an external stimulus which is relatively normal or average" [] +subset: relational_slim +subset: value_slim +is_a: PATO:0000515 ! tolerant to +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045071 +name: normal tonicity +def: "A tonicity which is relatively normal or average" [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001439 ! tonicity +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045072 +name: normal turgor +def: "A turgor which is relatively normal or average" [] +subset: cell_quality +subset: value_slim +is_a: PATO:0001620 ! turgor +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045073 +name: normal process quality +def: "A quality of aprocess that has a value that is normal or average." [] +is_a: PATO:0001236 ! process quality +relationship: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-21T14:11:01Z + +[Term] +id: PATO:0045074 +name: normal variability +def: "A variability which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001227 ! variant +relationship: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045075 +name: normal variability of color +def: "A variability which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001615 ! variant color +relationship: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045076 +name: normal variability of rate +def: "A variability of rate which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001586 ! variability of rate +relationship: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045077 +name: normal variability of size +def: "A variability of size which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001956 ! variability of size +relationship: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045078 +name: normal variability of temperature +def: "A variability of temperature which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001314 ! variant temperature +relationship: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045079 +name: normal velocity +def: "A velocity which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0002242 ! velocity +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045080 +name: normal virulence +def: "A virulence which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0002146 ! virulence +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045081 +name: normal viscosity +def: "A viscosity which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000998 ! viscous +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045082 +name: normal waxiness +def: "A waxiness which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0002381 ! waxiness +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045083 +name: normal wetness +def: "A wetness which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001823 ! wet +is_a: PATO:0045001 ! normal object quality +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045084 +name: normal duration +def: "A duration quality of a process which is relatively normal." [] +subset: value_slim +is_a: PATO:0001309 ! duration +is_a: PATO:0045073 ! normal process quality + +[Term] +id: PATO:0045085 +name: normal duration of temperature +def: "A duration quality of temperature quality of a process which is relatively normal." [] +subset: value_slim +is_a: PATO:0001310 ! duration of temperature +is_a: PATO:0045084 ! normal duration + +[Term] +id: PATO:0045086 +name: normal occurrence +def: "An occurrence which is relatively normal." [] +subset: value_slim +is_a: PATO:0000057 ! occurrence +is_a: PATO:0045073 ! normal process quality + +[Term] +id: PATO:0045087 +name: normal frequency +def: "A frequency which is relatively normal." [] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000044 ! frequency +is_a: PATO:0045000 ! normal rate + +[Term] +id: PATO:0045088 +name: normal sensitivity of a process +def: "A sensitivity of a process which is relatively normal." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0001457 ! sensitivity of a process +is_a: PATO:0045073 ! normal process quality + +[Term] +id: PATO:0045089 +name: normal sensitivity of a process to oxygen +def: "A sensitivity of occurrent to oxygen which is relatively normal." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001459 ! aerobic (for occurrence) +is_a: PATO:0045088 ! normal sensitivity of a process + +[Term] +id: PATO:0045090 +name: cardinal direction +def: "The four cardinal directions or cardinal points are the directions north, east, south, and west, commonly denoted by their initials, N, E, S, W. East and west are at right angles to north and south, with east being in the clockwise direction of rotation from north and west being directly opposite east." [Wikipedia:http\://en.wikipedia.org/wiki/Cardinal_direction] +subset: value_slim +is_a: PATO:0000039 ! direction +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045091 +name: north +def: "North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west." [Wikipedia:http\://en.wikipedia.org/wiki/North] +subset: value_slim +is_a: PATO:0045090 ! cardinal direction +property_value: RO:0002604 PATO:0045093 +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045092 +name: east +def: "East is one of the four cardinal directions or points of the compass. It is the opposite direction from west." [Wikipedia:http\://en.wikipedia.org/wiki/East] +subset: value_slim +is_a: PATO:0045090 ! cardinal direction +property_value: RO:0002604 PATO:0045094 +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045093 +name: south +def: "South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west." [Wikipedia:http\://en.wikipedia.org/wiki/South] +subset: value_slim +is_a: PATO:0045090 ! cardinal direction +property_value: RO:0002604 PATO:0045091 +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045094 +name: west +def: "West is one of the four cardinal directions or points of the compass. It is the opposite direction from east." [Wikipedia:http\://en.wikipedia.org/wiki/West] +subset: value_slim +is_a: PATO:0045090 ! cardinal direction +property_value: RO:0002604 PATO:0045092 +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0050000 +name: rate of occurence +def: "The number of repeated events per unit time, occurring in a repeating series. (e.g. the number of heart beats occurring over 1 minute)" [https://orcid.org/0000-0002-9943-9018] +is_a: PATO:0000161 ! rate + +[Term] +id: PATO:0050001 +name: rate of continuous process +def: "The rate of output of a continuous process. Example include: growth rate, cell migration rate, enzyme reaction rate." [https://orcid.org/0000-0002-9943-9018] +is_a: PATO:0000161 ! rate + +[Term] +id: PATO:0055001 +name: decreased spatial extent of a process +def: "A spatial distribution of a process in which the process occupies a smaller length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type." [orcid:0000-0003-4148-4606] +is_a: PATO:0002302 ! decreased process quality +is_a: PATO:0010005 ! spatial distribution of a process +created_by: midori +creation_date: 2019-07-29T14:22:24Z + +[Term] +id: PATO:0055002 +name: increased spatial extent of a process +def: "A spatial distribution of a process in which the process occupies a greater length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type." [https://orcid.org/0000-0003-4148-4606] +is_a: PATO:0002304 ! increased process quality +is_a: PATO:0010005 ! spatial distribution of a process +created_by: midori +creation_date: 2019-07-29T14:23:31Z + +[Term] +id: PATO:0060001 +name: sex-specific +def: "A quality inhering in a bearer by virtue of the bearer's being present in one sex and absent from the other in members of the same species." [http://orcid.org/0000-0002-1373-1705] +is_a: PATO:0002451 ! sexually dimorphic +created_by: http://orcid.org/0000-0002-1373-1705 +creation_date: 2019-08-23T08:46:30Z + +[Term] +id: PATO:0060002 +name: male-specific +def: "A quality inhering in a bearer by virtue of the bearer's being present in males and absent from females in members of the same species." [http://orcid.org/0000-0002-1373-1705] +is_a: PATO:0060001 ! sex-specific +created_by: http://orcid.org/0000-0002-1373-1705 +creation_date: 2019-08-23T08:49:59Z + +[Term] +id: PATO:0060003 +name: female-specific +def: "A quality inhering in a bearer by virtue of the bearer's being present in females and absent from males in members of the same species." [http://orcid.org/0000-0002-1373-1705] +is_a: PATO:0060001 ! sex-specific +created_by: http://orcid.org/0000-0002-1373-1705 +creation_date: 2019-08-23T08:51:22Z + +[Typedef] +id: correlates_with +name: correlates_with + +[Typedef] +id: decreased_in_magnitude_relative_to +name: decreased_in_magnitude_relative_to +def: "q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." [PATOC:CJM] +comment: This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'. +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality +is_transitive: true +is_a: different_in_magnitude_relative_to ! different_in_magnitude_relative_to + +[Typedef] +id: different_in_magnitude_relative_to +name: different_in_magnitude_relative_to +def: "q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." [PATOC:CJM] +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality + +[Typedef] +id: directly_associated_with +name: directly_associated_with +def: "q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear." [PATOC:cjm, Wikipedia:Association_(statistics)] +comment: Example: 'Lewy bodies increased number related to dystrophic neurite increased number' (from annotation of PMID:8740227 in http://ccdb.ucsd.edu/1.0/NDPO.owl#ndpo_404). Here the increase in the number of lewy bodies is directly_associated_with the increase in the number of dystrophic neurites.\nAssociation is weaker than correlation or proportionality. These relations may be later added to PATO. +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality +created_by: cjm +creation_date: 2009-08-26T02:50:08Z + +[Typedef] +id: has_cross_section +name: has_cross_section +def: "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2." [PATOC:CJM] +comment: Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round. + +[Typedef] +id: has_dividend_entity +name: has_dividend_entity +domain: PATO:0001470 ! proportionality to + +[Typedef] +id: has_dividend_quality +name: has_dividend_quality +domain: PATO:0001470 ! proportionality to +range: PATO:0000001 ! quality +is_a: has_ratio_quality ! has_ratio_quality + +[Typedef] +id: has_divisor_entity +name: has_divisor_entity +domain: PATO:0001470 ! proportionality to + +[Typedef] +id: has_divisor_quality +name: has_divisor_quality +domain: PATO:0001470 ! proportionality to +range: PATO:0000001 ! quality +is_a: has_ratio_quality ! has_ratio_quality + +[Typedef] +id: has_part +name: has part +name: has_part +def: "a core relation that holds between a whole and its part" [] +def: "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2." [PATOC:CJM] +comment: We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. +xref: BFO:0000051 +property_value: IAO:0000111 "has part" xsd:string +property_value: IAO:0000112 "my body has part my brain (continuant parthood, two material entities)" xsd:string +property_value: IAO:0000112 "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" xsd:string +property_value: IAO:0000112 "this year has part this day (occurrent parthood)" xsd:string +property_value: IAO:0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." xsd:string +property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string +property_value: IAO:0000118 "has_part" xsd:string +property_value: RO:0001900 RO:0001901 +is_transitive: true + +[Typedef] +id: has_ratio_quality +name: has_ratio_quality +domain: PATO:0001470 ! proportionality to +range: PATO:0000001 ! quality + +[Typedef] +id: has_relative_magnitude +name: has_relative_magnitude + +[Typedef] +id: increased_in_magnitude_relative_to +name: increased_in_magnitude_relative_to +def: "q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." [PATOC:CJM] +comment: This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'. +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality +is_transitive: true +is_a: different_in_magnitude_relative_to ! different_in_magnitude_relative_to + +[Typedef] +id: inversely_associated_with +name: inversely_associated_with +def: "q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear." [PATOC:cjm, Wikipedia:Association_(statistics)] +comment: Association is weaker than correlation or proportionality. These relations may be later added to PATO. +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality +created_by: cjm +creation_date: 2009-08-26T02:50:24Z + +[Typedef] +id: is_magnitude_of +name: is_magnitude_of +namespace: pato.ontology + +[Typedef] +id: is_measurement_of +name: is_measurement_of +namespace: pato.ontology + +[Typedef] +id: is_unit_of +name: is_unit_of +namespace: pato.ontology + +[Typedef] +id: part_of +name: part of +name: part_of +def: "a core relation that holds between a part and its whole" [] +xref: BFO:0000050 +property_value: IAO:0000111 "is part of" xsd:string +property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string +property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string +property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string +property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string +property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string +property_value: IAO:0000118 "part_of" xsd:string +property_value: RO:0001900 RO:0001901 +property_value: seeAlso http://www.obofoundry.org/ro/#OBO_REL:part_of xsd:string +is_transitive: true +inverse_of: has_part ! has part + +[Typedef] +id: realized_by +name: realized_by + +[Typedef] +id: reciprocal_of +name: reciprocal_of +def: "q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e." [PATOC:CJM] +comment: There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality. + +[Typedef] +id: similar_in_magnitude_relative_to +name: similar_in_magnitude_relative_to +def: "q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." [PATOC:CJM] +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality + +[Typedef] +id: singly_occurring_form_of +name: singly_occurring_form_of +comment: PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them. +synonym: "monadic_form_of" EXACT [] + +[Typedef] +id: towards +name: towards +comment: Relation binding a relational quality or disposition to the relevant type of entity. + diff --git a/pato-simple.owl b/pato-simple.owl new file mode 100644 index 00000000..787de563 --- /dev/null +++ b/pato-simple.owl @@ -0,0 +1,48812 @@ + + + + + OBO-Edit 2.3.1 + 07:02:2018 10:27 + quality + 1.2 + segerdel + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Abnormal/normal slim + + + + + + + + + Absent/present slim + + + + + + + + + Attribute slim + + + + + + + + + cell_quality + + + + + + + + + Disposition slim + + + + + + + + + Human phenotype slim + + + + + + + + + Pathology slim + + + + + + + + + Relational slim: types of quality that require an additional entity in order to exist + + + + + + + + + Scalar slim + + + + + + + + + Value slim + + + + + + + + + + + + + + + + + + + + + subset_property + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + is part of + my brain is part of my body (continuant parthood, two material entities) + my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity) + this day is part of this year (occurrent parthood) + a core relation that holds between a part and its whole + Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other. + Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) + +A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'. + part_of + + BFO:0000050 + quality + part_of + part_of + part of + part_of + http://www.obofoundry.org/ro/#OBO_REL:part_of + + + + + + + + + has part + my body has part my brain (continuant parthood, two material entities) + my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity) + this year has part this day (occurrent parthood) + Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2. + a core relation that holds between a whole and its part + Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part. + Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) + +A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'. + has_part + + BFO:0000051 + quality + has_part + has_part + We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. + has part + has_part + + + + + Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2. + PATOC:CJM + + + + + + + + quality + correlates_with + correlates_with + + + + + + + + + + + + q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + quality + decreased_in_magnitude_relative_to + This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'. + decreased_in_magnitude_relative_to + + + + + q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + PATOC:CJM + + + + + + + + + + q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + quality + different_in_magnitude_relative_to + different_in_magnitude_relative_to + + + + + q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + PATOC:CJM + + + + + + + + + + q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear. + cjm + 2009-08-26T02:50:08Z + quality + directly_associated_with + Example: 'Lewy bodies increased number related to dystrophic neurite increased number' (from annotation of PMID:8740227 in http://ccdb.ucsd.edu/1.0/NDPO.owl#ndpo_404). Here the increase in the number of lewy bodies is directly_associated_with the increase in the number of dystrophic neurites. +Association is weaker than correlation or proportionality. These relations may be later added to PATO. + directly_associated_with + + + + + q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear. + PATOC:cjm + Wikipedia:Association_(statistics) + + + + + + + + s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2. + quality + has_cross_section + Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round. + has_cross_section + + + + + s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2. + PATOC:CJM + + + + + + + + + quality + has_dividend_entity + has_dividend_entity + + + + + + + + + + + quality + has_dividend_quality + has_dividend_quality + + + + + + + + + quality + has_divisor_entity + has_divisor_entity + + + + + + + + + + + quality + has_divisor_quality + has_divisor_quality + + + + + + + + + + quality + has_ratio_quality + has_ratio_quality + + + + + + + + quality + has_relative_magnitude + has_relative_magnitude + + + + + + + + + + + + q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + quality + increased_in_magnitude_relative_to + This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'. + increased_in_magnitude_relative_to + + + + + q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + PATOC:CJM + + + + + + + + + + q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear. + cjm + 2009-08-26T02:50:24Z + quality + inversely_associated_with + Association is weaker than correlation or proportionality. These relations may be later added to PATO. + inversely_associated_with + + + + + q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear. + PATOC:cjm + Wikipedia:Association_(statistics) + + + + + + + + pato.ontology + is_magnitude_of + is_magnitude_of + + + + + + + + pato.ontology + is_measurement_of + is_measurement_of + + + + + + + + pato.ontology + is_unit_of + is_unit_of + + + + + + + + quality + realized_by + realized_by + + + + + + + + q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e. + quality + reciprocal_of + There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality. + reciprocal_of + + + + + q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e. + PATOC:CJM + + + + + + + + + + q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + quality + similar_in_magnitude_relative_to + similar_in_magnitude_relative_to + + + + + q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + PATOC:CJM + + + + + + + + monadic_form_of + quality + singly_occurring_form_of + PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them. + singly_occurring_form_of + + + + + + + + quality + towards + Relation binding a relational quality or disposition to the relevant type of entity. + towards + + + + + + + + + + + + + quality + PATO:0000000 + obsolete pato + true + + + + + + + + A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities + PATO:0000072 + quality + PATO:0000001 + quality + + + + + A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities + PATOC:GVG + + + + + + + + quality + PATO:0000002 + obsolete value + true + + + + + + + + quality + PATO:0000003 + obsolete assay + true + + + + + + + + + A quality of inhering in a bearer by virtue of the bearer's disposition to move freely. + quality + PATO:0000004 + + + + Should be defined using translocation. + mobility + + + + + A quality of inhering in a bearer by virtue of the bearer's disposition to move freely. + PATOC:GVG + + + + + + + + quality + PATO:0000005 + obsolete absolute activity + true + + + + + + + + quality + PATO:0000006 + obsolete process + true + + + + + + + + quality + PATO:0000007 + obsolete relative activity + true + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's scalar absolute value of the rate of change of the bearer's position. + quality + velocity + PATO:0000008 + + + speed + + + + + A physical quality inhering in a bearer by virtue of the bearer's scalar absolute value of the rate of change of the bearer's position. + Wikipedia:http://en.wikipedia.org/wiki/Velocity + + + + + + + + quality + PATO:0000009 + obsolete absolute speed + true + + + + + + + + quality + PATO:0000010 + obsolete relative speed + true + + + + + + + + + A time quality inhering in a bearer by virtue of how long the bearer has existed. + quality + PATO:0000011 + + + age + + + + + A time quality inhering in a bearer by virtue of how long the bearer has existed. + WordNet:WordNet + + + + + + + + quality + PATO:0000012 + obsolete absolute age + true + + + + + + + + quality + PATO:0000013 + obsolete relative age + true + + + + + + + + + + A composite chromatic quality composed of hue, saturation and intensity parts. + PATO:0000020 + colour + relative color + quality + PATO:0000014 + + color + + + + + A composite chromatic quality composed of hue, saturation and intensity parts. + PATOC:GVG + + + + + + + + + A chromatic scalar-circular quality inhering in an object that manifests in an observer by virtue of the dominant wavelength of the visible light; may be subject to fiat divisions, typically into 7 or 8 spectra. + quality + PATO:0000015 + + color hue + + + + + A chromatic scalar-circular quality inhering in an object that manifests in an observer by virtue of the dominant wavelength of the visible light; may be subject to fiat divisions, typically into 7 or 8 spectra. + PATOC:cjm + + + + + + + + + A scalar optical property that is the intensity, value or amount of perceived light. + color intensity + color lightness + color value + quality + PATO:0000016 + + Color brightness refers to the intensity, lightness or value of the light present. Think of this as a dimmer switch. + color brightness + + + + + A scalar optical property that is the intensity, value or amount of perceived light. + PATOC:MAH + + + + + + + + + A scalar chromatic property that is the degree of purity of perceived light. + quality + PATO:0000017 + + Color saturation refers to the amount of white light or gray paint mixed in with the hue (single wavelength) and is a measure of color purity. + color saturation + + + + + A scalar chromatic property that is the degree of purity of perceived light. + PATOC:GVG + + + + + + + + + A luminous flux quality inhering in a bearer by virtue of the bearer's emitting longer wavelength light following the absorption of shorter wavelength radiation; fluorescence is common with aromatic compounds with several rings joined together. + quality + PATO:0000018 + + fluorescence + + + + + A luminous flux quality inhering in a bearer by virtue of the bearer's emitting longer wavelength light following the absorption of shorter wavelength radiation; fluorescence is common with aromatic compounds with several rings joined together. + PATOC:GVG + + + + + + + + + A chromatic property that is the relative position of different hues or degrees of saturation. + quality + PATO:0000019 + + color pattern + + + + + A chromatic property that is the relative position of different hues or degrees of saturation. + PATOC:GVG + + + + + + + + + + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to harmonious coexistence. + quality + PATO:0000021 + + + + Needs redefined or obsoleted. Is this the same as genetic incompatibility? Moved to organismal quality. + compatibility + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to harmonious coexistence. + PATOC:GVG + + + + + + + + quality + PATO:0000022 + obsolete gametophytic compatability + true + + + + + + + + quality + PATO:0000023 + obsolete relative compatability + true + + + + + + + + quality + PATO:0000024 + obsolete sporophytic compatability + true + + + + + + + + + A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts. + PATO:0002015 + composed of + compositionality + content + structure, composition + quality + PATO:0000025 + + + For example calcium composition (which may inhere in bone), haemoglobin composition (which may inhere in blood). + composition + + + + + A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts. + PATOC:GVG + + + + + + + + quality + PATO:0000026 + obsolete carbohydrate composition + true + + + + + + + + quality + PATO:0000027 + obsolete electrolyte composition + true + + + + + + + + quality + PATO:0000028 + obsolete macromolecular composition + true + + + + + + + + quality + PATO:0000029 + obsolete protein composition + true + + + + + + + + quality + PATO:0000030 + obsolete enzyme composition + true + + + + + + + + quality + PATO:0000031 + obsolete metabolite composition + true + + + + + + + + quality + PATO:0000032 + obsolete secondary product composition + true + + + + + + + + + A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance. + concentration + quality + PATO:0000033 + + + + concentration of + + + + + A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance. + Wikipedia:http://en.wikipedia.org/wiki/concentration + + + + + + + + quality + PATO:0000034 + obsolete protein concentration + true + + + + + + + + quality + PATO:0000035 + obsolete carbohydrate concentration + true + + + + + + + + quality + PATO:0000036 + obsolete water content + true + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's density, firmness, or viscosity. + quality + firmness + PATO:0000037 + + + consistency + + + + + A physical quality inhering in a bearer by virtue of the bearer's density, firmness, or viscosity. + PATOC:GVG + + + + + + + + quality + PATO:0000038 + obsolete gel consistency + true + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's orientation in space. + quality + PATO:0000039 + + TODO: consider merging with angular placement. + direction + + + + + A physical quality inhering in a bearer by virtue of the bearer's orientation in space. + thesaurus.maths:thesaurus.maths + + + + + + + + + A quality that is the extent of space between two entities. + quality + PATO:0000040 + + + + distance + + + + + A quality that is the extent of space between two entities. + PATOC:GVG + + + + + + + + quality + PATO:0000041 + obsolete absolutedistance + true + + + + + + + + quality + PATO:0000042 + obsolete relative distance + true + + + + + + + + + A quality of a physical entity inhering in a bearer by virtue of whether the bearer's molecules are being perceived by a taste and odorant receptors. + quality + PATO:0000043 + + + flavor + + + + + A quality of a physical entity inhering in a bearer by virtue of whether the bearer's molecules are being perceived by a taste and odorant receptors. + PATOC:GVG + + + + + + + + + A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time. + quality + PATO:0000044 + + + frequency + + + + + A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time. + Wikipedia:http://en.wikipedia.org/wiki/frequency + + + + + + + + quality + PATO:0000045 + obsolete absolute frequency + true + + + + + + + + quality + PATO:0000046 + obsolete relative frequency + true + + + + + + + + + An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved. + quality + PATO:0000047 + + biological sex + + + + + An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved. + MGED:MGED + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's resistance to pressure, being broken, or pierced + quality + impenetrability + toughness + PATO:0000048 + + + hardness + + + + + A physical quality inhering in a bearer by virtue of the bearer's resistance to pressure, being broken, or pierced + merriam-webster:merriam-webster + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's possessing or displaying a distinctive feature in type or degree or effect or force. + quality + PATO:0000049 + + + intensity + + + + + A quality inhering in a bearer by virtue of the bearer's possessing or displaying a distinctive feature in type or degree or effect or force. + PATOC:GVG + + + + + + + + + A time quality inhering in a bearer by virtue of the bearer's expected maximum age. + quality + PATO:0000050 + + life span + + + + + A time quality inhering in a bearer by virtue of the bearer's expected maximum age. + PATOC:GVG + + + + + + + + + A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. + quality + PATO:0000051 + + morphology + + + + + A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. + PATOC:GVG + + + + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). + PATO:0001647 + relational shape quality + quality + PATO:0000052 + + Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects. + shape + + + + + A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). + PATOC:GVG + + + + + + + + + + true + + + + + + + + quality + PATO:0000054 + obsolete absolute number + true + + + + + + + + quality + PATO:0000055 + obsolete relative number + true + + + + + + + + + An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth. + quality + nutritional quality + PATO:0000056 + + + trophic quality + + + + + An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth. + Wikipedia:http://en.wikipedia.org/wiki/Trophic_level + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurrence. + PATO:0000156 + PATO:0000158 + temporal + incidence + quality + PATO:0000057 + + + occurrence + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurrence. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's molecules being are aerially dispersed and perceived by an odorant receptor. + quality + PATO:0000058 + + odor + + + + + A physical quality inhering in a bearer by virtue of the bearer's molecules being are aerially dispersed and perceived by an odorant receptor. + PATOC:GVG + + + + + + + + A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a parent. + parental type + quality + PATO:0000059 + + obsolete parental quality + true + + + + + A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a parent. + WordNet:WordNet + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts. + PATO:0000132 + PATO:0001565 + distribution + quality + pattern + PATO:0000060 + + + spatial pattern + + + + + A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts. + PATOC:GVG + + + + + + + + quality + PATO:0000061 + obsolete relative pattern + true + + + + + + + + + A sleep quality defined by the mathematic properties of the relative time frames of the sleep cycle. + quality + PATO:0000062 + + sleep pattern + + + + + A sleep quality defined by the mathematic properties of the relative time frames of the sleep cycle. + PATOC:GVG + + + + + + + + quality + PATO:0000063 + obsolete percentage + true + + + + + + + + quality + PATO:0000064 + obsolete absolute percentage + true + + + + + + + + quality + PATO:0000065 + obsolete relative percentage + true + + + + + + + + + A texture quality inhering in a bearer by virtue of the bearer's having hair or bristles. + quality + PATO:0000066 + + + pilosity + + + + + A texture quality inhering in a bearer by virtue of the bearer's having hair or bristles. + PATOC:GVG + + + + + + + + quality + PATO:0000067 + obsolete relative pilosity + true + + + + + + + + + quality + PATO:0000068 + TODO: define this or obsolete it and move children somewhere else. + qualitative + + + + + + + + + A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. + quality + PATO:0000069 + + deviation(from_normal) + + + + + A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. + PATOC:GVG + + + + + + + + + + + + + + + The number of entities of this type that are part of the whole organism. + PATO:0000053 + PATO:0000071 + PATO:0001169 + PATO:0001226 + presence or absence in organism + quantitative + quality + count in organism + number + presence + PATO:0000070 + + This term was originally named "presence". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10. + amount + + + + + The number of entities of this type that are part of the whole organism. + PATOC:GVG + + + + + + + + + + true + + + + + + + + + + true + + + + + + + + quality + PATO:0000073 + obsolete relative_quality + true + + + + + + + + quality + PATO:0000074 + obsolete shattering + true + + + + + + + + quality + PATO:0000075 + obsolete threshability + true + + + + + + + + quality + PATO:0000076 + obsolete regulation + true + + + + + + + + + A quality inhering in a bearer by virtue of the whether the bearer's disposition to react to a stimulus or an agent. + quality + reactivity + response + responsivity + PATO:0000077 + + + + + response to + + + + + A quality inhering in a bearer by virtue of the whether the bearer's disposition to react to a stimulus or an agent. + PATOC:GVG + + + + + reactivity + GOC:CJM + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's movement or variation characterized by the regular recurrence or alternation of different quantities or conditions. + quality + PATO:0000078 + + rhythm quality + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's movement or variation characterized by the regular recurrence or alternation of different quantities or conditions. + answers.com:answers.com + + + + + + + + quality + PATO:0000079 + obsolete absolute rhythym + true + + + + + + + + + A physical quality of a process inhering in a bearer by virtue of the size of the bearer's maximum displacement from the 'normal' position, when periodic motion is taking place. + quality + PATO:0000080 + + amplitude + + + + + A physical quality of a process inhering in a bearer by virtue of the size of the bearer's maximum displacement from the 'normal' position, when periodic motion is taking place. + thesaurus.maths:thesaurus.maths + + + + + + + + + + true + + + + + + + + + A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm. + quality + PATO:0000082 + + persistence + + + + + A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm. + reference.com:reference.com + + + + + + + + + A quality that exists by virtue of being a particular point in the time of a cycle. + quality + PATO:0000083 + + phase + + + + + A quality that exists by virtue of being a particular point in the time of a cycle. + PATOC:GVG + + + + + + + + quality + PATO:0000084 + obsolete relative rhythym + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation. + sensitivity + quality + PATO:0000085 + + + + sensitivity toward + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation. + PATOC:GVG + + + + + + + + quality + PATO:0000086 + obsolete absolute sensitivity + true + + + + + + + + quality + PATO:0000087 + obsolete disease sensitivity + true + + + + + + + + quality + PATO:0000088 + obsolete absolute disease sensitivity + true + + + + + + + + quality + PATO:0000089 + obsolete relative disease sensitivity + true + + + + + + + + quality + PATO:0000090 + obsolete relative sensitivity + true + + + + + + + + quality + PATO:0000091 + obsolete stress sensitivity + true + + + + + + + + quality + PATO:0000092 + obsolete abiotic stress sensitivity + true + + + + + + + + quality + PATO:0000093 + obsolete chemical sensitivity + true + + + + + + + + quality + PATO:0000094 + obsolete drug sensitivity + true + + + + + + + + quality + PATO:0000095 + obsolete absolute drug sensitivity + true + + + + + + + + quality + PATO:0000096 + obsolete relative drug sensitivity + true + + + + + + + + quality + PATO:0000097 + obsolete herbicide sensitivity + true + + + + + + + + quality + PATO:0000098 + obsolete insecticide sensitivity + true + + + + + + + + quality + PATO:0000099 + obsolete plant growth hormone sensitivity + true + + + + + + + + quality + PATO:0000100 + obsolete soil composition sensitivity + true + + + + + + + + quality + PATO:0000101 + obsolete soil nutrient sensitivity + true + + + + + + + + quality + PATO:0000102 + obsolete macronutrient sensitivity + true + + + + + + + + quality + PATO:0000103 + obsolete micronutrient sensitivity + true + + + + + + + + quality + PATO:0000104 + obsolete osmotic response sensitivity + true + + + + + + + + quality + PATO:0000105 + obsolete p h sensitivity + true + + + + + + + + quality + PATO:0000106 + obsolete acid sensitivity + true + + + + + + + + quality + PATO:0000107 + obsolete alkali sensitivity + true + + + + + + + + quality + PATO:0000108 + obsolete salt sensitivity + true + + + + + + + + quality + PATO:0000109 + obsolete water sensitivity + true + + + + + + + + quality + PATO:0000110 + obsolete drought sensitivity + true + + + + + + + + quality + PATO:0000111 + obsolete flooding sensitivity + true + + + + + + + + quality + PATO:0000112 + obsolete humidity sensitivity + true + + + + + + + + quality + PATO:0000113 + obsolete radiation sensitivity + true + + + + + + + + quality + PATO:0000114 + obsolete temperature sensitivity + true + + + + + + + + quality + PATO:0000115 + obsolete absolute temperature sensitivity + true + + + + + + + + quality + PATO:0000116 + obsolete relative temperature sensitivity + true + + + + + + + + + A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. + quality + PATO:0000117 + + + size + + + + + A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. + WordNet:WordNet + + + + + + + + quality + PATO:0000118 + obsolete absolute size + true + + + + + + + + + A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension. + quality + PATO:0000119 + + + height + + + + + A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension. + PATOC:GVG + + + + + + + + quality + PATO:0000120 + obsolete absolute height + true + + + + + + + + quality + PATO:0000121 + obsolete relative height + true + + + + + + + + + A 1-D extent quality which is equal to the distance between two points. + quality + PATO:0000122 + + + + length + + + + + A 1-D extent quality which is equal to the distance between two points. + PATOC:GVG + + + + + + + + quality + PATO:0000123 + obsolete absolute length + true + + + + + + + + quality + PATO:0000124 + obsolete relative length + true + + + + + + + + + A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. + quality + PATO:0000125 + + + + mass + + + + + A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. + PATOC:GVG + + + + + + + + quality + PATO:0000126 + obsolete absolute mass + true + + + + + + + + quality + PATO:0000127 + obsolete relative mass + true + + + + + + + + + A physical quality inhering in a bearer that has mass near a gravitational body. + quality + PATO:0000128 + + + weight + + + + + A physical quality inhering in a bearer that has mass near a gravitational body. + Wikipedia:http://en.wikipedia.org/wiki/Weight + + + + + + + + quality + PATO:0000129 + obsolete absolute weight + true + + + + + + + + quality + PATO:0000130 + obsolete relative weight + true + + + + + + + + quality + PATO:0000131 + obsolete relative size + true + + + + + + + + + + true + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object. + PATO:0000137 + angular placement + quality + amount of rotation + angle + angular magnitude + plane angle + PATO:0000133 + + + orientation + + + + + A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object. + PATOC:JE + + + + + + + + quality + PATO:0000134 + obsolete absolute_angle + true + + + + + + + + quality + PATO:0000135 + obsolete relative_angle + true + + + + + + + + + A morphological quality pertaining to the degree to which an object contains an opening, aperture, orifice or vent. + quality + PATO:0000136 + + closure + + + + + A morphological quality pertaining to the degree to which an object contains an opening, aperture, orifice or vent. + PATOC:CJM + PATOC:GVG + + + + + + + + + + true + + + + + + + + quality + PATO:0000138 + obsolete absolute orientation + true + + + + + + + + quality + PATO:0000139 + obsolete relative orientation + true + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. + PATO:0001032 + PATO:0001631 + location + placement + relational spatial quality + quality + PATO:0000140 + + position + + + + + A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. + PATOC:GVG + + + + + + + + + A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form. + PATO:0001452 + conformation + relational structural quality + quality + PATO:0000141 + + structure + + + + + A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form. + PATOC:GVG + + + + + conformation + VT:1000738 + + + + + + + + quality + PATO:0000142 + obsolete substance + true + + + + + + + + quality + PATO:0000143 + obsolete addictive substance + true + + + + + + + + quality + PATO:0000144 + This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a solid; 'PATO:0001546' + obsolete solid substance + true + + + + + + + + quality + PATO:0000145 + This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a liquid; PATO:0001548 ' + obsolete liquid substance + true + + + + + + + + + A physical quality of the thermal energy of a system. + quality + PATO:0000146 + + + temperature + + + + + A physical quality of the thermal energy of a system. + PATOC:GVG + + + + + + + + quality + PATO:0000147 + obsolete absolute temperature + true + + + + + + + + quality + PATO:0000148 + obsolete body temperature + true + + + + + + + + quality + PATO:0000149 + obsolete relative temperature + true + + + + + + + + + A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics. + quality + PATO:0000150 + + texture + + + + + A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics. + PATOC:GVG + + + + + + + + quality + PATO:0000151 + obsolete relative texture + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's sensitivity towards a fixed location or value where a change is observed; upper limit. + quality + PATO:0000152 + + + + threshold + + + + + A quality inhering in a bearer by virtue of the bearer's sensitivity towards a fixed location or value where a change is observed; upper limit. + PATOC:GVG + + + + + + + + quality + PATO:0000153 + obsolete absolute threshold + true + + + + + + + + quality + PATO:0000154 + obsolete pain threshold + true + + + + + + + + quality + PATO:0000155 + obsolete relative threshold + true + + + + + + + + + + true + + + + + + + + quality + PATO:0000157 + obsolete absolute temporal + true + + + + + + + + + + true + + + + + + + + quality + PATO:0000159 + obsolete absolute incidence + true + + + + + + + + quality + PATO:0000160 + obsolete relative incidence + true + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time. + quality + PATO:0000161 + + + rate + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time. + PATOC:melissa + + + + + + + + quality + PATO:0000162 + obsolete absolute rate + true + + + + + + + + quality + PATO:0000163 + obsolete relative rate + true + + + + + + + + quality + PATO:0000164 + obsolete relative temporal + true + + + + + + + + + A quality in which events occur in sequence. + quality + PATO:0000165 + + + time + + + + + A quality in which events occur in sequence. + PATOC:GVG + + + + + + + + quality + PATO:0000166 + obsolete absolute time + true + + + + + + + + A limited, often assigned period of activity. + quality + PATO:0000167 + + obsolete bouts + true + + + + + A limited, often assigned period of activity. + answers.com:answers.com + + + + + + + + quality + PATO:0000168 + obsolete relative time + true + + + + + + + + + An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population. + quality + PATO:0000169 + + + viability + + + + + An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population. + PATOC:GVG + + + + + + + + quality + PATO:0000170 + obsolete yield + true + + + + + + + + quality + PATO:0000171 + obsolete absolute yield + true + + + + + + + + quality + PATO:0000172 + obsolete relative yield + true + + + + + + + + quality + PATO:0000173 + obsolete function + true + + + + + + + + quality + PATO:0000174 + obsolete autonomic function + true + + + + + + + + quality + PATO:0000175 + obsolete behavioral function + true + + + + + + + + quality + PATO:0000176 + obsolete metabolic function + true + + + + + + + + quality + PATO:0000177 + obsolete physiological function + true + + + + + + + + quality + PATO:0000178 + obsolete relative function + true + + + + + + + + quality + PATO:0000179 + obsolete body position + true + + + + + + + + quality + PATO:0000180 + obsolete body tone + true + + + + + + + + quality + PATO:0000181 + obsolete piloerection + true + + + + + + + + quality + PATO:0000182 + obsolete abdominal tone + true + + + + + + + + quality + PATO:0000183 + obsolete limb tone + true + + + + + + + + quality + PATO:0000184 + obsolete arousal + true + + + + + + + + + A behavioral quality inhering in a bearer by virtue of having physical steadiness. + quality + PATO:0000185 + + + balance + + + + + A behavioral quality inhering in a bearer by virtue of having physical steadiness. + thefreedictionary:thefreedictionary + + + + + + + + + An organismal quality inhering in a bearer by virtue of the bearer's behavior aggregate of the responses or reactions or movements in a given situation. + PATO:0001722 + behavioural quality + quality + PATO:0000186 + behavioral quality + + + + + An organismal quality inhering in a bearer by virtue of the bearer's behavior aggregate of the responses or reactions or movements in a given situation. + PATOC:GVG + + + + + + + + A relational quality of occurrent inhering in a bearer by virtue of the bearer's ability to consume a resource. + quality + propensity to consume + PATO:0000187 + + + Use GO:0007631 + obsolete consumption quality + true + + + + + A relational quality of occurrent inhering in a bearer by virtue of the bearer's ability to consume a resource. + PATOC:GVG + + + + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's having or lacking skillful and effective interaction of movement. + quality + PATO:0000188 + + + + coordination + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's having or lacking skillful and effective interaction of movement. + PATOC:GVG + + + + + + + + + A behavioral quality inhering in a bearer by virtue of whether the bearer's disposition to perceive differences between two or more stimuli. + quality + PATO:0000189 + + + + discrimination + + + + + A behavioral quality inhering in a bearer by virtue of whether the bearer's disposition to perceive differences between two or more stimuli. + PATOC:GVG + + + + + + + + quality + PATO:0000190 + obsolete gait + true + + + + + + + + quality + PATO:0000191 + obsolete learning_and memory + true + + + + + + + + quality + PATO:0000192 + obsolete locomotor_activity + true + + + + + + + + quality + PATO:0000193 + obsolete mating + true + + + + + + + + quality + PATO:0000194 + obsolete spontaneous_activity + true + + + + + + + + quality + PATO:0000195 + obsolete startle response + true + + + + + + + + quality + PATO:0000196 + obsolete vocalization + true + + + + + + + + quality + PATO:0000197 + obsolete transfer_arousal + true + + + + + + + + quality + PATO:0000198 + obsolete absolute consumption + true + + + + + + + + quality + PATO:0000199 + obsolete relative consumption + true + + + + + + + + quality + PATO:0000200 + obsolete learning + true + + + + + + + + quality + PATO:0000201 + obsolete memory + true + + + + + + + + quality + PATO:0000202 + obsolete long term memory + true + + + + + + + + quality + PATO:0000203 + obsolete short term memory + true + + + + + + + + quality + PATO:0000204 + obsolete absolute locomotor_activity + true + + + + + + + + quality + PATO:0000205 + obsolete relative locomotor_activity + true + + + + + + + + quality + PATO:0000206 + obsolete enzyme function + true + + + + + + + + quality + PATO:0000207 + obsolete circulatory function + true + + + + + + + + quality + PATO:0000208 + obsolete defensive function + true + + + + + + + + quality + PATO:0000209 + obsolete digestive function + true + + + + + + + + quality + PATO:0000210 + obsolete excretory function + true + + + + + + + + quality + PATO:0000211 + obsolete muscle function + true + + + + + + + + quality + PATO:0000212 + obsolete neural function + true + + + + + + + + quality + PATO:0000213 + obsolete neurobehavioral function + true + + + + + + + + quality + PATO:0000214 + obsolete reproductive function + true + + + + + + + + quality + PATO:0000215 + obsolete respiratory function + true + + + + + + + + quality + PATO:0000216 + obsolete heart rate + true + + + + + + + + quality + PATO:0000217 + obsolete immune function + true + + + + + + + + quality + PATO:0000218 + obsolete repair function + true + + + + + + + + quality + PATO:0000219 + obsolete healing + true + + + + + + + + quality + PATO:0000220 + obsolete regeneration + true + + + + + + + + quality + PATO:0000221 + obsolete urination + true + + + + + + + + quality + PATO:0000222 + obsolete muscle elevation + true + + + + + + + + quality + PATO:0000223 + obsolete muscle strength + true + + + + + + + + quality + PATO:0000224 + obsolete motor function + true + + + + + + + + quality + PATO:0000225 + obsolete sensory function + true + + + + + + + + quality + PATO:0000226 + obsolete tactile response + true + + + + + + + + quality + PATO:0000227 + obsolete motor performance + true + + + + + + + + quality + PATO:0000228 + obsolete auditory + true + + + + + + + + quality + PATO:0000229 + obsolete olfactory + true + + + + + + + + quality + PATO:0000230 + obsolete proprioreception + true + + + + + + + + quality + PATO:0000231 + obsolete reflex + true + + + + + + + + quality + PATO:0000232 + obsolete taste + true + + + + + + + + quality + PATO:0000233 + obsolete touch + true + + + + + + + + quality + PATO:0000234 + obsolete visual + true + + + + + + + + quality + PATO:0000235 + obsolete odor_acuity + true + + + + + + + + quality + PATO:0000236 + obsolete odor type + true + + + + + + + + quality + PATO:0000237 + obsolete absolute odor_acuity + true + + + + + + + + quality + PATO:0000238 + obsolete relative odor_acuity + true + + + + + + + + quality + PATO:0000239 + obsolete blinking reflex + true + + + + + + + + quality + PATO:0000240 + obsolete contact righting reflex + true + + + + + + + + quality + PATO:0000241 + obsolete corneal reflex + true + + + + + + + + quality + PATO:0000242 + obsolete flinch reflex + true + + + + + + + + quality + PATO:0000243 + obsolete lordosis reflex + true + + + + + + + + quality + PATO:0000244 + obsolete ocular reflex + true + + + + + + + + quality + PATO:0000245 + obsolete pinna reflex + true + + + + + + + + quality + PATO:0000246 + obsolete postural reflex + true + + + + + + + + quality + PATO:0000247 + obsolete proboscis extension reflex + true + + + + + + + + quality + PATO:0000248 + obsolete pupillary reflex + true + + + + + + + + quality + PATO:0000249 + obsolete righting reflex + true + + + + + + + + quality + PATO:0000250 + obsolete spinal reflex + true + + + + + + + + quality + PATO:0000251 + obsolete startle reflex + true + + + + + + + + quality + PATO:0000252 + obsolete suckling reflex + true + + + + + + + + quality + PATO:0000253 + obsolete swallowing reflex + true + + + + + + + + quality + PATO:0000254 + obsolete vibrissae reflex + true + + + + + + + + quality + PATO:0000255 + obsolete taste_acuity + true + + + + + + + + quality + PATO:0000256 + obsolete taste type + true + + + + + + + + quality + PATO:0000257 + obsolete absolute taste_acuity + true + + + + + + + + quality + PATO:0000258 + obsolete relative taste_acuity + true + + + + + + + + quality + PATO:0000259 + obsolete visual_ability + true + + + + + + + + quality + PATO:0000260 + obsolete visual_acuity + true + + + + + + + + + A quality of a single physical entity which is held by a bearer when the latter exhibits a state of growth, differentiation, or development. + quality + PATO:0000261 + + maturity + + + + + A quality of a single physical entity which is held by a bearer when the latter exhibits a state of growth, differentiation, or development. + Merriam-Webster:Merriam-Webster + + + + + + + + quality + PATO:0000262 + obsolete visual placing + true + + + + + + + + quality + PATO:0000263 + obsolete visual threshold + true + + + + + + + + quality + PATO:0000264 + obsolete absolute visual_ability + true + + + + + + + + quality + PATO:0000265 + obsolete relative visual_ability + true + + + + + + + + quality + PATO:0000266 + obsolete absolute visual_acuity + true + + + + + + + + quality + PATO:0000267 + obsolete relative visual_acuity + true + + + + + + + + quality + PATO:0000268 + obsolete absolute visual threshold + true + + + + + + + + quality + PATO:0000269 + obsolete relative visual threshold + true + + + + + + + + quality + PATO:0000270 + obsolete defecation + true + + + + + + + + quality + PATO:0000271 + obsolete prepulse inhibition + true + + + + + + + + quality + PATO:0000272 + obsolete relative neurobehavioral function + true + + + + + + + + + A reproductive quality inhering in an organism or population by virtue of the bearer's potential reproductive capacity ad measured by the number of gametes. + quality + PATO:0000273 + + + + fecundity + + + + + A reproductive quality inhering in an organism or population by virtue of the bearer's potential reproductive capacity ad measured by the number of gametes. + Wikipedia:http://en.wikipedia.org/wiki/Fecundity + + + + + + + + + A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction. + quality + PATO:0000274 + + + fertility + + + + + A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction. + PATOC:GVG + + + + + + + + quality + PATO:0000275 + obsolete gestational period + true + + + + + + + + + A reproductive quality inhering in the young of an animal by virtue of their number. + quality + litter size + PATO:0000276 + + + brood size + + + + + A reproductive quality inhering in the young of an animal by virtue of their number. + PATOC:GVG + + + + + + + + + A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction. + quality + PATO:0000277 + + + female fertility + + + + + A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction. + PATOC:GVG + + + + + + + + quality + PATO:0000278 + obsolete hybrid fertility + true + + + + + + + + + A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction. + quality + PATO:0000279 + + + male fertility + + + + + A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction. + PATOC:GVG + + + + + + + + quality + PATO:0000280 + obsolete backcross fertility + true + + + + + + + + quality + PATO:0000281 + obsolete cytoplasmic sterility + true + + + + + + + + quality + PATO:0000282 + obsolete f1 fertility + true + + + + + + + + quality + PATO:0000283 + obsolete f2 fertility + true + + + + + + + + quality + PATO:0000284 + obsolete germ line dependent fertility + true + + + + + + + + quality + PATO:0000285 + obsolete soma dependent fertility + true + + + + + + + + quality + PATO:0000286 + obsolete cytoplasmic male sterility + true + + + + + + + + quality + PATO:0000287 + obsolete absolute litter size + true + + + + + + + + quality + PATO:0000288 + obsolete relative litter size + true + + + + + + + + quality + PATO:0000289 + obsolete respiratory rate + true + + + + + + + + quality + PATO:0000290 + obsolete absolute respiratory rate + true + + + + + + + + quality + PATO:0000291 + obsolete relative respiratory rate + true + + + + + + + + quality + PATO:0000292 + obsolete mobility value + true + + + + + + + + quality + PATO:0000293 + obsolete absolute activity value + true + + + + + + + + quality + PATO:0000294 + obsolete process value + true + + + + + + + + quality + PATO:0000295 + obsolete relative activity value + true + + + + + + + + quality + PATO:0000296 + obsolete speed value + true + + + + + + + + + + A quality of a process which ends earlier than the natural end time or reference process. + PATO:0001508 + abolished + quality + incomplete + PATO:0000297 + + TODO: the definition is incorrect. See absent. + arrested + + + + + A quality of a process which ends earlier than the natural end time or reference process. + PATOC:LC + + + + + + + + quality + PATO:0000298 + obsolete not arrested value + true + + + + + + + + + + A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely. + + quality + PATO:0000299 + + + mobile + + + + + A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely. + PATOC:GVG + + + + + + + + + A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely. + + quality + fixed + PATO:0000300 + + + immobile + + + + + A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely. + PATOC:GVG + + + + + + + + quality + PATO:0000301 + obsolete absolute speed value + true + + + + + + + + quality + PATO:0000302 + obsolete relative speed value + true + + + + + + + + + + A speed which is relatively high. + + high speed + quality + fast speed + PATO:0000303 + + increased speed + + + + + A speed which is relatively high. + PATOC:GVG + + + + + + + + + + A speed which is relatively low. + + slow + slow speed + quality + PATO:0000304 + + decreased speed + + + + + A speed which is relatively low. + PATOC:GVG + + + + + + + + quality + PATO:0000305 + obsolete age value + true + + + + + + + + quality + PATO:0000306 + obsolete absolute age value + true + + + + + + + + quality + PATO:0000307 + obsolete relative age value + true + + + + + + + + + An age which is relatively high. + + quality + PATO:0000308 + + old + + + + + An age which is relatively high. + PATOC:GVG + + + + + + + + + An age which is relatively low. + + quality + PATO:0000309 + + young + + + + + An age which is relatively low. + PATOC:GVG + + + + + + + + quality + PATO:0000310 + obsolete color value + true + + + + + + + + quality + PATO:0000311 + obsolete color hue value + true + + + + + + + + quality + PATO:0000312 + obsolete color intensity value + true + + + + + + + + quality + PATO:0000313 + obsolete color saturation value + true + + + + + + + + quality + PATO:0000314 + obsolete flourescence value + true + + + + + + + + quality + PATO:0000315 + obsolete color pattern value + true + + + + + + + + quality + PATO:0000316 + obsolete relative color value + true + + + + + + + + + A color that lacks any hues as parts. + quality + PATO:0000317 + + + black + + + + + A color that lacks any hues as parts. + PATOC:GVG + + + + + + + + + A color hue with low wavelength of that portion of the visible spectrum lying between green and indigo, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 490 nanometers. + quality + PATO:0000318 + + + blue + + + + + A color hue with low wavelength of that portion of the visible spectrum lying between green and indigo, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 490 nanometers. + Dictionary:http://dictionary.reference.com/ + + + + + + + + + A color consisting of green and blue hue. + quality + PATO:0000319 + + cyan + + + + + A color consisting of green and blue hue. + PATOC:GVG + + + + + + + + + A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers. + quality + PATO:0000320 + + + green + + + + + A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers. + Dictionary:http://dictionary.reference.com/ + + + + + + + + + A color consisting of red and blue hues. + quality + PATO:0000321 + + + magenta + + + + + A color consisting of red and blue hues. + Wikipedia:http://en.wikipedia.org/wiki/Magenta + + + + + + + + + A color hue with high wavelength of the long-wave end of the visible spectrum, evoked in the human observer by radiant energy with wavelengths of approximately 630 to 750 nanometers. + quality + PATO:0000322 + + + red + + + + + A color hue with high wavelength of the long-wave end of the visible spectrum, evoked in the human observer by radiant energy with wavelengths of approximately 630 to 750 nanometers. + Dictionary:http://dictionary.reference.com/ + + + + + + + + + An achromatic color of maximum brightness; the color of objects that reflect nearly all light of all visible wavelengths. + quality + whitish + PATO:0000323 + + + white + + + + + An achromatic color of maximum brightness; the color of objects that reflect nearly all light of all visible wavelengths. + Dictionary:http://dictionary.reference.com/ + + + + + + + + + A color hue with medium wavelength of that portion of the visible spectrum lying between orange and green, evoked in the human observer by radiant energy with wavelengths of approximately 570 to 590 nanometers. + quality + PATO:0000324 + + + yellow + + + + + A color hue with medium wavelength of that portion of the visible spectrum lying between orange and green, evoked in the human observer by radiant energy with wavelengths of approximately 570 to 590 nanometers. + Dictionary:http://dictionary.reference.com/ + + + + + + + + quality + PATO:0000325 + obsolete bright + true + + + + + + + + quality + PATO:0000326 + obsolete dim + true + + + + + + + + + A color brightness which is relatively low. + + dark + quality + PATO:0000327 + + low brightness + + + + + A color brightness which is relatively low. + PATOC:MAH + + + + + + + + + A color saturation which is of low purity. + + pale + quality + dull + PATO:0000328 + + low saturation + + + + + A color saturation which is of low purity. + PATOC:MAH + + + + + + + + + A color pattern inhering in a bearer by virtue of bearer's being marked with irregularly shaped spots or blots of a different hue or degree of saturation. + blotched + quality + PATO:0000329 + + blotchy + + + + + A color pattern inhering in a bearer by virtue of bearer's being marked with irregularly shaped spots or blots of a different hue or degree of saturation. + Dictionary.com:Dictionary.com + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency. + + quality + PATO:0000330 + + + + irregular spatial pattern + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency. + PATOC:GVG + + + + + + + + + A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color. + + quality + PATO:0000331 + + discolored + + + + + A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color. + Dictionary.com:Dictionary.com + + + + + + + + + + true + + + + + + + + + A color pattern inhering in a bearer by virtue of bearer's being marked with a round area of different hue or degree of saturation. + quality + PATO:0000333 + + spotted + + + + + A color pattern inhering in a bearer by virtue of bearer's being marked with a round area of different hue or degree of saturation. + PATOC:GVG + + + + + + + + + + true + + + + + + + + quality + mottled (sensu Drosophila) + PATO:0000335 + obsolete variegated + true + + + + + + + + + A color quality inhering in a bearer by virtue of the bearer's having color. + + PATO:0000332 + quality + pigmented + PATO:0000336 + + colored + + + + + A color quality inhering in a bearer by virtue of the bearer's having color. + PATOC:GVG + + + + + + + + + A color quality inhering in a bearer by virtue of the bearer's lacking color. + PATO:0000334 + quality + unpigmented + PATO:0000337 + + colorless + + + + + A color quality inhering in a bearer by virtue of the bearer's lacking color. + PATOC:GVG + + + + + + + + quality + PATO:0000338 + obsolete compatability value + true + + + + + + + + quality + PATO:0000339 + obsolete gametophytic compatability value + true + + + + + + + + quality + PATO:0000340 + obsolete relative compatability value + true + + + + + + + + quality + PATO:0000341 + obsolete sporophytic compatability value + true + + + + + + + + quality + PATO:0000342 + obsolete gametophyte compatible value + true + + + + + + + + quality + PATO:0000343 + obsolete gametophyte incompatible value + true + + + + + + + + + + A compatibility quality inhering in a bearer by virtue of the bearer's being capable of harmonious coexistence. + + quality + PATO:0000344 + + + + compatible + + + + + A compatibility quality inhering in a bearer by virtue of the bearer's being capable of harmonious coexistence. + PATOC:GVG + + + + + + + + + A compatibility quality inhering in a bearer by virtue of the bearer's being incapable of harmonious coexistence. + + quality + PATO:0000345 + + + + incompatible + + + + + A compatibility quality inhering in a bearer by virtue of the bearer's being incapable of harmonious coexistence. + PATOC:GVG + + + + + + + + quality + PATO:0000346 + obsolete sporophyte compatible value + true + + + + + + + + quality + PATO:0000347 + obsolete sporophyte incompatible value + true + + + + + + + + quality + PATO:0000348 + obsolete composition value + true + + + + + + + + quality + PATO:0000349 + obsolete carbohydrate composition value + true + + + + + + + + quality + PATO:0000350 + obsolete electrolyte composition value + true + + + + + + + + quality + PATO:0000351 + obsolete macromolecular composition value + true + + + + + + + + quality + PATO:0000352 + obsolete metabolite composition value + true + + + + + + + + quality + PATO:0000353 + obsolete secondary product composition value + true + + + + + + + + quality + PATO:0000354 + obsolete protein composition value + true + + + + + + + + quality + PATO:0000355 + obsolete enzyme composition value + true + + + + + + + + quality + PATO:0000356 + obsolete concentration value + true + + + + + + + + quality + PATO:0000357 + obsolete protein concentration value + true + + + + + + + + quality + PATO:0000358 + obsolete sugar concentration value + true + + + + + + + + quality + PATO:0000359 + obsolete water content value + true + + + + + + + + quality + PATO:0000360 + obsolete consistency value + true + + + + + + + + quality + PATO:0000361 + obsolete gel consistency value + true + + + + + + + + quality + PATO:0000362 + obsolete direction value + true + + + + + + + + quality + PATO:0000363 + obsolete away + true + + + + + + + + quality + PATO:0000364 + obsolete bi-directional + true + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point. + + quality + PATO:0000365 + + down + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point. + PATOC:GVG + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces east. + quality + PATO:0000366 + + left + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces east. + PATOC:GVG + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces west. + quality + PATO:0000367 + + right + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces west. + PATOC:GVG + + + + + + + + quality + PATO:0000368 + obsolete towards1 + true + + + + + + + + quality + PATO:0000369 + obsolete unidirectional + true + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point. + + quality + PATO:0000370 + + up + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point. + PATOC:GVG + + + + + + + + quality + PATO:0000371 + obsolete distance value + true + + + + + + + + quality + PATO:0000372 + obsolete absolute distance value + true + + + + + + + + quality + PATO:0000373 + obsolete relative distance value + true + + + + + + + + + + A distance which is greater relative to the normal or average. + + quality + long distance + PATO:0000374 + + + increased distance + + + + + A distance which is greater relative to the normal or average. + PATOC:GVG + + + + + + + + + + A distance which is lesser relative to the normal or average. + + quality + short distance + PATO:0000375 + + + decreased distance + + + + + A distance which is lesser relative to the normal or average. + PATOC:GVG + + + + + + + + quality + PATO:0000376 + obsolete flavor value + true + + + + + + + + quality + PATO:0000377 + obsolete frequency value + true + + + + + + + + quality + PATO:0000378 + obsolete absolute frequency value + true + + + + + + + + quality + PATO:0000379 + obsolete relative frequency value + true + + + + + + + + + + A frequency which is relatively high. + + high frequency + quality + frequent + PATO:0000380 + + + increased frequency + + + + + A frequency which is relatively high. + PATOC:GVG + + + + + + + + + + A frequency which is relatively low. + + low frequency + quality + infrequent + PATO:0000381 + + + decreased frequency + + + + + A frequency which is relatively low. + PATOC:GVG + + + + + + + + quality + PATO:0000382 + obsolete gender value + true + + + + + + + + + A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes. + quality + PATO:0000383 + + + female + + + + + A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes. + MGED:MGED + + + + + + + + + A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes. + quality + PATO:0000384 + + + male + + + + + A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes. + MGED:MGED + + + + + + + + quality + PATO:0000385 + obsolete hardness value + true + + + + + + + + + + A hardness quality of being rigid and resistant to pressure. + + quality + firm + impenetrable + tough + PATO:0000386 + + + + hard + + + + + A hardness quality of being rigid and resistant to pressure. + PATOC:GVG + + + + + + + + + + A hardness quality of giving little resistance to pressure. + + quality + PATO:0000387 + + + + soft + + + + + A hardness quality of giving little resistance to pressure. + PATOC:GVG + + + + + + + + quality + PATO:0000388 + obsolete intensity value + true + + + + + + + + + A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course. + + quality + PATO:0000389 + + + + acute + + + + + A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course. + dictionary:reference + + + + + + + + quality + PATO:0000390 + obsolete extreme + true + + + + + + + + quality + PATO:0000391 + obsolete intense + true + + + + + + + + quality + PATO:0000392 + obsolete limited + true + + + + + + + + quality + PATO:0000393 + obsolete maximal + true + + + + + + + + + An intensity which is less than moderate in type or degree or effect or force. + quality + PATO:0000394 + + + + mild intensity + + + + + An intensity which is less than moderate in type or degree or effect or force. + PATOC:GVG + + + + + + + + + An intensity which is less than extreme in type or degree or effect or force. + quality + PATO:0000395 + + + + moderate intensity + + + + + An intensity which is less than extreme in type or degree or effect or force. + Merriam-Webster:Merriam-Webster + + + + + + + + + An intensity which is extremely bad or unpleasant in type or degree or effect or force. + quality + PATO:0000396 + + + + severe intensity + + + + + An intensity which is extremely bad or unpleasant in type or degree or effect or force. + WordNet:WordNet + + + + + + + + quality + PATO:0000397 + + obsolete slight + true + + + + + + + + quality + PATO:0000398 + obsolete vigorous + true + + + + + + + + quality + PATO:0000399 + obsolete life span value + true + + + + + + + + quality + PATO:0000400 + obsolete morphology value + true + + + + + + + + quality + PATO:0000401 + obsolete shape value + true + + + + + + + + + + A branchiness quality inhering in a bearer by virtue of the bearer's having branches. + + ramified + ramiform + quality + PATO:0000402 + + + + branched + + + + + A branchiness quality inhering in a bearer by virtue of the bearer's having branches. + WordNet:WordNet + + + + + + + + + A concave quality inhering in a bearer by virtue of the bearer's resembling a groove or fissure. + quality + PATO:0000403 + + + + cleft + + + + + A concave quality inhering in a bearer by virtue of the bearer's resembling a groove or fissure. + WordNet:WordNet + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals). + + PATO:0001363 + spiral + quality + helical + helicoid + helicoidal + helix-shaped + PATO:0000404 + + + + coiled + + + + + A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals). + WordNet:WordNet + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having parallel chains in undulate fashion on the border. + quality + PATO:0000405 + + + + curled + + + + + A shape quality inhering in a bearer by virtue of the bearer's having parallel chains in undulate fashion on the border. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend. + bowing + quality + curled + PATO:0000406 + + + curved + + + + + A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend. + WordNet:WordNet + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having a horizontal surface without a slope, tilt, or curvature. + quality + plate-like + PATO:0000407 + + + + flat + + + + + A quality inhering in a bearer by virtue of the bearer's having a horizontal surface without a slope, tilt, or curvature. + web:http://www.merriam-webster.com/ + + + + + + + + + + true + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting an equatorial diameter greater than its polar diameter. + oblate spheroid + quality + PATO:0000409 + + + + oblate + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting an equatorial diameter greater than its polar diameter. + WordNet:WordNet + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having leaflets or leaflets-like structures on each side of a common axis. + quality + feather-like + of a leaf shape + PATO:0000410 + + + + pinnate + + + + + A shape quality inhering in a bearer by virtue of the bearer's having leaflets or leaflets-like structures on each side of a common axis. + WordNet:WordNet + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center. + quality + round + rounded + PATO:0000411 + + + + circular + + + + + A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + true + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having an equal-sided rectangular form. + quality + PATO:0000413 + + + square + + + + + A shape quality inhering in a bearer by virtue of the bearer's having an equal-sided rectangular form. + answers.com:answers.com + + + + + + + + + A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches. + + quality + PATO:0000414 + + + + unbranched + + + + + A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals). + + quality + PATO:0000415 + + + + uncoiled + + + + + A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals). + WordNet:WordNet + + + + + + + + quality + PATO:0000416 + obsolete count value + true + + + + + + + + quality + PATO:0000417 + obsolete absolute number value + true + + + + + + + + quality + PATO:0000418 + obsolete relative number value + true + + + + + + + + + + true + + + + + + + + + + true + + + + + + + + quality + PATO:0000421 + obsolete nutritional value + true + + + + + + + + + A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth. + + quality + PATO:0000422 + + + auxotrophic + + + + + A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth. + Wikipedia:http://en.wikipedia.org/wiki/Auxotrophic + + + + + + + + + A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth. + + quality + PATO:0000423 + + + prototrophic + + + + + A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth. + Wikipedia:http://en.wikipedia.org/wiki/Prototrophic + + + + + + + + quality + PATO:0000424 + obsolete occurence value + true + + + + + + + + quality + PATO:0000425 + + obsolete continual + true + + + + + + + + + + true + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly. + + quality + PATO:0000427 + + + + recurrent + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances. + + quality + PATO:0000428 + + + + sporadic + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances. + PATO:MAH + WordNet:WordNet + + + + + + + + + + true + + + + + + + + quality + PATO:0000430 + obsolete unique + true + + + + + + + + quality + PATO:0000431 + obsolete odor value + true + + + + + + + + quality + PATO:0000432 + obsolete parental type value + true + + + + + + + + A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a father. + quality + PATO:0000433 + + obsolete paternal + true + + + + + A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a father. + WordNet:WordNet + + + + + + + + A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a mother. + quality + PATO:0000434 + + obsolete maternal + true + + + + + A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a mother. + WordNet:WordNet + + + + + + + + quality + PATO:0000435 + obsolete pattern value + true + + + + + + + + quality + PATO:0000436 + obsolete concrete + true + + + + + + + + quality + PATO:0000437 + obsolete sleep pattern value + true + + + + + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation. + + uniform + quality + constant + PATO:0000438 + + invariant + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation. + Dictionary:http://dictionary.reference.com/ + + + + + + + + quality + PATO:0000439 + obsolete perseverative + true + + + + + + + + + A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement. + + quality + PATO:0000440 + + + + regular spatial pattern + + + + + A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement. + PATOC:GVG + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's marked by tedious repetition. + quality + PATO:0000441 + + repetitive + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's marked by tedious repetition. + thefreedictionary.com:thefreedictionary.com + + + + + + + + A sleep pattern quality inhering in a bearer by virtue of the bearer's inability to sleep. + quality + PATO:0000442 + + + Consider NBO:0000422. + obsolete insomnia + true + + + + + A sleep pattern quality inhering in a bearer by virtue of the bearer's inability to sleep. + WordNet:WordNet + + + + + + + + A sleep pattern quality inhering in a bearer by virtue of the bearer's disrupted sleep during normal sleeping period; often accompanied by cataplexy, sleep paralysis. + quality + PATO:0000443 + + + Consider NBO:0000423 + obsolete narcolepsy + true + + + + + + + + quality + PATO:0000444 + obsolete percentage value + true + + + + + + + + quality + PATO:0000445 + obsolete relative percentage value + true + + + + + + + + quality + PATO:0000446 + obsolete absolute percentage value + true + + + + + + + + quality + PATO:0000447 + obsolete decreased percentage + true + + + + + + + + quality + PATO:0000448 + obsolete high percentage + true + + + + + + + + quality + PATO:0000449 + obsolete increased percentage + true + + + + + + + + quality + PATO:0000450 + obsolete low percentage + true + + + + + + + + quality + PATO:0000451 + obsolete pilosity value + true + + + + + + + + quality + PATO:0000452 + obsolete relative pilosity value + true + + + + + + + + + + A pilosity quality inhering in a bearer by virtue of the bearer's lack of hairs or bristles. + quality + hairless + PATO:0000453 + + + glabrous + + + + + A pilosity quality inhering in a bearer by virtue of the bearer's lack of hairs or bristles. + PATOC:CJM + PATOC:GVG + + + + + + + + + A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections. + quality + PATO:0000454 + + + hairy + + + + + A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections. + PATOC:GVG + + + + + + + + + A maturity quality inhering in a bearer by virtue of the bearer's having arrived at the onset of puberty (the age at which sex glands become functional) but not yet fully mature. + quality + PATO:0000455 + + pubescent + + + + + A maturity quality inhering in a bearer by virtue of the bearer's having arrived at the onset of puberty (the age at which sex glands become functional) but not yet fully mature. + WordNet:WordNet + + + + + + + + quality + PATO:0000456 + obsolete abstract + true + + + + + + + + quality + PATO:0000457 + obsolete deviation(from_normal) value + true + + + + + + + + quality + PATO:0000458 + obsolete presence value + true + + + + + + + + quality + PATO:0000459 + obsolete relative quantity value + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's deviation from normal or average. + + quality + aberrant + atypia + atypical + defective + PATO:0000460 + + + + abnormal + + + + + A quality inhering in a bearer by virtue of the bearer's deviation from normal or average. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average. + + quality + average + PATO:0000461 + + + + normal + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average. + PATOC:GVG + + + + + + + + + + + + + + + + + + + + + + A quality denoting the lack of an entity. + + PATO:0001996 + absence + absent from organism + quality + PATO:0000462 + + + + See documentation here: http://code.google.com/p/phenotype-ontologies/wiki/ModelingOfAbsence + absent + + + + + A quality denoting the lack of an entity. + thefreedictionary.:thefreedictionary. + + + + + + + + + A quality inhering in a bearer by virtue of being clearly visible. + + quality + distinct + PATO:0000463 + + + conspicuous + + + + + A quality inhering in a bearer by virtue of being clearly visible. + thefreedictionary:thefreedictionary + + + + + + + + + A quality inhering in a bearer by virtue of not being clearly visible. + + quality + faint + PATO:0000464 + + + inconspicuous + + + + + A quality inhering in a bearer by virtue of not being clearly visible. + thefreedictionary:thefreedictionary + + + + + + + + quality + PATO:0000465 + obsolete marked + true + + + + + + + + quality + PATO:0000466 + obsolete none + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's existence. + + quality + present in organism + PATO:0000467 + + + present + + + + + A quality inhering in a bearer by virtue of the bearer's existence. + PATOC:GVG + + + + + + + + + + true + + + + + + + + quality + PATO:0000469 + obsolete high + true + + + + + + + + + + An amount which is relatively high. + + PATO:0000420 + PATO:0000650 + increased number + present in greater numbers in organism + supernumerary + quality + accessory + increased + PATO:0000470 + + increased amount + + + + + An amount which is relatively high. + PATOC:GVG + + + + + + + + quality + PATO:0000471 + obsolete low + true + + + + + + + + quality + PATO:0000472 + obsolete quality value + true + + + + + + + + quality + PATO:0000473 + obsolete relative_quality value + true + + + + + + + + quality + PATO:0000474 + obsolete shattering value + true + + + + + + + + quality + PATO:0000475 + obsolete threshability value + true + + + + + + + + quality + PATO:0000476 + obsolete bad value + true + + + + + + + + quality + PATO:0000477 + obsolete good value + true + + + + + + + + quality + PATO:0000478 + obsolete poor value + true + + + + + + + + quality + PATO:0000479 + obsolete regulation value + true + + + + + + + + quality + PATO:0000480 + obsolete positive regulation + true + + + + + + + + quality + PATO:0000481 + obsolete negative regulation + true + + + + + + + + quality + PATO:0000482 + obsolete response value + true + + + + + + + + quality + PATO:0000483 + obsolete tactile hyperresponsive + true + + + + + + + + quality + PATO:0000484 + obsolete tactile hyporesponsive + true + + + + + + + + quality + PATO:0000485 + obsolete mild response + true + + + + + + + + quality + PATO:0000486 + obsolete moderate response + true + + + + + + + + + + A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent. + + responsive + quality + PATO:0000487 + + + + responsive to + + + + + A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent. + PATOC:GVG + + + + + + + + + A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent. + + unresponsive + quality + PATO:0000488 + + + + unresponsive to + + + + + A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent. + PATOC:GVG + + + + + + + + quality + PATO:0000489 + obsolete vigorous response + true + + + + + + + + quality + PATO:0000490 + obsolete rhythym value + true + + + + + + + + quality + PATO:0000491 + obsolete sensitivity value + true + + + + + + + + quality + PATO:0000492 + obsolete absolute rhythym value + true + + + + + + + + quality + PATO:0000493 + obsolete amplitude value + true + + + + + + + + quality + PATO:0000494 + obsolete period value + true + + + + + + + + quality + PATO:0000495 + obsolete persistence value + true + + + + + + + + quality + PATO:0000496 + obsolete phase value + true + + + + + + + + quality + PATO:0000497 + obsolete relative rhythym value + true + + + + + + + + + + A duration quality of a process which is relatively high. + + PATO:0000715 + high time + increased period + increased time + quality + chronic + prolonged period + slow time + PATO:0000498 + + increased duration + + + + + A duration quality of a process which is relatively high. + PATOC:GVG + + + + + + + + + + A duration quality of a process which is relatively low. + + PATO:0000716 + decreased period + decreased time + low period + shortened period + quality + fast time + PATO:0000499 + + decreased duration + + + + + A duration quality of a process which is relatively low. + PATOC:GVG + + + + + + + + + A phase which occurs earlier than the natural start time. + quality + PATO:0000500 + + advanced phase + + + + + A phase which occurs earlier than the natural start time. + PATOC:GVG + + + + + + + + + A phase which occurs during dark cycle. + quality + PATO:0000501 + + dark phase + + + + + A phase which occurs during dark cycle. + PATOC:GVG + + + + + + + + + A quality of a process which starts later than the natural start time or the reference process. + quality + late + PATO:0000502 + + delayed + + + + + A quality of a process which starts later than the natural start time or the reference process. + PATOC:LC + + + + + + + + + A phase which occurs during the light cycle. + quality + PATO:0000503 + + light phase + + + + + A phase which occurs during the light cycle. + PATOC:GVG + + + + + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm. + + quality + PATO:0000504 + + arrhythmic + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm. + PATOC:GVG + + + + + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm. + + quality + PATO:0000505 + + rhythmic + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm. + PATOC:GVG + + + + + + + + quality + PATO:0000506 + obsolete absolute sensitivity value + true + + + + + + + + quality + PATO:0000507 + obsolete disease sensitivity value + true + + + + + + + + quality + PATO:0000508 + obsolete relative sensitivity value + true + + + + + + + + quality + PATO:0000509 + obsolete stress sensitivity value + true + + + + + + + + quality + PATO:0000510 + obsolete temperature sensitivity value + true + + + + + + + + quality + PATO:0000511 + obsolete absolute disease sensitivity value + true + + + + + + + + quality + PATO:0000512 + obsolete relative disease sensitivity value + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus. + + insensitive + quality + resistant + PATO:0000513 + + + + insensitive toward + + + + + A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus. + PATOC:GVG + + + + + + + + quality + PATO:0000514 + obsolete intolerant value + true + + + + + + + + + + A resistance quality inhering in a bearer by virtue of its disposition to endure or being insensitive to a stimulus. + tolerant + quality + PATO:0000515 + + + + tolerant to + + + + + A resistance quality inhering in a bearer by virtue of its disposition to endure or being insensitive to a stimulus. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having sensitivity toward an external stimulus. + + sensitive + quality + PATO:0000516 + + + + sensitive toward + + + + + A quality inhering in a bearer by virtue of the bearer's having sensitivity toward an external stimulus. + PATOC:GVG + + + + + + + + quality + PATO:0000517 + obsolete abiotic stress sensitivity value + true + + + + + + + + quality + PATO:0000518 + obsolete chemical sensitivity value + true + + + + + + + + quality + PATO:0000519 + obsolete humidity sensitivity value + true + + + + + + + + quality + PATO:0000520 + obsolete radiation sensitivity value + true + + + + + + + + quality + PATO:0000521 + obsolete drug sensitivity value + true + + + + + + + + quality + PATO:0000522 + obsolete herbicide sensitivity value + true + + + + + + + + quality + PATO:0000523 + obsolete insecticide sensitivity value + true + + + + + + + + quality + PATO:0000524 + obsolete plant growth hormone sensitivity value + true + + + + + + + + quality + PATO:0000525 + obsolete soil composition sensitivity value + true + + + + + + + + quality + PATO:0000526 + obsolete absolute drug sensitivity value + true + + + + + + + + quality + PATO:0000527 + obsolete relative drug sensitivity value + true + + + + + + + + quality + PATO:0000528 + obsolete drug insensitive + true + + + + + + + + quality + PATO:0000529 + obsolete drug sensitive + true + + + + + + + + quality + PATO:0000530 + obsolete soil nutrient sensitivity value + true + + + + + + + + quality + PATO:0000531 + obsolete macronutrient sensitivity value + true + + + + + + + + quality + PATO:0000532 + obsolete micronutrient sensitivity value + true + + + + + + + + quality + PATO:0000533 + obsolete osmotic response sensitivity + true + + + + + + + + quality + PATO:0000534 + obsolete p h sensitivity value + true + + + + + + + + quality + PATO:0000535 + obsolete salt sensitivity value + true + + + + + + + + quality + PATO:0000536 + obsolete water sensitivity value + true + + + + + + + + quality + PATO:0000537 + obsolete acid sensitivity value + true + + + + + + + + quality + PATO:0000538 + obsolete alkali sensitivity value + true + + + + + + + + quality + PATO:0000539 + obsolete drought sensitivity value + true + + + + + + + + quality + PATO:0000540 + obsolete flooding sensitivity value + true + + + + + + + + quality + PATO:0000541 + obsolete photosensitivity value + true + + + + + + + + quality + PATO:0000542 + obsolete absolute photosensitivity value + true + + + + + + + + quality + PATO:0000543 + obsolete light intensivity sensitivity value + true + + + + + + + + quality + PATO:0000544 + obsolete light_quality sensitivity value + true + + + + + + + + quality + PATO:0000545 + obsolete relative photosensitivity value + true + + + + + + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity. + + quality + photoresistant + PATO:0000546 + + + photoinsensitive + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity. + PATOC:GVG + + + + + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's exhibiting photosensitivity. + + quality + PATO:0000547 + + + photosensitive + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's exhibiting photosensitivity. + PATOC:GVG + + + + + + + + quality + PATO:0000548 + obsolete blue light sensitivity value + true + + + + + + + + quality + PATO:0000549 + obsolete far red light sensitivity value + true + + + + + + + + quality + PATO:0000550 + obsolete red light sensitivity value + true + + + + + + + + quality + PATO:0000551 + obsolete u v light sensitivity value + true + + + + + + + + quality + PATO:0000552 + obsolete absolute temperature sensitivity value + true + + + + + + + + quality + PATO:0000553 + obsolete relative temperature sensitivity value + true + + + + + + + + quality + PATO:0000554 + obsolete cold sensitive + true + + + + + + + + quality + PATO:0000555 + obsolete heat sensitive + true + + + + + + + + quality + thermoresistant + PATO:0000556 + obsolete thermoinsensitive + true + + + + + + + + quality + PATO:0000557 + obsolete thermosensitive + true + + + + + + + + quality + PATO:0000558 + obsolete size value + true + + + + + + + + quality + PATO:0000559 + obsolete absolute size value + true + + + + + + + + quality + PATO:0000560 + obsolete height value + true + + + + + + + + quality + PATO:0000561 + obsolete length value + true + + + + + + + + quality + PATO:0000562 + obsolete mass value + true + + + + + + + + quality + PATO:0000563 + obsolete relative size value + true + + + + + + + + quality + PATO:0000564 + obsolete thickness value + true + + + + + + + + quality + PATO:0000565 + obsolete volume value + true + + + + + + + + quality + :breadth + PATO:0000566 + obsolete width value + true + + + + + + + + quality + PATO:0000567 + obsolete absolute height value + true + + + + + + + + quality + PATO:0000568 + obsolete relative height value + true + + + + + + + + + + A height which is relatively low. + + quality + short + PATO:0000569 + + decreased height + + + + + A height which is relatively low. + PATOC:GVG + + + + + + + + + + A height which is relatively high. + + quality + tall + PATO:0000570 + + increased height + + + + + A height which is relatively high. + PATOC:GVG + + + + + + + + quality + PATO:0000571 + obsolete absolute length value + true + + + + + + + + quality + PATO:0000572 + obsolete relative length value + true + + + + + + + + + + A length quality which is relatively large. + + long + quality + PATO:0000573 + + increased length + + + + + A length quality which is relatively large. + PATOC:GVG + + + + + + + + + + A length quality which is relatively small. + + short + quality + shortened + stubby + PATO:0000574 + + decreased length + + + + + A length quality which is relatively small. + PATOC:GVG + + + + + + + + quality + PATO:0000575 + obsolete absolute mass value + true + + + + + + + + quality + PATO:0000576 + obsolete relative mass value + true + + + + + + + + quality + PATO:0000577 + obsolete weight value + true + + + + + + + + + + true + + + + + + + + + + true + + + + + + + + quality + PATO:0000580 + obsolete absolute weight value + true + + + + + + + + quality + PATO:0000581 + obsolete relative weight value + true + + + + + + + + + + A weight which is relatively high. + + heavy + high weight + quality + PATO:0000582 + + increased weight + + + + + A weight which is relatively high. + PATOC:GVG + + + + + + + + + + A weight which is relatively low. + + light weight + low weight + quality + PATO:0000583 + + decreased weight + + + + + A weight which is relatively low. + PATOC:GVG + + + + + + + + + An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ). + + hypertrophy + quality + PATO:0000584 + + + hypertrophic + + + + + An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ). + PATOC:MAH + + + + + + + + + A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ). + + PATO:0000412 + shrunken + quality + PATO:0000585 + + + hypotrophic + + + + + A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ). + PATOC:MAH + + + + + + + + + + A size quality which is relatively high. + + PATO:0001202 + quality + big + enlarged + expanded + great + large + PATO:0000586 + + increased size + + + + + A size quality which is relatively high. + PATOC:GVG + + + + + + + + + + A size quality which is relatively low. + + hypoplasia + underdeveloped + quality + reduced + small + tiny + PATO:0000587 + + decreased size + + + + + A size quality which is relatively low. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being a remnant structure from earlier development or evolution. + quality + PATO:0000588 + + May be part of an animal (such as an organ or bone) that is no longer used by the species and has therefore become smaller or less developed. + vestigial + + + + + A quality inhering in a bearer by virtue of the bearer's being a remnant structure from earlier development or evolution. + PATOC:MAH + + + + + + + + quality + PATO:0000589 + obsolete absolute thickness value + true + + + + + + + + quality + PATO:0000590 + obsolete relative thickness value + true + + + + + + + + + + A thickness which is relatively high. + + high thickness + stout + thickened + quality + thick + PATO:0000591 + + + increased thickness + + + + + A thickness which is relatively high. + PATOC:GVG + + + + + + + + + + A thickness which is relatively low. + + low thickness + quality + slender + thin + PATO:0000592 + + + decreased thickness + + + + + A thickness which is relatively low. + PATOC:GVG + + + + + + + + quality + PATO:0000593 + obsolete absolute volume value + true + + + + + + + + quality + PATO:0000594 + obsolete relative volume value + true + + + + + + + + + + A volume which is relatively high. + + high volume + quality + large volume + PATO:0000595 + + + increased volume + + + + + A volume which is relatively high. + PATOC:GVG + + + + + + + + + + A volume which is relatively low. + + low volume + quality + small volume + PATO:0000596 + + + decreased volume + + + + + A volume which is relatively low. + PATOC:GVG + + + + + + + + quality + PATO:0000597 + obsolete absolute width value + true + + + + + + + + quality + PATO:0000598 + obsolete relative width value + true + + + + + + + + + + A width which is relatively small. + + quality + narrow + PATO:0000599 + + decreased width + + + + + A width which is relatively small. + PATOC:GVG + + + + + + + + + + A width which is relatively large. + + quality + broad + wide + wide/broad + PATO:0000600 + + increased width + + + + + A width which is relatively large. + PATOC:GVG + + + + + + + + quality + PATO:0000601 + obsolete spatial value + true + + + + + + + + quality + PATO:0000602 + obsolete angle value + true + + + + + + + + quality + PATO:0000603 + obsolete closure value + true + + + + + + + + quality + PATO:0000604 + obsolete orientation value + true + + + + + + + + quality + location + position + PATO:0000605 + obsolete placement value + true + + + + + + + + quality + PATO:0000606 + obsolete absolute angle value + true + + + + + + + + quality + PATO:0000607 + obsolete relative angle value + true + + + + + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view. + + quality + blocked + PATO:0000608 + + closed + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view. + answers.com:answers.com + + + + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording not completed blocked passage or view. + quality + PATO:0000609 + + closure incomplete + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording not completed blocked passage or view. + PATOC:GVG + + + + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view. + + quality + PATO:0000610 + + open + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view. + answers.com:answers.com + + + + + + + + quality + PATO:0000611 + obsolete absolute orientation value + true + + + + + + + + quality + PATO:0000612 + obsolete relative orientation value + true + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation. + + quality + PATO:0000613 + + disoriented + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation. + PATOC:GVG + + + + + + + + + A pattern where all the repeated elements are oriented in the same direction. + + quality + PATO:0000614 + + oriented + + + + + A pattern where all the repeated elements are oriented in the same direction. + PATOC:MAH + + + + + + + + + An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally anterior structures. + quality + anterioralized + PATO:0000615 + + wholly anterioralized + + + + + An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally anterior structures. + PATOC:GVG + + + + + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's lacking symmetry. + asymmetric + asymmetry + quality + PATO:0000616 + + + + asymmetrical + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's lacking symmetry. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length. + angled + quality + PATO:0000617 + + bent + + + + + A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length. + PATOC:MAH + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's having two sides; two-sided. + quality + PATO:0000618 + + + bilateral + + + + + A positional quality inhering in a bearer by virtue of the bearer's having two sides; two-sided. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being overfilled. + + quality + PATO:0000619 + + crowded + + + + + A positional quality inhering in a bearer by virtue of the bearer's being overfilled. + WordNet:WordNet + + + + + + + + + A dorsalized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally dorsal structures. + quality + dorsalized + PATO:0000620 + + + wholly dorsalized + + + + + A dorsalized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally dorsal structures. + PATOC:melissa + + + + + + + + + + true + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being upright in position or posture. + upright + quality + PATO:0000622 + + erect + + + + + A positional quality inhering in a bearer by virtue of the bearer's being upright in position or posture. + WordNet:WordNet + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's protruding or projecting from the body. + quality + prolapse + prolapsed + PATO:0000623 + + exserted + + + + + A quality inhering in a bearer by virtue of the bearer's protruding or projecting from the body. + sdvc:sdvc + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's becoming joined together with an additional entity. + inserted + quality + introduced into + PATO:0000624 + + + inserted into + + + + + A spatial quality inhering in a bearer by virtue of the bearer's becoming joined together with an additional entity. + PATOC:nw + + + + + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being reversed in position, order, or condition. + quality + backward + reversed + PATO:0000625 + + + inverted + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being reversed in position, order, or condition. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being moved or displaced to one side so as to make lateral. + quality + PATO:0000626 + + lateralized + + + + + A positional quality inhering in a bearer by virtue of the bearer's being moved or displaced to one side so as to make lateral. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A spatial pattern quality inhering in a bearer by virtue of the bearer's being confined or restricted to a particular location. + focal + localised + quality + PATO:0000627 + + + + localized + + + + + A spatial pattern quality inhering in a bearer by virtue of the bearer's being confined or restricted to a particular location. + WordNet:WordNet + + + + + + + + + A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position. + PATO:0000621 + ectopic + mislocalized + quality + PATO:0000628 + + + mislocalised + + + + + A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's having mistakenly taken course, way, or passage; ill-routed. + quality + PATO:0000629 + + misrouted + + + + + A positional quality inhering in a bearer by virtue of the bearer's having mistakenly taken course, way, or passage; ill-routed. + NDI:NDI + + + + + + + + + A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally posterior structures. + quality + posterioralized + PATO:0000630 + + + wholly posterioralized + + + + + A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally posterior structures. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being stretched out and lying at full length along the ground. + quality + PATO:0000631 + + prostrate + + + + + A positional quality inhering in a bearer by virtue of the bearer's being stretched out and lying at full length along the ground. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division by a longitudinal plane into similar halves. + symmetric + quality + PATO:0000632 + + + + similar pattern in both halves + symmetrical + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division by a longitudinal plane into similar halves. + PATOC:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled. + + quality + PATO:0000633 + + uncrowded + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled. + PATOC:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's involvement of only one part or side. + quality + PATO:0000634 + + + unilateral + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's involvement of only one part or side. + WordNet:WordNet + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's not being confined or restricted to a particular location. + quality + PATO:0000635 + + + unlocalised + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's not being confined or restricted to a particular location. + WordNet:WordNet + + + + + + + + + A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally ventral structures. + quality + ventralized + PATO:0000636 + + + wholly ventralized + + + + + A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally ventral structures. + PATOC:GVG + + + + + + + + quality + PATO:0000637 + obsolete structure value + true + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's consisting of blebbing of the nucleus and DNA fragmentation due to the cell undergoing a specific form of programmed cell death termed apoptosis. + GO:0006915 + quality + PATO:0000638 + + apoptotic + + + + + A structural quality inhering in a bearer by virtue of the bearer's consisting of blebbing of the nucleus and DNA fragmentation due to the cell undergoing a specific form of programmed cell death termed apoptosis. + PATOC:GVG + + + + + + + + + + + + + + + + + A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process. + + degeneration + quality + PATO:0000639 + + + degenerate + + + + + A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process. + PATOC:PortlandMeetingFeb2015 + PATOC:mb + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's exhibiting an alteration in size, shape or organization of its constituent cells. + dysplasia + quality + PATO:0000640 + + + dysplastic + + + + + A structural quality inhering in a bearer by virtue of the bearer's exhibiting an alteration in size, shape or organization of its constituent cells. + PATOC:MAH + + + + + + + + quality + PATO:0000641 + obsolete deposition defective + true + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity. + + fused + fused to + quality + coalesced + joined with + merged with + PATO:0000642 + + + + fused with + + + + + A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it. + quality + PATO:0000643 + + + herniated + + + + + A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it. + spinalstenosis:spinalstenosis + + + + + + + + + A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells. + + PATO:0000943 + hyperplasia + quality + overdeveloped + PATO:0000644 + + + hyperplastic + + + + + A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells. + Wikipedia:http://en.wikipedia.org/wiki/Hyperplastic + + + + + + + + + + A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue. + + PATO:0000942 + hypoplasia + quality + underdeveloped + PATO:0000645 + + + hypoplastic + + + + + A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue. + PATOC:GVG + + + + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's being distorted during formation. + malformation + quality + PATO:0000646 + + + malformed + + + + + A morphological quality inhering in a bearer by virtue of the bearer's being distorted during formation. + PATOC:MAH + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's undergoing unprogrammed cell death. + quality + PATO:0000647 + + + necrotic + + + + + A structural quality inhering in a bearer by virtue of the bearer's undergoing unprogrammed cell death. + Wikipedia:http://en.wikipedia.org/wiki/Necrotic + + + + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's being blocked or filled with obstacles or an obstacle. + quality + PATO:0000648 + + + obstructed + + + + + A morphological quality inhering in a bearer by virtue of the bearer's being blocked or filled with obstacles or an obstacle. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + true + + + + + + + + + + true + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity. + + unfused + quality + PATO:0000651 + + + unfused from + + + + + A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity. + PATOC:nw + + + + + + + + quality + PATO:0000652 + obsolete substance value + true + + + + + + + + quality + PATO:0000653 + obsolete addictive substance value + true + + + + + + + + quality + PATO:0000654 + obsolete alcochol value + true + + + + + + + + quality + PATO:0000655 + obsolete amphetamine value + true + + + + + + + + quality + PATO:0000656 + obsolete time_quantity + true + + + + + + + + quality + PATO:0000657 + obsolete length_quantity + true + + + + + + + + quality + PATO:0000658 + obsolete metamphetamine value + true + + + + + + + + quality + PATO:0000659 + obsolete temparature_quantity + true + + + + + + + + quality + PATO:0000660 + obsolete angle_quantity + true + + + + + + + + quality + PATO:0000661 + obsolete solid substance value + true + + + + + + + + quality + PATO:0000662 + obsolete volume_quantity + true + + + + + + + + quality + PATO:0000663 + obsolete occurrent + true + + + + + + + + quality + PATO:0000664 + obsolete substance_quantity + true + + + + + + + + + A color brightness which is relatively high. + + light + quality + PATO:0000665 + + high brightness + + + + + A color brightness which is relatively high. + PATOC:MAH + + + + + + + + quality + PATO:0000666 + obsolete energy_quantity + true + + + + + + + + quality + PATO:0000667 + obsolete liquid substance value + true + + + + + + + + quality + PATO:0000668 + obsolete mass_quantity + true + + + + + + + + quality + PATO:0000669 + obsolete concentration_unit + true + + + + + + + + quality + PATO:0000670 + obsolete saccharin versus water value + true + + + + + + + + quality + PATO:0000671 + obsolete water value + true + + + + + + + + quality + PATO:0000672 + obsolete unit + true + + + + + + + + quality + PATO:0000673 + obsolete temperature value + true + + + + + + + + quality + PATO:0000674 + obsolete absolute temperature value + true + + + + + + + + quality + PATO:0000675 + obsolete body temperature value + true + + + + + + + + quality + PATO:0000676 + obsolete relative temperature value + true + + + + + + + + + + true + + + + + + + + + + true + + + + + + + + quality + PATO:0000679 + obsolete temporal value + true + + + + + + + + quality + PATO:0000680 + obsolete absolute temporal value + true + + + + + + + + quality + PATO:0000681 + obsolete incidence value + true + + + + + + + + quality + PATO:0000682 + obsolete rate value + true + + + + + + + + quality + PATO:0000683 + obsolete relative temporal value + true + + + + + + + + quality + PATO:0000684 + obsolete absolute incidence value + true + + + + + + + + quality + PATO:0000685 + obsolete relative incidence value + true + + + + + + + + quality + PATO:0000686 + obsolete absolute rate value + true + + + + + + + + quality + PATO:0000687 + obsolete relative rate value + true + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase. + + quality + PATO:0000688 + + asynchronous + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase. + WordNet:WordNet + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent. + + PATO:0000429 + uninterrupted + quality + PATO:0000689 + + continuous + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions. + + PATO:0000426 + interrupted + quality + intermittent + PATO:0000690 + + discontinuous + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + true + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's origin or development at an unusual time or out of the regular sequence. + quality + PATO:0000692 + + heterochronic + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's origin or development at an unusual time or out of the regular sequence. + answers.com:answers.com + + + + + + + + quality + PATO:0000693 + obsolete late + true + + + + + + + + + A quality of a process which starts earlier than the natural start time or the reference process. + PATO:0000691 + PATO:0002086 + advanced + quality + early + precocious + PATO:0000694 + + premature + + + + + A quality of a process which starts earlier than the natural start time or the reference process. + PATO:LC + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase. + + quality + PATO:0000695 + + synchronous + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase. + PATOC:GVG + + + + + + + + quality + PATO:0000696 + obsolete texture value + true + + + + + + + + quality + PATO:0000697 + obsolete relative texture value + true + + + + + + + + quality + PATO:0000698 + obsolete floury + true + + + + + + + + quality + PATO:0000699 + obsolete glutinous + true + + + + + + + + + A texture quality inhering in a bearer by virtue of the bearer's irregular surface. + + PATO:0001616 + coarse + quality + PATO:0000700 + + + rough + + + + + A texture quality inhering in a bearer by virtue of the bearer's irregular surface. + PATOC:GVG + + + + + + + + + A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities. + + quality + PATO:0000701 + + + smooth + + + + + A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities. + PATOC:GVG + + + + + + + + quality + PATO:0000702 + obsolete threshold value + true + + + + + + + + quality + PATO:0000703 + obsolete absolute threshold value + true + + + + + + + + quality + PATO:0000704 + obsolete pain threshold value + true + + + + + + + + quality + PATO:0000705 + obsolete relative threshold value + true + + + + + + + + + + A threshold which is relatively high. + + PATO:0000709 + high threshold + quality + PATO:0000706 + + + + increased threshold + + + + + A threshold which is relatively high. + PATOC:GVG + + + + + + + + + + true + + + + + + + + + + A threshold which is relatively low. + + PATO:0000707 + low threshold + quality + PATO:0000708 + + + + decreased threshold + + + + + A threshold which is relatively low. + PATOC:GVG + + + + + + + + + + true + + + + + + + + quality + PATO:0000710 + obsolete time value + true + + + + + + + + quality + PATO:0000711 + obsolete absolute time value + true + + + + + + + + quality + PATO:0000712 + obsolete bouts value + true + + + + + + + + quality + PATO:0000713 + obsolete relative time value + true + + + + + + + + quality + PATO:0000714 + obsolete latency value + true + + + + + + + + + + true + + + + + + + + + + true + + + + + + + + quality + PATO:0000717 + obsolete viability value + true + + + + + + + + + A viability quality inhering in a population by virtue of the bearer's long term survival inability. + quality + PATO:0000718 + + + lethal (sensu genetics) + + + + + A viability quality inhering in a population by virtue of the bearer's long term survival inability. + PATOC:GVG + + + + + + + + + A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population. + quality + PATO:0000719 + + + viable + + + + + A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population. + PATOC:GVG + + + + + + + + quality + PATO:0000720 + obsolete yield value + true + + + + + + + + quality + PATO:0000721 + obsolete absolute yield value + true + + + + + + + + quality + PATO:0000722 + obsolete relative yield value + true + + + + + + + + quality + PATO:0000723 + obsolete high yield + true + + + + + + + + quality + PATO:0000724 + obsolete low yield + true + + + + + + + + quality + PATO:0000725 + obsolete function value + true + + + + + + + + quality + PATO:0000726 + obsolete autonomic function value + true + + + + + + + + quality + PATO:0000727 + obsolete behavioral function value + true + + + + + + + + quality + PATO:0000728 + obsolete metabolic function value + true + + + + + + + + quality + PATO:0000729 + obsolete physiological function value + true + + + + + + + + quality + PATO:0000730 + obsolete relative function value + true + + + + + + + + quality + PATO:0000731 + obsolete body position value + true + + + + + + + + quality + PATO:0000732 + obsolete body tone value + true + + + + + + + + quality + PATO:0000733 + obsolete piloerection value + true + + + + + + + + quality + PATO:0000734 + obsolete abdominal tone value + true + + + + + + + + quality + PATO:0000735 + obsolete limb tone value + true + + + + + + + + quality + PATO:0000736 + obsolete dysfunctional value + true + + + + + + + + quality + PATO:0000737 + obsolete functional value + true + + + + + + + + quality + PATO:0000738 + obsolete enzyme function value + true + + + + + + + + quality + PATO:0000739 + obsolete absolute enzyme function value + true + + + + + + + + quality + PATO:0000740 + obsolete relative enzyme function value + true + + + + + + + + quality + PATO:0000741 + obsolete high enzyme function value + true + + + + + + + + quality + PATO:0000742 + obsolete low enzyme function value + true + + + + + + + + quality + PATO:0000743 + obsolete arousal value + true + + + + + + + + quality + PATO:0000744 + obsolete balance value + true + + + + + + + + quality + PATO:0000745 + obsolete behavioral quality value + true + + + + + + + + quality + PATO:0000746 + obsolete consumption value + true + + + + + + + + quality + PATO:0000747 + obsolete coordination value + true + + + + + + + + quality + PATO:0000748 + obsolete discrimination value + true + + + + + + + + quality + PATO:0000749 + obsolete gait value + true + + + + + + + + quality + PATO:0000750 + obsolete learning and memory value + true + + + + + + + + quality + PATO:0000751 + obsolete locomotor activity value + true + + + + + + + + quality + PATO:0000752 + obsolete mating value + true + + + + + + + + quality + PATO:0000753 + obsolete spontaneous activity value + true + + + + + + + + quality + PATO:0000754 + obsolete startle response + true + + + + + + + + quality + PATO:0000755 + obsolete vocalization value + true + + + + + + + + quality + PATO:0000756 + obsolete transfer arousal value + true + + + + + + + + + + A balance quality inhering in a bearer by virtue of the bearer's having balance. + + quality + PATO:0000757 + + balanced + + + + + A balance quality inhering in a bearer by virtue of the bearer's having balance. + PATOC:GVG + + + + + + + + + A balance quality inhering in a bearer by virtue of the bearer's lacking balance. + + quality + PATO:0000758 + + unbalanced + + + + + A balance quality inhering in a bearer by virtue of the bearer's lacking balance. + PATOC:GVG + + + + + + + + + + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting paralytic behaviour when subjected to mechanical shock. + quality + PATO:0000759 + + + bang sensitive + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting paralytic behaviour when subjected to mechanical shock. + PATOC:flybase + + + + + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity. + + hyperactive + quality + PATO:0000760 + + increased behavioural activity + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity. + PATOC:GVG + + + + + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity. + + hypoactive + quality + PATO:0000761 + + decreased behavioural activity + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity. + PATOC:GVG + + + + + + + + Diminished, damaged, or weakened. + PATO:0001624 + quality + PATO:0000762 + + obsolete impaired + true + + + + + Diminished, damaged, or weakened. + answers.com:answers.com + + + + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's being affected by loss of the ability to move a body part. + palsy + quality + PATO:0000763 + + paralysed + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's being affected by loss of the ability to move a body part. + PATOC:GVG + + + + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's receiving or being subjected to an action without responding or initiating an action in return. + quality + PATO:0000764 + + passive + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's receiving or being subjected to an action without responding or initiating an action in return. + www.answers.com:www.answers.com + + + + + + + + quality + PATO:0000765 + obsolete absolute consumption value + true + + + + + + + + quality + PATO:0000766 + obsolete relative consumption value + true + + + + + + + + A consumption which is relatively high. + high consumption + quality + increased propensity to consume + PATO:0000767 + + + Use GO:0007631 + obsolete increased consumption + true + + + + + A consumption which is relatively high. + PATOC:GVG + + + + + + + + A consumption which is relatively low. + low consumption + quality + decreased propensity to consume + PATO:0000768 + + + Use GO:0007631 + obsolete decreased consumption + true + + + + + A consumption which is relatively low. + PATOC:GVG + + + + + + + + + + A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement. + + quality + PATO:0000769 + + + coordinated + + + + + A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement. + PATOC:GVG + + + + + + + + + A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement. + + quality + PATO:0000770 + + + uncoordinated + + + + + A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement. + PATOC:GVG + + + + + + + + + + A preference quality in a bearer by virtue of the bearer's disliking a perceived stimulus. + quality + PATO:0000771 + + + + aversion + + + + + A preference quality in a bearer by virtue of the bearer's disliking a perceived stimulus. + PATOC:GVG + + + + + + + + + A preference quality in a bearer by virtue of the bearer's having no preference to a perceived stimulus. + quality + PATO:0000772 + + + + indifference + + + + + A preference quality in a bearer by virtue of the bearer's having no preference to a perceived stimulus. + PATOC:GVG + + + + + + + + + A discrimination quality in a bearer by virtue of the bearer's liking a perceived stimulus. + quality + PATO:0000773 + + + + preference + + + + + A discrimination quality in a bearer by virtue of the bearer's liking a perceived stimulus. + PATOC:GVG + + + + + + + + quality + PATO:0000774 + obsolete bizarre gate + true + + + + + + + + quality + PATO:0000775 + obsolete learning value + true + + + + + + + + quality + PATO:0000776 + obsolete memory value + true + + + + + + + + quality + PATO:0000777 + obsolete long term memory value + true + + + + + + + + quality + PATO:0000778 + obsolete short term memory value + true + + + + + + + + quality + PATO:0000779 + obsolete absolute locomotor activity value + true + + + + + + + + quality + PATO:0000780 + obsolete relative locomotor activity value + true + + + + + + + + quality + PATO:0000781 + obsolete circulatory function value + true + + + + + + + + quality + PATO:0000782 + obsolete defensive function value + true + + + + + + + + quality + PATO:0000783 + obsolete digestive function value + true + + + + + + + + quality + PATO:0000784 + obsolete excretory function value + true + + + + + + + + quality + PATO:0000785 + obsolete muscle function value + true + + + + + + + + quality + PATO:0000786 + obsolete neural function value + true + + + + + + + + quality + PATO:0000787 + obsolete neurobehavioral function value + true + + + + + + + + quality + PATO:0000788 + obsolete reproductive function value + true + + + + + + + + quality + PATO:0000789 + obsolete respiratory function value + true + + + + + + + + quality + PATO:0000790 + obsolete heart rate value + true + + + + + + + + quality + PATO:0000791 + obsolete immune function value + true + + + + + + + + quality + PATO:0000792 + obsolete repair function value + true + + + + + + + + quality + PATO:0000793 + obsolete immubocompetent value + true + + + + + + + + quality + PATO:0000794 + obsolete immunodeficient value + true + + + + + + + + quality + PATO:0000795 + obsolete healing value + true + + + + + + + + quality + PATO:0000796 + obsolete regeneration value + true + + + + + + + + quality + PATO:0000797 + obsolete urination value + true + + + + + + + + quality + PATO:0000798 + obsolete defecation value + true + + + + + + + + quality + PATO:0000799 + obsolete muscle elevation value + true + + + + + + + + quality + PATO:0000800 + obsolete muscle strength value + true + + + + + + + + quality + PATO:0000801 + obsolete motor function value + true + + + + + + + + quality + PATO:0000802 + obsolete sensory function value + true + + + + + + + + quality + PATO:0000803 + obsolete tactile response value + true + + + + + + + + quality + PATO:0000804 + obsolete motor performance value + true + + + + + + + + quality + PATO:0000805 + obsolete auditory value + true + + + + + + + + quality + PATO:0000806 + obsolete olfactory value + true + + + + + + + + quality + PATO:0000807 + obsolete proprioreception value + true + + + + + + + + quality + PATO:0000808 + obsolete reflex value + true + + + + + + + + quality + PATO:0000809 + obsolete taste value + true + + + + + + + + quality + PATO:0000810 + obsolete touch value + true + + + + + + + + quality + PATO:0000811 + obsolete visual value + true + + + + + + + + quality + PATO:0000812 + obsolete odor acuity value + true + + + + + + + + quality + PATO:0000813 + obsolete odor type value + true + + + + + + + + quality + PATO:0000814 + obsolete taste acuity value + true + + + + + + + + quality + PATO:0000815 + obsolete absolute odor acuity value + true + + + + + + + + quality + PATO:0000816 + obsolete relative odor acuity value + true + + + + + + + + quality + PATO:0000817 + obsolete anosmia + true + + + + + + + + quality + PATO:0000818 + obsolete concentration_quantity + true + + + + + + + + quality + PATO:0000819 + obsolete quantity + true + + + + + + + + quality + PATO:0000820 + obsolete absolute taste acuity value + true + + + + + + + + quality + PATO:0000821 + obsolete relative taste acuity value + true + + + + + + + + quality + PATO:0000822 + obsolete taste type value + true + + + + + + + + quality + PATO:0000823 + obsolete quinine taste + true + + + + + + + + quality + PATO:0000824 + obsolete water taste + true + + + + + + + + quality + PATO:0000825 + obsolete visual ability value + true + + + + + + + + quality + PATO:0000826 + obsolete visual acuity value + true + + + + + + + + quality + PATO:0000827 + obsolete visual threshold value + true + + + + + + + + quality + PATO:0000828 + obsolete visual placing value + true + + + + + + + + quality + PATO:0000829 + obsolete absolute visual ability value + true + + + + + + + + quality + PATO:0000830 + obsolete relative visual ability value + true + + + + + + + + quality + PATO:0000831 + obsolete absolute visual acuity value + true + + + + + + + + quality + PATO:0000832 + obsolete relative visual acuity value + true + + + + + + + + quality + PATO:0000833 + obsolete absolute visual threshold value + true + + + + + + + + quality + PATO:0000834 + obsolete relative visual threshold value + true + + + + + + + + quality + PATO:0000835 + obsolete auditory acuity value + true + + + + + + + + quality + PATO:0000836 + obsolete auditory ability value + true + + + + + + + + quality + PATO:0000837 + obsolete auditory threshold value + true + + + + + + + + quality + PATO:0000838 + obsolete absolute auditory ability value + true + + + + + + + + quality + PATO:0000839 + obsolete relative auditory ability value + true + + + + + + + + quality + PATO:0000840 + obsolete absolute auditory acuity value + true + + + + + + + + quality + PATO:0000841 + obsolete relative auditory acuity value + true + + + + + + + + quality + PATO:0000842 + obsolete absolute auditory threshold value + true + + + + + + + + quality + PATO:0000843 + obsolete relative auditory threshold value + true + + + + + + + + quality + PATO:0000844 + obsolete auditory acuity + true + + + + + + + + quality + PATO:0000845 + obsolete auditory ability + true + + + + + + + + quality + PATO:0000846 + obsolete auditory threshold + true + + + + + + + + quality + PATO:0000847 + obsolete absolute auditory acuity + true + + + + + + + + quality + PATO:0000848 + obsolete relative auditory acuity + true + + + + + + + + quality + PATO:0000849 + obsolete absolute auditory ability + true + + + + + + + + quality + PATO:0000850 + obsolete relative auditory ability + true + + + + + + + + quality + PATO:0000851 + obsolete absolute auditory threshold + true + + + + + + + + quality + PATO:0000852 + obsolete relative auditory threshold + true + + + + + + + + quality + PATO:0000853 + obsolete blinking reflex value + true + + + + + + + + quality + PATO:0000854 + obsolete contact righting reflex value + true + + + + + + + + quality + PATO:0000855 + obsolete corneal reflex value + true + + + + + + + + quality + PATO:0000856 + obsolete flinch reflex value + true + + + + + + + + quality + PATO:0000857 + obsolete lordosis reflex value + true + + + + + + + + quality + PATO:0000858 + obsolete ocular reflex value + true + + + + + + + + quality + PATO:0000859 + obsolete pinna reflex value + true + + + + + + + + quality + PATO:0000860 + obsolete postural reflex value + true + + + + + + + + quality + PATO:0000861 + obsolete proboscis extension reflex value + true + + + + + + + + quality + PATO:0000862 + obsolete pupillary reflex value + true + + + + + + + + quality + PATO:0000863 + obsolete righting reflex value + true + + + + + + + + quality + PATO:0000864 + obsolete spinal reflex value + true + + + + + + + + quality + PATO:0000865 + obsolete startle reflex value + true + + + + + + + + quality + PATO:0000866 + obsolete suckling reflex value + true + + + + + + + + quality + PATO:0000867 + obsolete swallowing reflex value + true + + + + + + + + quality + PATO:0000868 + obsolete vibrissae reflex value + true + + + + + + + + quality + PATO:0000869 + obsolete prepulse inhibition value + true + + + + + + + + quality + PATO:0000870 + obsolete relative neurobehavioral function value + true + + + + + + + + quality + PATO:0000871 + obsolete aggressive + true + + + + + + + + quality + PATO:0000872 + obsolete anxious + true + + + + + + + + quality + PATO:0000873 + obsolete cataleptic + true + + + + + + + + quality + PATO:0000874 + obsolete fearful + true + + + + + + + + quality + PATO:0000875 + obsolete irritable + true + + + + + + + + quality + PATO:0000876 + obsolete respiratory rate value + true + + + + + + + + quality + PATO:0000877 + obsolete absolute respiratory rate value + true + + + + + + + + quality + PATO:0000878 + obsolete relative respiratory rate value + true + + + + + + + + quality + PATO:0000879 + obsolete fecundity value + true + + + + + + + + quality + PATO:0000880 + obsolete fertility value + true + + + + + + + + quality + PATO:0000881 + obsolete gestational period value + true + + + + + + + + quality + PATO:0000882 + obsolete litter size value + true + + + + + + + + quality + PATO:0000883 + obsolete female fertility value + true + + + + + + + + quality + PATO:0000884 + obsolete hybrid fertility value + true + + + + + + + + quality + PATO:0000885 + obsolete male fertility value + true + + + + + + + + quality + PATO:0000886 + obsolete absolute litter size value + true + + + + + + + + quality + PATO:0000887 + obsolete relative litter size value + true + + + + + + + + + + A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction. + + quality + PATO:0000888 + + + female fertile + + + + + A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction. + PATOC:GVG + + + + + + + + quality + PATO:0000889 + obsolete cytoplasmic male sterility value + true + + + + + + + + + + A male fertility quality inhering in a male by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + + quality + male infertile + PATO:0000890 + + + male sterile + + + + + A male fertility quality inhering in a male by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + PATOC:GVG + + + + + + + + + A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. + + quality + PATO:0000891 + + + male fertile + + + + + A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. + PATOC:GVG + + + + + + + + + A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + + quality + female infertile + PATO:0000892 + + + female sterile + + + + + A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + PATOC:GVG + + + + + + + + quality + PATO:0000893 + obsolete backcross fertility value + true + + + + + + + + quality + PATO:0000894 + obsolete cytoplasmic sterility value + true + + + + + + + + quality + PATO:0000895 + obsolete f1 fertility value + true + + + + + + + + quality + PATO:0000896 + obsolete f2 fertility value + true + + + + + + + + quality + PATO:0000897 + obsolete germ line dependent fertility value + true + + + + + + + + quality + PATO:0000898 + obsolete intercross fertility value + true + + + + + + + + quality + PATO:0000899 + obsolete soma dependent fertility value + true + + + + + + + + quality + PATO:0000900 + obsolete backcross fertile + true + + + + + + + + quality + backcross infertile + PATO:0000901 + obsolete backcross sterile + true + + + + + + + + quality + PATO:0000902 + obsolete chinsurah boro type value + true + + + + + + + + quality + PATO:0000903 + obsolete cms-hl type value + true + + + + + + + + quality + PATO:0000904 + obsolete wild abortive value + true + + + + + + + + quality + PATO:0000905 + obsolete f1 fertile + true + + + + + + + + quality + F1 infertile + PATO:0000906 + obsolete f1 sterile + true + + + + + + + + quality + PATO:0000907 + obsolete f2 fertile + true + + + + + + + + quality + F2 infertile + PATO:0000908 + obsolete f2 sterile + true + + + + + + + + quality + PATO:0000909 + obsolete intercross fertile + true + + + + + + + + quality + intercross infertile + PATO:0000910 + obsolete intercross sterile + true + + + + + + + + + + A rate which is relatively low. + + slow rate + quality + PATO:0000911 + + + decreased rate + + + + + A rate which is relatively low. + PATO:GVG + + + + + + + + + + A rate which is relatively high. + + fast rate + high rate + quality + PATO:0000912 + + + increased rate + + + + + A rate which is relatively high. + PATO:GVG + + + + + + + + quality + PATO:0000913 + obsolete qualitative value + true + + + + + + + + quality + PATO:0000914 + obsolete continuant + true + + + + + + + + + A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. + quality + PATO:0000915 + + + thickness + + + + + A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. + WordNet:WordNet + + + + + + + + quality + PATO:0000916 + obsolete absolute thickness + true + + + + + + + + quality + PATO:0000917 + obsolete relative thickness + true + + + + + + + + + A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. + quality + PATO:0000918 + + + + volume + + + + + A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. + PATOC:GVG + + + + + + + + quality + PATO:0000919 + obsolete absolute volume + true + + + + + + + + quality + PATO:0000920 + obsolete relative volume + true + + + + + + + + + A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. + quality + breadth + PATO:0000921 + + + width + + + + + A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. + PATOC:GVG + + + + + + + + quality + PATO:0000922 + obsolete absolute width + true + + + + + + + + quality + PATO:0000923 + obsolete relative width + true + + + + + + + + quality + PATO:0000924 + obsolete relative enzyme function + true + + + + + + + + quality + PATO:0000925 + obsolete absolute enzyme function + true + + + + + + + + quality + PATO:0000926 + obsolete intercross fertility + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to being sensitivity to the action of radiant energy. + quality + PATO:0000927 + + + + photosensitivity + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to being sensitivity to the action of radiant energy. + WordNet:WordNet + + + + + + + + quality + PATO:0000928 + obsolete absolute photosensitivity + true + + + + + + + + quality + PATO:0000929 + obsolete light intensivity sensitivity + true + + + + + + + + quality + PATO:0000930 + obsolete light_quality sensitivity + true + + + + + + + + quality + PATO:0000931 + obsolete blue light sensitivity + true + + + + + + + + quality + PATO:0000932 + obsolete far red light sensitivity + true + + + + + + + + quality + PATO:0000933 + obsolete red light sensitivity + true + + + + + + + + quality + PATO:0000934 + obsolete u v light sensitivity + true + + + + + + + + quality + PATO:0000935 + obsolete relative photosensitivity + true + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly by having or as if having an end or point cut off. + truncate + quality + PATO:0000936 + + truncated + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly by having or as if having an end or point cut off. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking organisation. + + quality + PATO:0000937 + + + disorganized + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking organisation. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation. + + quality + PATO:0000938 + + + organized + + + + + A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation. + PATOC:GVG + + + + + + + + quality + PATO:0000939 + + obsolete regular shape + true + + + + + + + + quality + PATO:0000940 + + obsolete irregular shape + true + + + + + + + + + A structural quality inhering in a cytoplasm that contains fluid filled cavities. + quality + PATO:0000941 + + + + vacuolated + + + + + A structural quality inhering in a cytoplasm that contains fluid filled cavities. + PATOC:mh + + + + + + + + + + true + + + + + + + + + + true + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a sharp or tapered end or point. + apiculate + quality + PATO:0000944 + + + sharpness + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a sharp or tapered end or point. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's exhibiting a downward bending of its leaves or other plant parts. + quality + PATO:0000945 + + epinastic + + + + + A shape quality inhering in a bearer by virtue of the bearer's exhibiting a downward bending of its leaves or other plant parts. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a somewhat elongated form with approximately parallel sides. + quality + PATO:0000946 + + + + oblong + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a somewhat elongated form with approximately parallel sides. + PATOC:GVG + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section. + ellipse-shaped + ellipsoid + elliptical + quality + oval + ovoid + PATO:0000947 + + + + elliptic + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section. + PATOC:GVG + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having a sinus or rounded lobe at the base. + cordate + cordiform + quality + PATO:0000948 + + + Having the shape of heart. + heart shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having a sinus or rounded lobe at the base. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being abnormally flattened or coalesced. + quality + PATO:0000949 + + + + fasciated + + + + + A shape quality inhering in a bearer by virtue of the bearer's being abnormally flattened or coalesced. + PATOC:GVG + + + + + + + + + A color between white and black colors. + quality + plumbeous + PATO:0000950 + + + grey + + + + + A color between white and black colors. + http://en.wikipedia.org/wiki/Grey + + + + + + + + + A color that falls about midway between red and blue in hue. + quality + PATO:0000951 + + + purple + + + + + A color that falls about midway between red and blue in hue. + Dictionary:http://dictionary.reference.com/ + + + + + + + + + A color consisting of dark orange, red, of very low intensity. + quality + PATO:0000952 + + + brown + + + + + A color consisting of dark orange, red, of very low intensity. + Wikipedia:http://en.wikipedia.org/wiki/Brown + + + + + + + + + A color hue with high-medium wavelength that of that portion of the visible spectrum lying between red and yellow, evoked in the human observer by radiant energy with wavelengths of approximately 585 to 620 nanometers. + quality + PATO:0000953 + + + orange + + + + + A color hue with high-medium wavelength that of that portion of the visible spectrum lying between red and yellow, evoked in the human observer by radiant energy with wavelengths of approximately 585 to 620 nanometers. + Wikipedia:http://en.wikipedia.org/wiki/Orange + + + + + + + + + Red color having medium to high brightness and low to moderate saturation. + quality + PATO:0000954 + + + pink + + + + + Red color having medium to high brightness and low to moderate saturation. + PATOC:MAH + + + + + + + + + + A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. + + quality + PATO:0000955 + + + fertile + + + + + A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. + PATOC:GVG + + + + + + + + + A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + + quality + PATO:0000956 + + + sterile + + + + + A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + PATOC:GVG + + + + + + + + + An optical quality which obtains by virtue of the ability of the bearer to absorb visible light. + quality + PATO:0000957 + + opacity + + + + + An optical quality which obtains by virtue of the ability of the bearer to absorb visible light. + PATOC:GVG + + + + + + + + quality + PATO:0000958 + obsolete opacity value + true + + + + + + + + quality + PATO:0000959 + obsolete relative opacity + true + + + + + + + + quality + PATO:0000960 + obsolete absolute opacity + true + + + + + + + + quality + PATO:0000961 + obsolete relative opacity value + true + + + + + + + + quality + PATO:0000962 + obsolete absolute opacity value + true + + + + + + + + + A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy. + + non-transparent + quality + clouding + cloudy + PATO:0000963 + + + opaque + + + + + A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy. + PATOC:GVG + + + + + + + + + A optical quality inhering in a bearer by virtue of the bearer's lacking opacity. + + clear + hyaline + quality + PATO:0000964 + + + transparent + + + + + A optical quality inhering in a bearer by virtue of the bearer's lacking opacity. + PATOC:GVG + + + + + + + + + A pattern quality of inhering in a bearer by virtue of the correspondence in size, shape, and relative position of the bearer's parts on opposite sides of a dividing line or median plane or about a center or axis. + quality + PATO:0000965 + + symmetry + + + + + A pattern quality of inhering in a bearer by virtue of the correspondence in size, shape, and relative position of the bearer's parts on opposite sides of a dividing line or median plane or about a center or axis. + PATOC:GVG + + + + + + + + quality + PATO:0000966 + obsolete symmetry value + true + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a sinuate margin and rippled surface. + PATO:0001610 + PATO:0001939 + undulated + undulating + waved + wavy + quality + rippled + sinuate + PATO:0000967 + + + + undulate + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a sinuate margin and rippled surface. + PATOC:GVG + + + + + + + + quality + PATO:0000968 + obsolete albino value + true + + + + + + + + + A size quality inhering in a bearer by virtue of the bearer's being abnormally small. + dwarfed + quality + PATO:0000969 + + dwarf-like + + + + + A size quality inhering in a bearer by virtue of the bearer's being abnormally small. + Answers.com:Answers.com + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + quality + PATO:0000970 + + + + permeability + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + Biology-online:Biology-online + + + + + + + + quality + PATO:0000971 + obsolete absolute permeability + true + + + + + + + + quality + PATO:0000972 + obsolete relative permeability + true + + + + + + + + + A permeability quality inhering in a bearer by virtue of the bearer's disposition to admit the passage of gas or liquid through pores or interstices. + quality + PATO:0000973 + + + + porosity + + + + + A permeability quality inhering in a bearer by virtue of the bearer's disposition to admit the passage of gas or liquid through pores or interstices. + PATOC:GVG + + + + + + + + quality + PATO:0000974 + obsolete relative porosity + true + + + + + + + + quality + PATO:0000975 + obsolete absolute porosity + true + + + + + + + + quality + PATO:0000976 + obsolete permeability value + true + + + + + + + + quality + PATO:0000977 + obsolete absolute permeability value + true + + + + + + + + quality + PATO:0000978 + obsolete relative permeability value + true + + + + + + + + quality + PATO:0000979 + obsolete porosity value + true + + + + + + + + quality + PATO:0000980 + obsolete absolute porosity value + true + + + + + + + + quality + PATO:0000981 + obsolete relative porosity value + true + + + + + + + + + + A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + + quality + porous + PATO:0000982 + + + permeable + + + + + A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + Biology-online:Biology-online + + + + + + + + + A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + + quality + PATO:0000983 + + + impermeable + + + + + A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + Biology-online:Biology-online + + + + + + + + + + A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices. + + quality + PATO:0000984 + + + porous + + + + + A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices. + PATOC:GVG + + + + + + + + + A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices. + + quality + PATO:0000985 + + + non-porous + + + + + A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices. + PATOC:GVG + + + + + + + + quality + PATO:0000986 + obsolete absolute consistency + true + + + + + + + + quality + PATO:0000987 + obsolete relative consistency + true + + + + + + + + quality + PATO:0000988 + obsolete relative consistency value + true + + + + + + + + quality + PATO:0000989 + obsolete absolute consistency value + true + + + + + + + + quality + PATO:0000990 + obsolete consistent + true + + + + + + + + quality + PATO:0000991 + obsolete inconsistent + true + + + + + + + + + A physical quality of a liquid inhering in a bearer by virtue of the bearer's disposition to internal resistance to flow. + quality + PATO:0000992 + + + viscosity + + + + + A physical quality of a liquid inhering in a bearer by virtue of the bearer's disposition to internal resistance to flow. + PATOC:GVG + + + + + + + + quality + PATO:0000993 + obsolete relative viscosity + true + + + + + + + + quality + PATO:0000994 + obsolete absolute viscosity + true + + + + + + + + quality + PATO:0000995 + obsolete viscosity value + true + + + + + + + + quality + PATO:0000996 + obsolete absolute viscosity value + true + + + + + + + + quality + PATO:0000997 + obsolete relative viscosity value + true + + + + + + + + + A viscosity quality inhering in a bearer by virtue of the bearer's having viscosity. + quality + PATO:0000998 + + + + viscous + + + + + A viscosity quality inhering in a bearer by virtue of the bearer's having viscosity. + PATOC:GVG + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's successive change from one thing or state to another and back again. + quality + PATO:0000999 + + alternation + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's successive change from one thing or state to another and back again. + WordNet:WordNet + + + + + + + + quality + PATO:0001000 + obsolete relative alternation + true + + + + + + + + quality + PATO:0001001 + obsolete absolute alternation + true + + + + + + + + quality + PATO:0001002 + obsolete alternation value + true + + + + + + + + quality + PATO:0001003 + obsolete relative alternation value + true + + + + + + + + quality + PATO:0001004 + obsolete absolute alternation value + true + + + + + + + + + A time quality inhering in a bearer by virtue of the time it elapses for the bearer to respond to a stimulus. + quality + PATO:0001005 + + This class is a candidate for obsoletion. The definition is not clear, and the placement under "delayed" is not consistent with the definition. + latency + + + + + A time quality inhering in a bearer by virtue of the time it elapses for the bearer to respond to a stimulus. + PATOC:GVG + + + + + + + + quality + PATO:0001006 + obsolete absolute latency + true + + + + + + + + quality + PATO:0001007 + obsolete relative latency + true + + + + + + + + quality + PATO:0001008 + obsolete absolute latency value + true + + + + + + + + quality + PATO:0001009 + obsolete relative latency value + true + + + + + + + + quality + PATO:0001010 + obsolete relative intensity + true + + + + + + + + quality + PATO:0001011 + obsolete absolute intensity + true + + + + + + + + quality + PATO:0001012 + obsolete relative intensity value + true + + + + + + + + quality + PATO:0001013 + obsolete absolute intensity value + true + + + + + + + + quality + PATO:0001014 + obsolete absolute occurence + true + + + + + + + + quality + PATO:0001015 + obsolete relative occurence + true + + + + + + + + quality + PATO:0001016 + obsolete absolute occurence value + true + + + + + + + + quality + PATO:0001017 + obsolete relative occurence value + true + + + + + + + + + A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. + PATO:0002079 + Wikipedia:Physical_property + relational physical quality + quality + PATO:0001018 + + physical quality + + + + + A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. + PATOC:GVG + + + + + + + + + A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size. + quality + density + PATO:0001019 + + + mass density + + + + + A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size. + WordNet:WordNet + + + + + + + + + A structural quality inhering in a bearer by virtue of whether the bearer has been harmed or injured or spoiled. + quality + PATO:0001020 + + damage + + + + + A structural quality inhering in a bearer by virtue of whether the bearer has been harmed or injured or spoiled. + WordNet:WordNet + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's capacity to do work. + quality + PATO:0001021 + + + energy + + + + + A physical quality inhering in a bearer by virtue of the bearer's capacity to do work. + Wikipedia:http://en.wikipedia.org/wiki/Energy + + + + + + + + + A physical quality inhering in a bearer by virtue of the amount of momentum caused a certain force will produce over time. + quality + PATO:0001022 + + + impulse + + + + + A physical quality inhering in a bearer by virtue of the amount of momentum caused a certain force will produce over time. + url:http://www.wikipremed.com/home_resources/010104_momentum_concepts.pdf + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's velocity multiplied by its mass. + quality + PATO:0001023 + + + momentum + + + + + A physical quality inhering in a bearer by virtue of the bearer's velocity multiplied by its mass. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's rate of doing work. + quality + PATO:0001024 + + power + + + + + A physical quality inhering in a bearer by virtue of the bearer's rate of doing work. + Wikipedia:http://en.wikipedia.org/wiki/Power + + + + + + + + + A physical quality that inheres in a bearer by virtue of the bearer's amount of force per unit area it exerts. + quality + PATO:0001025 + + pressure + + + + + A physical quality that inheres in a bearer by virtue of the bearer's amount of force per unit area it exerts. + PATOC:GVG + + + + + + + + + A physical quality which is equal to the energy transferred by a force to a moving object. + W + quality + PATO:0001026 + + work + + + + + A physical quality which is equal to the energy transferred by a force to a moving object. + Wikipedia:http://en.wikipedia.org/wiki/Work + + + + + + + + quality + PATO:0001027 + obsolete physical quantity + true + + + + + + + + + A physical quality inhering in a bearer by virtue of the rate of change of the bearer's velocity in either speed or direction. + quality + PATO:0001028 + + + acceleration + + + + + A physical quality inhering in a bearer by virtue of the rate of change of the bearer's velocity in either speed or direction. + Wikipedia:http://en.wikipedia.org/wiki/Acceleration + + + + + + + + + A physical quality inhering in a bearer by virtue of ratio of the bearer's output to the bearer's input. + quality + PATO:0001029 + + efficiency + + + + + A physical quality inhering in a bearer by virtue of ratio of the bearer's output to the bearer's input. + WordNet:WordNet + + + + + + + + + A physical quality that exists by virtue of the rate of flow of the bearer across a given surface. + quality + PATO:0001030 + + + flux + + + + + A physical quality that exists by virtue of the rate of flow of the bearer across a given surface. + WordNet:WordNet + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to recover its size and shape after deformation in any way. + quality + PATO:0001031 + + + + elasticity + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to recover its size and shape after deformation in any way. + merriam-webster:merriam-webster + + + + + + + + + + true + + + + + + + + quality + PATO:0001033 + obsolete stiffness + true + + + + + + + + + A physical quality inhering in a bearer by virtue of the relative change in the bearer's length or the bearer's volume when being stretched or squashed. + quality + PATO:0001034 + + strain + + + + + A physical quality inhering in a bearer by virtue of the relative change in the bearer's length or the bearer's volume when being stretched or squashed. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum. + force amplitude + quality + PATO:0001035 + + + force + + + + + A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum. + thesaurus.maths:thesaurus.maths + + + + + + + + quality + PATO:0001036 + obsolete relative life span + true + + + + + + + + quality + PATO:0001037 + obsolete absolute life span + true + + + + + + + + quality + PATO:0001038 + obsolete ratio + true + + + + + + + + quality + PATO:0001039 + obsolete absolute ratio + true + + + + + + + + quality + PATO:0001040 + obsolete relative ratio + true + + + + + + + + quality + PATO:0001041 + obsolete relative amplitude + true + + + + + + + + quality + PATO:0001042 + obsolete absolute amplitude + true + + + + + + + + + A quality inhering in an entity by virtue of the bearer's propensity to resist an external stimulus. + + susceptibility + quality + PATO:0001043 + + + + susceptibility toward + + + + + A quality inhering in an entity by virtue of the bearer's propensity to resist an external stimulus. + PATOC:GVG + + + + + + + + quality + PATO:0001044 + obsolete absolute power + true + + + + + + + + quality + PATO:0001045 + obsolete relative power + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus. + + resistance + quality + PATO:0001046 + + + + + resistance to + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus. + PATOC:GVG + + + + + + + + quality + PATO:0001047 + obsolete absolute resistance + true + + + + + + + + quality + PATO:0001048 + obsolete relative resistance + true + + + + + + + + quality + PATO:0001049 + obsolete absolute susceptibility + true + + + + + + + + quality + PATO:0001050 + obsolete relative susceptibility + true + + + + + + + + + An angle which is less than 90 degrees. + quality + PATO:0001051 + + + acute angle to + + + + + An angle which is less than 90 degrees. + thesaurus.maths:thesaurus.maths + + + + + + + + + An angle which is between 90 degrees and 180 degrees to another entity. + quality + PATO:0001052 + + + obtuse angle to + + + + + An angle which is between 90 degrees and 180 degrees to another entity. + thesaurus.maths:thesaurus.maths + + + + + + + + + An angle which is less than 180 degrees to another entity. + quality + PATO:0001053 + + + convex angle to + + + + + An angle which is less than 180 degrees to another entity. + maths.org:maths.org + + + + + + + + + A convex angle that is inside two adjacent sides of a polygon. + quality + PATO:0001054 + + + internal angle + + + + + A convex angle that is inside two adjacent sides of a polygon. + PATOC:GVG + + + + + + + + + An angular placement quality inhering in a bearer by virtue of the bearer's placement at an angle that is greater than 180 degrees but less than 360 degrees to another entity. + quality + PATO:0001055 + + + reflex angle to + + + + + An angular placement quality inhering in a bearer by virtue of the bearer's placement at an angle that is greater than 180 degrees but less than 360 degrees to another entity. + thesaurus.maths:thesaurus.maths + + + + + + + + quality + PATO:0001056 + obsolete number + true + + + + + + + + quality + PATO:0001057 + obsolete relative acceleration + true + + + + + + + + quality + PATO:0001058 + obsolete absolute acceleration + true + + + + + + + + quality + PATO:0001059 + obsolete relative efficiency + true + + + + + + + + quality + PATO:0001060 + obsolete absolute efficiency + true + + + + + + + + quality + PATO:0001061 + obsolete relative elasticity + true + + + + + + + + quality + PATO:0001062 + obsolete absolute elasticity + true + + + + + + + + quality + PATO:0001063 + obsolete relative flux + true + + + + + + + + quality + PATO:0001064 + obsolete absolute flux + true + + + + + + + + quality + PATO:0001065 + obsolete relative stiffness + true + + + + + + + + quality + PATO:0001066 + obsolete absolute stiffness + true + + + + + + + + quality + PATO:0001067 + obsolete absolute strain + true + + + + + + + + quality + PATO:0001068 + obsolete relative strain + true + + + + + + + + quality + PATO:0001069 + obsolete relative density + true + + + + + + + + quality + PATO:0001070 + obsolete absolute density + true + + + + + + + + quality + PATO:0001071 + obsolete relative energy + true + + + + + + + + quality + PATO:0001072 + obsolete absolute energy + true + + + + + + + + quality + PATO:0001073 + obsolete relative impulse + true + + + + + + + + quality + PATO:0001074 + obsolete absolute impulse + true + + + + + + + + quality + PATO:0001075 + obsolete absolute momentum + true + + + + + + + + quality + PATO:0001076 + obsolete relative momentum + true + + + + + + + + quality + PATO:0001077 + obsolete absolute pressure + true + + + + + + + + quality + PATO:0001078 + obsolete relative pressure + true + + + + + + + + quality + PATO:0001079 + obsolete absolute work + true + + + + + + + + quality + PATO:0001080 + obsolete relative work + true + + + + + + + + quality + PATO:0001081 + obsolete physical measure value + true + + + + + + + + quality + PATO:0001082 + obsolete damage value + true + + + + + + + + quality + PATO:0001083 + obsolete acceleration value + true + + + + + + + + quality + PATO:0001084 + obsolete relative acceleration value + true + + + + + + + + quality + PATO:0001085 + obsolete absolute acceleration value + true + + + + + + + + quality + PATO:0001086 + obsolete efficiency value + true + + + + + + + + quality + PATO:0001087 + obsolete relative efficiency value + true + + + + + + + + quality + PATO:0001088 + obsolete absolute efficiency value + true + + + + + + + + quality + PATO:0001089 + obsolete elasticity value + true + + + + + + + + quality + PATO:0001090 + obsolete absolute elasticity value + true + + + + + + + + quality + PATO:0001091 + obsolete relative elasticity value + true + + + + + + + + quality + PATO:0001092 + obsolete flux value + true + + + + + + + + quality + PATO:0001093 + obsolete relative flux value + true + + + + + + + + quality + PATO:0001094 + obsolete absolute flux value + true + + + + + + + + quality + PATO:0001095 + obsolete force value + true + + + + + + + + quality + PATO:0001096 + obsolete absolute force value + true + + + + + + + + quality + PATO:0001097 + obsolete relative force value + true + + + + + + + + quality + PATO:0001098 + obsolete absolute force + true + + + + + + + + quality + PATO:0001099 + obsolete relative force + true + + + + + + + + quality + PATO:0001100 + obsolete position value + true + + + + + + + + quality + PATO:0001101 + obsolete stiffness value + true + + + + + + + + quality + PATO:0001102 + obsolete absolute stiffness value + true + + + + + + + + quality + PATO:0001103 + obsolete relative stiffness value + true + + + + + + + + quality + PATO:0001104 + obsolete strain value + true + + + + + + + + quality + PATO:0001105 + obsolete absolute strain value + true + + + + + + + + quality + PATO:0001106 + obsolete relative strain value + true + + + + + + + + quality + PATO:0001107 + obsolete density value + true + + + + + + + + quality + PATO:0001108 + obsolete relative amplitude value + true + + + + + + + + quality + PATO:0001109 + obsolete absolute amplitude value + true + + + + + + + + quality + PATO:0001110 + obsolete absolute density value + true + + + + + + + + quality + PATO:0001111 + obsolete relative density value + true + + + + + + + + quality + PATO:0001112 + obsolete energy value + true + + + + + + + + quality + PATO:0001113 + obsolete absolute energy value + true + + + + + + + + quality + PATO:0001114 + obsolete relative energy value + true + + + + + + + + quality + PATO:0001115 + obsolete impulse value + true + + + + + + + + quality + PATO:0001116 + obsolete relative impulse value + true + + + + + + + + quality + PATO:0001117 + obsolete absolute impulse value + true + + + + + + + + quality + PATO:0001118 + obsolete momentum value + true + + + + + + + + quality + PATO:0001119 + obsolete absolute momentum value + true + + + + + + + + quality + PATO:0001120 + obsolete relative momentum value + true + + + + + + + + quality + PATO:0001121 + obsolete power value + true + + + + + + + + quality + PATO:0001122 + obsolete absolute power value + true + + + + + + + + quality + PATO:0001123 + obsolete relative power value + true + + + + + + + + quality + PATO:0001124 + obsolete pressure value + true + + + + + + + + quality + PATO:0001125 + obsolete absolute pressure value + true + + + + + + + + quality + PATO:0001126 + obsolete relative pressure value + true + + + + + + + + quality + PATO:0001127 + obsolete work value + true + + + + + + + + quality + PATO:0001128 + obsolete absolute work value + true + + + + + + + + quality + PATO:0001129 + obsolete relative work value + true + + + + + + + + quality + PATO:0001130 + obsolete ratio value + true + + + + + + + + quality + PATO:0001131 + obsolete absolute ratio value + true + + + + + + + + quality + PATO:0001132 + obsolete relative ratio value + true + + + + + + + + quality + PATO:0001133 + obsolete immunoglobulin concentration + true + + + + + + + + quality + PATO:0001134 + obsolete ig a concentration + true + + + + + + + + quality + PATO:0001135 + obsolete ig d concentration + true + + + + + + + + quality + PATO:0001136 + obsolete ig e concentration + true + + + + + + + + quality + PATO:0001137 + obsolete ig g concentration + true + + + + + + + + quality + PATO:0001138 + obsolete ig m concentration + true + + + + + + + + quality + PATO:0001139 + obsolete urine glucose composition + true + + + + + + + + quality + PATO:0001140 + obsolete immunoglobulin concentration value + true + + + + + + + + quality + PATO:0001141 + obsolete ig a concentration value + true + + + + + + + + quality + PATO:0001142 + obsolete ig d concentration value + true + + + + + + + + quality + PATO:0001143 + obsolete ig e concentration value + true + + + + + + + + quality + PATO:0001144 + obsolete ig g concentration value + true + + + + + + + + quality + PATO:0001145 + obsolete ig m concentration value + true + + + + + + + + quality + PATO:0001146 + obsolete resistance value + true + + + + + + + + quality + PATO:0001147 + obsolete absolute resistance value + true + + + + + + + + quality + PATO:0001148 + obsolete relative resistance value + true + + + + + + + + quality + PATO:0001149 + obsolete susceptibility value + true + + + + + + + + quality + PATO:0001150 + obsolete absolute susceptibility value + true + + + + + + + + quality + PATO:0001151 + obsolete relative susceptibility value + true + + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus. + + susceptible + quality + PATO:0001152 + + + + susceptible toward + + + + + A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus. + + insusceptible + quality + PATO:0001153 + + + + insusceptible toward + + + + + A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus. + PATO:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width. + + quality + PATO:0001154 + + elongated + + + + + A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width. + WordNet:WordNet + + + + + + + + quality + PATO:0001155 + obsolete absolute concentration + true + + + + + + + + quality + PATO:0001156 + obsolete relative concentration + true + + + + + + + + quality + PATO:0001157 + obsolete absolute concentration value + true + + + + + + + + quality + PATO:0001158 + obsolete relative concentration value + true + + + + + + + + + A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration. + quality + PATO:0001159 + + + concentrated + + + + + A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration. + PATOC:GVG + + + + + + + + quality + PATO:0001160 + obsolete unconcentrated + true + + + + + + + + + A concentration which relatively low. + quality + PATO:0001161 + + + diluted + + + + + A concentration which relatively low. + PATOC:GVG + + + + + + + + + + A concentration which is higher relative to the normal or average. + + high concentration + quality + PATO:0001162 + + + increased concentration + + + + + A concentration which is higher relative to the normal or average. + PATOC:GVG + + + + + + + + + + A concentration which is lower relative to the normal or average. + + low concentration + quality + PATO:0001163 + + + decreased concentration + + + + + A concentration which is lower relative to the normal or average. + PATOC:GVG + + + + + + + + + A physical quality which inheres in a bearer by virtue of the bearer's exhibiting density. + quality + PATO:0001164 + + + dense + + + + + A physical quality which inheres in a bearer by virtue of the bearer's exhibiting density. + PATOC:GVG + + + + + + + + quality + PATO:0001165 + obsolete urine enzyme composition value + true + + + + + + + + quality + PATO:0001166 + obsolete urine enzyme composition + true + + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired. + + quality + PATO:0001167 + + damaged + + + + + A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired. + WordNet:WordNet + + + + + + + + + A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled. + + quality + PATO:0001168 + + undamaged + + + + + A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled. + WordNet:WordNet + + + + + + + + + + true + + + + + + + + quality + PATO:0001170 + obsolete numerical value + true + + + + + + + + + + An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way. + + quality + PATO:0001171 + + + + elastic + + + + + An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way. + merriam-webster:merriam-webster + + + + + + + + + An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way. + + quality + PATO:0001172 + + + + inelastic + + + + + An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way. + merriam-webster:merriam-webster + + + + + + + + quality + PATO:0001173 + obsolete urine glucose composition value + true + + + + + + + + quality + PATO:0001174 + obsolete urine composition + true + + + + + + + + quality + PATO:0001175 + obsolete urine composition + true + + + + + + + + quality + PATO:0001176 + obsolete deaf + true + + + + + + + + quality + PATO:0001177 + obsolete blind + true + + + + + + + + + A resistance quality inhering in a bearer by virtue of the bearer's resistance to a stimulus. + resistant + quality + PATO:0001178 + + + + resistant to + + + + + A resistance quality inhering in a bearer by virtue of the bearer's resistance to a stimulus. + PATOC:GVG + + + + + + + + quality + PATO:0001179 + obsolete immune + true + + + + + + + + quality + PATO:0001180 + obsolete relative response + true + + + + + + + + quality + PATO:0001181 + obsolete absolute response + true + + + + + + + + quality + PATO:0001182 + obsolete relative response + true + + + + + + + + quality + PATO:0001183 + obsolete absolute response value + true + + + + + + + + quality + PATO:0001184 + obsolete maturity value + true + + + + + + + + + A maturity quality inhering in a bearer by virtue of the bearer's indirect development, undergoing metamorphosis. + quality + PATO:0001185 + + larval + + + + + A maturity quality inhering in a bearer by virtue of the bearer's indirect development, undergoing metamorphosis. + Wikipedia:http://en.wikipedia.org/wiki/Larval + + + + + + + + + A maturity quality inhering in a bearer by virtue of the bearer's being at the age immediately before puberty. + quality + PATO:0001186 + + prepubescent + + + + + A maturity quality inhering in a bearer by virtue of the bearer's being at the age immediately before puberty. + WordNet:WordNet + + + + + + + + + A maturity quality inhering in a insect by virtue of the bearer's being in the chrysalis (cocoon) or post larval stage. + quality + PATO:0001187 + + pupal + + + + + A maturity quality inhering in a insect by virtue of the bearer's being in the chrysalis (cocoon) or post larval stage. + WordNet:WordNet + + + + + + + + + A maturity quality inhering in a bearer by virtue of the bearer's being in an inactive stage in the development of some insects, between the larval and the pupal stages. + quality + PATO:0001188 + + prepupal + + + + + A maturity quality inhering in a bearer by virtue of the bearer's being in an inactive stage in the development of some insects, between the larval and the pupal stages. + WordNet:WordNet + + + + + + + + + A maturity quality inhering in a bearer by virtue of the bearer's being between the onset of puberty and maturity. + quality + PATO:0001189 + + + adolescent + + + + + A maturity quality inhering in a bearer by virtue of the bearer's being between the onset of puberty and maturity. + WordNet:WordNet + + + + + + + + + A maturity quality inhering in a bearer by virtue the bearer's being not fully grown or developed. + quality + PATO:0001190 + + + juvenile + + + + + A maturity quality inhering in a bearer by virtue the bearer's being not fully grown or developed. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the middle relative to another entity. + quality + PATO:0001191 + + + + medial to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the middle relative to another entity. + PATOC:nw + + + + + + + + + + A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent. + + hyperresponsive + increased responsivity + quality + PATO:0001192 + + + + hyperresponsive to + + + + + A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the side relative to another entity. + lateral + quality + PATO:0001193 + + + + lateral to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the side relative to another entity. + PATOC:GVG + + + + + + + + + + A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent. + + decreased responsivity + hyporesponsive + quality + PATO:0001194 + + + + hyporesponsive to + + + + + A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located more centrally than another entity. + quality + PATO:0001195 + + + + proximal to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located more centrally than another entity. + PATOC:nw + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the abdomen of an organism relative to another entity. + anterior_ to + quality + PATO:0001196 + + + + ventral to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the abdomen of an organism relative to another entity. + PATOC:nw + + + + + + + + quality + PATO:0001197 + obsolete modified direction + true + + + + + + + + quality + PATO:0001198 + obsolete unmodified direction + true + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being narrow, with the two opposite margins parallel. + quality + PATO:0001199 + + + + linear + + + + + A shape quality inhering in a bearer by virtue of the bearer's being narrow, with the two opposite margins parallel. + ISBN:0881923214 + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter T. + quality + PATO:0001200 + + + T-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter T. + WordNet:WordNet + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter Y. + quality + PATO:0001201 + + + Y-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter Y. + WordNet:WordNet + + + + + + + + + + true + + + + + + + + + + true + + + + + + + + quality + PATO:0001204 + + obsolete not enlarged + true + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having toothlike projections in the margin. + dentate + toothed + quality + PATO:0001205 + + + + dentated + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having toothlike projections in the margin. + WordNet:WordNet + + + + + + + + + A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex. + + serrate + quality + PATO:0001206 + + + + serrated + + + + + A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex. + ISBN:0881923214 + + + + + + + + quality + PATO:0001207 + obsolete absolute compatability + true + + + + + + + + + + An odor quality inhering in a bearer by virtue of the bearer's lacking odour. + quality + PATO:0001208 + + odorless + + + + + An odor quality inhering in a bearer by virtue of the bearer's lacking odour. + PATOC:GVG + + + + + + + + quality + PATO:0001209 + obsolete absolute function + true + + + + + + + + quality + PATO:0001210 + obsolete plane_angle_quantity + true + + + + + + + + quality + PATO:0001211 + obsolete solid_angle_quantity + true + + + + + + + + quality + PATO:0001212 + obsolete length_unit + true + + + + + + + + quality + PATO:0001213 + obsolete mass_unit + true + + + + + + + + quality + PATO:0001214 + obsolete temparature_unit + true + + + + + + + + quality + PATO:0001215 + obsolete time_unit + true + + + + + + + + quality + PATO:0001216 + obsolete volume_unit + true + + + + + + + + quality + PATO:0001217 + obsolete energy_unit + true + + + + + + + + quality + PATO:0001218 + obsolete substance_unit + true + + + + + + + + quality + PATO:0001219 + obsolete area_unit + true + + + + + + + + quality + PATO:0001220 + obsolete angle_unit + true + + + + + + + + quality + PATO:0001221 + obsolete plane_angle_unit + true + + + + + + + + quality + PATO:0001222 + obsolete solid_angle_unit + true + + + + + + + + quality + PATO:0001223 + obsolete quantitative value + true + + + + + + + + quality + PATO:0001224 + obsolete real number + true + + + + + + + + quality + PATO:0001225 + obsolete relational number + true + + + + + + + + + + true + + + + + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change. + + variable + quality + PATO:0001227 + + + variant + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change. + Dictionary:http://dictionary.reference.com/ + + + + + + + + quality + PATO:0001228 + obsolete dull + true + + + + + + + + + A color saturation which is of high purity. + + bright + quality + vivid + PATO:0001229 + + high saturation + + + + + A color saturation which is of high purity. + PATOC:MAH + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's power or force. + quality + PATO:0001230 + + + strength + + + + + A quality inhering in a bearer by virtue of the bearer's power or force. + thefreedictionary.com:thefreedictionary.com + + + + + + + + quality + PATO:0001231 + obsolete cold insensitive + true + + + + + + + + quality + PATO:0001232 + obsolete heat insentive + true + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the back or upper surface of an organism relative to another entity. + + dorsal + posterior_to (human torso) + superior_to (human head) + quality + PATO:0001233 + + + dorsal to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the back or upper surface of an organism relative to another entity. + PATOC:nw + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity. + + distal + quality + PATO:0001234 + + + + distal to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity. + PATOC:nw + + + + + + + + quality + PATO:0001235 + obsolete strength value + true + + + + + + + + + + A quality which inheres in an process. + PATO:0001239 + PATO:0001240 + quality of a process + quality of occurrent + quality of process + relational quality of occurrent + quality + PATO:0001236 + See comments of relational quality of a physical entity. + process quality + + + + + A quality which inheres in an process. + PATOC:GVG + + + + + + + + + + true + + + + + + + + + + true + + + + + + + + + + true + + + + + + + + + + true + + + + + + + + + A quality which inheres in a continuant. + PATO:0001237 + PATO:0001238 + snap:Quality + monadic quality of a continuant + multiply inhering quality of a physical entity + quality of a continuant + quality of a single physical entity + quality of an object + quality of continuant + monadic quality of an object + monadic quality of continuant + quality + PATO:0001241 + Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles. + physical object quality + + + + + A quality which inheres in a continuant. + PATOC:GVG + + + + + + + + + A physical quality which is equal to the distance between repeating units of a wave pattern. + quality + PATO:0001242 + + + wavelength + + + + + A physical quality which is equal to the distance between repeating units of a wave pattern. + PATOC:GVG + + + + + + + + + A color consisting of blue hue and high brightness. + quality + PATO:0001243 + + + light blue + + + + + A color consisting of blue hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of blue hue and low brightness. + quality + PATO:0001244 + + + dark blue + + + + + A color consisting of blue hue and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of brown hue and low brightness. + quality + PATO:0001245 + + + dark brown + + + + + A color consisting of brown hue and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of brown hue and high brightness. + quality + PATO:0001246 + + + light brown + + + + + A color consisting of brown hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of cyan hue and high brightness. + quality + PATO:0001247 + + light cyan + + + + + A color consisting of cyan hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of cyan hue and low brightness. + quality + PATO:0001248 + + dark cyan + + + + + A color consisting of cyan hue and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of green hue and low brightness. + quality + PATO:0001249 + + + dark green + + + + + A color consisting of green hue and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of green hue and high brightness. + quality + PATO:0001250 + + + light green + + + + + A color consisting of green hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of grey color and low brightness. + quality + PATO:0001251 + + + dark grey + + + + + A color consisting of grey color and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of grey color and high brightness. + quality + PATO:0001252 + + + light grey + + + + + A color consisting of grey color and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of magenta color and high brightness. + quality + PATO:0001253 + + + light magenta + + + + + A color consisting of magenta color and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of magenta with low brightness. + quality + PATO:0001254 + + + dark magenta + + + + + A color consisting of magenta with low brightness. + PATOC:GVG + + + + + + + + + A color consisting of orange hue and high brightness. + quality + PATO:0001255 + + + light orange + + + + + A color consisting of orange hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of orange color and low brightness. + quality + PATO:0001256 + + + dark orange + + + + + A color consisting of orange color and low brightness. + PATOC:GVG + + + + + + + + + Pink color having high brightness and moderate saturation. + quality + PATO:0001257 + + + light deep pink + + + + + Pink color having high brightness and moderate saturation. + PATOC:GVG + + + + + + + + + Pink color having medium brightness and moderate saturation. + quality + PATO:0001258 + + + deep pink + + + + + Pink color having medium brightness and moderate saturation. + PATOC:MAH + + + + + + + + + A color consisting of purple color and low brightness. + quality + PATO:0001259 + + + dark purple + + + + + A color consisting of purple color and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of purple color and high brightness. + quality + PATO:0001260 + + + light purple + + + + + A color consisting of purple color and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of red hue and low brightness. + quality + PATO:0001261 + + + dark red + + + + + A color consisting of red hue and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of red hue and high brightness. + quality + PATO:0001262 + + + light red + + + + + A color consisting of red hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of yellow hue and low brightness. + quality + PATO:0001263 + + + dark yellow + + + + + A color consisting of yellow hue and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of yellow hue and high brightness. + quality + blond + PATO:0001264 + + + light yellow + + + + + A color consisting of yellow hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of blue hue and high saturation. + quality + bright blue + PATO:0001265 + + + saturated blue + + + + + A color consisting of blue hue and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of blue hue and low saturation. + pale blue + quality + PATO:0001266 + + desaturated blue + + + + + A color consisting of blue hue and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of brown hue and high saturation. + quality + bright brown + PATO:0001267 + + saturated brown + + + + + A color consisting of brown hue and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of brown hue and low saturation. + pale brown + quality + PATO:0001268 + + desaturated brown + + + + + A color consisting of brown hue and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of cyan colour and high saturation. + quality + bright cyan + PATO:0001269 + + saturated cyan + + + + + A color consisting of cyan colour and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of cyan colour and low saturation. + pale cyan + quality + PATO:0001270 + + desaturated cyan + + + + + A color consisting of cyan colour and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of green hue and high saturation. + quality + bright green + PATO:0001271 + + saturated green + + + + + A color consisting of green hue and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of green hue and low saturation. + pale green + quality + PATO:0001272 + + desaturated green + + + + + A color consisting of green hue and low saturation. + PATOC:GVG + + + + + + + + A color consisting of grey color and high saturation. + quality + PATO:0001273 + + obsolete bright grey + true + + + + + A color consisting of grey color and high saturation. + PATOC:GVG + + + + + + + + A color consisting of grey color and low saturation. + quality + PATO:0001274 + + obsolete pale grey + true + + + + + A color consisting of grey color and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of magenta color and high saturation. + quality + bright magenta + PATO:0001275 + + saturated magenta + + + + + A color consisting of magenta color and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of magenta color and low saturation. + pale magenta + quality + PATO:0001276 + + desaturated magenta + + + + + A color consisting of magenta color and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of orange hue and high saturation. + quality + bright orange + PATO:0001277 + + saturated orange + + + + + A color consisting of orange hue and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of orange hue and low saturation. + pale orange + quality + PATO:0001278 + + desaturated orange + + + + + A color consisting of orange hue and low saturation. + PATOC:GVG + + + + + + + + + + true + + + + + + + + + Pink color having medium brightness and low saturation. + PATO:0001279 + quality + bright pink + PATO:0001280 + + + dark pale pink + + + + + Pink color having medium brightness and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of purple color and high saturation. + quality + bright purple + PATO:0001281 + + saturated purple + + + + + A color consisting of purple color and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of purple color and low saturation. + pale purple + quality + PATO:0001282 + + desaturated purple + + + + + A color consisting of purple color and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of red hue and high saturation. + quality + bright red + PATO:0001283 + + + saturated red + + + + + A color consisting of red hue and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of red hue and low saturation. + pale red + quality + PATO:0001284 + + desaturated red + + + + + A color consisting of red hue and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of yellow hue and high saturation. + quality + bright yellow + PATO:0001285 + + saturated yellow + + + + + A color consisting of yellow hue and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of yellow hue and low saturation. + pale yellow + quality + PATO:0001286 + + desaturated yellow + + + + + A color consisting of yellow hue and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of red and brown hue. + quality + PATO:0001287 + + + red brown + + + + + A color consisting of red and brown hue. + PATOC:GVG + + + + + + + + + A color consisting of red and brown hue and low brightness. + quality + PATO:0001288 + + + dark red brown + + + + + A color consisting of red and brown hue and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of red and brown hue and high brightness. + quality + PATO:0001289 + + + light red brown + + + + + A color consisting of red and brown hue and high brightness. + PATOC:GVG + + + + + + + + + A fluorescence quality inhering in a bearer by virtue of emitting light during exposure to radiation from an external source. + quality + PATO:0001290 + + fluorescent + + + + + A fluorescence quality inhering in a bearer by virtue of emitting light during exposure to radiation from an external source. + web:www.thefreedictionary.com/ + + + + + + + + + A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation. + quality + PATO:0001291 + + electromagnetic (EM) radiation quality + + + + + A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation. + Wikipedia:http://en.wikipedia.org/wiki/Electromagnetic_radiation + + + + + + + + + An EM radiation quality that is independent of the EM wavelength range. + quality + PATO:0001292 + + full-spectrum EM radiation quality + + + + + An EM radiation quality that is independent of the EM wavelength range. + PATOC:GVG + + + + + + + + + A scalar EM radiation quality which obtains by the capacity of the bearer to retain radiation. + quality + PATO:0001293 + + absorption quality + + + + + A scalar EM radiation quality which obtains by the capacity of the bearer to retain radiation. + PATOC:GVG + + + + + + + + + A scalar EM radiation quality which obtains by the capacity of the bearer to scatter or reflect radiation. + quality + PATO:0001294 + + radiation reflective quality + + + + + A scalar EM radiation quality which obtains by the capacity of the bearer to scatter or reflect radiation. + PATOC:GVG + + + + + + + + + A reflective quality restricted to a particular wavelength. + quality + PATO:0001295 + + Typically used for light, but also applied to full EM spectrum. + albedo + + + + + A reflective quality restricted to a particular wavelength. + PATOC:cjm + + + + + + + + + A scalar optical quality which obtains by the magnitude of the light emitted by the bearer. + quality + PATO:0001296 + + luminous flux + + + + + A scalar optical quality which obtains by the magnitude of the light emitted by the bearer. + PATOC:GVG + + + + + + + + + A radiation reflective quality inhering in a bearer by virtue of the ratio of the energy of a wave reflected from its surface to the energy possessed by the wave striking the bearer's surface. + quality + PATO:0001297 + + reflectivity + + + + + A radiation reflective quality inhering in a bearer by virtue of the ratio of the energy of a wave reflected from its surface to the energy possessed by the wave striking the bearer's surface. + PATOC:GVG + + + + + + + + + A fluorescence in which the emittence continues after the absorption has ceased. + quality + PATO:0001298 + + phosphorescence + + + + + A fluorescence in which the emittence continues after the absorption has ceased. + PATOC:GVG + + + + + + + + + A scalar EM radiation quality which obtains by the capacity of the bearer to emit radiation. + quality + PATO:0001299 + + radiation emitting quality + + + + + A scalar EM radiation quality which obtains by the capacity of the bearer to emit radiation. + PATOC:GVG + + + + + + + + + An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light. + quality + PATO:0001300 + + optical quality + + + + + An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light. + PATOC:GVG + + + + + + + + + An optical quality that is the mixture, purity or pattern of wavelengths of light perceived by the observer. + quality + PATO:0001301 + + chromatic property + + + + + An optical quality that is the mixture, purity or pattern of wavelengths of light perceived by the observer. + PATOC:MAH + + + + + + + + + A color consisting of red and orange hue with a slight amount of gray. + quality + PATO:0001302 + + + vermilion + + + + + A color consisting of red and orange hue with a slight amount of gray. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing. + quality + variability of a physical quality + PATO:0001303 + + variability + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing. + Dictionary:http://dictionary.reference.com/ + + + + + + + + + + + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change. + quality + PATO:0001304 + + variability of temperature + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change. + PATO:GVG + + + + + + + + + + A temperature which is relatively high. + + PATO:0000678 + high temperature + hot + quality + PATO:0001305 + + increased temperature + + + + + A temperature which is relatively high. + PATOC:GVG + + + + + + + + + + A temperature which is relatively low. + + PATO:0000677 + cold + low temperature + quality + PATO:0001306 + + decreased temperature + + + + + A temperature which is relatively low. + PATOC:GVG + + + + + + + + + + A variability of temperature which is relatively low. + + low variability of temperature + quality + PATO:0001307 + + decreased variability of temperature + + + + + A variability of temperature which is relatively low. + PATOC:GVG + + + + + + + + + + A variability of temperature which is relatively high. + + high variability of temperature + quality + PATO:0001308 + + increased variability of temperature + + + + + A variability of temperature which is relatively high. + PATOC:GVG + + + + + + + + + A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point. + PATO:0000081 + period + quality + time + PATO:0001309 + + + duration + + + + + A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point. + PATOC:mellybelly + + + + + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's duration of exhibition of thermal energy. + quality + PATO:0001310 + + TODO: obsolete? I don't know what this means. + duration of temperature + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's duration of exhibition of thermal energy. + PATOC:GVG + + + + + + + + + + A duration of temperature which is lesser relative to the normal or average enduring or continuing in time. + + quality + PATO:0001311 + + decreased duration of temperature + + + + + A duration of temperature which is lesser relative to the normal or average enduring or continuing in time. + PATOC:GVG + + + + + + + + + + A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time. + + high duration of temperature + quality + PATO:0001312 + + increased duration of temperature + + + + + A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time. + PATOC:GVG + + + + + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature. + + quality + PATO:0001313 + + invariant temperature + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature. + PATO:GVG + + + + + + + + + A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature. + + quality + PATO:0001314 + + variant temperature + + + + + A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature. + PATO:GVG + + + + + + + + + A temperature which is increased by a low degree. + quality + PATO:0001315 + + mild increased temperature + + + + + A temperature which is increased by a low degree. + PATOC:GVG + + + + + + + + + A temperature which is increased by a medium degree. + quality + PATO:0001316 + + moderate increased temperature + + + + + A temperature which is increased by a medium degree. + PATOC:GVG + + + + + + + + + A temperature which is increased by a high degree. + quality + PATO:0001317 + + severe increased temperature + + + + + A temperature which is increased by a high degree. + PATOC:GVG + + + + + + + + + + A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli. + + quality + PATO:0001318 + + + + indiscriminate + + + + + A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli. + PATOC:GVG + + + + + + + + + A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli. + + quality + PATO:0001319 + + + + discriminate + + + + + A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli. + PATOC:GVG + + + + + + + + + A pilosity quality of being covered with short hairs or soft down. + quality + PATO:0001320 + + pubescent hair + + + + + A pilosity quality of being covered with short hairs or soft down. + PATOC:GVG + + + + + + + + + An angle which is 90 degrees to another entity. + quality + PATO:0001321 + + + right angle to + + + + + An angle which is 90 degrees to another entity. + thesaurus.math:thesaurus.math + + + + + + + + + An angle which is 180 degrees to another entity. + quality + PATO:0001322 + + + TODO: decide on correct parentage. + straight angle to + + + + + An angle which is 180 degrees to another entity. + thesaurus.maths:thesaurus.maths + + + + + + + + + A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent. + quality + PATO:0001323 + + + + area + + + + + A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent. + Wikipedia:http://en.wikipedia.org/wiki/Area + + + + + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's being symmetric about a plane running from its frontal end to its caudal end (head to tail), and has nearly identical right and left halves. + left-right symmetry + quality + pennate + PATO:0001324 + + + bilateral symmetry + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's being symmetric about a plane running from its frontal end to its caudal end (head to tail), and has nearly identical right and left halves. + Wikipedia:http://en.wikipedia.org/wiki/Bilateral_symmetry + + + + + pennate + https://orcid.org/0000-0001-5208-3432 + https://orcid.org/0000-0002-2908-3327 + + + + + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's having equal proportion around a central point or axis. + centric + quality + PATO:0001325 + + + radial symmetry + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's having equal proportion around a central point or axis. + PATOC:GVG + + + + + centric + https://orcid.org/0000-0001-5208-3432 + https://orcid.org/0000-0002-2908-3327 + + + + + + + + quality + PATO:0001326 + + obsolete left-right symmetry + true + + + + + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by only one longitudinal plane passing through the axis. + quality + PATO:0001327 + + + zygomorphic + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by only one longitudinal plane passing through the axis. + WordNet:WordNet + + + + + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by any longitudinal plane passing through the axis. + quality + PATO:0001328 + + + actinomorphic + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by any longitudinal plane passing through the axis. + WordNet:WordNet + + + + + + + + + + A flavor quality inhering in a bearer by virtue of the bearer's having flavour. + quality + PATO:0001329 + + + flavourful + + + + + A flavor quality inhering in a bearer by virtue of the bearer's having flavour. + PATOC:GVG + + + + + + + + + A flavor quality inhering in a bearer by virtue of the bearer's lacking flavour. + quality + PATO:0001330 + + + flavourless + + + + + A flavor quality inhering in a bearer by virtue of the bearer's lacking flavour. + PATOC:GVG + + + + + + + + + An odor quality inhering in a bearer by virtue of the bearer's having odour. + quality + PATO:0001331 + + odorous + + + + + An odor quality inhering in a bearer by virtue of the bearer's having odour. + PATOC:GVG + + + + + + + + + A morphology quality inhering in a bearer by virtue of the bearer's lack of distinct morphology. + quality + PATO:0001332 + + + + amorphous + + + + + A morphology quality inhering in a bearer by virtue of the bearer's lack of distinct morphology. + PATOC:GVG + + + + + + + + + + A quality of a process which ends later than the natural end time. + quality + PATO:0001333 + + temporally extended + + + + + A quality of a process which ends later than the natural end time. + PATOC:melissa + + + + + + + + + A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. + quality + PATO:0001334 + + + + diameter + + + + + A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. + Wikipedia:http://en.wikipedia.org/wiki/Diameter + + + + + + + + + A mating type that indicates whether the F plasmid has integrated into the chromosome. + quality + PATO:0001335 + + bacterial mating type + + + + + A mating type that indicates whether the F plasmid has integrated into the chromosome. + MGED:MGED + + + + + + + + A biological sex quality inhering in an individual whose sex is unknown. + quality + PATO:0001336 + + Unknown is not a type of sex. + obsolete unknown sex + true + + + + + A biological sex quality inhering in an individual whose sex is unknown. + MGED:MGED + + + + + + + + + A yeast mating type. + quality + PATO:0001337 + + yeast mating type + + + + + A yeast mating type. + PATOC:GVG + + + + + + + + + A biological sex quality inhering in a population of multiple sexes. + quality + PATO:0001338 + + For example a mixture of females and male or males and hermaphrodites. + mixed sex + + + + + A biological sex quality inhering in a population of multiple sexes. + MGED:MGED + + + + + + + + + A composition quality inhering in an bearer by virtue of the bearer's homogeneity of a biomaterial. + quality + PATO:0001339 + + + biomaterial purity + + + + + A composition quality inhering in an bearer by virtue of the bearer's homogeneity of a biomaterial. + MGED:MGED + + + + + + + + + A biological sex quality inhering in an organism or a population with both male and female sexual organs in one individual. + intersex + quality + PATO:0001340 + + hermaphrodite + + + + + A biological sex quality inhering in an organism or a population with both male and female sexual organs in one individual. + MGED:MGED + + + + + + + + + A S. cerevisiae mating type cells that secrete a pheromone that in alpha haploids stimulates processes that lead to mating. + a + quality + PATO:0001341 + + a mating type (yeast) + + + + + A S. cerevisiae mating type cells that secrete a pheromone that in alpha haploids stimulates processes that lead to mating. + MGED:MGED + + + + + + + + + A S. cerevisiae mating type. + quality + PATO:0001342 + + Saccharomyces cerevisiae mating type + + + + + A S. cerevisiae mating type. + PATOC:GVG + + + + + + + + + A S. pombe mating type determined by the gene configuration on the mat1 locus. + quality + PATO:0001343 + + Schizosaccharomyces pombe mating type + + + + + A S. pombe mating type determined by the gene configuration on the mat1 locus. + PATOC:GVG + + + + + + + + + A S. cerevisiae mating type cells that secrete a pheromone that stimulates a haploids. + alpha + quality + PATO:0001344 + + alpha mating type (yeast) + + + + + A S. cerevisiae mating type cells that secrete a pheromone that stimulates a haploids. + MGED:MGED + + + + + + + + + A S. pombe mating type determined by the mat1-Mc and mat1-Mi on the mat1 locus. + M + h - + quality + PATO:0001345 + + h minus + + + + + A S. pombe mating type determined by the mat1-Mc and mat1-Mi on the mat1 locus. + PATOC:GVG + + + + + + + + + A S. pombe mating type determined by the mat1-Pc and mat1-Pi on the mat1 locus. + P + h+ + quality + PATO:0001346 + + h plus + + + + + A S. pombe mating type determined by the mat1-Pc and mat1-Pi on the mat1 locus. + PATOC:GVG + + + + + + + + + A bacterial mating type indicating the presence of F plasmid in a bacterial cell. + quality + PATO:0001347 + + F mating type + + + + + A bacterial mating type indicating the presence of F plasmid in a bacterial cell. + MGED:MGED + + + + + + + + + A bacterial mating type indicating the absence of F plasmid in a bacterial cell. + F- + quality + PATO:0001348 + + F minus mating type + + + + + A bacterial mating type indicating the absence of F plasmid in a bacterial cell. + MGED:MGED + + + + + + + + + A mating type that indicates that the F plasmid has integrated into the chromosome. + Hfr + quality + PATO:0001349 + + high frequency recombinant + + + + + A mating type that indicates that the F plasmid has integrated into the chromosome. + MGED:MGED + + + + + + + + + A physical quality inhering in a bearer by virtue of the rate of change of the bearer's angular velocity. + quality + PATO:0001350 + + + angular acceleration + + + + + A physical quality inhering in a bearer by virtue of the rate of change of the bearer's angular velocity. + Wikipedia:http://en.wikipedia.org/wiki/Angular_acceleration + + + + + + + + + A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given area. + quality + PATO:0001351 + + + area density + + + + + A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given area. + Wikipedia:http://en.wikipedia.org/wiki/Area_density + + + + + + + + + A density quality which is equal to the mass exerting an influence on a one-dimensional object. + quality + PATO:0001352 + + + linear density + + + + + A density quality which is equal to the mass exerting an influence on a one-dimensional object. + Wikipedia:http://en.wikipedia.org/wiki/Linear_density + + + + + + + + + A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given volume. + quality + PATO:0001353 + + + volumetric density + + + + + A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given volume. + Wikipedia:http://en.wikipedia.org/wiki/Mass_density + + + + + + + + + A optical quality inhering in a bearer by virtue of the bearer's exhibiting low opacity. + quality + PATO:0001354 + + translucent + + + + + A optical quality inhering in a bearer by virtue of the bearer's exhibiting low opacity. + PATOC:GVG + + + + + + + + + A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere. + + quality + PATO:0001355 + + + convex + + + + + A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere. + PATOC:GVG + + + + + + + + + A shape quality inhering in a cell by virtue of the bearer's ability to take on two or more different shapes during its life cycle. + quality + PATO:0001356 + + + + + pleomorphic + + + + + A shape quality inhering in a cell by virtue of the bearer's ability to take on two or more different shapes during its life cycle. + PATOC:GVG + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped like a cushion or has a marked convex cushion-like form. + quality + PATO:0001357 + + + pulvinate + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped like a cushion or has a marked convex cushion-like form. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having a knob or knoblike protuberance. + quality + PATO:0001358 + + + umbonate + + + + + A quality inhering in a bearer by virtue of the bearer's having a knob or knoblike protuberance. + PATOC:GVG + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having many wrinkles or creases on the surface. + quality + PATO:0001359 + + + + rugose + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having many wrinkles or creases on the surface. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having thin filamentous extensions at its edge. + quality + PATO:0001360 + + + filamentous + + + + + A shape quality inhering in a bearer by virtue of the bearer's having thin filamentous extensions at its edge. + PATOC:GVG + + + + + + + + + A texture quality inhering in a bearer by virtue of the bearer's being covered with warts or projections that resemble warts resulting in a hard rough surface. + quality + PATO:0001361 + + + warty + + + + + A texture quality inhering in a bearer by virtue of the bearer's being covered with warts or projections that resemble warts resulting in a hard rough surface. + PATOC:GVG + + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed. + + quality + PATO:0001362 + + + fragile + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed. + WordNet:WordNet + + + + + + + + + + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having root like extensions radiating from its center. + quality + PATO:0001364 + + rhizoidal + + + + + A quality inhering in a bearer by virtue of the bearer's having root like extensions radiating from its center. + PATOC:GVG + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having spines, thorns or similar thin projections on its surface. + quality + PATO:0001365 + + + spiny + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having spines, thorns or similar thin projections on its surface. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being small and resembling a point. + quality + PATO:0001366 + + + + punctiform + + + + + A shape quality inhering in a bearer by virtue of the bearer's being small and resembling a point. + PATOC:GVG + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes. + quality + PATO:0001367 + + + + lobate + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes. + PATOC:GVG + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having an irregularly toothed edge. + quality + jagged + PATO:0001368 + + + erose + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having an irregularly toothed edge. + PATOC:GVG + + + + + + + + + A shape quality inhering in a colony by virtue of the bearer's appearing above the medium surface with terraced edges. + quality + PATO:0001369 + + + raised + + + + + A shape quality inhering in a colony by virtue of the bearer's appearing above the medium surface with terraced edges. + PATOC:GVG + + + + + + + + + A coating quality which is sticky or clammy. + quality + PATO:0001370 + + viscid + + + + + A coating quality which is sticky or clammy. + PATOC:GVG + + + + + + + + + A composition quality inhering in an bearer by virtue of the bearer's consistency of mucus. + quality + mucinous + mucous + PATO:0001371 + + + mucoid + + + + + A composition quality inhering in an bearer by virtue of the bearer's consistency of mucus. + PATOC:GVG + + + + + + + + + A physical quality that inheres in propagating wave (light or sound) virtue of the bearer's change in direction when passing from one medium to another. + quality + PATO:0001372 + + + refractivity + + + + + A physical quality that inheres in propagating wave (light or sound) virtue of the bearer's change in direction when passing from one medium to another. + WordNet:WordNet + + + + + + + + + A reflectivity quality inhering in a bearer by virtue of the bearer's reflecting lots of light. + glossy + shiny + quality + PATO:0001373 + + glistening + + + + + A reflectivity quality inhering in a bearer by virtue of the bearer's reflecting lots of light. + PATOC:GVG + + + + + + + + + A cellular quality inhering in a bearer by virtue of the bearer's number of homologous sets of chromosomes in the nucleus or primary chromosome-containing compartment of the cell, each set essentially coding for all the biological traits of the organism. + quality + PATO:0001374 + + ploidy + + + + + A cellular quality inhering in a bearer by virtue of the bearer's number of homologous sets of chromosomes in the nucleus or primary chromosome-containing compartment of the cell, each set essentially coding for all the biological traits of the organism. + Wikipedia:http://en.wikipedia.org/wiki/Ploidy + + + + + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of homologous chromosomes. + quality + PATO:0001375 + + + haploid + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of homologous chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Haploid + + + + + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of unique homologous chromosomes. + quality + PATO:0001376 + + + monoploid + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of unique homologous chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Monoploid + + + + + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing more than two homologous sets of chromosomes. + quality + PATO:0001377 + + + polyploid + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing more than two homologous sets of chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Polyploid + + + + + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from a single species. + quality + PATO:0001378 + + + autopolyploid + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from a single species. + Wikipedia:http://en.wikipedia.org/wiki/Autopolyploid + + + + + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from different species. + quality + PATO:0001379 + + + allopolyploidy + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from different species. + Wikipedia:http://en.wikipedia.org/wiki/Allopolyploidy + + + + + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's having an ancient polyploid ancestor. + quality + PATO:0001380 + + paleopolyploid + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's having an ancient polyploid ancestor. + Wikipedia:http://en.wikipedia.org/wiki/Paleopolyploid + + + + + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing three homologous sets of chromosomes. + quality + PATO:0001381 + + + triploid + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing three homologous sets of chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Triploid + + + + + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes. + quality + PATO:0001382 + + + tetraploid + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Tetraploid + + + + + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing five homologous sets of chromosomes. + quality + PATO:0001383 + + + pentaploid + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing five homologous sets of chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Pentaploid + + + + + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes. + quality + PATO:0001384 + + + hexaploid + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Hexaploid + + + + + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing a non-integral multiple of the monoploid number, due to extra or missing chromosomes. + quality + PATO:0001385 + + + aneuploid + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing a non-integral multiple of the monoploid number, due to extra or missing chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Aneuploid + + + + + + + + + An aneuploidy quality inhering in a bearer by virtue of the bearer's containing only one chromosome from a pair in a cell's nucleus. + quality + PATO:0001386 + + + monosomy + + + + + An aneuploidy quality inhering in a bearer by virtue of the bearer's containing only one chromosome from a pair in a cell's nucleus. + Wikipedia:http://en.wikipedia.org/wiki/Monosomy + + + + + + + + + An aneuploidy quality inhering in a bearer by virtue of the bearer's containing only two chromosome from a pair in a cell's nucleus. + quality + PATO:0001387 + + + For diploid organisms, such as humans, it is the normal condition, whilst for organisms that are normally triploid or above, disomy is an aneuploidy. + disomy + + + + + An aneuploidy quality inhering in a bearer by virtue of the bearer's containing only two chromosome from a pair in a cell's nucleus. + Wikipedia:http://en.wikipedia.org/wiki/Disomy + + + + + + + + + A disomy quality inhering in a bearer by virtue of the bearer's containing two copies of the chromosome from one of the parents (with no contribution from the other parent). + quality + PATO:0001388 + + + uniparental disomy + + + + + A disomy quality inhering in a bearer by virtue of the bearer's containing two copies of the chromosome from one of the parents (with no contribution from the other parent). + Wikipedia:http://en.wikipedia.org/wiki/Uniparental_disomy + + + + + + + + + An aneuploidy quality inhering in a bearer by virtue of the bearer's containing three, instead of two, chromosomes of a particular numbered type in an organism. + quality + PATO:0001389 + + + trisomy + + + + + An aneuploidy quality inhering in a bearer by virtue of the bearer's containing three, instead of two, chromosomes of a particular numbered type in an organism. + Wikipedia:http://en.wikipedia.org/wiki/Trisomy + + + + + + + + + A trisomy quality inhering in a bearer when part of the bearer's extra chromosome is attached to one of the other chromosomes, or if one of the bearer's chromosomes has two copies of part of its chromosome. + quality + PATO:0001390 + + partial trisomy + + + + + A trisomy quality inhering in a bearer when part of the bearer's extra chromosome is attached to one of the other chromosomes, or if one of the bearer's chromosomes has two copies of part of its chromosome. + Wikipedia:http://en.wikipedia.org/wiki/Partial_trisomy + + + + + + + + + A trisomy quality inhering in a bearer by virtue of the bearer's having extra chromosomal material in only some of it's cells. + quality + PATO:0001391 + + + mosaic trisomy + + + + + A trisomy quality inhering in a bearer by virtue of the bearer's having extra chromosomal material in only some of it's cells. + PATOC:GVG + + + + + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's chromosome number being increased by endomitosis and for which the degree of ploidy is proportional to the number of times that endomitosis has taken place. + quality + PATO:0001392 + + + endopolyploid + + + + + A polyploidy quality inhering in a bearer by virtue of the bearer's chromosome number being increased by endomitosis and for which the degree of ploidy is proportional to the number of times that endomitosis has taken place. + Wikipedia:http://en.wikipedia.org/wiki/Endopolyploid + + + + + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing an integral multiple of the monoploid number, possibly excluding the sex-determining chromosomes. + quality + PATO:0001393 + + + euploid + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's containing an integral multiple of the monoploid number, possibly excluding the sex-determining chromosomes. + Wikipedia:http://en.wikipedia.org/wiki/Euploid + + + + + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's having two copies (homologs) of each chromosome, usually one from the mother and one from the father. + quality + PATO:0001394 + + + The exact number may be one or two different from the 2n number and still be classified as diploidy (although with aneuploidy). Nearly all mammals are diploid organisms, although all individuals have some small fracton of cells that are polyploidy. + diploid + + + + + A ploidy quality inhering in a bearer by virtue of the bearer's having two copies (homologs) of each chromosome, usually one from the mother and one from the father. + Wikipedia:http://en.wikipedia.org/wiki/Diploid + + + + + + + + + A diploidy quality inhering in a bearer in by virtue of belonging in a species whose one of the sexes has haploid cells and the other has diploid cells. + quality + PATO:0001395 + + + haplodiploid + + + + + A diploidy quality inhering in a bearer in by virtue of belonging in a species whose one of the sexes has haploid cells and the other has diploid cells. + Wikipedia:http://en.wikipedia.org/wiki/Haplodiploid + + + + + + + + + A monadic quality of continuant that exists at the cellular level of organisation. + quality + PATO:0001396 + cellular quality + + + + + A monadic quality of continuant that exists at the cellular level of organisation. + PATOC:GVG + + + + + + + + + A cellular quality that arises by virtue of whether the bearer's disposition to differentiate into one or more mature cell types. + quality + PATO:0001397 + + + cellular potency + + + + + A cellular quality that arises by virtue of whether the bearer's disposition to differentiate into one or more mature cell types. + PATOC:GVG + + + + + + + + + A cellular quality inhering in a bearer by virtue of the bearer's having the ability to go through numerous cycles of cell division while maintaining the undifferentiated state. + quality + PATO:0001398 + + + self-renewal + + + + + A cellular quality inhering in a bearer by virtue of the bearer's having the ability to go through numerous cycles of cell division while maintaining the undifferentiated state. + PATOC:GVG + + + + + + + + + A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers and extraembryonic cell types. + quality + PATO:0001399 + + + + totipotent + + + + + A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers and extraembryonic cell types. + Wikipedia:http://en.wikipedia.org/wiki/Totipotent + + + + + + + + + A cellular potency that is the capacity to produce only one differentiated cell type. + quality + PATO:0001400 + + + + Unipotent cells have the quality of self-renewal which distinguishes them from non-stem cells. + unipotent + + + + + A cellular potency that is the capacity to produce only one differentiated cell type. + Wikipedia:http://en.wikipedia.org/wiki/Unipotent + + + + + + + + + A cellular potency that is the capacity to form multiple differentiated cell types of a specific lineage and lack self renewing capacity. + quality + PATO:0001401 + + + + Less potent than multipotent, often thought of as precursor or progenitor cell status. + oligopotent + + + + + A cellular potency that is the capacity to form multiple differentiated cell types of a specific lineage and lack self renewing capacity. + PATOC:MAH + + + + + + + + + A cellular potency that is the capacity to form multiple differentiated cell types. + quality + PATO:0001402 + + + + multipotent + + + + + A cellular potency that is the capacity to form multiple differentiated cell types. + Wikipedia:http://en.wikipedia.org/wiki/Multipotent + + + + + + + + + A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers but not extraembryonic cell types. + quality + PATO:0001403 + + + + pluripotent + + + + + A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers but not extraembryonic cell types. + Wikipedia:http://en.wikipedia.org/wiki/Pluripotent + + + + + + + + + A cellular quality inhering in a bearer by virtue of bearer's number of nuclei. + quality + PATO:0001404 + + nucleate quality + + + + + A cellular quality inhering in a bearer by virtue of bearer's number of nuclei. + PATOC:GVG + + + + + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having no nucleus. + quality + PATO:0001405 + + + + anucleate + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having no nucleus. + Biology-online:Biology-online + + + + + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei. + quality + PATO:0001406 + + + + binucleate + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei. + Biology-online:Biology-online + + + + + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus. + quality + PATO:0001407 + + + + mononucleate + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus. + Biology-online:Biology-online + + + + + + + + + A cellular quality inhering in a bearer by virtue of the bearer's having thin, tail-like projections extending outwards from the cell body. + quality + PATO:0001408 + + + ciliatedness + + + + + A cellular quality inhering in a bearer by virtue of the bearer's having thin, tail-like projections extending outwards from the cell body. + Wikipedia:http://en.wikipedia.org/wiki/Ciliated + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's resembling a long tapered rod. + quality + PATO:0001409 + + + + spindle-shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's resembling a long tapered rod. + Biology-online:Biology-online + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel. + quality + PATO:0001410 + + + + striated + + + + + A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel. + Biology-online:Biology-online + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having distinct structure. + + quality + PATO:0001411 + + structured + + + + + A structural quality inhering in a bearer by virtue of the bearer's having distinct structure. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure. + + quality + PATO:0001412 + + unstructured + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the rate of the bearer's angular movement about an axis; the angle rotated in a given time. + quality + PATO:0001413 + + + angular velocity + + + + + A physical quality inhering in a bearer by virtue of the rate of the bearer's angular movement about an axis; the angle rotated in a given time. + Wikipedia:http://en.wikipedia.org/wiki/Angular_velocity + + + + + + + + + A physical quality inhering in a catalyst by virtue of the amount of the catalyst's action. + quality + PATO:0001414 + + + catalytic activity + + + + + A physical quality inhering in a catalyst by virtue of the amount of the catalyst's action. + PATOC:GVG + + + + + + + + + A quality inhering in a population by virtue of the proportion of its members that are ill at a given time. + quality + PATO:0001415 + + + morbidity + + + + + A quality inhering in a population by virtue of the proportion of its members that are ill at a given time. + PATOC:GVG + + + + + + + + + A duration which has regular start and/or end times. + + quality + PATO:0001416 + + regular duration + + + + + A duration which has regular start and/or end times. + PATOC:GVG + + + + + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times. + + quality + PATO:0001417 + + irregular duration + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times. + PATOC:melissa + + + + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's being deficient in alertness or activity. + quality + PATO:0001418 + + lethargic + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's being deficient in alertness or activity. + WordNet:WordNet + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge. + quality + PATO:0001419 + + + sharp + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to rise or float in a fluid medium such as water or air. + quality + PATO:0001420 + + + + buoyancy + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to rise or float in a fluid medium such as water or air. + PATOC:GVG + + + + + + + + + A viability quality inhering in a bearer by virtue of the bearer's condition before death. + quality + PATO:0001421 + + alive + + + + + A viability quality inhering in a bearer by virtue of the bearer's condition before death. + PATOC:GVG + + + + + + + + + A viability quality inhering in a bearer by virtue of the cessation of the bearer's life. + quality + PATO:0001422 + + dead + + + + + A viability quality inhering in a bearer by virtue of the cessation of the bearer's life. + PATOC:GVG + + + + + + + + + A reflectivity quality inhering in the bearer by virtue of the bearer's ability to refract light. + quality + PATO:0001423 + + + refractile + + + + + A reflectivity quality inhering in the bearer by virtue of the bearer's ability to refract light. + biology-online:biology-online + + + + + + + + + A color hue with very low wavelength of that portion of the visible spectrum lying between reddish blue or bluish purple, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 380 nanometers. + quality + PATO:0001424 + + + violet + + + + + A color hue with very low wavelength of that portion of the visible spectrum lying between reddish blue or bluish purple, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 380 nanometers. + Wikipedia:http://en.wikipedia.org/wiki/Violet + + + + + + + + + A color hue consisting of red hue and yellow hue and high brightness. + quality + PATO:0001425 + + rosy + + + + + A color hue consisting of red hue and yellow hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of purple and brown hue. + quality + PATO:0001426 + + + maroon + + + + + A color consisting of purple and brown hue. + Wikipedia:http://en.wikipedia.org/wiki/Maroon + + + + + + + + + A concentration quality inhering in compound by virtue of the bearer's tendency to act as a hydron donor. + quality + PATO:0001427 + + + compound acidity + + + + + A concentration quality inhering in compound by virtue of the bearer's tendency to act as a hydron donor. + chemicool:chemicool + + + + + + + + + A concentration quality inhering in a medium by virtue of the bearer's tendency to hydronate a specific reference base. + quality + PATO:0001428 + + + medium acidity + + + + + A concentration quality inhering in a medium by virtue of the bearer's tendency to hydronate a specific reference base. + chemicool:chemicool + + + + + + + + + An medium acidity quality inhering in a solution by virtue of the bearer's a high concentration of H+ ions. + quality + PATO:0001429 + + acidic + + + + + An medium acidity quality inhering in a solution by virtue of the bearer's a high concentration of H+ ions. + chemicool:chemicool + + + + + + + + + An medium acidity quality inhering in a solution by virtue of the bearer's a low concentration of H+ ions. + quality + PATO:0001430 + + alkaline + + + + + An medium acidity quality inhering in a solution by virtue of the bearer's a low concentration of H+ ions. + chemicool:chemicool + + + + + + + + + An emergent molecular quality that arises by virtue of the bearer's disposition to exhibit molecular attraction to another entity in contact. + adhesiveness + quality + stickiness + PATO:0001431 + + + + The definition is general enough to cover adhesion arising from different kinds of chemical bonding/forces, although for PATO this term will most commonly used for cellular adhesion. See also GO:0031589 "cell-substrate adhesion". + adhesivity + + + + + An emergent molecular quality that arises by virtue of the bearer's disposition to exhibit molecular attraction to another entity in contact. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's decomposition into component parts. + quality + PATO:0001432 + + decayed + + + + + A quality inhering in a bearer by virtue of the bearer's decomposition into component parts. + Medical-dictionary:Medical-dictionary + + + + + + + + + A quality of a single process which describes the growth of an organism, structure, or group of organisms. + PATO:0001489 + quality + growth quality of a process + growth timing quality + PATO:0001433 + + growth quality of occurrent + + + + + A quality of a single process which describes the growth of an organism, structure, or group of organisms. + PATOC:MAH + + + + + + + + + An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring. + quality + PATO:0001434 + reproductive quality + + + + + An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring. + WordNet:WordNet + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity. + quality + PATO:0001435 + + + attachment quality + + + + + A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity. + PATOC:GVG + + + + + + + + + An attachment quality inhering in a flower by virtue of the bearer's lacking a stalk, as in flowers or leaves that grow directly from the stem. + quality + PATO:0001436 + + + sessile (sensu botany) + + + + + An attachment quality inhering in a flower by virtue of the bearer's lacking a stalk, as in flowers or leaves that grow directly from the stem. + Wikipedia:http://en.wikipedia.org/wiki/Sessility_(botany) + + + + + + + + + A attachment quality inhering in a bearer by virtue of the bearer's inability to move about. + quality + PATO:0001437 + + + + sessile (sensu zoology) + + + + + A attachment quality inhering in a bearer by virtue of the bearer's inability to move about. + Wikipedia:http://en.wikipedia.org/wiki/Sessile_(zoology) + + + + + + + + + A attachment quality inhering in a bearer by virtue of the bearer's having or being supported by a pedicel or pedicle. + quality + PATO:0001438 + + + pedicellate + + + + + A attachment quality inhering in a bearer by virtue of the bearer's having or being supported by a pedicel or pedicle. + MedTerms:MedTerms + + + + + + + + + A contractile quality inhering in a bearer by virtue of the bearer's elastic tension that facilitate response to stimuli. + PATO:0001498 + tone + quality + PATO:0001439 + + + + TODO: we need a clearer differentium between this and contractility - or merge? + tonicity + + + + + A contractile quality inhering in a bearer by virtue of the bearer's elastic tension that facilitate response to stimuli. + WordNet:WordNet + + + + + + + + + + A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an identical molecule in an adjacent cell. + quality + PATO:0001440 + + + homophilic + + + + + A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an identical molecule in an adjacent cell. + GO:GO + + + + + + + + + A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an nonidentical molecule in an adjacent cell. + quality + PATO:0001441 + + + heterophilic + + + + + A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an nonidentical molecule in an adjacent cell. + GO:GO + + + + + + + + + A structural quality inhering in a bearer by virtue of whether the bearer includes all its components. + quality + PATO:0001442 + + wholeness + + + + + A structural quality inhering in a bearer by virtue of whether the bearer includes all its components. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + true + + + + + + + + + + A broken quality inhering in a bearer by virtue of the bearer's being broken open. + PATO:0001443 + PATO:0001820 + burst + fractured + fragmented + ruptured + quality + cracked + hemorrhaged + split + torn + PATO:0001444 + + broken + + + + + A broken quality inhering in a bearer by virtue of the bearer's being broken open. + PATOC:GVG + + + + + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's being taken apart into its constituent parts. + quality + PATO:0001445 + + disassembled + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's being taken apart into its constituent parts. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's including all its components. + quality + PATO:0001446 + + whole + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's including all its components. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A composition quality inhering in an bearer by virtue of the bearer's being encrusted or impregnated with calcium carbonate (CHEBI:3311). + calcareous + calcification + quality + PATO:0001447 + + + + calcified + + + + + A composition quality inhering in an bearer by virtue of the bearer's being encrusted or impregnated with calcium carbonate (CHEBI:3311). + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A composition quality inhering in an bearer by virtue of the bearer's being hardened by the deposition of calcium into bone. + quality + PATO:0001448 + + ossified + + + + + A composition quality inhering in an bearer by virtue of the bearer's being hardened by the deposition of calcium into bone. + MAMMALOGY:MAMMALOGY + + + + + + + + + A composition quality inhering in an bearer by virtue of the bearer's cartilage quantities. + quality + PATO:0001449 + + + Cartilage is a type of dense connective tissue. It is composed of specialized cells called chondrocytes (CL:0000138) that produce a large amount of extracellular matrix composed of collagen fibers, abundant ground substance rich in proteoglycan, and elastin fibers. + cartilaginous + + + + + A composition quality inhering in an bearer by virtue of the bearer's cartilage quantities. + Wikipedia:http://en.wikipedia.org/wiki/Cartilaginous + + + + + + + + + A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of extracellular fluid. + edemic + oedematous + oedemic + edema + oedema + quality + PATO:0001450 + + + edematous + + + + + A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of extracellular fluid. + thefreedictionary.com:thefreedictionary.com + + + + + + + + An extended swelling in plant organs caused primarily by an excessive accumulation of water. + quality + edemic + oedematous + oedemic + PATO:0001451 + obsolete edematous (sensu botany) + true + + + + + An extended swelling in plant organs caused primarily by an excessive accumulation of water. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + true + + + + + + + + + An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity. + detached + quality + PATO:0001453 + + + + detached from + + + + + An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity. + PATOC:GVG + + + + + + + + + A sensitivity quality inhering in a bearer by virtue of the bearer's dependence on oxygen. + quality + PATO:0001454 + + + + sensitivity to oxygen + + + + + A sensitivity quality inhering in a bearer by virtue of the bearer's dependence on oxygen. + PATOC:GVG + + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's dependence on oxygen. + + quality + PATO:0001455 + + + aerobic + + + + + A quality inhering in a bearer by virtue of the bearer's dependence on oxygen. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's independence on oxygen. + + quality + PATO:0001456 + + + anaerobic + + + + + A quality inhering in a bearer by virtue of the bearer's independence on oxygen. + PATOC:GVG + + + + + + + + + A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation. + sensitivity of occurrent + quality + PATO:0001457 + + + + sensitivity of a process + + + + + A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation. + PATOC:GVG + + + + + + + + + A sensitivity of a process quality inhering in a bearer by virtue of the bearer's unfolding in a location with or without oxygen. + sensitivity of occurrent to oxygen + quality + PATO:0001458 + + + sensitivity of a process to oxygen + + + + + A sensitivity of a process quality inhering in a bearer by virtue of the bearer's unfolding in a location with or without oxygen. + PATOC:GVG + + + + + + + + + A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen. + + quality + PATO:0001459 + + + aerobic (for occurrence) + + + + + A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen. + PATOC:GVG + + + + + + + + + A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen. + + quality + PATO:0001460 + + + anaerobic (for occurrence) + + + + + A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen. + PATOC:GVG + + + + + + + + + A physical quality inhering in a liquid by virtue of the bearer's ability to attraction of molecules at its surface as a result of unbalanced molecular cohesive forces. + quality + PATO:0001461 + + + + surface tension + + + + + A physical quality inhering in a liquid by virtue of the bearer's ability to attraction of molecules at its surface as a result of unbalanced molecular cohesive forces. + Wikipedia:http://en.wikipedia.org/wiki/Surface_tension + + + + + + + + + A quality inhering in a cell's plasma membrane by virtue of the electrical potential difference across it. + quality + PATO:0001462 + + + membrane potential + + + + + A quality inhering in a cell's plasma membrane by virtue of the electrical potential difference across it. + Wikipedia:http://en.wikipedia.org/wiki/Membrane_potential + + + + + + + + + A quality inhering in a cell's plasma membrane by virtue of a brief fluctuation in the bearer's potential caused by the rapid opening and closing of voltage-gated ion channels. + quality + PATO:0001463 + + + action potential + + + + + A quality inhering in a cell's plasma membrane by virtue of a brief fluctuation in the bearer's potential caused by the rapid opening and closing of voltage-gated ion channels. + Wikipedia:http://en.wikipedia.org/wiki/Action_potential + + + + + + + + + A quality that is equal to the potential energy per unit charge associated with a static (time-invariant) electric field, also called the electrostatic potential. + quality + PATO:0001464 + + + electric potential + + + + + A quality that is equal to the potential energy per unit charge associated with a static (time-invariant) electric field, also called the electrostatic potential. + Wikipedia:http://en.wikipedia.org/wiki/Electric_potential + + + + + + + + + A malformed quality inhering in a bearer by virtue of the bearer's all-encompassing, grotesque morphological defects. + quality + PATO:0001465 + + monstrous + + + + + A malformed quality inhering in a bearer by virtue of the bearer's all-encompassing, grotesque morphological defects. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the front of an organism. + curved anterior + curved superior (human torso) + quality + PATO:0001466 + + curved rostral + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the front of an organism. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the part of the body from which the tail arises. + curved inferior (human torso) + curved posterior + quality + PATO:0001467 + + curved caudal + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the part of the body from which the tail arises. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the back or upper surface of an organism. + curved posterior (human torso) + curved superior (human head) + quality + PATO:0001468 + + curved dorsal + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the back or upper surface of an organism. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the abdomen of an organism. + curved anterior (human torso) + curved inferior (human head) + quality + PATO:0001469 + + curved ventral + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the abdomen of an organism. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity. + proportion + proportionality + quotient + ratio + quality + rate + PATO:0001470 + + + Examples: height to weight; brain size to body size. These could all be children of proportionality. Proportions can be measured as ratios. Some measures may be dimensionless. Not all ratios measure proportionality, eg m/s measures velocity which is not a proportion in the sense defined above, it is a quality in its own right. + proportionality to + + + + + A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity. + PATOC:nw + + + + + + + + + + true + + + + + + + + + + A depth which is relatively low. + + PATO:0001692 + low depth + shallow + quality + PATO:0001472 + + decreased depth + + + + + A depth which is relatively low. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being present in two copies. + doubled + quality + PATO:0001473 + + + duplicated + + + + + A quality inhering in a bearer by virtue of the bearer's being present in two copies. + Dictionary.com:Dictionary.com + + + + + + + + + An oriented quality inhering in a bearer by virtue of the bearer's axis being positioned forward. + quality + PATO:0001474 + + + anteverted + + + + + An oriented quality inhering in a bearer by virtue of the bearer's axis being positioned forward. + bdid:bdid + + + + + + + + + + A position which is relatively high. + + quality + high position + PATO:0001475 + + increased position + + + + + A position which is relatively high. + PATOC:GVG + + + + + + + + + + A positional which is relatively low. + + quality + low position + PATO:0001476 + + decreased position + + + + + A positional which is relatively low. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being drawn in or pulled back from any given point. + moved + quality + retruded + PATO:0001477 + + retracted + + + + + A positional quality inhering in a bearer by virtue of the bearer's being drawn in or pulled back from any given point. + Dictionary.com:Dictionary.com + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being broken down; caved in. + quality + PATO:0001478 + + + collapsed + + + + + A structural quality inhering in a bearer by virtue of the bearer's being broken down; caved in. + Dictionary.com:Dictionary.com + + + + + + + + + + true + + + + + + + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's resembling a sponge in elasticity, absorbency, or porousness. + quality + PATO:0001480 + + + spongy + + + + + A structural quality inhering in a bearer by virtue of the bearer's resembling a sponge in elasticity, absorbency, or porousness. + Answers.com:Answers.com + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction. + quality + PATO:0001481 + + sloped + + + + + A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction. + WordNet:WordNet + + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line. + quality + PATO:0001482 + + prominent + + + + + A quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line. + Dictionary.com:Dictionary.com + + + + + + + + + + Absence of an organ, tissue or cell due to failure to develop from a primordium or precursor cell. + aplasia + undeveloped + quality + PATO:0001483 + + + With aplasia, the primordium or precursor develops, but does not proceed in its development to a mature structure + aplastic + + + + + Absence of an organ, tissue or cell due to failure to develop from a primordium or precursor cell. + PATOC:GVG + PATOC:PortlandMeetingFeb2015 + + + + + + + + + A quality of a process which occurs near to or not long before the present. + quality + PATO:0001484 + + recent + + + + + A quality of a process which occurs near to or not long before the present. + WordNet:WordNet + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together. + + PATO:0001840 + compact + compressed + squashed + quality + dense + PATO:0001485 + + + condensed + + + + + A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together. + PATOC:GVG + + + + + + + + + An age quality that exists by virtue of the time (years and months) that the bearer has existed. + quality + PATO:0001486 + + chronological age + + + + + An age quality that exists by virtue of the time (years and months) that the bearer has existed. + WordNet:Wordnet + + + + + + + + + A time quality inhering in a bearer by virtue of the bearer's growing old; aging. + quality + PATO:0001487 + + + senescent + + + + + A time quality inhering in a bearer by virtue of the bearer's growing old; aging. + answers.com:answers.com + + + + + + + + + A cellular quality inhering in a cell by virtue of whether the bearer exhibits the ability to move spontaneously. + quality + PATO:0001488 + + + + Term should be obsoleted and the GO term cellular motility should be used instead. + cellular motility + + + + + A cellular quality inhering in a cell by virtue of whether the bearer exhibits the ability to move spontaneously. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + true + + + + + + + + + A growth quality of a process inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced or increased growth. + quality + PATO:0001490 + + heterochronic growth + + + + + A growth quality of a process inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced or increased growth. + PATOC:MAH + + + + + + + + + A paedomorphic growth quality which is due to a reduced rate. + neotenic growth + quality + PATO:0001491 + + neotenous growth + + + + + A paedomorphic growth quality which is due to a reduced rate. + PATOC:mh + + + + + + + + + quality + PATO:0001492 + + + This term will be obsoleted; Use GO:growth and PATO:rate. + growth rate + + + + + + + + + + quality + PATO:0001493 + + This term will be obsoleted; Use GO:growth and PATO:rate. + hypertrophic growth + + + + + + + + + + quality + PATO:0001494 + + This term will be obsoleted; Use GO:growth and PATO:rate. + hypotrophic growth + + + + + + + + + A concave quality inhering in a bearer by virtue of the bearer's shape being a V-shaped cut. + quality + indented + PATO:0001495 + + + + notched + + + + + A concave quality inhering in a bearer by virtue of the bearer's shape being a V-shaped cut. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A reproductive quality inhering in the young of an animal by virtue of the bearer's being cared for at one time. + quality + PATO:0001496 + + brood quality + + + + + A reproductive quality inhering in the young of an animal by virtue of the bearer's being cared for at one time. + WordNet:WordNet + + + + + + + + + A reproductive quality inhering in the young of an animal by virtue of the bearer's disposition to survive and develop normally. + quality + PATO:0001497 + + + brood viability + + + + + A reproductive quality inhering in the young of an animal by virtue of the bearer's disposition to survive and develop normally. + PATOC:GVG + + + + + + + + + + true + + + + + + + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter). + PATO:0000408 + globular + quality + rotund + PATO:0001499 + + + + spherical + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter). + WordNet:WordNet + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being gradually narrower or thinner toward one end. + taper + quality + PATO:0001500 + + + tapered + + + + + A shape quality inhering in a bearer by virtue of the bearer's being gradually narrower or thinner toward one end. + WordNet:WordNet + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development. + + quality + underdeveloped + PATO:0001501 + + immature + + + + + A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development. + Merriam-Webster:Merriam-Webster + + + + + + + + + A monadic quality of continuant inhering in a bearer by virtue of the bearer's being intricate and compounded. + quality + PATO:0001502 + + TODO: obsolete this. + complexity + + + + + A monadic quality of continuant inhering in a bearer by virtue of the bearer's being intricate and compounded. + WordNet:WordNet + + + + + + + + + + A complexity quality in a bearer by virtue of the bearer's having few parts or being complicated or compound. + quality + PATO:0001503 + + + simple + + + + + A complexity quality in a bearer by virtue of the bearer's having few parts or being complicated or compound. + WordNet:WordNet + + + + + + + + + A complexity quality inhering in a bearer by virtue of the bearer's being intricate and compounded. + quality + PATO:0001504 + + + complex + + + + + A complexity quality inhering in a bearer by virtue of the bearer's being intricate and compounded. + WordNet:WordNet + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's not being in contact with another entity, or of no longer being connected or joined with another entity. + quality + discontiguous + divided_from + splitted from + PATO:0001505 + + + separated from + + + + + A structural quality inhering in a bearer by virtue of the bearer's not being in contact with another entity, or of no longer being connected or joined with another entity. + WordNet:WordNet + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's separation of normally joined parts, such as the separation of adjacent bones without fracture or of certain abdominal muscles during pregnancy. + quality + PATO:0001506 + + + diastatic + + + + + A structural quality inhering in a bearer by virtue of the bearer's separation of normally joined parts, such as the separation of adjacent bones without fracture or of certain abdominal muscles during pregnancy. + answers.com:answers.com + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being interrupted of its normal course. + quality + PATO:0001507 + + + disrupted + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being interrupted of its normal course. + PATOC:GVG + + + + + + + + + + true + + + + + + + + + A quality of a single physical entity that arises by virtue of whether the bearer exhibits the ability to perform a regular function(s). + quality + PATO:0001509 + + + + functionality + + + + + A quality of a single physical entity that arises by virtue of whether the bearer exhibits the ability to perform a regular function(s). + PATOC:MAH + + + + + + + + + A functionality quality held by the bearer when the latter is able to perform a regular function(s). + + quality + PATO:0001510 + + + functional + + + + + A functionality quality held by the bearer when the latter is able to perform a regular function(s). + PATOC:MAH + + + + + + + + + A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s). + + PATO:0001640 + disfunctional + functional failure + quality + defective + failure + PATO:0001511 + + + non-functional + + + + + A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s). + PATC:MAH + + + + + + + + + A pattern inhering in a surface by virtue of the bearer's being marked by the presence of dots, punctures, points or pits. + quality + dotted + spotted + stippled + PATO:0001512 + + + punctate + + + + + A pattern inhering in a surface by virtue of the bearer's being marked by the presence of dots, punctures, points or pits. + medical-dictionary:medical-dictionary + + + + + + + + + + true + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer. + quality + PATO:0001514 + + + delaminated + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer. + PATOC:cjm + + + + + + + + + A color quality inhering in a bearer by virtue of the bearer's being uneven in color. + quality + murky + PATO:0001515 + + variable color + + + + + A color quality inhering in a bearer by virtue of the bearer's being uneven in color. + PATOC:NC + + + + + + + + + An optical quality where light rays originating from a point on the object converge. + quality + PATO:0001516 + + focus + + + + + An optical quality where light rays originating from a point on the object converge. + Wikipedia:http://en.wikipedia.org/wiki/Focus_(optics) + + + + + + + + + An optical quality inhering in a bearer by virtue of the bearer's having focus. + quality + PATO:0001517 + + focused + + + + + An optical quality inhering in a bearer by virtue of the bearer's having focus. + PATOC:GVG + + + + + + + + + An optical quality inhering in a bearer by virtue of the bearer's lacking focus. + quality + PATO:0001518 + + blurry + + + + + An optical quality inhering in a bearer by virtue of the bearer's lacking focus. + PATOC:NC + + + + + + + + + A quality inhering in a bearer by virtue of vibration, as perceived by the sense of hearing. + quality + PATO:0001519 + + sound quality + + + + + A quality inhering in a bearer by virtue of vibration, as perceived by the sense of hearing. + Wikipedia:http://en.wikipedia.org/wiki/Sound_quality + + + + + + + + + The frequency of transmitted vibrations. + quality + PATO:0001520 + + + sound frequency + + + + + The frequency of transmitted vibrations. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A physical quality inhering in a sound wave by virtue of the maximum magnitude (value without regard to sign) of its disturbance. + loudness + quality + PATO:0001521 + + sound amplitude + + + + + A physical quality inhering in a sound wave by virtue of the maximum magnitude (value without regard to sign) of its disturbance. + answers.com:answers.com + + + + + + + + + A physical quality inhering in sound by virtue of the bearer's travelling speed in a given medium under specified conditions. + quality + PATO:0001522 + + + sound speed + + + + + A physical quality inhering in sound by virtue of the bearer's travelling speed in a given medium under specified conditions. + Wikipedia:http://en.wikipedia.org/wiki/Sound_speed + + + + + + + + + A physical quality which is equal to the quotient of the speed of a sound wave divided by its wavelength. + quality + PATO:0001523 + + + sound wavelength + + + + + A physical quality which is equal to the quotient of the speed of a sound wave divided by its wavelength. + Wikipedia:http://en.wikipedia.org/wiki/Sound_wavelength + + + + + + + + + A sound frequency in the range of 0-20 Hz. + quality + PATO:0001524 + + intrasonic + + + + + A sound frequency in the range of 0-20 Hz. + studyphysics:studyphysics + + + + + + + + + A sound frequency in the range of 20 to 20.000 Hz. + quality + PATO:0001525 + + sonic + + + + + A sound frequency in the range of 20 to 20.000 Hz. + url:http://www.studyphysics.ca/ + + + + + + + + + A sound frequency in the range of 20 000 + Hz. + quality + PATO:0001526 + + ultrasonic + + + + + A sound frequency in the range of 20 000 + Hz. + studyphysics:studyphysics + + + + + + + + + A sound amplitude which is relatively low. + quality + PATO:0001527 + + quiet + + + + + A sound amplitude which is relatively low. + PATOC:GVG + + + + + + + + + A sound amplitude which is relatively high. + quality + PATO:0001528 + + loud + + + + + A sound amplitude which is relatively high. + PATOC:GVG + + + + + + + + + A spatiotemporal quality inhering in a cell. + quality + PATO:0001529 + + cellular spatiotemporal quality + + + + + A spatiotemporal quality inhering in a cell. + PATOC:GVG + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's behavior. + behavioral quality of occurrent + quality + PATO:0001530 + + behavioral quality of a process + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's behavior. + PATOC:GVG + + + + + + + + + + A cellular quality that exists by virtue of the disposition of the cell to adhere to other cells and molecules, through the emergent action of the molecular parts of the cell surface. + quality + PATO:0001531 + + + cellular adhesivity + + + + + A cellular quality that exists by virtue of the disposition of the cell to adhere to other cells and molecules, through the emergent action of the molecular parts of the cell surface. + PATOC:cjm + + + + + + + + + A color pattern inhering in a bearer by virtue of the bearer's having one hue. + evenly colored + homogeneously colored + uniformly colored + quality + homogenously pigmented + PATO:0001532 + + mono-colored + + + + + A color pattern inhering in a bearer by virtue of the bearer's having one hue. + PATOC:GVG + + + + + + + + + A color pattern inhering in a bearer by virtue of bearer's having two or more hues or degrees of saturation. + variegated + quality + PATO:0001533 + + multi-colored + + + + + A color pattern inhering in a bearer by virtue of bearer's having two or more hues or degrees of saturation. + PATOC:GVG + + + + + + + + + A color pattern inhering in a bearer by virtue of bearer's having 3 or more hues or degrees of saturations. + quality + PATO:0001534 + + motley + + + + + A color pattern inhering in a bearer by virtue of bearer's having 3 or more hues or degrees of saturations. + merriam-webster.:merriam-webster. + + + + + + + + + A color pattern inhering in a bearer by virtue of bearer's being marked with small spots, patches, or specks of hue or degree of saturation differing from that of the background. + quality + speckled + PATO:0001535 + + dappled + + + + + A color pattern inhering in a bearer by virtue of bearer's being marked with small spots, patches, or specks of hue or degree of saturation differing from that of the background. + merriam-webster.:merriam-webster. + + + + + + + + + A molecular quality that inheres in a molecular entity by virtue of the bearer's disposition to dissolve in a liquid. + quality + PATO:0001536 + + + + + solubility + + + + + A molecular quality that inheres in a molecular entity by virtue of the bearer's disposition to dissolve in a liquid. + edp:edp + + + + + + + + + + A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid. + + soluble + quality + PATO:0001537 + + + + soluble in + + + + + A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid. + edp:edp + + + + + + + + + A solubility quality inhering in a substance by virtue of the bearer's inability of a substance to dissolve in a liquid. + + insoluble + quality + PATO:0001538 + + + + insoluble in + + + + + A solubility quality inhering in a substance by virtue of the bearer's inability of a substance to dissolve in a liquid. + edp:edp + + + + + + + + + A compositional quality inhering in an bearer by virtue of the bearer's quantities or relative ratios of amylose of the inhering entity. + amylose compositionality + quality + PATO:0001539 + + + amylose composition + + + + + A compositional quality inhering in an bearer by virtue of the bearer's quantities or relative ratios of amylose of the inhering entity. + PATOC:GVG + + + + + + + + + An amylose composition quality inhering in an bearer by virtue of the bearer's having negligible or no amylose content. + quality + PATO:0001540 + + glutinous + + + + + An amylose composition quality inhering in an bearer by virtue of the bearer's having negligible or no amylose content. + TO:TO + + + + + + + + + An amylose composition quality inhering in an bearer by virtue of the bearer's having high amount of amylose content. + quality + PATO:0001541 + + non-glutinous + + + + + An amylose composition quality inhering in an bearer by virtue of the bearer's having high amount of amylose content. + TO:TO + + + + + + + + + A phase which starts later than natural start point. + quality + PATO:0001542 + + delayed phase + + + + + A phase which starts later than natural start point. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking. + quality + PATO:0001543 + + + flexibility + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking. + merriam-webster:merriam-webster + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking. + + bendy + quality + PATO:0001544 + + + flexible + + + + + A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking. + merriam-webster:merriam-webster + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking. + + stiff + quality + stiffness + PATO:0001545 + + + inflexible + + + + + A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking. + merriam-webster:merriam-webster + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity characterized by particles arranged such that their shape and volume are relatively stable. + solidity + quality + PATO:0001546 + + quality of a solid + + + + + A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity characterized by particles arranged such that their shape and volume are relatively stable. + Chemistry:http://chemistry.about.com/od/chemistryglossary/a/soliddefinition.htm + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape. + gaseous + quality + PATO:0001547 + + quality of a gas + + + + + A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape. + Chemistry:http://chemistry.about.com/od/chemistryglossary/a/gasdefinition.htm + PATOC:GVG + + + + + + + + + A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape. + liquidity + quality + PATO:0001548 + + quality of a liquid + + + + + A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape. + url:http://www.chemistry-dictionary.com/definition/liquid.php + + + + + + + + + + A sensitivity toward an external stimulus which is higher than normal/average. + + high sensitivity toward + increased sensitivity + quality + PATO:0001549 + + + + increased sensitivity toward + + + + + A sensitivity toward an external stimulus which is higher than normal/average. + PATO:GVG + + + + + + + + + + A sensitivity toward an external stimulus which is lower than normal/average. + + decreased sensitivity + low sensitivity toward + quality + PATO:0001550 + + + + decreased sensitivity toward + + + + + A sensitivity toward an external stimulus which is lower than normal/average. + PATO:GVG + + + + + + + + + + A sensitivity of a process which is higher than normal or average. + + high sensitivity of occurrent + increased sensitivity of occurrent + quality + PATO:0001551 + + + increased sensitivity of a process + + + + + A sensitivity of a process which is higher than normal or average. + PATO:GVG + + + + + + + + + + A sensitivity of a process which is lower than normal or average. + + decreased sensitivity of occurrent + low sensitivity of occurrent + quality + PATO:0001552 + + + decreased sensitivity of a process + + + + + A sensitivity of a process which is lower than normal or average. + PATO:GVG + + + + + + + + + + A sensitivity of occurrent to oxygen which is higher than normal or average. + + high sensitivity of occurrent to oxygen + quality + PATO:0001553 + + + increased sensitivity of a process to oxygen + + + + + A sensitivity of occurrent to oxygen which is higher than normal or average. + PATO:GVG + + + + + + + + + + A sensitivity of a process to oxygen which is lower than normal or average. + + low sensitivity of occurrent to oxygen + quality + PATO:0001554 + + + decreased sensitivity of a process to oxygen + + + + + A sensitivity of a process to oxygen which is lower than normal or average. + PATO:GVG + + + + + + + + + + + + + + + The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts. + OBO_REL:has_part + extra or missing physical or functional parts + has or lacks parts of type + mereological quality + number of + quality + cardinality + number + PATO:0001555 + + + has number of + + + + + The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts. + PATOC:CJM + + + + + + + + + + true + + + + + + + + + + true + + + + + + + + + + + + + + + A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity. + quality + PATO:0001558 + + + lacking processual parts + + + + + A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity. + PATOC:GVG + + + + + + + + + + A functionality quality which is held by the bearer when the latter is able to perform additional or different function(s). + having supernumerary functions + quality + PATO:0001559 + + + having extra function + + + + + A functionality quality which is held by the bearer when the latter is able to perform additional or different function(s). + PATO:MAH + + + + + + + + + + true + + + + + + + + + A quality of a process inhering in a bearer by virtue of the bearer's having additional processual parts. + having supernumerary processual parts + quality + PATO:0001561 + + + having extra processual parts + + + + + A quality of a process inhering in a bearer by virtue of the bearer's having additional processual parts. + PATOC:GVG + + + + + + + + + + A mass which is lower than normal or average. + + PATO:0000579 + low mass + small mass + quality + PATO:0001562 + + decreased mass + + + + + A mass which is lower than normal or average. + PATO:GVG + + + + + + + + + + A mass which is higher than normal or average. + + PATO:0000578 + high mass + large mass + quality + PATO:0001563 + + increased mass + + + + + A mass which is higher than normal or average. + PATO:GVG + + + + + + + + + A quality of a process inhering in a bearer by virtue of the bearer's processual parts. + quality + PATO:0001564 + + extra or missing processual parts + + + + + A quality of a process inhering in a bearer by virtue of the bearer's processual parts. + PATOC:GVG + + + + + + + + + + true + + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up. + + PATO:0001513 + diffuse + scattered + quality + PATO:0001566 + + + distributed + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up. + WordNet:WordNet + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up. + + quality + PATO:0001567 + + undistributed + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up. + WordNet:WordNet + + + + + + + + + + true + + + + + + + + + + true + + + + + + + + + A quality of a process inhering in a bearer by virtue of the bearer's having fewer processual parts. + quality + PATO:0001570 + + + having decreased processual parts + + + + + A quality of a process inhering in a bearer by virtue of the bearer's having fewer processual parts. + PATO:GVG + + + + + + + + + A size quality inhering in a bearer by virtue of the bearer's being made wider or larger in all dimensions. + quality + PATO:0001571 + + + dilated + + + + + A size quality inhering in a bearer by virtue of the bearer's being made wider or larger in all dimensions. + WordNet:WordNet + + + + + + + + + + true + + + + + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's having equal dimensions or measurements. + quality + PATO:0001573 + + + isometrical + + + + + A symmetry quality inhering in a bearer by virtue of the bearer's having equal dimensions or measurements. + WordNet:WordNet + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's motion characteristic. + quality + PATO:0001574 + + + flow rate + + + + + A physical quality inhering in a bearer by virtue of the bearer's motion characteristic. + WordNet:WordNet + + + + + + + + + + A pressure which is relatively low. + + low pressure + quality + PATO:0001575 + + decreased pressure + + + + + A pressure which is relatively low. + PATO:GVG + + + + + + + + + + A pressure which is relatively high. + + high pressure + quality + PATO:0001576 + + increased pressure + + + + + A pressure which is relatively high. + PATO:GVG + + + + + + + + + + A permeability which is relatively high. + + high permeability + quality + PATO:0001577 + + + increased permeability + + + + + A permeability which is relatively high. + PATO:GVG + + + + + + + + + + A permeability which is relatively low. + + low permeability + quality + PATO:0001578 + + + decreased permeability + + + + + A permeability which is relatively low. + PATO:GVG + + + + + + + + + A physical quality that is the ability to contract or shrink. + quality + PATO:0001579 + + + + contractility + + + + + A physical quality that is the ability to contract or shrink. + WordNet:WordNet + + + + + + + + + + A contractility which is relatively high. + + high contractility + quality + PATO:0001580 + + + increased contractility + + + + + A contractility which is relatively high. + PATO:GVG + + + + + + + + + + A contractility which is relatively low. + + low contractility + quality + PATO:0001581 + + + decreased contractility + + + + + A contractility which is relatively low. + PATO:GVG + + + + + + + + A spatial quality inhering in an inactive muscle or muscle fibers by virtue of the bearer's exhibiting gradual lengthening. + quality + PATO:0001582 + GO has now relevant relation terms which should be used instead. + obsolete relaxational quality + true + + + + + A spatial quality inhering in an inactive muscle or muscle fibers by virtue of the bearer's exhibiting gradual lengthening. + WordNet:WordNet + + + + + + + + + + A variability which is relatively low. + + low variability + quality + PATO:0001583 + + decreased variability + + + + + A variability which is relatively low. + PATO:GVG + + + + + + + + + + A variability which is relatively high. + + high variability + quality + PATO:0001584 + + increased variability + + + + + A variability which is relatively high. + PATO:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to transmit of an entity through a medium. + quality + PATO:0001585 + + + + Examples could be heat or electricity or sound. + conductivity + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to transmit of an entity through a medium. + PATOC:GVG + + + + + + + + + + + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits rate variation or change. + quality + PATO:0001586 + + variability of rate + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits rate variation or change. + PATO:GVG + + + + + + + + + + A variability of rate which is relatively high. + + high variability of rate + quality + PATO:0001587 + + increased variability of rate + + + + + A variability of rate which is relatively high. + PATO:GVG + + + + + + + + + + A variability of rate which is relatively low. + + low variability of rate + quality + PATO:0001588 + + decreased variability of rate + + + + + A variability of rate which is relatively low. + PATO:GVG + + + + + + + + Increased, intensified. + PATO:0002017 + quality + PATO:0001589 + Obsoleted because it used to be a child of behavioral quality, which really meant increased magnitude of a given behavior. Now this can be done by using increased magnitude with another quality. + obsolete enhanced + true + + + + + Increased, intensified. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's coinciding spatially, partially or wholly with another entity. + overlap + quality + PATO:0001590 + + + overlap with + + + + + A structural quality inhering in a bearer by virtue of the bearer's coinciding spatially, partially or wholly with another entity. + PATO:GVG + + + + + + + + + A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending. + quality + PATO:0001591 + + curvature + + + + + A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending. + WordNet:WordNet + + + + + + + + + + A curvature which is relatively high. + + quality + PATO:0001592 + + increased curvature + + + + + A curvature which is relatively high. + PATO:GVG + + + + + + + + + + A curvature which is relatively low. + + quality + PATO:0001593 + + decreased curvature + + + + + A curvature which is relatively low. + PATO:GVG + + + + + + + + + A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch. + quality + PATO:0001594 + + arched + + + + + A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch. + WordNet:WordNet + + + + + + + + + A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimenision. + quality + PATO:0001595 + + + depth + + + + + A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimenision. + WordNet:WordNet + + + + + + + + + + A depth quality which is relatively high. + + PATO:0001666 + deep + quality + PATO:0001596 + + increased depth + + + + + A depth quality which is relatively high. + PATO:GVG + + + + + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being turned outward in placement. + quality + PATO:0001597 + + + everted + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being turned outward in placement. + thefreedictionary:thefreedictionary + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's extending out above or beyond a surface or boundary. + PATO:0001644 + protruding + relational protruding quality + quality + PATO:0001598 + + protruding + + + + + A quality inhering in a bearer by virtue of the bearer's extending out above or beyond a surface or boundary. + WordNet:WordNet + + + + + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being relocated around an axis. + rotation + quality + PATO:0001599 + + + rotated + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being relocated around an axis. + answers.com:answers.com + + + + + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the rear of organism. + quality + PATO:0001600 + + + posteriorly rotated + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the rear of organism. + PATOC:GVG + + + + + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the front of an organism. + quality + PATO:0001601 + + + anteriorly rotated + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the front of an organism. + PATOC:GVG + + + + + + + + + A size quality inhering in a bearer by virtue of the bearer's being abnormally expanded or increased in size. + quality + expanded + PATO:0001602 + + + distended + + + + + A size quality inhering in a bearer by virtue of the bearer's being abnormally expanded or increased in size. + WordNet:WordNet + + + + + + + + + + A life span which is relatively high. + + high life span + quality + PATO:0001603 + increased life span + + + + + A life span which is relatively high. + PATO:GVG + + + + + + + + + + A life span which is relatively low. + + low life span + quality + PATO:0001604 + decreased life span + + + + + A life span which is relatively low. + PATO:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being in disarray; extremely disorderly. + quality + PATO:0001605 + + + disheveled + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being in disarray; extremely disorderly. + WordNet:WordNet + + + + + + + + + A coating which is oily and slippery. + quality + PATO:0001606 + + + greasy + + + + + A coating which is oily and slippery. + .answers.com:.answers.com + + + + + + + + + A tangled quality inhering in a bearer by virtue of the bearer's being not possible to unravel. + quality + PATO:0001607 + + + matted + + + + + A tangled quality inhering in a bearer by virtue of the bearer's being not possible to unravel. + PATOC:MAH + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being marked by, consisting of, or diversified with patches. + quality + PATO:0001608 + + + patchy + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being marked by, consisting of, or diversified with patches. + Merriam-Webster:Merriam-Webster + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being scattered; spread irregularly, and at a distance from each other. + quality + PATO:0001609 + + + sparse + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being scattered; spread irregularly, and at a distance from each other. + biology.lsu:biology.lsu + + + + + + + + + + true + + + + + + + + + + + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits color variation or change. + quality + PATO:0001611 + + variability of color + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits color variation or change. + PATO:GVG + + + + + + + + + + A variability of color which is relatively high. + + high variability of color + quality + PATO:0001612 + + increased variability of color + + + + + A variability of color which is relatively high. + PATO:GVG + + + + + + + + + + A variability of color which is relatively low. + + low variability of color + quality + PATO:0001613 + + decreased variability of color + + + + + A variability of color which is relatively low. + PATO:GVG + + + + + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color. + + quality + PATO:0001614 + + invariant color + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color. + PATO:GVG + + + + + + + + + A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour. + + quality + PATO:0001615 + + variant color + + + + + A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour. + PATO:GVG + + + + + + + + + + true + + + + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's being distorted in form. + quality + disfigured + distorted + PATO:0001617 + + deformed + + + + + A morphological quality inhering in a bearer by virtue of the bearer's being distorted in form. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + A tonicity which is relatively high. + + high tonicity + quality + PATO:0001618 + + + increased tonicity + + + + + A tonicity which is relatively high. + PATO:GVG + + + + + + + + + + A tonicity which is relatively low. + + low tonicity + quality + PATO:0001619 + + + decreased tonicity + + + + + A tonicity which is relatively low. + PATO:GVG + + + + + + + + + A structural quality inhering in a cell or blood vessel or capillary by virtue of the bearer's being in a rigid state of fullness resulting from pressure of the contents against the wall or membrane. + quality + PATO:0001620 + + + turgor + + + + + A structural quality inhering in a cell or blood vessel or capillary by virtue of the bearer's being in a rigid state of fullness resulting from pressure of the contents against the wall or membrane. + WordNet:WordNet + + + + + + + + + + A turgor which is relatively low. + + low turgor + quality + PATO:0001621 + + + decreased turgor + + + + + A turgor which is relatively low. + PATO:GVG + + + + + + + + + + A turgor which is relatively high. + + high turgor + quality + PATO:0001622 + + + increased turgor + + + + + A turgor which is relatively high. + PATO:GVG + + + + + + + + + A size quality inhering in a bearer by virtue of a part or parts of the bearer's being decreased in size due to reduction in tissue mass through wasting. + atrophic + quality + PATO:0001623 + + + atrophied + + + + + A size quality inhering in a bearer by virtue of a part or parts of the bearer's being decreased in size due to reduction in tissue mass through wasting. + Wiikipedia:Wasting + Wikipedia:Atrophy + + + + + + + + + + A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s). + + PATO:0001556 + PATO:0001568 + PATO:0001641 + PATO:0001642 + dysfunction + dysfunctional + having decreased function + lacks function of type + low functionality + partial functionality + quality + impaired + PATO:0001624 + + + decreased functionality + + + + + A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s). + PATO:MAH + + + + + + + + + + A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s). + + high functionality + quality + PATO:0001625 + + + increased functionality + + + + + A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s). + PATO:MAH + + + + + + + + + A structural quality inhering in a bearer by virtue of whether the bearer has enough functionality. + quality + adequacy + PATO:0001626 + + This term and children should probably be obsoleted. + sufficiency + + + + + A structural quality inhering in a bearer by virtue of whether the bearer has enough functionality. + PATO:GVG + + + + + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality. + + quality + adequate + PATO:0001627 + + sufficient + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality. + PATO:GVG + + + + + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality. + + quality + inadequate + PATO:0001628 + + insufficient + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality. + PATO:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole. + clumped + clustered + quality + PATO:0001629 + + + aggregated + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole. + WordNet:WordNet + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent. + quality + PATO:0001630 + + + dispersed + + + + + A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent. + WordNet:WordNet + + + + + + + + + + true + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front of an organism relative to another entity. + preceding + ventral_to + quality + PATO:0001632 + + + + anterior to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front of an organism relative to another entity. + PATOC:nw + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear of an organism relative to another entity. + posterior (human torso) + superior (human head) + quality + PATO:0001633 + + + + posterior to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear of an organism relative to another entity. + PATOC:nw + + + + + + + + + A quality of a single physical entity inhering in a bearer by virtue of whether the bearer is essential or indispensable. + quality + PATO:0001634 + + necessity (continuant) + + + + + A quality of a single physical entity inhering in a bearer by virtue of whether the bearer is essential or indispensable. + WordNet:WordNet + + + + + + + + + + A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being essential or indispensable. + + quality + PATO:0001635 + + necessary (continuant) + + + + + A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being essential or indispensable. + WordNet:WordNet + + + + + + + + + A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable. + + quality + PATO:0001636 + + unnecessary (continuant) + + + + + A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable. + WordNet:WordNet + + + + + + + + + A quality of single process inhering in a bearer by virtue of whether the bearer is essential or indispensable. + quality + PATO:0001637 + + necessity of occurrent + + + + + A quality of single process inhering in a bearer by virtue of whether the bearer is essential or indispensable. + PATO:GVG + + + + + + + + + A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable. + + quality + PATO:0001638 + + necessary (occurrent) + + + + + A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable. + PATO:GVG + + + + + + + + + A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable. + + quality + PATO:0001639 + + unnecessary (occurrent) + + + + + A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable. + PATO:GVG + + + + + + + + + + true + + + + + + + + + + true + + + + + + + + + + true + + + + + + + + + A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build. + quality + PATO:0001643 + + stubby + + + + + A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + true + + + + + + + + + A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary into the surface or boundary of another entity. + quality + PATO:0001645 + + + protruding into + + + + + A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary into the surface or boundary of another entity. + PATOC:nc + + + + + + + + + A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary and outwards in relation to the physical space occupied by another entity. + extruding from + quality + exits through + exposed + PATO:0001646 + + + protruding out of + + + + + A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary and outwards in relation to the physical space occupied by another entity. + PATOC:nc + + + + + + + + + + true + + + + + + + + + An 1-D extent quality which is equal to the length of the closed curve of a circle. + quality + PATO:0001648 + + + circumference + + + + + An 1-D extent quality which is equal to the length of the closed curve of a circle. + WordNet:WordNet + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the side. + quality + PATO:0001649 + + curved lateral + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the side. + PATOC:GVG + + + + + + + + + + A resistance to a stimulus which is relatively high. + + high resistance to + increased resistance + quality + PATO:0001650 + + + + increased resistance to + + + + + A resistance to a stimulus which is relatively high. + PATOC:GVG + + + + + + + + + + A resistance to a stimulus which is relatively low. + + decreased resistance + low resistance to + quality + PATO:0001651 + + + + decreased resistance to + + + + + A resistance to a stimulus which is relatively low. + PATOC:GVG + + + + + + + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's spatial positioning with respect to an additional entity. + quality + PATO:0001652 + + + alignment + + + + + A spatial quality inhering in a bearer by virtue of the bearer's spatial positioning with respect to an additional entity. + PATOC:GVG + + + + + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity. + + aligned + quality + aligned to + PATO:0001653 + + + aligned with + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity. + PATO:GVG + + + + + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity. + + misaligned + unaligned with + quality + PATO:0001654 + + + misaligned with + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity. + PATOC:GVG + + + + + + + + + A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per liter of solution. + quality + PATO:0001655 + + + + osmolarity + + + + + A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per liter of solution. + Wikipedia:http://en.wikipedia.org/wiki/Osmolarity + + + + + + + + + + A osmolarity which is relatively low. + + low osmolarity + quality + PATO:0001656 + + + decreased osmolarity + + + + + A osmolarity which is relatively low. + PATOC:GVG + + + + + + + + + + A osmolarity which is relatively high. + + high osmolarity + quality + PATO:0001657 + + + increased osmolarity + + + + + A osmolarity which is relatively high. + PATOC:GVG + + + + + + + + + A rotatiotion quality inhering in a bearer by virtue of being rotated towards the back or upper surface of an organism. + quality + PATO:0001658 + + + dorsally rotated + + + + + A rotatiotion quality inhering in a bearer by virtue of being rotated towards the back or upper surface of an organism. + PATOC:GVG + + + + + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the abdomen of an organism. + quality + PATO:0001659 + + + + ventrally rotated + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the abdomen of an organism. + PATOC:GVG + + + + + + + + An action potential which is relatively low. + low action potential + quality + PATO:0001660 + + obsolete decreased action potential + true + + + + + An action potential which is relatively low. + PATOC:GVG + + + + + + + + An action potential which is relatively high. + high action potential + quality + PATO:0001661 + + obsolete increased action potential + true + + + + + An action potential which is relatively high. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to being damaged or destroyed. + quality + PATO:0001662 + + + + fragility + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to being damaged or destroyed. + WordNet:WordNet + + + + + + + + + + A solubility which is relatively high. + + high solubility + quality + PATO:0001663 + + + + increased solubility + + + + + A solubility which is relatively high. + PATO:GVG + + + + + + + + + + A solubility which is relatively low. + + low solubility + quality + PATO:0001664 + + + + decreased solubility + + + + + A solubility which is relatively low. + PATO:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being located near a surface. + PATO:0001471 + superficial to + quality + PATO:0001665 + + + + superficial + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being located near a surface. + Dictionary.com:Dictionary.com + + + + + + + + + + true + + + + + + + + + An attachment quality inhering in a bearer by virtue of the bearer's connection or association with another entity. + attached + quality + affixed to + PATO:0001667 + + + + attached to + + + + + An attachment quality inhering in a bearer by virtue of the bearer's connection or association with another entity. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being in close proximity and physically interacting with another entity. + associated + quality + PATO:0001668 + + + + associated with + + + + + A structural quality inhering in a bearer by virtue of the bearer's being in close proximity and physically interacting with another entity. + PATOC:GVG + + + + + + + + + + A susceptibility toward an external stimulus which is higher than normal/average. + + high susceptibility toward + increased susceptibility + quality + PATO:0001669 + + + + increased susceptibility toward + + + + + A susceptibility toward an external stimulus which is higher than normal/average. + PATOC:GVG + + + + + + + + + + A susceptibility toward an external stimulus which is lower than normal/average. + + decreased susceptibility + low susceptibility toward + quality + PATO:0001670 + + + + decreased susceptibility toward + + + + + A susceptibility toward an external stimulus which is lower than normal/average. + PATOC:GVG + + + + + + + + + + A distribution which is relatively high. + + high distribution + quality + PATO:0001671 + + increased distribution + + + + + A distribution which is relatively high. + PATOC:GVG + + + + + + + + + + A distribution which is relatively low. + + low distribution + quality + PATO:0001672 + + decreased distribution + + + + + A distribution which is relatively low. + PATOC:GVG + + + + + + + + + Structure quality that is the presence of closed epithelium bounded capsules containing one or more liquid or solid organism substances. + cysts + quality + PATO:0001673 + + Cystic is an abnormal condition. + cystic + + + + + Structure quality that is the presence of closed epithelium bounded capsules containing one or more liquid or solid organism substances. + PATOC:MAH + + + + + + + + + A concentration quality inhering in a bearer by virtue of the bearer's catalytic activity divided by the volume of the system. + quality + PATO:0001674 + + + + catalytic (activity) concentration + + + + + A concentration quality inhering in a bearer by virtue of the bearer's catalytic activity divided by the volume of the system. + IUPAC:IUPAC + + + + + + + + + + An efficiency which is relatively low. + + low efficiency + quality + PATO:0001675 + + decreased efficiency + + + + + An efficiency which is relatively low. + PATOC:GVG + + + + + + + + + + An efficiency which is relatively high. + + high efficiency + quality + PATO:0001676 + + increased efficiency + + + + + An efficiency which is relatively high. + PATOC:GVG + + + + + + + + + + An efficiency quality inhering in a bearer by virtue of the bearer's lacking efficiency. + + quality + PATO:0001677 + + inefficient + + + + + An efficiency quality inhering in a bearer by virtue of the bearer's lacking efficiency. + PATOC:GVG + + + + + + + + + An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency. + + quality + PATO:0001678 + + efficient + + + + + An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency. + PATOC:GVG + + + + + + + + + A volume quality inhering in a mass of substance by virtue of the amount of 3-dimensional space it occupies. + quality + PATO:0001679 + + + The reciprocal of density. + specific volume + + + + + A volume quality inhering in a mass of substance by virtue of the amount of 3-dimensional space it occupies. + Wikipedia:http://en.wikipedia.org/wiki/Specific_volume + + + + + + + + + A volume quality inhering in a homogeneous substance containing 6.02 x 1023 atoms or molecules by virtue of the amount of 3-dimensional space it occupies. + quality + PATO:0001680 + + + molar volume + + + + + A volume quality inhering in a homogeneous substance containing 6.02 x 1023 atoms or molecules by virtue of the amount of 3-dimensional space it occupies. + Wikipedia:http://en.wikipedia.org/wiki/Molar_volume + + + + + + + + + A physical quality that inheres in a homogeneous substance containing 6.02 x 1023 atoms or molecules. + quality + PATO:0001681 + + + molar mass + + + + + A physical quality that inheres in a homogeneous substance containing 6.02 x 1023 atoms or molecules. + Wikipedia:http://en.wikipedia.org/wiki/Molar_mass + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to exert an attractive or repulsive force on other entities. + quality + PATO:0001682 + + + + magnetism + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to exert an attractive or repulsive force on other entities. + Wikipedia:http://en.wikipedia.org/wiki/Magnetism + + + + + + + + + + A magnetism which is relatively high. + + high magnetism + quality + PATO:0001683 + + + increased magnetism + + + + + A magnetism which is relatively high. + PATOC:GVG + + + + + + + + + + A magnetism which is relatively low. + + low magnetism + quality + PATO:0001684 + + + decreased magnetism + + + + + A magnetism which is relatively low. + PATOC:GVG + + + + + + + + + + A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism. + + quality + PATO:0001685 + + + magnetic + + + + + A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism. + PATOC:GVG + + + + + + + + + A magnetic quality inhering in a bearer by virtue of the bearer's inability to exert magnitism. + + quality + PATO:0001686 + + + non-magnetic + + + + + A magnetic quality inhering in a bearer by virtue of the bearer's inability to exert magnitism. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface. + quality + PATO:0001687 + + elevation + + + + + A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface. + Trailillustrated:Trailillustrated + + + + + + + + + + An elevation which is relatively high. + + high elevation + quality + elevated + PATO:0001688 + + increased elevation + + + + + An elevation which is relatively high. + PATOC:GVG + + + + + + + + + + An elevation which is relatively low. + + low elevation + quality + PATO:0001689 + + decreased elevation + + + + + An elevation which is relatively low. + PATOC:GVG + + + + + + + + + + A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted. + + quality + PATO:0001690 + + + This refers to the disposition of the bearer. + contractile + + + + + A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted. + PATOC:GVG + + + + + + + + + A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted. + + quality + PATO:0001691 + + + This refers to the disposition of the bearer. + non-contractile + + + + + A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted. + PATOC:GVG + + + + + + + + + + true + + + + + + + + + + A viscosity which relatively high. + + high viscosity + quality + PATO:0001693 + + + increased viscosity + + + + + A viscosity which relatively high. + PATOC:GVG + + + + + + + + + + A viscosity which relatively low. + + low viscosity + quality + PATO:0001694 + + + decreased viscosity + + + + + A viscosity which relatively low. + PATOC:GVG + + + + + + + + + + A fecundity which is relatively high. + + high fecundity + quality + PATO:0001695 + + + increased fecundity + + + + + A fecundity which is relatively high. + PATOC:GVG + + + + + + + + + + A fecundity which is relatively low. + + low fecundity + quality + PATO:0001696 + + + decreased fecundity + + + + + A fecundity which is relatively low. + PATOC:GVG + + + + + + + + + + A photosensitivity which is relatively low. + + low photosensitivity + quality + PATO:0001697 + + + + decreased photosensitivity + + + + + A photosensitivity which is relatively low. + PATOC:GVG + + + + + + + + + + A photosensitivity which is relatively high. + + high photosensitivity + quality + PATO:0001698 + + + + increased photosensitivity + + + + + A photosensitivity which is relatively high. + PATOC:GVG + + + + + + + + + A sleep pattern which has regular start and/or end times. + + quality + PATO:0001699 + + regular sleep pattern + + + + + A sleep pattern which has regular start and/or end times. + PATOC:GVG + + + + + + + + + A sleep pattern which has irregular start and/or end times. + + quality + PATO:0001700 + + irregular sleep pattern + + + + + A sleep pattern which has irregular start and/or end times. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development. + + quality + PATO:0001701 + + mature + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development. + Merriam-Webster:Merriam-Webster + + + + + + + + + A color consisting of violet hue and high saturation. + quality + bright violet + PATO:0001702 + + saturated violet + + + + + A color consisting of violet hue and high saturation. + PATOC:GVG + + + + + + + + + A color consisting of violet hue and low saturation. + pale violet + quality + PATO:0001703 + + desaturated violet + + + + + A color consisting of violet hue and low saturation. + PATOC:GVG + + + + + + + + + A color consisting of violet hue and high brightness. + quality + PATO:0001704 + + + light violet + + + + + A color consisting of violet hue and high brightness. + PATOC:GVG + + + + + + + + + A color consisting of violet hue and low brightness. + quality + PATO:0001705 + + + dark violet + + + + + A color consisting of violet hue and low brightness. + PATOC:GVG + + + + + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's disposition to lack activity. + + quality + PATO:0001706 + + + behavioural inactive + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's disposition to lack activity. + PATOC:GVG + + + + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity. + + quality + PATO:0001707 + + behavioural active + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity. + PATOC:GVG + + + + + + + + + A size quality inhering in an bearer by virtue of the bearer's extension in one dimension. + 1-D size + quality + PATO:0001708 + + 1-D extent + + + + + A size quality inhering in an bearer by virtue of the bearer's extension in one dimension. + PATOC:GVG + + + + + + + + + A size quality inhering in an bearer by virtue of the bearer's extension in two dimensions. + 2-D size + quality + PATO:0001709 + + 2-D extent + + + + + A size quality inhering in an bearer by virtue of the bearer's extension in two dimensions. + PATOC:GVG + + + + + + + + + A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions. + 3D size + quality + PATO:0001710 + + 3-D extent + + + + + A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions. + PATOC:GVG + + + + + + + + + An 1-D extent quality inhering in two-dimensional bearer by virtue of being equal to the distance around it. + quality + PATO:0001711 + + + perimeter + + + + + An 1-D extent quality inhering in two-dimensional bearer by virtue of being equal to the distance around it. + Wikipedia:http://en.wikipedia.org/wiki/Perimeter + + + + + + + + + + A perimeter which is relatively high. + + quality + PATO:0001712 + + increased perimeter + + + + + A perimeter which is relatively high. + PATOC:GVG + + + + + + + + + + A perimeter which is relatively low. + + quality + PATO:0001713 + + decreased perimeter + + + + + A perimeter which is relatively low. + PATOC:GVG + + + + + + + + + + A diameter which is relatively large. + + quality + PATO:0001714 + + increased diameter + + + + + A diameter which is relatively large. + PATOC:GVG + + + + + + + + + + A diameter which is relatively small. + + quality + PATO:0001715 + + decreased diameter + + + + + A diameter which is relatively small. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking. + + quality + resilient + strong + tough + PATO:0001716 + + + non-fragile + + + + + A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A radiation emitting quality which obtains by the intensity of the bearer emitted radiation. + quality + PATO:0001717 + radiation emitting intensity quality + + + + + A radiation emitting quality which obtains by the intensity of the bearer emitted radiation. + PATOC:GVG + + + + + + + + + A quality that exists by virtue of the luminous intensity per unit area projected in a given direction. + quality + PATO:0001718 + luminance + + + + + A quality that exists by virtue of the luminous intensity per unit area projected in a given direction. + Wikipedia:http://en.wikipedia.org/wiki/Luminance + + + + + + + + + A behavioral quality which holds by virtue of whether the bearer exhibits the ability to receive another agentitive entity. + quality + PATO:0001719 + + + + receptivity + + + + + A behavioral quality which holds by virtue of whether the bearer exhibits the ability to receive another agentitive entity. + PATOC:cjm + + + + + + + + + A behavioral quality which holds by virtue of extent of the receptiveness of a female to male advances. + quality + PATO:0001720 + + + + female receptivity + + + + + A behavioral quality which holds by virtue of extent of the receptiveness of a female to male advances. + GO:GO + + + + + + + + + A behavioral quality which holds by virtue of extent of the receptiveness of a male to female advances. + quality + PATO:0001721 + + + + male receptivity + + + + + A behavioral quality which holds by virtue of extent of the receptiveness of a male to female advances. + PATOC:GVG + + + + + + + + + + true + + + + + + + + + + A female receptivity which is relatively high. + + high female receptivity + quality + PATO:0001723 + + + increased female receptivity + + + + + A female receptivity which is relatively high. + PATOC:GVG + + + + + + + + + + A female receptivity which is relatively low. + + low female receptivity + quality + PATO:0001724 + + + decreased female receptivity + + + + + A female receptivity which is relatively low. + PATOC:GVG + + + + + + + + + + A male receptivity which is relatively high. + + high male receptivity + quality + PATO:0001725 + + + increased male receptivity + + + + + A male receptivity which is relatively high. + PATOC:GVG + + + + + + + + + + A male receptivity which is relatively low. + + low male receptivity + quality + PATO:0001726 + + + decreased male receptivity + + + + + A male receptivity which is relatively low. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's prevailing tendency, mood, or inclination. + quality + tendency + PATO:0001727 + + + + disposition + + + + + A quality inhering in a bearer by virtue of the bearer's prevailing tendency, mood, or inclination. + Merriam-Webster:Merriam-Webster + + + + + + + + + A disposition inhering in a multi-cellular organism. + quality + PATO:0001728 + + + multi-cellular organismal disposition + + + + + A disposition inhering in a multi-cellular organism. + PATOC:GVG + + + + + + + + + An organismal quality inhering in a bearer by virtue of the bearer's disposition to lose an entitity by natural process. + quality + PATO:0001729 + + + + shedability + + + + + An organismal quality inhering in a bearer by virtue of the bearer's disposition to lose an entitity by natural process. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to shed body parts. + quality + PATO:0001730 + + + + deciduous (generic) + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to shed body parts. + PATOC:GVG + + + + + + + + + A quality inhering in a plant by virtue of the bearer's disposition to shed foliage. + quality + PATO:0001731 + + + + deciduous (plant) + + + + + A quality inhering in a plant by virtue of the bearer's disposition to shed foliage. + PATOC:cjm + + + + + + + + + A quality inhering in a plant by virtue of the bearer's disposition to not shed any body part. + quality + PATO:0001732 + + + + non-deciduous (any body part) + + + + + A quality inhering in a plant by virtue of the bearer's disposition to not shed any body part. + PATOC:GVG + + + + + + + + + A quality inhering in a plant by virtue of the bearer's disposition to retain foliage. + quality + PATO:0001733 + + + + evergreen (plant) + + + + + A quality inhering in a plant by virtue of the bearer's disposition to retain foliage. + PATOC:GVG + + + + + + + + + A quality inhering in a plant by virtue of the bearer's disposition to being between evergeen and deciduous. + quality + PATO:0001734 + + + + semi-deciduous(plant) + + + + + A quality inhering in a plant by virtue of the bearer's disposition to being between evergeen and deciduous. + PATOC:cjm + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of liquids. + liquid + quality + PATO:0001735 + liquid configuration + + + + + A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of liquids. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of solids. + solid + quality + PATO:0001736 + + solid configuration + + + + + A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of solids. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of gases. + gas + quality + PATO:0001737 + gaseus configuration + + + + + A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of gases. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking physically interaction with another entity. + dissociated + quality + PATO:0001738 + + + dissociated from + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking physically interaction with another entity. + PATOC:GVG + + + + + + + + + A quality that inheres in an bearer by virtue of how that bearer interacts with radiation. + quality + PATO:0001739 + + radiation quality + + + + + A quality that inheres in an bearer by virtue of how that bearer interacts with radiation. + PATOC:GVG + + + + + + + + + A radiation quality inhering in a radioactive substance by virtue of its transformation (disintegration) rate. + radioactivity + quality + PATO:0001740 + + activity (of a radionuclide) + + + + + A radiation quality inhering in a radioactive substance by virtue of its transformation (disintegration) rate. + PATOC:GVG + + + + + + + + + A radiation quality inhering in bearer by virtue of the bearer's exhibiting or being caused by radioactivity. + quality + PATO:0001741 + + radioactive + + + + + A radiation quality inhering in bearer by virtue of the bearer's exhibiting or being caused by radioactivity. + WordNet:WordNet + + + + + + + + + + A radioactivity which is relatively low. + + high radioactivity + quality + PATO:0001742 + + increased radioactivity + + + + + A radioactivity which is relatively low. + PATOC:GVG + + + + + + + + + + A radioactivity which is relatively high. + + low radioactivity + quality + PATO:0001743 + + decreased radioactivity + + + + + A radioactivity which is relatively high. + PATOC:GVG + + + + + + + + + A radiation quality inhering in a bearer by virtue of what the bearer receives as a result of being exposed to ionizing radiation. + quality + PATO:0001744 + + + radiation exposure + + + + + A radiation quality inhering in a bearer by virtue of what the bearer receives as a result of being exposed to ionizing radiation. + hps:hps + + + + + + + + + A radiation exposure quality inhering in a substance by virtue of the radiation energy "deposited" in a kilogram of a substance. + quality + PATO:0001745 + + + radiation absorbed dose + + + + + A radiation exposure quality inhering in a substance by virtue of the radiation energy "deposited" in a kilogram of a substance. + arpansa:arpansa + + + + + + + + + A radiation exposure quality inhering in a tissue by virtue of the relation between the absorbed dose to the effective biological damage of the radiation to that tissue. + quality + PATO:0001746 + + + radiation equivalent dose + + + + + A radiation exposure quality inhering in a tissue by virtue of the relation between the absorbed dose to the effective biological damage of the radiation to that tissue. + arpansa:arpansa + + + + + + + + + A radiation exposure quality inhering in an organ by virtue of the multiplication of an equivalent dose to that organ multiplied by the tissue weighting factor for that organ. + quality + PATO:0001747 + + + radiation effective dose + + + + + A radiation exposure quality inhering in an organ by virtue of the multiplication of an equivalent dose to that organ multiplied by the tissue weighting factor for that organ. + arpansa:arpansa + + + + + + + + + A shape quality in which a portion of the outermost boundary of an entity folds in space such that a portion that was originally convex is now concave. + quality + PATO:0001748 + + + + invaginated + + + + + A shape quality in which a portion of the outermost boundary of an entity folds in space such that a portion that was originally convex is now concave. + PATOC:GVG + + + + + + + + + A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth. + + hypoplastic growth + pedomorphic growth + quality + PATO:0001749 + + paedomorphic growth + + + + + A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth. + PATOC:mh + + + + + + + + + A paedomorphic growth quality which is due to a delayed onset. + quality + PATO:0001750 + + postdisplaced growth + + + + + A paedomorphic growth quality which is due to a delayed onset. + PATOC:mh + + + + + + + + + A paedomorphic growth quality which is due to an ealier offset. + quality + PATO:0001751 + + progenetic growth + + + + + A paedomorphic growth quality which is due to an ealier offset. + PATOC:mh + + + + + + + + + A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth. + + hyperplastic growth + quality + PATO:0001752 + + peramorphic growth + + + + + A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth. + PATOC:mh + + + + + + + + + A peramorphic growth quality which is due to an increased rate. + quality + PATO:0001753 + + accelerated growth + + + + + A peramorphic growth quality which is due to an increased rate. + PATOC:mh + + + + + + + + + A peramorphic growth quality which is due to an earlier onset. + precocious growth + quality + PATO:0001754 + + predisplaced growth + + + + + A peramorphic growth quality which is due to an earlier onset. + PATOC:mh + + + + + + + + + A peramorphic growth quality which is due to a delayed offset. + quality + PATO:0001755 + + hypermorphic growth + + + + + A peramorphic growth quality which is due to a delayed offset. + PATOC:mh + + + + + + + + + A conductivity quality inhering in a bearer by virtue of the bearer's disposition to spontaneous transfer of thermal energy from a region of higher temperature to a region of lower temperature. + thermal conduction + quality + PATO:0001756 + + + + heat conductivity + + + + + A conductivity quality inhering in a bearer by virtue of the bearer's disposition to spontaneous transfer of thermal energy from a region of higher temperature to a region of lower temperature. + Wikipedia:http://en.wikipedia.org/wiki/Heat_conduction + + + + + + + + + A conductivity quality inhering in a bearer by virtue of the bearer's ability to convey electricity. + quality + PATO:0001757 + + + + electrical conductivity + + + + + A conductivity quality inhering in a bearer by virtue of the bearer's ability to convey electricity. + Wikipedia:http://en.wikipedia.org/wiki/Electrical_conduction + + + + + + + + + A conductivity quality inhering in motor and sensory nerves by virtue of the bearer's ability to convey electricity. + quality + PATO:0001758 + + + + nerve conductivity + + + + + A conductivity quality inhering in motor and sensory nerves by virtue of the bearer's ability to convey electricity. + PATOC:GVG + + + + + + + + + A composition quality inhering in a bearer by virtue of the bearer's containing granules. + quality + PATO:0001759 + + + granular + + + + + A composition quality inhering in a bearer by virtue of the bearer's containing granules. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + + quality + PATO:0001760 + + + female semi-fertile + + + + + + + + + + quality + PATO:0001761 + + + male semi-fertile + + + + + + + + + + quality + PATO:0001762 + + + male semi-sterile + + + + + + + + + + quality + PATO:0001763 + + + female semi-sterile + + + + + + + + + + An age which is high relative to the normal or average. + + high age + quality + PATO:0001764 + + increased age + + + + + An age which is high relative to the normal or average. + PATOC:GVG + + + + + + + + + + An age which is low relative to the normal or average. + + low age + quality + PATO:0001765 + + decreased age + + + + + An age which is low relative to the normal or average. + PATOC:GVG + + + + + + + + A cellular quality inhering in a cell by virtue of its anisotropic intracellular organization. + PATO:0001769 + quality + PATO:0001766 + + + obsolete cellular polarity + true + + + + + A cellular quality inhering in a cell by virtue of its anisotropic intracellular organization. + PATOC:GVG + + + + + + + + + quality + PATO:0001767 + + + semi-fertile + + + + + + + + + A viability quality inhering in a bearer or a population by virtue of some of it's members' inability to survive to reproduce. + quality + PATO:0001768 + + + semi-lethal (sensu genetics) + + + + + A viability quality inhering in a bearer or a population by virtue of some of it's members' inability to survive to reproduce. + PATOC:CVC + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an axis. + quality + cellular polarity + PATO:0001769 + + positional polarity + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an axis. + PATOC:MAH + + + + + cellular polarity + PATOC:MAH + + + + + + + + + A viability quality inhering in a population by virtue of some of it's members' ability to survive. + quality + PATO:0001770 + + + semi-viable + + + + + A viability quality inhering in a population by virtue of some of it's members' ability to survive. + PATOC:CVC + + + + + + + + + + true + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being extended on all sides of another entity simultaneously. + encircling + enclosing + wrapping + quality + PATO:0001772 + + + Nedd to add reciprocal of relationship to 'surrounded by' PATO:0005016. + surrounding + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being extended on all sides of another entity simultaneously. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having only one phase or stage. + quality + PATO:0001773 + + monophasic + + + + + A quality inhering in a bearer by virtue of the bearer's having only one phase or stage. + hefreedictionary.com:hefreedictionary.com + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having or existing in many phases. + quality + PATO:0001774 + + polyphasic + + + + + A quality inhering in a bearer by virtue of the bearer's having or existing in many phases. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the dorsal-ventral axis. + quality + PATO:0001775 + + dorsal-ventral polarity + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the dorsal-ventral axis. + PATOC:MAH + + + + + + + + + + A flexibility which is relatively high. + + high flexibility + quality + PATO:0001776 + + + increased flexibility + + + + + A flexibility which is relatively high. + PATOC:GVG + + + + + + + + + + A flexibility which is relatively low. + + low flexibility + quality + PATO:0001777 + + + decreased flexibility + + + + + A flexibility which is relatively low. + PATOC:GVG + + + + + + + + + + A strength which is relatively high. + + high strength + quality + PATO:0001778 + + increased strength + + + + + A strength which is relatively high. + PATOC:GVG + + + + + + + + + + A strength which is relatively low. + + weak + quality + PATO:0001779 + + decreased strength + + + + + A strength which is relatively low. + PATOC:GVG + + + + + + + + + A size quality inhering in a bearer by virtue of the bearer's being abnormally developed, usually due to malnutrition. + dystrophied + quality + dystrophy + PATO:0001780 + + + dystrophic + + + + + A size quality inhering in a bearer by virtue of the bearer's being abnormally developed, usually due to malnutrition. + Wiikipedia:Wiikipedia + + + + + + + + + A thickness quality which lacks pattern. + quality + PATO:0001781 + irregular thickness + + + + + A thickness quality which lacks pattern. + PATOC:GVG + + + + + + + + + + An intensity which is relatively high. + + high intensity + quality + PATO:0001782 + + increased intensity + + + + + An intensity which is relatively high. + PATOC:GVG + + + + + + + + + + An intensity which is relatively low. + + low intensity + quality + PATO:0001783 + + decreased intensity + + + + + An intensity which is relatively low. + PATOC:GVG + + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's being divided into two branches. + PATO:0001572 + bifid + quality + forked + PATO:0001784 + + + + bifurcated + + + + + A branched quality inhering in a bearer by virtue of the bearer's being divided into two branches. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outward. + flared + quality + PATO:0001785 + + + TODO: obsolete, definition too ambiguous. + splayed + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outward. + PATOC:GVG + + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions. + clefted + septate + quality + divided + forked + subdivided + PATO:0001786 + + + split + + + + + A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions. + die.net:die.net + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis. + quality + PATO:0001787 + + rotational curvature + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis. + PATOC:GVG + + + + + + + + + + A density which is higher relative to the normal or average. + + high density + quality + PATO:0001788 + + increased mass density + + + + + A density which is higher relative to the normal or average. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's having a shape resembling a dome. + quality + PATO:0001789 + + + + domed + + + + + A curvature quality inhering in a bearer by virtue of the bearer's having a shape resembling a dome. + PATOC:GVG + + + + + + + + + + A density which is lower relative to the normal or average. + + low density + quality + PATO:0001790 + + decreased mass density + + + + + A density which is lower relative to the normal or average. + PATOC:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being confined or restricted to multiple locations. + multi-focal + quality + PATO:0001791 + + + multi-localised + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being confined or restricted to multiple locations. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located on left side of from the a another entity. + quality + PATO:0001792 + + + + left side of + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located on left side of from the a another entity. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located on right side of a another entity. + quality + PATO:0001793 + + + + right side of + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located on right side of a another entity. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being wound in a continuous series of loops. + quality + PATO:0001794 + + coiling + + + + + A shape quality inhering in a bearer by virtue of the bearer's being wound in a continuous series of loops. + Online_Dictionary:Online_Dictionary + + + + + + + + + + A coiling which is relatively high. + + high coiling + quality + PATO:0001795 + + + increased coiling + + + + + A coiling which is relatively high. + PATOC:GVG + + + + + + + + + + A coiling which is relatively low. + + low coiling + quality + PATO:0001796 + + + decreased coiling + + + + + A coiling which is relatively low. + PATOC:GVG + + + + + + + + + + true + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length. + quality + tightly curled + twisted + PATO:0001798 + + + kinked + + + + + A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's exhibiting disturbance of its smoothness or regularity. + quality + PATO:0001799 + + + ruffled + + + + + A shape quality inhering in a bearer by virtue of the bearer's exhibiting disturbance of its smoothness or regularity. + .thefreedictionary.com:.thefreedictionary.com + + + + + + + + + A composition quality inhering in an bearer by virtue of the quantities or relative ratios of water of the inhering entity. + quality + PATO:0001800 + + + water composition + + + + + A composition quality inhering in an bearer by virtue of the quantities or relative ratios of water of the inhering entity. + PATOC:GVG + + + + + + + + + + A composition quality inhering in an bearer by virtue of the reduction in amount of water the bearer contains. + dehydrated + quality + dry + PATO:0001801 + + decreased water composition + + + + + A composition quality inhering in an bearer by virtue of the reduction in amount of water the bearer contains. + Wikipedia:http://en.wikipedia.org/wiki/Dehydrated + + + + + + + + + A pattern quality inhering in a bearer by virtue of the bearer's not being compact or dense in arrangement. + quality + PATO:0001802 + + loose + + + + + A pattern quality inhering in a bearer by virtue of the bearer's not being compact or dense in arrangement. + answers.com:answers.com + + + + + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's disposition to being susceptible to damage by light. + quality + PATO:0001803 + + + phototoxic + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's disposition to being susceptible to damage by light. + answers.com:answers.com + + + + + + + + + A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with scales. + quality + squamous + PATO:0001804 + + + scaly + + + + + A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with scales. + answers.com:answers.com + + + + + + + + + A texture quality inhering in a bearer by virtue of the bearer's formed or tending to form flakes or thin, crisp fragments. + quality + PATO:0001805 + + + flaky + + + + + A texture quality inhering in a bearer by virtue of the bearer's formed or tending to form flakes or thin, crisp fragments. + answers.com:answers.com + + + + + + + + + A sensitivity quality inhering in a bearer by virtue of the bearer's exposure to radiation. + quality + PATO:0001806 + + + + sensitivity to irradiation + + + + + A sensitivity quality inhering in a bearer by virtue of the bearer's exposure to radiation. + PATOC:GVG + + + + + + + + + + A sensitivity to irradiation which is relatively low. + + low sensitivity to irradiation + quality + PATO:0001807 + + + decreased sensitivity to irradiation + + + + + A sensitivity to irradiation which is relatively low. + PATOC:GVG + + + + + + + + + + A sensitivity to irradiation which is relatively high. + + high sensitivity to irradiation + quality + PATO:0001808 + + + increased sensitivity to irradiation + + + + + A sensitivity to irradiation which is relatively high. + PATOC:GVG + + + + + + + + + A pattern quality inhering in a bearer by virtue of the bearer's being compact or dense in arrangement. + quality + PATO:0001809 + + tight + + + + + A pattern quality inhering in a bearer by virtue of the bearer's being compact or dense in arrangement. + PATOC:GVG + + + + + + + + + A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by one or more creases in a normally smooth surface. + quality + PATO:0001810 + + + wrinkled + + + + + A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by one or more creases in a normally smooth surface. + url:http://www.thefreedictionary.com/wrinkled + + + + + + + + A relaxation which is relatively high. + high relaxation + quality + PATO:0001811 + + GO has now relevant relation terms which should be used instead. + obsolete increased relaxation + true + + + + + A relaxation which is relatively high. + PATOC:GVG + + + + + + + + A relaxation which is relatively low. + low relaxation + quality + PATO:0001812 + + GO has now relevant relation terms which should be used instead. + obsolete decreased relaxation + true + + + + + A relaxation which is relatively low. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lack elastic tension that facilitate response to stimuli. + quality + PATO:0001813 + + + atonicity + + + + + A structural quality inhering in a bearer by virtue of the bearer's lack elastic tension that facilitate response to stimuli. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's impaired elastic tension that facilitate response to stimuli. + quality + PATO:0001814 + + + dystonicity + + + + + A structural quality inhering in a bearer by virtue of the bearer's impaired elastic tension that facilitate response to stimuli. + PATOC:GVG + + + + + + + + + A strength quality inhering in a bearer by virtue of the bearer's disposition to lose strength. + quality + PATO:0001815 + + + + fatigability + + + + + A strength quality inhering in a bearer by virtue of the bearer's disposition to lose strength. + WordNet:WordNet + + + + + + + + + + A fatigability which is relatively high. + + high fatigability + quality + PATO:0001816 + + + increased fatigability + + + + + A fatigability which is relatively high. + PATOC:GVG + + + + + + + + + + A fatigability which is relatively low. + + low fatigability + quality + PATO:0001817 + + + decreased fatigability + + + + + A fatigability which is relatively low. + PATOC:GVG + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time. + + quality + PATO:0001818 + + + + progressive + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time. + PATOC:GVG + + + + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's absence or closure of a normal body orifice or tubular passage. + atresia + quality + PATO:0001819 + + + atretic + + + + + A morphological quality inhering in a bearer by virtue of the bearer's absence or closure of a normal body orifice or tubular passage. + answers.com:answers.com + + + + + + + + + + true + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having no opening. + + unperforated + quality + PATO:0001821 + + + imperforate + + + + + A structural quality inhering in a bearer by virtue of the bearer's having no opening. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A quality inhering in a bearer by virtue of whether the bearer's being covered by a liquid. + quality + PATO:0001822 + + + + wetness + + + + + A quality inhering in a bearer by virtue of whether the bearer's being covered by a liquid. + wordreference.com:wordreference.com + + + + + + + + + + A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid. + + quality + PATO:0001823 + + + wet + + + + + A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid. + PATOC:GVG + + + + + + + + + A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid. + + quality + PATO:0001824 + + + dry + + + + + A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid. + PATOC:GVG + + + + + + + + + + A wetness quality that is relatively high. + + quality + PATO:0001825 + + increased wetness + + + + + A wetness quality that is relatively high. + PATOC:GVG + + + + + + + + + + A wetness quality that is relatively low. + + low wetness + quality + PATO:0001826 + + decreased wetness + + + + + A wetness quality that is relatively low. + PATOC:GVG + + + + + + + + + A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of one sex and external sexual characteristics of the other sex. + quality + PATO:0001827 + + pseudohermaphrodite + + + + + A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of one sex and external sexual characteristics of the other sex. + WordNet:WordNet + + + + + + + + + A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of male and external sexual characteristics of female. + quality + PATO:0001828 + + male pseudohermaphrodite + + + + + A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of male and external sexual characteristics of female. + PATOC:GVG + + + + + + + + + A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of female and external sexual characteristics of male. + quality + PATO:0001829 + + female pseudohermaphrodite + + + + + A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of female and external sexual characteristics of male. + PATOC:GVG + + + + + + + + + + A female fertility which is relatively low. + + low female fertility + quality + PATO:0001830 + + + decreased female fertility + + + + + A female fertility which is relatively low. + PATOC:GVG + + + + + + + + + + A female fertility which is relatively high. + + high female fertility + quality + PATO:0001831 + + + increased female fertility + + + + + A female fertility which is relatively high. + PATOC:GVG + + + + + + + + + + A male fertility which is relatively high. + + high male fertility + quality + PATO:0001832 + + + increased male fertility + + + + + A male fertility which is relatively high. + PATOC:GVG + + + + + + + + + + A male fertility which is relatively low. + + low male fertility + quality + PATO:0001833 + + + decreased male fertility + + + + + A male fertility which is relatively low. + PATOC:GVG + + + + + + + + + + A fertility which is relatively low. + + low fertility + quality + PATO:0001834 + + + decreased fertility + + + + + A fertility which is relatively low. + PATOC:GVG + + + + + + + + + + A fertility which is relatively high. + + high fertility + quality + PATO:0001835 + + + increased fertility + + + + + A fertility which is relatively high. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer with some kind of aperture or opening that is blocked or clogged. + quality + PATO:0001836 + + + congested + + + + + A structural quality inhering in a bearer with some kind of aperture or opening that is blocked or clogged. + answers.com:answers.com + + + + + + + + + + true + + + + + + + + + + A flow that is relatively low. + + low flow + quality + PATO:0001838 + + decreased fluid flow + + + + + A flow that is relatively low. + PATOC:GVG + + + + + + + + + + A fluid flow that is relatively high. + + high flow + quality + PATO:0001839 + + increased fluid flow + + + + + A fluid flow that is relatively high. + PATOC:GVG + + + + + + + + + + true + + + + + + + + + An intensity which is characterized by temporary abatement in severity. + quality + PATO:0001841 + + + + remittent intensity + + + + + An intensity which is characterized by temporary abatement in severity. + answers.com:answers.com + + + + + + + + + A concentration quality inhering in a bearer by virtue of the bearer's containing acid (hydrogen ions). + pH + quality + PATO:0001842 + + + acidity + + + + + A concentration quality inhering in a bearer by virtue of the bearer's containing acid (hydrogen ions). + biology-online:biology-online + + + + + + + + + + An acidity which is relatively low. + + low acidity + quality + PATO:0001843 + + decreased acidity + + + + + An acidity which is relatively low. + PATOC:GVG + + + + + + + + + + An acidity which is relatively high. + + high acidity + quality + PATO:0001844 + + increased acidity + + + + + An acidity which is relatively high. + PATOC:GVG + + + + + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm lacking pattern. + quality + PATO:0001845 + + irregular rhythm + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm lacking pattern. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel. + quality + PATO:0001846 + + + tangled + + + + + A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel. + answers.com:answers.com + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically. + PATO:0001837 + stenosis + stenotic + stricture + quality + PATO:0001847 + + constricted + + + + + A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically. + WordNet:WordNet + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved asymmetrically. + quality + PATO:0001848 + + + asymmetrically curved + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved asymmetrically. + PATOC:GVG + + + + + + + + + A texture quality inhering in a bearer by virtue of a portion of the bearer's surface being scraped away. + quality + PATO:0001849 + + abrased + + + + + A texture quality inhering in a bearer by virtue of a portion of the bearer's surface being scraped away. + answers.com:answers.com + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being fibrous tissue that replaces normal tissue destroyed by injury or disease. + quality + PATO:0001850 + + + scarred + + + + + A structural quality inhering in a bearer by virtue of the bearer's being fibrous tissue that replaces normal tissue destroyed by injury or disease. + answers.com:answers.com + + + + + + + + + + + + + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's exhibiting transient abnormal enlargement, not due to cell proliferation. + swelling + quality + PATO:0001851 + + + swollen + + + + + A structure quality inhering in a bearer by virtue of the bearer's exhibiting transient abnormal enlargement, not due to cell proliferation. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position. + PATO:0001479 + PATO:0002158 + PATO:0002159 + dislocation + luxated + luxation + relational dislocated quality + quality + PATO:0001852 + + + dislocated + + + + + A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of cerebral spinal fluid. + quality + PATO:0001853 + + hydrocephalic + + + + + A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of cerebral spinal fluid. + PATOC:mh + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being situated at right angles to the horizon. + quality + PATO:0001854 + + vertical + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being situated at right angles to the horizon. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being in the plane of the horizon. + quality + PATO:0001855 + + horizontal + + + + + A positional quality inhering in a bearer by virtue of the bearer's being in the plane of the horizon. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being turned inward upon itself. + quality + PATO:0001856 + + For example, a tubular organ or part. + introverted + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being turned inward upon itself. + die.net:die.net + + + + + + + + + A shape quality in a bearer by virtue of the bearer's curving inward. + + quality + PATO:0001857 + + + concave + + + + + A shape quality in a bearer by virtue of the bearer's curving inward. + WordNet:WordNet + + + + + + + + + A functionality quality inhering in a bearer by virtue of being not completely paralysed. + quality + PATO:0001858 + + partially paralysed + + + + + A functionality quality inhering in a bearer by virtue of being not completely paralysed. + PATOC:GVG + + + + + + + + + + A coordination which is relatively high. + + high coordination + quality + PATO:0001859 + + + increased coordination + + + + + A coordination which is relatively high. + PATOC:GVG + + + + + + + + + + A coordination which is relatively low. + + low coordination + quality + PATO:0001860 + + + decreased coordination + + + + + A coordination which is relatively low. + PATOC:GVG + + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve. + + fascicled + quality + PATO:0001861 + + + fasciculated + + + + + A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve. + answers.com:answers.com + + + + + + + + + A fertility quality inhering in a bearer by virtue of the bearer's disposition to make its offspring sterile. + quality + grandchildless + PATO:0001862 + + + lack of fertility in offspring + + + + + A fertility quality inhering in a bearer by virtue of the bearer's disposition to make its offspring sterile. + PATOC:GVG + + + + + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration. + + quality + PATO:0001863 + + + + chronic + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration. + PATOC:cjm + + + + + + + + + + true + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. Includes spheres and oblate/prolate spheroids. + PATO:0001864 + quality + sphericality + PATO:0001865 + + + + spheroid + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. Includes spheres and oblate/prolate spheroids. + Wikipedia:http://en.wikipedia.org/wiki/Spheroid + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a polar diameter longer than its equatorial diameter. + Image:http://upload.wikimedia.org/wikipedia/commons/8/88/ProlateSpheroid.png + quality + prolate spheroid + PATO:0001866 + + + prolate + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a polar diameter longer than its equatorial diameter. + Wikipedia:http://en.wikipedia.org/wiki/Prolate + + + + + + + + + A shape quality inhering in a bearer by virtue of it being a quadrilateral polygon in which all four angles are right angles. + Image:http://upload.wikimedia.org/wikipedia/en/e/ee/Shaperec.svg + quality + PATO:0001867 + + + rectangular + + + + + A shape quality inhering in a bearer by virtue of it being a quadrilateral polygon in which all four angles are right angles. + Wikipedia:http://en.wikipedia.org/wiki/Rectangular + + + + + + + + + A fluorescence quality inhering in a bearer by virtue of the bearer's exhibiting fluorescence which is self-induced. + quality + PATO:0001868 + + autofluorescence + + + + + A fluorescence quality inhering in a bearer by virtue of the bearer's exhibiting fluorescence which is self-induced. + PATOC:mb + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being abnormal and having a destructive effect on living tissue. + quality + PATO:0001869 + + + pathological + + + + + A quality inhering in a bearer by virtue of the bearer's being abnormal and having a destructive effect on living tissue. + PATOC:cjm + + + + + + + + + A shape quality inhering in a circular disk by virtue of the bearer's having a segment of another circle removed from its edge, so that what remains is a shape enclosed by two circular arcs of different diameters which intersect at two points (usually in such a manner that the enclosed shape does not include the center of the original circle). + Image:http://upload.wikimedia.org/wikipedia/commons/7/74/Crescent.svg + crescentic + quality + bow-shaped + lunate + PATO:0001870 + + + crescent-shaped + + + + + A shape quality inhering in a circular disk by virtue of the bearer's having a segment of another circle removed from its edge, so that what remains is a shape enclosed by two circular arcs of different diameters which intersect at two points (usually in such a manner that the enclosed shape does not include the center of the original circle). + Wikipedia:http://en.wikipedia.org/wiki/Crescent + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having the shape of a kidney. + kidney-shaped + quality + bean shaped + PATO:0001871 + + reniform + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having the shape of a kidney. + ISBN:0881923214 + + + + + + + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resemblance to a cube (a 3-D shape with a square cross section). + cuboidal + quality + block-like + PATO:0001872 + + + cuboid + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resemblance to a cube (a 3-D shape with a square cross section). + PATOC:MAH + + + + + + + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a consistently-sized round cross section. + PATO:0001203 + rod-like + rod-shaped + tubulate + quality + PATO:0001873 + + + cylindrical + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a consistently-sized round cross section. + PATOC:MAH + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being cylindrical, in which the height is less than the diameter. + disc-shaped + disk-shaped + quality + PATO:0001874 + + + discoid + + + + + A shape quality inhering in a bearer by virtue of the bearer's being cylindrical, in which the height is less than the diameter. + PATOC:cjm + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having three angles. + deltoid + quality + delta shaped + triangle + triangle-shaped + PATO:0001875 + + + triangular + + + + + A shape quality inhering in a bearer by virtue of the bearer's having three angles. + wordreference:wordreference + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two parts, roughly spherical and of equal size, connected by a bar. + quality + PATO:0001876 + + + dumbbell-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two parts, roughly spherical and of equal size, connected by a bar. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle; attached at the broad end. + spear-shaped + quality + PATO:0001877 + + + lanceolate + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle; attached at the broad end. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped. + S-shaped + sigmoidal + quality + PATO:0001878 + + + sigmoid + + + + + A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped. + PATOC:CJM + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter U. + horseshoe shaped + horseshoe + quality + PATO:0001879 + + + U-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter U. + WordNet:WordNet + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having a tail or tail-like projection. + caudal + quality + tailed + PATO:0001880 + + caudate + + + + + A quality inhering in a bearer by virtue of the bearer's having a tail or tail-like projection. + PATOC:cjm + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's forming two equal obtuse triangles with a short side in common. + sagittate + quality + PATO:0001881 + + + Gradually enlarged at the base, like the head of an arrow. + arrow-shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's forming two equal obtuse triangles with a short side in common. + ISBN:0881923214 + RKC:RKC + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a slug. + quality + PATO:0001882 + + + limaciform + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a slug. + PATOC:CJM + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's gradually becoming thicker towards the end. + PATO:0001797 + club-like + club-shaped + clubbed + quality + PATO:0001883 + + clavate + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's gradually becoming thicker towards the end. + MP:0000576 + + + + + + + + + + A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water. + + quality + PATO:0001884 + + + hydrophobicity + + + + + A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water. + WordNet:WordNet + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water. + + quality + PATO:0001885 + + + hydrophobic + + + + + A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water. + WordNet:WordNet + + + + + + + + + A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water. + + quality + PATO:0001886 + + + hydrophilicity + + + + + A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water. + answers.com:answers.com + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water. + + quality + PATO:0001887 + + + hydrophilic + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water. + WordNet:WordNet + + + + + + + + + A quality of a liquid inhering in a bearer by virtue of the bearer's ability to mix with (dissolve in) another liquid. + quality + PATO:0001888 + + + miscibility + + + + + A quality of a liquid inhering in a bearer by virtue of the bearer's ability to mix with (dissolve in) another liquid. + Chemicool:Chemicool + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having the border, edge, or outline cut into a series of segments of circles resembling a scallop-shell. + crenate + crenulate + quality + PATO:0001889 + + + scalloped + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having the border, edge, or outline cut into a series of segments of circles resembling a scallop-shell. + Oxford:EnglishDictionary + + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being divided into three branches. + trifurcate + quality + PATO:0001890 + + + tripartite + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being divided into three branches. + InfoVisual:InfoVisual + + + + + + + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; egg-shaped. + egg-shaped + oval + ovoid + quality + eccentric + PATO:0001891 + + + + ovate + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; egg-shaped. + PATOC:mc + + + + + + + + + + An odor quality of having decreased odor. + + quality + PATO:0001892 + + decreased odor + + + + + An odor quality of having decreased odor. + PATOC:GVG + + + + + + + + + + An odor quality of having increased odor. + + quality + PATO:0001893 + + increased odor + + + + + An odor quality of having increased odor. + PATOC:GVG + + + + + + + + + An organismal quality inhering in a bearer by virtue of the bearer's physical expression of sexual characteristics. + quality + PATO:0001894 + + phenotypic sex + + + + + + + + + A biological sex quality inhering in an individual or a population that undergo sexual reproduction. + quality + PATO:0001895 + + mating type + + + + + A biological sex quality inhering in an individual or a population that undergo sexual reproduction. + wikipedia:wikipedia + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. + + quality + PATO:0001896 + + unlumenized + + + + + A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. + PATOC:MAH + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's having a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. + + quality + PATO:0001897 + + See GO term: GO:0031974 membrane-enclosed lumen [DEF:"The enclosed volume within a sealed membrane or between two sealed membranes"]. + lumenized + + + + + A structure quality inhering in a bearer by virtue of the bearer's having a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. + PATOC:MAH + + + + + + + + + + A circumference which is relatively high. + + quality + PATO:0001898 + + increased circumference + + + + + A circumference which is relatively high. + PATOC:GVG + + + + + + + + + + A circumference which is relatively low. + + quality + PATO:0001899 + + decreased circumference + + + + + A circumference which is relatively low. + PATOC:GVG + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north. + + quality + PATO:0001900 + + front + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north. + PATOC:GVG + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south. + + quality + PATO:0001901 + + back + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south. + PATOC:GVG + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's having one direction only. + quality + PATO:0001902 + + unidirectional + + + + + A directional quality inhering in a bearer by virtue of the bearer's having one direction only. + PATOC:GVG + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's having two directions. + quality + PATO:0001903 + + bi-directional + + + + + A directional quality inhering in a bearer by virtue of the bearer's having two directions. + PATOC:GVG + + + + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction approximating the shape of a circle. + quality + PATO:0001904 + + circling direction + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction approximating the shape of a circle. + PATOC:GVG + + + + + + + + + + + + + + + The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. + having physical part + quality + PATO:0001905 + + has normal numbers of parts of type + + + + + The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. + PATOC:CJM + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's participation in movement. + quality + PATO:0001906 + + movement quality + + + + + A physical quality inhering in a bearer by virtue of the bearer's participation in movement. + PATOC:GVG + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's being like the surface of a compact mass of grapes. + quality + PATO:0001907 + + botryoidal + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's being like the surface of a compact mass of grapes. + PATOC:cvs + + + + + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus. + quality + PATO:0001908 + + + multinucleate + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus. + PATOC:GVG + + + + + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having three nuclei. + quality + PATO:0001909 + + + trinucleate + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having three nuclei. + thefreedictionary:thefreedictionary + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's one part being layered over another connected part. + quality + PATO:0001910 + + folded + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's one part being layered over another connected part. + PATOC:cjm + + + + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting movement in a circular course. + quality + PATO:0001911 + + circling + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting movement in a circular course. + PATOC:mb + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the state of bearer's mechanical, physical, and biochemical processes. + quality + PATO:0001912 + physiological state + + + + + A quality of a single process inhering in a bearer by virtue of the state of bearer's mechanical, physical, and biochemical processes. + PATOC:mb + + + + + + + + + A physiological state which is characterized by periods of high-frequency high amplitude electrical activity in neuronal tissue. + quality + PATO:0001913 + ictal + + + + + A physiological state which is characterized by periods of high-frequency high amplitude electrical activity in neuronal tissue. + PATOC:mb + + + + + + + + + A physiological state which is characterized by normal electrical activity in neuronal tissue. + quality + PATO:0001914 + non-ictal + + + + + A physiological state which is characterized by normal electrical activity in neuronal tissue. + PATOC:mb + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and upper surface of an organism relative to another entity. + quality + PATO:0001915 + + + anterodorsal to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and upper surface of an organism relative to another entity. + PATOC:wd + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and upper surface of an organism relative to another entity. + quality + PATO:0001916 + + + posterodorsal to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and upper surface of an organism relative to another entity. + PATOC:wd + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and abdomen of an organism relative to another entity. + quality + PATO:0001917 + + + anteroventral to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and abdomen of an organism relative to another entity. + PATOC:wd + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and abdomen of an organism relative to another entity. + quality + PATO:0001918 + + + posteroventral to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and abdomen of an organism relative to another entity. + PATOC:wd + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the back or upper surface of an organism. + quality + PATO:0001919 + + mislocalised dorsally + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the back or upper surface of an organism. + PATOC:mb + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the abdomen of an organism. + quality + PATO:0001920 + + mislocalised ventrally + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the abdomen of an organism. + PATOC:mb + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the front of an organism. + quality + PATO:0001921 + + mislocalised anteriorly + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the front of an organism. + PATOC:mb + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the rear of an organism. + quality + PATO:0001922 + + mislocalised posteriorly + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the rear of an organism. + PATOC:mb + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the side of an organism. + quality + PATO:0001923 + + mislocalised laterally + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the side of an organism. + PATOC:mb + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the middle of an organism. + quality + PATO:0001924 + + mislocalised medially + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the middle of an organism. + PATOC:mb + + + + + + + + + A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell. + quality + PATO:0001925 + + This quality either inheres directly in the surface, or in the entity that has the surface. For example, to say that a particular fly wing is curved is shorthand for saying the wing has a surface which is curved. + surface feature shape + + + + + A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell. + PATOC:CJM + + + + + + + + + + A fluorescence which is higher than normal. + + high fluorescence + quality + PATO:0001926 + + increased fluorescence + + + + + A fluorescence which is higher than normal. + PATOC:GVG + + + + + + + + + + A fluorescence which is lower than normal. + + low fluorescence + quality + PATO:0001927 + + decreased fluorescence + + + + + A fluorescence which is lower than normal. + PATOC:GVG + + + + + + + + + A texture quality inhering in a bearer by virtue of a local accumulation of fluid underneath the surface of the bearer. + blistering + quality + PATO:0001928 + + + blistered + + + + + A texture quality inhering in a bearer by virtue of a local accumulation of fluid underneath the surface of the bearer. + PATOC:GVG + + + + + + + + + + + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits shape variation or change. + quality + PATO:0001929 + + variability of shape + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits shape variation or change. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape. + + quality + PATO:0001930 + + variant shape + + + + + A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape. + + quality + PATO:0001931 + + invariant shape + + + + + A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape. + PATOC:GVG + + + + + + + + + A pattern quality inhering in a bearer by virtue of the bearer's being placed alternately one above the other. + quality + PATO:0001932 + + alternate placement + + + + + A pattern quality inhering in a bearer by virtue of the bearer's being placed alternately one above the other. + ISBN:0881923214 + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned on opposite sides on the same plane. + quality + PATO:0001933 + + + opposite + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned on opposite sides on the same plane. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being perfectly circular. + quality + PATO:0001934 + + orbicular + + + + + A shape quality inhering in a bearer by virtue of the bearer's being perfectly circular. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being roundish, a little inclining to be oblong. + roundish + quality + PATO:0001935 + + obtuse + + + + + A shape quality inhering in a bearer by virtue of the bearer's being roundish, a little inclining to be oblong. + ISBN:0881923214 + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's being egg-shaped and flat, with the narrow end attached to the base. + quality + obovoid + PATO:0001936 + + obovate + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's being egg-shaped and flat, with the narrow end attached to the base. + wordreference:wordreference + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being oblong, with the lower end very much attenuated. + spathulate + quality + PATO:0001937 + + spatulate + + + + + A shape quality inhering in a bearer by virtue of the bearer's being oblong, with the lower end very much attenuated. + ISBN:0881923214 + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's being oval and a little angular in the middle. + quality + PATO:0001938 + + rhomboid + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's being oval and a little angular in the middle. + ISBN:0881923214 + + + + + + + + + + true + + + + + + + + + A size quality inhering in a bearer by virtue of the bearer's being many folds greater relative to the normal average. + giant + quality + PATO:0001940 + + gigantic + + + + + A size quality inhering in a bearer by virtue of the bearer's being many folds greater relative to the normal average. + PATOC:UMH + + + + + + + + + A color consisting of yellow and green hues. + quality + PATO:0001941 + + + yellow green + + + + + A color consisting of yellow and green hues. + PATOC:GVG + + + + + + + + + A color consisting of brown and green hues. + olive green + quality + PATO:0001942 + brown green + + + + + A color consisting of brown and green hues. + PATOC:GVG + + + + + + + + + A purple color which has low saturation and low brightness. + quality + PATO:0001943 + + + lilac + + + + + A purple color which has low saturation and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of yellow and orange hue. + quality + PATO:0001944 + + + yellow orange + + + + + A color consisting of yellow and orange hue. + PATOC:GVG + + + + + + + + + A moderate yellow-orange to orange color. + quality + PATO:0001945 + + ochre + + + + + A moderate yellow-orange to orange color. + wordreference:wordreference + + + + + + + + + A color pattern inhering in a bearer by virtue of bearer's exhibiting transverse stripes of one hue or degree of saturation crossing another. + striped + quality + PATO:0001946 + + banded + + + + + A color pattern inhering in a bearer by virtue of bearer's exhibiting transverse stripes of one hue or degree of saturation crossing another. + ISBN:0881923214 + + + + + + + + + A color pattern inhering in a bearer by virtue of bearer's being covered with reticulated lines of a different hue or degree of saturation. + net-like + reticulated + quality + PATO:0001947 + + netted + + + + + A color pattern inhering in a bearer by virtue of bearer's being covered with reticulated lines of a different hue or degree of saturation. + ISBN:0881923214 + + + + + + + + + A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by two or more parallel channels. + quality + fluted + PATO:0001948 + + furrowed + + + + + A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by two or more parallel channels. + PATOC:JE + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly in a little point. + quality + PATO:0001949 + + pointleted + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly in a little point. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating gradually in a rounded end. + quality + PATO:0001950 + + blunt + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating gradually in a rounded end. + ISBN:0881923214 + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being in opposition round a common axis. + quality + PATO:0001951 + + whorled + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being in opposition round a common axis. + ISBN:0881923214 + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being arranged in two opposite rows (and hence in the same plane). + quality + PATO:0001952 + + distichous + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being arranged in two opposite rows (and hence in the same plane). + ISBN:0881923214 + + + + + + + + + A pattern quality inhering in a bearer by virtue of the bearer's consisting of paired parts that alternately cross each other. + crosscutting + intercrossing + intersecting + quality + PATO:0001953 + + decussate + + + + + A pattern quality inhering in a bearer by virtue of the bearer's consisting of paired parts that alternately cross each other. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being linear, very narrow, tapering to a very fine point from a narrow base. + awl-shaped + needle-like + quality + PATO:0001954 + + subulate + + + + + A shape quality inhering in a bearer by virtue of the bearer's being linear, very narrow, tapering to a very fine point from a narrow base. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being narrowly triangular, wider at the apex and tapering toward the base. + wedge-shaped + quality + PATO:0001955 + + cuneate + + + + + A shape quality inhering in a bearer by virtue of the bearer's being narrowly triangular, wider at the apex and tapering toward the base. + wordreference:wordreference + + + + + + + + + + + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits size variation or change. + quality + PATO:0001956 + + variability of size + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits size variation or change. + PATOC:GVG + + + + + + + + + + A variability of size which is relatively low. + + low variability of size + quality + PATO:0001957 + + decreased variability of size + + + + + A variability of size which is relatively low. + PATOC:GVG + + + + + + + + + + A variability of size which is relatively high. + + high variability of size + quality + PATO:0001958 + + increased variability of size + + + + + A variability of size which is relatively high. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated. + + quality + PATO:0001959 + + defasciculated + + + + + A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated. + PATOC:mw + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's parts or projections being interlocked; for example, the fingers of two hands that are clasped. + quality + PATO:0001960 + + interdigitated + + + + + A shape quality inhering in a bearer by virtue of the bearer's parts or projections being interlocked; for example, the fingers of two hands that are clasped. + PATOC:wdahdul + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's touching another entity. + quality + contiguous + PATO:0001961 + + + in contact with + + + + + A structural quality inhering in a bearer by virtue of the bearer's touching another entity. + PATOC:wdahdul + + + + + + + + + A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled inwards spirally on each side. + quality + PATO:0001962 + + involute + + + + + A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled inwards spirally on each side. + ISBN:0881923214 + + + + + + + + + A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled backwards spirally on each side. + quality + PATO:0001963 + + revolute + + + + + A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled backwards spirally on each side. + ISBN:0881923214 + + + + + + + + + A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled spirally downwards. + quality + PATO:0001964 + + circinate + + + + + A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled spirally downwards. + ISBN:0881923214 + + + + + + + + + A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being bent down upon their stalk. + quality + PATO:0001965 + + reclinate + + + + + A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being bent down upon their stalk. + ISBN:0881923214 + + + + + + + + + A curled quality inhering in a bearer by virtue of the bearer's one edge of its surface being wholly rolled up in another. + quality + PATO:0001966 + + convolute + + + + + A curled quality inhering in a bearer by virtue of the bearer's one edge of its surface being wholly rolled up in another. + ISBN:0881923214 + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's having three or more primary branches diverging radially from a single point. + quality + PATO:0001967 + + actinodromous + + + + + A branched quality inhering in a bearer by virtue of the bearer's having three or more primary branches diverging radially from a single point. + Hickey:1988 + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's having two or more parallel primary branches originate beside each other and converge apically. + quality + PATO:0001968 + + parallelodromous + + + + + A branched quality inhering in a bearer by virtue of the bearer's having two or more parallel primary branches originate beside each other and converge apically. + Hickey:1988 + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's having secondary branches terminating at the margin. + quality + PATO:0001969 + + craspedodromous + + + + + A branched quality inhering in a bearer by virtue of the bearer's having secondary branches terminating at the margin. + Hickey:1988 + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's having secondary branches joined together in a series of prominent arches. + quality + PATO:0001970 + + brochidodromous + + + + + A branched quality inhering in a bearer by virtue of the bearer's having secondary branches joined together in a series of prominent arches. + Hickey:1988 + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's having secondary branches freely branching toward the margin. + quality + PATO:0001971 + + cladodromous + + + + + A branched quality inhering in a bearer by virtue of the bearer's having secondary branches freely branching toward the margin. + Hickey:1988 + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's having secondary branches branching into a reticulum toward the margin. + quality + PATO:0001972 + + reticulodromous + + + + + A branched quality inhering in a bearer by virtue of the bearer's having secondary branches branching into a reticulum toward the margin. + Hickey:1988 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being tapering gradually into a rigid point. + quality + PATO:0001973 + + cuspidate + + + + + A shape quality inhering in a bearer by virtue of the bearer's being tapering gradually into a rigid point. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating in a round end, the centre of which is depressed. + quality + PATO:0001974 + + retuse + + + + + A shape quality inhering in a bearer by virtue of the bearer's terminating in a round end, the centre of which is depressed. + ISBN:0881923214 + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex. + + quality + PATO:0001975 + + unserrated + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex. + ISBN:0881923214 + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having or lacking sharp straight-edged teeth pointing to the apex. + quality + PATO:0001976 + + serration + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's having or lacking sharp straight-edged teeth pointing to the apex. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having at least one salient angle on the margin. + angulate + quality + PATO:0001977 + + angular + + + + + A shape quality inhering in a bearer by virtue of the bearer's having at least one salient angle on the margin. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being regularly divided by deep incisions. + incised + quality + PATO:0001978 + + cut + + + + + A shape quality inhering in a bearer by virtue of the bearer's being regularly divided by deep incisions. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being partly divided into a determinate number of regions. + quality + PATO:0001979 + + + lobed + + + + + A shape quality inhering in a bearer by virtue of the bearer's being partly divided into a determinate number of regions. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having distinct parts arising from a common point or center. + quality + PATO:0001980 + + digitate + + + + + A shape quality inhering in a bearer by virtue of the bearer's having distinct parts arising from a common point or center. + thefreedictionary:thefreedictionary + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an ear. + quality + PATO:0001981 + + auriculate + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an ear. + url:http://www.thefreedictionary.com/auriculate + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's gradually tapering to a slender point. + quality + PATO:0001982 + + attenuate + + + + + A shape quality inhering in a bearer by virtue of the bearer's gradually tapering to a slender point. + url:http://www.thefreedictionary.com/attenuate + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's two basal lobes being united together. + quality + PATO:0001983 + + perfoliate + + + + + A structural quality inhering in a bearer by virtue of the bearer's two basal lobes being united together. + ISBN:0881923214 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being prolonged below the point of insertion. + quality + PATO:0001984 + + decurrent + + + + + A shape quality inhering in a bearer by virtue of the bearer's being prolonged below the point of insertion. + ISBN:0881923214 + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being kept below its freezing point. + quality + PATO:0001985 + + frozen + + + + + A quality inhering in a bearer by virtue of the bearer's being kept below its freezing point. + OBI:OBI + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's passing into solution. + quality + PATO:0001986 + + + dissolved + + + + + A quality inhering in a bearer by virtue of the bearer's passing into solution. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having a three dimensional cavity with a narrow or no opening, and often containing an anatomical substance. + sacular + quality + PATO:0001987 + + saccular + + + + + A structural quality inhering in a bearer by virtue of the bearer's having a three dimensional cavity with a narrow or no opening, and often containing an anatomical substance. + PATOC:MAH + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having four angles and four sides. + quality + PATO:0001988 + + quadrangular + + + + + A shape quality inhering in a bearer by virtue of the bearer's having four angles and four sides. + url:http://www.oed.com/ + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's having many curves and turns. + quality + twisted + PATO:0001989 + + sinuous + + + + + A curvature quality inhering in a bearer by virtue of the bearer's having many curves and turns. + PATOC:GVG + + + + + + + + + A duration quality of a process inhering in a disease by virtue of the bearer's duration of an impairment of health or of a condition of abnormal functioning. + quality + PATO:0001990 + MAH: I think this term should be obsoleted. Is it used? + duration of disease + + + + + A duration quality of a process inhering in a disease by virtue of the bearer's duration of an impairment of health or of a condition of abnormal functioning. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to being capable of indefinite growth or division. + quality + PATO:0001991 + + + immortal + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to being capable of indefinite growth or division. + answers.com:answers.com + + + + + + + + + An organismal quality inhering in a bearer by virtue of the bearer's consisting cells. + quality + PATO:0001992 + + + cellularity + + + + + An organismal quality inhering in a bearer by virtue of the bearer's consisting cells. + PATOC:GVG + + + + + + + + + + A cellularity quality inhering in a bearer by virtue of the bearer's consisting of more than one cell. + quality + PATO:0001993 + + multicellular + + + + + A cellularity quality inhering in a bearer by virtue of the bearer's consisting of more than one cell. + PATOC:GVG + + + + + + + + + A cellularity quality inhering in a bearer by virtue of the bearer's consisting of exactly one cell. + quality + PATO:0001994 + + unicellular + + + + + A cellularity quality inhering in a bearer by virtue of the bearer's consisting of exactly one cell. + PATOC:GVG + + + + + + + + + + A quality that inheres in an entire organism or part of an organism. + quality + PATO:0001995 + organismal quality + + + + + A quality that inheres in an entire organism or part of an organism. + PATOC:CJM + + + + + + + + + + true + + + + + + + + + + An amount which is relatively low. + + PATO:0000419 + PATO:0000468 + decreased number + present in fewer numbers in organism + quality + decreased + reduced + subnumerary + PATO:0001997 + + decreased amount + + + + + An amount which is relatively low. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of its visibility. + quality + PATO:0001998 + This term was created as a grouping term for the 2 terms "conspicuous" and "inconspicuous". However, it is not clear if these terms should even remain in PATO. + conspicuousness + + + + + A quality inhering in a bearer by virtue of its visibility. + PATOC:MAH + + + + + + + + + The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type. + loss of + quality + PATO:0001999 + + lacks parts or has fewer parts of type + + + + + The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type. + PATOC:CJM + + + + + + + + + + + + + + + A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity. + PATO:0001557 + OBO_REL:lacks_part + lacks all physical parts of type + quality + PATO:0002000 + + Example: [E=organism Q=lacks_all_parts_of_type E2=Wing] - applies to an organism. A relational quality in which the bearer entity has no parts of the specified type. The bearer of this quality has_part = 0 of the indicated entity type, where a comparable organism usually has at least 1 part of the same type. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e lacks all parts of type X at time t, then there exists no instances x of X at t such that x part_of e that has no wings, where wings are normally present in that organism type. In OWL this is equivalent to a restriction on the OBO_REL:has_part relation with cardinality=0, i.e has_part 0 E2. + lacks all parts of type + + + + + A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity. + PATOC:CJM + + + + + + + + + + The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. + + PATO:0001569 + decreased number of + has decreased number of + has fewer physical parts of type + quality + PATO:0002001 + + Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type. + has fewer parts of type + + + + + The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. + PATOC:CJM + + + + + + + + + + The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. + + PATO:0001560 + has extra parts of + has increased number of + having extra physical parts + having supernumerary physical parts + increased number of + quality + PATO:0002002 + + In polydactyly, the bearer of the quality is the hand, and the entity type being counted is 'finger'. In EQ syntax, E=hand, Q=<this> E2=finger. + has extra parts of type + + + + + The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. + PATOC:CJM + + + + + + + + + A quality that inheres in an entire population or part of a population. + quality + PATO:0002003 + + population quality + + + + + A quality that inheres in an entire population or part of a population. + PATOC:GVG + + + + + + + + A shape that inheres in a part of a surface. An object can have different surface shapes on different parts of its surface. + quality + PATO:0002004 + + Consider PATO:0001925 + obsolete surface shape + true + + + + + A shape that inheres in a part of a surface. An object can have different surface shapes on different parts of its surface. + PATOC:CJM + + + + + + + + + Surface shape that refers to the inward or outward curvature of the surface. + quality + PATO:0002005 + + concavity + + + + + Surface shape that refers to the inward or outward curvature of the surface. + PATOC:MAH + + + + + + + + + A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity. + quality + 2-D projection + cross-sectional + PATO:0002006 + + 2-D shape + + + + + A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity. + PATOC:CJM + + + + + + + + + + + + + + + A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave. + + Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png + quality + PATO:0002007 + + Use this term or an is_a child of this term when the entire shape of the object is known. + convex 3-D shape + + + + + A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave. + PATOC:CJM + + + + + + + + + + + + + + + A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave. + + Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png + quality + PATO:0002008 + + concave 3-D shape + + + + + A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave. + PATOC:CJM + + + + + + + + + A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity. + quality + PATO:0002009 + + + branchiness + + + + + A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity. + PATOC:MAH + + + + + + + + + A texture quality inhering in a bearer by virtue of the bearer's bing full of small openings or gaps. + quality + PATO:0002010 + + looseness + + + + + A texture quality inhering in a bearer by virtue of the bearer's bing full of small openings or gaps. + url:http://www.wordreference.com/definition/loose + + + + + + + + + A structural quality which is held by a bearer when the latter's disposition the presence of abnormally proliferating masses of cells. + tumorous + quality + PATO:0002011 + + + + neoplastic + + + + + A structural quality which is held by a bearer when the latter's disposition the presence of abnormally proliferating masses of cells. + PATOC:MAH + + + + + + + + + A texture quality that exists through a liquid cover on the surface of the bearer. + quality + PATO:0002012 + + coating + + + + + A texture quality that exists through a liquid cover on the surface of the bearer. + Wikipedia:Wikipedia + + + + + + + + + A structural quality inhering in a bearer by virtue of whether the bearer forms a bundle of anatomical fibers, as of muscle or nerve. + quality + PATO:0002013 + + fasciculation + + + + + A structural quality inhering in a bearer by virtue of whether the bearer forms a bundle of anatomical fibers, as of muscle or nerve. + answers.com:http://www.answers.com/ + + + + + + + + + A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas. + quality + PATO:0002014 + + structure, cavities + + + + + A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas. + PATOC:GVG + + + + + + + + + + true + + + + + + + + + quality + PATO:0002016 + magnitude + + + + + + + + + + high magnitude + quality + PATO:0002017 + increased magnitude + + + + + + + + + + low magnitude + quality + PATO:0002018 + decreased magnitude + + + + + + + + + A growth quality of occurrent in which the growth of an organism, structure or group of organisms does not occur. + agenesis + quality + PATO:0002019 + aplastic growth + + + + + A growth quality of occurrent in which the growth of an organism, structure or group of organisms does not occur. + PATOC:MAH + + + + + + + + + Pink color having high brightness and low saturation. + quality + PATO:0002020 + pale pink + + + + + Pink color having high brightness and low saturation. + PATOC:GVG + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a cone (a 3-D shape with a round cross section that tapers). + Image:http://upload.wikimedia.org/wikipedia/commons/d/d2/Cone_3d.png + cone-shaped + quality + PATO:0002021 + + conical + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a cone (a 3-D shape with a round cross section that tapers). + Wikipedia:http://en.wikipedia.org/wiki/Cone_(geometry) + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a minute projection (villus). + quality + PATO:0002022 + + villiform + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a minute projection (villus). + PATOC:PEM + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an apical-basal axis. + quality + PATO:0002023 + + apical-basal polarity + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an apical-basal axis. + PATOC:MAH + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the anterior-posterior axis. + rostral-caudal polarity + superior-caudal polarity (human torso) + quality + PATO:0002024 + + anterior-posterior polarity + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the anterior-posterior axis. + PATOC:MAH + + + + + + + + + A convex angle that is formed by one side of a polygon and a line extended from an adjacent side. + quality + PATO:0002025 + + + external angle + + + + + A convex angle that is formed by one side of a polygon and a line extended from an adjacent side. + http://en.wikipedia.org/wiki/Internal_angle + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time. + + george gkoutos + 2008-12-18T12:49:19Z + quality + PATO:0002026 + + + + non-progressive + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time. + PATOC:GVG + + + + + + + + + A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per kilogram of solvent. + george + 2009-01-27T10:53:11Z + quality + PATO:0002027 + + + + osmolality + + + + + A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per kilogram of solvent. + Wikipedia:http://en.wikipedia.org/wiki/Osmolarity + + + + + + + + + + An osmolality which is relatively low. + + george + 2009-01-27T10:55:33Z + low osmolality + quality + PATO:0002028 + + + decreased osmolality + + + + + An osmolality which is relatively low. + PATOC:GVG + + + + + + + + + + An osmolality which is relatively high. + + george + 2009-01-27T10:56:19Z + high osmolality + quality + PATO:0002029 + + + increased osmolality + + + + + An osmolality which is relatively high. + PATOC:GVG + + + + + + + + + A molecular quality that inheres in a molecular entity by virtue of whether the bearer exhibits the ability of a probe to react precisely with a specific target molecule. + george + 2009-01-27T11:13:52Z + quality + PATO:0002030 + + + + specificity to + + + + + A molecular quality that inheres in a molecular entity by virtue of whether the bearer exhibits the ability of a probe to react precisely with a specific target molecule. + PATOC:mc + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved or tilted such that the tip points upwards. + george + 2009-01-27T11:23:45Z + quality + PATO:0002031 + + upturned + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved or tilted such that the tip points upwards. + PATOC:cjm + + + + + + + + + A reflectivity quality inhering in light by virtue of the bearer's scattering occurring at small angle to the incident beam. + george + 2009-01-27T11:38:49Z + quality + PATO:0002032 + + forward scatter + + + + + A reflectivity quality inhering in light by virtue of the bearer's scattering occurring at small angle to the incident beam. + PATOC:mc + + + + + + + + + A reflective quality that is the light scattering occurring at wide angle (around 90 degrees) to the incident beam. + george + 2009-01-27T11:39:36Z + quality + PATO:0002033 + + side scatter + + + + + A reflective quality that is the light scattering occurring at wide angle (around 90 degrees) to the incident beam. + PATOC:mc + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being unseparated into parts or divisions. + george + 2009-01-27T11:53:46Z + quality + unseparated + PATO:0002034 + + undivided + + + + + A shape quality inhering in a bearer by virtue of the bearer's being unseparated into parts or divisions. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being on the same side in relation to another structure. + george + 2009-02-01T02:04:11Z + ipsilateral + quality + PATO:0002035 + + + + ipsilateral to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being on the same side in relation to another structure. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located towards the central axis of the organism or an extremity. + george + 2009-02-01T02:06:20Z + quality + PATO:0002036 + + + + axial to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located towards the central axis of the organism or an extremity. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer exhibiting deterioration of its structure. + george + 2009-02-03T11:13:19Z + quality + PATO:0002037 + + + degeneration + + + + + A structural quality inhering in a bearer by virtue of the bearer exhibiting deterioration of its structure. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer whose structure which does not deteriorate. + + george + 2009-02-03T11:14:54Z + not degenerate + quality + PATO:0002038 + + non-degenerate + + + + + A structural quality inhering in a bearer whose structure which does not deteriorate. + PATOC:GVG + + + + + + + + + A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces. + + quality + PATO:0002039 + + biconcave + + + + + A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface. + + Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx + quality + PATO:0002040 + + biconvex + + + + + A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface. + thefreedictionary:http://www.thefreedictionary.com/biconvexity + + + + + + + + + A diameter that is along the anterior-posterior axis. + quality + PATO:0002041 + + + anterior-posterior diameter + + + + + A diameter that is along the anterior-posterior axis. + PATOC:GVG + + + + + + + + + + An anterior-posterior diameter quality which is relatively small. + + low anterior-posterior diameter + quality + PATO:0002042 + + decreased anterior-posterior diameter + + + + + An anterior-posterior diameter quality which is relatively small. + PATOC:GVG + + + + + + + + + + An anterior-posterior diameter quality which is relatively large. + + high anterior-posterior diameter + quality + PATO:0002043 + + increased anterior-posterior diameter + + + + + An anterior-posterior diameter quality which is relatively large. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being a quadrilateral with two parallel sides. + trapezoidal + quality + PATO:0002044 + + trapezoid + + + + + A shape quality inhering in a bearer by virtue of the bearer's being a quadrilateral with two parallel sides. + PATOC:GVG + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's having smaller branches arising from larger branches. Resembling a tree in branching structure. + george + 2009-02-15T08:11:41Z + dendriform + dendroid + dendroidal + quality + PATO:0002045 + + dendritic + + + + + A branched quality inhering in a bearer by virtue of the bearer's having smaller branches arising from larger branches. Resembling a tree in branching structure. + PATOC:cvs + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being away from or on the opposite side of the central axis. + george gkoutos + 2009-03-03T04:16:11Z + quality + PATO:0002046 + + + + abaxial to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being away from or on the opposite side of the central axis. + medical-dictionary:http://medical-dictionary.thefreedictionary.com/abaxial + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located on the side nearest to the axis of an organ or organism. + george gkoutos + 2009-03-03T04:22:28Z + quality + PATO:0002047 + + + + adaxial to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located on the side nearest to the axis of an organ or organism. + thefreedictionary:http://www.thefreedictionary.com/adaxial + + + + + + + + + An organismal quality inhering in a bearer by virtue of the bearer's having two or more cell populations that differ in genetic makeup. This situation can affect any type of cell, including blood cells, gametes (egg and sperm cells), and skin. + george gkoutos + 2009-03-03T04:30:52Z + quality + heterogeneity + PATO:0002048 + + mosaicism + + + + + An organismal quality inhering in a bearer by virtue of the bearer's having two or more cell populations that differ in genetic makeup. This situation can affect any type of cell, including blood cells, gametes (egg and sperm cells), and skin. + Medline:http://www.nlm.nih.gov/medlineplus + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis and towards the side. + George Gkoutos + 2009-03-13T12:36:14Z + quality + PATO:0002049 + + lateral and rotional curvature + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis and towards the side. + PATOC:GVG + + + + + + + + + + + + + + + An amount which normal. + george + 2009-03-20T11:16:22Z + present in normal numbers in organism + quality + PATO:0002050 + normal amount + + + + + An amount which normal. + PATOC:GVG + + + + + + + + + + An occurrence which is relatively high. + + George Gkoutos + 2009-03-26T11:10:11Z + increased incidence + quality + PATO:0002051 + increased occurrence + + + + + An occurrence which is relatively high. + PATOC:GVG + + + + + + + + + + An occurrence which is relatively low. + + George Gkoutos + 2009-03-26T11:12:35Z + decreased incidence + quality + PATO:0002052 + decreased occurrence + + + + + An occurrence which is relatively low. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being flattened along dorso-ventral axis. + George Gkoutos + 2009-03-26T03:02:38Z + quality + PATO:0002053 + + dorso-ventrally flattened + + + + + A quality inhering in a bearer by virtue of the bearer's being flattened along dorso-ventral axis. + PATOC:MSP + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being flattened along transverse axis. + George Gkoutos + 2009-03-26T03:03:37Z + laterally flattened + quality + transversely flattened + PATO:0002054 + + laterally compressed + + + + + A quality inhering in a bearer by virtue of the bearer's being flattened along transverse axis. + PATOC:msp + + + + + + + + + + A fragility which is relatively high. + + George Gkoutos + 2009-03-26T04:01:37Z + quality + PATO:0002055 + + + increased fragility + + + + + A fragility which is relatively high. + PATOC:GVG + + + + + + + + + + A fragility which is relatively low. + + George Gkoutos + 2009-03-26T04:02:14Z + quality + PATO:0002056 + + + decreased fragility + + + + + A fragility which is relatively low. + PATOC:GVG + + + + + + + + + + An area which is relatively high. + + George Gkoutos + 2009-03-30T04:11:43Z + quality + PATO:0002057 + + increased area + + + + + An area which is relatively high. + PATOC:GVG + + + + + + + + + + An area which is relatively low. + + George Gkoutos + 2009-03-30T04:12:11Z + quality + PATO:0002058 + + decreased area + + + + + An area which is relatively low. + PATOC:GVG + + + + + + + + + The specific wavelength of light emitted by a fluorescent molecule, such as a labelled probe, upon absorption of light at the (higher) excitation wavelength. + George Gkoutos + 2009-05-27T02:25:33Z + quality + PATO:0002059 + + emmision wavelength + + + + + The specific wavelength of light emitted by a fluorescent molecule, such as a labelled probe, upon absorption of light at the (higher) excitation wavelength. + web:http://www.expertglossary.com/ + + + + + + + + + The specific wavelength of radiation that can be retained by a bearer. + George Gkoutos + 2009-05-27T02:33:32Z + quality + PATO:0002060 + + absorption wavelength + + + + + The specific wavelength of radiation that can be retained by a bearer. + PATOC:GVG + + + + + + + + + + true + + + + + + + + + george + 2009-06-05T09:16:46Z + quality + PATO:0002062 + + physical quality of a process + + + + + + + + + A shape inhering in a bearer by virtue of the bearer's being elongated and cylindrical. + George Gkoutos + 2009-07-01T01:44:06Z + quality + PATO:0002063 + + + + columnar + + + + + A shape inhering in a bearer by virtue of the bearer's being elongated and cylindrical. + PATOC:me + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's delimited by a surface with holes. + George Gkoutos + 2009-07-01T01:46:53Z + quality + PATO:0002064 + + + + fenestrated + + + + + A structure quality inhering in a bearer by virtue of the bearer's delimited by a surface with holes. + PATOC:me + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being arranged like rays or radii; radiating from a common center. + George Gkoutos + 2009-07-01T01:48:19Z + stellate + quality + PATO:0002065 + + + + star shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's being arranged like rays or radii; radiating from a common center. + PATOC:me + + + + + + + + + A solid configuration inhering in a material entity by virtue of its constituent atoms, molecules, or ions being arranged in an orderly repeating pattern extending in all three spatial dimensions. + George Gkoutos + 2009-07-01T01:50:40Z + quality + PATO:0002066 + + crystal configuration + + + + + A solid configuration inhering in a material entity by virtue of its constituent atoms, molecules, or ions being arranged in an orderly repeating pattern extending in all three spatial dimensions. + Wikipedia:http://en.wikipedia.org/wiki/Crystal + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's layered configuration. + George Gkoutos + 2009-07-01T02:30:45Z + quality + PATO:0002067 + + stratification + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's layered configuration. + PATOC:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration. + + George Gkoutos + 2009-07-01T02:31:53Z + quality + PATO:0002068 + + + stratified + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration. + PATOC:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration. + + George Gkoutos + 2009-07-01T02:33:41Z + quality + PATO:0002069 + + + unstratified + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration. + PATOC:GVG + + + + + + + + + A molecular quality that arises from the molecular attraction exerted between two atoms or compounds. + George Gkoutos + 2009-09-18T01:16:16Z + quality + PATO:0002070 + + + + + affinity + + + + + A molecular quality that arises from the molecular attraction exerted between two atoms or compounds. + PATOC:GVG + + + + + + + + + + An affinity which is relatively high. + + George Gkoutos + 2009-09-18T01:29:42Z + quality + PATO:0002071 + + + + increased affinity + + + + + An affinity which is relatively high. + PATOC:GVG + + + + + + + + + + An affinity which is relatively low. + + George Gkoutos + 2009-09-18T01:30:11Z + quality + PATO:0002072 + + + + decreased affinity + + + + + An affinity which is relatively low. + PATOC:GVG + + + + + + + + + A molecular quality that arises from the synergistic strength of bond affinities between multiple bond interactions. + George Gkoutos + 2009-09-18T01:41:44Z + quality + PATO:0002073 + + + + + avidity + + + + + A molecular quality that arises from the synergistic strength of bond affinities between multiple bond interactions. + Wikipedia:Wikipedia + + + + + + + + + + An avidity which is relatively high. + + George Gkoutos + 2009-09-18T01:45:56Z + quality + PATO:0002074 + + + + increased avidity + + + + + An avidity which is relatively high. + PATOC:GVG + + + + + + + + + + An avidity which is relatively low. + + George Gkoutos + 2009-09-18T01:45:59Z + quality + PATO:0002075 + + + + decreased avidity + + + + + An avidity which is relatively low. + PATOC:GVG + + + + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's movement. + George Gkoutos + 2009-09-18T02:04:48Z + movement behavioural quality + quality + PATO:0002076 + + movement behavioral quality + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's movement. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being positioned with multiple entities of the same type above and below. + George Gkoutos + 2009-09-18T02:11:35Z + quality + PATO:0002077 + + stacked + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being positioned with multiple entities of the same type above and below. + PATOC:CJM + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having an empty space or cavity within. + George Gkoutos + 2009-09-18T02:19:20Z + quality + PATO:0002078 + + hollow + + + + + A quality inhering in a bearer by virtue of the bearer's having an empty space or cavity within. + url:http://www.merriam-webster.com/dictionary/hollow + + + + + + + + + + true + + + + + + + + + A broken quality inhering in a bearer by virtue of the bearer's being seperated into two contiguous wholes. + George Gkoutos + 2009-09-21T10:18:11Z + quality + PATO:0002080 + + broken into two pieces + + + + + A broken quality inhering in a bearer by virtue of the bearer's being seperated into two contiguous wholes. + PATOC:CJM + + + + + + + + + A broken quality inhering in a bearer by virtue of the bearer's being broken into multiple contiguous wholes. + George Gkoutos + 2009-09-21T10:18:51Z + quality + PATO:0002081 + + shattered + + + + + A broken quality inhering in a bearer by virtue of the bearer's being broken into multiple contiguous wholes. + PATOC:GJM + + + + + + + + + A broken quality inhering in a bearer by virtue of the bearer's being still one contiguous whole but structurally damaged such that in danger of become two or more. + George Gkoutos + 2009-09-21T10:20:06Z + quality + PATO:0002082 + + partially broken + + + + + A broken quality inhering in a bearer by virtue of the bearer's being still one contiguous whole but structurally damaged such that in danger of become two or more. + PATOC:CJM + + + + + + + + + Having extra or fewer parts. + George Gkoutos + 2009-09-21T10:41:58Z + quality + PATO:0002083 + + + altered number of + + + + + Having extra or fewer parts. + PATOC:GVG + + + + + + + + The period after death of the organism. + George Gkoutos + 2009-09-25T11:29:21Z + quality + PATO:0002084 + + Terms were requested by the OBI consortium but it was later decided that the term was not reflecting a quality rather what it might be refered to as a "conferred quality". + obsolete post-mortem + true + + + + + The period after death of the organism. + thefreedictionary:thefreedictionary + + + + + + + + The period before death of the organism. + George Gkoutos + 2009-09-25T11:31:13Z + quality + PATO:0002085 + + Terms were requested by the OBI consortium but it was later decided that the term was not reflecting a quality rather what it might be refered to as a "conferred quality". + obsolete pre-mortem + true + + + + + The period before death of the organism. + merriam-webster:merriam-webster + + + + + + + + + + true + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being short and wide and tapered distally. + George Gkoutos + 2009-09-30T09:53:43Z + quality + PATO:0002087 + + bullet-shaped + + + + + A quality inhering in a bearer by virtue of the bearer's being short and wide and tapered distally. + PATOC:GVG + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's body consisting of one sac. + George Gkoutos + 2009-10-01T03:00:20Z + quality + PATO:0002088 + + + monocystic + + + + + A structure quality inhering in a bearer by virtue of the bearer's body consisting of one sac. + mondofacto:mondofacto + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's body containing more than one cyst - formations of an epithelium bounded cavity not associated with neoplasia. + George Gkoutos + 2009-10-01T03:02:54Z + multicystic + quality + PATO:0002089 + + polycystic + + + + + A structure quality inhering in a bearer by virtue of the bearer's body containing more than one cyst - formations of an epithelium bounded cavity not associated with neoplasia. + PATOC:GVG + + + + + + + + + A morphology quality inhering in a tumour by virtue of the bearer's exhbiting the morphological characteristics of a glandular epithelial cell. + george + 2009-10-05T11:25:52Z + quality + PATO:0002090 + + + adenomatous + + + + + A morphology quality inhering in a tumour by virtue of the bearer's exhbiting the morphological characteristics of a glandular epithelial cell. + PATOC:GVG + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's having an onset and time course between acute and chronic. + george + 2009-10-05T11:31:35Z + quality + PATO:0002091 + + + + subacute + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's having an onset and time course between acute and chronic. + PATOC:GVG + + + + + + + + + A morphology quality inhering in a neoplastic cell by virtue of the bearer's exhibiting breakdown of cell-cell interaction maintaining tissue architecture, proliferative dysregulation and bizarre modification to nucleus size and shape. + george + 2009-10-05T11:45:53Z + quality + PATO:0002092 + + + anaplastic + + + + + A morphology quality inhering in a neoplastic cell by virtue of the bearer's exhibiting breakdown of cell-cell interaction maintaining tissue architecture, proliferative dysregulation and bizarre modification to nucleus size and shape. + PATOC:GVG + + + + + + + + + A volume quality inhering in a degenerating cell by virtue of the bearer's exhibiting an increase in volume associated with cytoplasmic abnormalities. + george + 2009-10-05T12:01:13Z + quality + PATO:0002093 + + + ballooning + + + + + A volume quality inhering in a degenerating cell by virtue of the bearer's exhibiting an increase in volume associated with cytoplasmic abnormalities. + PATOC:GVG + + + + + + + + + An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for basic dyes under specific ph conditions. + george + 2009-10-05T12:05:23Z + quality + PATO:0002094 + + + + basophilic + + + + + An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for basic dyes under specific ph conditions. + PATOC:GVG + + + + + + + + A disposition inhering in a tumour to progress or fail to progress during it's life time. + george + 2009-10-05T12:15:02Z + quality + PATO:0002095 + + obsolete neoplasm disposition + true + + + + + A disposition inhering in a tumour to progress or fail to progress during it's life time. + PATOC:GVG + + + + + + + + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition not to progress, invade surrounding tissues or metastasize. + george + 2009-10-05T12:47:14Z + quality + benign + PATO:0002096 + + + + neoplastic, non-malignant + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition not to progress, invade surrounding tissues or metastasize. + PATOC:GVG + + + + + + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to progress, invade surrounding tissues or metastasize. + george + 2009-10-05T12:50:22Z + quality + PATO:0002097 + + + + neoplastic, malignant + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to progress, invade surrounding tissues or metastasize. + PATOC:GVG + + + + + + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to spread and invade distant tissues. + george + 2009-10-05T12:54:48Z + quality + PATO:0002098 + + + + neoplastic, metastatic + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to spread and invade distant tissues. + PATOC:GVG + + + + + + + + + A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type. + + george + 2009-10-05T12:58:54Z + quality + PATO:0002099 + + + differentiated + + + + + A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type. + PATOC:GVG + + + + + + + + + A cellular quality inhering in a bearer by virtue of having not yet acquired a special structure of function. + + george + 2009-10-05T12:59:21Z + quality + PATO:0002100 + + + undifferentiated + + + + + A cellular quality inhering in a bearer by virtue of having not yet acquired a special structure of function. + PATOC:GVG + + + + + + + + + A cellular quality inhering in a bearer by virtue of having changed from one fully differentiated state into another. + george + 2009-10-05T01:09:09Z + quality + trans-differentiated + PATO:0002101 + + + metaplastic + + + + + A cellular quality inhering in a bearer by virtue of having changed from one fully differentiated state into another. + PATOC:GVG + + + + + + + + + A cellular quality inhering in a cell that arises by virtue of whether the bearer exhibits the ability to grow and proliferate in number through cell division. + george + 2009-10-05T01:16:31Z + quality + PATO:0002102 + + + + proliferative + + + + + A cellular quality inhering in a cell that arises by virtue of whether the bearer exhibits the ability to grow and proliferate in number through cell division. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's penetrating or permeating another substance or area. + george + 2009-10-05T01:27:56Z + infiltrating + quality + PATO:0002103 + + + infiltrative + + + + + A structural quality inhering in a bearer by virtue of the bearer's penetrating or permeating another substance or area. + PATOC:GVG + + + + + + + + + A compositional quality inhering in an bearer by virtue of the bearer's infiltration by leukocytes, local edema and accumulation of plasma proteins. + george + 2009-10-05T01:37:35Z + quality + PATO:0002104 + + + inflamed + + + + + A compositional quality inhering in an bearer by virtue of the bearer's infiltration by leukocytes, local edema and accumulation of plasma proteins. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's exhibiting excessive discharge of blood from the blood vessels. + george + 2009-10-05T01:55:53Z + quality + PATO:0002105 + + + hemorrhagic + + + + + A structural quality inhering in a bearer by virtue of the bearer's exhibiting excessive discharge of blood from the blood vessels. + PATOC:GVG + + + + + + + + + A cellular quality inhering in a bearer by virtue of its lacking most of the cellular characteristics which would allow it to be fully differentiated. + george + 2009-10-05T02:53:43Z + quality + PATO:0002106 + + + poorly differentiated + + + + + A cellular quality inhering in a bearer by virtue of its lacking most of the cellular characteristics which would allow it to be fully differentiated. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being at the edge or boundary of a related entity. + george + 2009-10-05T02:58:16Z + quality + PATO:0002107 + + + + peripheral + + + + + A positional quality inhering in a bearer by virtue of the bearer's being at the edge or boundary of a related entity. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's resembling small nipple like projection. + george + 2009-10-05T03:04:52Z + quality + PATO:0002108 + + + papillary + + + + + A quality inhering in a bearer by virtue of the bearer's resembling small nipple like projection. + PATO:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's resembling cheese. + george + 2009-10-05T03:09:27Z + cheese-like + quality + PATO:0002109 + + + caseous + + + + + A structural quality inhering in a bearer by virtue of the bearer's resembling cheese. + answers.com:answers.com + + + + + + + + + A cellular quality inhering in a bearer by virtue of its having most of the cellular characteristics of the tissue of origin. + george + 2009-10-05T03:26:29Z + quality + PATO:0002110 + + + well differentiated + + + + + A cellular quality inhering in a bearer by virtue of its having most of the cellular characteristics of the tissue of origin. + PATOC:GVG + + + + + + + + + A cellular quality inhering in a bearer by virtue of its lacking few of the cellular characteristics which would allow it to be fully differentiated. + george + 2009-10-05T03:29:42Z + quality + PATO:0002111 + + + moderately well differentiated + + + + + A cellular quality inhering in a bearer by virtue of its lacking few of the cellular characteristics which would allow it to be fully differentiated. + PATOC:GVG + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes. + + george + 2009-10-05T03:37:05Z + PATO:0000649 + quality + permeable + pierced + PATO:0002112 + + + perforate + + + + + A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes. + answers.com:answers.com + + + + + + + + + Perforated like a sieve. + george + 2009-10-05T03:38:22Z + quality + PATO:0002113 + + + cribriform + + + + + Perforated like a sieve. + merriam-webster:merriam-webster + + + + + + + + + A composition quality inhering in a bearer by virtue of the bearer's containing excess lipid. + george + 2009-10-05T03:47:15Z + quality + PATO:0002114 + + + fatty + + + + + A composition quality inhering in a bearer by virtue of the bearer's containing excess lipid. + PATOC:GVG + + + + + + + + + A composition quality inhering in a bearer by virtue of the bearer's containing fibrin. + george + 2009-10-05T04:01:01Z + quality + PATO:0002115 + + fibrinoid + + + + + A composition quality inhering in a bearer by virtue of the bearer's containing fibrin. + PATOC:GVG + + + + + + + + + A composition quality inhering in exudate by virtue of the bearer's containing fibrin. + george + 2009-10-05T04:03:03Z + quality + PATO:0002116 + + + fibrinopurulent + + + + + A composition quality inhering in exudate by virtue of the bearer's containing fibrin. + PATOC:GVG + + + + + + + + + A morphology quality inhering in a bearer by virtue of the bearer's exhbiting the morphological characteristics of a gland. + george + 2009-10-05T04:11:30Z + quality + PATO:0002117 + + + glandular + + + + + A morphology quality inhering in a bearer by virtue of the bearer's exhbiting the morphological characteristics of a gland. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being present in more than two copies. + george + 2009-10-06T03:28:38Z + quality + PATO:0002118 + + + multiple + + + + + A quality inhering in a bearer by virtue of the bearer's being present in more than two copies. + PATOC:GVG + + + + + + + + + A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of intracellular fluid. + george + 2009-10-06T03:45:58Z + quality + PATO:0002119 + + + hydropic + + + + + A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of intracellular fluid. + PATOC:GVG + + + + + + + + + A quality inhering a bearer by virtue of the bearer's ability to generate pus. + george + 2009-10-06T03:56:00Z + quality + purulent + PATO:0002120 + + + suppurative + + + + + A quality inhering a bearer by virtue of the bearer's ability to generate pus. + PATOC:GVG + + + + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's structureresembling an irregular meshwork with cross-linking struts. + george + 2009-10-06T03:57:55Z + quality + PATO:0002121 + + + trabecular + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's structureresembling an irregular meshwork with cross-linking struts. + PATOC:GVG + + + + + + + + + A composition quality inhering in a bearer by virtue of the bearer's being composed of more than one identifiable entities. + george + 2009-10-06T04:29:17Z + quality + PATO:0002122 + + + mixed + + + + + A composition quality inhering in a bearer by virtue of the bearer's being composed of more than one identifiable entities. + PATOC:GVG + + + + + + + + + Being smallest in amount, extent or degree. + george + 2009-10-06T04:33:48Z + quality + PATO:0002123 + + + minimal + + + + + Being smallest in amount, extent or degree. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer. + george + 2009-10-06T04:37:14Z + quality + PATO:0002124 + + + laminar + + + + + A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's consisting a knot-like mass. + george + 2009-10-06T04:40:06Z + quality + PATO:0002125 + + + nodular + + + + + A quality inhering in a bearer by virtue of the bearer's consisting a knot-like mass. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's containing bone. + george + 2009-10-06T04:42:11Z + bony + quality + PATO:0002126 + + + osseous + + + + + A quality inhering in a bearer by virtue of the bearer's containing bone. + PATOC:GVG + + + + + + + + + A hardness quality of being rigid and resistant to pressure and fibrous. + george + 2009-10-06T04:49:30Z + quality + PATO:0002127 + + + + scirrhous + + + + + A hardness quality of being rigid and resistant to pressure and fibrous. + PATOC:GVG + + + + + + + + + A quality inhering a bearer by virtue of the bearer's containing or resembling serum. + george + 2009-10-06T04:51:16Z + quality + PATO:0002128 + + serous + + + + + A quality inhering a bearer by virtue of the bearer's containing or resembling serum. + PATOC:GVG + + + + + + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues. + george + 2009-10-06T05:02:45Z + quality + PATO:0002129 + + + + neoplastic, invasive + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues. + PATOC:GVG + + + + + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues to a large extend. + george + 2009-10-06T05:03:13Z + quality + PATO:0002130 + + + neoplastic, deeply invasive + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues to a large extend. + PATOC:GVG + + + + + + + + + A displaced angular placement quality inhering in a body part by virtue of the bearer's movement away from the medial plane of the body. + george + 2009-10-13T06:38:53Z + quality + PATO:0002131 + + + abduction + + + + + A displaced angular placement quality inhering in a body part by virtue of the bearer's movement away from the medial plane of the body. + wikipedia:wikipedia + + + + + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition not to invade surrounding tissues. + george + 2009-10-06T05:04:18Z + quality + PATO:0002132 + + + + neoplastic, non-invasive + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition not to invade surrounding tissues. + PATOC:GVG + + + + + + + + + A displaced angular placement quality inhering in a body part by virtue of the bearer's movement closer the medial plane of the body. + george + 2009-10-13T06:41:39Z + quality + PATO:0002133 + + + This term is also used in reference to the operation of the muscle in anatomy or musculature. + adduction + + + + + A displaced angular placement quality inhering in a body part by virtue of the bearer's movement closer the medial plane of the body. + wikipedia:wikipedia + + + + + + + + + A composition quaity inhering in a bearer by virtue of the bearer's containing of or pertaining to fibrils, or nanoscale fibers. + george + 2009-10-26T12:53:47Z + fibrillate + quality + PATO:0002134 + + fibrillary + + + + + A composition quaity inhering in a bearer by virtue of the bearer's containing of or pertaining to fibrils, or nanoscale fibers. + wikipedia:wikipedia + + + + + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's delay to complete the closure of the opening of an anatomical entity. + george + 2009-10-26T01:03:17Z + quality + PATO:0002135 + delayed closure + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's delay to complete the closure of the opening of an anatomical entity. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's relative inability of electromagnetism to pass through a particular material, particularly X-rays. + george + 2009-10-26T01:14:38Z + quality + PATO:0002136 + + + + radiopacity + + + + + A quality inhering in a bearer by virtue of the bearer's relative inability of electromagnetism to pass through a particular material, particularly X-rays. + Wikipedia:Wikipedia + + + + + + + + + A readiopacity quality inhering in a bearer by virtue of the bearer's prevention of the passage of electromagnetic radiation. + george + 2009-10-26T01:16:08Z + quality + PATO:0002137 + + + radiopaque + + + + + A readiopacity quality inhering in a bearer by virtue of the bearer's prevention of the passage of electromagnetic radiation. + Wikipedia:Wikipedia + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be eaten. + george + 2009-10-26T01:20:24Z + edibleness + quality + PATO:0002138 + + + + edibility + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be eaten. + PATOC:VO + + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer being suitable for use as food. + + george + 2009-10-26T01:21:34Z + quality + PATO:0002139 + + + + edible + + + + + A physical quality inhering in a bearer by virtue of the bearer being suitable for use as food. + PATOC:VO + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food. + + george + 2009-10-26T01:22:27Z + quality + PATO:0002140 + + + + inedible + + + + + A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food. + PATOC:VO + + + + + + + + + A density quality which lacks pattern. + george + 2009-10-28T01:57:53Z + quality + PATO:0002141 + + irregular density + + + + + A density quality which lacks pattern. + PATOC:GVG + + + + + + + + + george + 2009-10-28T03:14:54Z + quality + PATO:0002142 + + bracket + + + + + + + + + george + 2009-10-30T02:18:39Z + quality + PATO:0002143 + + sloped downward + + + + + + + + + + A radiopacity that is relatively high. + + george + 2009-10-30T03:30:39Z + quality + PATO:0002144 + + + increased radiopacity + + + + + A radiopacity that is relatively high. + PATOC:GVG + + + + + + + + + + A radiopacity that is relatively low. + + george + 2009-10-30T03:31:31Z + quality + PATO:0002145 + + + decreased radiopacity + + + + + A radiopacity that is relatively low. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the severity of infectious disease caused by the bearer in a target organism. + george + 2009-10-30T05:04:06Z + quality + PATO:0002146 + + + virulence + + + + + A quality inhering in a bearer by virtue of the severity of infectious disease caused by the bearer in a target organism. + https://orcid.org/0000-0001-5208-3432 + https://orcid.org/0000-0001-8941-3984 + + + + + + + + + + A virulence that is relatively low. + + george + 2009-10-30T05:05:02Z + attenuated + quality + PATO:0002147 + + reduced virulence + + + + + A virulence that is relatively low. + PATOC:GVG + + + + + + + + + + A virulence that is relatively high. + + george + 2009-10-30T05:13:10Z + quality + PATO:0002148 + + increased virulence + + + + + A virulence that is relatively high. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer exhibiting increased density resulting in exhibiting increased degree of radiopacity (in X-rays). + george + 2009-11-03T02:59:08Z + quality + PATO:0002149 + + ivory + + + + + A quality inhering in a bearer by virtue of the bearer exhibiting increased density resulting in exhibiting increased degree of radiopacity (in X-rays). + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the part of the body from which the tail arises. + george + 2009-11-06T01:13:10Z + splayed inferior (human torso) + splayed posterior + quality + PATO:0002150 + + splayed caudal + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the part of the body from which the tail arises. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the back or upper surface of an organism. + george + 2009-11-06T01:14:09Z + quality + splayed posterior (human torso) + PATO:0002151 + + splayed dorsal + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the back or upper surface of an organism. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the side. + george + 2009-11-06T01:14:22Z + quality + PATO:0002152 + + splayed lateral + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the side. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the front of an organism. + george + 2009-11-06T01:14:31Z + splayed anterior + splayed superior (human torso) + quality + PATO:0002153 + + splayed rostral + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the front of an organism. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the abdomen of an organism. + george + 2009-11-06T01:14:42Z + splayed anterior (human torso) + splayed inferior (human head) + quality + PATO:0002154 + + splayed ventral + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the abdomen of an organism. + PATOC:GVG + + + + + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the middle of an organism. + george + 2009-11-06T02:23:28Z + internally rotated + quality + PATO:0002155 + + + medially rotated + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the middle of an organism. + PATOC:GVG + + + + + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the side of an organism. + george + 2009-11-06T02:25:10Z + externally rotated + quality + PATO:0002156 + + + laterally rotated + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the side of an organism. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being slightly out of its usual or proper place, or position. + george + 2009-11-06T03:34:15Z + PATO:0002160 + partial dislocated towards + subluxation + suluxated towards + quality + PATO:0002157 + + + partially dislocated + + + + + A positional quality inhering in a bearer by virtue of the bearer's being slightly out of its usual or proper place, or position. + PATOC:GVG + + + + + + + + + + true + + + + + + + + + + true + + + + + + + + + + true + + + + + + + + + Having two horns or horn-shaped branches. + george + 2009-11-11T02:37:52Z + quality + PATO:0002161 + + bicornuate + + + + + Having two horns or horn-shaped branches. + mondofacto:mondofacto + + + + + + + + + + A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch of an increased apical height. + george + 2009-11-26T02:34:06Z + quality + PATO:0002162 + + high-arched + + + + + A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch of an increased apical height. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it into the surface or boundary of another entity. + george + 2009-11-26T04:50:43Z + quality + PATO:0002163 + + + + herniated into + + + + + A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it into the surface or boundary of another entity. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the middle. + george + 2009-12-02T10:06:21Z + quality + PATO:0002164 + + curved medial + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the middle. + PATOC:GVG + + + + + + + + + To bent or hang downwards. + george + 2009-12-02T03:32:55Z + sagging + quality + PATO:0002165 + + drooping + + + + + To bent or hang downwards. + thefreedictionary.:thefreedictionary. + + + + + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's premature completion of the closure of the opening of an anatomical entity. + george + 2009-12-02T04:10:10Z + quality + PATO:0002166 + + premature closure + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's premature completion of the closure of the opening of an anatomical entity. + PATOC:GVG + + + + + + + + + A protruding quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded out of the surface or boundary of another entity. + george + 2009-12-02T05:19:32Z + quality + PATO:0002167 + + + + herniated out of + + + + + A protruding quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded out of the surface or boundary of another entity. + PATOC:GVG + + + + + + + + + An angular placement quality inhering in a bearer by virtue of the bearer being changed in position in relation to another entity. + george + 2010-01-14T04:45:18Z + quality + mislocalised to + PATO:0002168 + + displaced to + + + + + An angular placement quality inhering in a bearer by virtue of the bearer being changed in position in relation to another entity. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being split along the median axis. + george + 2010-02-03T04:37:15Z + quality + PATO:0002169 + + split medially + + + + + A shape quality inhering in a bearer by virtue of the bearer's being split along the median axis. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being split asymmetrically on one side. + george + 2010-02-03T04:37:40Z + quality + PATO:0002170 + + split laterally + + + + + A shape quality inhering in a bearer by virtue of the bearer's being split asymmetrically on one side. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being split on two side. + george + 2010-02-03T04:37:53Z + quality + PATO:0002171 + + split bilaterally + + + + + A shape quality inhering in a bearer by virtue of the bearer's being split on two side. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being split along the radial axis. + george + 2010-02-03T04:42:35Z + quality + PATO:0002172 + + split radially + + + + + A shape quality inhering in a bearer by virtue of the bearer's being split along the radial axis. + PATOC:GVG + + + + + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning towards an additional entity. + George Gkoutos + 2010-02-22T03:18:17Z + quality + PATO:0002173 + + + misaligned towards + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning towards an additional entity. + PATOC:GVG + + + + + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning away from an additional entity. + George Gkoutos + 2010-02-22T03:18:48Z + quality + PATO:0002174 + + + misaligned away from + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning away from an additional entity. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's changed direction of position towards another entity. + George Gkoutos + 2010-02-25T09:14:42Z + quality + PATO:0002175 + + deviation + + + + + A spatial quality inhering in a bearer by virtue of the bearer's changed direction of position towards another entity. + PATO:GVG + + + + + + + + + A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the side. + George Gkoutos + 2010-02-25T09:16:04Z + quality + PATO:0002176 + + deviation towards the lateral side + + + + + A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the side. + PATOC:GVG + + + + + + + + + A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the middle. + George Gkoutos + 2010-02-25T09:16:56Z + quality + PATO:0002177 + + deviation towards the medial side + + + + + A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the middle. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position around a central point or axis. + George Gkoutos + 2010-02-25T11:24:58Z + quality + PATO:0002178 + + mislocalised radially + + + + + A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position around a central point or axis. + PATOC:GVG + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards to point of attachment or origin. + George Gkoutos + 2010-02-25T12:34:48Z + quality + PATO:0002179 + + mislocalised proximally + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards to point of attachment or origin. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being free of curves, bends, or angles. + George Gkoutos + 2010-02-28T08:54:59Z + quality + PATO:0002180 + + straight + + + + + A shape quality inhering in a bearer by virtue of the bearer's being free of curves, bends, or angles. + merriam-webster:merriam-webster + + + + + + + + + A positional quality inhering in a bearer by virtue the bearer's being changed in position. + George Gkoutos + 2010-03-01T02:56:33Z + quality + PATO:0002181 + + displaced + + + + + A positional quality inhering in a bearer by virtue the bearer's being changed in position. + PATOC:GVG + + + + + + + + + A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc. + George Gkoutos + 2010-03-10T03:18:15Z + PATO:0002061 + relational molecular quality + quality + PATO:0002182 + molecular quality + + + + + A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc. + PATOC:GVG + + + + + + + + + A molecular quality that inheres in a molecular entity by virtue of whether that there is a presence of cycles in the connection of the atoms within the molecular entity. + George Gkoutos + 2010-03-10T03:19:46Z + quality + PATO:0002183 + + cyclicity + + + + + A molecular quality that inheres in a molecular entity by virtue of whether that there is a presence of cycles in the connection of the atoms within the molecular entity. + PATOC:JH + + + + + + + + + Cyclic cyclicity inheres in a molecule when the atoms of the molecule do contain at least one cycle in the atom-atom connection paths (through bonds). + George Gkoutos + 2010-03-10T03:20:54Z + quality + PATO:0002184 + + cyclic cyclicity + + + + + Cyclic cyclicity inheres in a molecule when the atoms of the molecule do contain at least one cycle in the atom-atom connection paths (through bonds). + PATOC:JH + + + + + + + + + Acyclic cyclicity inheres in a molecule when the atoms within the molecule do not contain at least one cycle in the atom-atom connection paths (through the bonds). + George Gkoutos + 2010-03-10T03:21:39Z + quality + PATO:0002185 + + acyclic cyclicity + + + + + Acyclic cyclicity inheres in a molecule when the atoms within the molecule do not contain at least one cycle in the atom-atom connection paths (through the bonds). + PATOC:JH + + + + + + + + + A molecular quality that inheres in a molecular entity by virtue of whether or not the molecular entity has a separation of electric charge which leads to the molecule having an electric dipole. + George Gkoutos + 2010-03-10T03:22:04Z + quality + PATO:0002186 + + + polarity + + + + + A molecular quality that inheres in a molecular entity by virtue of whether or not the molecular entity has a separation of electric charge which leads to the molecule having an electric dipole. + PATOC:JH + + + + + + + + + + Polar polarity is a quality that inheres in a molecular entity when the molecular entity is polar, i.e. does possess an electric dipole. + George Gkoutos + 2010-03-10T03:22:49Z + quality + PATO:0002187 + + polar polarity + + + + + Polar polarity is a quality that inheres in a molecular entity when the molecular entity is polar, i.e. does possess an electric dipole. + PATOC:JH + + + + + + + + + A molecular quality which inheres in a molecular entity when the molecular entity does not possess an electrical dipole. + George Gkoutos + 2010-03-10T03:24:01Z + quality + PATO:0002188 + + nonpolar polarity + + + + + A molecular quality which inheres in a molecular entity when the molecular entity does not possess an electrical dipole. + PATOC:JH + + + + + + + + + The ease of distortion of the electron cloud of a molecular entity by an electric field. + George Gkoutos + 2010-03-10T03:24:47Z + quality + PATO:0002189 + + + electric polarizability + + + + + The ease of distortion of the electron cloud of a molecular entity by an electric field. + PATOC:JH + + + + + + + + + A molecular quality that inheres in a molecular entity by virtue of the presence of a conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. + George Gkoutos + 2010-03-10T03:25:27Z + quality + PATO:0002190 + + + aromaticity + + + + + A molecular quality that inheres in a molecular entity by virtue of the presence of a conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. + PATOC:JH + + + + + + + + + + A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. + + George Gkoutos + 2010-03-10T03:25:59Z + quality + PATO:0002191 + + aromatic + + + + + A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. + PATOC:JH + + + + + + + + + A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic. + + George Gkoutos + 2010-03-10T03:26:41Z + quality + PATO:0002192 + + non-aromatic + + + + + A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic. + PATOC:JH + + + + + + + + + A molecular quality that inheres in a molecular entity by virtue of the overall electric charge of the molecule, which is due to a comparison between the total number of electrons and the total number of protons. + George Gkoutos + 2010-03-10T03:28:54Z + quality + PATO:0002193 + + + electric charge + + + + + A molecular quality that inheres in a molecular entity by virtue of the overall electric charge of the molecule, which is due to a comparison between the total number of electrons and the total number of protons. + PATOC:JH + + + + + + + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing the same amount of electrons overall as protons, thus having an overall neutral charge. + George Gkoutos + 2010-03-10T03:29:37Z + quality + PATO:0002194 + + neutral charge + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing the same amount of electrons overall as protons, thus having an overall neutral charge. + PATOC:JH + + + + + + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge. + + George Gkoutos + 2010-03-10T03:30:06Z + quality + PATO:0002195 + + positive charge + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge. + PATOC:JH + + + + + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge. + + George Gkoutos + 2010-03-10T03:30:39Z + quality + PATO:0002196 + + negative charge + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge. + PATOC:JH + + + + + + + + + A quality that describes the power of an atom to attract electrons to itself . + George Gkoutos + 2010-03-10T03:31:15Z + quality + PATO:0002197 + + + + electronegativity + + + + + A quality that describes the power of an atom to attract electrons to itself . + PATOC:JH + + + + + + + + + A quality inhering in a bearer by virtue of its constitution. + George Gkoutos + 2010-03-15T04:35:27Z + quality + PATO:0002198 + + quality of a substance + + + + + A quality inhering in a bearer by virtue of its constitution. + PATOC:GVG + + + + + + + + + A quality which inheres in a substance by virtue of the ease with which the substance can be changed from a solid to a liquid state especially by the application of heat. + George Gkoutos + 2010-03-15T04:36:57Z + quality + PATO:0002199 + + meltability + + + + + A quality which inheres in a substance by virtue of the ease with which the substance can be changed from a solid to a liquid state especially by the application of heat. + PATOC:JH + + + + + + + + + A quality which inheres in a substance by virtue of the ease with which the substance can be changed into a gaseous state. + George Gkoutos + 2010-03-15T04:38:02Z + quality + PATO:0002200 + + vaporizability + + + + + A quality which inheres in a substance by virtue of the ease with which the substance can be changed into a gaseous state. + PATOC:JH + + + + + + + + + A behavioral quality inhering ina bearer by virtue of the bearer's unequal distribution of fine motor skill between its left and right hands or feet. + haendel + 2010-03-22T05:48:33Z + quality + PATO:0002201 + + + Adapted from Wikipedia and the birnlex term that is dbxref'd. Added on behalf of OBI at March 2010 workshop. + handedness + + + + + A behavioral quality inhering ina bearer by virtue of the bearer's unequal distribution of fine motor skill between its left and right hands or feet. + birnlex:2178 + + + + + + + + + Handedness where the organism preferentially uses the left hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot. + haendel + 2010-03-22T05:49:06Z + quality + PATO:0002202 + + + left handedness + + + + + Handedness where the organism preferentially uses the left hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot. + birnlex:2038 + + + + + + + + + Handedness where the organism preferentially uses the right hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot. + haendel + 2010-03-22T05:49:19Z + quality + PATO:0002203 + + + right handedness + + + + + Handedness where the organism preferentially uses the right hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot. + birnlex:2184 + + + + + + + + + Handedness where the organism exhibits no overall dominance in the use of right or left hand or foot in the performance of tasks that require one hand or foot or a dominant hand or foot. + haendel + 2010-03-22T05:49:30Z + quality + PATO:0002204 + + + ambidextrous handedness + + + + + Handedness where the organism exhibits no overall dominance in the use of right or left hand or foot in the performance of tasks that require one hand or foot or a dominant hand or foot. + birnlex:2042 + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's ability to hold an electrical charge. + George Gkoutos + 2010-03-25T09:42:51Z + quality + PATO:0002205 + + + + Capacitance is also a measure of the amount of electrical energy stored (or separated) for a given electric potential. + capacitance + + + + + A quality inhering in a bearer by virtue of the bearer's ability to hold an electrical charge. + Wikipedia:Wikipedia + + + + + + + + + A maturity quality inhering to a bearer by virtue of the bearer's being at the point or short after birth. + George Gkoutos + 2010-05-07T12:11:47Z + quality + PATO:0002206 + + neonatal + + + + + A maturity quality inhering to a bearer by virtue of the bearer's being at the point or short after birth. + PATOC:GVG + + + + + + + + + A quality that is the distance between the end of the inserted object and the surface of the object into which it penetrates. + George Gkoutos + 2010-05-14T11:40:24Z + quality + PATO:0002207 + + + + insertion depth + + + + + A quality that is the distance between the end of the inserted object and the surface of the object into which it penetrates. + PATOC:GVG + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a spoon. + george + 2010-07-08T12:13:12Z + quality + PATO:0002208 + + spoon-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a spoon. + thefreedictionary:http://www.thefreedictionary.com/spoon-shaped + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having the shape of an incisor tooth. + george + 2010-07-08T12:16:04Z + quality + PATO:0002209 + + incisiform + + + + + A shape quality inhering in a bearer by virtue of the bearer's having the shape of an incisor tooth. + thefreedictionary:http://www.thefreedictionary.com/incisiform + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a teardrop. + george + 2010-07-08T12:19:08Z + bulb-shaped + bulblike + quality + swollen + PATO:0002210 + + bulbous + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a teardrop. + PATOC:GVG + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or inward. + george + 2010-07-08T12:26:45Z + quality + PATO:0002211 + + recurved + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or inward. + merriam-webster:http://www.merriam-webster.com/dictionary/recurved + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being small or narrow in circumference or width in proportion to length or height. + george + 2010-07-08T01:32:26Z + quality + gracile + PATO:0002212 + + slender + + + + + A shape quality inhering in a bearer by virtue of the bearer's being small or narrow in circumference or width in proportion to length or height. + merriam-webster:http://www.merriam-webster.com/dictionary/slender + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate. + george + 2010-07-08T01:47:09Z + quality + PATO:0002213 + + + obclavate + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate. + PATOC:GVG + + + + + + + + + A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having two lobes. + george + 2010-07-08T01:54:08Z + quality + PATO:0002214 + + + bilobed + + + + + A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having two lobes. + thefreedictionary:http://www.thefreedictionary.com/bilobed + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having the shape of a scythe or sickle. + george + 2010-07-08T01:57:46Z + falcate + hooked + scythe-shaped + sickle-shaped + unciform + uncinate + quality + PATO:0002215 + + falciform + + + + + A shape quality inhering in a bearer by virtue of the bearer's having the shape of a scythe or sickle. + merriam-webster:http://www.merriam-webster.com/dictionary/falciform + + + + + + + + + A molecular quality that pertains to the post-translational modification of a protein by the covalent attachment of one or more ubiquitin monomer. + george + 2010-07-08T02:00:37Z + quality + Ubiquitylation + PATO:0002216 + + ubiquinated + + + + + A molecular quality that pertains to the post-translational modification of a protein by the covalent attachment of one or more ubiquitin monomer. + neurolex:http://neurolex.org/ + + + + + + + + + A molecular quality inhering in a bearer by virtue of the bearer's being combined, or impregnated, with nitric acid, or some of its compounds. + george + 2010-07-08T02:04:03Z + quality + PATO:0002217 + + nitrated + + + + + A molecular quality inhering in a bearer by virtue of the bearer's being combined, or impregnated, with nitric acid, or some of its compounds. + neurolex:http://neurolex.org/wiki/Category:Nitrated_Molecular_Quality + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's loss of myelin sheath. + george + 2010-07-08T02:08:06Z + quality + PATO:0002218 + + + For example loss of myelin sheath from a normally myelinated axon or dendrite. + demyelinated + + + + + A quality inhering in a bearer by virtue of the bearer's loss of myelin sheath. + thefreedictionary:http://www.thefreedictionary.com/demyelinated + + + + + + + + + A quality inhering in a bearer that is shaped in the form of a fan. + george + 2010-07-09T01:43:42Z + fan-like + quality + PATO:0002219 + + fan-shaped + + + + + A quality inhering in a bearer that is shaped in the form of a fan. + thefreedictionary:http://www.thefreedictionary.com/fan-shaped + + + + + + + + + + A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group. + + george + 2010-07-09T01:50:14Z + quality + PATO:0002220 + + phosphorylated + + + + + A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group. + wikipedia:en.wikipedia.org/wiki/Phosphorylated + + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups. + + george + 2010-07-09T01:51:52Z + hyperphosphorylated + quality + PATO:0002221 + + increased phosphorylation + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups. + Wikipedia:http://en.wiktionary.org/wiki/hyperphosphorylated + + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully. + + george + 2010-07-09T01:54:22Z + hypophosporylated + quality + PATO:0002222 + + decreased phosphorylation + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully. + Wikipedia:http://en.wiktionary.org/wiki/hypophosphorylated + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having reacted with oxygen, or been modified by oxidation (the reaction in which the atoms of an element lose electrons and the valence of the element increases). + george + 2010-07-09T01:59:35Z + quality + PATO:0002223 + + oxidized + + + + + A quality inhering in a bearer by virtue of the bearer's having reacted with oxygen, or been modified by oxidation (the reaction in which the atoms of an element lose electrons and the valence of the element increases). + Wikipedia:http://en.wiktionary.org/wiki/oxidized + + + + + + + + + An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter V. + george + 2010-07-13T04:12:13Z + quality + PATO:0002224 + + V-shaped + + + + + An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter V. + PATOC:JE + + + + + + + + + An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter L. + george + 2010-07-13T04:14:59Z + quality + PATO:0002225 + + L-shaped + + + + + An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter L. + PATOC:JE + + + + + + + + + A cylindrical shape quality inhering in a bearer by virtue of the bearer's being imperfectly cylindrical or approximately cylindrical. + george + 2010-07-13T04:22:30Z + quality + PATO:0002226 + + subcylindrical + + + + + A cylindrical shape quality inhering in a bearer by virtue of the bearer's being imperfectly cylindrical or approximately cylindrical. + url:http://www.thefreedictionary.com/Subcylindrical + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a cup. + george + 2010-07-13T04:29:32Z + cup-like + quality + PATO:0002227 + + cup-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a cup. + url:http://www.thefreedictionary.com/cup-shaped + + + + + + + + + A tapered shape quality inhering in a bearer by virtue of the bearer's tapering gradually to a sharp point. + george + 2010-07-15T09:03:18Z + quality + PATO:0002228 + + acuminate + + + + + A tapered shape quality inhering in a bearer by virtue of the bearer's tapering gradually to a sharp point. + url:http://www.thefreedictionary.com/acuminate + + + + + + + + + A quadrangular shape quality inhering in a bearer by virtue of the bearer's being approximately rectangular. + george + 2010-07-19T12:18:57Z + quality + PATO:0002229 + + subrectangular + + + + + A quadrangular shape quality inhering in a bearer by virtue of the bearer's being approximately rectangular. + url:http://dictionary.reference.com/browse/subrectangular?qsrc=2446&o=100074 + + + + + + + + + A triangular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, triangular. + george + 2010-07-19T12:20:59Z + quality + PATO:0002230 + + subtriangular + + + + + A triangular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, triangular. + url:http://www.thefreedictionary.com/Subtriangular + + + + + + + + + A split shape quality inhering in a bearer by virtue of the bearer's having or being divided into many lobes or similar segments. + george + 2010-07-19T12:23:02Z + quality + PATO:0002231 + + multifid + + + + + A split shape quality inhering in a bearer by virtue of the bearer's having or being divided into many lobes or similar segments. + url:http://www.thefreedictionary.com/multifid + + + + + + + + + A 2-D shape quality inhering in a bearer by virtue of the bearer's having shape or form of half a circle. + george + 2010-07-19T01:02:27Z + half circle + semicircle + quality + PATO:0002232 + + semicircular + + + + + A 2-D shape quality inhering in a bearer by virtue of the bearer's having shape or form of half a circle. + url:http://www.thefreedictionary.com/semicircle + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located far (not close to) in space in relation to another entity. + george + 2010-07-19T02:43:53Z + distant from + remote from + quality + PATO:0002233 + + + far from + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located far (not close to) in space in relation to another entity. + PATOC:PM + + + + + + + + + A notched shape quality inhering in a bearer by virtue of the bearer's having a notched tip or edge. + george + 2010-07-19T04:25:58Z + quality + PATO:0002234 + + emarginate + + + + + A notched shape quality inhering in a bearer by virtue of the bearer's having a notched tip or edge. + url:http://www.thefreedictionary.com/emarginate + + + + + + + + + A tapered shape quality inhering in a bearer by virtue of the bearer's being flat, slender, and tapering to a point. + george + 2010-07-19T04:29:05Z + blade-shaped + ensiform + sword-like + sword-shaped + quality + PATO:0002235 + + blade-like + + + + + A tapered shape quality inhering in a bearer by virtue of the bearer's being flat, slender, and tapering to a point. + PATOC:JE + + + + + + + + + Shape quality inhering in a bearer by virtue of the bearer's being shaped like a wing. + george + 2010-07-23T02:19:14Z + wing-shaped + quality + PATO:0002236 + + aliform + + + + + Shape quality inhering in a bearer by virtue of the bearer's being shaped like a wing. + url:http://www.thefreedictionary.com/aliform + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or downward. + george + 2010-07-23T02:22:09Z + quality + PATO:0002237 + + retrorse + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or downward. + url:http://www.thefreedictionary.com/retrorse + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved forward or upward. + george + 2010-07-23T02:22:56Z + quality + PATO:0002238 + + antrorse + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved forward or upward. + url:http://www.thefreedictionary.com/antrorse + + + + + + + + + A concave 3-D shape that inheres in the bearer by virtue of the bearer's nearly) symmetric shape wide at its ends and narrow in the middle, resembling the figure of number 8. + george + 2010-07-23T02:25:24Z + figure 8 shaped + quality + PATO:0002239 + + hourglass-shaped + + + + + A concave 3-D shape that inheres in the bearer by virtue of the bearer's nearly) symmetric shape wide at its ends and narrow in the middle, resembling the figure of number 8. + url:http://en.wikipedia.org/wiki/Hourglass-shaped + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop. + george + 2010-07-23T02:31:11Z + drop shaped + quality + PATO:0002240 + + teardrop-shaped + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop. + url:wordnetweb.princeton.edu/perl/webwn + + + + + + + + + A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having three lobes. + george + 2010-07-28T12:57:46Z + quality + PATO:0002241 + + trilobed + + + + + A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having three lobes. + url:http://www.thefreedictionary.com/trilobed + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's rate of change of the position. + george + 2010-07-28T02:52:48Z + quality + PATO:0002242 + + + velocity + + + + + A physical quality inhering in a bearer by virtue of the bearer's rate of change of the position. + url:http://en.wikipedia.org/wiki/Velocity + + + + + + + + + A physical quality inhering in a fluid (liquid or gas) by virtue of the amount of fluid which passes through a given surface per unit time. + george + 2010-07-28T03:00:20Z + volume flow rate + volumetric flow rate + quality + PATO:0002243 + + + fluid flow rate + + + + + A physical quality inhering in a fluid (liquid or gas) by virtue of the amount of fluid which passes through a given surface per unit time. + url:http://en.wikipedia.org/wiki/Volumetric_flow_rate + + + + + + + + + A flow rate quality inhering in a substance by virtue of the mass of substance which passes through a given surface per unit time. + george + 2010-07-28T03:02:03Z + quality + PATO:0002244 + + mass flow rate + + + + + A flow rate quality inhering in a substance by virtue of the mass of substance which passes through a given surface per unit time. + url:http://en.wikipedia.org/wiki/Mass_flow_rate + + + + + + + + + + A force which relative high. + + george + 2010-08-04T11:12:20Z + increased force amplitude + quality + PATO:0002245 + + increased force + + + + + A force which relative high. + PATOC:GVG + + + + + + + + + + A force which is relative low. + + george + 2010-08-04T11:13:13Z + decreased force amplitude + quality + PATO:0002246 + + decreased force + + + + + A force which is relative low. + PATOC:GVG + + + + + + + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's having or lacking of substances produced by living organisms that have a color resulting from selective color absorption. + george + 2010-08-09T04:14:00Z + quality + PATO:0002247 + + + degree of pigmentation + + + + + A quality inhering in a bearer by virtue of the bearer's having or lacking of substances produced by living organisms that have a color resulting from selective color absorption. + url:http://en.wikipedia.org/wiki/Biological_pigment + + + + + + + + + + A degree of pigmentation quality inhering in a bearer by virtue of the bearer's having substances produced by living organisms that have a color resulting from selective color absorption. + + george + 2010-08-09T04:16:49Z + quality + PATO:0002248 + + + pigmented + + + + + A degree of pigmentation quality inhering in a bearer by virtue of the bearer's having substances produced by living organisms that have a color resulting from selective color absorption. + PATOC:GVG + + + + + + + + + A degree of pigmentation quality inhering in a bearer by virtue of the bearer's lacking substances produced by living organisms that have a color resulting from selective color absorption. + + george + 2010-08-09T04:17:04Z + depigmented + quality + PATO:0002249 + + + unpigmented + + + + + A degree of pigmentation quality inhering in a bearer by virtue of the bearer's lacking substances produced by living organisms that have a color resulting from selective color absorption. + PATOC:GVG + + + + + + + + + + A degree of pigmentation quality that is relatively high. + + george + 2010-08-09T04:17:19Z + hyperpigmented + quality + PATO:0002250 + + + increased pigmentation + + + + + A degree of pigmentation quality that is relatively high. + PATOC:GVG + + + + + + + + + + A degree of pigmentation quality that is relative low. + + george + 2010-08-09T04:17:37Z + hypopigmented + quality + PATO:0002251 + + + decreased pigmentation + + + + + A degree of pigmentation quality that is relative low. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being flattened along the antero-posterior axis. + george + 2010-08-16T03:57:42Z + antero-posteriorly compressed + quality + PATO:0002252 + + antero-posteriorly flattened + + + + + A quality inhering in a bearer by virtue of the bearer's being flattened along the antero-posterior axis. + PATOC:JC + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being roundish, flattish shape, possibly with a slightly angled edge. + george + 2010-08-16T03:57:48Z + plate-like + quality + PATO:0002253 + + platelike + + + + + A quality inhering in a bearer by virtue of the bearer's being roundish, flattish shape, possibly with a slightly angled edge. + PATOC:CVC + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's surface becoming more extended in a plane. + george + 2010-08-16T03:59:34Z + quality + compressed + PATO:0002254 + + Becoming flat but not necessarily completely flat. + flattened + + + + + A quality inhering in a bearer by virtue of the bearer's surface becoming more extended in a plane. + PATOC:CVS + + + + + + + + + Texture quality inhering in a bearer by virtue of the bearer's being marked with one or more channels. + george + 2010-09-01T10:27:48Z + quality + channeled + creased + PATO:0002255 + + grooved + + + + + Texture quality inhering in a bearer by virtue of the bearer's being marked with one or more channels. + PATOC:JE + + + + + + + + + A cuscpidate quality inhering in a bearer by virtue of the bearer possessing three cusps. + george + 2010-09-08T02:21:50Z + tricuspid + quality + PATO:0002256 + + tricuspidate + + + + + A cuscpidate quality inhering in a bearer by virtue of the bearer possessing three cusps. + PATOC:WD + + + + + + + + + A cuscpidate quality inhering in a bearer by virtue of the bearer possessing more than one cusp. + george + 2010-09-08T02:23:22Z + quality + PATO:0002257 + + multicuspidate + + + + + A cuscpidate quality inhering in a bearer by virtue of the bearer possessing more than one cusp. + PATOC:WD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a point. + george + 2010-09-08T03:15:16Z + quality + PATO:0002258 + + pointed + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a point. + PATOC:http://www.merriam-webster.com/dictionary/pointed + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located near in space in relation to another entity. + george + 2010-09-08T03:20:06Z + PATO:0001771 + approaches + close to + near to + vicinity of + quality + PATO:0002259 + + + adjacent to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located near in space in relation to another entity. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being partially upright in position or posture. + george + 2010-09-08T03:27:21Z + semi upright + quality + PATO:0002260 + semi erect + + + + + A quality inhering in a bearer by virtue of the bearer's being partially upright in position or posture. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's location within another entity. + george + 2010-09-09T09:36:56Z + quality + PATO:0002261 + + + located in + + + + + A spatial quality inhering in a bearer by virtue of the bearer's location within another entity. + PATOC:WD + + + + + + + + + A quality inhering in a protein or a molecule by virtue of the addition of a phosphate (PO4) group to the bearer. + george + 2010-09-16T08:57:56Z + quality + PATO:0002262 + + + phosphorylation + + + + + A quality inhering in a protein or a molecule by virtue of the addition of a phosphate (PO4) group to the bearer. + url:http://en.wikipedia.org/wiki/Phosphorylation + + + + + + + + + A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group. + + george + 2010-09-16T09:04:21Z + quality + PATO:0002263 + + dephosphorylated + + + + + A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group. + url:http://en.wikipedia.org/wiki/Dephosphorylation + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being arranged in a systematic fashion. + george + 2010-09-16T10:22:52Z + quality + PATO:0002264 + + organization quality + + + + + A structural quality inhering in a bearer by virtue of the bearer's being arranged in a systematic fashion. + PATOC:GVG + + + + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's disposition to exhibit marked activity. + george + 2010-09-21T06:56:58Z + quality + PATO:0002265 + + + + behavioural activity + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's disposition to exhibit marked activity. + PATOC:GVG + + + + + + + + + A shape that inheres in a 3 dimensional entity. + george + 2010-10-05T12:31:16Z + quality + PATO:0002266 + 3-D shape + + + + + A shape that inheres in a 3 dimensional entity. + PATOC:OREGON + + + + + + + + + george + 2010-10-05T12:34:31Z + quality + PATO:0002267 + edge shape + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being located in a position equidistant from edges. + george + 2010-10-05T01:09:32Z + quality + PATO:0002268 + + centered + + + + + A positional quality inhering in a bearer by virtue of the bearer's being located in a position equidistant from edges. + PATOC:OREGON + + + + + + + + + A structural quality of the collection or massing of one physical object within another physical object. + george + 2010-10-26T01:57:02Z + quality + pooled + PATO:0002269 + + + + accumulation + + + + + A structural quality of the collection or massing of one physical object within another physical object. + PATOC:CVC + + + + + + + + + An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner. + + george + 2010-10-26T02:00:20Z + accumulated + quality + PATO:0002270 + + + increased accumulation + + + + + An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner. + PATOC:GVG + + + + + + + + + An accumulation which is relative low. + + george + 2010-10-26T02:04:45Z + quality + PATO:0002271 + + + decreased accumulation + + + + + An accumulation which is relative low. + PATOC:GVG + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located at the same continuous distance relative to another object. + george + 2010-10-26T02:07:42Z + quality + PATO:0002272 + + + parallel to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located at the same continuous distance relative to another object. + PATOC:WD + + + + + + + + + Multicolored quality inhering in a bearer by virtue of the bearer's being colored with a variegated pattern resembling marble,. + george + 2010-11-16T11:17:32Z + quality + PATO:0002273 + + marbled + + + + + Multicolored quality inhering in a bearer by virtue of the bearer's being colored with a variegated pattern resembling marble,. + url:http://www.oed.com/ + + + + + + + + + Multicolored quality inhering in a bearer by virtue of the bearer's being dappled with spots, patches, or blotches of different colors. + george + 2010-11-16T11:22:57Z + quality + PATO:0002274 + + mottled + + + + + Multicolored quality inhering in a bearer by virtue of the bearer's being dappled with spots, patches, or blotches of different colors. + url:http://www.oed.com/ + + + + + + + + + A color pattern quality inhering in a bearer by virtue of the bearer's color pattern in which light and dark colors (for example white and black) are codistributed to create a visual impression. + george + 2010-11-16T11:24:15Z + quality + PATO:0002275 + + high contrast color pattern + + + + + A color pattern quality inhering in a bearer by virtue of the bearer's color pattern in which light and dark colors (for example white and black) are codistributed to create a visual impression. + PATOC:WD + + + + + + + + + A color pattern inhering in a bearer by virtue of bearer's exhibiting vertical bars of one hue or degree of saturation crossing another. + george + 2010-11-16T11:30:40Z + quality + PATO:0002276 + + barred + + + + + A color pattern inhering in a bearer by virtue of bearer's exhibiting vertical bars of one hue or degree of saturation crossing another. + PATOC:WD + + + + + + + + + A quality of certain surfaces which appear to change colour as the angle of view changes. + george + 2010-12-12T12:37:41Z + quality + PATO:0002277 + iridescent + + + + + A quality of certain surfaces which appear to change colour as the angle of view changes. + url:http://en.wikipedia.org/wiki/Iridescence + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's participating in a joint with another entity. + george + 2011-01-20T05:39:18Z + quality + PATO:0002278 + + articulated with + + + + + A structural quality inhering in a bearer by virtue of the bearer's participating in a joint with another entity. + PATOC:WD + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being strongly articulated with another entity. + george + 2011-01-20T05:39:59Z + quality + PATO:0002279 + + tightly articulated with + + + + + A structural quality inhering in a bearer by virtue of the bearer's being strongly articulated with another entity. + PATOC:WD + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's possessing a broad surface in articulation with another entity. + george + 2011-01-20T05:40:29Z + quality + PATO:0002280 + + broadly articulated with + + + + + A structural quality inhering in a bearer by virtue of the bearer's possessing a broad surface in articulation with another entity. + PATOC:WD + + + + + + + + + A cuscpidate quality inhering in a bearer by virtue of the bearer possessing two cusps. + george + 2011-02-07T03:13:18Z + bicuspid + quality + PATO:0002281 + biscupidate + + + + + A cuscpidate quality inhering in a bearer by virtue of the bearer possessing two cusps. + PATOC:GVG + + + + + + + + + + A mobility which is relative high. + + george + 2011-03-09T09:16:03Z + quality + PATO:0002282 + + increased mobility + + + + + A mobility which is relative high. + PATO:GVG + + + + + + + + + + A mobility which is relative low. + + george + 2011-03-09T09:16:47Z + quality + PATO:0002283 + + decreased mobility + + + + + A mobility which is relative low. + PATOC:GVG + + + + + + + + + A physical quality that pertains by virtue of a pulling force that is directed away from the bearer and attempts to stretch or elongate the bearer. + george + 2011-03-10T08:41:21Z + quality + PATO:0002284 + + + tension + + + + + A physical quality that pertains by virtue of a pulling force that is directed away from the bearer and attempts to stretch or elongate the bearer. + PATOC:GVG + + + + + + + + + Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity. + + george + 2011-03-10T09:07:57Z + quality + PATO:0002285 + + increased branchiness + + + + + Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity. + PATOC:CVS + + + + + + + + + Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity. + + george + 2011-03-10T09:08:37Z + quality + PATO:0002286 + + decreased branchiness + + + + + Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity. + PATOC:CVS + + + + + + + + + + An elasticity which is relatively high. + + George Gkoutos + 2011-03-30T11:50:21Z + quality + PATO:0002287 + + increased elasticity + + + + + An elasticity which is relatively high. + PATOC:GVG + + + + + + + + + + An elasticity which is relatively low. + + George Gkoutos + 2011-03-30T11:50:39Z + quality + PATO:0002288 + + decreased elasticity + + + + + An elasticity which is relatively low. + PATOC:GVG + + + + + + + + + A hairy quality inhering in a bearer by virtue of the bearer's being covered with setae. + George Gkoutos + 2011-04-04T08:44:10Z + quality + PATO:0002289 + + Setose as a label is used extensively to describe insect phenotypes that have hairy-like appearances (i.e., they are covered in setae, not the hairs of mammals). A bristle is a type of seta. + setose + + + + + A hairy quality inhering in a bearer by virtue of the bearer's being covered with setae. + ISBN:0913424137 + + + + + + + + + George Gkoutos + 2011-04-18T05:11:33Z + quality + PATO:0002290 + aplastic/hypoplastic + + + + + + + + + Absence of a tissue or organ due to failure to develop. + George Gkoutos + 2011-04-18T05:17:34Z + quality + PATO:0002291 + agenesis + + + + + Absence of a tissue or organ due to failure to develop. + PATO:GVG + + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's underlying structure being capable of change. + George Gkoutos + 2011-05-03T03:01:59Z + transient structure + quality + PATO:0002292 + For example, structures undergoing endochondral ossification change in composition from cartilaginous to ossified. + transient + + + + + A structural quality inhering in a bearer by virtue of the bearer's underlying structure being capable of change. + PATOC:WD + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's underlying structure not changing over time. + George Gkoutos + 2011-05-03T03:03:50Z + permanent structure + quality + PATO:0002293 + permanent + + + + + A structural quality inhering in a bearer by virtue of the bearer's underlying structure not changing over time. + PATOC:WD + + + + + + + + + A texture that is uniformly covered in short, oblong, or trench-like depressions. + George Gkoutos + 2011-05-03T03:12:47Z + quality + PATO:0002294 + scrobiculate + + + + + A texture that is uniformly covered in short, oblong, or trench-like depressions. + Book:Book + + + + + + + + + A surface feature shape inhering in a surface by virtue of the bearer's being divided by ridge-like structures into a number of small, irregular spaces. + George Gkoutos + 2011-05-17T07:57:45Z + quality + PATO:0002295 + + areolate + + + + + A surface feature shape inhering in a surface by virtue of the bearer's being divided by ridge-like structures into a number of small, irregular spaces. + Book:Book + + + + + + + + + A texture quality inhering in a surface by virtue of the bearer's being marked by the presence of small, shallow, regular depressions called fovae. + George Gkoutos + 2011-05-17T07:59:30Z + quality + foveolate + pitted + PATO:0002296 + + foveate + + + + + A texture quality inhering in a surface by virtue of the bearer's being marked by the presence of small, shallow, regular depressions called fovae. + Book:Book + + + + + + + + + + A cellular motility which is lower relative to the normal or average. + + quality + PATO:0002297 + + decreased cellular motility + + + + + A cellular motility which is lower relative to the normal or average. + PATOC:GVG + + + + + + + + + + A cellular motility which is higher relative to the normal or average. + + quality + PATO:0002298 + + increased cellular motility + + + + + A cellular motility which is higher relative to the normal or average. + PATOC:GVG + + + + + + + + + + A cylindrical shape that is hollow. + George Gkoutos + 2011-06-08T06:33:50Z + tube like + tube-shaped + tubulate + quality + PATO:0002299 + tubular + + + + + A cylindrical shape that is hollow. + PATOC:GVG + + + + + + + + + + + + + + + A quality that has a value that is increased compared to normal or average. + + George Gkoutos + 2011-06-16T06:39:43Z + quality + PATO:0002300 + increased quality + + + + + A quality that has a value that is increased compared to normal or average. + PATOC:GVG + + + + + + + + + + + + + + + A quality that has a value that is decreased compared to normal or average. + + George Gkoutos + 2011-06-16T06:40:15Z + quality + PATO:0002301 + decreased quality + + + + + A quality that has a value that is decreased compared to normal or average. + PATOC:GVG + + + + + + + + + + A quality of a process that has a value that is decreased compared to normal or average. + + George Gkoutos + 2011-06-16T06:50:59Z + quality + PATO:0002302 + decreased process quality + + + + + A quality of a process that has a value that is decreased compared to normal or average. + PATOC:GVG + + + + + + + + + + A quality of an object that has a value that is decreased compared to normal or average. + + George Gkoutos + 2011-06-16T06:51:54Z + quality + PATO:0002303 + decreased object quality + + + + + A quality of an object that has a value that is decreased compared to normal or average. + PATOC:GVG + + + + + + + + + + A quality of a process that has a value that is increased compared to normal or average. + + George Gkoutos + 2011-06-16T06:53:08Z + quality + PATO:0002304 + increased process quality + + + + + A quality of a process that has a value that is increased compared to normal or average. + PATOC:GVG + + + + + + + + + + A quality of an object that has a value that is increased compared to normal or average. + + George Gkoutos + 2011-06-16T06:54:01Z + quality + PATO:0002305 + increased object quality + + + + + A quality of an object that has a value that is increased compared to normal or average. + PATOC:GVG + + + + + + + + + + + A triangular quality inhering in a bearer by virtue of the bearer's having all sides of the same length. + George Gkoutos + 2011-06-27T11:22:50Z + quality + PATO:0002306 + + equilateral triangular + + + + + A triangular quality inhering in a bearer by virtue of the bearer's having all sides of the same length. + PATOC:JB + + + + + + + + + + A triangular quality inhering in a bearer by virtue of the bearer's having two sides have the same length. + George Gkoutos + 2011-06-27T11:23:52Z + quality + PATO:0002307 + + isosceles triangular + + + + + A triangular quality inhering in a bearer by virtue of the bearer's having two sides have the same length. + PATOC:JB + + + + + + + + + A triangular quality inhering in a bearer by virtue of the bearer's having all sides of unequal length. + George Gkoutos + 2011-06-27T11:24:24Z + quality + PATO:0002308 + + scalene triangular + + + + + A triangular quality inhering in a bearer by virtue of the bearer's having all sides of unequal length. + PATOC:JB + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a by virtue of the bearer's exhibiting a consistently sized and approximately round cross-section along its length, which is many times larger than its diameter. + George Gkoutos + 2011-09-09T04:50:10Z + quality + PATO:0002309 + + Note that a fiber shaped object may take any circuitous or straight path through space (think of a length of string or rope). + fiber shaped + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a by virtue of the bearer's exhibiting a consistently sized and approximately round cross-section along its length, which is many times larger than its diameter. + PATOC:DC + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being strong, thick or sturdy. + George Gkoutos + 2011-09-20T06:23:31Z + quality + PATO:0002310 + + robust + + + + + A quality inhering in a bearer by virtue of the bearer's being strong, thick or sturdy. + PATOC:BF + + + + + + + + + Having a fringe or border of hairlike or fingerlike projections. + George Gkoutos + 2011-09-22T03:52:11Z + quality + PATO:0002311 + + fimbriated + + + + + Having a fringe or border of hairlike or fingerlike projections. + PATO:WS + + + + + + + + + Consisting of segments or similar parts arranged in a longitudinal series. + George Gkoutos + 2011-10-03T03:42:23Z + quality + PATO:0002312 + + + segmented + + + + + Consisting of segments or similar parts arranged in a longitudinal series. + OED: + + + + + + + + + Having or resembling the shape of a telescope. + George Gkoutos + 2011-10-03T03:49:26Z + quality + PATO:0002313 + + telescopic + + + + + Having or resembling the shape of a telescope. + PATOC:BF + + + + + + + + + Having the nature or characteristic of, a ligament; composed of the tissue proper to ligaments. + George Gkoutos + 2011-10-03T03:57:39Z + quality + PATO:0002314 + + ligamentous + + + + + Having the nature or characteristic of, a ligament; composed of the tissue proper to ligaments. + PATOC:BF + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's resembling the end of a brush with a multitude of bristles. + George Gkoutos + 2011-10-03T03:59:59Z + quality + PATO:0002315 + + brush-like shape + + + + + A shape quality inhering in a bearer by virtue of the bearer's resembling the end of a brush with a multitude of bristles. + PATOC:BF + + + + + + + + + Being separate or discrete from other skeletal elements. + George Gkoutos + 2011-10-03T04:17:08Z + quality + free + PATO:0002316 + + autogenous + + + + + Being separate or discrete from other skeletal elements. + PATOC:WD + + + + + + + + + A convex quadrilateral is a parallelogram if and only if any one of the following statements are true: +1. Each diagonal divides the quadrilateral into two congruent triangles with the same orientation. +2. The opposite sides are congruent in pairs. +3. The diagonals bisect each other. +4. The opposite angles are congruent in pairs. +5. The sum of the squares of the sides equals the sum of the squares of the diagonals. (This is the parallelogram law) +6.It possesses rotational symmetry. +7.One pair of opposite sides are parallel and congruent. +8.Two pairs of adjacent angles are supplementary. + George Gkoutos + 2011-10-12T12:33:07Z + quality + PATO:0002317 + + parallelogram + + + + + A convex quadrilateral is a parallelogram if and only if any one of the following statements are true: +1. Each diagonal divides the quadrilateral into two congruent triangles with the same orientation. +2. The opposite sides are congruent in pairs. +3. The diagonals bisect each other. +4. The opposite angles are congruent in pairs. +5. The sum of the squares of the sides equals the sum of the squares of the diagonals. (This is the parallelogram law) +6.It possesses rotational symmetry. +7.One pair of opposite sides are parallel and congruent. +8.Two pairs of adjacent angles are supplementary. + wikipedia:Parallelogram + + + + + + + + + A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt + George Gkoutos + 2011-10-12T12:45:16Z + Lamé curve + quality + PATO:0002318 + superelliptic + + + + + A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt + wiktionary:superellipse + + + + + + + + + A shape with properties between those of a square and those of a circle. + George Gkoutos + 2011-10-12T12:47:48Z + quality + PATO:0002319 + + squircle + + + + + A shape with properties between those of a square and those of a circle. + wikipedia:Squircle + + + + + + + + + A superelptic shape inhering in a bearer by virtue of the bearer's shape resembling a diamond. + George Gkoutos + 2011-10-12T12:49:06Z + quality + PATO:0002320 + + diamond shaped + + + + + A superelptic shape inhering in a bearer by virtue of the bearer's shape resembling a diamond. + PATO:WC + + + + + + + + + + George Gkoutos + 2011-10-12T12:50:59Z + quality + PATO:0002321 + hypoelliptic + + + + + + + + + + George Gkoutos + 2011-10-12T12:51:19Z + quality + PATO:0002322 + hyperelliptic + + + + + + + + + A temporal distribution pattern of process occurrences within a regulation/reference process. + George Gkoutos + 2011-11-22T01:12:28Z + quality + PATO:0002323 + + temporal distribution quality + + + + + A temporal distribution pattern of process occurrences within a regulation/reference process. + PATOC:LC + + + + + + + + + The temporal relation between the end of the process with respect to a reference process. + George Gkoutos + 2011-11-23T11:46:00Z + quality + completeness + extent + PATO:0002324 + + offset quality + + + + + The temporal relation between the end of the process with respect to a reference process. + PATOC:LC + + + + + completeness + GOC:CJM + + + + + extent + GOC:CJM + + + + + + + + + The temporal relation between the start of the process with respect to a reference process. + George Gkoutos + 2011-11-23T11:47:34Z + quality + initiation + PATO:0002325 + + onset quality + + + + + The temporal relation between the start of the process with respect to a reference process. + PATOC:LC + + + + + + + + + An orientation inhering in a bearer by virtue of the bearer's placement at an angle. + George Gkoutos + 2011-11-23T12:06:09Z + quality + PATO:0002326 + + + angle + + + + + An orientation inhering in a bearer by virtue of the bearer's placement at an angle. + PATOC:GVG + + + + + + + + + + An angle which is relatively high. + + George Gkoutos + 2011-11-23T12:06:38Z + quality + PATO:0002327 + + + increased angle to + + + + + An angle which is relatively high. + PATOC:GVG + + + + + + + + + + An angle which is relatively low. + + George Gkoutos + 2011-11-23T12:06:54Z + quality + PATO:0002328 + + + decreased angle to + + + + + An angle which is relatively low. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's exhibiting a upward bending of its leaves or other plant parts. + gkoutos + 2012-01-31T11:40:23Z + quality + PATO:0002329 + + hyponastic + + + + + A shape quality inhering in a bearer by virtue of the bearer's exhibiting a upward bending of its leaves or other plant parts. + PATOC:DS + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being extended along a straight line, and is shaped like a reversed lance-point, with the tapering point attached to the leafstalk. + gkoutos + 2012-01-31T11:57:54Z + quality + PATO:0002330 + + oblanceolate + + + + + A quality inhering in a bearer by virtue of the bearer's being extended along a straight line, and is shaped like a reversed lance-point, with the tapering point attached to the leafstalk. + PATOC:PG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact. + + gkoutos + 2012-01-31T12:28:16Z + quality + resinous + PATO:0002331 + + adhesive + + + + + A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact. + PATOC:GVG + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact. + + gkoutos + 2012-01-31T12:28:57Z + quality + non-resinous + PATO:0002332 + + non-adhesive + + + + + A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact. + PATOC:GVG + + + + + + + + + + A adhesivity which is relatively high. + + gkoutos + 2012-01-31T12:32:43Z + quality + PATO:0002333 + + increased adhesivity + + + + + A adhesivity which is relatively high. + PATOC:GVG + + + + + + + + + + A adhesivity which is relatively low. + + gkoutos + 2012-01-31T12:42:22Z + quality + PATO:0002334 + decreased adhesivity + + + + + A adhesivity which is relatively low. + PATOC:GVG + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being dome-shaped. + gkoutos + 2012-01-31T02:32:14Z + quality + PATO:0002335 + + tholiform + + + + + A shape quality inhering in a bearer by virtue of the bearer's being dome-shaped. + PATOC:dd + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having triangular faces that meet at a common point and containing a polygonal shaped base. + gkoutos + 2012-01-31T02:35:02Z + quality + PATO:0002336 + + pyramidal + + + + + A shape quality inhering in a bearer by virtue of the bearer's having triangular faces that meet at a common point and containing a polygonal shaped base. + PATOC:DD + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; characterized with an egg-shaped form crossed with a lance-head shaped form. + gkoutos + 2012-01-31T02:43:15Z + quality + PATO:0002337 + + lance-ovate + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; characterized with an egg-shaped form crossed with a lance-head shaped form. + PATOC:DD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle together forming three angles; attached at the broad end. + gkoutos + 2012-01-31T02:46:43Z + quality + PATO:0002338 + + lanceolate-triangular + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle together forming three angles; attached at the broad end. + PATOC:DD + + + + + + + + + A quality of being covered with stiff or rough hairs. + gkoutos + 2012-01-31T02:51:37Z + quality + PATO:0002339 + + hispid + + + + + A quality of being covered with stiff or rough hairs. + PATOC:GVG + + + + + + + + + A quality of being minutely hispid. + gkoutos + 2012-01-31T02:53:21Z + quality + PATO:0002340 + + hispidulous + + + + + A quality of being minutely hispid. + PATOC:DD + + + + + + + + + A quality of being covered with short, dense, matted hairs. + gkoutos + 2012-01-31T02:55:56Z + quality + PATO:0002341 + + tomentose + + + + + A quality of being covered with short, dense, matted hairs. + thefreedictionary:www.thefreedictionary.com + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being a cupule, with a structure similar to a cup that also encloses the ovule in partiality. + gkoutos + 2012-01-31T02:59:07Z + quality + PATO:0002342 + + cupulate + + + + + A quality inhering in a bearer by virtue of the bearer's being a cupule, with a structure similar to a cup that also encloses the ovule in partiality. + PATOC:DD + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's lying or growing on the ground but with erect or rising tips. + gkoutos + 2012-01-31T03:13:12Z + quality + PATO:0002343 + + decumbent + + + + + A positional quality inhering in a bearer by virtue of the bearer's lying or growing on the ground but with erect or rising tips. + thefreedictionary:www.thefreedictionary.com + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being characterized by fine, entangled hairs giving the appearance of cobweb. + gkoutos + 2012-01-31T03:49:00Z + quality + PATO:0002344 + + arachnose + + + + + A quality inhering in a bearer by virtue of the bearer's being characterized by fine, entangled hairs giving the appearance of cobweb. + PATOC:DD + + + + + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc + gkoutos + 2012-01-31T03:55:16Z + quality + PATO:0002345 + + lemon-shaped + + + + + A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc + PATOC:MH + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two connected parts, roughly spherical, of different sizes. + gkoutos + 2012-01-31T03:58:10Z + quality + PATO:0002346 + + snowman-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two connected parts, roughly spherical, of different sizes. + PATOC:MH + + + + + + + + + A conical quality inhering in a bearer by virtue of the bearer's resembling a cone, with the pointed end attached to an organism. + gkoutos + 2012-01-31T04:05:28Z + quality + PATO:0002347 + + obconical + + + + + A conical quality inhering in a bearer by virtue of the bearer's resembling a cone, with the pointed end attached to an organism. + wiktionary:http://en.wiktionary.org/wiki/obconical + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer resembling wood. + gkoutos + 2012-01-31T04:06:50Z + quality + PATO:0002348 + + ligneous + + + + + A structural quality inhering in a bearer by virtue of the bearer resembling wood. + merriam-webster:http://www.merriam-webster.com/dictionary/ligneous + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the base of an organism relative to another entity. + gkoutos + 2012-01-31T04:12:25Z + quality + PATO:0002349 + + basal to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the base of an organism relative to another entity. + merriam-webster:http://www.merriam-webster.com/dictionary/basal + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the stalk of an organism relative to another entity. + gkoutos + 2012-01-31T04:13:06Z + quality + PATO:0002350 + + cauline to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the stalk of an organism relative to another entity. + merriam-webster:http://www.merriam-webster.com/dictionary/cauline + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer resembling or containing flesh. + gkoutos + 2012-01-31T04:15:30Z + quality + PATO:0002351 + + fleshy + + + + + A structural quality inhering in a bearer by virtue of the bearer resembling or containing flesh. + wiktionary:http://en.wiktionary.org/wiki/fleshy + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's upper parts die back to the rootstock at the end of the growing season. + gkoutos + 2012-01-31T04:29:36Z + quality + PATO:0002352 + + herbaceous + + + + + A quality inhering in a bearer by virtue of the bearer's upper parts die back to the rootstock at the end of the growing season. + PATOC:PG + + + + + + + + + A quality that inheres in a bearer in virtue of its realizing one of its functions. + gkoutos + 2012-01-31T04:51:42Z + quality + PATO:0002353 + + activation quality + + + + + A quality that inheres in a bearer in virtue of its realizing one of its functions. + PATOC:RH + + + + + + + + + A quality of an physical object that is currently realizing one of its functions. + + gkoutos + 2012-01-31T04:52:04Z + quality + PATO:0002354 + + active + + + + + A quality of an physical object that is currently realizing one of its functions. + PATOC:RH + + + + + + + + + A quality of a physical object that is currently realizing none of its functions. + + gkoutos + 2012-01-31T04:52:14Z + quality + PATO:0002355 + + inactive + + + + + A quality of a physical object that is currently realizing none of its functions. + PATOC:RH + + + + + + + + + A quality of a physical object that has been constantly realizing some of its functions. + gkoutos + 2012-01-31T04:52:24Z + quality + PATO:0002356 + + constitutively active + + + + + A quality of a physical object that has been constantly realizing some of its functions. + PATOC:RH + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a strait side and an arched side giving the bearer the form of the letter D. + gkoutos + 2012-02-21T11:46:51Z + quality + PATO:0002357 + + D-shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a strait side and an arched side giving the bearer the form of the letter D. + PATOC:AE + + + + + + + + + An elongated raised margin or border. + gkoutos + 2012-02-21T12:27:39Z + ridge-like + quality + PATO:0002358 + + ridged + + + + + An elongated raised margin or border. + PATOC:GVG + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's width being notably higher than its length. + gkoutos + 2012-03-13T06:04:00Z + quality + PATO:0002359 + + broad + + + + + A quality inhering in a bearer by virtue of the bearer's width being notably higher than its length. + PATOC:GVG + + + + + + + + + A disposition that can be compared on a linear scale - that is that it can be increased or decreased. + gkoutos + 2012-03-16T06:31:50Z + quality + PATO:0002360 + + + + tendency + + + + + A disposition that can be compared on a linear scale - that is that it can be increased or decreased. + PATOC:RH + + + + + + + + + + A tendency which is relatively high. + + gkoutos + 2012-03-16T06:31:57Z + quality + PATO:0002361 + + + + increased tendency + + + + + A tendency which is relatively high. + PATOC:GVG + + + + + + + + + + A tendency which is relatively low. + + gkoutos + 2012-03-16T06:32:57Z + quality + PATO:0002362 + + + + decreased tendency + + + + + A tendency which is relatively low. + PATOC:GVG + + + + + + + + + A medium brown color with a metallic sheen, resembles the actual alloy bronze. + gkoutos + 2012-05-03T11:08:18Z + quality + PATO:0002363 + + bronze + + + + + A medium brown color with a metallic sheen, resembles the actual alloy bronze. + PATO:LC + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width. + + gkoutos + 2012-04-18T06:31:29Z + quality + PATO:0002364 + + shortened + + + + + A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width. + PATOC:GVG + + + + + + + + + Female quality of having complete, unaltered reproductive organs + gkoutos + 2012-05-03T11:18:41Z + quality + PATO:0002365 + + intact female + + + + + Female quality of having complete, unaltered reproductive organs + PATOC:MF + + + + + + + + + Male quality of having complete, unaltered reproductive organs. + gkoutos + 2012-05-03T11:19:06Z + quality + PATO:0002366 + + intact male + + + + + Male quality of having complete, unaltered reproductive organs. + PATOC:MF + + + + + + + + + Male quality of being incapable to reproduce because of functional loss of the testicles from surgical removal or chemical means. + gkoutos + 2012-05-03T11:22:29Z + quality + PATO:0002367 + + castrated male + + + + + Male quality of being incapable to reproduce because of functional loss of the testicles from surgical removal or chemical means. + PATOC:MF + + + + + + + + + A viviparous organism having never given birth. + gkoutos + 2012-05-03T11:25:25Z + quality + PATO:0002368 + + nulliparous + + + + + A viviparous organism having never given birth. + PATOC:mf + + + + + + + + + A viviparous organism that has given birth two or more times. + gkoutos + 2012-05-03T11:26:34Z + quality + PATO:0002369 + + multiparous + + + + + A viviparous organism that has given birth two or more times. + wiki:http://en.wikipedia.org/wiki/Parity_(biology) + + + + + + + + + The number of time that a viviparous organism has given birth. + gkoutos + 2012-05-03T11:27:56Z + quality + PATO:0002370 + + parity + + + + + The number of time that a viviparous organism has given birth. + wiki:http://en.wikipedia.org/wiki/Parity_(biology) + + + + + + + + + A viviparous organism having given birth one time. + gkoutos + 2012-05-03T11:29:38Z + quality + PATO:0002371 + + primiparous + + + + + A viviparous organism having given birth one time. + wiki:http://en.wikipedia.org/wiki/Parity_(biology) + + + + + + + + + A viviparous organism that has given birth five or more times. + gkoutos + 2012-05-03T11:30:28Z + quality + PATO:0002372 + + grand multi[arous + + + + + A viviparous organism that has given birth five or more times. + wiki:http://en.wikipedia.org/wiki/Parity_(biology) + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the mediolateral axis. + gkoutos + 2012-07-05T01:49:04Z + quality + PATO:0002373 + + mediolateral polarity + + + + + A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the mediolateral axis. + PATOC:DS + + + + + + + + + Recurrent and often more or less cyclic alteration. + gkoutos + 2012-07-05T01:52:36Z + quality + PATO:0002374 + + fluctuating + + + + + Recurrent and often more or less cyclic alteration. + PATOC:DS + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a trumpet. + gkoutos + 2012-07-05T02:45:17Z + quality + PATO:0002375 + + trumpet-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a trumpet. + PATOC:DS + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's being filled with air. + + gkoutos + 2012-07-05T02:55:10Z + air-filled + quality + PATO:0002376 + + inflated + + + + + A structure quality inhering in a bearer by virtue of the bearer's being filled with air. + PATOC:CVS + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's being not filed with air. + + gkoutos + 2012-07-05T02:56:07Z + quality + PATO:0002377 + + uninflated + + + + + A structure quality inhering in a bearer by virtue of the bearer's being not filed with air. + PATOC:CVS + + + + + + + + + Having a shape that resembles a many-lobed "berry," such as a raspberry. + gkoutos + 2012-07-05T02:58:05Z + quality + PATO:0002378 + + + acinus + + + + + Having a shape that resembles a many-lobed "berry," such as a raspberry. + wikipedia:https://en.wikipedia.org/wiki/Acinus + + + + + + + + + A female fertility quality inhering in a female by virtue of the bearer's not being capable of reproducing because of surgical removal of ovaries and uterus. + gkoutos + 2012-07-05T03:04:28Z + quality + PATO:0002379 + + ovariohysterectomized female + + + + + A female fertility quality inhering in a female by virtue of the bearer's not being capable of reproducing because of surgical removal of ovaries and uterus. + PATOC:MF + + + + + + + + + A female fertility quality inhering in a female by virtue of the bearer's not being capable of reproducing because of surgical removal of ovaries. + gkoutos + 2012-07-05T03:06:12Z + quality + PATO:0002380 + + ovariectomized female + + + + + A female fertility quality inhering in a female by virtue of the bearer's not being capable of reproducing because of surgical removal of ovaries. + PATOC:MF + + + + + + + + + A composition quality inhering in an bearer by virtue of the presence of long chain aliphatic lipids on the surface of an organism. + gkoutos + 2012-07-05T03:17:00Z + quality + PATO:0002381 + + waxiness + + + + + A composition quality inhering in an bearer by virtue of the presence of long chain aliphatic lipids on the surface of an organism. + PATOC:lm + + + + + + + + + + A waxiness which is relatively high. + + gkoutos + 2012-07-05T03:18:03Z + quality + PATO:0002382 + + increased waxiness + + + + + A waxiness which is relatively high. + PATOC:GVG + + + + + + + + + + A waxiness which is relatively low. + + gkoutos + 2012-07-05T03:18:14Z + quality + PATO:0002383 + decreased waxiness + + + + + + + + + Presence of long chain aliphatic lipids on the surface of an organism. + gkoutos + 2012-07-05T03:18:21Z + quality + PATO:0002384 + + + waxy + + + + + Presence of long chain aliphatic lipids on the surface of an organism. + PATOC:lm + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines, usually parallel, with at least one salient angle on the margin + gkoutos + 2012-07-05T05:17:07Z + quality + PATO:0002385 + + striate-angular + + + + + A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines, usually parallel, with at least one salient angle on the margin + FNA:FNA + + + + + + + + + A concave 3-D shape that inheres in the bearer by virtue of the bearer's shape that is wider at one end and narrow in the middle. + gkoutos + 2012-07-23T03:13:41Z + anvil shaped + quality + PATO:0002386 + anvil + + + + + A concave 3-D shape that inheres in the bearer by virtue of the bearer's shape that is wider at one end and narrow in the middle. + PATOC:AD + + + + + + + + + Extremely acute and aggressive onset of a pathological process. + gkoutos + 2012-09-15T02:57:46Z + per-acute + quality + PATO:0002387 + + + peracute + + + + + Extremely acute and aggressive onset of a pathological process. + PATOC:PNS + + + + + + + + + Being supported by a peduncle or stalk. + gkoutos + 2012-10-12T01:10:41Z + quality + PATO:0002388 + + + pedunculate + + + + + Being supported by a peduncle or stalk. + PATOC:GV + + + + + + + + + Growing horizontal to the ground without setting roots. + gkoutos + 2012-10-12T01:33:50Z + quality + PATO:0002389 + + procumbent + + + + + Growing horizontal to the ground without setting roots. + PATO:PG + + + + + + + + + A length quality which is equal to the length of any straight line segment that passes from the center of a circle to any endpoint on the circular boundary. The radius is half of the diameter. + gkoutos + 2012-11-15T05:17:15Z + quality + PATO:0002390 + + + radius + + + + + A length quality which is equal to the length of any straight line segment that passes from the center of a circle to any endpoint on the circular boundary. The radius is half of the diameter. + PATO:DS + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having three rays or radiating branches. + gkoutos + 2012-11-15T05:19:32Z + quality + PATO:0002391 + + triradiate + + + + + A shape quality inhering in a bearer by virtue of the bearer's having three rays or radiating branches. + merriam-webster:merriam-webster + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located on a sloping line joining two nonconsecutive points of an entity relative to another entity. + gkoutos + 2012-11-15T05:21:51Z + quality + PATO:0002392 + + + diagonal to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located on a sloping line joining two nonconsecutive points of an entity relative to another entity. + PATOC:GVG + + + + + + + + + + A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus. + + gkoutos + 2012-11-15T05:32:07Z + quality + PATO:0002393 + + + increased tolerance to + + + + + A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus. + PATOC:LC + + + + + + + + + + A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus. + + gkoutos + 2012-11-15T05:33:05Z + quality + PATO:0002394 + + + decreased tolerance to + + + + + A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus. + PATOC:LC + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned away from the axis of an organism. + gkoutos + 2012-11-20T04:13:32Z + quality + PATO:0002395 + + mislocalized abaxially + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned away from the axis of an organism. + PATOC:EH + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the axis of an organism. + gkoutos + 2012-11-20T04:15:12Z + quality + PATO:0002396 + + mislocalized adaxially + + + + + A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the axis of an organism. + PATOC:EH + + + + + + + + + A circular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, circular. + gkoutos + 2012-12-07T05:32:18Z + quality + round + rounded + PATO:0002397 + + subcircular + + + + + A circular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, circular. + PATOC:AD + + + + + + + + gkoutos + 2012-12-07T05:34:16Z + quality + PATO:0002398 + obsolete <new term> + true + + + + + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the front and the middle of an organism. + gkoutos + 2012-12-07T05:41:01Z + quality + PATO:0002399 + + + anteromedially rotated + + + + + A rotation quality inhering in a bearer by virtue of being rotated towards the front and the middle of an organism. + PATOC:JI + + + + + + + + + Having a spindle-like shape that is wide in the middle and tapers at both ends. + gkoutos + 2012-12-07T05:43:25Z + quality + PATO:0002400 + + + fusiform + + + + + Having a spindle-like shape that is wide in the middle and tapers at both ends. + wikipedia:wikipedia + + + + + + + + + characterised by an unidentifiable pattern. + gkoutos + 2012-12-17T10:37:55Z + quality + PATO:0002401 + + + random pattern + + + + + characterised by an unidentifiable pattern. + PATOC:MPATH + + + + + + + + + Multiple lesions some interconnecting with each other. + gkoutos + 2012-12-17T10:40:18Z + quality + PATO:0002402 + + + multifocal to coalescing + + + + + Multiple lesions some interconnecting with each other. + PATOC:MPATH + + + + + + + + + Affecting all regions without specificity of distribution. + gkoutos + 2012-12-17T10:41:37Z + generalised + quality + PATO:0002403 + + + + generalized + + + + + Affecting all regions without specificity of distribution. + PATOC:MPTH + + + + + + + + + Affecting a segment or segments. + gkoutos + 2012-12-17T10:43:13Z + quality + PATO:0002404 + + + segmental + + + + + Affecting a segment or segments. + PATOC:MPATH + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to be reduced to smaller pieces with little effort. + gkoutos + 2012-12-17T10:47:16Z + quality + PATO:0002405 + + + friability + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to be reduced to smaller pieces with little effort. + Wikipedia:https://en.wikipedia.org/wiki/Friability + + + + + + + + + Easily reduced to powder or easily fragmentable or crumbly. + gkoutos + 2012-12-17T10:48:30Z + quality + PATO:0002406 + + + friable + + + + + Easily reduced to powder or easily fragmentable or crumbly. + PATOC:MPATH + + + + + + + + + Having become firm or hard especially by increase of fibrous elements. + gkoutos + 2012-12-17T10:49:11Z + quality + PATO:0002407 + + + indurated + + + + + Having become firm or hard especially by increase of fibrous elements. + mw:http://www.merriam-webster.com/dictionary/indurated + + + + + + + + + Having the consistency of water. + gkoutos + 2012-12-17T10:51:32Z + quality + PATO:0002408 + + + watery + + + + + Having the consistency of water. + PATOC:MPATH + + + + + + + + + Bounded structure filled with fluid. + gkoutos + 2012-12-17T10:53:18Z + quality + PATO:0002409 + + + fluid-filled + + + + + Bounded structure filled with fluid. + PATOC:MPATH + + + + + + + + + A colour that is very pale yellowish brown. + gkoutos + 2012-12-17T10:54:55Z + quality + PATO:0002410 + + + beige + + + + + A colour that is very pale yellowish brown. + PATOC:MPATH + + + + + + + + + A color consisting of yellow and brown hue. + gkoutos + 2012-12-17T10:55:51Z + quality + PATO:0002411 + + yellow brown + + + + + A color consisting of yellow and brown hue. + PATOC:GVG + + + + + + + + + A color consisting of yellow and brown hue and low brightness. + gkoutos + 2012-12-17T10:56:22Z + quality + PATO:0002412 + + dark yellow brown + + + + + A color consisting of yellow and brown hue and low brightness. + PATOC:GVG + + + + + + + + + A color consisting of yellow and brown hue and high brightness. + gkoutos + 2012-12-17T10:57:27Z + quality + PATO:0002413 + light yellow brown + + + + + A color consisting of yellow and brown hue and high brightness. + PATOC:GVG + + + + + + + + + A quality of duration having progressive course of indefinite duration with active, acute-like elements. + gkoutos + 2012-12-17T10:59:58Z + quality + PATO:0002414 + + + chronic-active + + + + + A quality of duration having progressive course of indefinite duration with active, acute-like elements. + PATOC:MPATH + + + + + + + + + Single lesion with expansion into surrounding tissue. + gkoutos + 2012-12-17T11:01:31Z + quality + PATO:0002415 + + + focally extensive + + + + + Single lesion with expansion into surrounding tissue. + PATOC:MPATH + + + + + + + + + Flattened from above downward; below the normal level or the level of the surrounding parts. + gkoutos + 2012-12-17T12:06:55Z + quality + PATO:0002416 + + + sunken + + + + + Flattened from above downward; below the normal level or the level of the surrounding parts. + PATOC:MPATH + + + + + + + + + Extending through or affecting the entire thickness of the wall of an organ or cavity or boundary. + gkoutos + 2012-12-17T02:16:18Z + quality + PATO:0002417 + + + transmural + + + + + Extending through or affecting the entire thickness of the wall of an organ or cavity or boundary. + PATOC:MPATH + + + + + + + + + An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for acidic dyes under specific ph conditions. + gkoutos + 2012-12-17T03:01:19Z + quality + PATO:0002418 + + + acidophilic + + + + + An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for acidic dyes under specific ph conditions. + PATOC:GVG + + + + + + + + + An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for eosin dye. + gkoutos + 2012-12-17T03:02:09Z + quality + PATO:0002419 + + + eosinophilic + + + + + An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for eosin dye. + PATOC:GVG + + + + + + + + + Having both hydrophilic and hydrophobic (or lipophilic) groups. + gkoutos + 2012-12-17T03:04:39Z + quality + PATO:0002420 + + + amphiphilic + + + + + Having both hydrophilic and hydrophobic (or lipophilic) groups. + wikipedia:http://en.wiktionary.org/wiki/amphiphilic + + + + + + + + + Having or resembling the characteristic of a cicatrix - a scar resulting from formation and contraction of fibrous tissue. + gkoutos + 2012-12-17T03:08:09Z + quality + PATO:0002421 + + + cicatricial + + + + + Having or resembling the characteristic of a cicatrix - a scar resulting from formation and contraction of fibrous tissue. + mw:http://www.merriam-webster.com/dictionary/cicatricial + + + + + + + + + Pertaining to the individual parts making up an aggregate fruit like a many-lobed "berry," such as a raspberry. + gkoutos + 2012-12-17T03:11:10Z + quality + PATO:0002422 + + + Acinus is Latin for berry. + acinar + + + + + Pertaining to the individual parts making up an aggregate fruit like a many-lobed "berry," such as a raspberry. + wikipedia:https://en.wikipedia.org/wiki/Acinus + + + + + + + + + A round or lobulated protruding form resembling a nipple. + gkoutos + 2012-12-17T03:13:44Z + quality + PATO:0002423 + + + papillomatous + + + + + A round or lobulated protruding form resembling a nipple. + PATOC:MPATH + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's having two or more entities that extend from a common point in different directions. + gkoutos + 2012-12-20T11:43:47Z + quality + PATO:0002424 + + + divergent from + + + + + A positional quality inhering in a bearer by virtue of the bearer's having two or more entities that extend from a common point in different directions. + PATOC:AD + + + + + + + + + Open to view or not covered by another entity. + gkoutos + 2012-12-20T11:47:16Z + quality + PATO:0002425 + + exposed + + + + + Open to view or not covered by another entity. + PATOC:WD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped like a boat. + gkoutos + 2013-01-29T09:12:03Z + quality + PATO:0002426 + + scaphoid + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped like a boat. + wordnetweb:wordnetweb + + + + + + + + + A surface feature shape having numerous very small circular rounded projections or protuberances. + gkoutos + 2013-01-29T09:15:53Z + quality + PATO:0002427 + + knobbled + + + + + A surface feature shape having numerous very small circular rounded projections or protuberances. + thefreedictionary.com:thefreedictionary.com + + + + + + + + + A 3-D shape with three supports or legs. + gkoutos + 2013-01-29T09:18:44Z + quality + PATO:0002428 + + tripodal + + + + + A 3-D shape with three supports or legs. + PATOC:WC + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter X. + gkoutos + 2013-01-29T09:19:53Z + quality + PATO:0002429 + + x-shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter X. + PATOC:WC + + + + + + + + + A shape quality in which the bearer is shaped like a narrow band; ligulate. + gkoutos + 2013-01-29T09:21:17Z + quality + PATO:0002430 + + strap-shaped + + + + + A shape quality in which the bearer is shaped like a narrow band; ligulate. + thefreedictionary:thefreedictionary + + + + + + + + + A shape quality in which the bearer possesses a gradual, yet distinct, thinning from a wide starting point. + gkoutos + 2013-01-29T09:24:46Z + quality + PATO:0002431 + + waisted + + + + + A shape quality in which the bearer possesses a gradual, yet distinct, thinning from a wide starting point. + PATOC:WC + + + + + + + + + A shape that is in the form of a spade. + gkoutos + 2013-01-29T09:26:49Z + quality + PATO:0002432 + + spade-shaped + + + + + A shape that is in the form of a spade. + PATOC:WC + + + + + + + + + A surface feature shape marked by large amounts of relief, often with multiple ridges and grooves in close association. Topographically complex. + gkoutos + 2013-01-29T09:27:55Z + quality + PATO:0002433 + + sculpted surface + + + + + A surface feature shape marked by large amounts of relief, often with multiple ridges and grooves in close association. Topographically complex. + PATOC:AD + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity. + gkoutos + 2013-01-29T09:29:55Z + quality + PATO:0002434 + + + perpendicular to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity. + PATOC:WC + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer touching another entity along a border or with a projecting part. + gkoutos + 2013-01-29T09:31:12Z + abut + quality + PATO:0002435 + + + + abutting + + + + + A positional quality inhering in a bearer by virtue of the bearer touching another entity along a border or with a projecting part. + merriam-webster:merriam-webster + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's position being displaced from a reference point. + gkoutos + 2013-01-29T09:32:22Z + quality + PATO:0002436 + + + offset + + + + + A positional quality inhering in a bearer by virtue of the bearer's position being displaced from a reference point. + PATOC:AD + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being locked together or interconnected to another entity. + gkoutos + 2013-01-29T09:37:13Z + quality + PATO:0002437 + + + interlocked with + + + + + A structural quality inhering in a bearer by virtue of the bearer's being locked together or interconnected to another entity. + merriam-webster:merriam-webster + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being located or placed beneath the skin. + gkoutos + 2013-01-29T09:41:50Z + subcutaneous + quality + PATO:0002438 + + subdermal + + + + + A structural quality inhering in a bearer by virtue of the bearer's being located or placed beneath the skin. + thefreedictionary:thefreedictionary + + + + + + + + + An angular shape quality inhering in a bearer by virtue of the bearer's having two angles in its length giving the bearer the form of the letter W. + gkoutos + 2013-01-29T09:45:54Z + quality + PATO:0002439 + + w-shaped + + + + + An angular shape quality inhering in a bearer by virtue of the bearer's having two angles in its length giving the bearer the form of the letter W. + PATOC:WC + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the degree of the bearer's highly topographical with ridges, pits, rugosity or other surface structures. + gkoutos + 2013-01-29T10:57:42Z + quality + PATO:0002440 + + ornamentation + + + + + A surface feature shape quality inhering in a bearer by virtue of the degree of the bearer's highly topographical with ridges, pits, rugosity or other surface structures. + PATOC:GVG + + + + + + + + + A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures. + + gkoutos + 2013-01-29T10:59:42Z + quality + PATO:0002441 + + ornamented + + + + + A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures. + PATOC:AD + + + + + + + + + A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures. + + gkoutos + 2013-01-29T11:00:20Z + quality + PATO:0002442 + + unornamented + + + + + A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures. + PATOC:AD + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being located at the same level as another entity. + gkoutos + 2013-01-29T11:01:46Z + quality + PATO:0002443 + + + level with + + + + + A positional quality inhering in a bearer by virtue of the bearer's being located at the same level as another entity. + PATOC:NI + + + + + + + + + A composition quality inhering in a bearer by virtue of the bearer's being composed of or possessing inorganic material. + gkoutos + 2013-01-29T11:03:49Z + quality + PATO:0002444 + + mineralized + + + + + A composition quality inhering in a bearer by virtue of the bearer's being composed of or possessing inorganic material. + PATOC:WC + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being twisted or turned. + gkoutos + 2013-01-29T11:05:26Z + twisted + quality + PATO:0002445 + The word "torsion" has multiple different meanings in different context (e.g. the act of twisting or the morphology of the digestive tract in gastropods). This term refers purely to the resulting shape and is not to be used in the engineering and mechanics sense of torsion. +Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', but it is different in that something that is kinked has sharp twists or turns. + torsioned + + + + + A shape quality inhering in a bearer by virtue of the bearer's being twisted or turned. + freedictionary:freedictionary + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an anchor. + gkoutos + 2013-01-29T11:07:17Z + quality + PATO:0002446 + + anchor-shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an anchor. + PATOC:WC + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer being divided into four parts. + gkoutos + 2013-01-29T11:08:28Z + quality + PATO:0002447 + + quadripartite + + + + + A shape quality inhering in a bearer by virtue of the bearer being divided into four parts. + PATOC:WC + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being aligned or positioned towards another entity. + gkoutos + 2013-02-16T02:57:06Z + quality + PATO:0002448 + + + oriented towards + + + + + A quality inhering in a bearer by virtue of the bearer's being aligned or positioned towards another entity. + PATOC:WD + + + + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and mid-line surface of an organism relative to another entity. + gkoutos + 2013-02-16T03:00:46Z + quality + PATO:0002449 + + + posteromedial to + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and mid-line surface of an organism relative to another entity. + PATOC:WC + + + + + + + + + A hardness quality of giving significant resistance to pressure. + gkoutos + 2013-02-26T02:02:38Z + quality + PATO:0002450 + + firm + + + + + A hardness quality of giving significant resistance to pressure. + PATOC:CM + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting a phenotypic difference between males and females of the same species. + gkoutos + 2013-03-11T09:22:04Z + quality + PATO:0002451 + + sexually dimorphic + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting a phenotypic difference between males and females of the same species. + PATOC:WC + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed. + + gkoutos + 2013-04-08T08:43:31Z + quality + PATO:0002452 + + decondensed + + + + + A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed. + PATOC:JL + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer bring gradually worn away. + gkoutos + 2013-04-08T08:45:08Z + quality + PATO:0002453 + + eroding + + + + + A structural quality inhering in a bearer by virtue of the bearer bring gradually worn away. + PATOC:JL + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a carpel. + gkoutos + 2013-04-09T06:00:28Z + quality + PATO:0002454 + + carpel-like + + + + + A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a carpel. + PATO:JL + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's architecture bearing resemblence to a corymb type of inflorescence. + gkoutos + 2013-04-09T06:01:02Z + quality + PATO:0002455 + + corymb-like + + + + + A quality inhering in a bearer by virtue of the bearer's architecture bearing resemblence to a corymb type of inflorescence. + PATOC:JL + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of an inflorescence. + gkoutos + 2013-04-09T06:02:05Z + quality + PATO:0002456 + + inflorescence-like + + + + + A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of an inflorescence. + PATOC:JL + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a leaf. + gkoutos + 2013-04-09T06:02:58Z + quality + PATO:0002457 + + leaf-like + + + + + A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a leaf. + PATOC:JL + + + + + + + + + A quality inhering in a bearer by virtue of the bearer being thin and lacking outgrowths. + gkoutos + 2013-04-09T06:03:56Z + quality + PATO:0002458 + + pin-like + + + + + A quality inhering in a bearer by virtue of the bearer being thin and lacking outgrowths. + PATOC:JL + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a sepal, + gkoutos + 2013-04-09T06:04:36Z + quality + PATO:0002459 + + sepal-like + + + + + A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a sepal, + PATOC:JL + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer being smaller and contracted, expecially due to loss of moisture. + gkoutos + 2013-04-09T06:05:18Z + quality + PATO:0002460 + + shriveled + + + + + A structural quality inhering in a bearer by virtue of the bearer being smaller and contracted, expecially due to loss of moisture. + PATOC:JL + + + + + + + + + To bend or hang downwards due to loss of water + gkoutos + 2013-04-09T06:06:14Z + quality + PATO:0002461 + + wilty + + + + + + + + + A composition quality inhering in an bearer by virtue of the bearer's consisting of collagen. + gkoutos + 2013-09-15T11:34:15Z + quality + PATO:0002462 + + collagenous + + + + + A composition quality inhering in an bearer by virtue of the bearer's consisting of collagen. + PATOC:WD + + + + + + + + + A positional quality inhering in a bearer by virtue of some aspect of the bearer extending to the position of another entity. + gkoutos + 2013-09-15T11:41:00Z + quality + PATO:0002463 + + extends to + + + + + A positional quality inhering in a bearer by virtue of some aspect of the bearer extending to the position of another entity. + PATOC:WD + + + + + + + + + A positional quality inhering in a bearer by virtue of some aspect of the bearer extending past the position of another entity. + gkoutos + 2013-09-15T11:42:15Z + quality + PATO:0002464 + + extends beyond + + + + + A positional quality inhering in a bearer by virtue of some aspect of the bearer extending past the position of another entity. + PATOC:WD + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's resembling a prism. + gkoutos + 2013-09-15T11:44:03Z + quality + tent shaped + PATO:0002465 + + prism shaped + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer resembling a keyhole. + gkoutos + 2013-09-15T11:45:53Z + quality + PATO:0002466 + + keyhole shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer resembling a keyhole. + PATOC:WD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer resembling a thin narrow strip. + gkoutos + 2013-09-15T11:47:11Z + quality + PATO:0002467 + + lathlike + + + + + A shape quality inhering in a bearer by virtue of the bearer resembling a thin narrow strip. + PATOC:WD + + + + + + + + + A structure quality inhering in a bearer by virtue of the bearer's being capable of swelling or stretching. + gkoutos + 2013-09-15T11:48:26Z + quality + PATO:0002468 + + distensible + + + + + A structure quality inhering in a bearer by virtue of the bearer's being capable of swelling or stretching. + PATOC:WD + + + + + + + + + Structural quality inhereing in a bearer in which a joint has apposed bony surfaces united by fibrous tissue, permitting no movement; found only between bones. + gkoutos + 2013-09-15T11:55:50Z + quality + PATO:0002469 + + + sutured to + + + + + Structural quality inhereing in a bearer in which a joint has apposed bony surfaces united by fibrous tissue, permitting no movement; found only between bones. + PATOC:WD + + + + + + + + + A morphological quality between two bearers inhering that one bearer is subject to change the nature, function, or condition of itself to become the other. + gkoutos + 2013-09-15T12:01:57Z + quality + PATO:0002470 + + + transformed to + + + + + A morphological quality between two bearers inhering that one bearer is subject to change the nature, function, or condition of itself to become the other. + PATOC:LC + + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position. + + gkoutos + 2013-09-15T12:03:45Z + quality + PATO:0002471 + + increased velocity + + + + + A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position. + PATOC:NV + + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position. + + gkoutos + 2013-09-15T12:05:06Z + quality + PATO:0002472 + + decreased velocity + + + + + A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position. + PATOC:NV + + + + + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to spontaneously arise. + gkoutos + 2013-09-15T12:07:08Z + quality + PATO:0002473 + + + neoplastic, spontaneous + + + + + A disposition inhering in a tumour by virtue of the bearer's disposition to spontaneously arise. + PATOC:NV + + + + + + + + + A flavor quality inhering in a bearer by virtue of the bearer's having an acrid, sharp, or disagreeable flavor. + gkoutos + 2013-09-15T12:09:15Z + quality + PATO:0002474 + + bitter + + + + + A flavor quality inhering in a bearer by virtue of the bearer's having an acrid, sharp, or disagreeable flavor. + PATOC:LC + + + + + + + + + A position quality inhering in a bearer by virtue of the bearer's existing near the end of another entity. + gkoutos + 2013-09-15T12:17:41Z + quality + PATO:0002475 + + + subterminal + + + + + A position quality inhering in a bearer by virtue of the bearer's existing near the end of another entity. + PATOC:WD + + + + + + + + + A position quality inhering in a bearer by virtue of the bearer's forming the end of another entity. + gkoutos + 2013-09-15T12:18:08Z + quality + PATO:0002476 + + + terminal + + + + + A position quality inhering in a bearer by virtue of the bearer's forming the end of another entity. + PATOC:WD + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to breaks without significant deformation (strain) when subjected to stress. + gkoutos + 2013-09-15T12:25:03Z + quality + PATO:0002477 + + brittle + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to breaks without significant deformation (strain) when subjected to stress. + wikipedia:http://en.wikipedia.org/wiki/Brittleness + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented transversely relative to the long axis of the bearer. + gkoutos + 2013-09-15T12:29:15Z + quality + PATO:0002478 + + + + transversely striated + + + + + A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented transversely relative to the long axis of the bearer. + PATOC:DS + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented obliquely relative to the long axis of the bearer. + gkoutos + 2013-09-15T12:29:42Z + quality + PATO:0002479 + + + + obliquely striated + + + + + A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented obliquely relative to the long axis of the bearer. + PATOC:DS + + + + + + + + + A quality inhering in an bearer by virtue of the bearer's possessing only minor levels of ossification. + gkoutos + 2013-09-30T05:47:07Z + quality + PATO:0002480 + + poorly ossified + + + + + A quality inhering in an bearer by virtue of the bearer's possessing only minor levels of ossification. + PATOC:AD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a slanting direction or position : neither perpendicular nor parallel. + gkoutos + 2013-09-30T05:49:50Z + quality + PATO:0002481 + + oblique orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a slanting direction or position : neither perpendicular nor parallel. + merriam-wester:http://www.merriam-webster.com/dictionary/oblique + + + + + + + + + Shape quality inhering in a bearer by virtue of the bearer exhibiting a narrow and elongate opening. + gkoutos + 2013-09-30T05:51:39Z + quality + PATO:0002482 + + slit-like + + + + + Shape quality inhering in a bearer by virtue of the bearer exhibiting a narrow and elongate opening. + PATOC:WD + + + + + + + + + Positional quality in which an entity is located outside of another entity. + gkoutos + 2013-09-30T06:06:27Z + quality + PATO:0002483 + + + external to + + + + + Positional quality in which an entity is located outside of another entity. + PATOC:WD + + + + + + + + + An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of an inverted letter V. + gkoutos + 2013-10-10T03:55:44Z + chevron shaped + quality + PATO:0002484 + + inverted-V shaped + + + + + An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of an inverted letter V. + PATOC:WD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's possessing two sides that are at the same continuous distance relative to each other. + gkoutos + 2013-10-10T03:58:37Z + quality + PATO:0002485 + + parallel-sided + + + + + A shape quality inhering in a bearer by virtue of the bearer's possessing two sides that are at the same continuous distance relative to each other. + PATOC:WD + + + + + + + + + A quality inhering in a process by virtue of that process having two or more organisms as participants. + gkoutos + 2013-10-10T04:08:44Z + quality + PATO:0002486 + + multi-organismal process quality + + + + + A quality inhering in a process by virtue of that process having two or more organisms as participants. + PATOC:DS + + + + + + + + + A quality inhering in a process by virtue of that process having exactly one organism as a participant. + gkoutos + 2013-10-10T04:09:51Z + quality + PATO:0002487 + + single organismal process quality + + + + + A quality inhering in a process by virtue of that process having exactly one organism as a participant. + PATOC:DS + + + + + + + + + Overlap with quality inhering in a bearer by virtue of the bearer's being positioned over another entity so as to cover some portion of it. + gkoutos + 2013-10-10T04:12:22Z + quality + PATO:0002488 + + + overlapping + + + + + Overlap with quality inhering in a bearer by virtue of the bearer's being positioned over another entity so as to cover some portion of it. + PATOC:WD + + + + + + + + + Overlap with quality inhering in a bearer by virtue of the bearer's being positioned under another entity so as to be covered by some portion of it. + gkoutos + 2013-10-10T04:13:04Z + quality + PATO:0002489 + + + overlapped by + + + + + Overlap with quality inhering in a bearer by virtue of the bearer's being positioned under another entity so as to be covered by some portion of it. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteriorly. + gkoutos + 2013-10-10T05:11:26Z + anteriorly directly + quality + PATO:0002490 + + anterior orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteriorly. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally. + + gkoutos + 2013-10-10T05:12:15Z + anterodorsally directed + quality + PATO:0002491 + + anterodorsal orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterolaterally. + gkoutos + 2013-10-10T05:13:17Z + anterolaterally directed + quality + PATO:0002492 + + anterolateral orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterolaterally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteroventrally. + gkoutos + 2013-10-10T05:13:55Z + anteroventrally directed + quality + PATO:0002493 + + anteroventral orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteroventrally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distally. + + gkoutos + 2013-10-10T05:14:37Z + distally directed + quality + PATO:0002494 + + distal orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally. + + gkoutos + 2013-10-10T05:15:24Z + dorsally directed + quality + PATO:0002495 + + dorsal orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsolaterally. + gkoutos + 2013-10-10T05:16:04Z + dorsolaterally directed + quality + PATO:0002496 + + dorsolateral orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsolaterally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed laterally. + gkoutos + 2013-10-10T05:16:45Z + laterally directed + quality + PATO:0002497 + + lateral orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed laterally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed medially. + gkoutos + 2013-10-10T05:17:30Z + medially directed + quality + PATO:0002498 + + medial orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed medially. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteriorly. + gkoutos + 2013-10-10T05:18:21Z + posteriorly directed + quality + PATO:0002499 + + posterior orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteriorly. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrolaterally. + gkoutos + 2013-10-10T05:19:16Z + ventrolaterally directed + quality + PATO:0002500 + + ventrolaterally orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrolaterally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrally. + gkoutos + 2013-10-10T05:19:22Z + ventrally directed + quality + PATO:0002501 + + ventral orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed transversely. + gkoutos + 2013-10-10T05:19:25Z + transversely oriented + quality + PATO:0002502 + + transverse orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed transversely. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterolaterally. + gkoutos + 2013-10-10T05:19:28Z + posterolaterally directed + quality + PATO:0002503 + + posterolateral orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterolaterally. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally. + + gkoutos + 2013-10-10T05:19:36Z + posterodorsally directed + quality + PATO:0002504 + + posterodorsal orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally. + PATOC:WD + + + + + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus. + gkoutos + 2013-10-21T05:44:34Z + quality + PATO:0002505 + + + nucleated + + + + + A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus. + PATOC:GVG + + + + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's not having undulating edges forming lobes. + gkoutos + 2013-10-25T04:42:40Z + quality + PATO:0002506 + + alobate + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's not having undulating edges forming lobes. + PATOC:DOS + + + + + + + + + A composition quality inhering in a bearer by virtue of the bearer's consisting of keratin. + segerdel + 2014-02-04T12:38:14Z + quality + PATO:0002507 + + keratinous + + + + + A composition quality inhering in a bearer by virtue of the bearer's consisting of keratin. + PATOC:EJS + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer being hidden from view. + segerdel + 2014-02-04T01:30:21Z + quality + PATO:0002508 + + concealed + + + + + A positional quality inhering in a bearer by virtue of the bearer being hidden from view. + PATOC:EJS + + + + + + + + + A 2-D shape quality inhering in a bearer by virtue of the bearer's having six angles and six sides. + segerdel + 2014-02-04T01:50:05Z + quality + PATO:0002509 + + hexagonal + + + + + A 2-D shape quality inhering in a bearer by virtue of the bearer's having six angles and six sides. + Merriam-Webster:hexagonal + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer being divided into multiple parts. + segerdel + 2014-02-06T01:15:28Z + quality + PATO:0002510 + + multipartite + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer being divided into multiple parts. + PATOC:EJS + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a cane. + segerdel + 2014-02-06T02:04:35Z + quality + cane-shaped + PATO:0002511 + + cane-like + + + + + A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a cane. + PATOC:EJS + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer flowing or coming together with another entity. + segerdel + 2014-02-06T02:28:39Z + quality + PATO:0002512 + + + confluent with + + + + + A positional quality inhering in a bearer by virtue of the bearer flowing or coming together with another entity. + Merriam-Webster:confluent + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's having a slanting direction (neither perpendicular nor parallel) relative to another entity. + segerdel + 2014-02-06T02:54:16Z + quality + PATO:0002513 + + + oblique to + + + + + A positional quality inhering in a bearer by virtue of the bearer's having a slanting direction (neither perpendicular nor parallel) relative to another entity. + PATOC:EJS + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteromedially. + segerdel + 2014-02-07T12:59:10Z + medioanterior orientation + quality + PATO:0002514 + + anteromedial orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteromedially. + PATOC:EJS + + + + + + + + + An elevation quality inhering in a bearer by virtue the bearer's being in a high position relative to another entity. + segerdel + 2014-02-07T01:12:48Z + quality + PATO:0002515 + + + increased elevation relative to + + + + + An elevation quality inhering in a bearer by virtue the bearer's being in a high position relative to another entity. + PATOC:EJS + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer being hidden from view or covered by another entity. + segerdel + 2014-02-10T01:13:53Z + quality + PATO:0002516 + + + concealed by + + + + + A positional quality inhering in a bearer by virtue of the bearer being hidden from view or covered by another entity. + PATOC:EJS + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a saddle. + segerdel + 2014-02-10T01:23:13Z + quality + PATO:0002517 + + saddle-shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a saddle. + PATOC:EJS + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer being level or even with another surface. + segerdel + 2014-02-10T01:26:50Z + quality + PATO:0002518 + + flush + + + + + A positional quality inhering in a bearer by virtue of the bearer being level or even with another surface. + WordReference:flush + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having an open, latticed, or porous structure; used especially of bone. + segerdel + 2014-02-10T01:33:14Z + quality + PATO:0002519 + + cancellous + + + + + A structural quality inhering in a bearer by virtue of the bearer's having an open, latticed, or porous structure; used especially of bone. + TheFreeDictionary:cancellous + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer being shaped like a scute or an osteoderm. + segerdel + 2014-02-10T01:37:47Z + quality + PATO:0002520 + + scute-like + + + + + A shape quality inhering in a bearer by virtue of the bearer being shaped like a scute or an osteoderm. + PATOC:EJS + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a funnel. + segerdel + 2014-02-10T01:40:05Z + quality + PATO:0002521 + + funnel-shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a funnel. + PATOC:EJS + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer having an elongate structure, similar to a ridge, that extends longitudinally along an anatomical entity. + segerdel + 2014-02-10T01:46:38Z + quality + PATO:0002522 + + keel-shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer having an elongate structure, similar to a ridge, that extends longitudinally along an anatomical entity. + PATOC:EJS + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity and to the horizon. + segerdel + 2014-02-10T02:25:42Z + quality + PATO:0002523 + + + vertical to + + + + + A positional quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity and to the horizon. + PATOC:EJS + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed mesiolaterally. + segerdel + 2014-02-10T02:37:42Z + quality + PATO:0002524 + + mesiolateral orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed mesiolaterally. + PATOC:EJS + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer being in a position that produces a separation in, or acting to separate, another entity. + segerdel + 2014-02-10T02:48:15Z + quality + PATO:0002525 + + + separating + + + + + A structural quality inhering in a bearer by virtue of the bearer being in a position that produces a separation in, or acting to separate, another entity. + PATOC:EJS + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally. + + segerdel + 2014-03-11T11:28:39Z + antero-distal orientation + quality + PATO:0002526 + anterodistal orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally. + PATOC:EJS + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally. + + segerdel + 2014-03-11T11:29:22Z + postero-distal orientation + quality + PATO:0002527 + posterodistal orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally. + PATOC:EJS + + + + + + + + PATO:0002628 + quality + PATO:0002528 + obsoleted because the ID was accidentally reused + obsolete borderline intensity + true + + + + + + + + PATO:0002629 + quality + PATO:0002529 + obsoleted because the ID was accidentally reused + obsolete profound intensity + true + + + + + + + + PATO:0002630 + quality + PATO:0002530 + obsoleted because the ID was accidentally reused + obsolete episodic + true + + + + + + + + PATO:0002631 + quality + PATO:0002531 + obsoleted because the ID was accidentally reused + obsolete refractory + true + + + + + + + + PATO:0002632 + quality + PATO:0002532 + obsoleted because the ID was accidentally reused + obsolete secondary + true + + + + + + + + + A multipartite quality inhering in a bearer by virtue of the bearer being divided into two parts. + wasila.dahdul + 2014-08-12T11:12:13Z + quality + PATO:0002533 + + bipartite + + + + + A multipartite quality inhering in a bearer by virtue of the bearer being divided into two parts. + PATOC:WD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped like a plowshare. + wasila.dahdul + 2014-08-12T11:23:12Z + Image:http://2.bp.blogspot.com/_TbkIC-eqFNM/S66IJ3omNWI/AAAAAAAAFSk/pzThLJPvYZw/s1600/ard-detail.gif + plow-share shaped + quality + PATO:0002534 + + plowshare shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's being shaped like a plowshare. + PATOC:WD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a short and stout cylindrical shape. + wasila.dahdul + 2014-08-12T11:30:08Z + quality + PATO:0002535 + + peg-like + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a short and stout cylindrical shape. + PATOC:WD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape like a boomerang, with two arms connected at an angle. + wasila.dahdul + 2014-08-12T11:32:16Z + quality + PATO:0002536 + + boomerang shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape like a boomerang, with two arms connected at an angle. + PATOC:WD + + + + + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a shape not quite ovoid. approximately ovoid. + wasila.dahdul + 2014-08-12T11:51:38Z + quality + PATO:0002537 + + subovoid + + + + + A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a shape not quite ovoid. approximately ovoid. + merriam-webster:http://www.merriam-webster.com/dictionary/subovoid + + + + + + + + + A shape quality that obtains by virtue of the bearer being concave on one side and convex on the other. + wasila.dahdul + 2014-08-12T11:56:13Z + concavoconvex + quality + PATO:0002538 + + concavo-convex + + + + + A shape quality that obtains by virtue of the bearer being concave on one side and convex on the other. + merriam-webster:http://www.merriam-webster.com/dictionary/concavo-convex + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape like a ring (a circular shape enclosing a space). + wasila.dahdul + 2014-08-12T12:01:56Z + quality + PATO:0002539 + + ring shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape like a ring (a circular shape enclosing a space). + PATOC:WD + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's possessing a small, spike-like shape. + wasila.dahdul + 2014-08-12T12:07:44Z + quality + PATO:0002540 + + spur shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's possessing a small, spike-like shape. + PATOC:WD + + + + + + + + + Pertaining to the ability or tendency of an organism or cell to maintain internal equilibrium by adjusting its physiological processes. + haendel + 2014-12-01T16:07:28Z + quality + PATO:0002541 + homeostatic + + + + + Pertaining to the ability or tendency of an organism or cell to maintain internal equilibrium by adjusting its physiological processes. + GO:0042592 + + + + + + + + + An intensity which is borderline in it its effect or force as compared to baseline or normal. + haendel + 2014-05-26T06:42:21Z + quality + PATO:0002628 + + borderline intensity + + + + + + + + + An intensity which is characterized by being very severe. + haendel + 2014-05-26T06:44:11Z + quality + PATO:0002629 + + profound intensity + + + + + An intensity which is characterized by being very severe. + PATO:MAH + + + + + + + + + An occurrence quality inhering in a bearer by virtue of the bearer's having a course that occurs occasionally. + haendel + 2014-05-26T06:50:16Z + quality + PATO:0002630 + + episodic + + + + + An occurrence quality inhering in a bearer by virtue of the bearer's having a course that occurs occasionally. + PATO:MAH + + + + + + + + + An occurrence of a process during which time there is an inability to change the course, extent, or repetition of the process. + haendel + 2014-05-26T13:09:29Z + quality + PATO:0002631 + + refractory + + + + + An occurrence of a process during which time there is an inability to change the course, extent, or repetition of the process. + PATO:MAH + + + + + + + + + A quality in which the effect or outcome is not primary or the focus of the observation. + haendel + 2014-05-26T13:17:45Z + quality + PATO:0002632 + + secondary + + + + + A quality in which the effect or outcome is not primary or the focus of the observation. + PATO:MAH + + + + + + + + + A 3-D shape that is half of a sphere. + wasila.dahdul + 2014-09-09T12:25:08Z + quality + PATO:0005000 + + hemispheroid + + + + + A 3-D shape that is half of a sphere. + PATOC:WD + + + + + + + + + + + + + + + A variability quality inhering in the bearer by virtue of the bearer having a variable number or count of an entity. + wasila.dahdul + 2014-09-09T12:27:33Z + quality + variable number + PATO:0005001 + + variability of count + + + + + A variability quality inhering in the bearer by virtue of the bearer having a variable number or count of an entity. + PATOC:WD + + + + + + + + + Having the shape of a pear; tapering near the top and bulging toward the base or bottom. From thefreedictionary.com + wasila.dahdul + 2014-09-09T12:30:02Z + quality + PATO:0005002 + + pear shaped + + + + + Having the shape of a pear; tapering near the top and bulging toward the base or bottom. From thefreedictionary.com + PATOC:WD + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's resembling the form of a paddle. + wasila.dahdul + 2014-09-09T12:34:45Z + quality + PATO:0005003 + + paddle shaped + + + + + A quality inhering in a bearer by virtue of the bearer's resembling the form of a paddle. + PATOC:WD + + + + + + + + + A shape that is almost an ellipse. + wasila.dahdul + 2014-09-09T12:36:15Z + quality + PATO:0005004 + + subelliptical + + + + + A shape that is almost an ellipse. + PATOC:WD + + + + + + + + + Shape quality inhering in a bearer expanding outward, or having parts expanding outward, from a center point. + wasila.dahdul + 2014-09-09T12:37:27Z + quality + PATO:0005005 + + radiating + + + + + Shape quality inhering in a bearer expanding outward, or having parts expanding outward, from a center point. + PATOC:WD + + + + + + + + + A morphology quality inhering in a bearer by virtue of the bearer's being morphologically distinguishable from another entity. + wasila.dahdul + 2014-09-09T12:40:57Z + distinct from + quality + PATO:0005006 + + + differentiated from + + + + + A morphology quality inhering in a bearer by virtue of the bearer's being morphologically distinguishable from another entity. + PATOC:WD + + + + + + + + + A 3-D shape inhering in a bearer by virtue of the bearer's having dentition characterized by high-crowned teeth and enamel which extends far past the gum line, which provides extra material for wear and tear. + wasila.dahdul + 2014-09-09T12:58:01Z + quality + PATO:0005007 + + Need to include axiom: hypsodont inheres_in some ('tooth crown' and bearer_of 'increased +height'). + hypsodont + + + + + A 3-D shape inhering in a bearer by virtue of the bearer's having dentition characterized by high-crowned teeth and enamel which extends far past the gum line, which provides extra material for wear and tear. + DOI:10.1111/j.1469-185X.2011.00176.x + + + + + + + + + A 3-D shape inhering in a bearer by virtue of the bearer's having dentition characterized by low-crowned teeth. Human teeth are brachydont. + wasila.dahdul + 2014-09-09T12:59:35Z + quality + PATO:0005008 + + Need to include axiom: brachydont inheres_in some ('tooth crown' and bearer_of 'decreased +height'). + brachydont + + + + + A 3-D shape inhering in a bearer by virtue of the bearer's having dentition characterized by low-crowned teeth. Human teeth are brachydont. + DOI:10.1111/j.1469-185X.2011.00176.x + + + + + + + + + A 3-D shape inhering in a bearer by virtue of the bearer's having an entity in the form of a molar tooth. + wasila.dahdul + 2014-09-09T13:03:00Z + quality + PATO:0005009 + + molariform + + + + + A 3-D shape inhering in a bearer by virtue of the bearer's having an entity in the form of a molar tooth. + PATOC:WD + + + + + + + + + A branched quality inhering in a bearer by virtue of the bearer's having many fine filaments or branches that give a feathery appearance: for example, resembling a feather. + wasila.dahdul + 2014-09-25T15:03:17Z + quality + PATO:0005010 + + plumose + + + + + A branched quality inhering in a bearer by virtue of the bearer's having many fine filaments or branches that give a feathery appearance: for example, resembling a feather. + www.oxforddictionaries.com:http://www.oxforddictionaries.com/us/definition/american_english/plumose + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer possessing an uninterrupted or unbroken connection or spatial distribution relative to the position of another entity. + wasila.dahdul + 2014-09-25T15:07:34Z + quality + PATO:0005011 + + + continuous with + + + + + A positional quality inhering in a bearer by virtue of the bearer possessing an uninterrupted or unbroken connection or spatial distribution relative to the position of another entity. + PATOC:WD + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts. + + wasila.dahdul + 2014-09-25T15:11:47Z + quality + PATO:0005012 + + complete structure + + + + + A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts. + PATOC:WD + + + + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities. + + wasila.dahdul + 2014-09-25T15:12:35Z + quality + PATO:0005013 + + incomplete structure + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities. + PATOC:WD + + + + + + + + + A spheroid shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, spherical. + wasila.dahdul + 2014-09-25T15:16:25Z + quality + PATO:0005014 + + subspherical + + + + + A spheroid shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, spherical. + PATOC:WD + + + + + + + + + A size quality inhering in an entity or set of entities in which size increases or decreases along the extent of the entity or set. + wasila.dahdul + 2014-09-25T15:17:51Z + gradient of size + quality + PATO:0005015 + + tapered size + + + + + A size quality inhering in an entity or set of entities in which size increases or decreases along the extent of the entity or set. + PATOC:WD + + + + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being enclosed on all sides by another entity. + wasila.dahdul + 2014-09-25T15:20:55Z + enclosed by + quality + PATO:0005016 + + + surrounded by + + + + + A positional quality inhering in a bearer by virtue of the bearer's being enclosed on all sides by another entity. + PATOC:WD + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being compressed from the side facing the lips to the side facing the tongue. + wasila.dahdul + 2014-10-02T11:52:09Z + quality + PATO:0005017 + + labiolingually compressed + + + + + A quality inhering in a bearer by virtue of the bearer's being compressed from the side facing the lips to the side facing the tongue. + PATOC:WD + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being compressed from the side facing the midline of the jaw to the side opposite the midline. + wasila.dahdul + 2014-10-02T11:53:52Z + quality + PATO:0005018 + + mesiodistally compressed + + + + + A quality inhering in a bearer by virtue of the bearer's being compressed from the side facing the midline of the jaw to the side opposite the midline. + PATOC:WD + + + + + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the tongue. + wasila.dahdul + 2014-10-02T12:01:16Z + quality + PATO:0005019 + + curved lingually + + + + + A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the tongue. + PATOC:WD + + + + + + + + + A shape quality inhering on a bearer by virtue of a bearer's shape lacking in pattern or uniformity; for example, it may have sides of different lengths, different curvatures, or unequal angles. + wasila.dahdul + 2014-10-03T10:23:17Z + quality + PATO:0005020 + + irregularly shaped + + + + + A shape quality inhering on a bearer by virtue of a bearer's shape lacking in pattern or uniformity; for example, it may have sides of different lengths, different curvatures, or unequal angles. + PATOC:WD + + + + + + + + + Cuspidate quality inhering in a bearer by virtue of the bearer's possessing a single cusp. + wasila.dahdul + 2014-10-17T14:14:04Z + quality + PATO:0005021 + + unicuspidate + + + + + Cuspidate quality inhering in a bearer by virtue of the bearer's possessing a single cusp. + PATOC:WD + + + + + + + + + A diameter that remains constant throughout the extent of an entity. + wasila.dahdul + 2014-10-17T14:15:59Z + quality + PATO:0005022 + + uniform diameter + + + + + A diameter that remains constant throughout the extent of an entity. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is in the parasagittal plane. + wasila.dahdul + 2014-10-17T14:21:30Z + quality + PATO:0005023 + + parasagittal orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is in the parasagittal plane. + PATOC:WD + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed along the longitudinal or anterior-posterior axis. + wasila.dahdul + 2014-10-17T14:24:19Z + quality + PATO:0005024 + + longitudinal orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed along the longitudinal or anterior-posterior axis. + PATOC:WD + + + + + + + + + A structural quality inhering in the bearer by virtue of the bearer consisting of a single, maximally connected structure. + davidos + 2014-12-12T08:41:11Z + quality + PATO:0010000 + What counts as maximally connected may be relative to some specification of granularity. + maximally connected + + + + + A structural quality inhering in the bearer by virtue of the bearer consisting of a single, maximally connected structure. + GOC:dos + + + + + + + + + A structural quality inhering in the bearer by virtue of the bearer consisting of multiple structures lacking any physical connection to each other. + davidos + 2014-12-12T08:43:17Z + quality + PATO:0010001 + disconnected + + + + + A structural quality inhering in the bearer by virtue of the bearer consisting of multiple structures lacking any physical connection to each other. + GOC:dos + + + + + + + + + The velocity of spatial propagation of a process. Examples include the velocity of propagation of an action potential along an axon. + dos + 2019-07-18T18:24:15Z + quality + PATO:0010002 + propagation velocity + + + + + The velocity of spatial propagation of a process. Examples include the velocity of propagation of an action potential along an axon. + orcid:0000-0002-7073-9172 + + + + + + + + + + A propagation velocity that is higher than normal. + dos + 2019-07-18T18:24:25Z + quality + PATO:0010003 + increased propagation velocity + + + + + A propagation velocity that is higher than normal. + orcid:0000-0002-7073-9172 + + + + + + + + + + A propagation velocity that is lower than normal. + dos + 2019-07-18T18:24:36Z + quality + PATO:0010004 + decreased propagation velocity + + + + + A propagation velocity that is lower than normal. + orcid:0000-0002-7073-9172 + + + + + + + + + A physical quality of a process that is its spatial distribution. For example, bone mineralization follows stereotypical spatial distribution patterns during development, which may be altered in some phenotypes. + dos + 2019-07-18T18:49:08Z + quality + PATO:0010005 + + spatial distribution of a process + + + + + A physical quality of a process that is its spatial distribution. For example, bone mineralization follows stereotypical spatial distribution patterns during development, which may be altered in some phenotypes. + orcid:0000-0002-7073-9172 + + + + + + + + + + Absence due to a degenerative process. + cjm + quality + PATO:0015001 + + + absence due to degeneration + + + + + Absence due to a degenerative process. + PATOC:PortlandMeetingFeb2015 + + + + + + + + + The ability of a process to produce its output. + cjm + quality + PATO:0015002 + + process efficacy + + + + + The ability of a process to produce its output. + PATOC:PortlandMeetingFeb2015 + + + + + + + + + + A decrease in the ability of a process to produce its output. + + cjm + quality + PATO:0015003 + + decreased efficacy + + + + + A decrease in the ability of a process to produce its output. + PATOC:PortlandMeetingFeb2015 + + + + + + + + + + A increase in the ability of a process to produce its output. + + cjm + quality + PATO:0015004 + + increased efficacy + + + + + A increase in the ability of a process to produce its output. + PATOC:PortlandMeetingFeb2015 + + + + + + + + + + + + + + + + + + + + + Slender and spirally coiled. + tendrilled + quality + tendril-like + tendril-shaped + PATO:0015005 + + tendrilous + + + + + Slender and spirally coiled. + https://en.wiktionary.org/wiki/tendril + + + + + + + + + A quality inhering in a structure by virtue of it consisting of many of repeated, similar or identical subunits, arranged in some orderly array. + quality + PATO:0015006 + + A complete coverage of this domain would subclasses homopolymeric, copolymeric, crystalline. + polymeric + + + + + A quality inhering in a structure by virtue of it consisting of many of repeated, similar or identical subunits, arranged in some orderly array. + GOC:DOS + https://github.com/pato-ontology/pato/issues/78 + + + + + + + + + A quality inhering in a bearer by virtue of the degree to which the bearers stands out or projects beyond a surface or line. + quality + PATO:0015007 + + prominence + + + + + A quality inhering in a bearer by virtue of the degree to which the bearers stands out or projects beyond a surface or line. + GOC:CJM + + + + + + + + + A quality inhering in a bearer by virtue of the extent to which the bearer is capable of being stretched or swollen. + quality + PATO:0015008 + + distensibility + + + + + A quality inhering in a bearer by virtue of the extent to which the bearer is capable of being stretched or swollen. + GOC:CJM + + + + + + + + + A quality inhering in air by virtue of the partial pressure exerted by the bearer's water vapour content. + quality + PATO:0015009 + + humidity + + + + + A quality inhering in air by virtue of the partial pressure exerted by the bearer's water vapour content. + https://github.com/pato-ontology/pato/issues/90 + + + + + + + + + + An increase in humidity. + + quality + humid + PATO:0015010 + + increased humidity + + + + + An increase in humidity. + https://github.com/pato-ontology/pato/issues/90 + + + + + + + + + + An decrease in humidity. + + quality + PATO:0015011 + + decreased humidity + + + + + An decrease in humidity. + https://github.com/pato-ontology/pato/issues/90 + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of roughly equal proportions of positively and negatively charged particles, having neither a defined volume nor defined shape, having internal magnetic fields, and being electrically conductive. + quality + PATO:0015012 + + quality of a plasma + + + + + A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of roughly equal proportions of positively and negatively charged particles, having neither a defined volume nor defined shape, having internal magnetic fields, and being electrically conductive. + https://github.com/pato-ontology/pato/issues/88 + + + + + + + + + The degree to which the bearer is exposed to visible light. + quality + PATO:0015013 + + degree of illumination + + + + + The degree to which the bearer is exposed to visible light. + https://github.com/pato-ontology/pato/issues/89 + + + + + + + + + + An increase in illumination. + + quality + illuminated + PATO:0015014 + + increased degree of illumination + + + + + An increase in illumination. + https://github.com/pato-ontology/pato/issues/89 + + + + + + + + + + An decrease in illumination. + + quality + PATO:0015015 + + decreased degree of illumination + + + + + An decrease in illumination. + https://github.com/pato-ontology/pato/issues/89 + + + + + + + + + Having a shape or form that resembles a step of a stairway (e.g., a ledge or offset margin). + quality + PATO:0015016 + + stepped + + + + + Having a shape or form that resembles a step of a stairway (e.g., a ledge or offset margin). + http://www.thefreedictionary.com/stepped + https://github.com/pato-ontology/pato/issues/82 + + + + + + + + + A physical quality inhering in an entity by virtue of a portion of the bearer's molecular or polymolecular constituents present in one phase being dispersed in a portion of the bearer's constituents present in another phase. + quality + PATO:0015017 + + quality of a colloid + + + + + A physical quality inhering in an entity by virtue of a portion of the bearer's molecular or polymolecular constituents present in one phase being dispersed in a portion of the bearer's constituents present in another phase. + ENVO:pb + https://github.com/pato-ontology/pato/issues/91 + https://goldbook.iupac.org/html/C/C01172.html + + + + + + + + + A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being suspended in a gas. + quality + PATO:0015018 + + quality of an aerosol + + + + + A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being suspended in a gas. + ENVO:pb + https://github.com/pato-ontology/pato/issues/91 + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter C. + quality + PATO:0015019 + + C-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter C. + github:mah11 + https://github.com/pato-ontology/pato/issues/96 + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter J. + quality + PATO:0015020 + + J-shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter J. + github:mah11 + https://github.com/pato-ontology/pato/issues/96 + + + + + + + + + The propensity of a material to undergo combustion. Combustion encompasses smouldering and flaming combustion. Combustibility is usually applied to solids. + quality + PATO:0015021 + + combustibility + + + + + The propensity of a material to undergo combustion. Combustion encompasses smouldering and flaming combustion. Combustibility is usually applied to solids. + https://en.wikipedia.org/wiki/Combustibility + https://github.com/EnvironmentOntology/envo/issues/384 + + + + + + + + + + An increase in combustibility. + + combustible + quality + PATO:0015022 + + increased combustibility + + + + + + + + + + An decrease in combustibility. + + quality + noncombustible + PATO:0015023 + + decreased combustibility + + + + + + + + + + An increase in porosity. + quality + PATO:0015024 + + increased porosity + + + + + An increase in porosity. + https://github.com/pato-ontology/pato/issues/110 + + + + + + + + + + An decrease in porosity. + + quality + PATO:0015025 + + decreased porosity + + + + + An decrease in porosity. + https://github.com/pato-ontology/pato/issues/110 + + + + + + + + + quality, state, or degree of being stable. + quality + PATO:0015026 + + + stability + + + + + quality, state, or degree of being stable. + https://github.com/pato-ontology/pato/issues/113 + + + + + + + + + + An increase in stability. + quality + PATO:0015027 + + + increased stability + + + + + An increase in stability. + https://github.com/pato-ontology/pato/issues/113 + + + + + + + + + + A decrease in stability. + + quality + PATO:0015028 + + + decreased stability + + + + + A decrease in stability. + https://github.com/pato-ontology/pato/issues/113 + + + + + + + + + A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being transiently dispersed in a solid, liquid, or gas before settling due to gravity or centrifugal forces. + quality + PATO:0015029 + + quality of a suspension + + + + + A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being transiently dispersed in a solid, liquid, or gas before settling due to gravity or centrifugal forces. + ENVO:pb + https://github.com/pato-ontology/pato/issues/91 + + + + + + + + + A shape that ineres in a bearer by virtue of the bearer's mass being distributed in a feather-like fashion. + feather-shaped + plumed + quality + PATO:0015030 + + plume-shaped + + + + + A shape that ineres in a bearer by virtue of the bearer's mass being distributed in a feather-like fashion. + https://github.com/pato-ontology/pato/issues/122 + + + + + + + + + A biological sex quality inhering in an individual based upon genotypic composition of sex chromosomes. + mah + quality + PATO:0020000 + Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, we have XY, XX, though abnormal XXY, X0, XYY, and other combinations are possible. + genotypic sex + + + + + A biological sex quality inhering in an individual based upon genotypic composition of sex chromosomes. + PATOC:MAH + + + + + + + + + A biological sex quality inhering in an individual based upon genotypic composition that confers the capability for an organism to differentiate male gonads. + mah + quality + PATO:0020001 + Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XY, though abnormal XXY and XYY would also result in a male phenotypic outcome. + male genotypic sex + + + + + A biological sex quality inhering in an individual based upon genotypic composition that confers the capability for an organism to differentiate male gonads. + PATOC:MAH + + + + + + + + + A biological sex quality inhering in an individual or a population based upon genotypic composition that confers the capability for an organism to differentiate female gonads. + mah + quality + PATO:0020002 + Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XX, though abnormal X0 and XXX would also result in a female phenotypic outcome. + female genotypic sex + + + + + A biological sex quality inhering in an individual or a population based upon genotypic composition that confers the capability for an organism to differentiate female gonads. + PATOC:MAH + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be used as a safe means of hydration. + pbuttigieg + 2015-09-01T16:16:44Z + drinkability + quality + PATO:0025000 + potability + + + + + A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be used as a safe means of hydration. + Wikipedia:https://en.wikipedia.org/wiki/Drinking_water + + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration. + + pbuttigieg + 2015-09-01T16:18:57Z + undrinkable + quality + PATO:0025001 + non-potable + + + + + A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration. + Wikipedia:https://en.wikipedia.org/wiki/Drinking_water + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration. + + pbuttigieg + 2015-09-01T16:19:02Z + drinkable + quality + PATO:0025002 + potable + + + + + A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration. + Wikipedia:https://en.wikipedia.org/wiki/Drinking_water + + + + + + + + + A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some or all of what are normally posterior structures. + segerdel + quality + PATO:0030000 + anterioralized + + + + + A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some or all of what are normally posterior structures. + PATOC:EJS + + + + + + + + + A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally dorsal structures and missing some or all of what are normally ventral structures. + segerdel + quality + PATO:0030001 + dorsalized + + + + + A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally dorsal structures and missing some or all of what are normally ventral structures. + PATOC:EJS + + + + + + + + + A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally posterior structures and missing some or all of what are normally anterior structures. + segerdel + quality + PATO:0030002 + posterioralized + + + + + A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally posterior structures and missing some or all of what are normally anterior structures. + PATOC:EJS + + + + + + + + + A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally ventral structures and missing some or all of what are normally dorsal structures. + segerdel + quality + PATO:0030003 + ventralized + + + + + A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally ventral structures and missing some or all of what are normally dorsal structures. + PATOC:EJS + + + + + + + + + An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some but not all of what are normally posterior structures. + segerdel + quality + PATO:0030004 + partially anterioralized + + + + + An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some but not all of what are normally posterior structures. + PATOC:EJS + + + + + + + + + A dorsalized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally dorsal structures and missing some but not all of what are normally ventral structures. + segerdel + quality + PATO:0030005 + partially dorsalized + + + + + A dorsalized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally dorsal structures and missing some but not all of what are normally ventral structures. + PATOC:EJS + + + + + + + + + A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally posterior structures and missing some but not all of what are normally anterior structures. + segerdel + quality + PATO:0030006 + partially posterioralized + + + + + A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally posterior structures and missing some but not all of what are normally anterior structures. + PATOC:EJS + + + + + + + + + A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally ventral structures and missing some but not all of what are normally dorsal structures. + segerdel + quality + PATO:0030007 + partially ventralized + + + + + A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally ventral structures and missing some but not all of what are normally dorsal structures. + PATOC:EJS + + + + + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being abnormally placed or arranged. + + 2018-05-21T22:44:38Z + quality + PATO:0040000 + heterotaxic + + + + + An oriented quality inhering in a bearer by virtue of the bearer's being abnormally placed or arranged. + http://medical-dictionary.thefreedictionary.com/heterotaxic + + + + + + + + + Shaped like a ring + + 2018-05-24T03:56:53Z + annular + quality + PATO:0040001 + ring-shaped + + + + + Shaped like a ring + https://orcid.org/0000-0002-6601-2165 + + + + + + + + + A positional quality inhering in a bearer by virtue of some aspect of that bearer beginning from a position on another entity. + + 2018-05-24T04:10:53Z + quality + PATO:0040002 + + originates from + + + + + + + + + The ability of a pathogen to produce an infectious disease or disorder in an another organism. + + 2018-08-02T04:24:52Z + quality + PATO:0040003 + pathogenicity + + + + + The ability of a pathogen to produce an infectious disease or disorder in an another organism. + https://orcid.org/0000-0001-8941-3984 + + + + + + + + + A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness. + + 2018-08-02T04:39:30Z + quality + PATO:0040004 + plush + + + + + A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness. + https://orcid.org/0000-0001-5208-3432 + https://orcid.org/0000-0003-4606-0597 + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally. + + 2018-11-12T22:54:16Z + posteroventrally oriented + quality + PATO:0040005 + posteroventral orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown. + + 2018-11-12T18:09:59Z + quality + PATO:0040006 + crown like + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell. + + 2018-11-12T18:12:47Z + quality + PATO:0040007 + shell shaped + + + + + A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band. + + 2018-11-12T18:15:10Z + quality + PATO:0040008 + fringed + + + + + A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band. + https://orcid.org/0000-0003-3162-7490 + https://www.merriam-webster.com/dictionary/fringe + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl. + + 2018-11-12T18:17:01Z + quality + PATO:0040009 + bowl shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + Mobility relative to a second entity. + + 2018-11-12T18:20:08Z + quality + PATO:0040010 + For example, distinct anteroposterior mobility of palatine relative to mesethmoid. + mobile relative to + + + + + Mobility relative to a second entity. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + Immobility relative to a second entity. + + 2018-11-12T18:21:07Z + quality + PATO:0040011 + For example: distinct anteroposterior immobility of palatine relative to mesethmoid. + immobile relative to + + + + + Immobility relative to a second entity. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + A shape that is in the form of a plug, being tube-like and expanded on one end. + + 2018-11-12T18:24:41Z + plug like + quality + PATO:0040012 + plug shaped + + + + + A shape that is in the form of a plug, being tube-like and expanded on one end. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially. + + 2018-11-12T18:27:57Z + dorsomedially directed + quality + PATO:0040013 + dorsomedial orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + A shape that is in the form of a narrow strip encircling an object. + + 2018-11-12T18:31:51Z + band like + band-like + strip like + strip-like + quality + PATO:0040014 + band shaped + + + + + A shape that is in the form of a narrow strip encircling an object. + https://orcid.org/0000-0003-3162-7490 + https://www.merriam-webster.com/dictionary/band + + + + + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling that of a trough, being narrow, long, and boxlike in shape. + + 2018-11-12T18:35:51Z + trough like + trough-like + trough-shaped + quality + PATO:0040015 + trough shaped + + + + + A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling that of a trough, being narrow, long, and boxlike in shape. + http://www.dictionary.com/browse/trough + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides. + + 2018-11-12T18:39:48Z + quality + PATO:0040016 + pentagonal + + + + + A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides. + https://orcid.org/0000-0003-3162-7490 + https://www.merriam-webster.com/dictionary/pentagonal + + + + + + + + + A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal. + + 2018-11-12T19:01:51Z + dysgenesis + quality + PATO:0040017 + dysplastic growth + + + + + A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal. + https://www.cancer.gov/publications/dictionaries/cancer-terms/def/dysplasia + + + + + + + + + Fibrosis is the formation of excess fibrous connective tissue in an organ or tissue in a reparative or reactive process. + + 2018-11-12T23:16:17Z + quality + PATO:0040019 + fibrotic + + + + + Fibrosis is the formation of excess fibrous connective tissue in an organ or tissue in a reparative or reactive process. + https://en.wikipedia.org/wiki/Fibrosis + + + + + + + + + Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal. + + 2018-11-16T22:52:49Z + quality + PATO:0040020 + spayed female + + + + + + + + + A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present. + http://orcid.org/0000-0001-5208-3432 + quality + PATO:0040025 + lesioned + + + + + A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present. + NCIT:C3824 + + + + + + + + + + A rate which is relatively normal. + quality + PATO:0045000 + + + normal rate + + + + + + + + + + + + + + + A quality of an object that has a value that is normal or average. + Luke Slater + 2017-12-21T14:11:01Z + quality + PATO:0045001 + normal object quality + + + + + + + + + + An acidity which is relatively normal. + quality + PATO:0045002 + + normal acidity + + + + + + + + + + A adhesivity which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045003 + + normal adhesivity + + + + + + + + + + An affinity which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045004 + + normal affinity + + + + + + + + + + An age which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045005 + + normal age + + + + + + + + + + An avidity which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045006 + + + normal avidity + + + + + + + + + + A behavioural quality of a process inhering in a bearer by virtue of the bearer's exhibiting normal or average activity. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045007 + + normal behavioural activity + + + + + + + + + + A cellular motility which is normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045008 + + normal cellular motility + + + + + + + + + + A coiling which is normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045009 + + + normal coiling + + + + + + + + + + A concentration which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045010 + + + normal concentration + + + + + + + + + + A contractility which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045011 + + + normal contractility + + + + + + + + + + A coordination which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045012 + + + normal coordination + + + + + + + + + + A curvature which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045013 + + normal curvature + + + + + + + + + + A distance which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045014 + + + normal distance + + + + + + + + + + An efficiency which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045015 + + normal efficiency + + + + + + + + + + An elasticity which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045016 + + normal elasticity + + + + + + + + + + A fecundity which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045017 + + + normal fecundity + + + + + + + + + + A female fertility which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045018 + + + normal female fertility + + + + + + + + + + A female receptivity which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045019 + + + normal female receptivity + + + + + + + + + + A fertility which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045020 + + + normal fertility + + + + + + + + + + A flexibility which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045021 + + + normal flexibility + + + + + + + + + + A fluid flow which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045022 + + normal fluid flow + + + + + + + + + + A fluorescence which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045023 + + normal fluorescence + + + + + + + + + + A force which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045024 + + normal force + + + + + + + + + + A fragility which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045025 + + + normal fragility + + + + + + + + + + A life span which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045026 + normal life span + + + + + + + + + + A magnetism which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045027 + + + normal magnetism + + + + + + + + + + A male fertility which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045028 + + + normal male fertility + + + + + + + + + + A male receptivity which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045029 + + + normal male receptivity + + + + + + + + + + A mass which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045030 + + normal mass + + + + + + + + + + A density which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045031 + + normal mass density + + + + + + + + + + A mobility which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045032 + + normal mobility + + + + + + + + + + An odor quality of having relatively normal or average odor. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045033 + + normal odor + + + + + + + + + + An osmolality which is relatively normal or average odor. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045034 + + + normal osmolality + + + + + + + + + + An osmolarity which is relatively normal or average odor. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045035 + + + normal osmolarity + + + + + + + + + + A permeability which is relatively normal or average. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045036 + + + normal permeability + + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a normal or average extent. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045037 + + normal phosphorylation + + + + + + + + + + A photosensitivity which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045038 + + + + normal photosensitivity + + + + + + + + + + A degree of pigmentation quality which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045039 + + + normal pigmentation + + + + + + + + + + A position which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045040 + + normal position + + + + + + + + + + An angle which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045041 + + + normal angle to + + + + + + + + + + A distribution which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045042 + + normal distribution + + + + + + + + + + An elevation which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045043 + + normal elevation + + + + + + + + + + A pressure which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045044 + + normal pressure + + + + + + + + + + A radioactivity which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045045 + + normal radioactivity + + + + + + + + + + A radiopacity which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045046 + + + normal radiopacity + + + + + + + + + + A resistance to a stimulus which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045047 + + + + normal resistance to + + + + + + + + + + A sensitivity to irradiation which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045048 + + + normal sensitivity to irradiation + + + + + + + + + + A sensitivity toward an external stimulus which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045049 + + + + normal sensitivity toward + + + + + + + + + + A size quality which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045050 + + normal size + + + + + + + + + + An area which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045051 + + normal area + + + + + + + + + + A depth quality which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045052 + + normal depth + + + + + + + + + + A height which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045053 + + normal height + + + + + + + + + + A length quality which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045054 + + normal length + + + + + + + + + + A diameter which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045055 + + normal diameter + + + + + + + + + + An anterior-posterior diameter which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045056 + + normal anterior-posterior diameter + + + + + + + + + + A perimeter which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045057 + + normal perimeter + + + + + + + + + + A circumference which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045058 + + normal circumference + + + + + + + + + + A thickness which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045059 + + normal thickness + + + + + + + + + + A volume which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045060 + + + normal volume + + + + + + + + + + A width which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045061 + + normal width + + + + + + + + + + A solubility which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045062 + + + + normal solubility + + + + + + + + + + A speed which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045063 + + normal speed + + + + + + + + + + A strength which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045064 + + normal strength + + + + + + + + + + A fatigability which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045065 + + + normal fatigability + + + + + + + + + + A susceptibility toward an external stimulus which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045066 + + + + normal susceptibility toward + + + + + + + + + + A temperature which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045067 + + normal temperature + + + + + + + + + + A tendency which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045068 + + normal tendency + + + + + + + + + + A threshold which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045069 + + + + normal threshold + + + + + + + + + + A tolerance to an external stimulus which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045070 + + + normal tolerance to + + + + + + + + + + A tonicity which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045071 + + + normal tonicity + + + + + + + + + + A turgor which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045072 + + + normal turgor + + + + + + + + + + + + + + + A quality of aprocess that has a value that is normal or average. + Luke Slater + 2017-12-21T14:11:01Z + quality + PATO:0045073 + normal process quality + + + + + + + + + + + + + + + A variability which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045074 + + normal variability + + + + + + + + + + + + + + + A variability which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045075 + + normal variability of color + + + + + + + + + + + + + + + A variability of rate which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045076 + + normal variability of rate + + + + + + + + + + + + + + + A variability of size which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045077 + + normal variability of size + + + + + + + + + + + + + + + A variability of temperature which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045078 + + normal variability of temperature + + + + + + + + + + A velocity which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045079 + + normal velocity + + + + + + + + + + A virulence which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045080 + + normal virulence + + + + + + + + + + A viscosity which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045081 + + normal viscosity + + + + + + + + + + A waxiness which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045082 + + normal waxiness + + + + + + + + + + A wetness which is relatively normal or average + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045083 + + normal wetness + + + + + + + + + + A duration quality of a process which is relatively normal. + quality + PATO:0045084 + + normal duration + + + + + + + + + + A duration quality of temperature quality of a process which is relatively normal. + quality + PATO:0045085 + + normal duration of temperature + + + + + + + + + + An occurrence which is relatively normal. + quality + PATO:0045086 + + normal occurrence + + + + + + + + + + A frequency which is relatively normal. + quality + PATO:0045087 + + + normal frequency + + + + + + + + + + A sensitivity of a process which is relatively normal. + quality + PATO:0045088 + + + normal sensitivity of a process + + + + + + + + + + A sensitivity of occurrent to oxygen which is relatively normal. + quality + PATO:0045089 + + + normal sensitivity of a process to oxygen + + + + + + + + + The four cardinal directions or cardinal points are the directions north, east, south, and west, commonly denoted by their initials, N, E, S, W. East and west are at right angles to north and south, with east being in the clockwise direction of rotation from north and west being directly opposite east. + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045090 + + cardinal direction + + + + + The four cardinal directions or cardinal points are the directions north, east, south, and west, commonly denoted by their initials, N, E, S, W. East and west are at right angles to north and south, with east being in the clockwise direction of rotation from north and west being directly opposite east. + Wikipedia:http://en.wikipedia.org/wiki/Cardinal_direction + + + + + + + + + North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west. + + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045091 + + north + + + + + North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west. + Wikipedia:http://en.wikipedia.org/wiki/North + + + + + + + + + East is one of the four cardinal directions or points of the compass. It is the opposite direction from west. + + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045092 + + east + + + + + East is one of the four cardinal directions or points of the compass. It is the opposite direction from west. + Wikipedia:http://en.wikipedia.org/wiki/East + + + + + + + + + South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west. + + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045093 + + south + + + + + South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west. + Wikipedia:http://en.wikipedia.org/wiki/South + + + + + + + + + West is one of the four cardinal directions or points of the compass. It is the opposite direction from east. + + Luke Slater + 2017-12-22T14:16:43Z + quality + PATO:0045094 + + west + + + + + West is one of the four cardinal directions or points of the compass. It is the opposite direction from east. + Wikipedia:http://en.wikipedia.org/wiki/West + + + + + + + + + The number of repeated events per unit time, occurring in a repeating series. (e.g. the number of heart beats occurring over 1 minute) + quality + PATO:0050000 + rate of occurence + + + + + The number of repeated events per unit time, occurring in a repeating series. (e.g. the number of heart beats occurring over 1 minute) + https://orcid.org/0000-0002-9943-9018 + + + + + + + + + The rate of output of a continuous process. Example include: growth rate, cell migration rate, enzyme reaction rate. + quality + PATO:0050001 + rate of continuous process + + + + + The rate of output of a continuous process. Example include: growth rate, cell migration rate, enzyme reaction rate. + https://orcid.org/0000-0002-9943-9018 + + + + + + + + + + A spatial distribution of a process in which the process occupies a smaller length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type. + midori + 2019-07-29T14:22:24Z + quality + PATO:0055001 + decreased spatial extent of a process + + + + + A spatial distribution of a process in which the process occupies a smaller length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type. + orcid:0000-0003-4148-4606 + + + + + + + + + + A spatial distribution of a process in which the process occupies a greater length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type. + midori + 2019-07-29T14:23:31Z + quality + PATO:0055002 + increased spatial extent of a process + + + + + A spatial distribution of a process in which the process occupies a greater length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type. + https://orcid.org/0000-0003-4148-4606 + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being present in one sex and absent from the other in members of the same species. + http://orcid.org/0000-0002-1373-1705 + 2019-08-23T08:46:30Z + quality + PATO:0060001 + sex-specific + + + + + A quality inhering in a bearer by virtue of the bearer's being present in one sex and absent from the other in members of the same species. + http://orcid.org/0000-0002-1373-1705 + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being present in males and absent from females in members of the same species. + http://orcid.org/0000-0002-1373-1705 + 2019-08-23T08:49:59Z + quality + PATO:0060002 + male-specific + + + + + A quality inhering in a bearer by virtue of the bearer's being present in males and absent from females in members of the same species. + http://orcid.org/0000-0002-1373-1705 + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being present in females and absent from males in members of the same species. + http://orcid.org/0000-0002-1373-1705 + 2019-08-23T08:51:22Z + quality + PATO:0060003 + female-specific + + + + + A quality inhering in a bearer by virtue of the bearer's being present in females and absent from males in members of the same species. + http://orcid.org/0000-0002-1373-1705 + + + + + + + diff --git a/pato.json b/pato.json index 2da07e27..994ee92c 100644 --- a/pato.json +++ b/pato.json @@ -5510,10 +5510,6 @@ } ] }, "type" : "CLASS" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "type" : "PROPERTY", - "lbl" : "has_obo_namespace" }, { "id" : "http://purl.obolibrary.org/obo/pato#similar_in_magnitude_relative_to", "meta" : { @@ -9712,10 +9708,6 @@ }, "type" : "CLASS", "lbl" : "herniated out of" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", - "type" : "PROPERTY", - "lbl" : "has_obo_format_version" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0015009", "meta" : { @@ -10850,10 +10842,6 @@ }, "type" : "CLASS", "lbl" : "saturated blue" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym", - "type" : "PROPERTY", - "lbl" : "has_broad_synonym" }, { "id" : "http://purl.obolibrary.org/obo/pato#realized_by", "meta" : { @@ -12944,10 +12932,6 @@ }, "type" : "PROPERTY", "lbl" : "has_dividend_quality" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0100001", - "type" : "PROPERTY", - "lbl" : "term replaced by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001248", "meta" : { @@ -13266,10 +13250,6 @@ }, "type" : "CLASS", "lbl" : "light blue" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "type" : "PROPERTY", - "lbl" : "has_alternative_id" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000390", "meta" : { @@ -14914,10 +14894,6 @@ }, "type" : "CLASS", "lbl" : "decreased susceptibility toward" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "type" : "PROPERTY", - "lbl" : "shorthand" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001673", "meta" : { @@ -18264,10 +18240,6 @@ }, "type" : "CLASS", "lbl" : "obsolete learning and memory value" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", - "type" : "PROPERTY", - "lbl" : "has_related_synonym" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000705", "meta" : { @@ -28080,10 +28052,6 @@ }, "type" : "CLASS", "lbl" : "dysplastic" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000115", - "type" : "PROPERTY", - "lbl" : "definition" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001509", "meta" : { @@ -30195,10 +30163,6 @@ }, "type" : "CLASS", "lbl" : "defasciculated" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref", - "type" : "PROPERTY", - "lbl" : "database_cross_reference" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000620", "meta" : { @@ -31330,10 +31294,6 @@ }, "type" : "CLASS", "lbl" : "back" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#consider", - "type" : "PROPERTY", - "lbl" : "consider" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001902", "meta" : { @@ -32848,10 +32808,6 @@ }, "type" : "CLASS", "lbl" : "obsolete absolute efficiency" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym", - "type" : "PROPERTY", - "lbl" : "has_narrow_synonym" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002392", "meta" : { @@ -43762,10 +43718,6 @@ }, "type" : "CLASS", "lbl" : "obsolete symmetry value" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", - "type" : "PROPERTY", - "lbl" : "in_subset" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001828", "meta" : { @@ -45220,28 +45172,6 @@ }, "type" : "CLASS", "lbl" : "obsolete absolute width" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002604", - "meta" : { - "xrefs" : [ { - "val" : "RO:0002604" - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#is_class_level", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "is_opposite_of" - } ] - }, - "type" : "PROPERTY", - "lbl" : "is opposite of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000936", "meta" : { @@ -46396,19 +46326,53 @@ }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000050", "meta" : { + "definition" : { + "val" : "a core relation that holds between a part and its whole", + "xrefs" : [ ] + }, "xrefs" : [ { "val" : "BFO:0000050" } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "is part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this day is part of this year (occurrent parthood)" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "part_of" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my brain is part of my body (continuant parthood, two material entities)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." } ] }, "type" : "PROPERTY", - "lbl" : "part_of" + "lbl" : "part of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000085", "meta" : { @@ -46557,14 +46521,41 @@ "val" : "BFO:0000051" } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this year has part this day (occurrent parthood)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_part" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "has_part" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my body has part my brain (continuant parthood, two material entities)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has part" } ] }, "type" : "PROPERTY", @@ -48608,10 +48599,6 @@ }, "type" : "CLASS", "lbl" : "paleopolyploid" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym", - "type" : "PROPERTY", - "lbl" : "has_exact_synonym" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002249", "meta" : { @@ -49661,14 +49648,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001163", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001159" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001247", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001163", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001159" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001381", "pred" : "is_a", @@ -49677,10 +49664,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001280", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000954" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000088", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001756", "pred" : "is_a", @@ -49693,10 +49676,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000338", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001848", "pred" : "is_a", @@ -49709,22 +49688,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001651", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001178" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000458", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001968", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000325", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000182", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001043", "pred" : "is_a", @@ -49733,18 +49700,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000205", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001765", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000195", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000628", "pred" : "is_a", @@ -49757,10 +49716,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000384", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001894" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000075", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000404", "pred" : "is_a", @@ -49769,26 +49724,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045072", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000218", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000935", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000802", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000672", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000328", "pred" : "is_a", @@ -49801,22 +49740,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000383", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001894" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000815", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001166", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002462", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001033", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001910", "pred" : "is_a", @@ -49825,10 +49752,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001920", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000792", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002397", "pred" : "is_a", @@ -49841,10 +49764,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002487", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001059", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002629", "pred" : "is_a", @@ -49861,14 +49780,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002252", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000922", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001179", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002115", "pred" : "is_a", @@ -49877,10 +49788,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000303", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001140", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002361", "pred" : "is_a", @@ -49893,14 +49800,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000578", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000445", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001629", "pred" : "is_a", @@ -49913,18 +49812,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001729", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000565", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002318" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000312", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002485", "pred" : "is_a", @@ -49937,10 +49828,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002463", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000698", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001869", "pred" : "is_a", @@ -49953,10 +49840,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002103", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000685", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001774", "pred" : "is_a", @@ -49965,10 +49848,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002476", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000432", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001757", "pred" : "is_a", @@ -49985,10 +49864,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001403", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001273", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001496", "pred" : "is_a", @@ -50013,18 +49888,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001382", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000552", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000828", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000947", "pred" : "is_a", @@ -50049,10 +49916,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002339", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000454" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001642", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001515", "pred" : "is_a", @@ -50082,37 +49945,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001709" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000061", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000204", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000194", + "sub" : "http://purl.obolibrary.org/obo/PATO_0015007", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000074", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000217", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000920", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", "pred" : "is_a", @@ -50133,30 +49976,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000050", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000165" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000087", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000814", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000551", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000599", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000921" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001045", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", "pred" : "is_a", @@ -50165,10 +49992,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001297", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001294" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000671", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000415", "pred" : "is_a", @@ -50181,10 +50004,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045087", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045000" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000791", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045091", "pred" : "is_a", @@ -50197,10 +50016,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000327", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000016" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000934", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001394", "pred" : "is_a", @@ -50209,22 +50024,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001473", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000470" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000801", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001058", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001890", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000181", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001396", "pred" : "is_a", @@ -50233,10 +50036,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000708", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000457", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", "pred" : "is_a", @@ -50265,42 +50064,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002362", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002360" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000577", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002170", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001786" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000444", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002090", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000311", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000564", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000707", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001165", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001383", "pred" : "is_a", @@ -50309,10 +50084,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001480", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001032", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002464", "pred" : "is_a", @@ -50321,14 +50092,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045077", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000697", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000827", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001713", "pred" : "is_a", @@ -50337,14 +50100,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002116", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000684", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000431", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001467", "pred" : "is_a", @@ -50382,17 +50137,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001590" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", + "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045070", "pred" : "is_a", @@ -50445,18 +50200,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001669", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000447", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000314", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000567", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000048", "pred" : "is_a", @@ -50465,10 +50208,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001677", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001029" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000291", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -50489,22 +50228,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002471", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001049", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000171", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001824", "pred" : "is_a", @@ -50513,10 +50244,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001895", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000047" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000184", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002021", "pred" : "is_a", @@ -50529,30 +50256,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002250", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002248" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001966", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000207", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000197", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001966", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001986", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000064", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015008", "pred" : "is_a", @@ -50565,14 +50280,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000781", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001155", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001863", "pred" : "is_a", @@ -50586,21 +50293,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000924", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001048", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002332", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001431" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002470", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002332", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001431" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002081", "pred" : "is_a", @@ -50633,22 +50332,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002383", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002381" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000687", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000434", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002126", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000301", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002030", "pred" : "is_a", @@ -50661,42 +50348,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002083", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001555" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000554", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000421", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001927", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001290" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001142", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001393", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001374" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000674", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002247", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000804", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000541", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002177", "pred" : "is_a", @@ -50705,10 +50368,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001501", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000661", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001371", "pred" : "is_a", @@ -50717,18 +50376,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002068", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002067" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000817", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001633", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000794", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001472", "pred" : "is_a", @@ -50745,10 +50396,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000911", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000339", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001620", "pred" : "is_a", @@ -50757,10 +50404,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001248", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002004", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045020", "pred" : "is_a", @@ -50789,18 +50432,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001652", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000089", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001679", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000918" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001631", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045010", "pred" : "is_a", @@ -50809,18 +50444,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001958", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000459", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001967", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000326", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001728", "pred" : "is_a", @@ -50837,26 +50464,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001281", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000951" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000579", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001334", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001708" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001644", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000068", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000446", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001650", "pred" : "is_a", @@ -50865,10 +50480,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001673", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000170", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001801", "pred" : "is_a", @@ -50885,10 +50496,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001825", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000183", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001054", "pred" : "is_a", @@ -50913,10 +50520,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001991", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000206", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000051", "pred" : "is_a", @@ -50925,10 +50528,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002022", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000196", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000317", "pred" : "is_a", @@ -50937,18 +50536,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002472", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000063", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002130", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002129" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000076", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002251", "pred" : "is_a", @@ -50957,10 +50548,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002372", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002369" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000219", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001764", "pred" : "is_a", @@ -50969,30 +50556,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002538", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002005" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000660", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000923", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000793", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002486", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000780", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000803", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002628", "pred" : "is_a", @@ -51009,18 +50576,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002246", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000910", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001047", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000290", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001295", "pred" : "is_a", @@ -51033,18 +50588,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000566", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000313", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000709", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002317", "pred" : "is_a", @@ -51061,14 +50604,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000040" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000699", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000829", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002066", "pred" : "is_a", @@ -51081,10 +50616,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002384", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002381" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000686", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002475", "pred" : "is_a", @@ -51093,10 +50624,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000304", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000433", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002082", "pred" : "is_a", @@ -51109,10 +50636,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001514", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001274", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001767", "pred" : "is_a", @@ -51122,17 +50645,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002067" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000816", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001230" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", "pred" : "is_a", @@ -51149,10 +50668,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001164", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001019" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000553", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001031", "pred" : "is_a", @@ -51161,18 +50676,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000068" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000420", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001773", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001141", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", "pred" : "is_a", @@ -51181,18 +50688,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001643", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000673", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001402", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000540", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001542", "pred" : "is_a", @@ -51201,6 +50700,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001171", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001031" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001307", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000963", "pred" : "is_a", @@ -51209,10 +50712,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045079", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002242" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001307", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001599", "pred" : "is_a", @@ -51221,10 +50720,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001318", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000189" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001307", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", "pred" : "is_a", @@ -51273,10 +50768,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002118", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000470" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000810", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001959", "pred" : "is_a", @@ -51285,10 +50776,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001713", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001711" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000227", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001763", "pred" : "is_a", @@ -51297,22 +50784,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001948", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002255" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000084", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000107", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0055001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000097", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002362", "pred" : "is_a", @@ -51325,10 +50800,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000169", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000943", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002002", "pred" : "is_a", @@ -51337,46 +50808,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045070", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000515" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000930", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000128", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001035" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000837", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002427", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000717", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015021", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000561", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001068", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000201", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000704", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001904", "pred" : "is_a", @@ -51393,26 +50836,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000998", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000992" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000681", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0025001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0025000" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000191", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002029", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000214", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002338", "pred" : "is_a", @@ -51421,14 +50852,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002478", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001410" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000071", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000824", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000083", "pred" : "is_a", @@ -51445,10 +50868,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002187", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001042", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000337", "pred" : "is_a", @@ -51457,10 +50876,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002199", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002198" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000347", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002499", "pred" : "is_a", @@ -51497,10 +50912,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000152" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000334", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002127", "pred" : "is_a", @@ -51517,14 +50928,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002367", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000384" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001362", "pred" : "is_a", @@ -51537,14 +50952,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002267", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001175", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002015", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001786", "pred" : "is_a", @@ -51569,18 +50976,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002510", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001655", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001797", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000596", "pred" : "is_a", @@ -51589,10 +50988,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001658", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015009", "pred" : "is_a", @@ -51629,18 +51024,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001726", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001721" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001557", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000106", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000096", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001788", "pred" : "is_a", @@ -51649,26 +51032,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001823", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001822" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000942", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001894", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000047" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000239", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000822", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001937", "pred" : "is_a", @@ -51681,10 +51052,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002474", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001329" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001771", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001965", "pred" : "is_a", @@ -51701,42 +51068,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002140", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002138" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000200", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002541", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002460", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001431" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000190", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000716", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000849", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000213", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000560", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002460", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000261", "pred" : "is_a", @@ -51745,34 +51088,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002482", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000703", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000823", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000336", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000693", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002382", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002381" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000836", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000680", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001162", "pred" : "is_a", @@ -51781,18 +51104,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002080", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001444" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000226", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002176", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002175" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000359", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002043", "pred" : "is_a", @@ -51821,14 +51136,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002233", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001174", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001041", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000587", "pred" : "is_a", @@ -51837,30 +51144,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000479", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000346", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001067", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000466", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002188", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000729", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045068", "pred" : "is_a", @@ -51881,10 +51168,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0025000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001641", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001359", "pred" : "is_a", @@ -51905,18 +51188,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001410", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000349", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001597", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002158", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001623", "pred" : "is_a", @@ -51929,22 +51204,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001832", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000891" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000469", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001614", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000467", "pred" : "is_a", @@ -51953,18 +51224,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001723", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001720" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000193", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001517", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001516" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000073", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001624", "pred" : "is_a", @@ -51977,10 +51240,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001305", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000216", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002374", "pred" : "is_a", @@ -51989,26 +51248,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001747", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001744" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000932", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001499", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002398", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000229", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001808", "pred" : "is_a", @@ -52017,14 +51264,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000060", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000086", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000109", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001595", "pred" : "is_a", @@ -52033,14 +51272,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001592", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000099", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002528", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001522", "pred" : "is_a", @@ -52049,14 +51280,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002420", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000683", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000430", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001781", "pred" : "is_a", @@ -52065,10 +51288,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002350", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001057", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002122", "pred" : "is_a", @@ -52077,10 +51296,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002147", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000959", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001908", "pred" : "is_a", @@ -52089,38 +51304,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002295", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000550", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001803", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000927" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001177", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000826", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000933", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000800", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000670", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002497", "pred" : "is_a", @@ -52129,22 +51320,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002483", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000180", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000813", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001962", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000203", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001902", "pred" : "is_a", @@ -52157,10 +51336,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001892", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000790", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000708", "pred" : "is_a", @@ -52169,10 +51344,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015027", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000589", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001930", "pred" : "is_a", @@ -52193,10 +51364,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000569", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000119" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001151", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000583", "pred" : "is_a", @@ -52206,17 +51373,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000456", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002185", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002183" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002365", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000383" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002185", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002183" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000646", "pred" : "is_a", @@ -52225,34 +51388,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001244", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001044", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000839", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000576", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000443", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000945", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000310", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000563", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001300", "pred" : "is_a", @@ -52277,14 +51416,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002269", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000696", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002159", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045031", "pred" : "is_a", @@ -52309,10 +51440,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001319", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000189" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001666", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", "pred" : "is_a", @@ -52325,14 +51452,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001615", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", "pred" : "is_a", @@ -52353,22 +51480,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001625", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001510" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000348", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000964", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000957" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002091", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001627", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001626" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002091", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001594", "pred" : "is_a", @@ -52377,18 +51500,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001506", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001505" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000931", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001559", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000072", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001490", "pred" : "is_a", @@ -52401,22 +51516,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0010005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002062" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000811", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002271", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0055002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", "pred" : "is_a", @@ -52425,34 +51536,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001859", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000769" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000228", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001858", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002076" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000108", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001973", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000098", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001593", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002529", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002001", "pred" : "is_a", @@ -52477,26 +51572,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001626", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001640", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000562", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000958", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001069", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000705", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001963", "pred" : "is_a", @@ -52505,30 +51580,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001903", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000825", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002148", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000682", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000082", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000838", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001056", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005013", "pred" : "is_a", @@ -52537,18 +51596,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000616", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000812", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002337", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001877" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000202", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000453", "pred" : "is_a", @@ -52569,10 +51620,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000440", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000192", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", "pred" : "is_a", @@ -52582,17 +51629,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000215", + "sub" : "http://purl.obolibrary.org/obo/PATO_0000944", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002124", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000944", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002366", "pred" : "is_a", @@ -52625,10 +51668,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001243", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000468", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002228", "pred" : "is_a", @@ -52637,14 +51676,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000719", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001150", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000335", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001931", "pred" : "is_a", @@ -52661,10 +51692,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002050", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0001905" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001176", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002186", "pred" : "is_a", @@ -52689,18 +51716,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000625", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000575", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001324", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000442", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045006", "pred" : "is_a", @@ -52725,14 +51744,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002016" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000284", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000031", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002326", "pred" : "is_a", @@ -52749,14 +51760,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000406", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001591" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000667", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000164", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002139", "pred" : "is_a", @@ -52769,10 +51772,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001702", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001424" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000391", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001690", "pred" : "is_a", @@ -52781,34 +51780,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000057", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002323" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000534", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000787", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002467", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000401", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000177", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000654", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000521", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", "pred" : "is_a", @@ -52821,14 +51796,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000297", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002206", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002218", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002206", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002368", "pred" : "is_a", @@ -52837,18 +51812,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0030007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0030003" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001136", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002157", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001852" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001003", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000927", "pred" : "is_a", @@ -52873,18 +51840,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000307", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000271", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001389", "pred" : "is_a", @@ -52893,22 +51852,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000463", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001998" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001149", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001375", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001393" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001016", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000151", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000613", "pred" : "is_a", @@ -52941,14 +51888,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001487", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001002", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002085", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002322", "pred" : "is_a", @@ -52961,10 +51900,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001341", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001342" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001122", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000773", "pred" : "is_a", @@ -52973,34 +51908,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001462", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001464" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000641", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000894", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000948", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000904", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002509", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000774", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000917", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001342", "pred" : "is_a", @@ -53041,10 +51956,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002444", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000881", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001795", "pred" : "is_a", @@ -53057,10 +51968,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000163", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001880", "pred" : "is_a", @@ -53073,38 +51980,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001690" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000559", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001691", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001579" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000296", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002334", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002331" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000426", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000679", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000176", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040019", "pred" : "is_a", @@ -53121,34 +52008,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001897", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000666", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002335", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000929", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000799", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002455", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000390", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002152", "pred" : "is_a", @@ -53157,38 +52028,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001841", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000049" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000786", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000533", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000400", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000150", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000809", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000614", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000440" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001148", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001015", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001025", "pred" : "is_a", @@ -53205,18 +52052,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002369", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002370" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001135", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001749", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000270", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001376", "pred" : "is_a", @@ -53229,26 +52068,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000283", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000030", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000439", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002058", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000306", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001475", "pred" : "is_a", @@ -53257,10 +52080,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045041", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001121", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001378", "pred" : "is_a", @@ -53301,14 +52120,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001555", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0000070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001134", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001001", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001591", "pred" : "is_a", @@ -53317,10 +52128,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001936", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001891" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002086", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001546", "pred" : "is_a", @@ -53329,10 +52136,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001586", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000916", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", "pred" : "is_a", @@ -53341,26 +52144,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001343", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001337" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000653", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001952", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001864", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001453", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001435" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000520", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001484", "pred" : "is_a", @@ -53381,18 +52172,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001907", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000880", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001796", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000893", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001946", "pred" : "is_a", @@ -53401,10 +52184,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000189", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000903", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001593", "pred" : "is_a", @@ -53413,18 +52192,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001704", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001424" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000393", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000789", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000536", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002465", "pred" : "is_a", @@ -53461,50 +52228,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000153", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001961", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001934", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000656", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000523", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001961", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000020", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000896", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002358", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000286", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001242", "pred" : "is_a", @@ -53517,10 +52260,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002419", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000906", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000647", "pred" : "is_a", @@ -53529,34 +52268,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001911", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002076" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000776", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002299", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000919", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000166", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045032", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000510", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030005", "pred" : "is_a", @@ -53565,14 +52284,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015010", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015009" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0010004", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0010002" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000381", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000044" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0010004", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0010002" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002109", "pred" : "is_a", @@ -53581,18 +52300,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045083", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001125", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001498", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002349", "pred" : "is_a", @@ -53601,14 +52312,6 @@ "sub" : "http://purl.obolibrary.org/obo/pato#has_divisor_quality", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/pato#has_ratio_quality" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001112", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000429", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005017", "pred" : "is_a", @@ -53621,38 +52324,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002301", "pred" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000549", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000411", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000947" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001138", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000394", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000049" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000669", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001882", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000260", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000416", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001251", "pred" : "is_a", @@ -53665,10 +52348,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001399", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001471", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002320", "pred" : "is_a", @@ -53693,14 +52372,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002342", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002227" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001111", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001231", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001989", "pred" : "is_a", @@ -53713,10 +52384,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001481", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000167", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001018", "pred" : "is_a", @@ -53737,10 +52404,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001698", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000547" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000883", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015022", "pred" : "is_a", @@ -53749,10 +52412,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001440", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001531" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000750", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001855", "pred" : "is_a", @@ -53781,10 +52440,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002537", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000990", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002137", "pred" : "is_a", @@ -53801,10 +52456,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000870", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001798", "pred" : "is_a", @@ -53821,22 +52472,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001984", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002355", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002353" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000668", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002355", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002353" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040004", "pred" : "is_a", @@ -53845,14 +52492,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002029", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002027" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001613", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000392", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045009", "pred" : "is_a", @@ -53870,25 +52509,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002016" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000535", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000285", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000788", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001613", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002466", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000032", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045027", "pred" : "is_a", @@ -53897,10 +52524,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001613", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001868", "pred" : "is_a", @@ -53909,10 +52532,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000655", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015019", "pred" : "is_a", @@ -53921,14 +52540,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000428", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000298", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000522", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000014", "pred" : "is_a", @@ -53937,34 +52548,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000178", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000775", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001840", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002181", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000045", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000464", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001998" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001004", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001883", "pred" : "is_a", @@ -53993,10 +52584,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002278", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001961" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001124", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000630", "pred" : "is_a", @@ -54005,10 +52592,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000043", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001017", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000592", "pred" : "is_a", @@ -54021,26 +52604,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001870", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000548", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001137", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000272", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001337", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001895" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001363", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001388", "pred" : "is_a", @@ -54089,10 +52656,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001486", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001123", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001827", "pred" : "is_a", @@ -54101,10 +52664,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001497", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001110", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", @@ -54113,46 +52672,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002506", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000762", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000882", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000179", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001441", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001531" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000046", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000895", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002441", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002440" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000059", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002084", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000905", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000759", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -54189,10 +52716,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001030", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000449", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002045", "pred" : "is_a", @@ -54201,10 +52724,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001600", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000316", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002102", "pred" : "is_a", @@ -54213,26 +52732,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001995", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000209", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000199", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001022", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000436", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000079", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001743", "pred" : "is_a", @@ -54273,10 +52776,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001819", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000608" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000556", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045067", "pred" : "is_a", @@ -54289,18 +52788,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001152", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001043" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001038", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015024", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000973" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000280", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001178", "pred" : "is_a", @@ -54309,18 +52800,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002107", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000160", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000293", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001158", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001924", "pred" : "is_a", @@ -54337,18 +52816,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000410", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000173", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001167", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001020" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000053", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045055", "pred" : "is_a", @@ -54361,34 +52832,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001159", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001144", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001011", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000900", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000688", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000913", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002375", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001131", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001397", "pred" : "is_a", @@ -54401,10 +52852,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045080", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002146" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001157", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045060", "pred" : "is_a", @@ -54433,38 +52880,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001364", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001598" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000939", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000676", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000947" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000543", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000806", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000663", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002256", "pred" : "is_a", @@ -54477,14 +52904,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002396", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000819", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000796", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002147", "pred" : "is_a", @@ -54497,22 +52916,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001590", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000530", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000783", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002363", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000952" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001647", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002038", "pred" : "is_a", @@ -54525,14 +52932,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001637", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000926", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000650", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002285", "pred" : "is_a", @@ -54549,14 +52948,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045029", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000208", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000198", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001021", "pred" : "is_a", @@ -54565,10 +52956,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001624", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000065", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002148", "pred" : "is_a", @@ -54589,18 +52976,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002308", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000448", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000315", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000568", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001886", "pred" : "is_a", @@ -54613,10 +52988,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0030004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0030000" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000435", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000185", "pred" : "is_a", @@ -54629,18 +53000,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001997", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000992", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001548" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000302", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001997", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002348", "pred" : "is_a", @@ -54657,30 +53024,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000319", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000292", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002117", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015007", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000172", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001037", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000274", "pred" : "is_a", @@ -54697,26 +53048,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045061", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000921" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001408", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045021", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001143", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001408", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000273", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001434" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001010", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045030", "pred" : "is_a", @@ -54729,26 +53072,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001335", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001895" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001169", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002333", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001036", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001608", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001156", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001472", "pred" : "is_a", @@ -54757,14 +53088,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0020000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000047" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000818", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000555", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002221", "pred" : "is_a", @@ -54773,10 +53096,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002472", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002242" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001766", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002133", "pred" : "is_a", @@ -54793,34 +53112,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000665", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000016" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000675", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000303", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000542", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001513", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002095", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002246", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001035" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000662", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001415", "pred" : "is_a", @@ -54829,22 +53128,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001697", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000547" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000925", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002286", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000795", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001130", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002354", "pred" : "is_a", @@ -54853,14 +53140,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000782", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000805", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002105", "pred" : "is_a", @@ -54877,34 +53156,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001983", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000175", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000305", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001736", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001546" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000042", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000055", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000558", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000425", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045006", "pred" : "is_a", @@ -54921,22 +53176,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001815" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000678", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002088", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001673" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000545", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000808", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002136", "pred" : "is_a", @@ -54949,10 +53192,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001320", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000454" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000412", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045039", "pred" : "is_a", @@ -54961,10 +53200,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001024", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000798", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000309", "pred" : "is_a", @@ -54973,10 +53208,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000516" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001027", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001360", "pred" : "is_a", @@ -55001,22 +53232,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001260", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000951" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001147", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001014", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001621", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000282", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045007", "pred" : "is_a", @@ -55029,18 +53248,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045081", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000998" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000162", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001289", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001287" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000295", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001922", "pred" : "is_a", @@ -55049,66 +53260,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001000", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001929", "pred" : "http://purl.obolibrary.org/obo/pato#towards", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001120", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000642", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001146", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001013", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001395", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001394" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001996", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000643", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001598" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001133", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001610", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002138", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002050", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000785", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000532", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002138", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045013", "pred" : "is_a", @@ -55137,26 +53312,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001873", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000946", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002132", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001384", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000928", + "sub" : "http://purl.obolibrary.org/obo/PATO_0000946", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000652", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001384", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002452", "pred" : "is_a", @@ -55173,18 +53340,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002449", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001633" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001240", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001714", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000573" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000902", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002044", "pred" : "is_a", @@ -55221,10 +53380,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001851", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000054", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045019", "pred" : "is_a", @@ -55233,18 +53388,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001853", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001450" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000187", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000152" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000437", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001851", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -55261,22 +53408,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001914", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001912" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000557", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000308", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000424", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000067", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001829", "pred" : "is_a", @@ -55285,18 +53420,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001817", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001815" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000677", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001980", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000544", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000299", "pred" : "is_a", @@ -55313,18 +53440,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001279", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001043" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000281", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001206", "pred" : "is_a", @@ -55357,10 +53476,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001288", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001287" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000294", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001201", "pred" : "is_a", @@ -55369,26 +53484,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001039", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000174", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000041", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001168", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001020" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001132", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000423", "pred" : "is_a", @@ -55397,10 +53496,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002450", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000048" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000901", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002395", "pred" : "is_a", @@ -55421,18 +53516,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001493", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001492" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001145", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001385", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001374" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001012", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001505", "pred" : "is_a", @@ -55441,18 +53528,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002409", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000664", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001580", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001690" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000797", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002414", "pred" : "is_a", @@ -55461,14 +53540,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001715", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000574" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000531", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000784", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002164", "pred" : "is_a", @@ -55489,14 +53560,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002031", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000807", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000914", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002291", "pred" : "is_a", @@ -55525,22 +53588,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002279", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002278" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002101", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002306", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002262", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002101", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001238", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002262", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000037", "pred" : "is_a", @@ -55549,46 +53608,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000387", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000048" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001095", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000996", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000743", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000500", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000863", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000513", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000085" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000876", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001105", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000585", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000596" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001082", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002162", "pred" : "is_a", @@ -55609,34 +53640,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002055", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000850", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000240", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000730", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000120", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001118", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000253", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000769", "pred" : "is_a", @@ -55645,18 +53652,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002305", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000649", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001452", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000373", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002282", "pred" : "is_a", @@ -55677,22 +53672,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000493", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001349", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001348" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001225", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000360", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001458", "pred" : "is_a", @@ -55709,14 +53692,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002223", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001212", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000889", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001688", "pred" : "is_a", @@ -55725,14 +53700,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002097", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000756", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000480", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002056", "pred" : "is_a", @@ -55750,13 +53717,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001648" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001933", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001587", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000027", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001933", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001314", "pred" : "is_a", @@ -55793,10 +53760,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001739", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001587", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001543", "pred" : "is_a", @@ -55805,10 +53768,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045074", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001227" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001587", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001899", "pred" : "is_a", @@ -55817,22 +53776,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001664", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001451", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001917", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001632" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000121", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002531", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045063", "pred" : "is_a", @@ -55841,14 +53788,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001257", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000954" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000254", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001950", "pred" : "is_a", @@ -55857,14 +53796,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000134", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045058", "pred" : "is_a", @@ -55878,9 +53809,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001767" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000001", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001750", "pred" : "is_a", @@ -55893,10 +53824,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000635", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000267", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015028", "pred" : "is_a", @@ -55921,10 +53848,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002282", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000147", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", "pred" : "is_a", @@ -55933,30 +53856,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000040" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000875", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045028", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000891" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001117", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000755", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000584", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000595" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001237", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045059", "pred" : "is_a", @@ -55973,14 +53880,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000626", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001094", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000742", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002370", "pred" : "is_a", @@ -55993,42 +53892,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045038", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000252", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000048" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000995", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000862", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000132", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001211", + "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002385", "pred" : "is_a", @@ -56037,18 +53916,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002343", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000631" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000385", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045087", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000044" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000528", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002392", "pred" : "is_a", @@ -56069,10 +53940,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001595" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000372", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001459", "pred" : "is_a", @@ -56081,22 +53948,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045086", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000768", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001104", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001689", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001687" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001081", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002098", "pred" : "is_a", @@ -56106,9 +53961,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000492", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001588", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002297", "pred" : "is_a", @@ -56121,14 +53976,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002272", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001224", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001588", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001918", "pred" : "is_a", @@ -56145,10 +53992,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001653", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001652" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001588", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001312", "pred" : "is_a", @@ -56165,10 +54008,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001028", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000399", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040013", "pred" : "is_a", @@ -56205,6 +54044,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001191", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001958", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001562", "pred" : "is_a", @@ -56213,10 +54056,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001356", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000529", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001256", "pred" : "is_a", @@ -56245,14 +54084,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000000", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001958", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", @@ -56265,34 +54096,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001695", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000266", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000013", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001987", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001958", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002067", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001820", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002532", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001751", "pred" : "is_a", @@ -56309,18 +54120,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000159", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000026", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000852", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002239", "pred" : "is_a", @@ -56337,18 +54136,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002373", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000732", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001214", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001071", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002300", "pred" : "is_a", @@ -56365,18 +54152,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002051", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001097", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000972", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001107", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002421", "pred" : "is_a", @@ -56385,10 +54160,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002378", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001979" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001084", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002425", "pred" : "is_a", @@ -56397,18 +54168,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000582", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000128" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001837", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000495", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000362", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001488", "pred" : "is_a", @@ -56417,10 +54176,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002276", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001533" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000482", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000570", "pred" : "is_a", @@ -56433,14 +54188,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045054", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000122" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000745", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000865", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045002", "pred" : "is_a", @@ -56453,10 +54200,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001348", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001335" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000878", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001456", "pred" : "is_a", @@ -56469,10 +54212,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001849", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000612", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001444", "pred" : "is_a", @@ -56497,10 +54236,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001205", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001206" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000269", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001311", "pred" : "is_a", @@ -56517,10 +54252,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045022", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000149", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001979", "pred" : "is_a", @@ -56537,26 +54268,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001727", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000376", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000519", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001560", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000077", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000029", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001563", "pred" : "is_a", @@ -56569,34 +54284,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001566" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000496", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000363", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000506", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045048", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000110", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045055" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000243", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001461", "pred" : "is_a", @@ -56613,10 +54308,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001246", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000952" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000123", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002346", "pred" : "is_a", @@ -56633,10 +54324,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000039", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000256", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001835", "pred" : "is_a", @@ -56657,10 +54344,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045035", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000003", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000629", "pred" : "is_a", @@ -56677,18 +54360,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002413", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001106", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000611", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000333", "pred" : "is_a", @@ -56697,30 +54372,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002304", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001479", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001083", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000997", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000501", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001226", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000864", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002227", "pred" : "is_a", @@ -56729,58 +54384,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001865", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000731", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000971", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001119", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002304", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000757", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000185" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001239", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000851", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000241", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002111", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001096", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002230", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000517", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002096", "pred" : "is_a", @@ -56813,34 +54436,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000888" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000494", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000637", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000361", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000877", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001213", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000639", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/PATO_0000585" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001070", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001695", "pred" : "is_a", @@ -56849,10 +54448,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045040", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000481", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002058", "pred" : "is_a", @@ -56861,10 +54456,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001442", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002079", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040010", "pred" : "is_a", @@ -56873,10 +54464,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002315", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000744", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", "pred" : "is_a", @@ -56893,10 +54480,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001312", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001310" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000148", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0010001", "pred" : "is_a", @@ -56913,10 +54496,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001700", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000062" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000388", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001313", "pred" : "is_a", @@ -56925,10 +54504,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002329", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000028", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002296", "pred" : "is_a", @@ -56937,14 +54512,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045010", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001692", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002160", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001708", "pred" : "is_a", @@ -56961,14 +54528,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001333", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045013", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001229", "pred" : "is_a", @@ -56989,10 +54556,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001332", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000518", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001559", "pred" : "is_a", @@ -57001,18 +54564,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001898", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001712" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001572", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001845", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000242", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001663", "pred" : "is_a", @@ -57034,9 +54589,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000040" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002530", + "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0045054" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045049", "pred" : "is_a", @@ -57045,42 +54600,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001193", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045054" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001258", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000954" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000255", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000135", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002352", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001729" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000002", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000268", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", "pred" : "is_a", @@ -57089,10 +54624,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001879", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000898", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000405", "pred" : "is_a", @@ -57105,26 +54636,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002325", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002323" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000908", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000165" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000778", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001875", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001861", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002013" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001875", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000152", "pred" : "is_a", @@ -57133,38 +54656,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002290", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001007", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000512", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000262", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000765", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000142", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000595", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045078", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000275", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005009", "pred" : "is_a", @@ -57177,14 +54672,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000639" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002024", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001999" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002024", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002445", "pred" : "is_a", @@ -57193,42 +54688,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002274", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001533" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000155", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000885", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001832", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000752", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000022", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002041", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002316", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002129", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001091", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002316", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002436", "pred" : "is_a", @@ -57257,14 +54732,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001478", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000418", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001101", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001598", "pred" : "is_a", @@ -57273,14 +54740,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002458", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000538", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001127", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001428", "pred" : "is_a", @@ -57289,14 +54748,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001604", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000658", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000382", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001617", "pred" : "is_a", @@ -57305,14 +54756,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000140", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000525", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001114", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001345", "pred" : "is_a", @@ -57345,18 +54788,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001366", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001616", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001100", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001684", "pred" : "is_a", @@ -57373,10 +54808,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001476", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001220", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001409", "pred" : "is_a", @@ -57390,17 +54821,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002413" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000156", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001583", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001726", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000023", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001681", "pred" : "is_a", @@ -57409,22 +54836,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000279", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000274" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000872", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000289", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001583", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000036", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001584", "pred" : "is_a", @@ -57433,10 +54844,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001352", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001019" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001583", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002357", "pred" : "is_a", @@ -57498,25 +54905,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000657", + "sub" : "http://purl.obolibrary.org/obo/PATO_0000021", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002052", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000021", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001876", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000524", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000016", "pred" : "is_a", @@ -57525,26 +54924,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001813", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001139", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001833", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001230", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000777", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001230", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000276", "pred" : "is_a", @@ -57557,42 +54948,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000058", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000511", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002416", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001687" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000154", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000884", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000897", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000287", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000034", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002040", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001355" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000907", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000395", "pred" : "is_a", @@ -57609,10 +54972,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001598" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001113", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002424", "pred" : "is_a", @@ -57625,10 +54984,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000622", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001090", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000165", "pred" : "is_a", @@ -57637,10 +54992,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002437", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001006", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002076", "pred" : "is_a", @@ -57653,10 +55004,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002049", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001787" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000417", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001346", "pred" : "is_a", @@ -57685,14 +55032,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001227", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000537", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001126", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000389", "pred" : "is_a", @@ -57777,10 +55116,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001951", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001232", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000938", "pred" : "is_a", @@ -57789,34 +55124,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001278", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000953" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001508", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000636", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0030003" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001562", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000125" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000871", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001584", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000288", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001562", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000125" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001671", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001566" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000035", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001353", "pred" : "is_a", @@ -57829,22 +55152,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015021" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000751", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000168", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001584", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001584", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001541", "pred" : "is_a", @@ -57861,10 +55168,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001814", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001722", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045034", "pred" : "is_a", @@ -57893,10 +55196,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000991", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002302", "pred" : "is_a", @@ -57909,26 +55208,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001890", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002075", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000633", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001129", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002075", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001843", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000491", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001723", "pred" : "is_a", @@ -57941,10 +55232,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000621", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000638", "pred" : "is_a", @@ -57961,30 +55248,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001580", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000887", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001603", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001116", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001956", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000754", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000251", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002277", "pred" : "is_a", @@ -57997,14 +55268,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001873", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000994", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000741", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002448", "pred" : "is_a", @@ -58017,38 +55280,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002402", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001791" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000131", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000861", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001830", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001009", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000874", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000264", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002180", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002135", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000502" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002180", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002167", "pred" : "is_a", @@ -58061,10 +55304,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002456", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000397", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000499", "pred" : "is_a", @@ -58077,10 +55316,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001223", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000954", "pred" : "is_a", @@ -58089,10 +55324,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002336", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001210", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002039", "pred" : "is_a", @@ -58101,26 +55332,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001377", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001393" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000527", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001489", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001093", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002077", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001476", "pred" : "is_a", @@ -58133,10 +55356,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000620", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0030001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000371", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001509", "pred" : "is_a", @@ -58145,30 +55364,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001330", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000043" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000767", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001311", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000499" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000514", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001379", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001103", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001080", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001851", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -58193,10 +55396,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001582", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001547", "pred" : "is_a", @@ -58205,10 +55404,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001255", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000953" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000398", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002360", "pred" : "is_a", @@ -58229,18 +55424,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001846", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000408", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000012", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000265", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015014", "pred" : "is_a", @@ -58257,10 +55440,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001561", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001564" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045076", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001519", "pred" : "is_a", @@ -58277,10 +55456,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001268", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000952" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000145", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000049", "pred" : "is_a", @@ -58293,18 +55468,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001370", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002012" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002061", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000278", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000981", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", @@ -58317,10 +55480,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000158", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045050", "pred" : "is_a", @@ -58333,10 +55492,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001779" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000038", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001581", "pred" : "is_a", @@ -58349,10 +55504,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001604", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001008", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002431", "pred" : "is_a", @@ -58361,10 +55512,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001844", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000766", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002273", "pred" : "is_a", @@ -58381,50 +55528,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001999" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000886", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002422", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000490", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000250", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000899", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002203", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002201" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001128", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000909", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002314", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000130", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000873", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002292", "pred" : "is_a", @@ -58433,26 +55548,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002182", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000010", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000263", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001831", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000753", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000143", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002311", "pred" : "is_a", @@ -58477,22 +55576,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002435", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000740", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000419", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002389", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000631" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001102", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000570", "pred" : "is_a", @@ -58513,34 +55600,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002154", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001785" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000539", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005010", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001222", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001477", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000659", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001115", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000526", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002099", "pred" : "is_a", @@ -58557,22 +55624,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001536", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001092", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001235", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001427", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001842" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000779", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015017", "pred" : "is_a", @@ -58621,10 +55676,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000970", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001221", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0010003", "pred" : "is_a", @@ -58641,10 +55692,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001267", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000952" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000144", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000921", "pred" : "is_a", @@ -58661,10 +55708,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045089", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045088" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000980", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001780", "pred" : "is_a", @@ -58673,14 +55716,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001802", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000993", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000157", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001817", "pred" : "is_a", @@ -58689,22 +55724,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001475", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000860", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045077", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001715", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000024", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001350", "pred" : "is_a", @@ -58745,14 +55768,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001430", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/PATO_0002212" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001430", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002324", "pred" : "is_a", @@ -58778,13 +55801,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002076" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045084", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" + "sub" : "http://purl.obolibrary.org/obo/PATO_0045077", + "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045071", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045084", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001699", "pred" : "is_a", @@ -58805,10 +55832,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001412", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001184", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001555", "pred" : "is_a", @@ -58837,10 +55860,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002280", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002278" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000129", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001573", "pred" : "is_a", @@ -58861,10 +55880,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001189", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001303", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002144", "pred" : "is_a", @@ -58873,38 +55888,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002481", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000978", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001636", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001634" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000845", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001661", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000712", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000009", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001331" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001528", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001519" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001331" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000018", "pred" : "is_a", @@ -58929,10 +55924,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001790", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001164" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000832", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001866", "pred" : "is_a", @@ -58953,22 +55944,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002494", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000223", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000476", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001615" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000343", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001663", "pred" : "is_a", @@ -59001,22 +55980,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045068", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000103", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000606", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001783", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000739", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001782", "pred" : "is_a", @@ -59025,10 +55992,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001770", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000236", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002229", "pred" : "is_a", @@ -59045,26 +56008,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001650", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000726", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000979", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000093", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000846", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000116", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002074", "pred" : "is_a", @@ -59081,22 +56024,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001734", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001729" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000450", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000859", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000249", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002539", "pred" : "is_a", @@ -59121,18 +56052,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001263", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001197", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002195", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001064", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000983", "pred" : "is_a", @@ -59149,10 +56072,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000956", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000274" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001207", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002032", "pred" : "is_a", @@ -59161,54 +56080,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000117" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000369", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001990", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001567", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045074", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001990", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000210", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000489", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000356", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000502" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001077", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001276", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000321" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001170", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000460", "pred" : "is_a", @@ -59217,22 +56108,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001423", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001372" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045078", + "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001787", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001591" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001063", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000982", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000970" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001183", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000955", "pred" : "is_a", @@ -59245,10 +56132,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000592", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000915" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001050", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000918", "pred" : "is_a", @@ -59262,49 +56145,21 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001326", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000581", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000977", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001758", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001757" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001748", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001758", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001757" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001746", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001744" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000724", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001660", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000844", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002632", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000068" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000857", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002141", "pred" : "is_a", @@ -59329,10 +56184,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001818", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000831", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001417", "pred" : "is_a", @@ -59341,10 +56192,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001807", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000711", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001664", "pred" : "is_a", @@ -59385,14 +56232,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001533", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000019" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000102", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000355", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001651", "pred" : "is_a", @@ -59413,10 +56252,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001783", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000049" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000235", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002344", "pred" : "is_a", @@ -59429,38 +56264,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015022", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000475", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001927", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000342", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000092", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000115", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002496", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000605", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000858", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001901", "pred" : "is_a", @@ -59469,18 +56280,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001711" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000248", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002184", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002183" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000738", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001711", "pred" : "is_a", @@ -59497,10 +56300,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002518", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000725", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0050001", "pred" : "is_a", @@ -59517,10 +56316,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002059", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001219", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045088", "pred" : "is_a", @@ -59541,10 +56336,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002033", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001294" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001076", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000617", "pred" : "is_a", @@ -59581,10 +56372,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000368", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", "pred" : "is_a", @@ -59601,22 +56388,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001089", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000222", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002268", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045075", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000125", "pred" : "is_a", @@ -59645,10 +56420,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040009", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001160", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001482", "pred" : "is_a", @@ -59657,10 +56428,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002284", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001556", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001689", "pred" : "is_a", @@ -59677,10 +56444,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001569", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002433", "pred" : "is_a", @@ -59689,18 +56452,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002502", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000821", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000118", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000691", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001755", "pred" : "is_a", @@ -59718,17 +56469,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001299" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000834", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001674", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001480", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -59785,6 +56532,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001421", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045075", + "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001357", "pred" : "is_a", @@ -59817,14 +56568,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001606", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002012" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001939", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000332", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002106", "pred" : "is_a", @@ -59837,10 +56580,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002054", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000728", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002403", "pred" : "is_a", @@ -59849,22 +56588,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045061", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000212", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001954", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001199" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000848", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000452", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001856", "pred" : "is_a", @@ -59885,18 +56612,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002399", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001079", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002387", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000389" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000835", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002072", "pred" : "is_a", @@ -59909,22 +56628,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001310" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000225", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002217", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000572", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000715", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000329", "pred" : "is_a", @@ -59941,18 +56648,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000105", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000702", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000095", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", "pred" : "is_a", @@ -59965,10 +56660,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000330", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000968", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001634", "pred" : "is_a", @@ -59977,10 +56668,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000588", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000238", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000967", "pred" : "is_a", @@ -60001,10 +56688,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0050000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000358", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001732", "pred" : "is_a", @@ -60013,54 +56696,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000985", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000973" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001040", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002034", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001173", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000478", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001161", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005024", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001066", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000322", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001209", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000598", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000465", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001208", "pred" : "is_a", @@ -60081,10 +56736,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001449", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001568", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001718", "pred" : "is_a", @@ -60121,10 +56772,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001526", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001520" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000833", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045040", "pred" : "is_a", @@ -60149,10 +56796,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000713", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001424", "pred" : "is_a", @@ -60181,10 +56824,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001405", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001404" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000966", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001422", "pred" : "is_a", @@ -60213,10 +56852,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002511", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000940", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001527", "pred" : "is_a", @@ -60226,9 +56861,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002062" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000820", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/PATO_0045076", + "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001943", "pred" : "is_a", @@ -60249,10 +56884,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001830", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000888" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000607", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002243", "pred" : "is_a", @@ -60261,10 +56892,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000597", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001892", "pred" : "is_a", @@ -60273,14 +56900,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002408", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000081", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000727", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002516", "pred" : "is_a", @@ -60293,10 +56912,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000224", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002205", "pred" : "is_a", @@ -60313,18 +56928,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001912", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000104", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001733", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001729" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000451", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0060001", "pred" : "is_a", @@ -60341,10 +56948,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000569", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000237", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015024", "pred" : "is_a", @@ -60369,22 +56972,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001972", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000571", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002404", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000094", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000847", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001810", "pred" : "is_a", @@ -60393,10 +56984,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001982", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000714", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001265", "pred" : "is_a", @@ -60409,10 +56996,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001065", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002254", "pred" : "is_a", @@ -60445,10 +57028,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000403", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000357", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000321", "pred" : "is_a", @@ -60457,54 +57036,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045084" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001078", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000477", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001566", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000211", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001198", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000515", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001046" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001336", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001589", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002353", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000961", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001185", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001060", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045022", "pred" : "is_a", @@ -60513,22 +57060,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045046", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002136" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000974", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001203", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000841", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001180", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000499", "pred" : "is_a", @@ -60549,10 +57080,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000505", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001086", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002381", "pred" : "is_a", @@ -60569,14 +57096,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002406", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002405" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001216", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001073", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001558", "pred" : "is_a", @@ -60597,10 +57116,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005022", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000351", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002219", "pred" : "is_a", @@ -60609,10 +57124,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045063", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000747", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002521", "pred" : "is_a", @@ -60625,10 +57136,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045073", "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000867", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000952", "pred" : "is_a", @@ -60649,10 +57156,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002200", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002198" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000471", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002512", "pred" : "is_a", @@ -60665,18 +57168,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002210", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001443", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000601", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000854", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", "pred" : "is_a", @@ -60693,14 +57184,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001547" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001874", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002405", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001874", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001290", "pred" : "is_a", @@ -60713,10 +57204,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002534", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000734", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002123", "pred" : "is_a", @@ -60729,10 +57216,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001432", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000721", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002391", "pred" : "is_a", @@ -60749,10 +57232,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045050", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000987", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002225", "pred" : "is_a", @@ -60761,10 +57240,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001698", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000378", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002428", "pred" : "is_a", @@ -60773,10 +57248,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002191", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002190" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000258", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001741", "pred" : "is_a", @@ -60785,18 +57256,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001552", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000138", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000508", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000005", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0020002", "pred" : "is_a", @@ -60805,38 +57264,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000186", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001812", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001491", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001749" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000485", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002165", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000352", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000748", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002108", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000623" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045077", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045023", "pred" : "is_a", @@ -60861,18 +57300,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001272", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000320" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001099", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002036", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001109", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045005", "pred" : "is_a", @@ -60881,18 +57312,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000297", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000232", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045094", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045090" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000112", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000407", "pred" : "is_a", @@ -60905,38 +57328,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001586", "pred" : "http://purl.obolibrary.org/obo/pato#towards", "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000245", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001492", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0050001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001215", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001072", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001196", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000720", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002480", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001448" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000840", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000365", "pred" : "is_a", @@ -60949,10 +57352,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000504", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000853", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000999", "pred" : "is_a", @@ -60969,10 +57368,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001435", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001108", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001296", "pred" : "is_a", @@ -60981,10 +57376,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001454", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000085" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001085", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000632", "pred" : "is_a", @@ -60993,18 +57384,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002501", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001228", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002407", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002405" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000230", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002394", "pred" : "is_a", @@ -61013,14 +57396,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000498", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000960", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000879", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002287", "pred" : "is_a", @@ -61041,18 +57416,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001688", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000483", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001367", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000350", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001657", "pred" : "is_a", @@ -61061,10 +57428,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000583", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000128" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000746", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045064", "pred" : "is_a", @@ -61077,6 +57440,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001662", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045074", + "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000951", "pred" : "is_a", @@ -61113,14 +57480,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002401", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001202", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000986", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", "pred" : "is_a", @@ -61137,30 +57496,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002237", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000590", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001887", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001886" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000866", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000733", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001754", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002535", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001754", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045084", "pred" : "is_a", @@ -61173,14 +57520,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002193", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045078", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000137", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002264", "pred" : "is_a", @@ -61189,18 +57528,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002536", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000377", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001811", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", "pred" : "is_a", @@ -61209,22 +57540,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001929", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000497", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002143", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001481" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000364", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000507", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000950", "pred" : "is_a", @@ -61253,14 +57572,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001682", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002429", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002216", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002429", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002192", "pred" : "is_a", @@ -61273,10 +57592,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000484", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002073", "pred" : "is_a", @@ -61293,10 +57608,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0001558" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000231", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002037", "pred" : "is_a", @@ -61309,10 +57620,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000759", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000111", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015001", "pred" : "is_a", @@ -61321,22 +57628,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002041" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001098", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000244", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045024", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001035" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000124", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001195", "pred" : "is_a", @@ -61349,18 +57644,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000516", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000085" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000257", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000587", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000117" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000830", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000700", "pred" : "is_a", @@ -61393,10 +57680,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001187", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001062", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001905", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", @@ -61413,26 +57696,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002524", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001182", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000600", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000921" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000603", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000856", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000593", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000019", "pred" : "is_a", @@ -61441,30 +57708,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002297", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000736", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045074", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001483", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002291" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000580", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002087", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000723", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001327", "pred" : "is_a", @@ -61473,10 +57724,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000989", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001354", "pred" : "is_a", @@ -61509,30 +57756,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001792", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001565", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000976", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001316", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000843", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001654", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001652" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000710", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002168", "pred" : "is_a", @@ -61545,30 +57776,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002149", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001788" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000091", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000114", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001459" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000354", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001993", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001992" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000247", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040020", "pred" : "is_a", @@ -61597,22 +57812,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000127", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001321", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000474", + "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", @@ -61625,10 +57832,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002175", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000341", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001576", "pred" : "is_a", @@ -61641,10 +57844,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000062", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001530" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000604", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001696", "pred" : "is_a", @@ -61658,25 +57857,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000594", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000737", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001303", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001261", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000322" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000007", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001088", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001670", "pred" : "is_a", @@ -61689,18 +57876,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001218", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001683", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001075", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002047", "pred" : "is_a", @@ -61709,10 +57888,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000608", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000136" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000221", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001510", "pred" : "is_a", @@ -61721,10 +57896,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002247", "pred" : "http://purl.obolibrary.org/obo/pato#correlates_with", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000101", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001790", "pred" : "is_a", @@ -61745,22 +57916,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002290" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000234", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045090", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001181", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001204", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002505", "pred" : "is_a", @@ -61769,10 +57928,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001186", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000962", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045034", "pred" : "is_a", @@ -61781,14 +57936,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000957", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001217", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001074", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002520", "pred" : "is_a", @@ -61797,22 +57944,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000586", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000117" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001061", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000472", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000988", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002224", "pred" : "is_a", @@ -61821,30 +57956,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001328", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001325" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000602", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000646" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000868", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001437", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001435" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045075", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000735", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001889", "pred" : "is_a", @@ -61865,14 +57984,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001793", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000722", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000975", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001994", "pred" : "is_a", @@ -61881,10 +57992,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001317", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000842", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", "pred" : "is_a", @@ -61905,10 +58012,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001304", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000855", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", "pred" : "is_a", @@ -61937,14 +58040,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001697", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000246", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000509", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002156", "pred" : "is_a", @@ -61953,18 +58048,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045093", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045090" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000126", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001322", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000486", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001577", "pred" : "is_a", @@ -61973,18 +58060,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001852", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002181" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000259", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000353", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000749", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002035", "pred" : "is_a", @@ -61993,26 +58068,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001857", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002005" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000869", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000139", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045076", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000006", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000473", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000760", "pred" : "is_a", @@ -62021,10 +58076,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001551", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000340", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001684", "pred" : "is_a", @@ -62049,14 +58100,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001339", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001087", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000220", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000627", "pred" : "is_a", @@ -62069,32 +58112,12 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001511", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000100", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000367", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000233", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000379", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000090", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000113", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" } ], - "id" : "http://purl.obolibrary.org/obo/pato.owl", + "id" : "http://purl.obolibrary.org/obo/pato.json", "meta" : { "subsets" : [ ], "xrefs" : [ ], @@ -62114,2139 +58137,10 @@ "pred" : "http://www.geneontology.org/formats/oboInOwl#saved-by", "val" : "segerdel" } ], - "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-09-05/pato.owl" + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-09-13" }, "equivalentNodesSets" : [ ], - "logicalDefinitionAxioms" : [ { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045041", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002326" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002043", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002041" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001693", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000998" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002297", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001488" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045010", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001159" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000569", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000119" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002221", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002220" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001587", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001586" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045076", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001586" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002002", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002083" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0015003", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0015002" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001714", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001334" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045032", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000299" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045082", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002381" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045085", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001310" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001583", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001227" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002298", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001488" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002245", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001035" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045074", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001227" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045069", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000152" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000595", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000918" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000596", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000918" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001696", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000273" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001584", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001227" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045052", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001595" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0015011", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0015009" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001162", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001159" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045026", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000050" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045037", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002220" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001657", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001655" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002301", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002472", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002242" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045024", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001035" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045059", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000915" ], - 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"fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045039", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002248" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000387", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000048" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045077", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001956" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0015024", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000973" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - } ], + "logicalDefinitionAxioms" : [ ], "domainRangeAxioms" : [ { "predicateId" : "http://purl.obolibrary.org/obo/pato#has_divisor_entity", "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470" ] diff --git a/pato.obo b/pato.obo index a7f436db..88602a5f 100644 --- a/pato.obo +++ b/pato.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2019-09-05 +data-version: releases/2019-09-13 date: 07:02:2018 10:27 saved-by: segerdel auto-generated-by: OBO-Edit 2.3.1 @@ -1735,7 +1735,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000004 ! mobility disjoint_from: PATO:0000300 ! immobile -relationship: is_opposite_of PATO:0000300 ! immobile +property_value: RO:0002604 PATO:0000300 [Term] id: PATO:0000300 @@ -1745,7 +1745,7 @@ subset: disposition_slim subset: value_slim synonym: "fixed" RELATED [] is_a: PATO:0000004 ! mobility -relationship: is_opposite_of PATO:0000299 ! mobile +property_value: RO:0002604 PATO:0000299 [Term] id: PATO:0000301 @@ -1766,9 +1766,7 @@ synonym: "fast speed" RELATED [] synonym: "high speed" EXACT [] is_a: PATO:0000008 ! speed is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000008 ! speed -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000304 ! decreased speed +property_value: RO:0002604 PATO:0000304 [Term] id: PATO:0000304 @@ -1779,9 +1777,7 @@ synonym: "slow" EXACT [] synonym: "slow speed" EXACT [] is_a: PATO:0000008 ! speed is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000008 ! speed -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000303 ! increased speed +property_value: RO:0002604 PATO:0000303 [Term] id: PATO:0000305 @@ -1804,7 +1800,7 @@ name: old def: "An age which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0000011 ! age -relationship: is_opposite_of PATO:0000309 ! young +property_value: RO:0002604 PATO:0000309 [Term] id: PATO:0000309 @@ -1812,7 +1808,7 @@ name: young def: "An age which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0000011 ! age -relationship: is_opposite_of PATO:0000308 ! old +property_value: RO:0002604 PATO:0000308 [Term] id: PATO:0000310 @@ -1930,7 +1926,7 @@ def: "A color brightness which is relatively low." [PATOC:MAH] subset: value_slim synonym: "dark" EXACT [] is_a: PATO:0000016 ! color brightness -relationship: is_opposite_of PATO:0000665 ! high brightness +property_value: RO:0002604 PATO:0000665 [Term] id: PATO:0000328 @@ -1940,7 +1936,7 @@ subset: value_slim synonym: "dull" RELATED [] synonym: "pale" EXACT [] is_a: PATO:0000017 ! color saturation -relationship: is_opposite_of PATO:0001229 ! high saturation +property_value: RO:0002604 PATO:0001229 [Term] id: PATO:0000329 @@ -1958,7 +1954,7 @@ subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0000060 ! spatial pattern -relationship: is_opposite_of PATO:0000440 ! regular spatial pattern +property_value: RO:0002604 PATO:0000440 [Term] id: PATO:0000331 @@ -1966,7 +1962,7 @@ name: discolored def: "A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color." [Dictionary.com:Dictionary.com] subset: value_slim is_a: PATO:0000019 ! color pattern -relationship: is_opposite_of PATO:0000336 ! colored +property_value: RO:0002604 PATO:0000336 [Term] id: PATO:0000333 @@ -1989,7 +1985,7 @@ def: "A color quality inhering in a bearer by virtue of the bearer's having colo subset: value_slim synonym: "pigmented" RELATED [] is_a: PATO:0000014 ! color -relationship: is_opposite_of PATO:0000331 ! discolored +property_value: RO:0002604 PATO:0000331 [Term] id: PATO:0000337 @@ -2039,7 +2035,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0000021 ! compatibility disjoint_from: PATO:0000345 ! incompatible -relationship: is_opposite_of PATO:0000345 ! incompatible +property_value: RO:0002604 PATO:0000345 [Term] id: PATO:0000345 @@ -2049,7 +2045,7 @@ subset: disposition_slim subset: relational_slim subset: value_slim is_a: PATO:0000021 ! compatibility -relationship: is_opposite_of PATO:0000344 ! compatible +property_value: RO:0002604 PATO:0000344 [Term] id: PATO:0000346 @@ -2152,7 +2148,7 @@ name: down def: "A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction -relationship: is_opposite_of PATO:0000370 ! up +property_value: RO:0002604 PATO:0000370 [Term] id: PATO:0000366 @@ -2184,7 +2180,7 @@ name: up def: "A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction -relationship: is_opposite_of PATO:0000365 ! down +property_value: RO:0002604 PATO:0000365 [Term] id: PATO:0000371 @@ -2210,9 +2206,7 @@ subset: value_slim synonym: "long distance" RELATED [] is_a: PATO:0000040 ! distance is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000040 ! distance -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000375 ! decreased distance +property_value: RO:0002604 PATO:0000375 [Term] id: PATO:0000375 @@ -2223,9 +2217,7 @@ subset: value_slim synonym: "short distance" RELATED [] is_a: PATO:0000040 ! distance is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000040 ! distance -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000374 ! increased distance +property_value: RO:0002604 PATO:0000374 [Term] id: PATO:0000376 @@ -2257,9 +2249,7 @@ synonym: "frequent" RELATED [] synonym: "high frequency" EXACT [] is_a: PATO:0000044 ! frequency is_a: PATO:0000912 ! increased rate -intersection_of: PATO:0000044 ! frequency -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000381 ! decreased frequency +property_value: RO:0002604 PATO:0000381 [Term] id: PATO:0000381 @@ -2271,9 +2261,7 @@ synonym: "infrequent" RELATED [] synonym: "low frequency" EXACT [] is_a: PATO:0000044 ! frequency is_a: PATO:0000911 ! decreased rate -intersection_of: PATO:0000044 ! frequency -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000380 ! increased frequency +property_value: RO:0002604 PATO:0000380 [Term] id: PATO:0000382 @@ -2313,9 +2301,7 @@ synonym: "impenetrable" RELATED [] synonym: "tough" RELATED [] is_a: PATO:0000048 ! hardness is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000048 ! hardness -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000387 ! soft +property_value: RO:0002604 PATO:0000387 [Term] id: PATO:0000387 @@ -2326,9 +2312,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0000048 ! hardness is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000048 ! hardness -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000386 ! hard +property_value: RO:0002604 PATO:0000386 [Term] id: PATO:0000388 @@ -2343,7 +2327,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0001309 ! duration -relationship: is_opposite_of PATO:0001863 ! chronic +property_value: RO:0002604 PATO:0001863 [Term] id: PATO:0000390 @@ -2429,7 +2413,7 @@ synonym: "ramified" EXACT [] synonym: "ramiform" EXACT [] is_a: PATO:0002009 ! branchiness disjoint_from: PATO:0000414 ! unbranched -relationship: is_opposite_of PATO:0000414 ! unbranched +property_value: RO:0002604 PATO:0000414 [Term] id: PATO:0000403 @@ -2454,7 +2438,7 @@ synonym: "helicoidal" RELATED [] synonym: "helix-shaped" RELATED [] synonym: "spiral" EXACT [] is_a: PATO:0001794 ! coiling -relationship: is_opposite_of PATO:0000415 ! uncoiled +property_value: RO:0002604 PATO:0000415 [Term] id: PATO:0000405 @@ -2533,7 +2517,7 @@ subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0002009 ! branchiness -relationship: is_opposite_of PATO:0000402 ! branched +property_value: RO:0002604 PATO:0000402 [Term] id: PATO:0000415 @@ -2543,7 +2527,7 @@ subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0001794 ! coiling -relationship: is_opposite_of PATO:0000404 ! coiled +property_value: RO:0002604 PATO:0000404 [Term] id: PATO:0000416 @@ -2572,7 +2556,7 @@ def: "A nutritional quality inhering in a bearer by virtue of the bearer's inabi subset: disposition_slim subset: value_slim is_a: PATO:0000056 ! trophic quality -relationship: is_opposite_of PATO:0000423 ! prototrophic +property_value: RO:0002604 PATO:0000423 [Term] id: PATO:0000423 @@ -2581,7 +2565,7 @@ def: "A nutritional quality inhering in a bearer by virtue of the bearer's abili subset: disposition_slim subset: value_slim is_a: PATO:0000056 ! trophic quality -relationship: is_opposite_of PATO:0000422 ! auxotrophic +property_value: RO:0002604 PATO:0000422 [Term] id: PATO:0000424 @@ -2602,7 +2586,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence -relationship: is_opposite_of PATO:0000428 ! sporadic +property_value: RO:0002604 PATO:0000428 [Term] id: PATO:0000428 @@ -2612,7 +2596,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence -relationship: is_opposite_of PATO:0000427 ! recurrent +property_value: RO:0002604 PATO:0000427 [Term] id: PATO:0000430 @@ -2666,7 +2650,7 @@ subset: value_slim synonym: "constant" RELATED [] synonym: "uniform" EXACT [] is_a: PATO:0001303 ! variability -relationship: is_opposite_of PATO:0001227 ! variant +property_value: RO:0002604 PATO:0001227 [Term] id: PATO:0000439 @@ -2681,7 +2665,7 @@ subset: mpath_slim subset: relational_slim subset: value_slim is_a: PATO:0000060 ! spatial pattern -relationship: is_opposite_of PATO:0000330 ! irregular spatial pattern +property_value: RO:0002604 PATO:0000330 [Term] id: PATO:0000441 @@ -2810,7 +2794,7 @@ synonym: "atypia" RELATED [] synonym: "atypical" RELATED [] synonym: "defective" RELATED [] is_a: PATO:0000069 ! deviation(from_normal) -relationship: is_opposite_of PATO:0000461 ! normal +property_value: RO:0002604 PATO:0000461 [Term] id: PATO:0000461 @@ -2821,7 +2805,7 @@ subset: mpath_slim subset: value_slim synonym: "average" RELATED [] is_a: PATO:0000068 ! qualitative -relationship: is_opposite_of PATO:0000460 ! abnormal +property_value: RO:0002604 PATO:0000460 [Term] id: PATO:0000462 @@ -2836,9 +2820,9 @@ synonym: "absence" EXACT [] synonym: "absent from organism" EXACT [] is_a: PATO:0000070 ! amount disjoint_from: PATO:0000467 ! present -relationship: is_opposite_of PATO:0000467 ! present relationship: reciprocal_of PATO:0001558 ! lacking processual parts relationship: reciprocal_of PATO:0002000 ! lacks all parts of type +property_value: RO:0002604 PATO:0000467 [Term] id: PATO:0000463 @@ -2848,7 +2832,7 @@ subset: mpath_slim subset: value_slim synonym: "distinct" RELATED [] is_a: PATO:0001998 ! conspicuousness -relationship: is_opposite_of PATO:0000464 ! inconspicuous +property_value: RO:0002604 PATO:0000464 [Term] id: PATO:0000464 @@ -2858,7 +2842,7 @@ subset: mpath_slim subset: value_slim synonym: "faint" RELATED [] is_a: PATO:0001998 ! conspicuousness -relationship: is_opposite_of PATO:0000463 ! conspicuous +property_value: RO:0002604 PATO:0000463 [Term] id: PATO:0000465 @@ -2878,7 +2862,7 @@ subset: absent_slim subset: value_slim synonym: "present in organism" RELATED [] is_a: PATO:0000070 ! amount -relationship: is_opposite_of PATO:0000462 ! absent +property_value: RO:0002604 PATO:0000462 [Term] id: PATO:0000469 @@ -2899,9 +2883,7 @@ synonym: "present in greater numbers in organism" EXACT [] synonym: "supernumerary" EXACT [] is_a: PATO:0000467 ! present is_a: PATO:0002300 ! increased quality -intersection_of: PATO:0000070 ! amount -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001997 ! decreased amount +property_value: RO:0002604 PATO:0001997 [Term] id: PATO:0000471 @@ -2993,7 +2975,7 @@ subset: value_slim synonym: "responsive" EXACT [] is_a: PATO:0000077 ! response to disjoint_from: PATO:0000488 ! unresponsive to -relationship: is_opposite_of PATO:0000488 ! unresponsive to +property_value: RO:0002604 PATO:0000488 [Term] id: PATO:0000488 @@ -3004,7 +2986,7 @@ subset: relational_slim subset: value_slim synonym: "unresponsive" EXACT [] is_a: PATO:0000077 ! response to -relationship: is_opposite_of PATO:0000487 ! responsive to +property_value: RO:0002604 PATO:0000487 [Term] id: PATO:0000489 @@ -3065,9 +3047,7 @@ synonym: "prolonged period" RELATED [] synonym: "slow time" RELATED [] is_a: PATO:0001309 ! duration is_a: PATO:0002304 ! increased process quality -intersection_of: PATO:0001309 ! duration -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000499 ! decreased duration +property_value: RO:0002604 PATO:0000499 [Term] id: PATO:0000499 @@ -3082,9 +3062,7 @@ synonym: "low period" EXACT [] synonym: "shortened period" EXACT [] is_a: PATO:0001309 ! duration is_a: PATO:0002302 ! decreased process quality -intersection_of: PATO:0001309 ! duration -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000498 ! increased duration +property_value: RO:0002604 PATO:0000498 [Term] id: PATO:0000500 @@ -3121,7 +3099,7 @@ name: arrhythmic def: "A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm." [PATOC:GVG] subset: value_slim is_a: PATO:0000078 ! rhythm quality -relationship: is_opposite_of PATO:0000505 ! rhythmic +property_value: RO:0002604 PATO:0000505 [Term] id: PATO:0000505 @@ -3129,7 +3107,7 @@ name: rhythmic def: "A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm." [PATOC:GVG] subset: value_slim is_a: PATO:0000078 ! rhythm quality -relationship: is_opposite_of PATO:0000504 ! arrhythmic +property_value: RO:0002604 PATO:0000504 [Term] id: PATO:0000506 @@ -3176,7 +3154,7 @@ subset: value_slim synonym: "insensitive" EXACT [] synonym: "resistant" RELATED [] is_a: PATO:0000085 ! sensitivity toward -relationship: is_opposite_of PATO:0000516 ! sensitive toward +property_value: RO:0002604 PATO:0000516 [Term] id: PATO:0000514 @@ -3203,7 +3181,7 @@ subset: relational_slim subset: value_slim synonym: "sensitive" EXACT [] is_a: PATO:0000085 ! sensitivity toward -relationship: is_opposite_of PATO:0000513 ! insensitive toward +property_value: RO:0002604 PATO:0000513 [Term] id: PATO:0000517 @@ -3359,7 +3337,7 @@ subset: value_slim synonym: "photoresistant" RELATED [] is_a: PATO:0000927 ! photosensitivity disjoint_from: PATO:0000547 ! photosensitive -relationship: is_opposite_of PATO:0000547 ! photosensitive +property_value: RO:0002604 PATO:0000547 [Term] id: PATO:0000547 @@ -3368,7 +3346,7 @@ def: "A photosensitivity quality inhering in a bearer by virtue of the bearer's subset: disposition_slim subset: value_slim is_a: PATO:0000927 ! photosensitivity -relationship: is_opposite_of PATO:0000546 ! photoinsensitive +property_value: RO:0002604 PATO:0000546 [Term] id: PATO:0000548 @@ -3485,9 +3463,7 @@ subset: value_slim synonym: "short" RELATED [] is_a: PATO:0000119 ! height is_a: PATO:0000587 ! decreased size -intersection_of: PATO:0000119 ! height -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000570 ! increased height +property_value: RO:0002604 PATO:0000570 [Term] id: PATO:0000570 @@ -3497,9 +3473,7 @@ subset: value_slim synonym: "tall" RELATED [] is_a: PATO:0000119 ! height is_a: PATO:0000586 ! increased size -intersection_of: PATO:0000119 ! height -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000569 ! decreased height +property_value: RO:0002604 PATO:0000569 [Term] id: PATO:0000571 @@ -3519,9 +3493,7 @@ subset: value_slim synonym: "long" EXACT [] is_a: PATO:0000122 ! length is_a: PATO:0000586 ! increased size -intersection_of: PATO:0000122 ! length -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000574 ! decreased length +property_value: RO:0002604 PATO:0000574 [Term] id: PATO:0000574 @@ -3533,9 +3505,7 @@ synonym: "shortened" RELATED [] synonym: "stubby" RELATED [] is_a: PATO:0000122 ! length is_a: PATO:0000587 ! decreased size -intersection_of: PATO:0000122 ! length -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000573 ! increased length +property_value: RO:0002604 PATO:0000573 [Term] id: PATO:0000575 @@ -3571,9 +3541,7 @@ synonym: "heavy" EXACT [] synonym: "high weight" EXACT [] is_a: PATO:0000128 ! weight is_a: PATO:0002245 ! increased force -intersection_of: PATO:0000128 ! weight -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000583 ! decreased weight +property_value: RO:0002604 PATO:0000583 [Term] id: PATO:0000583 @@ -3584,9 +3552,7 @@ synonym: "light weight" EXACT [] synonym: "low weight" EXACT [] is_a: PATO:0000128 ! weight is_a: PATO:0002246 ! decreased force -intersection_of: PATO:0000128 ! weight -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000582 ! increased weight +property_value: RO:0002604 PATO:0000582 [Term] id: PATO:0000584 @@ -3596,7 +3562,7 @@ subset: mpath_slim subset: value_slim synonym: "hypertrophy" NARROW [] is_a: PATO:0000595 ! increased volume -relationship: is_opposite_of PATO:0000585 ! hypotrophic +property_value: RO:0002604 PATO:0000585 [Term] id: PATO:0000585 @@ -3607,7 +3573,7 @@ subset: mpath_slim subset: value_slim synonym: "shrunken" EXACT [] is_a: PATO:0000596 ! decreased volume -relationship: is_opposite_of PATO:0000584 ! hypertrophic +property_value: RO:0002604 PATO:0000584 [Term] id: PATO:0000586 @@ -3622,9 +3588,7 @@ synonym: "great" RELATED [] synonym: "large" RELATED [] is_a: PATO:0000117 ! size is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000117 ! size -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000587 ! decreased size +property_value: RO:0002604 PATO:0000587 [Term] id: PATO:0000587 @@ -3638,9 +3602,7 @@ synonym: "tiny" RELATED [] synonym: "underdeveloped" NARROW [] is_a: PATO:0000117 ! size is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000117 ! size -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000586 ! increased size +property_value: RO:0002604 PATO:0000586 [Term] id: PATO:0000588 @@ -3672,9 +3634,7 @@ synonym: "thick" RELATED [] synonym: "thickened" EXACT [] is_a: PATO:0000586 ! increased size is_a: PATO:0000915 ! thickness -intersection_of: PATO:0000915 ! thickness -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000592 ! decreased thickness +property_value: RO:0002604 PATO:0000592 [Term] id: PATO:0000592 @@ -3687,9 +3647,7 @@ synonym: "slender" RELATED [] synonym: "thin" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0000915 ! thickness -intersection_of: PATO:0000915 ! thickness -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000591 ! increased thickness +property_value: RO:0002604 PATO:0000591 [Term] id: PATO:0000593 @@ -3711,9 +3669,7 @@ synonym: "high volume" EXACT [] synonym: "large volume" RELATED [] is_a: PATO:0000586 ! increased size is_a: PATO:0000918 ! volume -intersection_of: PATO:0000918 ! volume -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000596 ! decreased volume +property_value: RO:0002604 PATO:0000596 [Term] id: PATO:0000596 @@ -3725,9 +3681,7 @@ synonym: "low volume" EXACT [] synonym: "small volume" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0000918 ! volume -intersection_of: PATO:0000918 ! volume -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000595 ! increased volume +property_value: RO:0002604 PATO:0000595 [Term] id: PATO:0000597 @@ -3747,9 +3701,7 @@ subset: value_slim synonym: "narrow" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0000921 ! width -intersection_of: PATO:0000921 ! width -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000600 ! increased width +property_value: RO:0002604 PATO:0000600 [Term] id: PATO:0000600 @@ -3761,9 +3713,7 @@ synonym: "wide" RELATED [] synonym: "wide/broad" RELATED [] is_a: PATO:0000586 ! increased size is_a: PATO:0000921 ! width -intersection_of: PATO:0000921 ! width -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000599 ! decreased width +property_value: RO:0002604 PATO:0000599 [Term] id: PATO:0000601 @@ -3810,7 +3760,7 @@ subset: value_slim synonym: "blocked" RELATED [] is_a: PATO:0000136 ! closure disjoint_from: PATO:0000610 ! open -relationship: is_opposite_of PATO:0000610 ! open +property_value: RO:0002604 PATO:0000610 [Term] id: PATO:0000609 @@ -3825,7 +3775,7 @@ name: open def: "A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view." [answers.com:answers.com] subset: value_slim is_a: PATO:0000136 ! closure -relationship: is_opposite_of PATO:0000608 ! closed +property_value: RO:0002604 PATO:0000608 [Term] id: PATO:0000611 @@ -3843,7 +3793,7 @@ name: disoriented def: "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation." [PATOC:GVG] subset: value_slim is_a: PATO:0000330 ! irregular spatial pattern -relationship: is_opposite_of PATO:0000614 ! oriented +property_value: RO:0002604 PATO:0000614 [Term] id: PATO:0000614 @@ -3851,7 +3801,7 @@ name: oriented def: "A pattern where all the repeated elements are oriented in the same direction." [PATOC:MAH] subset: value_slim is_a: PATO:0000440 ! regular spatial pattern -relationship: is_opposite_of PATO:0000613 ! disoriented +property_value: RO:0002604 PATO:0000613 [Term] id: PATO:0000615 @@ -3894,7 +3844,7 @@ name: crowded def: "A positional quality inhering in a bearer by virtue of the bearer's being overfilled." [WordNet:WordNet] subset: value_slim is_a: PATO:0000140 ! position -relationship: is_opposite_of PATO:0000633 ! uncrowded +property_value: RO:0002604 PATO:0000633 [Term] id: PATO:0000620 @@ -4012,7 +3962,7 @@ name: uncrowded def: "A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled." [PATOC:GVG] subset: value_slim is_a: PATO:0000060 ! spatial pattern -relationship: is_opposite_of PATO:0000619 ! crowded +property_value: RO:0002604 PATO:0000619 [Term] id: PATO:0000634 @@ -4063,7 +4013,7 @@ is_a: PATO:0002037 ! degeneration disjoint_from: PATO:0001623 ! atrophied disjoint_from: PATO:0002038 ! non-degenerate relationship: has_part PATO:0000585 ! hypotrophic -relationship: is_opposite_of PATO:0002038 ! non-degenerate +property_value: RO:0002604 PATO:0002038 [Term] id: PATO:0000640 @@ -4092,7 +4042,7 @@ synonym: "fused to" EXACT [] synonym: "joined with" RELATED [] synonym: "merged with" RELATED [] is_a: PATO:0000141 ! structure -relationship: is_opposite_of PATO:0000651 ! unfused from +property_value: RO:0002604 PATO:0000651 [Term] id: PATO:0000643 @@ -4112,7 +4062,7 @@ subset: value_slim synonym: "hyperplasia" EXACT [] synonym: "overdeveloped" RELATED [] is_a: PATO:0000586 ! increased size -relationship: is_opposite_of PATO:0000645 ! hypoplastic +property_value: RO:0002604 PATO:0000645 [Term] id: PATO:0000645 @@ -4125,7 +4075,7 @@ synonym: "hypoplasia" EXACT [] synonym: "underdeveloped" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0002290 ! aplastic/hypoplastic -relationship: is_opposite_of PATO:0000644 ! hyperplastic +property_value: RO:0002604 PATO:0000644 [Term] id: PATO:0000646 @@ -4160,7 +4110,7 @@ subset: relational_slim subset: value_slim synonym: "unfused" EXACT [] is_a: PATO:0000141 ! structure -relationship: is_opposite_of PATO:0000642 ! fused with +property_value: RO:0002604 PATO:0000642 [Term] id: PATO:0000652 @@ -4234,7 +4184,7 @@ def: "A color brightness which is relatively high." [PATOC:MAH] subset: value_slim synonym: "light" EXACT [] is_a: PATO:0000016 ! color brightness -relationship: is_opposite_of PATO:0000327 ! low brightness +property_value: RO:0002604 PATO:0000327 [Term] id: PATO:0000666 @@ -4342,7 +4292,7 @@ name: asynchronous def: "A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase." [WordNet:WordNet] subset: value_slim is_a: PATO:0000057 ! occurrence -relationship: is_opposite_of PATO:0000695 ! synchronous +property_value: RO:0002604 PATO:0000695 [Term] id: PATO:0000689 @@ -4352,7 +4302,7 @@ def: "A quality of a single process inhering in a bearer by virtue of the bearer subset: value_slim synonym: "uninterrupted" EXACT [] is_a: PATO:0000057 ! occurrence -relationship: is_opposite_of PATO:0000690 ! discontinuous +property_value: RO:0002604 PATO:0000690 [Term] id: PATO:0000690 @@ -4363,7 +4313,7 @@ subset: value_slim synonym: "intermittent" RELATED [] synonym: "interrupted" EXACT [] is_a: PATO:0000057 ! occurrence -relationship: is_opposite_of PATO:0000689 ! continuous +property_value: RO:0002604 PATO:0000689 [Term] id: PATO:0000692 @@ -4395,7 +4345,7 @@ name: synchronous def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase." [PATOC:GVG] subset: value_slim is_a: PATO:0000057 ! occurrence -relationship: is_opposite_of PATO:0000688 ! asynchronous +property_value: RO:0002604 PATO:0000688 [Term] id: PATO:0000696 @@ -4426,7 +4376,7 @@ subset: mpath_slim subset: value_slim synonym: "coarse" EXACT [] is_a: PATO:0000150 ! texture -relationship: is_opposite_of PATO:0000701 ! smooth +property_value: RO:0002604 PATO:0000701 [Term] id: PATO:0000701 @@ -4435,7 +4385,7 @@ def: "A texture quality inhering in a bearer by virtue of the bearer's processin subset: mpath_slim subset: value_slim is_a: PATO:0000150 ! texture -relationship: is_opposite_of PATO:0000700 ! rough +property_value: RO:0002604 PATO:0000700 [Term] id: PATO:0000702 @@ -4468,9 +4418,7 @@ subset: value_slim synonym: "high threshold" EXACT [] is_a: PATO:0000152 ! threshold is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000152 ! threshold -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000708 ! decreased threshold +property_value: RO:0002604 PATO:0000708 [Term] id: PATO:0000708 @@ -4483,9 +4431,7 @@ subset: value_slim synonym: "low threshold" EXACT [] is_a: PATO:0000152 ! threshold is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000152 ! threshold -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000706 ! increased threshold +property_value: RO:0002604 PATO:0000706 [Term] id: PATO:0000710 @@ -4725,7 +4671,7 @@ def: "A balance quality inhering in a bearer by virtue of the bearer's having ba subset: value_slim is_a: PATO:0000185 ! balance disjoint_from: PATO:0000758 ! unbalanced -relationship: is_opposite_of PATO:0000758 ! unbalanced +property_value: RO:0002604 PATO:0000758 [Term] id: PATO:0000758 @@ -4733,7 +4679,7 @@ name: unbalanced def: "A balance quality inhering in a bearer by virtue of the bearer's lacking balance." [PATOC:GVG] subset: value_slim is_a: PATO:0000185 ! balance -relationship: is_opposite_of PATO:0000757 ! balanced +property_value: RO:0002604 PATO:0000757 [Term] id: PATO:0000759 @@ -4752,9 +4698,7 @@ subset: value_slim synonym: "hyperactive" EXACT [] is_a: PATO:0001707 ! behavioural active is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001707 ! behavioural active -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000761 ! decreased behavioural activity +property_value: RO:0002604 PATO:0000761 [Term] id: PATO:0000761 @@ -4764,9 +4708,7 @@ subset: value_slim synonym: "hypoactive" EXACT [] is_a: PATO:0001707 ! behavioural active is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001707 ! behavioural active -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000760 ! increased behavioural activity +property_value: RO:0002604 PATO:0000760 [Term] id: PATO:0000762 @@ -4831,7 +4773,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000188 ! coordination disjoint_from: PATO:0000770 ! uncoordinated -relationship: is_opposite_of PATO:0000770 ! uncoordinated +property_value: RO:0002604 PATO:0000770 [Term] id: PATO:0000770 @@ -4840,7 +4782,7 @@ def: "A coordination quality of inhering in a bearer by virtue of the bearer's l subset: disposition_slim subset: value_slim is_a: PATO:0000188 ! coordination -relationship: is_opposite_of PATO:0000769 ! coordinated +property_value: RO:0002604 PATO:0000769 [Term] id: PATO:0000771 @@ -5448,7 +5390,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000277 ! female fertility disjoint_from: PATO:0000892 ! female sterile -relationship: is_opposite_of PATO:0000892 ! female sterile +property_value: RO:0002604 PATO:0000892 [Term] id: PATO:0000889 @@ -5464,7 +5406,7 @@ subset: value_slim synonym: "male infertile" RELATED [] is_a: PATO:0000956 ! sterile disjoint_from: PATO:0000891 ! male fertile -relationship: is_opposite_of PATO:0000891 ! male fertile +property_value: RO:0002604 PATO:0000891 [Term] id: PATO:0000891 @@ -5473,7 +5415,7 @@ def: "A male fertility quality inhering in a male by virtue of the bearer's bein subset: disposition_slim subset: value_slim is_a: PATO:0000279 ! male fertility -relationship: is_opposite_of PATO:0000890 ! male sterile +property_value: RO:0002604 PATO:0000890 [Term] id: PATO:0000892 @@ -5483,7 +5425,7 @@ subset: disposition_slim subset: value_slim synonym: "female infertile" RELATED [] is_a: PATO:0000956 ! sterile -relationship: is_opposite_of PATO:0000888 ! female fertile +property_value: RO:0002604 PATO:0000888 [Term] id: PATO:0000893 @@ -5588,9 +5530,7 @@ subset: value_slim synonym: "slow rate" EXACT [] is_a: PATO:0000161 ! rate is_a: PATO:0002302 ! decreased process quality -intersection_of: PATO:0000161 ! rate -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000912 ! increased rate +property_value: RO:0002604 PATO:0000912 [Term] id: PATO:0000912 @@ -5602,9 +5542,7 @@ synonym: "fast rate" EXACT [] synonym: "high rate" EXACT [] is_a: PATO:0000161 ! rate is_a: PATO:0002304 ! increased process quality -intersection_of: PATO:0000161 ! rate -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000911 ! decreased rate +property_value: RO:0002604 PATO:0000911 [Term] id: PATO:0000913 @@ -5752,7 +5690,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0002264 ! organization quality disjoint_from: PATO:0000938 ! organized -relationship: is_opposite_of PATO:0000938 ! organized +property_value: RO:0002604 PATO:0000938 [Term] id: PATO:0000938 @@ -5761,7 +5699,7 @@ def: "A structural quality inhering in a bearer by virtue of the bearer's exhibi subset: mpath_slim subset: value_slim is_a: PATO:0002264 ! organization quality -relationship: is_opposite_of PATO:0000937 ! disorganized +property_value: RO:0002604 PATO:0000937 [Term] id: PATO:0000939 @@ -5892,7 +5830,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000274 ! fertility disjoint_from: PATO:0000956 ! sterile -relationship: is_opposite_of PATO:0000956 ! sterile +property_value: RO:0002604 PATO:0000956 [Term] id: PATO:0000956 @@ -5901,7 +5839,7 @@ def: "A fertility quality inhering in a bearer by virtue of the bearer's being i subset: disposition_slim subset: value_slim is_a: PATO:0000274 ! fertility -relationship: is_opposite_of PATO:0000955 ! fertile +property_value: RO:0002604 PATO:0000955 [Term] id: PATO:0000957 @@ -5945,7 +5883,7 @@ synonym: "clouding" RELATED [] synonym: "cloudy" RELATED [] synonym: "non-transparent" EXACT [] is_a: PATO:0000957 ! opacity -relationship: is_opposite_of PATO:0000964 ! transparent +property_value: RO:0002604 PATO:0000964 [Term] id: PATO:0000964 @@ -5956,7 +5894,7 @@ subset: value_slim synonym: "clear" EXACT [] synonym: "hyaline" EXACT [] is_a: PATO:0000957 ! opacity -relationship: is_opposite_of PATO:0000963 ! opaque +property_value: RO:0002604 PATO:0000963 [Term] id: PATO:0000965 @@ -6077,7 +6015,7 @@ subset: value_slim synonym: "porous" RELATED [] is_a: PATO:0000970 ! permeability disjoint_from: PATO:0000983 ! impermeable -relationship: is_opposite_of PATO:0000983 ! impermeable +property_value: RO:0002604 PATO:0000983 [Term] id: PATO:0000983 @@ -6086,7 +6024,7 @@ def: "A permeability quality inhering in a bearer by virtue of the bearer's bein subset: disposition_slim subset: value_slim is_a: PATO:0000970 ! permeability -relationship: is_opposite_of PATO:0000982 ! permeable +property_value: RO:0002604 PATO:0000982 [Term] id: PATO:0000984 @@ -6096,7 +6034,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000973 ! porosity disjoint_from: PATO:0000985 ! non-porous -relationship: is_opposite_of PATO:0000985 ! non-porous +property_value: RO:0002604 PATO:0000985 [Term] id: PATO:0000985 @@ -6105,7 +6043,7 @@ def: "A porosity quality inhering in a bearer by virtue of the bearer's being in subset: disposition_slim subset: value_slim is_a: PATO:0000973 ! porosity -relationship: is_opposite_of PATO:0000984 ! porous +property_value: RO:0002604 PATO:0000984 [Term] id: PATO:0000986 @@ -6453,7 +6391,7 @@ subset: disposition_slim subset: relational_slim synonym: "susceptibility" EXACT [] is_a: PATO:0000085 ! sensitivity toward -relationship: is_opposite_of PATO:0001046 ! resistance to +property_value: RO:0002604 PATO:0001046 [Term] id: PATO:0001044 @@ -6475,7 +6413,7 @@ subset: relational_slim subset: scalar_slim synonym: "resistance" EXACT [] is_a: PATO:0001995 ! organismal quality -relationship: is_opposite_of PATO:0001043 ! susceptibility toward +property_value: RO:0002604 PATO:0001043 [Term] id: PATO:0001047 @@ -7027,7 +6965,7 @@ subset: value_slim synonym: "susceptible" EXACT [] is_a: PATO:0001043 ! susceptibility toward disjoint_from: PATO:0001153 ! insusceptible toward -relationship: is_opposite_of PATO:0001153 ! insusceptible toward +property_value: RO:0002604 PATO:0001153 [Term] id: PATO:0001153 @@ -7038,7 +6976,7 @@ subset: relational_slim subset: value_slim synonym: "insusceptible" EXACT [] is_a: PATO:0001043 ! susceptibility toward -relationship: is_opposite_of PATO:0001152 ! susceptible toward +property_value: RO:0002604 PATO:0001152 [Term] id: PATO:0001154 @@ -7046,7 +6984,7 @@ name: elongated def: "A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width." [WordNet:WordNet] subset: value_slim is_a: PATO:0000052 ! shape -relationship: is_opposite_of PATO:0002364 ! shortened +property_value: RO:0002604 PATO:0002364 [Term] id: PATO:0001155 @@ -7098,9 +7036,7 @@ subset: value_slim synonym: "high concentration" EXACT [] is_a: PATO:0001159 ! concentrated is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001159 ! concentrated -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001163 ! decreased concentration +property_value: RO:0002604 PATO:0001163 [Term] id: PATO:0001163 @@ -7111,9 +7047,7 @@ subset: value_slim synonym: "low concentration" EXACT [] is_a: PATO:0001159 ! concentrated is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001159 ! concentrated -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001162 ! increased concentration +property_value: RO:0002604 PATO:0001162 [Term] id: PATO:0001164 @@ -7140,7 +7074,7 @@ def: "A structural quality inhering in a bearer by virtue of the bearer being ha subset: value_slim is_a: PATO:0001020 ! damage disjoint_from: PATO:0001168 ! undamaged -relationship: is_opposite_of PATO:0001168 ! undamaged +property_value: RO:0002604 PATO:0001168 [Term] id: PATO:0001168 @@ -7148,7 +7082,7 @@ name: undamaged def: "A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled." [WordNet:WordNet] subset: value_slim is_a: PATO:0001020 ! damage -relationship: is_opposite_of PATO:0001167 ! damaged +property_value: RO:0002604 PATO:0001167 [Term] id: PATO:0001170 @@ -7164,7 +7098,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0001031 ! elasticity disjoint_from: PATO:0001172 ! inelastic -relationship: is_opposite_of PATO:0001172 ! inelastic +property_value: RO:0002604 PATO:0001172 [Term] id: PATO:0001172 @@ -7174,7 +7108,7 @@ subset: disposition_slim subset: mpath_slim subset: value_slim is_a: PATO:0001031 ! elasticity -relationship: is_opposite_of PATO:0001171 ! elastic +property_value: RO:0002604 PATO:0001171 [Term] id: PATO:0001173 @@ -7305,9 +7239,7 @@ synonym: "hyperresponsive" EXACT [] synonym: "increased responsivity" EXACT [] is_a: PATO:0000487 ! responsive to is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000487 ! responsive to -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001194 ! hyporesponsive to +property_value: RO:0002604 PATO:0001194 [Term] id: PATO:0001193 @@ -7330,9 +7262,7 @@ synonym: "decreased responsivity" EXACT [] synonym: "hyporesponsive" EXACT [] is_a: PATO:0000487 ! responsive to is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000487 ! responsive to -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001192 ! hyperresponsive to +property_value: RO:0002604 PATO:0001192 [Term] id: PATO:0001195 @@ -7414,7 +7344,7 @@ subset: mpath_slim subset: value_slim synonym: "serrate" EXACT [] is_a: PATO:0001976 ! serration -relationship: is_opposite_of PATO:0001975 ! unserrated +property_value: RO:0002604 PATO:0001975 [Term] id: PATO:0001207 @@ -7522,7 +7452,7 @@ subset: relational_slim subset: value_slim synonym: "variable" EXACT [] is_a: PATO:0001303 ! variability -relationship: is_opposite_of PATO:0000438 ! invariant +property_value: RO:0002604 PATO:0000438 [Term] id: PATO:0001228 @@ -7537,7 +7467,7 @@ subset: value_slim synonym: "bright" EXACT [] synonym: "vivid" RELATED [] is_a: PATO:0000017 ! color saturation -relationship: is_opposite_of PATO:0000328 ! low saturation +property_value: RO:0002604 PATO:0000328 [Term] id: PATO:0001230 @@ -7567,7 +7497,7 @@ synonym: "dorsal" EXACT [] synonym: "posterior_to (human torso)" EXACT [] synonym: "superior_to (human head)" EXACT [] is_a: PATO:0000140 ! position -relationship: is_opposite_of PATO:0001234 ! distal to +property_value: RO:0002604 PATO:0001234 [Term] id: PATO:0001234 @@ -7578,7 +7508,7 @@ subset: relational_slim subset: value_slim synonym: "distal" EXACT [] is_a: PATO:0000140 ! position -relationship: is_opposite_of PATO:0001233 ! dorsal to +property_value: RO:0002604 PATO:0001233 [Term] id: PATO:0001235 @@ -7597,6 +7527,7 @@ synonym: "quality of occurrent" EXACT [] synonym: "quality of process" EXACT [] synonym: "relational quality of occurrent" EXACT [] is_a: PATO:0000001 ! quality +disjoint_from: PATO:0001241 ! physical object quality [Term] id: PATO:0001241 @@ -8092,7 +8023,7 @@ name: variability def: "A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing." [Dictionary:http\://dictionary.reference.com/] subset: attribute_slim synonym: "variability of a physical quality" RELATED [] -is_a: PATO:0001236 ! process quality +is_a: PATO:0000001 ! quality [Term] id: PATO:0001304 @@ -8112,9 +8043,7 @@ synonym: "high temperature" EXACT [] synonym: "hot" EXACT [] is_a: PATO:0000146 ! temperature is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000146 ! temperature -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001306 ! decreased temperature +property_value: RO:0002604 PATO:0001306 [Term] id: PATO:0001306 @@ -8126,9 +8055,7 @@ synonym: "cold" EXACT [] synonym: "low temperature" EXACT [] is_a: PATO:0000146 ! temperature is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000146 ! temperature -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001305 ! increased temperature +property_value: RO:0002604 PATO:0001305 [Term] id: PATO:0001307 @@ -8137,11 +8064,8 @@ def: "A variability of temperature which is relatively low." [PATOC:GVG] subset: value_slim synonym: "low variability of temperature" EXACT [] is_a: PATO:0001314 ! variant temperature -is_a: PATO:0002302 ! decreased process quality -is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001314 ! variant temperature -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001308 ! increased variability of temperature +is_a: PATO:0002301 ! decreased quality +property_value: RO:0002604 PATO:0001308 [Term] id: PATO:0001308 @@ -8150,11 +8074,8 @@ def: "A variability of temperature which is relatively high." [PATOC:GVG] subset: value_slim synonym: "high variability of temperature" EXACT [] is_a: PATO:0001314 ! variant temperature -is_a: PATO:0002304 ! increased process quality -is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001314 ! variant temperature -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001307 ! decreased variability of temperature +is_a: PATO:0002300 ! increased quality +property_value: RO:0002604 PATO:0001307 [Term] id: PATO:0001309 @@ -8182,9 +8103,7 @@ def: "A duration of temperature which is lesser relative to the normal or averag subset: value_slim is_a: PATO:0000499 ! decreased duration is_a: PATO:0001310 ! duration of temperature -intersection_of: PATO:0001310 ! duration of temperature -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001312 ! increased duration of temperature +property_value: RO:0002604 PATO:0001312 [Term] id: PATO:0001312 @@ -8194,9 +8113,7 @@ subset: value_slim synonym: "high duration of temperature" EXACT [] is_a: PATO:0000498 ! increased duration is_a: PATO:0001310 ! duration of temperature -intersection_of: PATO:0001310 ! duration of temperature -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001311 ! decreased duration of temperature +property_value: RO:0002604 PATO:0001311 [Term] id: PATO:0001313 @@ -8204,7 +8121,7 @@ name: invariant temperature def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature." [PATO:GVG] subset: relational_slim is_a: PATO:0001304 ! variability of temperature -relationship: is_opposite_of PATO:0001314 ! variant temperature +property_value: RO:0002604 PATO:0001314 [Term] id: PATO:0001314 @@ -8212,7 +8129,7 @@ name: variant temperature def: "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature." [PATO:GVG] subset: value_slim is_a: PATO:0001304 ! variability of temperature -relationship: is_opposite_of PATO:0001313 ! invariant temperature +property_value: RO:0002604 PATO:0001313 [Term] id: PATO:0001315 @@ -8244,7 +8161,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0000189 ! discrimination disjoint_from: PATO:0001319 ! discriminate -relationship: is_opposite_of PATO:0001319 ! discriminate +property_value: RO:0002604 PATO:0001319 [Term] id: PATO:0001319 @@ -8254,7 +8171,7 @@ subset: disposition_slim subset: relational_slim subset: value_slim is_a: PATO:0000189 ! discrimination -relationship: is_opposite_of PATO:0001318 ! indiscriminate +property_value: RO:0002604 PATO:0001318 [Term] id: PATO:0001320 @@ -8543,7 +8460,7 @@ def: "A shape quality that obtains by virtue of the bearer having inward facing subset: cell_quality subset: value_slim is_a: PATO:0002005 ! concavity -relationship: is_opposite_of PATO:0001857 ! concave +property_value: RO:0002604 PATO:0001857 [Term] id: PATO:0001356 @@ -8604,7 +8521,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001662 ! fragility disjoint_from: PATO:0001716 ! non-fragile -relationship: is_opposite_of PATO:0001716 ! non-fragile +property_value: RO:0002604 PATO:0001716 [Term] id: PATO:0001364 @@ -9000,7 +8917,7 @@ name: structured def: "A structural quality inhering in a bearer by virtue of the bearer's having distinct structure." [PATOC:GVG] subset: value_slim is_a: PATO:0000141 ! structure -relationship: is_opposite_of PATO:0001412 ! unstructured +property_value: RO:0002604 PATO:0001412 [Term] id: PATO:0001412 @@ -9008,7 +8925,7 @@ name: unstructured def: "A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure." [PATOC:GVG] subset: value_slim is_a: PATO:0000141 ! structure -relationship: is_opposite_of PATO:0001411 ! structured +property_value: RO:0002604 PATO:0001411 [Term] id: PATO:0001413 @@ -9040,7 +8957,7 @@ name: regular duration def: "A duration which has regular start and/or end times." [PATOC:GVG] subset: value_slim is_a: PATO:0001309 ! duration -relationship: is_opposite_of PATO:0001417 ! irregular duration +property_value: RO:0002604 PATO:0001417 [Term] id: PATO:0001417 @@ -9048,7 +8965,7 @@ name: irregular duration def: "A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times." [PATOC:melissa] subset: value_slim is_a: PATO:0001309 ! duration -relationship: is_opposite_of PATO:0001416 ! regular duration +property_value: RO:0002604 PATO:0001416 [Term] id: PATO:0001418 @@ -9361,7 +9278,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001454 ! sensitivity to oxygen disjoint_from: PATO:0001456 ! anaerobic -relationship: is_opposite_of PATO:0001456 ! anaerobic +property_value: RO:0002604 PATO:0001456 [Term] id: PATO:0001456 @@ -9370,7 +9287,7 @@ def: "A quality inhering in a bearer by virtue of the bearer's independence on o subset: disposition_slim subset: value_slim is_a: PATO:0001454 ! sensitivity to oxygen -relationship: is_opposite_of PATO:0001455 ! aerobic +property_value: RO:0002604 PATO:0001455 [Term] id: PATO:0001457 @@ -9398,7 +9315,7 @@ def: "A sensitivity of a process inhering in a biological process by virtue of t subset: disposition_slim subset: value_slim is_a: PATO:0001458 ! sensitivity of a process to oxygen -relationship: is_opposite_of PATO:0001460 ! anaerobic (for occurrence) +property_value: RO:0002604 PATO:0001460 [Term] id: PATO:0001460 @@ -9407,7 +9324,7 @@ def: "A sensitivity of a process inhering in a biological process by virtue of t subset: disposition_slim subset: value_slim is_a: PATO:0001458 ! sensitivity of a process to oxygen -relationship: is_opposite_of PATO:0001459 ! aerobic (for occurrence) +property_value: RO:0002604 PATO:0001459 [Term] id: PATO:0001461 @@ -9509,9 +9426,7 @@ synonym: "low depth" EXACT [] synonym: "shallow" EXACT [] is_a: PATO:0000587 ! decreased size is_a: PATO:0001595 ! depth -intersection_of: PATO:0001595 ! depth -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001596 ! increased depth +property_value: RO:0002604 PATO:0001596 [Term] id: PATO:0001473 @@ -9538,9 +9453,7 @@ subset: value_slim synonym: "high position" RELATED [] is_a: PATO:0000140 ! position is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000140 ! position -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001476 ! decreased position +property_value: RO:0002604 PATO:0001476 [Term] id: PATO:0001476 @@ -9550,9 +9463,7 @@ subset: value_slim synonym: "low position" RELATED [] is_a: PATO:0000140 ! position is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000140 ! position -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001475 ! increased position +property_value: RO:0002604 PATO:0001475 [Term] id: PATO:0001477 @@ -9606,8 +9517,6 @@ synonym: "aplasia" EXACT [] synonym: "undeveloped" EXACT [] is_a: PATO:0002290 ! aplastic/hypoplastic is_a: PATO:0002291 ! agenesis -intersection_of: PATO:0002290 ! aplastic/hypoplastic -intersection_of: PATO:0002291 ! agenesis [Term] id: PATO:0001484 @@ -9628,7 +9537,7 @@ synonym: "compressed" EXACT [] synonym: "dense" RELATED [] synonym: "squashed" EXACT [] is_a: PATO:0000141 ! structure -relationship: is_opposite_of PATO:0002452 ! decondensed +property_value: RO:0002604 PATO:0002452 [Term] id: PATO:0001486 @@ -9684,7 +9593,7 @@ name: hypertrophic growth comment: This term will be obsoleted; Use GO:growth and PATO:rate. subset: value_slim is_a: PATO:0001492 ! growth rate -relationship: is_opposite_of PATO:0001494 ! hypotrophic growth +property_value: RO:0002604 PATO:0001494 [Term] id: PATO:0001494 @@ -9692,7 +9601,7 @@ name: hypotrophic growth comment: This term will be obsoleted; Use GO:growth and PATO:rate. subset: value_slim is_a: PATO:0001492 ! growth rate -relationship: is_opposite_of PATO:0001493 ! hypertrophic growth +property_value: RO:0002604 PATO:0001493 [Term] id: PATO:0001495 @@ -9748,7 +9657,7 @@ def: "A quality inhering in a bearer by virtue of the bearer's lacking complete subset: value_slim synonym: "underdeveloped" RELATED [] is_a: PATO:0000261 ! maturity -relationship: is_opposite_of PATO:0001701 ! mature +property_value: RO:0002604 PATO:0001701 [Term] id: PATO:0001502 @@ -9818,7 +9727,7 @@ def: "A functionality quality held by the bearer when the latter is able to perf subset: disposition_slim subset: value_slim is_a: PATO:0001509 ! functionality -relationship: is_opposite_of PATO:0001511 ! non-functional +property_value: RO:0002604 PATO:0001511 [Term] id: PATO:0001511 @@ -9832,7 +9741,7 @@ synonym: "disfunctional" EXACT [] synonym: "failure" RELATED [] synonym: "functional failure" EXACT [] is_a: PATO:0001509 ! functionality -relationship: is_opposite_of PATO:0001510 ! functional +property_value: RO:0002604 PATO:0001510 [Term] id: PATO:0001512 @@ -10034,7 +9943,7 @@ subset: value_slim synonym: "soluble" EXACT [] is_a: PATO:0001536 ! solubility disjoint_from: PATO:0001538 ! insoluble in -relationship: is_opposite_of PATO:0001538 ! insoluble in +property_value: RO:0002604 PATO:0001538 [Term] id: PATO:0001538 @@ -10045,7 +9954,7 @@ subset: relational_slim subset: value_slim synonym: "insoluble" EXACT [] is_a: PATO:0001536 ! solubility -relationship: is_opposite_of PATO:0001537 ! soluble in +property_value: RO:0002604 PATO:0001537 [Term] id: PATO:0001539 @@ -10093,7 +10002,7 @@ subset: disposition_slim subset: value_slim synonym: "bendy" EXACT [] is_a: PATO:0001543 ! flexibility -relationship: is_opposite_of PATO:0001545 ! inflexible +property_value: RO:0002604 PATO:0001545 [Term] id: PATO:0001545 @@ -10104,7 +10013,7 @@ subset: value_slim synonym: "stiff" EXACT [] synonym: "stiffness" RELATED [] is_a: PATO:0001543 ! flexibility -relationship: is_opposite_of PATO:0001544 ! flexible +property_value: RO:0002604 PATO:0001544 [Term] id: PATO:0001546 @@ -10141,9 +10050,7 @@ synonym: "high sensitivity toward" EXACT [] synonym: "increased sensitivity" EXACT [] is_a: PATO:0000516 ! sensitive toward is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000516 ! sensitive toward -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001550 ! decreased sensitivity toward +property_value: RO:0002604 PATO:0001550 [Term] id: PATO:0001550 @@ -10156,9 +10063,7 @@ synonym: "decreased sensitivity" EXACT [] synonym: "low sensitivity toward" EXACT [] is_a: PATO:0000516 ! sensitive toward is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000516 ! sensitive toward -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001549 ! increased sensitivity toward +property_value: RO:0002604 PATO:0001549 [Term] id: PATO:0001551 @@ -10170,9 +10075,7 @@ synonym: "high sensitivity of occurrent" EXACT [] synonym: "increased sensitivity of occurrent" EXACT [] is_a: PATO:0001457 ! sensitivity of a process is_a: PATO:0002304 ! increased process quality -intersection_of: PATO:0001457 ! sensitivity of a process -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001552 ! decreased sensitivity of a process +property_value: RO:0002604 PATO:0001552 [Term] id: PATO:0001552 @@ -10184,9 +10087,7 @@ synonym: "decreased sensitivity of occurrent" EXACT [] synonym: "low sensitivity of occurrent" EXACT [] is_a: PATO:0001457 ! sensitivity of a process is_a: PATO:0002302 ! decreased process quality -intersection_of: PATO:0001457 ! sensitivity of a process -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001551 ! increased sensitivity of a process +property_value: RO:0002604 PATO:0001551 [Term] id: PATO:0001553 @@ -10197,9 +10098,7 @@ subset: value_slim synonym: "high sensitivity of occurrent to oxygen" EXACT [] is_a: PATO:0001459 ! aerobic (for occurrence) is_a: PATO:0001551 ! increased sensitivity of a process -intersection_of: PATO:0001459 ! aerobic (for occurrence) -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001554 ! decreased sensitivity of a process to oxygen +property_value: RO:0002604 PATO:0001554 [Term] id: PATO:0001554 @@ -10210,9 +10109,7 @@ subset: value_slim synonym: "low sensitivity of occurrent to oxygen" EXACT [] is_a: PATO:0001459 ! aerobic (for occurrence) is_a: PATO:0001552 ! decreased sensitivity of a process -intersection_of: PATO:0001459 ! aerobic (for occurrence) -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001553 ! increased sensitivity of a process to oxygen +property_value: RO:0002604 PATO:0001553 [Term] id: PATO:0001555 @@ -10248,8 +10145,6 @@ subset: value_slim synonym: "having supernumerary functions" EXACT [] is_a: PATO:0001509 ! functionality is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001509 ! functionality -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal [Term] id: PATO:0001561 @@ -10270,9 +10165,7 @@ synonym: "low mass" EXACT [] synonym: "small mass" EXACT [] is_a: PATO:0000125 ! mass is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000125 ! mass -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001563 ! increased mass +property_value: RO:0002604 PATO:0001563 [Term] id: PATO:0001563 @@ -10284,9 +10177,7 @@ synonym: "high mass" EXACT [] synonym: "large mass" EXACT [] is_a: PATO:0000125 ! mass is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000125 ! mass -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001562 ! decreased mass +property_value: RO:0002604 PATO:0001562 [Term] id: PATO:0001564 @@ -10306,7 +10197,7 @@ synonym: "diffuse" EXACT [] synonym: "scattered" EXACT [] is_a: PATO:0000060 ! spatial pattern disjoint_from: PATO:0001629 ! aggregated -relationship: is_opposite_of PATO:0001567 ! undistributed +property_value: RO:0002604 PATO:0001567 [Term] id: PATO:0001567 @@ -10314,7 +10205,7 @@ name: undistributed def: "A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up." [WordNet:WordNet] subset: value_slim is_a: PATO:0000060 ! spatial pattern -relationship: is_opposite_of PATO:0001566 ! distributed +property_value: RO:0002604 PATO:0001566 [Term] id: PATO:0001570 @@ -10356,9 +10247,7 @@ subset: value_slim synonym: "low pressure" EXACT [] is_a: PATO:0001025 ! pressure is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001025 ! pressure -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001576 ! increased pressure +property_value: RO:0002604 PATO:0001576 [Term] id: PATO:0001576 @@ -10368,9 +10257,7 @@ subset: value_slim synonym: "high pressure" EXACT [] is_a: PATO:0001025 ! pressure is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001025 ! pressure -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001575 ! decreased pressure +property_value: RO:0002604 PATO:0001575 [Term] id: PATO:0001577 @@ -10381,9 +10268,7 @@ subset: value_slim synonym: "high permeability" EXACT [] is_a: PATO:0000982 ! permeable is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000982 ! permeable -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001578 ! decreased permeability +property_value: RO:0002604 PATO:0001578 [Term] id: PATO:0001578 @@ -10394,9 +10279,7 @@ subset: value_slim synonym: "low permeability" EXACT [] is_a: PATO:0000982 ! permeable is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000982 ! permeable -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001577 ! increased permeability +property_value: RO:0002604 PATO:0001577 [Term] id: PATO:0001579 @@ -10416,9 +10299,7 @@ subset: value_slim synonym: "high contractility" EXACT [] is_a: PATO:0001690 ! contractile is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001690 ! contractile -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001581 ! decreased contractility +property_value: RO:0002604 PATO:0001581 [Term] id: PATO:0001581 @@ -10429,9 +10310,7 @@ subset: value_slim synonym: "low contractility" EXACT [] is_a: PATO:0001690 ! contractile is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001690 ! contractile -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001580 ! increased contractility +property_value: RO:0002604 PATO:0001580 [Term] id: PATO:0001582 @@ -10447,11 +10326,8 @@ def: "A variability which is relatively low." [PATO:GVG] subset: value_slim synonym: "low variability" EXACT [] is_a: PATO:0001227 ! variant -is_a: PATO:0002302 ! decreased process quality -is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001227 ! variant -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001584 ! increased variability +is_a: PATO:0002301 ! decreased quality +property_value: RO:0002604 PATO:0001584 [Term] id: PATO:0001584 @@ -10460,11 +10336,8 @@ def: "A variability which is relatively high." [PATO:GVG] subset: value_slim synonym: "high variability" EXACT [] is_a: PATO:0001227 ! variant -is_a: PATO:0002304 ! increased process quality -is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001227 ! variant -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001583 ! decreased variability +is_a: PATO:0002300 ! increased quality +property_value: RO:0002604 PATO:0001583 [Term] id: PATO:0001585 @@ -10491,11 +10364,8 @@ def: "A variability of rate which is relatively high." [PATO:GVG] subset: value_slim synonym: "high variability of rate" EXACT [] is_a: PATO:0001586 ! variability of rate -is_a: PATO:0002304 ! increased process quality -is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001586 ! variability of rate -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001588 ! decreased variability of rate +is_a: PATO:0002300 ! increased quality +property_value: RO:0002604 PATO:0001588 [Term] id: PATO:0001588 @@ -10504,11 +10374,8 @@ def: "A variability of rate which is relatively low." [PATO:GVG] subset: value_slim synonym: "low variability of rate" EXACT [] is_a: PATO:0001586 ! variability of rate -is_a: PATO:0002302 ! decreased process quality -is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001586 ! variability of rate -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001587 ! increased variability of rate +is_a: PATO:0002301 ! decreased quality +property_value: RO:0002604 PATO:0001587 [Term] id: PATO:0001589 @@ -10541,9 +10408,7 @@ def: "A curvature which is relatively high." [PATO:GVG] subset: value_slim is_a: PATO:0000406 ! curved is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000406 ! curved -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001593 ! decreased curvature +property_value: RO:0002604 PATO:0001593 [Term] id: PATO:0001593 @@ -10552,9 +10417,7 @@ def: "A curvature which is relatively low." [PATO:GVG] subset: value_slim is_a: PATO:0000406 ! curved is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000406 ! curved -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001592 ! increased curvature +property_value: RO:0002604 PATO:0001592 [Term] id: PATO:0001594 @@ -10580,9 +10443,7 @@ subset: value_slim synonym: "deep" EXACT [] is_a: PATO:0000586 ! increased size is_a: PATO:0001595 ! depth -intersection_of: PATO:0001595 ! depth -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001472 ! decreased depth +property_value: RO:0002604 PATO:0001472 [Term] id: PATO:0001597 @@ -10643,9 +10504,7 @@ def: "A life span which is relatively high." [PATO:GVG] synonym: "high life span" EXACT [] is_a: PATO:0000050 ! life span is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000050 ! life span -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001604 ! decreased life span +property_value: RO:0002604 PATO:0001604 [Term] id: PATO:0001604 @@ -10654,9 +10513,7 @@ def: "A life span which is relatively low." [PATO:GVG] synonym: "low life span" EXACT [] is_a: PATO:0000050 ! life span is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000050 ! life span -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001603 ! increased life span +property_value: RO:0002604 PATO:0001603 [Term] id: PATO:0001605 @@ -10713,11 +10570,8 @@ def: "A variability of color which is relatively high." [PATO:GVG] subset: value_slim synonym: "high variability of color" EXACT [] is_a: PATO:0001615 ! variant color -is_a: PATO:0002304 ! increased process quality -is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001615 ! variant color -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001613 ! decreased variability of color +is_a: PATO:0002300 ! increased quality +property_value: RO:0002604 PATO:0001613 [Term] id: PATO:0001613 @@ -10726,11 +10580,8 @@ def: "A variability of color which is relatively low." [PATO:GVG] subset: value_slim synonym: "low variability of color" EXACT [] is_a: PATO:0001615 ! variant color -is_a: PATO:0002302 ! decreased process quality -is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001615 ! variant color -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001612 ! increased variability of color +is_a: PATO:0002301 ! decreased quality +property_value: RO:0002604 PATO:0001612 [Term] id: PATO:0001614 @@ -10738,7 +10589,7 @@ name: invariant color def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color." [PATO:GVG] subset: value_slim is_a: PATO:0001611 ! variability of color -relationship: is_opposite_of PATO:0001615 ! variant color +property_value: RO:0002604 PATO:0001615 [Term] id: PATO:0001615 @@ -10746,7 +10597,7 @@ name: variant color def: "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour." [PATO:GVG] subset: value_slim is_a: PATO:0001611 ! variability of color -relationship: is_opposite_of PATO:0001614 ! invariant color +property_value: RO:0002604 PATO:0001614 [Term] id: PATO:0001617 @@ -10766,9 +10617,7 @@ subset: value_slim synonym: "high tonicity" EXACT [] is_a: PATO:0001439 ! tonicity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001439 ! tonicity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001619 ! decreased tonicity +property_value: RO:0002604 PATO:0001619 [Term] id: PATO:0001619 @@ -10779,9 +10628,7 @@ subset: value_slim synonym: "low tonicity" EXACT [] is_a: PATO:0001439 ! tonicity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001439 ! tonicity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001618 ! increased tonicity +property_value: RO:0002604 PATO:0001618 [Term] id: PATO:0001620 @@ -10800,9 +10647,7 @@ subset: value_slim synonym: "low turgor" EXACT [] is_a: PATO:0001620 ! turgor is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001620 ! turgor -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001622 ! increased turgor +property_value: RO:0002604 PATO:0001622 [Term] id: PATO:0001622 @@ -10813,9 +10658,7 @@ subset: value_slim synonym: "high turgor" EXACT [] is_a: PATO:0001620 ! turgor is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001620 ! turgor -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001621 ! decreased turgor +property_value: RO:0002604 PATO:0001621 [Term] id: PATO:0001623 @@ -10845,9 +10688,7 @@ synonym: "low functionality" EXACT [] synonym: "partial functionality" EXACT [] is_a: PATO:0001510 ! functional is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001510 ! functional -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001625 ! increased functionality +property_value: RO:0002604 PATO:0001625 [Term] id: PATO:0001625 @@ -10858,9 +10699,7 @@ subset: value_slim synonym: "high functionality" EXACT [] is_a: PATO:0001510 ! functional is_a: PATO:0001559 ! having extra function -intersection_of: PATO:0001510 ! functional -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001624 ! decreased functionality +property_value: RO:0002604 PATO:0001624 [Term] id: PATO:0001626 @@ -10878,7 +10717,7 @@ def: "A wholeness quality inhering in a bearer by virtue of the bearer's has eno subset: value_slim synonym: "adequate" RELATED [] is_a: PATO:0001626 ! sufficiency -relationship: is_opposite_of PATO:0001628 ! insufficient +property_value: RO:0002604 PATO:0001628 [Term] id: PATO:0001628 @@ -10887,7 +10726,7 @@ def: "A wholeness quality inhering in a bearer by virtue of the bearer's lacks e subset: value_slim synonym: "inadequate" RELATED [] is_a: PATO:0001626 ! sufficiency -relationship: is_opposite_of PATO:0001627 ! sufficient +property_value: RO:0002604 PATO:0001627 [Term] id: PATO:0001629 @@ -10943,7 +10782,7 @@ def: "A necessity quality (continuant) inhering in a bearer by virtue of the bea subset: value_slim is_a: PATO:0001634 ! necessity (continuant) disjoint_from: PATO:0001636 ! unnecessary (continuant) -relationship: is_opposite_of PATO:0001636 ! unnecessary (continuant) +property_value: RO:0002604 PATO:0001636 [Term] id: PATO:0001636 @@ -10951,7 +10790,7 @@ name: unnecessary (continuant) def: "A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable." [WordNet:WordNet] subset: value_slim is_a: PATO:0001634 ! necessity (continuant) -relationship: is_opposite_of PATO:0001635 ! necessary (continuant) +property_value: RO:0002604 PATO:0001635 [Term] id: PATO:0001637 @@ -10966,7 +10805,7 @@ name: necessary (occurrent) def: "A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable." [PATO:GVG] subset: value_slim is_a: PATO:0001637 ! necessity of occurrent -relationship: is_opposite_of PATO:0001639 ! unnecessary (occurrent) +property_value: RO:0002604 PATO:0001639 [Term] id: PATO:0001639 @@ -10974,7 +10813,7 @@ name: unnecessary (occurrent) def: "A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable." [PATO:GVG] subset: value_slim is_a: PATO:0001637 ! necessity of occurrent -relationship: is_opposite_of PATO:0001638 ! necessary (occurrent) +property_value: RO:0002604 PATO:0001638 [Term] id: PATO:0001643 @@ -11028,9 +10867,7 @@ synonym: "high resistance to" EXACT [] synonym: "increased resistance" EXACT [] is_a: PATO:0001178 ! resistant to is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001178 ! resistant to -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001651 ! decreased resistance to +property_value: RO:0002604 PATO:0001651 [Term] id: PATO:0001651 @@ -11043,9 +10880,7 @@ synonym: "decreased resistance" EXACT [] synonym: "low resistance to" EXACT [] is_a: PATO:0001178 ! resistant to is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001178 ! resistant to -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001650 ! increased resistance to +property_value: RO:0002604 PATO:0001650 [Term] id: PATO:0001652 @@ -11065,7 +10900,7 @@ subset: value_slim synonym: "aligned" EXACT [] synonym: "aligned to" RELATED [] is_a: PATO:0001652 ! alignment -relationship: is_opposite_of PATO:0001654 ! misaligned with +property_value: RO:0002604 PATO:0001654 [Term] id: PATO:0001654 @@ -11076,7 +10911,7 @@ subset: value_slim synonym: "misaligned" EXACT [] synonym: "unaligned with" EXACT [] is_a: PATO:0001652 ! alignment -relationship: is_opposite_of PATO:0001653 ! aligned with +property_value: RO:0002604 PATO:0001653 [Term] id: PATO:0001655 @@ -11096,9 +10931,7 @@ subset: value_slim synonym: "low osmolarity" EXACT [] is_a: PATO:0001655 ! osmolarity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001655 ! osmolarity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001657 ! increased osmolarity +property_value: RO:0002604 PATO:0001657 [Term] id: PATO:0001657 @@ -11109,9 +10942,7 @@ subset: value_slim synonym: "high osmolarity" EXACT [] is_a: PATO:0001655 ! osmolarity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001655 ! osmolarity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001656 ! decreased osmolarity +property_value: RO:0002604 PATO:0001656 [Term] id: PATO:0001658 @@ -11165,9 +10996,7 @@ subset: value_slim synonym: "high solubility" EXACT [] is_a: PATO:0001537 ! soluble in is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001537 ! soluble in -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001664 ! decreased solubility +property_value: RO:0002604 PATO:0001664 [Term] id: PATO:0001664 @@ -11179,9 +11008,7 @@ subset: value_slim synonym: "low solubility" EXACT [] is_a: PATO:0001537 ! soluble in is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001537 ! soluble in -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001663 ! increased solubility +property_value: RO:0002604 PATO:0001663 [Term] id: PATO:0001665 @@ -11226,9 +11053,7 @@ synonym: "high susceptibility toward" EXACT [] synonym: "increased susceptibility" EXACT [] is_a: PATO:0001152 ! susceptible toward is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001152 ! susceptible toward -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001670 ! decreased susceptibility toward +property_value: RO:0002604 PATO:0001670 [Term] id: PATO:0001670 @@ -11241,9 +11066,7 @@ synonym: "decreased susceptibility" EXACT [] synonym: "low susceptibility toward" EXACT [] is_a: PATO:0001152 ! susceptible toward is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001152 ! susceptible toward -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001669 ! increased susceptibility toward +property_value: RO:0002604 PATO:0001669 [Term] id: PATO:0001671 @@ -11253,9 +11076,7 @@ subset: value_slim synonym: "high distribution" EXACT [] is_a: PATO:0001475 ! increased position is_a: PATO:0001566 ! distributed -intersection_of: PATO:0001566 ! distributed -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001672 ! decreased distribution +property_value: RO:0002604 PATO:0001672 [Term] id: PATO:0001672 @@ -11265,9 +11086,7 @@ subset: value_slim synonym: "low distribution" EXACT [] is_a: PATO:0001476 ! decreased position is_a: PATO:0001566 ! distributed -intersection_of: PATO:0001566 ! distributed -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001671 ! increased distribution +property_value: RO:0002604 PATO:0001671 [Term] id: PATO:0001673 @@ -11295,9 +11114,7 @@ subset: value_slim synonym: "low efficiency" EXACT [] is_a: PATO:0001678 ! efficient is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001678 ! efficient -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001676 ! increased efficiency +property_value: RO:0002604 PATO:0001676 [Term] id: PATO:0001676 @@ -11307,9 +11124,7 @@ subset: value_slim synonym: "high efficiency" EXACT [] is_a: PATO:0001678 ! efficient is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001678 ! efficient -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001675 ! decreased efficiency +property_value: RO:0002604 PATO:0001675 [Term] id: PATO:0001677 @@ -11318,7 +11133,7 @@ def: "An efficiency quality inhering in a bearer by virtue of the bearer's lacki subset: value_slim is_a: PATO:0001029 ! efficiency disjoint_from: PATO:0001678 ! efficient -relationship: is_opposite_of PATO:0001678 ! efficient +property_value: RO:0002604 PATO:0001678 [Term] id: PATO:0001678 @@ -11326,7 +11141,7 @@ name: efficient def: "An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency." [PATOC:GVG] subset: value_slim is_a: PATO:0001029 ! efficiency -relationship: is_opposite_of PATO:0001677 ! inefficient +property_value: RO:0002604 PATO:0001677 [Term] id: PATO:0001679 @@ -11371,9 +11186,7 @@ subset: value_slim synonym: "high magnetism" EXACT [] is_a: PATO:0001685 ! magnetic is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001685 ! magnetic -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001684 ! decreased magnetism +property_value: RO:0002604 PATO:0001684 [Term] id: PATO:0001684 @@ -11384,9 +11197,7 @@ subset: value_slim synonym: "low magnetism" EXACT [] is_a: PATO:0001685 ! magnetic is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001685 ! magnetic -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001683 ! increased magnetism +property_value: RO:0002604 PATO:0001683 [Term] id: PATO:0001685 @@ -11396,7 +11207,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001682 ! magnetism disjoint_from: PATO:0001686 ! non-magnetic -relationship: is_opposite_of PATO:0001686 ! non-magnetic +property_value: RO:0002604 PATO:0001686 [Term] id: PATO:0001686 @@ -11405,7 +11216,7 @@ def: "A magnetic quality inhering in a bearer by virtue of the bearer's inabilit subset: disposition_slim subset: value_slim is_a: PATO:0001682 ! magnetism -relationship: is_opposite_of PATO:0001685 ! magnetic +property_value: RO:0002604 PATO:0001685 [Term] id: PATO:0001687 @@ -11423,9 +11234,7 @@ synonym: "elevated" RELATED [] synonym: "high elevation" EXACT [] is_a: PATO:0001475 ! increased position is_a: PATO:0001687 ! elevation -intersection_of: PATO:0001687 ! elevation -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001689 ! decreased elevation +property_value: RO:0002604 PATO:0001689 [Term] id: PATO:0001689 @@ -11435,9 +11244,7 @@ subset: value_slim synonym: "low elevation" EXACT [] is_a: PATO:0001476 ! decreased position is_a: PATO:0001687 ! elevation -intersection_of: PATO:0001687 ! elevation -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001688 ! increased elevation +property_value: RO:0002604 PATO:0001688 [Term] id: PATO:0001690 @@ -11448,7 +11255,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001579 ! contractility disjoint_from: PATO:0001691 ! non-contractile -relationship: is_opposite_of PATO:0001691 ! non-contractile +property_value: RO:0002604 PATO:0001691 [Term] id: PATO:0001691 @@ -11458,7 +11265,7 @@ comment: This refers to the disposition of the bearer. subset: disposition_slim subset: value_slim is_a: PATO:0001579 ! contractility -relationship: is_opposite_of PATO:0001690 ! contractile +property_value: RO:0002604 PATO:0001690 [Term] id: PATO:0001693 @@ -11469,9 +11276,7 @@ subset: value_slim synonym: "high viscosity" EXACT [] is_a: PATO:0000998 ! viscous is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000998 ! viscous -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001694 ! decreased viscosity +property_value: RO:0002604 PATO:0001694 [Term] id: PATO:0001694 @@ -11482,9 +11287,7 @@ subset: value_slim synonym: "low viscosity" EXACT [] is_a: PATO:0000998 ! viscous is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000998 ! viscous -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001693 ! increased viscosity +property_value: RO:0002604 PATO:0001693 [Term] id: PATO:0001695 @@ -11495,9 +11298,7 @@ subset: value_slim synonym: "high fecundity" EXACT [] is_a: PATO:0000273 ! fecundity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000273 ! fecundity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001696 ! decreased fecundity +property_value: RO:0002604 PATO:0001696 [Term] id: PATO:0001696 @@ -11508,9 +11309,7 @@ subset: value_slim synonym: "low fecundity" EXACT [] is_a: PATO:0000273 ! fecundity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000273 ! fecundity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001695 ! increased fecundity +property_value: RO:0002604 PATO:0001695 [Term] id: PATO:0001697 @@ -11522,9 +11321,7 @@ subset: value_slim synonym: "low photosensitivity" EXACT [] is_a: PATO:0000547 ! photosensitive is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000547 ! photosensitive -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001698 ! increased photosensitivity +property_value: RO:0002604 PATO:0001698 [Term] id: PATO:0001698 @@ -11536,9 +11333,7 @@ subset: value_slim synonym: "high photosensitivity" EXACT [] is_a: PATO:0000547 ! photosensitive is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000547 ! photosensitive -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001697 ! decreased photosensitivity +property_value: RO:0002604 PATO:0001697 [Term] id: PATO:0001699 @@ -11546,7 +11341,7 @@ name: regular sleep pattern def: "A sleep pattern which has regular start and/or end times." [PATOC:GVG] subset: value_slim is_a: PATO:0000062 ! sleep pattern -relationship: is_opposite_of PATO:0001700 ! irregular sleep pattern +property_value: RO:0002604 PATO:0001700 [Term] id: PATO:0001700 @@ -11554,7 +11349,7 @@ name: irregular sleep pattern def: "A sleep pattern which has irregular start and/or end times." [PATOC:GVG] subset: value_slim is_a: PATO:0000062 ! sleep pattern -relationship: is_opposite_of PATO:0001699 ! regular sleep pattern +property_value: RO:0002604 PATO:0001699 [Term] id: PATO:0001701 @@ -11562,7 +11357,7 @@ name: mature def: "A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] subset: value_slim is_a: PATO:0000261 ! maturity -relationship: is_opposite_of PATO:0001501 ! immature +property_value: RO:0002604 PATO:0001501 [Term] id: PATO:0001702 @@ -11604,7 +11399,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002265 ! behavioural activity disjoint_from: PATO:0001707 ! behavioural active -relationship: is_opposite_of PATO:0001707 ! behavioural active +property_value: RO:0002604 PATO:0001707 [Term] id: PATO:0001707 @@ -11612,7 +11407,7 @@ name: behavioural active def: "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity." [PATOC:GVG] subset: value_slim is_a: PATO:0002265 ! behavioural activity -relationship: is_opposite_of PATO:0001706 ! behavioural inactive +property_value: RO:0002604 PATO:0001706 [Term] id: PATO:0001708 @@ -11653,9 +11448,7 @@ def: "A perimeter which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0000573 ! increased length is_a: PATO:0001711 ! perimeter -intersection_of: PATO:0001711 ! perimeter -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001713 ! decreased perimeter +property_value: RO:0002604 PATO:0001713 [Term] id: PATO:0001713 @@ -11664,9 +11457,7 @@ def: "A perimeter which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0000574 ! decreased length is_a: PATO:0001711 ! perimeter -intersection_of: PATO:0001711 ! perimeter -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001712 ! increased perimeter +property_value: RO:0002604 PATO:0001712 [Term] id: PATO:0001714 @@ -11675,9 +11466,7 @@ def: "A diameter which is relatively large." [PATOC:GVG] subset: value_slim is_a: PATO:0000573 ! increased length is_a: PATO:0001334 ! diameter -intersection_of: PATO:0001334 ! diameter -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001715 ! decreased diameter +property_value: RO:0002604 PATO:0001715 [Term] id: PATO:0001715 @@ -11686,9 +11475,7 @@ def: "A diameter which is relatively small." [PATOC:GVG] subset: value_slim is_a: PATO:0000574 ! decreased length is_a: PATO:0001334 ! diameter -intersection_of: PATO:0001334 ! diameter -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001714 ! increased diameter +property_value: RO:0002604 PATO:0001714 [Term] id: PATO:0001716 @@ -11700,7 +11487,7 @@ synonym: "resilient" RELATED [] synonym: "strong" RELATED [] synonym: "tough" RELATED [] is_a: PATO:0001662 ! fragility -relationship: is_opposite_of PATO:0001362 ! fragile +property_value: RO:0002604 PATO:0001362 [Term] id: PATO:0001717 @@ -11750,9 +11537,7 @@ subset: value_slim synonym: "high female receptivity" EXACT [] is_a: PATO:0001720 ! female receptivity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001720 ! female receptivity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001724 ! decreased female receptivity +property_value: RO:0002604 PATO:0001724 [Term] id: PATO:0001724 @@ -11763,9 +11548,7 @@ subset: value_slim synonym: "low female receptivity" EXACT [] is_a: PATO:0001720 ! female receptivity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001720 ! female receptivity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001723 ! increased female receptivity +property_value: RO:0002604 PATO:0001723 [Term] id: PATO:0001725 @@ -11776,9 +11559,7 @@ subset: value_slim synonym: "high male receptivity" EXACT [] is_a: PATO:0001721 ! male receptivity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001721 ! male receptivity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001726 ! decreased male receptivity +property_value: RO:0002604 PATO:0001726 [Term] id: PATO:0001726 @@ -11789,9 +11570,7 @@ subset: value_slim synonym: "low male receptivity" EXACT [] is_a: PATO:0001721 ! male receptivity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001721 ! male receptivity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001725 ! increased male receptivity +property_value: RO:0002604 PATO:0001725 [Term] id: PATO:0001727 @@ -11926,9 +11705,7 @@ subset: value_slim synonym: "high radioactivity" EXACT [] is_a: PATO:0001741 ! radioactive is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001741 ! radioactive -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001743 ! decreased radioactivity +property_value: RO:0002604 PATO:0001743 [Term] id: PATO:0001743 @@ -11938,9 +11715,7 @@ subset: value_slim synonym: "low radioactivity" EXACT [] is_a: PATO:0001741 ! radioactive is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001741 ! radioactive -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001742 ! increased radioactivity +property_value: RO:0002604 PATO:0001742 [Term] id: PATO:0001744 @@ -11991,7 +11766,7 @@ subset: value_slim synonym: "hypoplastic growth" EXACT [] synonym: "pedomorphic growth" EXACT [] is_a: PATO:0001490 ! heterochronic growth -relationship: is_opposite_of PATO:0001752 ! peramorphic growth +property_value: RO:0002604 PATO:0001752 [Term] id: PATO:0001750 @@ -12014,7 +11789,7 @@ def: "A heterochronic growth quality inhering in an organism, structure, or grou subset: attribute_slim synonym: "hyperplastic growth" EXACT [] is_a: PATO:0001490 ! heterochronic growth -relationship: is_opposite_of PATO:0001749 ! paedomorphic growth +property_value: RO:0002604 PATO:0001749 [Term] id: PATO:0001753 @@ -12080,7 +11855,7 @@ name: female semi-fertile subset: disposition_slim subset: value_slim is_a: PATO:0001767 ! semi-fertile -relationship: is_opposite_of PATO:0001763 ! female semi-sterile +property_value: RO:0002604 PATO:0001763 [Term] id: PATO:0001761 @@ -12088,7 +11863,7 @@ name: male semi-fertile subset: disposition_slim subset: value_slim is_a: PATO:0001767 ! semi-fertile -relationship: is_opposite_of PATO:0001762 ! male semi-sterile +property_value: RO:0002604 PATO:0001762 [Term] id: PATO:0001762 @@ -12096,7 +11871,7 @@ name: male semi-sterile subset: disposition_slim subset: value_slim is_a: PATO:0000279 ! male fertility -relationship: is_opposite_of PATO:0001761 ! male semi-fertile +property_value: RO:0002604 PATO:0001761 [Term] id: PATO:0001763 @@ -12104,7 +11879,7 @@ name: female semi-sterile subset: disposition_slim subset: value_slim is_a: PATO:0000277 ! female fertility -relationship: is_opposite_of PATO:0001760 ! female semi-fertile +property_value: RO:0002604 PATO:0001760 [Term] id: PATO:0001764 @@ -12114,9 +11889,7 @@ subset: value_slim synonym: "high age" EXACT [] is_a: PATO:0000011 ! age is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000011 ! age -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001765 ! decreased age +property_value: RO:0002604 PATO:0001765 [Term] id: PATO:0001765 @@ -12126,9 +11899,7 @@ subset: value_slim synonym: "low age" EXACT [] is_a: PATO:0000011 ! age is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000011 ! age -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001764 ! increased age +property_value: RO:0002604 PATO:0001764 [Term] id: PATO:0001766 @@ -12212,9 +11983,7 @@ subset: value_slim synonym: "high flexibility" EXACT [] is_a: PATO:0001544 ! flexible is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001544 ! flexible -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001777 ! decreased flexibility +property_value: RO:0002604 PATO:0001777 [Term] id: PATO:0001777 @@ -12225,9 +11994,7 @@ subset: value_slim synonym: "low flexibility" EXACT [] is_a: PATO:0001544 ! flexible is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001544 ! flexible -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001776 ! increased flexibility +property_value: RO:0002604 PATO:0001776 [Term] id: PATO:0001778 @@ -12237,9 +12004,7 @@ subset: value_slim synonym: "high strength" EXACT [] is_a: PATO:0001230 ! strength is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001230 ! strength -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001779 ! decreased strength +property_value: RO:0002604 PATO:0001779 [Term] id: PATO:0001779 @@ -12249,9 +12014,7 @@ subset: value_slim synonym: "weak" EXACT [] is_a: PATO:0001230 ! strength is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001230 ! strength -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001778 ! increased strength +property_value: RO:0002604 PATO:0001778 [Term] id: PATO:0001780 @@ -12277,9 +12040,7 @@ subset: value_slim synonym: "high intensity" EXACT [] is_a: PATO:0000049 ! intensity is_a: PATO:0002300 ! increased quality -intersection_of: PATO:0000049 ! intensity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001783 ! decreased intensity +property_value: RO:0002604 PATO:0001783 [Term] id: PATO:0001783 @@ -12289,9 +12050,7 @@ subset: value_slim synonym: "low intensity" EXACT [] is_a: PATO:0000049 ! intensity is_a: PATO:0002301 ! decreased quality -intersection_of: PATO:0000049 ! intensity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001782 ! increased intensity +property_value: RO:0002604 PATO:0001782 [Term] id: PATO:0001784 @@ -12345,9 +12104,7 @@ subset: value_slim synonym: "high density" EXACT [] is_a: PATO:0001164 ! dense is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001164 ! dense -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001790 ! decreased mass density +property_value: RO:0002604 PATO:0001790 [Term] id: PATO:0001789 @@ -12366,9 +12123,7 @@ subset: value_slim synonym: "low density" EXACT [] is_a: PATO:0001164 ! dense is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001164 ! dense -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001788 ! increased mass density +property_value: RO:0002604 PATO:0001788 [Term] id: PATO:0001791 @@ -12413,9 +12168,7 @@ subset: value_slim synonym: "high coiling" EXACT [] is_a: PATO:0000404 ! coiled is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000404 ! coiled -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001796 ! decreased coiling +property_value: RO:0002604 PATO:0001796 [Term] id: PATO:0001796 @@ -12426,9 +12179,7 @@ subset: value_slim synonym: "low coiling" EXACT [] is_a: PATO:0000404 ! coiled is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000404 ! coiled -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001795 ! increased coiling +property_value: RO:0002604 PATO:0001795 [Term] id: PATO:0001798 @@ -12465,8 +12216,6 @@ synonym: "dehydrated" EXACT [] synonym: "dry" RELATED [] is_a: PATO:0001800 ! water composition is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001800 ! water composition -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal [Term] id: PATO:0001802 @@ -12518,9 +12267,7 @@ subset: value_slim synonym: "low sensitivity to irradiation" EXACT [] is_a: PATO:0001806 ! sensitivity to irradiation is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001806 ! sensitivity to irradiation -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001808 ! increased sensitivity to irradiation +property_value: RO:0002604 PATO:0001808 [Term] id: PATO:0001808 @@ -12531,9 +12278,7 @@ subset: value_slim synonym: "high sensitivity to irradiation" EXACT [] is_a: PATO:0001806 ! sensitivity to irradiation is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001806 ! sensitivity to irradiation -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001807 ! decreased sensitivity to irradiation +property_value: RO:0002604 PATO:0001807 [Term] id: PATO:0001809 @@ -12602,7 +12347,7 @@ subset: value_slim synonym: "high fatigability" EXACT [] is_a: PATO:0001779 ! decreased strength is_a: PATO:0001815 ! fatigability -relationship: is_opposite_of PATO:0001817 ! decreased fatigability +property_value: RO:0002604 PATO:0001817 [Term] id: PATO:0001817 @@ -12613,7 +12358,7 @@ subset: value_slim synonym: "low fatigability" EXACT [] is_a: PATO:0001778 ! increased strength is_a: PATO:0001815 ! fatigability -relationship: is_opposite_of PATO:0001816 ! increased fatigability +property_value: RO:0002604 PATO:0001816 [Term] id: PATO:0001818 @@ -12623,7 +12368,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence -relationship: is_opposite_of PATO:0002026 ! non-progressive +property_value: RO:0002604 PATO:0002026 [Term] id: PATO:0001819 @@ -12642,7 +12387,7 @@ subset: mpath_slim subset: value_slim synonym: "unperforated" EXACT [] is_a: PATO:0002014 ! structure, cavities -relationship: is_opposite_of PATO:0002112 ! perforate +property_value: RO:0002604 PATO:0002112 [Term] id: PATO:0001822 @@ -12661,7 +12406,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0001822 ! wetness disjoint_from: PATO:0001824 ! dry -relationship: is_opposite_of PATO:0001824 ! dry +property_value: RO:0002604 PATO:0001824 [Term] id: PATO:0001824 @@ -12670,7 +12415,7 @@ def: "A wetness quality inhering in a bearer by virtue of the bearer's not being subset: mpath_slim subset: value_slim is_a: PATO:0001822 ! wetness -relationship: is_opposite_of PATO:0001823 ! wet +property_value: RO:0002604 PATO:0001823 [Term] id: PATO:0001825 @@ -12679,9 +12424,7 @@ def: "A wetness quality that is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0001823 ! wet is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001823 ! wet -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001826 ! decreased wetness +property_value: RO:0002604 PATO:0001826 [Term] id: PATO:0001826 @@ -12691,9 +12434,7 @@ subset: value_slim synonym: "low wetness" EXACT [] is_a: PATO:0001823 ! wet is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001823 ! wet -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001825 ! increased wetness +property_value: RO:0002604 PATO:0001825 [Term] id: PATO:0001827 @@ -12725,9 +12466,7 @@ subset: value_slim synonym: "low female fertility" EXACT [] is_a: PATO:0000888 ! female fertile is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000888 ! female fertile -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001831 ! increased female fertility +property_value: RO:0002604 PATO:0001831 [Term] id: PATO:0001831 @@ -12738,9 +12477,7 @@ subset: value_slim synonym: "high female fertility" EXACT [] is_a: PATO:0000888 ! female fertile is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000888 ! female fertile -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001830 ! decreased female fertility +property_value: RO:0002604 PATO:0001830 [Term] id: PATO:0001832 @@ -12751,9 +12488,7 @@ subset: value_slim synonym: "high male fertility" EXACT [] is_a: PATO:0000891 ! male fertile is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000891 ! male fertile -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001833 ! decreased male fertility +property_value: RO:0002604 PATO:0001833 [Term] id: PATO:0001833 @@ -12764,9 +12499,7 @@ subset: value_slim synonym: "low male fertility" EXACT [] is_a: PATO:0000891 ! male fertile is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000891 ! male fertile -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001832 ! increased male fertility +property_value: RO:0002604 PATO:0001832 [Term] id: PATO:0001834 @@ -12777,9 +12510,7 @@ subset: value_slim synonym: "low fertility" EXACT [] is_a: PATO:0000955 ! fertile is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000955 ! fertile -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001835 ! increased fertility +property_value: RO:0002604 PATO:0001835 [Term] id: PATO:0001835 @@ -12790,9 +12521,7 @@ subset: value_slim synonym: "high fertility" EXACT [] is_a: PATO:0000955 ! fertile is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000955 ! fertile -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001834 ! decreased fertility +property_value: RO:0002604 PATO:0001834 [Term] id: PATO:0001836 @@ -12810,9 +12539,7 @@ subset: value_slim synonym: "low flow" EXACT [] is_a: PATO:0002243 ! fluid flow rate is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002243 ! fluid flow rate -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001839 ! increased fluid flow +property_value: RO:0002604 PATO:0001839 [Term] id: PATO:0001839 @@ -12822,9 +12549,7 @@ subset: value_slim synonym: "high flow" EXACT [] is_a: PATO:0002243 ! fluid flow rate is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002243 ! fluid flow rate -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001838 ! decreased fluid flow +property_value: RO:0002604 PATO:0001838 [Term] id: PATO:0001841 @@ -12852,9 +12577,7 @@ subset: value_slim synonym: "low acidity" EXACT [] is_a: PATO:0001842 ! acidity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001842 ! acidity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001844 ! increased acidity +property_value: RO:0002604 PATO:0001844 [Term] id: PATO:0001844 @@ -12864,9 +12587,7 @@ subset: value_slim synonym: "high acidity" EXACT [] is_a: PATO:0001842 ! acidity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001842 ! acidity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001843 ! decreased acidity +property_value: RO:0002604 PATO:0001843 [Term] id: PATO:0001845 @@ -12979,7 +12700,7 @@ def: "A shape quality in a bearer by virtue of the bearer's curving inward." [Wo subset: cell_quality subset: value_slim is_a: PATO:0002005 ! concavity -relationship: is_opposite_of PATO:0001355 ! convex +property_value: RO:0002604 PATO:0001355 [Term] id: PATO:0001858 @@ -12997,9 +12718,7 @@ subset: value_slim synonym: "high coordination" EXACT [] is_a: PATO:0000769 ! coordinated is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000769 ! coordinated -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001860 ! decreased coordination +property_value: RO:0002604 PATO:0001860 [Term] id: PATO:0001860 @@ -13010,9 +12729,7 @@ subset: value_slim synonym: "low coordination" EXACT [] is_a: PATO:0000769 ! coordinated is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000769 ! coordinated -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001859 ! increased coordination +property_value: RO:0002604 PATO:0001859 [Term] id: PATO:0001861 @@ -13023,7 +12740,7 @@ subset: value_slim synonym: "fascicled" EXACT [] is_a: PATO:0002013 ! fasciculation disjoint_from: PATO:0001959 ! defasciculated -relationship: is_opposite_of PATO:0001959 ! defasciculated +property_value: RO:0002604 PATO:0001959 [Term] id: PATO:0001862 @@ -13042,7 +12759,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0001309 ! duration -relationship: is_opposite_of PATO:0000389 ! acute +property_value: RO:0002604 PATO:0000389 [Term] id: PATO:0001865 @@ -13239,7 +12956,7 @@ subset: attribute_slim subset: disposition_slim is_a: PATO:0001018 ! physical quality disjoint_from: PATO:0001886 ! hydrophilicity -relationship: is_opposite_of PATO:0001886 ! hydrophilicity +property_value: RO:0002604 PATO:0001886 [Term] id: PATO:0001885 @@ -13248,7 +12965,7 @@ def: "A quality inhering in a bearer by virtue of the bearer's lacking affinity subset: disposition_slim subset: value_slim is_a: PATO:0001884 ! hydrophobicity -relationship: is_opposite_of PATO:0001887 ! hydrophilic +property_value: RO:0002604 PATO:0001887 [Term] id: PATO:0001886 @@ -13257,7 +12974,7 @@ def: "A physical quality inhering in a bearer by virtue the bearer's disposition subset: attribute_slim subset: disposition_slim is_a: PATO:0001018 ! physical quality -relationship: is_opposite_of PATO:0001884 ! hydrophobicity +property_value: RO:0002604 PATO:0001884 [Term] id: PATO:0001887 @@ -13266,7 +12983,7 @@ def: "A quality inhering in a bearer by virtue of the bearer's disposition to ha subset: disposition_slim subset: value_slim is_a: PATO:0001886 ! hydrophilicity -relationship: is_opposite_of PATO:0001885 ! hydrophobic +property_value: RO:0002604 PATO:0001885 [Term] id: PATO:0001888 @@ -13317,9 +13034,7 @@ def: "An odor quality of having decreased odor." [PATOC:GVG] subset: value_slim is_a: PATO:0001331 ! odorous is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001331 ! odorous -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001893 ! increased odor +property_value: RO:0002604 PATO:0001893 [Term] id: PATO:0001893 @@ -13328,9 +13043,7 @@ def: "An odor quality of having increased odor." [PATOC:GVG] subset: value_slim is_a: PATO:0001331 ! odorous is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001331 ! odorous -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001892 ! decreased odor +property_value: RO:0002604 PATO:0001892 [Term] id: PATO:0001894 @@ -13352,7 +13065,7 @@ name: unlumenized def: "A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances." [PATOC:MAH] subset: value_slim is_a: PATO:0002014 ! structure, cavities -relationship: is_opposite_of PATO:0001897 ! lumenized +property_value: RO:0002604 PATO:0001897 [Term] id: PATO:0001897 @@ -13361,7 +13074,7 @@ def: "A structure quality inhering in a bearer by virtue of the bearer's having comment: See GO term: GO:0031974 membrane-enclosed lumen [DEF:"The enclosed volume within a sealed membrane or between two sealed membranes"]. subset: value_slim is_a: PATO:0002014 ! structure, cavities -relationship: is_opposite_of PATO:0001896 ! unlumenized +property_value: RO:0002604 PATO:0001896 [Term] id: PATO:0001898 @@ -13370,9 +13083,7 @@ def: "A circumference which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0001648 ! circumference is_a: PATO:0001712 ! increased perimeter -intersection_of: PATO:0001648 ! circumference -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001899 ! decreased circumference +property_value: RO:0002604 PATO:0001899 [Term] id: PATO:0001899 @@ -13381,9 +13092,7 @@ def: "A circumference which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0001648 ! circumference is_a: PATO:0001713 ! decreased perimeter -intersection_of: PATO:0001648 ! circumference -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001898 ! increased circumference +property_value: RO:0002604 PATO:0001898 [Term] id: PATO:0001900 @@ -13391,7 +13100,7 @@ name: front def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction -relationship: is_opposite_of PATO:0001901 ! back +property_value: RO:0002604 PATO:0001901 [Term] id: PATO:0001901 @@ -13399,7 +13108,7 @@ name: back def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction -relationship: is_opposite_of PATO:0001900 ! front +property_value: RO:0002604 PATO:0001900 [Term] id: PATO:0001902 @@ -13583,9 +13292,7 @@ subset: value_slim synonym: "high fluorescence" EXACT [] is_a: PATO:0001290 ! fluorescent is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001290 ! fluorescent -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001927 ! decreased fluorescence +property_value: RO:0002604 PATO:0001927 [Term] id: PATO:0001927 @@ -13595,9 +13302,7 @@ subset: value_slim synonym: "low fluorescence" EXACT [] is_a: PATO:0001290 ! fluorescent is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001290 ! fluorescent -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001926 ! increased fluorescence +property_value: RO:0002604 PATO:0001926 [Term] id: PATO:0001928 @@ -13622,7 +13327,7 @@ name: variant shape def: "A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape." [PATOC:GVG] subset: value_slim is_a: PATO:0001929 ! variability of shape -relationship: is_opposite_of PATO:0001931 ! invariant shape +property_value: RO:0002604 PATO:0001931 [Term] id: PATO:0001931 @@ -13630,7 +13335,7 @@ name: invariant shape def: "A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape." [PATOC:GVG] subset: value_slim is_a: PATO:0001929 ! variability of shape -relationship: is_opposite_of PATO:0001930 ! variant shape +property_value: RO:0002604 PATO:0001930 [Term] id: PATO:0001932 @@ -13826,11 +13531,8 @@ def: "A variability of size which is relatively low." [PATOC:GVG] subset: value_slim synonym: "low variability of size" EXACT [] is_a: PATO:0001956 ! variability of size -is_a: PATO:0002302 ! decreased process quality -is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001956 ! variability of size -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001958 ! increased variability of size +is_a: PATO:0002301 ! decreased quality +property_value: RO:0002604 PATO:0001958 [Term] id: PATO:0001958 @@ -13839,11 +13541,8 @@ def: "A variability of size which is relatively high." [PATOC:GVG] subset: value_slim synonym: "high variability of size" EXACT [] is_a: PATO:0001956 ! variability of size -is_a: PATO:0002304 ! increased process quality -is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001956 ! variability of size -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001957 ! decreased variability of size +is_a: PATO:0002300 ! increased quality +property_value: RO:0002604 PATO:0001957 [Term] id: PATO:0001959 @@ -13851,7 +13550,7 @@ name: defasciculated def: "A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated." [PATOC:mw] subset: value_slim is_a: PATO:0002013 ! fasciculation -relationship: is_opposite_of PATO:0001861 ! fasciculated +property_value: RO:0002604 PATO:0001861 [Term] id: PATO:0001960 @@ -13966,7 +13665,7 @@ name: unserrated def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex." [ISBN:0881923214] subset: value_slim is_a: PATO:0001976 ! serration -relationship: is_opposite_of PATO:0001206 ! serrated +property_value: RO:0002604 PATO:0001206 [Term] id: PATO:0001976 @@ -14115,6 +13814,7 @@ id: PATO:0001995 name: organismal quality def: "A quality that inheres in an entire organism or part of an organism." [PATOC:CJM] is_a: PATO:0001241 ! physical object quality +disjoint_from: PATO:0002003 ! population quality [Term] id: PATO:0001997 @@ -14130,9 +13830,7 @@ synonym: "reduced" RELATED [] synonym: "subnumerary" RELATED [] is_a: PATO:0000467 ! present is_a: PATO:0002301 ! decreased quality -intersection_of: PATO:0000070 ! amount -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000470 ! increased amount +property_value: RO:0002604 PATO:0000470 [Term] id: PATO:0001998 @@ -14173,9 +13871,7 @@ synonym: "has decreased number of" EXACT [] synonym: "has fewer physical parts of type" EXACT [] is_a: PATO:0001999 ! lacks parts or has fewer parts of type is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001999 ! lacks parts or has fewer parts of type -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002002 ! has extra parts of type +property_value: RO:0002604 PATO:0002002 [Term] id: PATO:0002002 @@ -14191,9 +13887,7 @@ synonym: "having supernumerary physical parts" EXACT [] synonym: "increased number of" EXACT [] is_a: PATO:0002083 ! altered number of is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002083 ! altered number of -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002001 ! has fewer parts of type +property_value: RO:0002604 PATO:0002001 [Term] id: PATO:0002003 @@ -14235,7 +13929,7 @@ subset: attribute_slim xref: Image:http\://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png is_a: PATO:0002266 ! 3-D shape relationship: has_cross_section PATO:0002006 ! 2-D shape -relationship: is_opposite_of PATO:0002008 ! concave 3-D shape +property_value: RO:0002604 PATO:0002008 [Term] id: PATO:0002008 @@ -14245,7 +13939,7 @@ subset: attribute_slim xref: Image:http\://en.wikipedia.org/wiki/Image\:Convex_polygon_illustration2.png is_a: PATO:0002266 ! 3-D shape relationship: has_part PATO:0001857 ! concave -relationship: is_opposite_of PATO:0002007 ! convex 3-D shape +property_value: RO:0002604 PATO:0002007 [Term] id: PATO:0002009 @@ -14303,14 +13997,14 @@ id: PATO:0002017 name: increased magnitude synonym: "high magnitude" EXACT [] is_a: PATO:0002016 ! magnitude -relationship: is_opposite_of PATO:0002018 ! decreased magnitude +property_value: RO:0002604 PATO:0002018 [Term] id: PATO:0002018 name: decreased magnitude synonym: "low magnitude" EXACT [] is_a: PATO:0002016 ! magnitude -relationship: is_opposite_of PATO:0002017 ! increased magnitude +property_value: RO:0002604 PATO:0002017 [Term] id: PATO:0002019 @@ -14373,7 +14067,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence -relationship: is_opposite_of PATO:0001818 ! progressive +property_value: RO:0002604 PATO:0001818 created_by: george gkoutos creation_date: 2008-12-18T12:49:19Z @@ -14397,9 +14091,7 @@ subset: value_slim synonym: "low osmolality" EXACT [] is_a: PATO:0002027 ! osmolality is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002027 ! osmolality -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002029 ! increased osmolality +property_value: RO:0002604 PATO:0002029 created_by: george creation_date: 2009-01-27T10:55:33Z @@ -14412,9 +14104,7 @@ subset: value_slim synonym: "high osmolality" EXACT [] is_a: PATO:0002027 ! osmolality is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002027 ! osmolality -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002028 ! decreased osmolality +property_value: RO:0002604 PATO:0002028 created_by: george creation_date: 2009-01-27T10:56:19Z @@ -14506,7 +14196,7 @@ def: "A structural quality inhering in a bearer whose structure which does not d subset: value_slim synonym: "not degenerate" EXACT [] is_a: PATO:0002037 ! degeneration -relationship: is_opposite_of PATO:0000639 ! degenerate +property_value: RO:0002604 PATO:0000639 created_by: george creation_date: 2009-02-03T11:14:54Z @@ -14516,7 +14206,7 @@ name: biconcave def: "A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces." [PATOC:GVG] subset: value_slim is_a: PATO:0001857 ! concave -relationship: is_opposite_of PATO:0002040 ! biconvex +property_value: RO:0002604 PATO:0002040 [Term] id: PATO:0002040 @@ -14525,7 +14215,7 @@ def: "A shape quality inhering in a bearer by virtue of the bearer's being conve subset: value_slim xref: Image:http\://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx is_a: PATO:0001355 ! convex -relationship: is_opposite_of PATO:0002039 ! biconcave +property_value: RO:0002604 PATO:0002039 [Term] id: PATO:0002041 @@ -14543,9 +14233,7 @@ subset: value_slim synonym: "low anterior-posterior diameter" EXACT [] is_a: PATO:0001715 ! decreased diameter is_a: PATO:0002041 ! anterior-posterior diameter -intersection_of: PATO:0002041 ! anterior-posterior diameter -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002043 ! increased anterior-posterior diameter +property_value: RO:0002604 PATO:0002043 [Term] id: PATO:0002043 @@ -14555,9 +14243,7 @@ subset: value_slim synonym: "high anterior-posterior diameter" EXACT [] is_a: PATO:0001714 ! increased diameter is_a: PATO:0002041 ! anterior-posterior diameter -intersection_of: PATO:0002041 ! anterior-posterior diameter -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002042 ! decreased anterior-posterior diameter +property_value: RO:0002604 PATO:0002042 [Term] id: PATO:0002044 @@ -14637,9 +14323,7 @@ def: "An occurrence which is relatively high." [PATOC:GVG] synonym: "increased incidence" EXACT [] is_a: PATO:0000057 ! occurrence is_a: PATO:0002304 ! increased process quality -intersection_of: PATO:0000057 ! occurrence -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002052 ! decreased occurrence +property_value: RO:0002604 PATO:0002052 created_by: George Gkoutos creation_date: 2009-03-26T11:10:11Z @@ -14650,9 +14334,7 @@ def: "An occurrence which is relatively low." [PATOC:GVG] synonym: "decreased incidence" EXACT [] is_a: PATO:0000057 ! occurrence is_a: PATO:0002302 ! decreased process quality -intersection_of: PATO:0000057 ! occurrence -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002051 ! increased occurrence +property_value: RO:0002604 PATO:0002051 created_by: George Gkoutos creation_date: 2009-03-26T11:12:35Z @@ -14684,9 +14366,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001362 ! fragile is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001362 ! fragile -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002056 ! decreased fragility +property_value: RO:0002604 PATO:0002056 created_by: George Gkoutos creation_date: 2009-03-26T04:01:37Z @@ -14698,9 +14378,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001362 ! fragile is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001362 ! fragile -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002055 ! increased fragility +property_value: RO:0002604 PATO:0002055 created_by: George Gkoutos creation_date: 2009-03-26T04:02:14Z @@ -14711,9 +14389,7 @@ def: "An area which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0000586 ! increased size is_a: PATO:0001323 ! area -intersection_of: PATO:0001323 ! area -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002058 ! decreased area +property_value: RO:0002604 PATO:0002058 created_by: George Gkoutos creation_date: 2009-03-30T04:11:43Z @@ -14724,9 +14400,7 @@ def: "An area which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0000587 ! decreased size is_a: PATO:0001323 ! area -intersection_of: PATO:0001323 ! area -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002057 ! increased area +property_value: RO:0002604 PATO:0002057 created_by: George Gkoutos creation_date: 2009-03-30T04:12:11Z @@ -14815,7 +14489,7 @@ def: "A spatial pattern inhering in a bearer by virtue of the bearer's exhibitin subset: mpath_slim subset: value_slim is_a: PATO:0002067 ! stratification -relationship: is_opposite_of PATO:0002069 ! unstratified +property_value: RO:0002604 PATO:0002069 created_by: George Gkoutos creation_date: 2009-07-01T02:31:53Z @@ -14826,7 +14500,7 @@ def: "A spatial pattern inhering in a bearer by virtue of the bearer's lacking a subset: mpath_slim subset: value_slim is_a: PATO:0002067 ! stratification -relationship: is_opposite_of PATO:0002068 ! stratified +property_value: RO:0002604 PATO:0002068 created_by: George Gkoutos creation_date: 2009-07-01T02:33:41Z @@ -14851,9 +14525,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002070 ! affinity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002070 ! affinity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002072 ! decreased affinity +property_value: RO:0002604 PATO:0002072 created_by: George Gkoutos creation_date: 2009-09-18T01:29:42Z @@ -14866,9 +14538,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002070 ! affinity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002070 ! affinity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002071 ! increased affinity +property_value: RO:0002604 PATO:0002071 created_by: George Gkoutos creation_date: 2009-09-18T01:30:11Z @@ -14893,9 +14563,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002073 ! avidity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002073 ! avidity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002075 ! decreased avidity +property_value: RO:0002604 PATO:0002075 created_by: George Gkoutos creation_date: 2009-09-18T01:45:56Z @@ -14908,9 +14576,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002073 ! avidity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002073 ! avidity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002074 ! increased avidity +property_value: RO:0002604 PATO:0002074 created_by: George Gkoutos creation_date: 2009-09-18T01:45:59Z @@ -15135,7 +14801,7 @@ def: "A cellular quality inhering in a bearer by virtue of its stable specializa subset: mpath_slim subset: value_slim is_a: PATO:0001397 ! cellular potency -relationship: is_opposite_of PATO:0002100 ! undifferentiated +property_value: RO:0002604 PATO:0002100 created_by: george creation_date: 2009-10-05T12:58:54Z @@ -15146,7 +14812,7 @@ def: "A cellular quality inhering in a bearer by virtue of having not yet acquir subset: mpath_slim subset: value_slim is_a: PATO:0001397 ! cellular potency -relationship: is_opposite_of PATO:0002099 ! differentiated +property_value: RO:0002604 PATO:0002099 created_by: george creation_date: 2009-10-05T12:59:21Z @@ -15275,7 +14941,7 @@ subset: value_slim synonym: "permeable" RELATED [] synonym: "pierced" RELATED [] is_a: PATO:0002014 ! structure, cavities -relationship: is_opposite_of PATO:0001821 ! imperforate +property_value: RO:0002604 PATO:0001821 created_by: george creation_date: 2009-10-05T03:37:05Z @@ -15554,7 +15220,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002138 ! edibility disjoint_from: PATO:0002140 ! inedible -relationship: is_opposite_of PATO:0002140 ! inedible +property_value: RO:0002604 PATO:0002140 created_by: george creation_date: 2009-10-26T01:21:34Z @@ -15566,7 +15232,7 @@ subset: disposition_slim subset: relational_slim subset: value_slim is_a: PATO:0002138 ! edibility -relationship: is_opposite_of PATO:0002139 ! edible +property_value: RO:0002604 PATO:0002139 created_by: george creation_date: 2009-10-26T01:22:27Z @@ -15603,9 +15269,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002136 ! radiopacity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002136 ! radiopacity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002145 ! decreased radiopacity +property_value: RO:0002604 PATO:0002145 created_by: george creation_date: 2009-10-30T03:30:39Z @@ -15617,9 +15281,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002136 ! radiopacity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002136 ! radiopacity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002144 ! increased radiopacity +property_value: RO:0002604 PATO:0002144 created_by: george creation_date: 2009-10-30T03:31:31Z @@ -15641,9 +15303,7 @@ subset: value_slim synonym: "attenuated" EXACT [] is_a: PATO:0002146 ! virulence is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002146 ! virulence -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002148 ! increased virulence +property_value: RO:0002604 PATO:0002148 created_by: george creation_date: 2009-10-30T05:05:02Z @@ -15654,9 +15314,7 @@ def: "A virulence that is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0002146 ! virulence is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002146 ! virulence -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002147 ! reduced virulence +property_value: RO:0002604 PATO:0002147 created_by: george creation_date: 2009-10-30T05:13:10Z @@ -15773,8 +15431,6 @@ def: "A concave quality inhering in a bearer by virtue of the bearer's forming o subset: value_slim is_a: PATO:0001594 ! arched is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001594 ! arched -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal created_by: george creation_date: 2009-11-26T02:34:06Z @@ -16050,7 +15706,7 @@ def: "A molecular quality that inheres in a molecular entity when it possesses a subset: value_slim is_a: PATO:0002190 ! aromaticity disjoint_from: PATO:0002192 ! non-aromatic -relationship: is_opposite_of PATO:0002192 ! non-aromatic +property_value: RO:0002604 PATO:0002192 created_by: George Gkoutos creation_date: 2010-03-10T03:25:59Z @@ -16060,7 +15716,7 @@ name: non-aromatic def: "A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic." [PATOC:JH] subset: value_slim is_a: PATO:0002190 ! aromaticity -relationship: is_opposite_of PATO:0002191 ! aromatic +property_value: RO:0002604 PATO:0002191 created_by: George Gkoutos creation_date: 2010-03-10T03:26:41Z @@ -16092,7 +15748,7 @@ def: "A quality which inheres in a molecular entity by virtue of the molecular e subset: value_slim is_a: PATO:0002193 ! electric charge disjoint_from: PATO:0002196 ! negative charge -relationship: is_opposite_of PATO:0002196 ! negative charge +property_value: RO:0002604 PATO:0002196 created_by: George Gkoutos creation_date: 2010-03-10T03:30:06Z @@ -16102,7 +15758,7 @@ name: negative charge def: "A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge." [PATOC:JH] subset: value_slim is_a: PATO:0002193 ! electric charge -relationship: is_opposite_of PATO:0002195 ! positive charge +property_value: RO:0002604 PATO:0002195 created_by: George Gkoutos creation_date: 2010-03-10T03:30:39Z @@ -16348,7 +16004,7 @@ def: "A quality inhering in a protein or a molecule by virtue of the bearer's ha subset: value_slim is_a: PATO:0002262 ! phosphorylation disjoint_from: PATO:0002263 ! dephosphorylated -relationship: is_opposite_of PATO:0002263 ! dephosphorylated +property_value: RO:0002604 PATO:0002263 created_by: george creation_date: 2010-07-09T01:50:14Z @@ -16360,9 +16016,7 @@ subset: value_slim synonym: "hyperphosphorylated" EXACT [] is_a: PATO:0002220 ! phosphorylated is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002220 ! phosphorylated -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002222 ! decreased phosphorylation +property_value: RO:0002604 PATO:0002222 created_by: george creation_date: 2010-07-09T01:51:52Z @@ -16374,9 +16028,7 @@ subset: value_slim synonym: "hypophosporylated" EXACT [] is_a: PATO:0002220 ! phosphorylated is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002220 ! phosphorylated -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002221 ! increased phosphorylation +property_value: RO:0002604 PATO:0002221 created_by: george creation_date: 2010-07-09T01:54:22Z @@ -16603,9 +16255,7 @@ subset: value_slim synonym: "increased force amplitude" EXACT [] is_a: PATO:0001035 ! force is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001035 ! force -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002246 ! decreased force +property_value: RO:0002604 PATO:0002246 created_by: george creation_date: 2010-08-04T11:12:20Z @@ -16617,9 +16267,7 @@ subset: value_slim synonym: "decreased force amplitude" EXACT [] is_a: PATO:0001035 ! force is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001035 ! force -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002245 ! increased force +property_value: RO:0002604 PATO:0002245 created_by: george creation_date: 2010-08-04T11:13:13Z @@ -16642,7 +16290,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0002247 ! degree of pigmentation disjoint_from: PATO:0002249 ! unpigmented -relationship: is_opposite_of PATO:0002249 ! unpigmented +property_value: RO:0002604 PATO:0002249 created_by: george creation_date: 2010-08-09T04:16:49Z @@ -16654,7 +16302,7 @@ subset: mpath_slim subset: value_slim synonym: "depigmented" EXACT [] is_a: PATO:0002247 ! degree of pigmentation -relationship: is_opposite_of PATO:0002248 ! pigmented +property_value: RO:0002604 PATO:0002248 created_by: george creation_date: 2010-08-09T04:17:04Z @@ -16667,9 +16315,7 @@ subset: value_slim synonym: "hyperpigmented" EXACT [] is_a: PATO:0002248 ! pigmented is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002248 ! pigmented -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002251 ! decreased pigmentation +property_value: RO:0002604 PATO:0002251 created_by: george creation_date: 2010-08-09T04:17:19Z @@ -16682,9 +16328,7 @@ subset: value_slim synonym: "hypopigmented" EXACT [] is_a: PATO:0002248 ! pigmented is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002248 ! pigmented -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002250 ! increased pigmentation +property_value: RO:0002604 PATO:0002250 created_by: george creation_date: 2010-08-09T04:17:37Z @@ -16808,7 +16452,7 @@ name: dephosphorylated def: "A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group." [url:http\://en.wikipedia.org/wiki/Dephosphorylation] subset: value_slim is_a: PATO:0002262 ! phosphorylation -relationship: is_opposite_of PATO:0002220 ! phosphorylated +property_value: RO:0002604 PATO:0002220 created_by: george creation_date: 2010-09-16T09:04:21Z @@ -16876,7 +16520,7 @@ subset: relational_slim subset: value_slim synonym: "accumulated" EXACT [] is_a: PATO:0002269 ! accumulation -relationship: is_opposite_of PATO:0002271 ! decreased accumulation +property_value: RO:0002604 PATO:0002271 created_by: george creation_date: 2010-10-26T02:00:20Z @@ -16887,7 +16531,7 @@ def: "An accumulation which is relative low." [PATOC:GVG] subset: relational_slim subset: value_slim is_a: PATO:0002269 ! accumulation -relationship: is_opposite_of PATO:0002270 ! increased accumulation +property_value: RO:0002604 PATO:0002270 created_by: george creation_date: 2010-10-26T02:04:45Z @@ -16988,9 +16632,7 @@ def: "A mobility which is relative high." [PATO:GVG] subset: value_slim is_a: PATO:0000299 ! mobile is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000299 ! mobile -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002283 ! decreased mobility +property_value: RO:0002604 PATO:0002283 created_by: george creation_date: 2011-03-09T09:16:03Z @@ -17001,9 +16643,7 @@ def: "A mobility which is relative low." [PATOC:GVG] subset: value_slim is_a: PATO:0000299 ! mobile is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000299 ! mobile -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002282 ! increased mobility +property_value: RO:0002604 PATO:0002282 created_by: george creation_date: 2011-03-09T09:16:47Z @@ -17023,7 +16663,7 @@ name: increased branchiness def: "Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:CVS] subset: value_slim is_a: PATO:0000402 ! branched -relationship: is_opposite_of PATO:0002286 ! decreased branchiness +property_value: RO:0002604 PATO:0002286 created_by: george creation_date: 2011-03-10T09:07:57Z @@ -17033,7 +16673,7 @@ name: decreased branchiness def: "Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:CVS] subset: value_slim is_a: PATO:0000402 ! branched -relationship: is_opposite_of PATO:0002285 ! increased branchiness +property_value: RO:0002604 PATO:0002285 created_by: george creation_date: 2011-03-10T09:08:37Z @@ -17044,9 +16684,7 @@ def: "An elasticity which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0001171 ! elastic is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001171 ! elastic -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002288 ! decreased elasticity +property_value: RO:0002604 PATO:0002288 created_by: George Gkoutos creation_date: 2011-03-30T11:50:21Z @@ -17057,9 +16695,7 @@ def: "An elasticity which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0001171 ! elastic is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001171 ! elastic -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002287 ! increased elasticity +property_value: RO:0002604 PATO:0002287 created_by: George Gkoutos creation_date: 2011-03-30T11:50:39Z @@ -17143,9 +16779,7 @@ def: "A cellular motility which is lower relative to the normal or average." [PA subset: value_slim is_a: PATO:0001488 ! cellular motility is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001488 ! cellular motility -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002298 ! increased cellular motility +property_value: RO:0002604 PATO:0002298 [Term] id: PATO:0002298 @@ -17154,9 +16788,7 @@ def: "A cellular motility which is higher relative to the normal or average." [P subset: value_slim is_a: PATO:0001488 ! cellular motility is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001488 ! cellular motility -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002297 ! decreased cellular motility +property_value: RO:0002604 PATO:0002297 [Term] id: PATO:0002299 @@ -17175,10 +16807,8 @@ id: PATO:0002300 name: increased quality def: "A quality that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0000069 ! deviation(from_normal) -intersection_of: PATO:0000001 ! quality -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002301 ! decreased quality +property_value: RO:0002604 PATO:0002301 created_by: George Gkoutos creation_date: 2011-06-16T06:39:43Z @@ -17187,10 +16817,8 @@ id: PATO:0002301 name: decreased quality def: "A quality that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0000069 ! deviation(from_normal) -intersection_of: PATO:0000001 ! quality -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002300 ! increased quality +property_value: RO:0002604 PATO:0002300 created_by: George Gkoutos creation_date: 2011-06-16T06:40:15Z @@ -17200,9 +16828,7 @@ name: decreased process quality def: "A quality of a process that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0001236 ! process quality is_a: PATO:0002301 ! decreased quality -intersection_of: PATO:0001236 ! process quality -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002304 ! increased process quality +property_value: RO:0002604 PATO:0002304 created_by: George Gkoutos creation_date: 2011-06-16T06:50:59Z @@ -17212,9 +16838,7 @@ name: decreased object quality def: "A quality of an object that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality is_a: PATO:0002301 ! decreased quality -intersection_of: PATO:0001241 ! physical object quality -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002305 ! increased object quality +property_value: RO:0002604 PATO:0002305 created_by: George Gkoutos creation_date: 2011-06-16T06:51:54Z @@ -17224,9 +16848,7 @@ name: increased process quality def: "A quality of a process that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0001236 ! process quality is_a: PATO:0002300 ! increased quality -intersection_of: PATO:0001236 ! process quality -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002302 ! decreased process quality +property_value: RO:0002604 PATO:0002302 created_by: George Gkoutos creation_date: 2011-06-16T06:53:08Z @@ -17236,9 +16858,7 @@ name: increased object quality def: "A quality of an object that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality is_a: PATO:0002300 ! increased quality -intersection_of: PATO:0001241 ! physical object quality -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002303 ! decreased object quality +property_value: RO:0002604 PATO:0002303 created_by: George Gkoutos creation_date: 2011-06-16T06:54:01Z @@ -17387,7 +17007,7 @@ creation_date: 2011-10-12T12:49:06Z id: PATO:0002321 name: hypoelliptic is_a: PATO:0002318 ! superelliptic -relationship: is_opposite_of PATO:0002322 ! hyperelliptic +property_value: RO:0002604 PATO:0002322 created_by: George Gkoutos creation_date: 2011-10-12T12:50:59Z @@ -17395,7 +17015,7 @@ creation_date: 2011-10-12T12:50:59Z id: PATO:0002322 name: hyperelliptic is_a: PATO:0002318 ! superelliptic -relationship: is_opposite_of PATO:0002321 ! hypoelliptic +property_value: RO:0002604 PATO:0002321 created_by: George Gkoutos creation_date: 2011-10-12T12:51:19Z @@ -17447,9 +17067,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0001475 ! increased position is_a: PATO:0002326 ! angle -intersection_of: PATO:0002326 ! angle -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002328 ! decreased angle to +property_value: RO:0002604 PATO:0002328 created_by: George Gkoutos creation_date: 2011-11-23T12:06:38Z @@ -17461,9 +17079,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0001476 ! decreased position is_a: PATO:0002326 ! angle -intersection_of: PATO:0002326 ! angle -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002327 ! increased angle to +property_value: RO:0002604 PATO:0002327 created_by: George Gkoutos creation_date: 2011-11-23T12:06:54Z @@ -17492,7 +17108,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer exhibiting subset: value_slim synonym: "resinous" RELATED [] is_a: PATO:0001431 ! adhesivity -relationship: is_opposite_of PATO:0002332 ! non-adhesive +property_value: RO:0002604 PATO:0002332 created_by: gkoutos creation_date: 2012-01-31T12:28:16Z @@ -17503,7 +17119,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer not exhibi subset: value_slim synonym: "non-resinous" RELATED [] is_a: PATO:0001431 ! adhesivity -relationship: is_opposite_of PATO:0002331 ! adhesive +property_value: RO:0002604 PATO:0002331 created_by: gkoutos creation_date: 2012-01-31T12:28:57Z @@ -17514,9 +17130,7 @@ def: "A adhesivity which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0002305 ! increased object quality is_a: PATO:0002331 ! adhesive -intersection_of: PATO:0002331 ! adhesive -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002334 ! decreased adhesivity +property_value: RO:0002604 PATO:0002334 created_by: gkoutos creation_date: 2012-01-31T12:32:43Z @@ -17526,9 +17140,7 @@ name: decreased adhesivity def: "A adhesivity which is relatively low." [PATOC:GVG] is_a: PATO:0002303 ! decreased object quality is_a: PATO:0002331 ! adhesive -intersection_of: PATO:0002331 ! adhesive -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002333 ! increased adhesivity +property_value: RO:0002604 PATO:0002333 created_by: gkoutos creation_date: 2012-01-31T12:42:22Z @@ -17709,7 +17321,7 @@ name: active def: "A quality of an physical object that is currently realizing one of its functions." [PATOC:RH] subset: attribute_slim is_a: PATO:0002353 ! activation quality -relationship: is_opposite_of PATO:0002355 ! inactive +property_value: RO:0002604 PATO:0002355 created_by: gkoutos creation_date: 2012-01-31T04:52:04Z @@ -17719,7 +17331,7 @@ name: inactive def: "A quality of a physical object that is currently realizing none of its functions." [PATOC:RH] subset: attribute_slim is_a: PATO:0002353 ! activation quality -relationship: is_opposite_of PATO:0002354 ! active +property_value: RO:0002604 PATO:0002354 created_by: gkoutos creation_date: 2012-01-31T04:52:14Z @@ -17780,9 +17392,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002305 ! increased object quality is_a: PATO:0002360 ! tendency -intersection_of: PATO:0002360 ! tendency -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002362 ! decreased tendency +property_value: RO:0002604 PATO:0002362 created_by: gkoutos creation_date: 2012-03-16T06:31:57Z @@ -17795,9 +17405,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002303 ! decreased object quality is_a: PATO:0002360 ! tendency -intersection_of: PATO:0002360 ! tendency -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002361 ! increased tendency +property_value: RO:0002604 PATO:0002361 created_by: gkoutos creation_date: 2012-03-16T06:32:57Z @@ -17816,7 +17424,7 @@ name: shortened def: "A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width." [PATOC:GVG] subset: value_slim is_a: PATO:0000052 ! shape -relationship: is_opposite_of PATO:0001154 ! elongated +property_value: RO:0002604 PATO:0001154 created_by: gkoutos creation_date: 2012-04-18T06:31:29Z @@ -17926,7 +17534,7 @@ def: "A structure quality inhering in a bearer by virtue of the bearer's being f subset: value_slim synonym: "air-filled" EXACT [] is_a: PATO:0002014 ! structure, cavities -relationship: is_opposite_of PATO:0002377 ! uninflated +property_value: RO:0002604 PATO:0002377 created_by: gkoutos creation_date: 2012-07-05T02:55:10Z @@ -17936,7 +17544,7 @@ name: uninflated def: "A structure quality inhering in a bearer by virtue of the bearer's being not filed with air." [PATOC:CVS] subset: value_slim is_a: PATO:0002014 ! structure, cavities -relationship: is_opposite_of PATO:0002376 ! inflated +property_value: RO:0002604 PATO:0002376 created_by: gkoutos creation_date: 2012-07-05T02:56:07Z @@ -17984,9 +17592,7 @@ def: "A waxiness which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0002305 ! increased object quality is_a: PATO:0002381 ! waxiness -intersection_of: PATO:0002381 ! waxiness -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002383 ! decreased waxiness +property_value: RO:0002604 PATO:0002383 created_by: gkoutos creation_date: 2012-07-05T03:18:03Z @@ -17996,9 +17602,7 @@ name: decreased waxiness def: "A waxiness which is relatively low." [] is_a: PATO:0002303 ! decreased object quality is_a: PATO:0002381 ! waxiness -intersection_of: PATO:0002381 ! waxiness -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002382 ! increased waxiness +property_value: RO:0002604 PATO:0002382 created_by: gkoutos creation_date: 2012-07-05T03:18:14Z @@ -18097,9 +17701,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0000515 ! tolerant to is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000515 ! tolerant to -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002394 ! decreased tolerance to +property_value: RO:0002604 PATO:0002394 created_by: gkoutos creation_date: 2012-11-15T05:32:07Z @@ -18111,9 +17713,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0000515 ! tolerant to is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000515 ! tolerant to -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002393 ! increased tolerance to +property_value: RO:0002604 PATO:0002393 created_by: gkoutos creation_date: 2012-11-15T05:33:05Z @@ -18569,7 +18169,7 @@ name: ornamented def: "A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures." [PATOC:AD] subset: value_slim is_a: PATO:0002440 ! ornamentation -relationship: is_opposite_of PATO:0002442 ! unornamented +property_value: RO:0002604 PATO:0002442 created_by: gkoutos creation_date: 2013-01-29T10:59:42Z @@ -18579,7 +18179,7 @@ name: unornamented def: "A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures." [PATOC:AD] subset: value_slim is_a: PATO:0002440 ! ornamentation -relationship: is_opposite_of PATO:0002441 ! ornamented +property_value: RO:0002604 PATO:0002441 created_by: gkoutos creation_date: 2013-01-29T11:00:20Z @@ -18674,7 +18274,7 @@ name: decondensed def: "A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed." [PATOC:JL] subset: value_slim is_a: PATO:0000141 ! structure -relationship: is_opposite_of PATO:0001485 ! condensed +property_value: RO:0002604 PATO:0001485 created_by: gkoutos creation_date: 2013-04-08T08:43:31Z @@ -18850,9 +18450,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer's increase subset: value_slim is_a: PATO:0002242 ! velocity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002242 ! velocity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002472 ! decreased velocity +property_value: RO:0002604 PATO:0002472 created_by: gkoutos creation_date: 2013-09-15T12:03:45Z @@ -18863,9 +18461,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer's decrease subset: value_slim is_a: PATO:0002242 ! velocity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002242 ! velocity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002471 ! increased velocity +property_value: RO:0002604 PATO:0002471 created_by: gkoutos creation_date: 2013-09-15T12:05:06Z @@ -19050,7 +18646,7 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "anterodorsally directed" EXACT [] is_a: PATO:0000133 ! orientation -relationship: is_opposite_of PATO:0002526 ! anterodistal orientation +property_value: RO:0002604 PATO:0002526 created_by: gkoutos creation_date: 2013-10-10T05:12:15Z @@ -19081,7 +18677,7 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "distally directed" EXACT [] is_a: PATO:0000133 ! orientation -relationship: is_opposite_of PATO:0002495 ! dorsal orientation +property_value: RO:0002604 PATO:0002495 created_by: gkoutos creation_date: 2013-10-10T05:14:37Z @@ -19092,7 +18688,7 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "dorsally directed" EXACT [] is_a: PATO:0000133 ! orientation -relationship: is_opposite_of PATO:0002494 ! distal orientation +property_value: RO:0002604 PATO:0002494 created_by: gkoutos creation_date: 2013-10-10T05:15:24Z @@ -19183,7 +18779,7 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "posterodorsally directed" EXACT [] is_a: PATO:0000133 ! orientation -relationship: is_opposite_of PATO:0002527 ! posterodistal orientation +property_value: RO:0002604 PATO:0002527 created_by: gkoutos creation_date: 2013-10-10T05:19:36Z @@ -19391,7 +18987,7 @@ name: anterodistal orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally." [PATOC:EJS] synonym: "antero-distal orientation" EXACT [] is_a: PATO:0000133 ! orientation -relationship: is_opposite_of PATO:0002491 ! anterodorsal orientation +property_value: RO:0002604 PATO:0002491 created_by: segerdel creation_date: 2014-03-11T11:28:39Z @@ -19401,7 +18997,7 @@ name: posterodistal orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally." [PATOC:EJS] synonym: "postero-distal orientation" EXACT [] is_a: PATO:0000133 ! orientation -relationship: is_opposite_of PATO:0002504 ! posterodorsal orientation +property_value: RO:0002604 PATO:0002504 created_by: segerdel creation_date: 2014-03-11T11:29:22Z @@ -19689,7 +19285,7 @@ name: complete structure def: "A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts." [PATOC:WD] subset: value_slim is_a: PATO:0000141 ! structure -relationship: is_opposite_of PATO:0005013 ! incomplete structure +property_value: RO:0002604 PATO:0005013 created_by: wasila.dahdul creation_date: 2014-09-25T15:11:47Z @@ -19699,7 +19295,7 @@ name: incomplete structure def: "A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities." [PATOC:WD] subset: value_slim is_a: PATO:0000141 ! structure -relationship: is_opposite_of PATO:0005012 ! complete structure +property_value: RO:0002604 PATO:0005012 created_by: wasila.dahdul creation_date: 2014-09-25T15:12:35Z @@ -19836,8 +19432,6 @@ name: increased propagation velocity def: "A propagation velocity that is higher than normal." [orcid:0000-0002-7073-9172] is_a: PATO:0002304 ! increased process quality is_a: PATO:0010002 ! propagation velocity -intersection_of: PATO:0010002 ! propagation velocity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal created_by: dos creation_date: 2019-07-18T18:24:25Z @@ -19847,8 +19441,6 @@ name: decreased propagation velocity def: "A propagation velocity that is lower than normal." [orcid:0000-0002-7073-9172] is_a: PATO:0002302 ! decreased process quality is_a: PATO:0010002 ! propagation velocity -intersection_of: PATO:0010002 ! propagation velocity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal created_by: dos creation_date: 2019-07-18T18:24:36Z @@ -19869,8 +19461,6 @@ subset: absent_slim subset: value_slim is_a: PATO:0000462 ! absent is_a: PATO:0000639 ! degenerate -intersection_of: PATO:0000462 ! absent -intersection_of: PATO:0000639 ! degenerate created_by: cjm [Term] @@ -19888,9 +19478,7 @@ def: "A decrease in the ability of a process to produce its output." [PATOC:Port subset: value_slim is_a: PATO:0002302 ! decreased process quality is_a: PATO:0015002 ! process efficacy -intersection_of: PATO:0015002 ! process efficacy -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015004 ! increased efficacy +property_value: RO:0002604 PATO:0015004 created_by: cjm [Term] @@ -19900,9 +19488,7 @@ def: "A increase in the ability of a process to produce its output." [PATOC:Port subset: value_slim is_a: PATO:0002304 ! increased process quality is_a: PATO:0015002 ! process efficacy -intersection_of: PATO:0015002 ! process efficacy -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015003 ! decreased efficacy +property_value: RO:0002604 PATO:0015003 created_by: cjm [Term] @@ -19930,7 +19516,7 @@ id: PATO:0015007 name: prominence def: "A quality inhering in a bearer by virtue of the degree to which the bearers stands out or projects beyond a surface or line." [GOC:CJM] subset: attribute_slim -is_a: PATO:0000057 ! occurrence +is_a: PATO:0000140 ! position [Term] id: PATO:0015008 @@ -19954,9 +19540,7 @@ subset: value_slim synonym: "humid" RELATED [] is_a: PATO:0002305 ! increased object quality is_a: PATO:0015009 ! humidity -intersection_of: PATO:0015009 ! humidity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015011 ! decreased humidity +property_value: RO:0002604 PATO:0015011 [Term] id: PATO:0015011 @@ -19965,9 +19549,7 @@ def: "An decrease in humidity." [https://github.com/pato-ontology/pato/issues/90 subset: value_slim is_a: PATO:0002303 ! decreased object quality is_a: PATO:0015009 ! humidity -intersection_of: PATO:0015009 ! humidity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015010 ! increased humidity +property_value: RO:0002604 PATO:0015010 [Term] id: PATO:0015012 @@ -19991,9 +19573,7 @@ subset: value_slim synonym: "illuminated" RELATED [] is_a: PATO:0002305 ! increased object quality is_a: PATO:0015013 ! degree of illumination -intersection_of: PATO:0015013 ! degree of illumination -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015015 ! decreased degree of illumination +property_value: RO:0002604 PATO:0015015 [Term] id: PATO:0015015 @@ -20002,9 +19582,7 @@ def: "An decrease in illumination." [https://github.com/pato-ontology/pato/issue subset: value_slim is_a: PATO:0002303 ! decreased object quality is_a: PATO:0015013 ! degree of illumination -intersection_of: PATO:0015013 ! degree of illumination -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015014 ! increased degree of illumination +property_value: RO:0002604 PATO:0015014 [Term] id: PATO:0015016 @@ -20056,9 +19634,7 @@ subset: value_slim synonym: "combustible" EXACT [] is_a: PATO:0002305 ! increased object quality is_a: PATO:0015021 ! combustibility -intersection_of: PATO:0015021 ! combustibility -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015023 ! decreased combustibility +property_value: RO:0002604 PATO:0015023 [Term] id: PATO:0015023 @@ -20068,9 +19644,7 @@ subset: value_slim synonym: "noncombustible" RELATED [] is_a: PATO:0002303 ! decreased object quality is_a: PATO:0015021 ! combustibility -intersection_of: PATO:0015021 ! combustibility -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015022 ! increased combustibility +property_value: RO:0002604 PATO:0015022 [Term] id: PATO:0015024 @@ -20079,8 +19653,6 @@ def: "An increase in porosity." [https://github.com/pato-ontology/pato/issues/11 subset: value_slim is_a: PATO:0000973 ! porosity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000973 ! porosity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal [Term] id: PATO:0015025 @@ -20089,9 +19661,7 @@ def: "An decrease in porosity." [https://github.com/pato-ontology/pato/issues/11 subset: value_slim is_a: PATO:0000973 ! porosity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000973 ! porosity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015024 ! increased porosity +property_value: RO:0002604 PATO:0015024 [Term] id: PATO:0015026 @@ -20109,8 +19679,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002305 ! increased object quality is_a: PATO:0015026 ! stability -intersection_of: PATO:0015026 ! stability -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal [Term] id: PATO:0015028 @@ -20120,9 +19688,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002303 ! decreased object quality is_a: PATO:0015026 ! stability -intersection_of: PATO:0015026 ! stability -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015027 ! increased stability +property_value: RO:0002604 PATO:0015027 [Term] id: PATO:0015029 @@ -20180,7 +19746,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer not being synonym: "undrinkable" EXACT [] is_a: PATO:0025000 ! potability disjoint_from: PATO:0025002 ! potable -relationship: is_opposite_of PATO:0025002 ! potable +property_value: RO:0002604 PATO:0025002 created_by: pbuttigieg creation_date: 2015-09-01T16:18:57Z @@ -20190,7 +19756,7 @@ name: potable def: "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration." [Wikipedia:https\://en.wikipedia.org/wiki/Drinking_water] synonym: "drinkable" EXACT [] is_a: PATO:0025000 ! potability -relationship: is_opposite_of PATO:0025001 ! non-potable +property_value: RO:0002604 PATO:0025001 created_by: pbuttigieg creation_date: 2015-09-01T16:19:02Z @@ -20440,16 +20006,12 @@ subset: mpath_slim subset: value_slim is_a: PATO:0000161 ! rate is_a: PATO:0045073 ! normal process quality -intersection_of: PATO:0000161 ! rate -intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045001 name: normal object quality def: "A quality of an object that has a value that is normal or average." [] is_a: PATO:0001241 ! physical object quality -intersection_of: PATO:0001241 ! physical object quality -intersection_of: has_relative_magnitude PATO:0000461 ! normal relationship: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-21T14:11:01Z @@ -20461,8 +20023,6 @@ def: "An acidity which is relatively normal." [] subset: value_slim is_a: PATO:0001842 ! acidity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001842 ! acidity -intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045003 @@ -20471,8 +20031,6 @@ def: "A adhesivity which is relatively normal or average." [] subset: value_slim is_a: PATO:0002331 ! adhesive is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002331 ! adhesive -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20483,8 +20041,6 @@ def: "An affinity which is relatively normal or average." [] subset: value_slim is_a: PATO:0002070 ! affinity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002070 ! affinity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20495,8 +20051,6 @@ def: "An age which is relatively normal or average." [] subset: value_slim is_a: PATO:0000011 ! age is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000011 ! age -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20508,8 +20062,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002073 ! avidity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002073 ! avidity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20520,8 +20072,6 @@ def: "A behavioural quality of a process inhering in a bearer by virtue of the b subset: value_slim is_a: PATO:0001707 ! behavioural active is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001707 ! behavioural active -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20532,8 +20082,6 @@ def: "A cellular motility which is normal or average." [] subset: value_slim is_a: PATO:0001488 ! cellular motility is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001488 ! cellular motility -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20545,8 +20093,6 @@ subset: cell_quality subset: value_slim is_a: PATO:0000404 ! coiled is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000404 ! coiled -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20558,8 +20104,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0001159 ! concentrated is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001159 ! concentrated -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20571,8 +20115,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001690 ! contractile is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001690 ! contractile -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20584,8 +20126,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000769 ! coordinated is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000769 ! coordinated -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20596,8 +20136,6 @@ def: "A curvature which is relatively normal or average." [] subset: value_slim is_a: PATO:0000406 ! curved is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000406 ! curved -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20609,8 +20147,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0000040 ! distance is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000040 ! distance -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20621,8 +20157,6 @@ def: "An efficiency which is relatively normal or average." [] subset: value_slim is_a: PATO:0001678 ! efficient is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001678 ! efficient -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20633,8 +20167,6 @@ def: "An elasticity which is relatively normal or average." [] subset: value_slim is_a: PATO:0001171 ! elastic is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001171 ! elastic -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20646,8 +20178,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000273 ! fecundity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000273 ! fecundity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20659,8 +20189,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000888 ! female fertile is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000888 ! female fertile -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20672,8 +20200,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001720 ! female receptivity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001720 ! female receptivity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20685,8 +20211,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000955 ! fertile is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000955 ! fertile -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20698,8 +20222,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001544 ! flexible is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001544 ! flexible -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20710,8 +20232,6 @@ def: "A fluid flow which is relatively normal or average." [] subset: value_slim is_a: PATO:0002243 ! fluid flow rate is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002243 ! fluid flow rate -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20722,8 +20242,6 @@ def: "A fluorescence which is relatively normal or average." [] subset: value_slim is_a: PATO:0001290 ! fluorescent is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001290 ! fluorescent -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20734,8 +20252,6 @@ def: "A force which is relatively normal or average." [] subset: value_slim is_a: PATO:0001035 ! force is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001035 ! force -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20747,8 +20263,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001362 ! fragile is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001362 ! fragile -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20758,8 +20272,6 @@ name: normal life span def: "A life span which is relatively normal or average." [] is_a: PATO:0000050 ! life span is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000050 ! life span -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20771,8 +20283,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001685 ! magnetic is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001685 ! magnetic -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20784,8 +20294,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000891 ! male fertile is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000891 ! male fertile -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20797,8 +20305,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0001721 ! male receptivity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001721 ! male receptivity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20809,8 +20315,6 @@ def: "A mass which is relatively normal or average." [] subset: value_slim is_a: PATO:0000125 ! mass is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000125 ! mass -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20821,8 +20325,6 @@ def: "A density which is relatively normal or average." [] subset: value_slim is_a: PATO:0001164 ! dense is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001164 ! dense -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20833,8 +20335,6 @@ def: "A mobility which is relatively normal or average." [] subset: value_slim is_a: PATO:0000299 ! mobile is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000299 ! mobile -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20845,8 +20345,6 @@ def: "An odor quality of having relatively normal or average odor." [] subset: value_slim is_a: PATO:0001331 ! odorous is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001331 ! odorous -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20858,8 +20356,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0002027 ! osmolality is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002027 ! osmolality -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20871,8 +20367,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0001655 ! osmolarity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001655 ! osmolarity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20884,8 +20378,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000982 ! permeable is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000982 ! permeable -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20896,8 +20388,6 @@ def: "A quality inhering in a bearer by virtue of the bearer's being phosphoryla subset: value_slim is_a: PATO:0002220 ! phosphorylated is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002220 ! phosphorylated -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20910,8 +20400,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0000547 ! photosensitive is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000547 ! photosensitive -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20923,8 +20411,6 @@ subset: mpath_slim subset: value_slim is_a: PATO:0002248 ! pigmented is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002248 ! pigmented -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20935,8 +20421,6 @@ def: "A position which is relatively normal or average" [] subset: value_slim is_a: PATO:0000140 ! position is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000140 ! position -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20948,8 +20432,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0002326 ! angle is_a: PATO:0045040 ! normal position -intersection_of: PATO:0002326 ! angle -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20960,8 +20442,6 @@ def: "A distribution which is relatively normal or average" [] subset: value_slim is_a: PATO:0001566 ! distributed is_a: PATO:0045040 ! normal position -intersection_of: PATO:0001566 ! distributed -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20972,8 +20452,6 @@ def: "An elevation which is relatively normal or average" [] subset: value_slim is_a: PATO:0001687 ! elevation is_a: PATO:0045040 ! normal position -intersection_of: PATO:0001687 ! elevation -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20984,8 +20462,6 @@ def: "A pressure which is relatively normal or average" [] subset: value_slim is_a: PATO:0001025 ! pressure is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001025 ! pressure -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20996,8 +20472,6 @@ def: "A radioactivity which is relatively normal or average" [] subset: value_slim is_a: PATO:0001741 ! radioactive is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001741 ! radioactive -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21009,8 +20483,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002136 ! radiopacity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002136 ! radiopacity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21023,8 +20495,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0001178 ! resistant to is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001178 ! resistant to -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21036,8 +20506,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001806 ! sensitivity to irradiation is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001806 ! sensitivity to irradiation -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21050,8 +20518,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0000516 ! sensitive toward is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000516 ! sensitive toward -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21062,8 +20528,6 @@ def: "A size quality which is relatively normal or average" [] subset: value_slim is_a: PATO:0000117 ! size is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000117 ! size -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21074,8 +20538,6 @@ def: "An area which is relatively normal or average" [] subset: value_slim is_a: PATO:0001323 ! area is_a: PATO:0045050 ! normal size -intersection_of: PATO:0001323 ! area -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21086,8 +20548,6 @@ def: "A depth quality which is relatively normal or average" [] subset: value_slim is_a: PATO:0001595 ! depth is_a: PATO:0045050 ! normal size -intersection_of: PATO:0001595 ! depth -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21098,8 +20558,6 @@ def: "A height which is relatively normal or average" [] subset: value_slim is_a: PATO:0000119 ! height is_a: PATO:0045050 ! normal size -intersection_of: PATO:0000119 ! height -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21110,8 +20568,6 @@ def: "A length quality which is relatively normal or average" [] subset: value_slim is_a: PATO:0000122 ! length is_a: PATO:0045050 ! normal size -intersection_of: PATO:0000122 ! length -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21122,8 +20578,6 @@ def: "A diameter which is relatively normal or average" [] subset: value_slim is_a: PATO:0001334 ! diameter is_a: PATO:0045054 ! normal length -intersection_of: PATO:0001334 ! diameter -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21134,8 +20588,6 @@ def: "An anterior-posterior diameter which is relatively normal or average" [] subset: value_slim is_a: PATO:0002041 ! anterior-posterior diameter is_a: PATO:0045055 ! normal diameter -intersection_of: PATO:0002041 ! anterior-posterior diameter -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21146,8 +20598,6 @@ def: "A perimeter which is relatively normal or average" [] subset: value_slim is_a: PATO:0001711 ! perimeter is_a: PATO:0045054 ! normal length -intersection_of: PATO:0001711 ! perimeter -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21158,8 +20608,6 @@ def: "A circumference which is relatively normal or average" [] subset: value_slim is_a: PATO:0001648 ! circumference is_a: PATO:0045057 ! normal perimeter -intersection_of: PATO:0001648 ! circumference -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21170,8 +20618,6 @@ def: "A thickness which is relatively normal or average" [] subset: value_slim is_a: PATO:0000915 ! thickness is_a: PATO:0045050 ! normal size -intersection_of: PATO:0000915 ! thickness -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21183,8 +20629,6 @@ subset: mpath_slim subset: value_slim is_a: PATO:0000918 ! volume is_a: PATO:0045050 ! normal size -intersection_of: PATO:0000918 ! volume -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21195,8 +20639,6 @@ def: "A width which is relatively normal or average" [] subset: value_slim is_a: PATO:0000921 ! width is_a: PATO:0045050 ! normal size -intersection_of: PATO:0000921 ! width -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21209,8 +20651,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0001537 ! soluble in is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001537 ! soluble in -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21221,8 +20661,6 @@ def: "A speed which is relatively normal or average" [] subset: value_slim is_a: PATO:0000008 ! speed is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000008 ! speed -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21233,8 +20671,6 @@ def: "A strength which is relatively normal or average" [] subset: value_slim is_a: PATO:0001230 ! strength is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001230 ! strength -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21246,8 +20682,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001815 ! fatigability is_a: PATO:0045064 ! normal strength -intersection_of: PATO:0001815 ! fatigability -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21260,8 +20694,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0001152 ! susceptible toward is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001152 ! susceptible toward -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21272,8 +20704,6 @@ def: "A temperature which is relatively normal or average" [] subset: value_slim is_a: PATO:0000146 ! temperature is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000146 ! temperature -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21284,8 +20714,6 @@ def: "A tendency which is relatively normal or average" [] subset: value_slim is_a: PATO:0002360 ! tendency is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002360 ! tendency -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21298,8 +20726,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0000152 ! threshold is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000152 ! threshold -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21311,8 +20737,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0000515 ! tolerant to is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000515 ! tolerant to -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21324,8 +20748,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001439 ! tonicity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001439 ! tonicity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21337,8 +20759,6 @@ subset: cell_quality subset: value_slim is_a: PATO:0001620 ! turgor is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001620 ! turgor -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21347,8 +20767,6 @@ id: PATO:0045073 name: normal process quality def: "A quality of aprocess that has a value that is normal or average." [] is_a: PATO:0001236 ! process quality -intersection_of: PATO:0001236 ! process quality -intersection_of: has_relative_magnitude PATO:0000461 ! normal relationship: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-21T14:11:01Z @@ -21359,10 +20777,7 @@ name: normal variability def: "A variability which is relatively normal or average" [] subset: value_slim is_a: PATO:0001227 ! variant -is_a: PATO:0045001 ! normal object quality -is_a: PATO:0045073 ! normal process quality -intersection_of: PATO:0001227 ! variant -intersection_of: has_relative_magnitude PATO:0000461 ! normal +relationship: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21372,10 +20787,7 @@ name: normal variability of color def: "A variability which is relatively normal or average" [] subset: value_slim is_a: PATO:0001615 ! variant color -is_a: PATO:0045001 ! normal object quality -is_a: PATO:0045073 ! normal process quality -intersection_of: PATO:0001615 ! variant color -intersection_of: has_relative_magnitude PATO:0000461 ! normal +relationship: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21385,10 +20797,7 @@ name: normal variability of rate def: "A variability of rate which is relatively normal or average" [] subset: value_slim is_a: PATO:0001586 ! variability of rate -is_a: PATO:0045001 ! normal object quality -is_a: PATO:0045073 ! normal process quality -intersection_of: PATO:0001586 ! variability of rate -intersection_of: has_relative_magnitude PATO:0000461 ! normal +relationship: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21398,10 +20807,7 @@ name: normal variability of size def: "A variability of size which is relatively normal or average" [] subset: value_slim is_a: PATO:0001956 ! variability of size -is_a: PATO:0045001 ! normal object quality -is_a: PATO:0045073 ! normal process quality -intersection_of: PATO:0001956 ! variability of size -intersection_of: has_relative_magnitude PATO:0000461 ! normal +relationship: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21411,10 +20817,7 @@ name: normal variability of temperature def: "A variability of temperature which is relatively normal or average" [] subset: value_slim is_a: PATO:0001314 ! variant temperature -is_a: PATO:0045001 ! normal object quality -is_a: PATO:0045073 ! normal process quality -intersection_of: PATO:0001314 ! variant temperature -intersection_of: has_relative_magnitude PATO:0000461 ! normal +relationship: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21425,8 +20828,6 @@ def: "A velocity which is relatively normal or average" [] subset: value_slim is_a: PATO:0002242 ! velocity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002242 ! velocity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21437,8 +20838,6 @@ def: "A virulence which is relatively normal or average" [] subset: value_slim is_a: PATO:0002146 ! virulence is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002146 ! virulence -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21449,8 +20848,6 @@ def: "A viscosity which is relatively normal or average" [] subset: value_slim is_a: PATO:0000998 ! viscous is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000998 ! viscous -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21461,8 +20858,6 @@ def: "A waxiness which is relatively normal or average" [] subset: value_slim is_a: PATO:0002381 ! waxiness is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002381 ! waxiness -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21473,8 +20868,6 @@ def: "A wetness which is relatively normal or average" [] subset: value_slim is_a: PATO:0001823 ! wet is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001823 ! wet -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21485,8 +20878,6 @@ def: "A duration quality of a process which is relatively normal." [] subset: value_slim is_a: PATO:0001309 ! duration is_a: PATO:0045073 ! normal process quality -intersection_of: PATO:0001309 ! duration -intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045085 @@ -21495,8 +20886,6 @@ def: "A duration quality of temperature quality of a process which is relatively subset: value_slim is_a: PATO:0001310 ! duration of temperature is_a: PATO:0045084 ! normal duration -intersection_of: PATO:0001310 ! duration of temperature -intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045086 @@ -21505,8 +20894,6 @@ def: "An occurrence which is relatively normal." [] subset: value_slim is_a: PATO:0000057 ! occurrence is_a: PATO:0045073 ! normal process quality -intersection_of: PATO:0000057 ! occurrence -intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045087 @@ -21516,8 +20903,6 @@ subset: mpath_slim subset: value_slim is_a: PATO:0000044 ! frequency is_a: PATO:0045000 ! normal rate -intersection_of: PATO:0000044 ! frequency -intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045088 @@ -21527,8 +20912,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0001457 ! sensitivity of a process is_a: PATO:0045073 ! normal process quality -intersection_of: PATO:0001457 ! sensitivity of a process -intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045089 @@ -21538,8 +20921,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001459 ! aerobic (for occurrence) is_a: PATO:0045088 ! normal sensitivity of a process -intersection_of: PATO:0001459 ! aerobic (for occurrence) -intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045090 @@ -21556,7 +20937,7 @@ name: north def: "North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west." [Wikipedia:http\://en.wikipedia.org/wiki/North] subset: value_slim is_a: PATO:0045090 ! cardinal direction -relationship: is_opposite_of PATO:0045093 ! south +property_value: RO:0002604 PATO:0045093 created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21566,7 +20947,7 @@ name: east def: "East is one of the four cardinal directions or points of the compass. It is the opposite direction from west." [Wikipedia:http\://en.wikipedia.org/wiki/East] subset: value_slim is_a: PATO:0045090 ! cardinal direction -relationship: is_opposite_of PATO:0045094 ! west +property_value: RO:0002604 PATO:0045094 created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21576,7 +20957,7 @@ name: south def: "South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west." [Wikipedia:http\://en.wikipedia.org/wiki/South] subset: value_slim is_a: PATO:0045090 ! cardinal direction -relationship: is_opposite_of PATO:0045091 ! north +property_value: RO:0002604 PATO:0045091 created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21586,7 +20967,7 @@ name: west def: "West is one of the four cardinal directions or points of the compass. It is the opposite direction from east." [Wikipedia:http\://en.wikipedia.org/wiki/West] subset: value_slim is_a: PATO:0045090 ! cardinal direction -relationship: is_opposite_of PATO:0045092 ! east +property_value: RO:0002604 PATO:0045092 created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21608,8 +20989,6 @@ name: decreased spatial extent of a process def: "A spatial distribution of a process in which the process occupies a smaller length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type." [orcid:0000-0003-4148-4606] is_a: PATO:0002302 ! decreased process quality is_a: PATO:0010005 ! spatial distribution of a process -intersection_of: PATO:0010005 ! spatial distribution of a process -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal created_by: midori creation_date: 2019-07-29T14:22:24Z @@ -21619,8 +20998,6 @@ name: increased spatial extent of a process def: "A spatial distribution of a process in which the process occupies a greater length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type." [https://orcid.org/0000-0003-4148-4606] is_a: PATO:0002304 ! increased process quality is_a: PATO:0010005 ! spatial distribution of a process -intersection_of: PATO:0010005 ! spatial distribution of a process -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal created_by: midori creation_date: 2019-07-29T14:23:31Z @@ -21711,10 +21088,22 @@ is_a: has_ratio_quality ! has_ratio_quality [Typedef] id: has_part +name: has part name: has_part +def: "a core relation that holds between a whole and its part" [] def: "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2." [PATOC:CJM] comment: We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. xref: BFO:0000051 +property_value: IAO:0000111 "has part" xsd:string +property_value: IAO:0000112 "my body has part my brain (continuant parthood, two material entities)" xsd:string +property_value: IAO:0000112 "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" xsd:string +property_value: IAO:0000112 "this year has part this day (occurrent parthood)" xsd:string +property_value: IAO:0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." xsd:string +property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string +property_value: IAO:0000118 "has_part" xsd:string +property_value: RO:0001900 RO:0001901 +is_transitive: true [Typedef] id: has_ratio_quality @@ -21756,13 +21145,6 @@ id: is_measurement_of name: is_measurement_of namespace: pato.ontology -[Typedef] -id: is_opposite_of -name: is opposite of -xref: RO:0002604 -is_metadata_tag: true -is_class_level: true - [Typedef] id: is_unit_of name: is_unit_of @@ -21770,9 +21152,22 @@ namespace: pato.ontology [Typedef] id: part_of +name: part of name: part_of +def: "a core relation that holds between a part and its whole" [] xref: BFO:0000050 +property_value: IAO:0000111 "is part of" xsd:string +property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string +property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string +property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string +property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string +property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string +property_value: IAO:0000118 "part_of" xsd:string +property_value: RO:0001900 RO:0001901 +property_value: seeAlso http://www.obofoundry.org/ro/#OBO_REL:part_of xsd:string is_transitive: true +inverse_of: has_part ! has part [Typedef] id: realized_by diff --git a/pato.owl b/pato.owl index 97a8ab8e..3253ddda 100644 --- a/pato.owl +++ b/pato.owl @@ -11,7 +11,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + OBO-Edit 2.3.1 07:02:2018 10:27 quality @@ -32,11 +32,33 @@ + + + + + + + + + + + + - - definition - + + + + + + + + + + + + + @@ -48,23 +70,19 @@ - - term replaced by - + + + + + + + - - RO:0002604 - quality - is_opposite_of - true - true - is_opposite_of - is opposite of - + @@ -178,17 +196,9 @@ - - - - - - - - consider - + @@ -204,79 +214,45 @@ - - - - - - - - - - - - - - has_alternative_id - + - - has_broad_synonym - + - - database_cross_reference - + - - has_exact_synonym - + - - has_narrow_synonym - - - - - - - - has_obo_format_version - + - - has_obo_namespace - + - - has_related_synonym - + @@ -288,53 +264,13 @@ - - in_subset - - - - - - - - - - - - - - - - - - - + - - shorthand - - - - - - - - - - - - - - - - - - - + @@ -352,12 +288,27 @@ + + is part of + my brain is part of my body (continuant parthood, two material entities) + my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity) + this day is part of this year (occurrent parthood) + a core relation that holds between a part and its whole + Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other. + Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) + +A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'. + part_of + BFO:0000050 quality part_of part_of + part of part_of + http://www.obofoundry.org/ro/#OBO_REL:part_of @@ -365,12 +316,26 @@ + + has part + my body has part my brain (continuant parthood, two material entities) + my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity) + this year has part this day (occurrent parthood) Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2. + a core relation that holds between a whole and its part + Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part. + Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) + +A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'. + has_part + BFO:0000051 quality has_part has_part We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. + has part has_part @@ -704,7 +669,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000000 obsolete pato @@ -716,7 +680,6 @@ Association is weaker than correlation or proportionality. These relations may b - A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities PATO:0000072 quality @@ -735,7 +698,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000002 obsolete value @@ -747,7 +709,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000003 obsolete assay @@ -781,7 +742,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000005 obsolete absolute activity @@ -793,7 +753,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000006 obsolete process @@ -805,7 +764,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000007 obsolete relative activity @@ -838,7 +796,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000009 obsolete absolute speed @@ -850,7 +807,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000010 obsolete relative speed @@ -882,7 +838,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000012 obsolete absolute age @@ -894,7 +849,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000013 obsolete relative age @@ -1029,7 +983,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -1062,7 +1015,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000022 obsolete gametophytic compatability @@ -1074,7 +1026,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000023 obsolete relative compatability @@ -1086,7 +1037,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000024 obsolete sporophytic compatability @@ -1124,7 +1074,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000026 obsolete carbohydrate composition @@ -1136,7 +1085,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000027 obsolete electrolyte composition @@ -1148,7 +1096,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000028 obsolete macromolecular composition @@ -1160,7 +1107,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000029 obsolete protein composition @@ -1172,7 +1118,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000030 obsolete enzyme composition @@ -1184,7 +1129,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000031 obsolete metabolite composition @@ -1196,7 +1140,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000032 obsolete secondary product composition @@ -1230,7 +1173,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000034 obsolete protein concentration @@ -1242,7 +1184,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000035 obsolete carbohydrate concentration @@ -1254,7 +1195,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000036 obsolete water content @@ -1287,7 +1227,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000038 obsolete gel consistency @@ -1340,7 +1279,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000041 obsolete absolutedistance @@ -1352,7 +1290,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000042 obsolete relative distance @@ -1404,7 +1341,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000045 obsolete absolute frequency @@ -1416,7 +1352,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000046 obsolete relative frequency @@ -1549,7 +1484,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -1560,7 +1494,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000054 obsolete absolute number @@ -1572,7 +1505,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000055 obsolete relative number @@ -1648,7 +1580,6 @@ Association is weaker than correlation or proportionality. These relations may b - A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a parent. parental type quality @@ -1693,7 +1624,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000061 obsolete relative pattern @@ -1724,7 +1654,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000063 obsolete percentage @@ -1736,7 +1665,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000064 obsolete absolute percentage @@ -1748,7 +1676,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000065 obsolete relative percentage @@ -1780,7 +1707,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000067 obsolete relative pilosity @@ -1858,7 +1784,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -1869,7 +1794,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -1880,7 +1804,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000073 obsolete relative_quality @@ -1892,7 +1815,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000074 obsolete shattering @@ -1904,7 +1826,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000075 obsolete threshability @@ -1916,7 +1837,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000076 obsolete regulation @@ -1978,7 +1898,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000079 obsolete absolute rhythym @@ -2009,7 +1928,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -2058,7 +1976,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000084 obsolete relative rhythym @@ -2092,7 +2009,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000086 obsolete absolute sensitivity @@ -2104,7 +2020,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000087 obsolete disease sensitivity @@ -2116,7 +2031,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000088 obsolete absolute disease sensitivity @@ -2128,7 +2042,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000089 obsolete relative disease sensitivity @@ -2140,7 +2053,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000090 obsolete relative sensitivity @@ -2152,7 +2064,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000091 obsolete stress sensitivity @@ -2164,7 +2075,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000092 obsolete abiotic stress sensitivity @@ -2176,7 +2086,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000093 obsolete chemical sensitivity @@ -2188,7 +2097,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000094 obsolete drug sensitivity @@ -2200,7 +2108,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000095 obsolete absolute drug sensitivity @@ -2212,7 +2119,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000096 obsolete relative drug sensitivity @@ -2224,7 +2130,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000097 obsolete herbicide sensitivity @@ -2236,7 +2141,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000098 obsolete insecticide sensitivity @@ -2248,7 +2152,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000099 obsolete plant growth hormone sensitivity @@ -2260,7 +2163,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000100 obsolete soil composition sensitivity @@ -2272,7 +2174,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000101 obsolete soil nutrient sensitivity @@ -2284,7 +2185,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000102 obsolete macronutrient sensitivity @@ -2296,7 +2196,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000103 obsolete micronutrient sensitivity @@ -2308,7 +2207,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000104 obsolete osmotic response sensitivity @@ -2320,7 +2218,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000105 obsolete p h sensitivity @@ -2332,7 +2229,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000106 obsolete acid sensitivity @@ -2344,7 +2240,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000107 obsolete alkali sensitivity @@ -2356,7 +2251,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000108 obsolete salt sensitivity @@ -2368,7 +2262,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000109 obsolete water sensitivity @@ -2380,7 +2273,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000110 obsolete drought sensitivity @@ -2392,7 +2284,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000111 obsolete flooding sensitivity @@ -2404,7 +2295,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000112 obsolete humidity sensitivity @@ -2416,7 +2306,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000113 obsolete radiation sensitivity @@ -2428,7 +2317,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000114 obsolete temperature sensitivity @@ -2440,7 +2328,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000115 obsolete absolute temperature sensitivity @@ -2452,7 +2339,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000116 obsolete relative temperature sensitivity @@ -2484,7 +2370,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000118 obsolete absolute size @@ -2516,7 +2401,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000120 obsolete absolute height @@ -2528,7 +2412,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000121 obsolete relative height @@ -2561,7 +2444,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000123 obsolete absolute length @@ -2573,7 +2455,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000124 obsolete relative length @@ -2606,7 +2487,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000126 obsolete absolute mass @@ -2618,7 +2498,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000127 obsolete relative mass @@ -2650,7 +2529,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000129 obsolete absolute weight @@ -2662,7 +2540,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000130 obsolete relative weight @@ -2674,7 +2551,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000131 obsolete relative size @@ -2686,7 +2562,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -2723,7 +2598,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000134 obsolete absolute_angle @@ -2735,7 +2609,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000135 obsolete relative_angle @@ -2767,7 +2640,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -2778,7 +2650,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000138 obsolete absolute orientation @@ -2790,7 +2661,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000139 obsolete relative orientation @@ -2854,7 +2724,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000142 obsolete substance @@ -2866,7 +2735,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000143 obsolete addictive substance @@ -2878,7 +2746,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000144 This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a solid; 'PATO:0001546' @@ -2891,7 +2758,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000145 This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a liquid; PATO:0001548 ' @@ -2924,7 +2790,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000147 obsolete absolute temperature @@ -2936,7 +2801,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000148 obsolete body temperature @@ -2948,7 +2812,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000149 obsolete relative temperature @@ -2979,7 +2842,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000151 obsolete relative texture @@ -3012,7 +2874,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000153 obsolete absolute threshold @@ -3024,7 +2885,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000154 obsolete pain threshold @@ -3036,7 +2896,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000155 obsolete relative threshold @@ -3048,7 +2907,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -3059,7 +2917,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000157 obsolete absolute temporal @@ -3071,7 +2928,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -3082,7 +2938,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000159 obsolete absolute incidence @@ -3094,7 +2949,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000160 obsolete relative incidence @@ -3126,7 +2980,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000162 obsolete absolute rate @@ -3138,7 +2991,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000163 obsolete relative rate @@ -3150,7 +3002,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000164 obsolete relative temporal @@ -3182,7 +3033,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000166 obsolete absolute time @@ -3194,7 +3044,6 @@ Association is weaker than correlation or proportionality. These relations may b - A limited, often assigned period of activity. quality PATO:0000167 @@ -3214,7 +3063,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000168 obsolete relative time @@ -3246,7 +3094,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000170 obsolete yield @@ -3258,7 +3105,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000171 obsolete absolute yield @@ -3270,7 +3116,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000172 obsolete relative yield @@ -3282,7 +3127,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000173 obsolete function @@ -3294,7 +3138,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000174 obsolete autonomic function @@ -3306,7 +3149,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000175 obsolete behavioral function @@ -3318,7 +3160,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000176 obsolete metabolic function @@ -3330,7 +3171,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000177 obsolete physiological function @@ -3342,7 +3182,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000178 obsolete relative function @@ -3354,7 +3193,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000179 obsolete body position @@ -3366,7 +3204,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000180 obsolete body tone @@ -3378,7 +3215,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000181 obsolete piloerection @@ -3390,7 +3226,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000182 obsolete abdominal tone @@ -3402,7 +3237,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000183 obsolete limb tone @@ -3414,7 +3248,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000184 obsolete arousal @@ -3466,7 +3299,6 @@ Association is weaker than correlation or proportionality. These relations may b - A relational quality of occurrent inhering in a bearer by virtue of the bearer's ability to consume a resource. quality propensity to consume @@ -3531,7 +3363,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000190 obsolete gait @@ -3543,7 +3374,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000191 obsolete learning_and memory @@ -3555,7 +3385,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000192 obsolete locomotor_activity @@ -3567,7 +3396,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000193 obsolete mating @@ -3579,7 +3407,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000194 obsolete spontaneous_activity @@ -3591,7 +3418,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000195 obsolete startle response @@ -3603,7 +3429,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000196 obsolete vocalization @@ -3615,7 +3440,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000197 obsolete transfer_arousal @@ -3627,7 +3451,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000198 obsolete absolute consumption @@ -3639,7 +3462,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000199 obsolete relative consumption @@ -3651,7 +3473,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000200 obsolete learning @@ -3663,7 +3484,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000201 obsolete memory @@ -3675,7 +3495,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000202 obsolete long term memory @@ -3687,7 +3506,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000203 obsolete short term memory @@ -3699,7 +3517,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000204 obsolete absolute locomotor_activity @@ -3711,7 +3528,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000205 obsolete relative locomotor_activity @@ -3723,7 +3539,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000206 obsolete enzyme function @@ -3735,7 +3550,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000207 obsolete circulatory function @@ -3747,7 +3561,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000208 obsolete defensive function @@ -3759,7 +3572,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000209 obsolete digestive function @@ -3771,7 +3583,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000210 obsolete excretory function @@ -3783,7 +3594,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000211 obsolete muscle function @@ -3795,7 +3605,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000212 obsolete neural function @@ -3807,7 +3616,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000213 obsolete neurobehavioral function @@ -3819,7 +3627,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000214 obsolete reproductive function @@ -3831,7 +3638,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000215 obsolete respiratory function @@ -3843,7 +3649,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000216 obsolete heart rate @@ -3855,7 +3660,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000217 obsolete immune function @@ -3867,7 +3671,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000218 obsolete repair function @@ -3879,7 +3682,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000219 obsolete healing @@ -3891,7 +3693,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000220 obsolete regeneration @@ -3903,7 +3704,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000221 obsolete urination @@ -3915,7 +3715,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000222 obsolete muscle elevation @@ -3927,7 +3726,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000223 obsolete muscle strength @@ -3939,7 +3737,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000224 obsolete motor function @@ -3951,7 +3748,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000225 obsolete sensory function @@ -3963,7 +3759,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000226 obsolete tactile response @@ -3975,7 +3770,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000227 obsolete motor performance @@ -3987,7 +3781,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000228 obsolete auditory @@ -3999,7 +3792,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000229 obsolete olfactory @@ -4011,7 +3803,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000230 obsolete proprioreception @@ -4023,7 +3814,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000231 obsolete reflex @@ -4035,7 +3825,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000232 obsolete taste @@ -4047,7 +3836,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000233 obsolete touch @@ -4059,7 +3847,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000234 obsolete visual @@ -4071,7 +3858,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000235 obsolete odor_acuity @@ -4083,7 +3869,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000236 obsolete odor type @@ -4095,7 +3880,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000237 obsolete absolute odor_acuity @@ -4107,7 +3891,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000238 obsolete relative odor_acuity @@ -4119,7 +3902,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000239 obsolete blinking reflex @@ -4131,7 +3913,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000240 obsolete contact righting reflex @@ -4143,7 +3924,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000241 obsolete corneal reflex @@ -4155,7 +3935,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000242 obsolete flinch reflex @@ -4167,7 +3946,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000243 obsolete lordosis reflex @@ -4179,7 +3957,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000244 obsolete ocular reflex @@ -4191,7 +3968,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000245 obsolete pinna reflex @@ -4203,7 +3979,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000246 obsolete postural reflex @@ -4215,7 +3990,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000247 obsolete proboscis extension reflex @@ -4227,7 +4001,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000248 obsolete pupillary reflex @@ -4239,7 +4012,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000249 obsolete righting reflex @@ -4251,7 +4023,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000250 obsolete spinal reflex @@ -4263,7 +4034,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000251 obsolete startle reflex @@ -4275,7 +4045,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000252 obsolete suckling reflex @@ -4287,7 +4056,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000253 obsolete swallowing reflex @@ -4299,7 +4067,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000254 obsolete vibrissae reflex @@ -4311,7 +4078,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000255 obsolete taste_acuity @@ -4323,7 +4089,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000256 obsolete taste type @@ -4335,7 +4100,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000257 obsolete absolute taste_acuity @@ -4347,7 +4111,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000258 obsolete relative taste_acuity @@ -4359,7 +4122,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000259 obsolete visual_ability @@ -4371,7 +4133,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000260 obsolete visual_acuity @@ -4402,7 +4163,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000262 obsolete visual placing @@ -4414,7 +4174,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000263 obsolete visual threshold @@ -4426,7 +4185,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000264 obsolete absolute visual_ability @@ -4438,7 +4196,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000265 obsolete relative visual_ability @@ -4450,7 +4207,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000266 obsolete absolute visual_acuity @@ -4462,7 +4218,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000267 obsolete relative visual_acuity @@ -4474,7 +4229,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000268 obsolete absolute visual threshold @@ -4486,7 +4240,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000269 obsolete relative visual threshold @@ -4498,7 +4251,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000270 obsolete defecation @@ -4510,7 +4262,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000271 obsolete prepulse inhibition @@ -4522,7 +4273,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000272 obsolete relative neurobehavioral function @@ -4575,7 +4325,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000275 obsolete gestational period @@ -4628,7 +4377,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000278 obsolete hybrid fertility @@ -4660,7 +4408,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000280 obsolete backcross fertility @@ -4672,7 +4419,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000281 obsolete cytoplasmic sterility @@ -4684,7 +4430,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000282 obsolete f1 fertility @@ -4696,7 +4441,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000283 obsolete f2 fertility @@ -4708,7 +4452,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000284 obsolete germ line dependent fertility @@ -4720,7 +4463,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000285 obsolete soma dependent fertility @@ -4732,7 +4474,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000286 obsolete cytoplasmic male sterility @@ -4744,7 +4485,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000287 obsolete absolute litter size @@ -4756,7 +4496,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000288 obsolete relative litter size @@ -4768,7 +4507,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000289 obsolete respiratory rate @@ -4780,7 +4518,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000290 obsolete absolute respiratory rate @@ -4792,7 +4529,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000291 obsolete relative respiratory rate @@ -4804,7 +4540,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000292 obsolete mobility value @@ -4816,7 +4551,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000293 obsolete absolute activity value @@ -4828,7 +4562,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000294 obsolete process value @@ -4840,7 +4573,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000295 obsolete relative activity value @@ -4852,7 +4584,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000296 obsolete speed value @@ -4888,7 +4619,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000298 obsolete not arrested value @@ -4944,7 +4674,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000301 obsolete absolute speed value @@ -4956,7 +4685,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000302 obsolete relative speed value @@ -4968,17 +4696,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A speed which is relatively high. @@ -5002,17 +4719,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A speed which is relatively low. @@ -5036,7 +4742,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000305 obsolete age value @@ -5048,7 +4753,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000306 obsolete absolute age value @@ -5060,7 +4764,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000307 obsolete relative age value @@ -5112,7 +4815,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000310 obsolete color value @@ -5124,7 +4826,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000311 obsolete color hue value @@ -5136,7 +4837,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000312 obsolete color intensity value @@ -5148,7 +4848,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000313 obsolete color saturation value @@ -5160,7 +4859,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000314 obsolete flourescence value @@ -5172,7 +4870,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000315 obsolete color pattern value @@ -5184,7 +4881,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000316 obsolete relative color value @@ -5356,7 +5052,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000325 obsolete bright @@ -5368,7 +5063,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000326 obsolete dim @@ -5485,7 +5179,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -5515,7 +5208,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -5526,7 +5218,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality mottled (sensu Drosophila) PATO:0000335 @@ -5582,7 +5273,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000338 obsolete compatability value @@ -5594,7 +5284,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000339 obsolete gametophytic compatability value @@ -5606,7 +5295,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000340 obsolete relative compatability value @@ -5618,7 +5306,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000341 obsolete sporophytic compatability value @@ -5630,7 +5317,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000342 obsolete gametophyte compatible value @@ -5642,7 +5328,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000343 obsolete gametophyte incompatible value @@ -5699,7 +5384,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000346 obsolete sporophyte compatible value @@ -5711,7 +5395,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000347 obsolete sporophyte incompatible value @@ -5723,7 +5406,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000348 obsolete composition value @@ -5735,7 +5417,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000349 obsolete carbohydrate composition value @@ -5747,7 +5428,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000350 obsolete electrolyte composition value @@ -5759,7 +5439,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000351 obsolete macromolecular composition value @@ -5771,7 +5450,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000352 obsolete metabolite composition value @@ -5783,7 +5461,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000353 obsolete secondary product composition value @@ -5795,7 +5472,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000354 obsolete protein composition value @@ -5807,7 +5483,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000355 obsolete enzyme composition value @@ -5819,7 +5494,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000356 obsolete concentration value @@ -5831,7 +5505,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000357 obsolete protein concentration value @@ -5843,7 +5516,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000358 obsolete sugar concentration value @@ -5855,7 +5527,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000359 obsolete water content value @@ -5867,7 +5538,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000360 obsolete consistency value @@ -5879,7 +5549,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000361 obsolete gel consistency value @@ -5891,7 +5560,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000362 obsolete direction value @@ -5903,7 +5571,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000363 obsolete away @@ -5915,7 +5582,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000364 obsolete bi-directional @@ -5985,7 +5651,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000368 obsolete towards1 @@ -5997,7 +5662,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000369 obsolete unidirectional @@ -6029,7 +5693,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000371 obsolete distance value @@ -6041,7 +5704,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000372 obsolete absolute distance value @@ -6053,7 +5715,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000373 obsolete relative distance value @@ -6065,17 +5726,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A distance which is greater relative to the normal or average. @@ -6099,17 +5749,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A distance which is lesser relative to the normal or average. @@ -6133,7 +5772,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000376 obsolete flavor value @@ -6145,7 +5783,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000377 obsolete frequency value @@ -6157,7 +5794,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000378 obsolete absolute frequency value @@ -6169,7 +5805,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000379 obsolete relative frequency value @@ -6181,17 +5816,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A frequency which is relatively high. @@ -6216,17 +5840,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A frequency which is relatively low. @@ -6251,7 +5864,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000382 obsolete gender value @@ -6303,7 +5915,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000385 obsolete hardness value @@ -6315,17 +5926,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A hardness quality of being rigid and resistant to pressure. @@ -6352,17 +5952,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A hardness quality of giving little resistance to pressure. @@ -6386,7 +5975,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000388 obsolete intensity value @@ -6420,7 +6008,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000390 obsolete extreme @@ -6432,7 +6019,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000391 obsolete intense @@ -6444,7 +6030,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000392 obsolete limited @@ -6456,7 +6041,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000393 obsolete maximal @@ -6531,7 +6115,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000397 @@ -6544,7 +6127,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000398 obsolete vigorous @@ -6556,7 +6138,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000399 obsolete life span value @@ -6568,7 +6149,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000400 obsolete morphology value @@ -6580,7 +6160,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000401 obsolete shape value @@ -6731,7 +6310,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -6810,7 +6388,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -6885,7 +6462,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000416 obsolete count value @@ -6897,7 +6473,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000417 obsolete absolute number value @@ -6909,7 +6484,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000418 obsolete relative number value @@ -6921,7 +6495,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -6932,7 +6505,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -6943,7 +6515,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000421 obsolete nutritional value @@ -6997,7 +6568,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000424 obsolete occurence value @@ -7009,7 +6579,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000425 @@ -7022,7 +6591,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -7078,7 +6646,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -7089,7 +6656,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000430 obsolete unique @@ -7101,7 +6667,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000431 obsolete odor value @@ -7113,7 +6678,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000432 obsolete parental type value @@ -7125,7 +6689,6 @@ Association is weaker than correlation or proportionality. These relations may b - A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a father. quality PATO:0000433 @@ -7145,7 +6708,6 @@ Association is weaker than correlation or proportionality. These relations may b - A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a mother. quality PATO:0000434 @@ -7165,7 +6727,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000435 obsolete pattern value @@ -7177,7 +6738,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000436 obsolete concrete @@ -7189,7 +6749,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000437 obsolete sleep pattern value @@ -7223,7 +6782,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000439 obsolete perseverative @@ -7276,7 +6834,6 @@ Association is weaker than correlation or proportionality. These relations may b - A sleep pattern quality inhering in a bearer by virtue of the bearer's inability to sleep. quality PATO:0000442 @@ -7298,7 +6855,6 @@ Association is weaker than correlation or proportionality. These relations may b - A sleep pattern quality inhering in a bearer by virtue of the bearer's disrupted sleep during normal sleeping period; often accompanied by cataplexy, sleep paralysis. quality PATO:0000443 @@ -7314,7 +6870,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000444 obsolete percentage value @@ -7326,7 +6881,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000445 obsolete relative percentage value @@ -7338,7 +6892,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000446 obsolete absolute percentage value @@ -7350,7 +6903,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000447 obsolete decreased percentage @@ -7362,7 +6914,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000448 obsolete high percentage @@ -7374,7 +6925,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000449 obsolete increased percentage @@ -7386,7 +6936,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000450 obsolete low percentage @@ -7398,7 +6947,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000451 obsolete pilosity value @@ -7410,7 +6958,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000452 obsolete relative pilosity value @@ -7484,7 +7031,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000456 obsolete abstract @@ -7496,7 +7042,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000457 obsolete deviation(from_normal) value @@ -7508,7 +7053,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000458 obsolete presence value @@ -7520,7 +7064,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000459 obsolete relative quantity value @@ -7664,7 +7207,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000465 obsolete marked @@ -7676,7 +7218,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000466 obsolete none @@ -7710,7 +7251,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -7721,7 +7261,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000469 obsolete high @@ -7733,17 +7272,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An amount which is relatively high. @@ -7772,7 +7300,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000471 obsolete low @@ -7784,7 +7311,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000472 obsolete quality value @@ -7796,7 +7322,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000473 obsolete relative_quality value @@ -7808,7 +7333,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000474 obsolete shattering value @@ -7820,7 +7344,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000475 obsolete threshability value @@ -7832,7 +7355,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000476 obsolete bad value @@ -7844,7 +7366,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000477 obsolete good value @@ -7856,7 +7377,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000478 obsolete poor value @@ -7868,7 +7388,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000479 obsolete regulation value @@ -7880,7 +7399,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000480 obsolete positive regulation @@ -7892,7 +7410,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000481 obsolete negative regulation @@ -7904,7 +7421,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000482 obsolete response value @@ -7916,7 +7432,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000483 obsolete tactile hyperresponsive @@ -7928,7 +7443,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000484 obsolete tactile hyporesponsive @@ -7940,7 +7454,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000485 obsolete mild response @@ -7952,7 +7465,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000486 obsolete moderate response @@ -8011,7 +7523,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000489 obsolete vigorous response @@ -8023,7 +7534,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000490 obsolete rhythym value @@ -8035,7 +7545,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000491 obsolete sensitivity value @@ -8047,7 +7556,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000492 obsolete absolute rhythym value @@ -8059,7 +7567,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000493 obsolete amplitude value @@ -8071,7 +7578,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000494 obsolete period value @@ -8083,7 +7589,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000495 obsolete persistence value @@ -8095,7 +7600,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000496 obsolete phase value @@ -8107,7 +7611,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000497 obsolete relative rhythym value @@ -8119,17 +7622,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A duration quality of a process which is relatively high. @@ -8158,17 +7650,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A duration quality of a process which is relatively low. @@ -8313,7 +7794,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000506 obsolete absolute sensitivity value @@ -8325,7 +7805,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000507 obsolete disease sensitivity value @@ -8337,7 +7816,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000508 obsolete relative sensitivity value @@ -8349,7 +7827,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000509 obsolete stress sensitivity value @@ -8361,7 +7838,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000510 obsolete temperature sensitivity value @@ -8373,7 +7849,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000511 obsolete absolute disease sensitivity value @@ -8385,7 +7860,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000512 obsolete relative disease sensitivity value @@ -8421,7 +7895,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000514 obsolete intolerant value @@ -8479,7 +7952,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000517 obsolete abiotic stress sensitivity value @@ -8491,7 +7963,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000518 obsolete chemical sensitivity value @@ -8503,7 +7974,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000519 obsolete humidity sensitivity value @@ -8515,7 +7985,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000520 obsolete radiation sensitivity value @@ -8527,7 +7996,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000521 obsolete drug sensitivity value @@ -8539,7 +8007,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000522 obsolete herbicide sensitivity value @@ -8551,7 +8018,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000523 obsolete insecticide sensitivity value @@ -8563,7 +8029,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000524 obsolete plant growth hormone sensitivity value @@ -8575,7 +8040,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000525 obsolete soil composition sensitivity value @@ -8587,7 +8051,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000526 obsolete absolute drug sensitivity value @@ -8599,7 +8062,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000527 obsolete relative drug sensitivity value @@ -8611,7 +8073,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000528 obsolete drug insensitive @@ -8623,7 +8084,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000529 obsolete drug sensitive @@ -8635,7 +8095,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000530 obsolete soil nutrient sensitivity value @@ -8647,7 +8106,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000531 obsolete macronutrient sensitivity value @@ -8659,7 +8117,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000532 obsolete micronutrient sensitivity value @@ -8671,7 +8128,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000533 obsolete osmotic response sensitivity @@ -8683,7 +8139,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000534 obsolete p h sensitivity value @@ -8695,7 +8150,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000535 obsolete salt sensitivity value @@ -8707,7 +8161,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000536 obsolete water sensitivity value @@ -8719,7 +8172,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000537 obsolete acid sensitivity value @@ -8731,7 +8183,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000538 obsolete alkali sensitivity value @@ -8743,7 +8194,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000539 obsolete drought sensitivity value @@ -8755,7 +8205,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000540 obsolete flooding sensitivity value @@ -8767,7 +8216,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000541 obsolete photosensitivity value @@ -8779,7 +8227,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000542 obsolete absolute photosensitivity value @@ -8791,7 +8238,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000543 obsolete light intensivity sensitivity value @@ -8803,7 +8249,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000544 obsolete light_quality sensitivity value @@ -8815,7 +8260,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000545 obsolete relative photosensitivity value @@ -8871,7 +8315,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000548 obsolete blue light sensitivity value @@ -8883,7 +8326,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000549 obsolete far red light sensitivity value @@ -8895,7 +8337,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000550 obsolete red light sensitivity value @@ -8907,7 +8348,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000551 obsolete u v light sensitivity value @@ -8919,7 +8359,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000552 obsolete absolute temperature sensitivity value @@ -8931,7 +8370,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000553 obsolete relative temperature sensitivity value @@ -8943,7 +8381,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000554 obsolete cold sensitive @@ -8955,7 +8392,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000555 obsolete heat sensitive @@ -8967,7 +8403,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality thermoresistant PATO:0000556 @@ -8980,7 +8415,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000557 obsolete thermosensitive @@ -8992,7 +8426,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000558 obsolete size value @@ -9004,7 +8437,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000559 obsolete absolute size value @@ -9016,7 +8448,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000560 obsolete height value @@ -9028,7 +8459,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000561 obsolete length value @@ -9040,7 +8470,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000562 obsolete mass value @@ -9052,7 +8481,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000563 obsolete relative size value @@ -9064,7 +8492,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000564 obsolete thickness value @@ -9076,7 +8503,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000565 obsolete volume value @@ -9088,7 +8514,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality :breadth PATO:0000566 @@ -9101,7 +8526,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000567 obsolete absolute height value @@ -9113,7 +8537,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000568 obsolete relative height value @@ -9125,17 +8548,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A height which is relatively low. @@ -9158,17 +8570,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A height which is relatively high. @@ -9191,7 +8592,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000571 obsolete absolute length value @@ -9203,7 +8603,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000572 obsolete relative length value @@ -9215,17 +8614,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A length quality which is relatively large. @@ -9248,17 +8636,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A length quality which is relatively small. @@ -9283,7 +8660,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000575 obsolete absolute mass value @@ -9295,7 +8671,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000576 obsolete relative mass value @@ -9307,7 +8682,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000577 obsolete weight value @@ -9319,7 +8693,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -9330,7 +8703,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -9341,7 +8713,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000580 obsolete absolute weight value @@ -9353,7 +8724,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000581 obsolete relative weight value @@ -9365,17 +8735,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A weight which is relatively high. @@ -9399,17 +8758,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A weight which is relatively low. @@ -9478,17 +8826,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A size quality which is relatively high. @@ -9516,17 +8853,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A size quality which is relatively low. @@ -9573,7 +8899,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000589 obsolete absolute thickness value @@ -9585,7 +8910,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000590 obsolete relative thickness value @@ -9597,17 +8921,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A thickness which is relatively high. @@ -9634,17 +8947,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A thickness which is relatively low. @@ -9670,7 +8972,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000593 obsolete absolute volume value @@ -9682,7 +8983,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000594 obsolete relative volume value @@ -9694,17 +8994,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A volume which is relatively high. @@ -9729,17 +9018,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A volume which is relatively low. @@ -9764,7 +9042,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000597 obsolete absolute width value @@ -9776,7 +9053,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000598 obsolete relative width value @@ -9788,17 +9064,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A width which is relatively small. @@ -9821,17 +9086,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A width which is relatively large. @@ -9856,7 +9110,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000601 obsolete spatial value @@ -9868,7 +9121,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000602 obsolete angle value @@ -9880,7 +9132,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000603 obsolete closure value @@ -9892,7 +9143,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000604 obsolete orientation value @@ -9904,7 +9154,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality location position @@ -9918,7 +9167,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000606 obsolete absolute angle value @@ -9930,7 +9178,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000607 obsolete relative angle value @@ -10003,7 +9250,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000611 obsolete absolute orientation value @@ -10015,7 +9261,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000612 obsolete relative orientation value @@ -10191,7 +9436,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -10516,7 +9760,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000637 obsolete structure value @@ -10600,7 +9843,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000641 obsolete deposition defective @@ -10769,7 +10011,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -10780,7 +10021,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -10813,7 +10053,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000652 obsolete substance value @@ -10825,7 +10064,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000653 obsolete addictive substance value @@ -10837,7 +10075,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000654 obsolete alcochol value @@ -10849,7 +10086,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000655 obsolete amphetamine value @@ -10861,7 +10097,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000656 obsolete time_quantity @@ -10873,7 +10108,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000657 obsolete length_quantity @@ -10885,7 +10119,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000658 obsolete metamphetamine value @@ -10897,7 +10130,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000659 obsolete temparature_quantity @@ -10909,7 +10141,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000660 obsolete angle_quantity @@ -10921,7 +10152,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000661 obsolete solid substance value @@ -10933,7 +10163,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000662 obsolete volume_quantity @@ -10945,7 +10174,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000663 obsolete occurrent @@ -10957,7 +10185,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000664 obsolete substance_quantity @@ -10990,7 +10217,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000666 obsolete energy_quantity @@ -11002,7 +10228,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000667 obsolete liquid substance value @@ -11014,7 +10239,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000668 obsolete mass_quantity @@ -11026,7 +10250,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000669 obsolete concentration_unit @@ -11038,7 +10261,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000670 obsolete saccharin versus water value @@ -11050,7 +10272,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000671 obsolete water value @@ -11062,7 +10283,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000672 obsolete unit @@ -11074,7 +10294,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000673 obsolete temperature value @@ -11086,7 +10305,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000674 obsolete absolute temperature value @@ -11098,7 +10316,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000675 obsolete body temperature value @@ -11110,7 +10327,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000676 obsolete relative temperature value @@ -11122,7 +10338,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -11133,7 +10348,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -11144,7 +10358,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000679 obsolete temporal value @@ -11156,7 +10369,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000680 obsolete absolute temporal value @@ -11168,7 +10380,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000681 obsolete incidence value @@ -11180,7 +10391,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000682 obsolete rate value @@ -11192,7 +10402,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000683 obsolete relative temporal value @@ -11204,7 +10413,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000684 obsolete absolute incidence value @@ -11216,7 +10424,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000685 obsolete relative incidence value @@ -11228,7 +10435,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000686 obsolete absolute rate value @@ -11240,7 +10446,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000687 obsolete relative rate value @@ -11317,7 +10522,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -11347,7 +10551,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000693 obsolete late @@ -11403,7 +10606,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000696 obsolete texture value @@ -11415,7 +10617,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000697 obsolete relative texture value @@ -11427,7 +10628,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000698 obsolete floury @@ -11439,7 +10639,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000699 obsolete glutinous @@ -11495,7 +10694,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000702 obsolete threshold value @@ -11507,7 +10705,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000703 obsolete absolute threshold value @@ -11519,7 +10716,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000704 obsolete pain threshold value @@ -11531,7 +10727,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000705 obsolete relative threshold value @@ -11543,17 +10738,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A threshold which is relatively high. @@ -11579,7 +10763,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -11590,17 +10773,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A threshold which is relatively low. @@ -11626,7 +10798,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -11637,7 +10808,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000710 obsolete time value @@ -11649,7 +10819,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000711 obsolete absolute time value @@ -11661,7 +10830,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000712 obsolete bouts value @@ -11673,7 +10841,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000713 obsolete relative time value @@ -11685,7 +10852,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000714 obsolete latency value @@ -11697,7 +10863,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -11708,7 +10873,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -11719,7 +10883,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000717 obsolete viability value @@ -11771,7 +10934,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000720 obsolete yield value @@ -11783,7 +10945,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000721 obsolete absolute yield value @@ -11795,7 +10956,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000722 obsolete relative yield value @@ -11807,7 +10967,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000723 obsolete high yield @@ -11819,7 +10978,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000724 obsolete low yield @@ -11831,7 +10989,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000725 obsolete function value @@ -11843,7 +11000,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000726 obsolete autonomic function value @@ -11855,7 +11011,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000727 obsolete behavioral function value @@ -11867,7 +11022,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000728 obsolete metabolic function value @@ -11879,7 +11033,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000729 obsolete physiological function value @@ -11891,7 +11044,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000730 obsolete relative function value @@ -11903,7 +11055,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000731 obsolete body position value @@ -11915,7 +11066,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000732 obsolete body tone value @@ -11927,7 +11077,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000733 obsolete piloerection value @@ -11939,7 +11088,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000734 obsolete abdominal tone value @@ -11951,7 +11099,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000735 obsolete limb tone value @@ -11963,7 +11110,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000736 obsolete dysfunctional value @@ -11975,7 +11121,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000737 obsolete functional value @@ -11987,7 +11132,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000738 obsolete enzyme function value @@ -11999,7 +11143,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000739 obsolete absolute enzyme function value @@ -12011,7 +11154,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000740 obsolete relative enzyme function value @@ -12023,7 +11165,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000741 obsolete high enzyme function value @@ -12035,7 +11176,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000742 obsolete low enzyme function value @@ -12047,7 +11187,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000743 obsolete arousal value @@ -12059,7 +11198,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000744 obsolete balance value @@ -12071,7 +11209,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000745 obsolete behavioral quality value @@ -12083,7 +11220,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000746 obsolete consumption value @@ -12095,7 +11231,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000747 obsolete coordination value @@ -12107,7 +11242,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000748 obsolete discrimination value @@ -12119,7 +11253,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000749 obsolete gait value @@ -12131,7 +11264,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000750 obsolete learning and memory value @@ -12143,7 +11275,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000751 obsolete locomotor activity value @@ -12155,7 +11286,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000752 obsolete mating value @@ -12167,7 +11297,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000753 obsolete spontaneous activity value @@ -12179,7 +11308,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000754 obsolete startle response @@ -12191,7 +11319,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000755 obsolete vocalization value @@ -12203,7 +11330,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000756 obsolete transfer arousal value @@ -12282,17 +11408,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity. @@ -12315,17 +11430,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity. @@ -12348,7 +11452,6 @@ Association is weaker than correlation or proportionality. These relations may b - Diminished, damaged, or weakened. PATO:0001624 quality @@ -12408,7 +11511,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000765 obsolete absolute consumption value @@ -12420,7 +11522,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000766 obsolete relative consumption value @@ -12432,7 +11533,6 @@ Association is weaker than correlation or proportionality. These relations may b - A consumption which is relatively high. high consumption quality @@ -12456,7 +11556,6 @@ Association is weaker than correlation or proportionality. These relations may b - A consumption which is relatively low. low consumption quality @@ -12587,7 +11686,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000774 obsolete bizarre gate @@ -12599,7 +11697,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000775 obsolete learning value @@ -12611,7 +11708,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000776 obsolete memory value @@ -12623,7 +11719,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000777 obsolete long term memory value @@ -12635,7 +11730,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000778 obsolete short term memory value @@ -12647,7 +11741,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000779 obsolete absolute locomotor activity value @@ -12659,7 +11752,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000780 obsolete relative locomotor activity value @@ -12671,7 +11763,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000781 obsolete circulatory function value @@ -12683,7 +11774,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000782 obsolete defensive function value @@ -12695,7 +11785,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000783 obsolete digestive function value @@ -12707,7 +11796,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000784 obsolete excretory function value @@ -12719,7 +11807,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000785 obsolete muscle function value @@ -12731,7 +11818,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000786 obsolete neural function value @@ -12743,7 +11829,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000787 obsolete neurobehavioral function value @@ -12755,7 +11840,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000788 obsolete reproductive function value @@ -12767,7 +11851,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000789 obsolete respiratory function value @@ -12779,7 +11862,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000790 obsolete heart rate value @@ -12791,7 +11873,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000791 obsolete immune function value @@ -12803,7 +11884,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000792 obsolete repair function value @@ -12815,7 +11895,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000793 obsolete immubocompetent value @@ -12827,7 +11906,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000794 obsolete immunodeficient value @@ -12839,7 +11917,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000795 obsolete healing value @@ -12851,7 +11928,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000796 obsolete regeneration value @@ -12863,7 +11939,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000797 obsolete urination value @@ -12875,7 +11950,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000798 obsolete defecation value @@ -12887,7 +11961,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000799 obsolete muscle elevation value @@ -12899,7 +11972,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000800 obsolete muscle strength value @@ -12911,7 +11983,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000801 obsolete motor function value @@ -12923,7 +11994,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000802 obsolete sensory function value @@ -12935,7 +12005,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000803 obsolete tactile response value @@ -12947,7 +12016,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000804 obsolete motor performance value @@ -12959,7 +12027,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000805 obsolete auditory value @@ -12971,7 +12038,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000806 obsolete olfactory value @@ -12983,7 +12049,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000807 obsolete proprioreception value @@ -12995,7 +12060,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000808 obsolete reflex value @@ -13007,7 +12071,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000809 obsolete taste value @@ -13019,7 +12082,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000810 obsolete touch value @@ -13031,7 +12093,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000811 obsolete visual value @@ -13043,7 +12104,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000812 obsolete odor acuity value @@ -13055,7 +12115,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000813 obsolete odor type value @@ -13067,7 +12126,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000814 obsolete taste acuity value @@ -13079,7 +12137,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000815 obsolete absolute odor acuity value @@ -13091,7 +12148,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000816 obsolete relative odor acuity value @@ -13103,7 +12159,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000817 obsolete anosmia @@ -13115,7 +12170,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000818 obsolete concentration_quantity @@ -13127,7 +12181,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000819 obsolete quantity @@ -13139,7 +12192,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000820 obsolete absolute taste acuity value @@ -13151,7 +12203,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000821 obsolete relative taste acuity value @@ -13163,7 +12214,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000822 obsolete taste type value @@ -13175,7 +12225,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000823 obsolete quinine taste @@ -13187,7 +12236,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000824 obsolete water taste @@ -13199,7 +12247,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000825 obsolete visual ability value @@ -13211,7 +12258,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000826 obsolete visual acuity value @@ -13223,7 +12269,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000827 obsolete visual threshold value @@ -13235,7 +12280,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000828 obsolete visual placing value @@ -13247,7 +12291,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000829 obsolete absolute visual ability value @@ -13259,7 +12302,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000830 obsolete relative visual ability value @@ -13271,7 +12313,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000831 obsolete absolute visual acuity value @@ -13283,7 +12324,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000832 obsolete relative visual acuity value @@ -13295,7 +12335,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000833 obsolete absolute visual threshold value @@ -13307,7 +12346,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000834 obsolete relative visual threshold value @@ -13319,7 +12357,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000835 obsolete auditory acuity value @@ -13331,7 +12368,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000836 obsolete auditory ability value @@ -13343,7 +12379,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000837 obsolete auditory threshold value @@ -13355,7 +12390,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000838 obsolete absolute auditory ability value @@ -13367,7 +12401,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000839 obsolete relative auditory ability value @@ -13379,7 +12412,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000840 obsolete absolute auditory acuity value @@ -13391,7 +12423,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000841 obsolete relative auditory acuity value @@ -13403,7 +12434,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000842 obsolete absolute auditory threshold value @@ -13415,7 +12445,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000843 obsolete relative auditory threshold value @@ -13427,7 +12456,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000844 obsolete auditory acuity @@ -13439,7 +12467,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000845 obsolete auditory ability @@ -13451,7 +12478,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000846 obsolete auditory threshold @@ -13463,7 +12489,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000847 obsolete absolute auditory acuity @@ -13475,7 +12500,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000848 obsolete relative auditory acuity @@ -13487,7 +12511,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000849 obsolete absolute auditory ability @@ -13499,7 +12522,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000850 obsolete relative auditory ability @@ -13511,7 +12533,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000851 obsolete absolute auditory threshold @@ -13523,7 +12544,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000852 obsolete relative auditory threshold @@ -13535,7 +12555,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000853 obsolete blinking reflex value @@ -13547,7 +12566,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000854 obsolete contact righting reflex value @@ -13559,7 +12577,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000855 obsolete corneal reflex value @@ -13571,7 +12588,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000856 obsolete flinch reflex value @@ -13583,7 +12599,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000857 obsolete lordosis reflex value @@ -13595,7 +12610,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000858 obsolete ocular reflex value @@ -13607,7 +12621,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000859 obsolete pinna reflex value @@ -13619,7 +12632,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000860 obsolete postural reflex value @@ -13631,7 +12643,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000861 obsolete proboscis extension reflex value @@ -13643,7 +12654,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000862 obsolete pupillary reflex value @@ -13655,7 +12665,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000863 obsolete righting reflex value @@ -13667,7 +12676,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000864 obsolete spinal reflex value @@ -13679,7 +12687,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000865 obsolete startle reflex value @@ -13691,7 +12698,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000866 obsolete suckling reflex value @@ -13703,7 +12709,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000867 obsolete swallowing reflex value @@ -13715,7 +12720,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000868 obsolete vibrissae reflex value @@ -13727,7 +12731,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000869 obsolete prepulse inhibition value @@ -13739,7 +12742,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000870 obsolete relative neurobehavioral function value @@ -13751,7 +12753,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000871 obsolete aggressive @@ -13763,7 +12764,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000872 obsolete anxious @@ -13775,7 +12775,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000873 obsolete cataleptic @@ -13787,7 +12786,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000874 obsolete fearful @@ -13799,7 +12797,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000875 obsolete irritable @@ -13811,7 +12808,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000876 obsolete respiratory rate value @@ -13823,7 +12819,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000877 obsolete absolute respiratory rate value @@ -13835,7 +12830,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000878 obsolete relative respiratory rate value @@ -13847,7 +12841,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000879 obsolete fecundity value @@ -13859,7 +12852,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000880 obsolete fertility value @@ -13871,7 +12863,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000881 obsolete gestational period value @@ -13883,7 +12874,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000882 obsolete litter size value @@ -13895,7 +12885,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000883 obsolete female fertility value @@ -13907,7 +12896,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000884 obsolete hybrid fertility value @@ -13919,7 +12907,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000885 obsolete male fertility value @@ -13931,7 +12918,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000886 obsolete absolute litter size value @@ -13943,7 +12929,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000887 obsolete relative litter size value @@ -13977,7 +12962,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000889 obsolete cytoplasmic male sterility value @@ -14055,7 +13039,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000893 obsolete backcross fertility value @@ -14067,7 +13050,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000894 obsolete cytoplasmic sterility value @@ -14079,7 +13061,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000895 obsolete f1 fertility value @@ -14091,7 +13072,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000896 obsolete f2 fertility value @@ -14103,7 +13083,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000897 obsolete germ line dependent fertility value @@ -14115,7 +13094,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000898 obsolete intercross fertility value @@ -14127,7 +13105,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000899 obsolete soma dependent fertility value @@ -14139,7 +13116,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000900 obsolete backcross fertile @@ -14151,7 +13127,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality backcross infertile PATO:0000901 @@ -14164,7 +13139,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000902 obsolete chinsurah boro type value @@ -14176,7 +13150,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000903 obsolete cms-hl type value @@ -14188,7 +13161,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000904 obsolete wild abortive value @@ -14200,7 +13172,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000905 obsolete f1 fertile @@ -14212,7 +13183,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality F1 infertile PATO:0000906 @@ -14225,7 +13195,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000907 obsolete f2 fertile @@ -14237,7 +13206,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality F2 infertile PATO:0000908 @@ -14250,7 +13218,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000909 obsolete intercross fertile @@ -14262,7 +13229,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality intercross infertile PATO:0000910 @@ -14275,17 +13241,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A rate which is relatively low. @@ -14309,17 +13264,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A rate which is relatively high. @@ -14344,7 +13288,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000913 obsolete qualitative value @@ -14356,7 +13299,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000914 obsolete continuant @@ -14388,7 +13330,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000916 obsolete absolute thickness @@ -14400,7 +13341,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000917 obsolete relative thickness @@ -14433,7 +13373,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000919 obsolete absolute volume @@ -14445,7 +13384,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000920 obsolete relative volume @@ -14478,7 +13416,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000922 obsolete absolute width @@ -14490,7 +13427,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000923 obsolete relative width @@ -14502,7 +13438,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000924 obsolete relative enzyme function @@ -14514,7 +13449,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000925 obsolete absolute enzyme function @@ -14526,7 +13460,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000926 obsolete intercross fertility @@ -14559,7 +13492,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000928 obsolete absolute photosensitivity @@ -14571,7 +13503,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000929 obsolete light intensivity sensitivity @@ -14583,7 +13514,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000930 obsolete light_quality sensitivity @@ -14595,7 +13525,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000931 obsolete blue light sensitivity @@ -14607,7 +13536,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000932 obsolete far red light sensitivity @@ -14619,7 +13547,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000933 obsolete red light sensitivity @@ -14631,7 +13558,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000934 obsolete u v light sensitivity @@ -14643,7 +13569,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000935 obsolete relative photosensitivity @@ -14718,7 +13643,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000939 @@ -14731,7 +13655,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000940 @@ -14765,7 +13688,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -14776,7 +13698,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -15081,7 +14002,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000958 obsolete opacity value @@ -15093,7 +14013,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000959 obsolete relative opacity @@ -15105,7 +14024,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000960 obsolete absolute opacity @@ -15117,7 +14035,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000961 obsolete relative opacity value @@ -15129,7 +14046,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000962 obsolete absolute opacity value @@ -15207,7 +14123,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000966 obsolete symmetry value @@ -15248,7 +14163,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000968 obsolete albino value @@ -15301,7 +14215,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000971 obsolete absolute permeability @@ -15313,7 +14226,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000972 obsolete relative permeability @@ -15346,7 +14258,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000974 obsolete relative porosity @@ -15358,7 +14269,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000975 obsolete absolute porosity @@ -15370,7 +14280,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000976 obsolete permeability value @@ -15382,7 +14291,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000977 obsolete absolute permeability value @@ -15394,7 +14302,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000978 obsolete relative permeability value @@ -15406,7 +14313,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000979 obsolete porosity value @@ -15418,7 +14324,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000980 obsolete absolute porosity value @@ -15430,7 +14335,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000981 obsolete relative porosity value @@ -15529,7 +14433,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000986 obsolete absolute consistency @@ -15541,7 +14444,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000987 obsolete relative consistency @@ -15553,7 +14455,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000988 obsolete relative consistency value @@ -15565,7 +14466,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000989 obsolete absolute consistency value @@ -15577,7 +14477,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000990 obsolete consistent @@ -15589,7 +14488,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000991 obsolete inconsistent @@ -15621,7 +14519,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000993 obsolete relative viscosity @@ -15633,7 +14530,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000994 obsolete absolute viscosity @@ -15645,7 +14541,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000995 obsolete viscosity value @@ -15657,7 +14552,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000996 obsolete absolute viscosity value @@ -15669,7 +14563,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000997 obsolete relative viscosity value @@ -15721,7 +14614,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001000 obsolete relative alternation @@ -15733,7 +14625,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001001 obsolete absolute alternation @@ -15745,7 +14636,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001002 obsolete alternation value @@ -15757,7 +14647,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001003 obsolete relative alternation value @@ -15769,7 +14658,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001004 obsolete absolute alternation value @@ -15801,7 +14689,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001006 obsolete absolute latency @@ -15813,7 +14700,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001007 obsolete relative latency @@ -15825,7 +14711,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001008 obsolete absolute latency value @@ -15837,7 +14722,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001009 obsolete relative latency value @@ -15849,7 +14733,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001010 obsolete relative intensity @@ -15861,7 +14744,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001011 obsolete absolute intensity @@ -15873,7 +14755,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001012 obsolete relative intensity value @@ -15885,7 +14766,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001013 obsolete absolute intensity value @@ -15897,7 +14777,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001014 obsolete absolute occurence @@ -15909,7 +14788,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001015 obsolete relative occurence @@ -15921,7 +14799,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001016 obsolete absolute occurence value @@ -15933,7 +14810,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001017 obsolete relative occurence value @@ -16125,7 +15001,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001027 obsolete physical quantity @@ -16217,7 +15092,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -16228,7 +15102,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001033 obsolete stiffness @@ -16280,7 +15153,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001036 obsolete relative life span @@ -16292,7 +15164,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001037 obsolete absolute life span @@ -16304,7 +15175,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001038 obsolete ratio @@ -16316,7 +15186,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001039 obsolete absolute ratio @@ -16328,7 +15197,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001040 obsolete relative ratio @@ -16340,7 +15208,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001041 obsolete relative amplitude @@ -16352,7 +15219,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001042 obsolete absolute amplitude @@ -16387,7 +15253,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001044 obsolete absolute power @@ -16399,7 +15264,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001045 obsolete relative power @@ -16435,7 +15299,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001047 obsolete absolute resistance @@ -16447,7 +15310,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001048 obsolete relative resistance @@ -16459,7 +15321,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001049 obsolete absolute susceptibility @@ -16471,7 +15332,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001050 obsolete relative susceptibility @@ -16583,7 +15443,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001056 obsolete number @@ -16595,7 +15454,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001057 obsolete relative acceleration @@ -16607,7 +15465,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001058 obsolete absolute acceleration @@ -16619,7 +15476,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001059 obsolete relative efficiency @@ -16631,7 +15487,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001060 obsolete absolute efficiency @@ -16643,7 +15498,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001061 obsolete relative elasticity @@ -16655,7 +15509,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001062 obsolete absolute elasticity @@ -16667,7 +15520,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001063 obsolete relative flux @@ -16679,7 +15531,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001064 obsolete absolute flux @@ -16691,7 +15542,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001065 obsolete relative stiffness @@ -16703,7 +15553,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001066 obsolete absolute stiffness @@ -16715,7 +15564,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001067 obsolete absolute strain @@ -16727,7 +15575,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001068 obsolete relative strain @@ -16739,7 +15586,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001069 obsolete relative density @@ -16751,7 +15597,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001070 obsolete absolute density @@ -16763,7 +15608,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001071 obsolete relative energy @@ -16775,7 +15619,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001072 obsolete absolute energy @@ -16787,7 +15630,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001073 obsolete relative impulse @@ -16799,7 +15641,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001074 obsolete absolute impulse @@ -16811,7 +15652,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001075 obsolete absolute momentum @@ -16823,7 +15663,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001076 obsolete relative momentum @@ -16835,7 +15674,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001077 obsolete absolute pressure @@ -16847,7 +15685,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001078 obsolete relative pressure @@ -16859,7 +15696,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001079 obsolete absolute work @@ -16871,7 +15707,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001080 obsolete relative work @@ -16883,7 +15718,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001081 obsolete physical measure value @@ -16895,7 +15729,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001082 obsolete damage value @@ -16907,7 +15740,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001083 obsolete acceleration value @@ -16919,7 +15751,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001084 obsolete relative acceleration value @@ -16931,7 +15762,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001085 obsolete absolute acceleration value @@ -16943,7 +15773,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001086 obsolete efficiency value @@ -16955,7 +15784,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001087 obsolete relative efficiency value @@ -16967,7 +15795,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001088 obsolete absolute efficiency value @@ -16979,7 +15806,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001089 obsolete elasticity value @@ -16991,7 +15817,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001090 obsolete absolute elasticity value @@ -17003,7 +15828,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001091 obsolete relative elasticity value @@ -17015,7 +15839,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001092 obsolete flux value @@ -17027,7 +15850,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001093 obsolete relative flux value @@ -17039,7 +15861,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001094 obsolete absolute flux value @@ -17051,7 +15872,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001095 obsolete force value @@ -17063,7 +15883,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001096 obsolete absolute force value @@ -17075,7 +15894,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001097 obsolete relative force value @@ -17087,7 +15905,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001098 obsolete absolute force @@ -17099,7 +15916,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001099 obsolete relative force @@ -17111,7 +15927,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001100 obsolete position value @@ -17123,7 +15938,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001101 obsolete stiffness value @@ -17135,7 +15949,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001102 obsolete absolute stiffness value @@ -17147,7 +15960,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001103 obsolete relative stiffness value @@ -17159,7 +15971,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001104 obsolete strain value @@ -17171,7 +15982,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001105 obsolete absolute strain value @@ -17183,7 +15993,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001106 obsolete relative strain value @@ -17195,7 +16004,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001107 obsolete density value @@ -17207,7 +16015,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001108 obsolete relative amplitude value @@ -17219,7 +16026,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001109 obsolete absolute amplitude value @@ -17231,7 +16037,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001110 obsolete absolute density value @@ -17243,7 +16048,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001111 obsolete relative density value @@ -17255,7 +16059,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001112 obsolete energy value @@ -17267,7 +16070,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001113 obsolete absolute energy value @@ -17279,7 +16081,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001114 obsolete relative energy value @@ -17291,7 +16092,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001115 obsolete impulse value @@ -17303,7 +16103,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001116 obsolete relative impulse value @@ -17315,7 +16114,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001117 obsolete absolute impulse value @@ -17327,7 +16125,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001118 obsolete momentum value @@ -17339,7 +16136,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001119 obsolete absolute momentum value @@ -17351,7 +16147,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001120 obsolete relative momentum value @@ -17363,7 +16158,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001121 obsolete power value @@ -17375,7 +16169,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001122 obsolete absolute power value @@ -17387,7 +16180,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001123 obsolete relative power value @@ -17399,7 +16191,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001124 obsolete pressure value @@ -17411,7 +16202,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001125 obsolete absolute pressure value @@ -17423,7 +16213,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001126 obsolete relative pressure value @@ -17435,7 +16224,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001127 obsolete work value @@ -17447,7 +16235,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001128 obsolete absolute work value @@ -17459,7 +16246,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001129 obsolete relative work value @@ -17471,7 +16257,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001130 obsolete ratio value @@ -17483,7 +16268,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001131 obsolete absolute ratio value @@ -17495,7 +16279,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001132 obsolete relative ratio value @@ -17507,7 +16290,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001133 obsolete immunoglobulin concentration @@ -17519,7 +16301,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001134 obsolete ig a concentration @@ -17531,7 +16312,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001135 obsolete ig d concentration @@ -17543,7 +16323,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001136 obsolete ig e concentration @@ -17555,7 +16334,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001137 obsolete ig g concentration @@ -17567,7 +16345,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001138 obsolete ig m concentration @@ -17579,7 +16356,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001139 obsolete urine glucose composition @@ -17591,7 +16367,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001140 obsolete immunoglobulin concentration value @@ -17603,7 +16378,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001141 obsolete ig a concentration value @@ -17615,7 +16389,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001142 obsolete ig d concentration value @@ -17627,7 +16400,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001143 obsolete ig e concentration value @@ -17639,7 +16411,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001144 obsolete ig g concentration value @@ -17651,7 +16422,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001145 obsolete ig m concentration value @@ -17663,7 +16433,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001146 obsolete resistance value @@ -17675,7 +16444,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001147 obsolete absolute resistance value @@ -17687,7 +16455,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001148 obsolete relative resistance value @@ -17699,7 +16466,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001149 obsolete susceptibility value @@ -17711,7 +16477,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001150 obsolete absolute susceptibility value @@ -17723,7 +16488,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001151 obsolete relative susceptibility value @@ -17802,7 +16566,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001155 obsolete absolute concentration @@ -17814,7 +16577,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001156 obsolete relative concentration @@ -17826,7 +16588,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001157 obsolete absolute concentration value @@ -17838,7 +16599,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001158 obsolete relative concentration value @@ -17870,7 +16630,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001160 obsolete unconcentrated @@ -17902,17 +16661,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A concentration which is higher relative to the normal or average. @@ -17936,17 +16684,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A concentration which is lower relative to the normal or average. @@ -17990,7 +16727,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001165 obsolete urine enzyme composition value @@ -18002,7 +16738,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001166 obsolete urine enzyme composition @@ -18055,7 +16790,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -18066,7 +16800,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001170 obsolete numerical value @@ -18123,7 +16856,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001173 obsolete urine glucose composition value @@ -18135,7 +16867,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001174 obsolete urine composition @@ -18147,7 +16878,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001175 obsolete urine composition @@ -18159,7 +16889,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001176 obsolete deaf @@ -18171,7 +16900,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001177 obsolete blind @@ -18205,7 +16933,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001179 obsolete immune @@ -18217,7 +16944,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001180 obsolete relative response @@ -18229,7 +16955,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001181 obsolete absolute response @@ -18241,7 +16966,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001182 obsolete relative response @@ -18253,7 +16977,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001183 obsolete absolute response value @@ -18265,7 +16988,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001184 obsolete maturity value @@ -18414,17 +17136,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent. @@ -18472,17 +17183,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent. @@ -18551,7 +17251,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001197 obsolete modified direction @@ -18563,7 +17262,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001198 obsolete unmodified direction @@ -18636,7 +17334,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -18647,7 +17344,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -18658,7 +17354,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001204 @@ -18717,7 +17412,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001207 obsolete absolute compatability @@ -18749,7 +17443,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001209 obsolete absolute function @@ -18761,7 +17454,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001210 obsolete plane_angle_quantity @@ -18773,7 +17465,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001211 obsolete solid_angle_quantity @@ -18785,7 +17476,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001212 obsolete length_unit @@ -18797,7 +17487,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001213 obsolete mass_unit @@ -18809,7 +17498,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001214 obsolete temparature_unit @@ -18821,7 +17509,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001215 obsolete time_unit @@ -18833,7 +17520,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001216 obsolete volume_unit @@ -18845,7 +17531,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001217 obsolete energy_unit @@ -18857,7 +17542,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001218 obsolete substance_unit @@ -18869,7 +17553,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001219 obsolete area_unit @@ -18881,7 +17564,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001220 obsolete angle_unit @@ -18893,7 +17575,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001221 obsolete plane_angle_unit @@ -18905,7 +17586,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001222 obsolete solid_angle_unit @@ -18917,7 +17597,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001223 obsolete quantitative value @@ -18929,7 +17608,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001224 obsolete real number @@ -18941,7 +17619,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001225 obsolete relational number @@ -18953,7 +17630,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -18986,7 +17662,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001228 obsolete dull @@ -19040,7 +17715,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001231 obsolete cold insensitive @@ -19052,7 +17726,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001232 obsolete heat insentive @@ -19111,7 +17784,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001235 obsolete strength value @@ -19124,6 +17796,7 @@ Association is weaker than correlation or proportionality. These relations may b + A quality which inheres in an process. PATO:0001239 PATO:0001240 @@ -19148,7 +17821,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -19159,7 +17831,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -19170,7 +17841,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -19181,7 +17851,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -19842,7 +18511,6 @@ Association is weaker than correlation or proportionality. These relations may b - A color consisting of grey color and high saturation. quality PATO:0001273 @@ -19862,7 +18530,6 @@ Association is weaker than correlation or proportionality. These relations may b - A color consisting of grey color and low saturation. quality PATO:0001274 @@ -19962,7 +18629,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -20425,7 +19091,7 @@ Association is weaker than correlation or proportionality. These relations may b - + A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing. quality variability of a physical quality @@ -20470,17 +19136,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A temperature which is relatively high. @@ -20505,17 +19160,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A temperature which is relatively low. @@ -20540,20 +19184,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - - - + A variability of temperature which is relatively low. low variability of temperature @@ -20574,20 +19206,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - - - + A variability of temperature which is relatively high. high variability of temperature @@ -20651,17 +19271,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A duration of temperature which is lesser relative to the normal or average enduring or continuing in time. @@ -20683,17 +19292,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time. @@ -20996,7 +19594,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001326 @@ -21190,7 +19787,6 @@ Association is weaker than correlation or proportionality. These relations may b - A biological sex quality inhering in an individual whose sex is unknown. quality PATO:0001336 @@ -21734,7 +20330,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -23340,7 +21935,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -23507,7 +22101,6 @@ Association is weaker than correlation or proportionality. These relations may b - An extended swelling in plant organs caused primarily by an excessive accumulation of water. quality edemic @@ -23529,7 +22122,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -23921,7 +22513,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -23932,17 +22523,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A depth which is relatively low. @@ -24008,17 +22588,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A position which is relatively high. @@ -24041,17 +22610,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A positional which is relatively low. @@ -24115,7 +22673,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -24191,14 +22748,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - Absence of an organ, tissue or cell due to failure to develop from a primordium or precursor cell. @@ -24330,7 +22879,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -24483,7 +23031,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -24690,7 +23237,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -24792,7 +23338,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -25509,17 +24054,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A sensitivity toward an external stimulus which is higher than normal/average. @@ -25545,17 +24079,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A sensitivity toward an external stimulus which is lower than normal/average. @@ -25581,17 +24104,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A sensitivity of a process which is higher than normal or average. @@ -25616,17 +24128,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A sensitivity of a process which is lower than normal or average. @@ -25651,17 +24152,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A sensitivity of occurrent to oxygen which is higher than normal or average. @@ -25685,17 +24175,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A sensitivity of a process to oxygen which is lower than normal or average. @@ -25752,7 +24231,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -25763,7 +24241,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -25800,17 +24277,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A functionality quality which is held by the bearer when the latter is able to perform additional or different function(s). @@ -25833,7 +24299,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -25865,17 +24330,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A mass which is lower than normal or average. @@ -25900,17 +24354,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A mass which is higher than normal or average. @@ -25954,7 +24397,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -26010,7 +24452,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -26021,7 +24462,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -26072,7 +24512,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -26123,17 +24562,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A pressure which is relatively low. @@ -26156,17 +24584,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A pressure which is relatively high. @@ -26189,17 +24606,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A permeability which is relatively high. @@ -26223,17 +24629,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A permeability which is relatively low. @@ -26278,17 +24673,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A contractility which is relatively high. @@ -26312,17 +24696,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A contractility which is relatively low. @@ -26346,7 +24719,6 @@ Association is weaker than correlation or proportionality. These relations may b - A spatial quality inhering in an inactive muscle or muscle fibers by virtue of the bearer's exhibiting gradual lengthening. quality PATO:0001582 @@ -26366,20 +24738,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - - - + A variability which is relatively low. low variability @@ -26400,20 +24760,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - - - + A variability which is relatively high. high variability @@ -26481,20 +24829,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - - - + A variability of rate which is relatively high. high variability of rate @@ -26515,20 +24851,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - - - + A variability of rate which is relatively low. low variability of rate @@ -26549,7 +24873,6 @@ Association is weaker than correlation or proportionality. These relations may b - Increased, intensified. PATO:0002017 quality @@ -26610,17 +24933,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A curvature which is relatively high. @@ -26642,17 +24954,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A curvature which is relatively low. @@ -26713,17 +25014,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A depth quality which is relatively high. @@ -26871,17 +25161,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A life span which is relatively high. @@ -26903,17 +25182,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A life span which is relatively low. @@ -27035,7 +25303,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -27071,20 +25338,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - - - + A variability of color which is relatively high. high variability of color @@ -27105,20 +25360,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - - - + A variability of color which is relatively low. low variability of color @@ -27179,7 +25422,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -27211,17 +25453,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A tonicity which is relatively high. @@ -27245,17 +25476,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A tonicity which is relatively low. @@ -27299,17 +25519,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A turgor which is relatively low. @@ -27333,17 +25542,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A turgor which is relatively high. @@ -27389,17 +25587,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s). @@ -27433,17 +25620,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s). @@ -27572,7 +25748,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -27748,7 +25923,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -27759,7 +25933,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -27770,7 +25943,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -27800,7 +25972,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -27854,7 +26025,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -27904,17 +26074,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A resistance to a stimulus which is relatively high. @@ -27940,17 +26099,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A resistance to a stimulus which is relatively low. @@ -28069,17 +26217,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A osmolarity which is relatively low. @@ -28103,17 +26240,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A osmolarity which is relatively high. @@ -28178,7 +26304,6 @@ Association is weaker than correlation or proportionality. These relations may b - An action potential which is relatively low. low action potential quality @@ -28199,7 +26324,6 @@ Association is weaker than correlation or proportionality. These relations may b - An action potential which is relatively high. high action potential quality @@ -28241,17 +26365,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A solubility which is relatively high. @@ -28276,17 +26389,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A solubility which is relatively low. @@ -28334,7 +26436,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -28390,17 +26491,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A susceptibility toward an external stimulus which is higher than normal/average. @@ -28426,17 +26516,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A susceptibility toward an external stimulus which is lower than normal/average. @@ -28462,17 +26541,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A distribution which is relatively high. @@ -28495,17 +26563,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A distribution which is relatively low. @@ -28570,17 +26627,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An efficiency which is relatively low. @@ -28603,17 +26649,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An efficiency which is relatively high. @@ -28759,17 +26794,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A magnetism which is relatively high. @@ -28793,17 +26817,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A magnetism which is relatively low. @@ -28889,17 +26902,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An elevation which is relatively high. @@ -28923,17 +26925,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An elevation which is relatively low. @@ -29001,7 +26992,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -29012,17 +27002,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A viscosity which relatively high. @@ -29046,17 +27025,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A viscosity which relatively low. @@ -29080,17 +27048,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A fecundity which is relatively high. @@ -29114,17 +27071,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A fecundity which is relatively low. @@ -29148,17 +27094,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A photosensitivity which is relatively low. @@ -29183,17 +27118,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A photosensitivity which is relatively high. @@ -29480,17 +27404,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A perimeter which is relatively high. @@ -29512,17 +27425,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A perimeter which is relatively low. @@ -29544,17 +27446,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A diameter which is relatively large. @@ -29576,17 +27467,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A diameter which is relatively small. @@ -29731,7 +27611,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -29742,17 +27621,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A female receptivity which is relatively high. @@ -29776,17 +27644,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A female receptivity which is relatively low. @@ -29810,17 +27667,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A male receptivity which is relatively high. @@ -29844,17 +27690,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A male receptivity which is relatively low. @@ -30183,17 +28018,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A radioactivity which is relatively low. @@ -30216,17 +28040,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A radioactivity which is relatively high. @@ -30629,17 +28442,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An age which is high relative to the normal or average. @@ -30662,17 +28464,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An age which is low relative to the normal or average. @@ -30695,7 +28486,6 @@ Association is weaker than correlation or proportionality. These relations may b - A cellular quality inhering in a cell by virtue of its anisotropic intracellular organization. PATO:0001769 quality @@ -30796,7 +28586,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -30888,17 +28677,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A flexibility which is relatively high. @@ -30922,17 +28700,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A flexibility which is relatively low. @@ -30956,17 +28723,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A strength which is relatively high. @@ -30989,17 +28745,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A strength which is relatively low. @@ -31062,17 +28807,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An intensity which is relatively high. @@ -31095,17 +28829,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An intensity which is relatively low. @@ -31220,17 +28943,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A density which is higher relative to the normal or average. @@ -31274,17 +28986,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A density which is lower relative to the normal or average. @@ -31389,17 +29090,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A coiling which is relatively high. @@ -31423,17 +29113,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A coiling which is relatively low. @@ -31457,7 +29136,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -31530,17 +29208,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A composition quality inhering in an bearer by virtue of the reduction in amount of water the bearer contains. @@ -31664,17 +29331,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A sensitivity to irradiation which is relatively low. @@ -31698,17 +29354,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A sensitivity to irradiation which is relatively high. @@ -31771,7 +29416,6 @@ Association is weaker than correlation or proportionality. These relations may b - A relaxation which is relatively high. high relaxation quality @@ -31793,7 +29437,6 @@ Association is weaker than correlation or proportionality. These relations may b - A relaxation which is relatively low. low relaxation quality @@ -31965,7 +29608,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -32062,17 +29704,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A wetness quality that is relatively high. @@ -32094,17 +29725,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A wetness quality that is relatively low. @@ -32184,17 +29804,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A female fertility which is relatively low. @@ -32218,17 +29827,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A female fertility which is relatively high. @@ -32252,17 +29850,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A male fertility which is relatively high. @@ -32286,17 +29873,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A male fertility which is relatively low. @@ -32320,17 +29896,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A fertility which is relatively low. @@ -32354,17 +29919,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A fertility which is relatively high. @@ -32408,7 +29962,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -32419,17 +29972,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A flow that is relatively low. @@ -32452,17 +29994,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A fluid flow that is relatively high. @@ -32485,7 +30016,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -32538,17 +30068,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An acidity which is relatively low. @@ -32571,17 +30090,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An acidity which is relatively high. @@ -32902,17 +30410,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A coordination which is relatively high. @@ -32936,17 +30433,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A coordination which is relatively low. @@ -33036,7 +30522,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -33653,17 +31138,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An odor quality of having decreased odor. @@ -33685,17 +31159,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An odor quality of having increased odor. @@ -33790,17 +31253,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A circumference which is relatively high. @@ -33822,17 +31274,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A circumference which is relatively low. @@ -34361,17 +31802,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A fluorescence which is higher than normal. @@ -34394,17 +31824,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A fluorescence which is lower than normal. @@ -34650,7 +32069,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -35004,20 +32422,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - - - + A variability of size which is relatively low. low variability of size @@ -35038,20 +32444,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - - - + A variability of size which is relatively high. high variability of size @@ -35770,6 +33164,7 @@ Association is weaker than correlation or proportionality. These relations may b + A quality that inheres in an entire organism or part of an organism. quality PATO:0001995 @@ -35787,7 +33182,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -35798,17 +33192,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An amount which is relatively low. @@ -35905,17 +33288,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. @@ -35942,17 +33314,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. @@ -36000,7 +33361,6 @@ Association is weaker than correlation or proportionality. These relations may b - A shape that inheres in a part of a surface. An object can have different surface shapes on different parts of its surface. quality PATO:0002004 @@ -36234,7 +33594,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -36466,17 +33825,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An osmolality which is relatively low. @@ -36502,17 +33850,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An osmolality which is relatively high. @@ -36799,17 +34136,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An anterior-posterior diameter quality which is relatively small. @@ -36832,17 +34158,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An anterior-posterior diameter quality which is relatively large. @@ -37025,17 +34340,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An occurrence which is relatively high. @@ -37059,17 +34363,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An occurrence which is relatively low. @@ -37137,17 +34430,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A fragility which is relatively high. @@ -37172,17 +34454,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A fragility which is relatively low. @@ -37207,17 +34478,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An area which is relatively high. @@ -37241,17 +34501,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An area which is relatively low. @@ -37317,7 +34566,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -37524,17 +34772,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An affinity which is relatively high. @@ -37560,17 +34797,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An affinity which is relatively low. @@ -37620,17 +34846,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An avidity which is relatively high. @@ -37656,17 +34871,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An avidity which is relatively low. @@ -37756,7 +34960,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -37852,7 +35055,6 @@ Association is weaker than correlation or proportionality. These relations may b - The period after death of the organism. George Gkoutos 2009-09-25T11:29:21Z @@ -37875,7 +35077,6 @@ Association is weaker than correlation or proportionality. These relations may b - The period before death of the organism. George Gkoutos 2009-09-25T11:31:13Z @@ -37898,7 +35099,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -38086,7 +35286,6 @@ Association is weaker than correlation or proportionality. These relations may b - A disposition inhering in a tumour to progress or fail to progress during it's life time. george 2009-10-05T12:15:02Z @@ -39178,17 +36377,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A radiopacity that is relatively high. @@ -39213,17 +36401,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A radiopacity that is relatively low. @@ -39271,17 +36448,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A virulence that is relatively low. @@ -39306,17 +36472,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A virulence that is relatively high. @@ -39545,7 +36700,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -39556,7 +36710,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -39567,7 +36720,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -39599,17 +36751,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch of an increased apical height. @@ -40902,17 +38043,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups. @@ -40937,17 +38067,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully. @@ -41451,17 +38570,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A force which relative high. @@ -41486,17 +38594,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A force which is relative low. @@ -41597,17 +38694,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A degree of pigmentation quality that is relatively high. @@ -41633,17 +38719,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A degree of pigmentation quality that is relative low. @@ -42316,17 +39391,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A mobility which is relative high. @@ -42350,17 +39414,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A mobility which is relative low. @@ -42450,17 +39503,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An elasticity which is relatively high. @@ -42484,17 +39526,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An elasticity which is relatively low. @@ -42681,17 +39712,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A cellular motility which is lower relative to the normal or average. @@ -42713,17 +39733,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A cellular motility which is higher relative to the normal or average. @@ -42769,17 +39778,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - @@ -42807,17 +39805,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - @@ -42845,17 +39832,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A quality of a process that has a value that is decreased compared to normal or average. @@ -42878,17 +39854,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A quality of an object that has a value that is decreased compared to normal or average. @@ -42911,17 +39876,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A quality of a process that has a value that is increased compared to normal or average. @@ -42944,17 +39898,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A quality of an object that has a value that is increased compared to normal or average. @@ -43442,17 +40385,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An angle which is relatively high. @@ -43477,17 +40409,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - An angle which is relatively low. @@ -43600,17 +40521,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A adhesivity which is relatively high. @@ -43634,17 +40544,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A adhesivity which is relatively low. @@ -44218,17 +41117,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A tendency which is relatively high. @@ -44254,17 +41142,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A tendency which is relatively low. @@ -44694,17 +41571,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A waxiness which is relatively high. @@ -44728,17 +41594,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A waxiness which is relatively low. @@ -44950,17 +41805,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus. @@ -44985,17 +41829,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - - - - - - A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus. @@ -45085,7 +41918,6 @@ Association is weaker than correlation or proportionality. These relations may b - gkoutos 2012-12-07T05:34:16Z quality @@ -46642,17 +43474,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - - - - - - A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position. @@ -46676,17 +43497,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - - - - - - A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position. @@ -47906,7 +44716,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - PATO:0002628 quality PATO:0002528 @@ -47920,7 +44729,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - PATO:0002629 quality PATO:0002529 @@ -47934,7 +44742,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - PATO:0002630 quality PATO:0002530 @@ -47948,7 +44755,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - PATO:0002631 quality PATO:0002531 @@ -47962,7 +44768,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - PATO:0002632 quality PATO:0002532 @@ -48871,17 +45676,6 @@ height'). - - - - - - - - - - - A propagation velocity that is higher than normal. @@ -48903,17 +45697,6 @@ height'). - - - - - - - - - - - A propagation velocity that is lower than normal. @@ -48956,14 +45739,6 @@ height'). - - - - - - - - Absence due to a degenerative process. @@ -49006,17 +45781,6 @@ height'). - - - - - - - - - - - A decrease in the ability of a process to produce its output. @@ -49039,17 +45803,6 @@ height'). - - - - - - - - - - - A increase in the ability of a process to produce its output. @@ -49127,7 +45880,7 @@ height'). - + A quality inhering in a bearer by virtue of the degree to which the bearers stands out or projects beyond a surface or line. quality PATO:0015007 @@ -49184,17 +45937,6 @@ height'). - - - - - - - - - - - An increase in humidity. @@ -49217,17 +45959,6 @@ height'). - - - - - - - - - - - An decrease in humidity. @@ -49287,17 +46018,6 @@ height'). - - - - - - - - - - - An increase in illumination. @@ -49320,17 +46040,6 @@ height'). - - - - - - - - - - - An decrease in illumination. @@ -49473,17 +46182,6 @@ height'). - - - - - - - - - - - An increase in combustibility. @@ -49500,17 +46198,6 @@ height'). - - - - - - - - - - - An decrease in combustibility. @@ -49527,17 +46214,6 @@ height'). - - - - - - - - - - - An increase in porosity. @@ -49558,17 +46234,6 @@ height'). - - - - - - - - - - - An decrease in porosity. @@ -49610,17 +46275,6 @@ height'). - - - - - - - - - - - An increase in stability. @@ -49642,17 +46296,6 @@ height'). - - - - - - - - - - - A decrease in stability. @@ -50421,17 +47064,6 @@ height'). - - - - - - - - - - - A rate which is relatively normal. @@ -50447,17 +47079,6 @@ height'). - - - - - - - - - - - @@ -50478,17 +47099,6 @@ height'). - - - - - - - - - - - An acidity which is relatively normal. @@ -50503,17 +47113,6 @@ height'). - - - - - - - - - - - A adhesivity which is relatively normal or average. @@ -50530,17 +47129,6 @@ height'). - - - - - - - - - - - An affinity which is relatively normal or average. @@ -50557,17 +47145,6 @@ height'). - - - - - - - - - - - An age which is relatively normal or average. @@ -50584,17 +47161,6 @@ height'). - - - - - - - - - - - An avidity which is relatively normal or average. @@ -50612,17 +47178,6 @@ height'). - - - - - - - - - - - A behavioural quality of a process inhering in a bearer by virtue of the bearer's exhibiting normal or average activity. @@ -50639,17 +47194,6 @@ height'). - - - - - - - - - - - A cellular motility which is normal or average. @@ -50666,17 +47210,6 @@ height'). - - - - - - - - - - - A coiling which is normal or average. @@ -50694,17 +47227,6 @@ height'). - - - - - - - - - - - A concentration which is relatively normal or average. @@ -50722,17 +47244,6 @@ height'). - - - - - - - - - - - A contractility which is relatively normal or average. @@ -50750,17 +47261,6 @@ height'). - - - - - - - - - - - A coordination which is relatively normal or average. @@ -50778,17 +47278,6 @@ height'). - - - - - - - - - - - A curvature which is relatively normal or average. @@ -50805,17 +47294,6 @@ height'). - - - - - - - - - - - A distance which is relatively normal or average. @@ -50833,17 +47311,6 @@ height'). - - - - - - - - - - - An efficiency which is relatively normal or average. @@ -50860,17 +47327,6 @@ height'). - - - - - - - - - - - An elasticity which is relatively normal or average. @@ -50887,17 +47343,6 @@ height'). - - - - - - - - - - - A fecundity which is relatively normal or average. @@ -50915,17 +47360,6 @@ height'). - - - - - - - - - - - A female fertility which is relatively normal or average. @@ -50943,17 +47377,6 @@ height'). - - - - - - - - - - - A female receptivity which is relatively normal or average. @@ -50971,17 +47394,6 @@ height'). - - - - - - - - - - - A fertility which is relatively normal or average. @@ -50999,17 +47411,6 @@ height'). - - - - - - - - - - - A flexibility which is relatively normal or average. @@ -51027,17 +47428,6 @@ height'). - - - - - - - - - - - A fluid flow which is relatively normal or average. @@ -51054,17 +47444,6 @@ height'). - - - - - - - - - - - A fluorescence which is relatively normal or average. @@ -51081,17 +47460,6 @@ height'). - - - - - - - - - - - A force which is relatively normal or average. @@ -51108,17 +47476,6 @@ height'). - - - - - - - - - - - A fragility which is relatively normal or average. @@ -51136,17 +47493,6 @@ height'). - - - - - - - - - - - A life span which is relatively normal or average. @@ -51162,17 +47508,6 @@ height'). - - - - - - - - - - - A magnetism which is relatively normal or average. @@ -51190,17 +47525,6 @@ height'). - - - - - - - - - - - A male fertility which is relatively normal or average. @@ -51218,17 +47542,6 @@ height'). - - - - - - - - - - - A male receptivity which is relatively normal or average. @@ -51246,17 +47559,6 @@ height'). - - - - - - - - - - - A mass which is relatively normal or average. @@ -51273,17 +47575,6 @@ height'). - - - - - - - - - - - A density which is relatively normal or average. @@ -51300,17 +47591,6 @@ height'). - - - - - - - - - - - A mobility which is relatively normal or average. @@ -51327,17 +47607,6 @@ height'). - - - - - - - - - - - An odor quality of having relatively normal or average odor. @@ -51354,17 +47623,6 @@ height'). - - - - - - - - - - - An osmolality which is relatively normal or average odor. @@ -51382,17 +47640,6 @@ height'). - - - - - - - - - - - An osmolarity which is relatively normal or average odor. @@ -51410,17 +47657,6 @@ height'). - - - - - - - - - - - A permeability which is relatively normal or average. @@ -51438,17 +47674,6 @@ height'). - - - - - - - - - - - A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a normal or average extent. @@ -51465,17 +47690,6 @@ height'). - - - - - - - - - - - A photosensitivity which is relatively normal or average @@ -51494,17 +47708,6 @@ height'). - - - - - - - - - - - A degree of pigmentation quality which is relatively normal or average @@ -51522,17 +47725,6 @@ height'). - - - - - - - - - - - A position which is relatively normal or average @@ -51549,17 +47741,6 @@ height'). - - - - - - - - - - - An angle which is relatively normal or average @@ -51577,17 +47758,6 @@ height'). - - - - - - - - - - - A distribution which is relatively normal or average @@ -51604,17 +47774,6 @@ height'). - - - - - - - - - - - An elevation which is relatively normal or average @@ -51631,17 +47790,6 @@ height'). - - - - - - - - - - - A pressure which is relatively normal or average @@ -51658,17 +47806,6 @@ height'). - - - - - - - - - - - A radioactivity which is relatively normal or average @@ -51685,17 +47822,6 @@ height'). - - - - - - - - - - - A radiopacity which is relatively normal or average @@ -51713,17 +47839,6 @@ height'). - - - - - - - - - - - A resistance to a stimulus which is relatively normal or average @@ -51742,17 +47857,6 @@ height'). - - - - - - - - - - - A sensitivity to irradiation which is relatively normal or average @@ -51770,17 +47874,6 @@ height'). - - - - - - - - - - - A sensitivity toward an external stimulus which is relatively normal or average @@ -51799,17 +47892,6 @@ height'). - - - - - - - - - - - A size quality which is relatively normal or average @@ -51826,17 +47908,6 @@ height'). - - - - - - - - - - - An area which is relatively normal or average @@ -51853,17 +47924,6 @@ height'). - - - - - - - - - - - A depth quality which is relatively normal or average @@ -51880,17 +47940,6 @@ height'). - - - - - - - - - - - A height which is relatively normal or average @@ -51907,17 +47956,6 @@ height'). - - - - - - - - - - - A length quality which is relatively normal or average @@ -51934,17 +47972,6 @@ height'). - - - - - - - - - - - A diameter which is relatively normal or average @@ -51961,17 +47988,6 @@ height'). - - - - - - - - - - - An anterior-posterior diameter which is relatively normal or average @@ -51988,17 +48004,6 @@ height'). - - - - - - - - - - - A perimeter which is relatively normal or average @@ -52015,17 +48020,6 @@ height'). - - - - - - - - - - - A circumference which is relatively normal or average @@ -52042,17 +48036,6 @@ height'). - - - - - - - - - - - A thickness which is relatively normal or average @@ -52069,17 +48052,6 @@ height'). - - - - - - - - - - - A volume which is relatively normal or average @@ -52097,17 +48069,6 @@ height'). - - - - - - - - - - - A width which is relatively normal or average @@ -52124,17 +48085,6 @@ height'). - - - - - - - - - - - A solubility which is relatively normal or average @@ -52153,17 +48103,6 @@ height'). - - - - - - - - - - - A speed which is relatively normal or average @@ -52180,17 +48119,6 @@ height'). - - - - - - - - - - - A strength which is relatively normal or average @@ -52207,17 +48135,6 @@ height'). - - - - - - - - - - - A fatigability which is relatively normal or average @@ -52235,17 +48152,6 @@ height'). - - - - - - - - - - - A susceptibility toward an external stimulus which is relatively normal or average @@ -52264,17 +48170,6 @@ height'). - - - - - - - - - - - A temperature which is relatively normal or average @@ -52291,17 +48186,6 @@ height'). - - - - - - - - - - - A tendency which is relatively normal or average @@ -52318,17 +48202,6 @@ height'). - - - - - - - - - - - A threshold which is relatively normal or average @@ -52347,17 +48220,6 @@ height'). - - - - - - - - - - - A tolerance to an external stimulus which is relatively normal or average @@ -52375,17 +48237,6 @@ height'). - - - - - - - - - - - A tonicity which is relatively normal or average @@ -52403,17 +48254,6 @@ height'). - - - - - - - - - - - A turgor which is relatively normal or average @@ -52431,17 +48271,6 @@ height'). - - - - - - - - - - - @@ -52462,20 +48291,13 @@ height'). - - - - - - - - - - - - - + + + + + + A variability which is relatively normal or average Luke Slater 2017-12-22T14:16:43Z @@ -52490,20 +48312,13 @@ height'). - - - - - - - - - - - - - + + + + + + A variability which is relatively normal or average Luke Slater 2017-12-22T14:16:43Z @@ -52518,20 +48333,13 @@ height'). - - - - - - - - - - - - - + + + + + + A variability of rate which is relatively normal or average Luke Slater 2017-12-22T14:16:43Z @@ -52546,20 +48354,13 @@ height'). - - - - - - - - - - - - - + + + + + + A variability of size which is relatively normal or average Luke Slater 2017-12-22T14:16:43Z @@ -52574,20 +48375,13 @@ height'). - - - - - - - - - - - - - + + + + + + A variability of temperature which is relatively normal or average Luke Slater 2017-12-22T14:16:43Z @@ -52602,17 +48396,6 @@ height'). - - - - - - - - - - - A velocity which is relatively normal or average @@ -52629,17 +48412,6 @@ height'). - - - - - - - - - - - A virulence which is relatively normal or average @@ -52656,17 +48428,6 @@ height'). - - - - - - - - - - - A viscosity which is relatively normal or average @@ -52683,17 +48444,6 @@ height'). - - - - - - - - - - - A waxiness which is relatively normal or average @@ -52710,17 +48460,6 @@ height'). - - - - - - - - - - - A wetness which is relatively normal or average @@ -52737,17 +48476,6 @@ height'). - - - - - - - - - - - A duration quality of a process which is relatively normal. @@ -52762,17 +48490,6 @@ height'). - - - - - - - - - - - A duration quality of temperature quality of a process which is relatively normal. @@ -52787,17 +48504,6 @@ height'). - - - - - - - - - - - An occurrence which is relatively normal. @@ -52812,17 +48518,6 @@ height'). - - - - - - - - - - - A frequency which is relatively normal. @@ -52838,17 +48533,6 @@ height'). - - - - - - - - - - - A sensitivity of a process which is relatively normal. @@ -52864,17 +48548,6 @@ height'). - - - - - - - - - - - A sensitivity of occurrent to oxygen which is relatively normal. @@ -53035,17 +48708,6 @@ height'). - - - - - - - - - - - A spatial distribution of a process in which the process occupies a smaller length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type. @@ -53067,17 +48729,6 @@ height'). - - - - - - - - - - - A spatial distribution of a process in which the process occupies a greater length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type. diff --git a/reports/pato-edit.obo-obo-report.tsv b/reports/pato-edit.obo-obo-report.tsv new file mode 100644 index 00000000..cd838d11 --- /dev/null +++ b/reports/pato-edit.obo-obo-report.tsv @@ -0,0 +1,104 @@ +Level Rule Name Subject Property Value +ERROR duplicate_definition PATO:0045074 IAO:0000115 A variability which is relatively normal or average +ERROR duplicate_definition PATO:0045075 IAO:0000115 A variability which is relatively normal or average +ERROR duplicate_definition PATO:0001382 IAO:0000115 A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes. +ERROR duplicate_definition PATO:0001384 IAO:0000115 A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes. +ERROR missing_ontology_description pato.owl dc11:description +ERROR duplicate_label PATO:0001174 rdfs:label obsolete urine composition +ERROR duplicate_label PATO:0001175 rdfs:label obsolete urine composition +ERROR duplicate_label PATO:0000195 rdfs:label obsolete startle response +ERROR duplicate_label PATO:0000754 rdfs:label obsolete startle response +ERROR duplicate_label PATO:0001180 rdfs:label obsolete relative response +ERROR duplicate_label PATO:0001182 rdfs:label obsolete relative response +ERROR duplicate_label PATO:0000104 rdfs:label obsolete osmotic response sensitivity +ERROR duplicate_label PATO:0000533 rdfs:label obsolete osmotic response sensitivity +ERROR missing_ontology_license pato.owl dc:license +ERROR missing_ontology_title pato.owl dc11:title +WARN missing_definition BFO:0000050 IAO:0000115 +WARN missing_definition IAO:0000115 IAO:0000115 +WARN missing_definition IAO:0100001 IAO:0000115 +WARN missing_definition PATO:0000068 IAO:0000115 +WARN missing_definition PATO:0001492 IAO:0000115 +WARN missing_definition PATO:0001493 IAO:0000115 +WARN missing_definition PATO:0001494 IAO:0000115 +WARN missing_definition PATO:0001760 IAO:0000115 +WARN missing_definition PATO:0001761 IAO:0000115 +WARN missing_definition PATO:0001762 IAO:0000115 +WARN missing_definition PATO:0001763 IAO:0000115 +WARN missing_definition PATO:0001767 IAO:0000115 +WARN missing_definition PATO:0002016 IAO:0000115 +WARN missing_definition PATO:0002017 IAO:0000115 +WARN missing_definition PATO:0002018 IAO:0000115 +WARN missing_definition PATO:0002062 IAO:0000115 +WARN missing_definition PATO:0002142 IAO:0000115 +WARN missing_definition PATO:0002143 IAO:0000115 +WARN missing_definition PATO:0002267 IAO:0000115 +WARN missing_definition PATO:0002290 IAO:0000115 +WARN missing_definition PATO:0002321 IAO:0000115 +WARN missing_definition PATO:0002322 IAO:0000115 +WARN missing_definition RO:0002604 IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#correlates_with IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#has_dividend_entity IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#has_dividend_quality IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#has_divisor_entity IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#has_divisor_quality IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#has_ratio_quality IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#has_relative_magnitude IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#is_magnitude_of IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#is_measurement_of IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#is_unit_of IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#realized_by IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#singly_occurring_form_of IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#towards IAO:0000115 +WARN missing_definition oboInOwl:SubsetProperty IAO:0000115 +WARN missing_definition oboInOwl:consider IAO:0000115 +WARN missing_definition oboInOwl:hasAlternativeId IAO:0000115 +WARN missing_definition oboInOwl:hasBroadSynonym IAO:0000115 +WARN missing_definition oboInOwl:hasDbXref IAO:0000115 +WARN missing_definition oboInOwl:hasExactSynonym IAO:0000115 +WARN missing_definition oboInOwl:hasNarrowSynonym IAO:0000115 +WARN missing_definition oboInOwl:hasOBOFormatVersion IAO:0000115 +WARN missing_definition oboInOwl:hasOBONamespace IAO:0000115 +WARN missing_definition oboInOwl:hasRelatedSynonym IAO:0000115 +WARN missing_definition oboInOwl:inSubset IAO:0000115 +WARN missing_definition oboInOwl:shorthand IAO:0000115 +INFO lowercase_definition PATO:0002401 IAO:0000115 characterised by an unidentifiable pattern. +INFO lowercase_definition PATO:0015026 IAO:0000115 quality, state, or degree of being stable. +INFO lowercase_definition http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to IAO:0000115 q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. +INFO lowercase_definition http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to IAO:0000115 q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. +INFO lowercase_definition http://purl.obolibrary.org/obo/pato#directly_associated_with IAO:0000115 q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear. +INFO lowercase_definition http://purl.obolibrary.org/obo/pato#has_cross_section IAO:0000115 s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2. +INFO lowercase_definition http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to IAO:0000115 q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. +INFO lowercase_definition http://purl.obolibrary.org/obo/pato#inversely_associated_with IAO:0000115 q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear. +INFO lowercase_definition http://purl.obolibrary.org/obo/pato#reciprocal_of IAO:0000115 q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e. +INFO lowercase_definition http://purl.obolibrary.org/obo/pato#similar_in_magnitude_relative_to IAO:0000115 q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. +INFO missing_superclass PATO:0000001 rdfs:subClassOf +INFO missing_superclass PATO:0001304 rdfs:subClassOf +INFO missing_superclass PATO:0001307 rdfs:subClassOf +INFO missing_superclass PATO:0001308 rdfs:subClassOf +INFO missing_superclass PATO:0001583 rdfs:subClassOf +INFO missing_superclass PATO:0001584 rdfs:subClassOf +INFO missing_superclass PATO:0001587 rdfs:subClassOf +INFO missing_superclass PATO:0001588 rdfs:subClassOf +INFO missing_superclass PATO:0001612 rdfs:subClassOf +INFO missing_superclass PATO:0001613 rdfs:subClassOf +INFO missing_superclass PATO:0001957 rdfs:subClassOf +INFO missing_superclass PATO:0001958 rdfs:subClassOf +INFO missing_superclass PATO:0010004 rdfs:subClassOf +INFO missing_superclass PATO:0015010 rdfs:subClassOf +INFO missing_superclass PATO:0015011 rdfs:subClassOf +INFO missing_superclass PATO:0015014 rdfs:subClassOf +INFO missing_superclass PATO:0015015 rdfs:subClassOf +INFO missing_superclass PATO:0015022 rdfs:subClassOf +INFO missing_superclass PATO:0015023 rdfs:subClassOf +INFO missing_superclass PATO:0015024 rdfs:subClassOf +INFO missing_superclass PATO:0015025 rdfs:subClassOf +INFO missing_superclass PATO:0015027 rdfs:subClassOf +INFO missing_superclass PATO:0015028 rdfs:subClassOf +INFO missing_superclass PATO:0045074 rdfs:subClassOf +INFO missing_superclass PATO:0045075 rdfs:subClassOf +INFO missing_superclass PATO:0045076 rdfs:subClassOf +INFO missing_superclass PATO:0045077 rdfs:subClassOf +INFO missing_superclass PATO:0045078 rdfs:subClassOf +INFO missing_superclass PATO:0055001 rdfs:subClassOf +INFO missing_superclass PATO:0055002 rdfs:subClassOf diff --git a/src/ontology/Makefile b/src/ontology/Makefile index 58cb4deb..88f5c179 100644 --- a/src/ontology/Makefile +++ b/src/ontology/Makefile @@ -1,113 +1,400 @@ -OBO=http://purl.obolibrary.org/obo -USECAT= --catalog-xml catalog-v001.xml +# ---------------------------------------- +# Makefile for pato +# Generated using ontology-starter-kit +# ODK Version: v1.2.18 +# ---------------------------------------- +# + +# ---------------------------------------- +# Standard Constants +# ---------------------------------------- +# these can be overwritten on the command line -all: all_imports release +URIBASE= http://purl.obolibrary.org/obo +ONT= pato +ONTBASE= $(URIBASE)/$(ONT) +EDIT_FORMAT= obo +SRC = $(ONT)-edit.$(EDIT_FORMAT) +CATALOG= catalog-v001.xml +ROBOT= robot --catalog $(CATALOG) +RELEASEDIR= ../.. +PATTERNDIR= ../patterns +REPORTDIR= reports +TMPDIR= tmp +SPARQLDIR = ../sparql +REPORT_FAIL_ON = none +OBO_FORMAT_OPTIONS = +SPARQL_VALIDATION_CHECKS = equivalent-classes trailing-whitespace owldef-self-reference xref-syntax nolabels +SPARQL_EXPORTS = basic-report class-count-by-prefix edges xrefs obsoletes synonyms +ODK_VERSION = v1.2.18 -ARTEFACTS = pato.obo pato.owl pato.json pato_ext.owl pato_ext.json pato-base.obo pato-base.owl pato-base.json -release: $(ARTEFACTS) copy-release +TODAY ?= $(shell date +%Y-%m-%d) +OBODATE ?= $(shell date +'%d:%m:%Y %H:%M') -TARGETS = $(ARTEFACTS) imports -copy-release: - cp -pr $(TARGETS) ../.. -test: all +FORMATS = $(sort owl obo json owl) +FORMATS_INCL_TSV = $(sort $(FORMAT) tsv) +RELEASE_ARTEFACTS = $(sort base simple full base full) # ---------------------------------------- -# BUILD +# Top-level targets # ---------------------------------------- -# This is a standard OORT build -# We add a custom step to unfold the import closure in the obo version, because obo does not handle imports well +.PHONY: .FORCE +all: odkversion all_imports all_main all_subsets sparql_test all_reports all_assets +test: odkversion sparql_test all_reports + $(ROBOT) reason --input $(SRC) --reasoner ELK --equivalent-classes-allowed all --output test.owl && rm test.owl && echo "Success" + +odkversion: + echo "ODK Makefile version: $(ODK_VERSION) (this is the version of the ODK with which this Makefile was generated, not the version of the ODK you are running)" &&\ + echo "ROBOT version (ODK): " && $(ROBOT) --version + +$TMPDIR: + mkdir -p $@ + +## -- main targets -- +## +## By default this is the cross-product of {ont, ont-base} x FORMATS + +MAIN_PRODUCTS = $(sort $(foreach r,$(RELEASE_ARTEFACTS), $(ONT)-$(r)) $(ONT)) +MAIN_GZIPPED = +MAIN_FILES = $(foreach n,$(MAIN_PRODUCTS), $(foreach f,$(FORMATS), $(n).$(f))) $(MAIN_GZIPPED) + +all_main: $(MAIN_FILES) + +## -- import targets -- +## +## By default this is the cross-product of IMPORT_MODULES x FORMATS + + +IMPORTS = ro chebi go pco uberon + +IMPORT_ROOTS = $(patsubst %, imports/%_import, $(IMPORTS)) +IMPORT_FILES = $(foreach n,$(IMPORT_ROOTS), $(foreach f,$(FORMATS), $(n).$(f))) +IMPORT_OWL_FILES = $(foreach n,$(IMPORT_ROOTS), $(n).owl) + +all_imports: $(IMPORT_FILES) + +all_imports_owl: $(foreach n,$(IMPORT_ROOTS), $(n).owl) + +all_imports_obo: $(foreach n,$(IMPORT_ROOTS), $(n).obo) + +all_imports_json: $(foreach n,$(IMPORT_ROOTS), $(n).json) + + +## -- subset targets -- +## +## By default this is the cross-product of SUBSETS x FORMATS +## Note we also include TSV as a format + + +SUBSETS = + +SUBSET_ROOTS = $(patsubst %, subsets/%, $(SUBSETS)) +SUBSET_FILES = $(foreach n,$(SUBSET_ROOTS), $(foreach f,$(FORMATS_INCL_TSV), $(n).$(f))) + +all_subsets: $(SUBSET_FILES) + +## -- dosdp pattern targets -- +## + + +PATTERNS = + +PATTERN_ROOTS = $(patsubst %, $(PATTERNDIR)/%, $(PATTERNS)) +PATTERN_FILES = $(foreach n,$(PATTERN_ROOTS), $(n).owl) + +all_patterns: $(PATTERN_FILES) + +## -- dosdp pattern targets -- +## + +OBO_REPORT = $(SRC)-obo-report +REPORTS = $(OBO_REPORT) +REPORT_FILES = $(patsubst %, $(REPORTDIR)/%.tsv, $(REPORTS)) + +all_reports: all_reports_onestep $(REPORT_FILES) + +## -- all files/assets -- + +ASSETS = \ + $(IMPORT_FILES) \ + $(MAIN_FILES) \ + $(REPORT_FILES) \ + $(SUBSET_FILES) + +all_assets: $(ASSETS) + +show_assets: + echo $(ASSETS) + du -sh $(ASSETS) -# TODO: allow-equivalent-pairs is there for the CL:cell vs GO:cell -pato.owl: pato-edit.obo - robot relax -i $< reason -r elk reduce annotate -V $(OBO)/pato/releases/`date +%Y-%m-%d`/pato.owl -o $@ -pato.json: pato.owl - robot convert -i $< -o $@ -pato_ext.json: pato_ext.owl - robot convert -i $< -o $@ -pato.obo: pato.owl - robot convert -i $< -o $@.tmp.obo && grep -v ^owl-axioms $@.tmp.obo > $@ -pato-basic.owl: pato.owl - owltools $< --remove-axioms -t DisjointClasses --set-ontology-id $(OBO)/pato/$@ -o $@ -pato-basic.obo: pato-basic.owl - robot convert -i $< -o $@.tmp && grep -v ^owl-axioms $@.tmp > $@ # ---------------------------------------- -# Base +# Release Management # ---------------------------------------- -pato_ext-no-imports.owl: pato_ext.owl - owltools $(USECAT) $< --remove-imports-declarations -o $@ -pato-base.owl: pato-edit.obo pato_ext-no-imports.owl - owltools $^ --merge-support-ontologies --set-ontology-id $(OBO)/pato/$@ -o $@ -pato-base.json: pato-base.owl - robot convert -i $< -o $@ -pato-base.obo: pato-base.owl - robot convert -i $< -o $@ -#test_ext: -# robot reason -r elk -i pato_ext.owl +KEEPRELATIONS=keeprelations.txt +ONTOLOGYTERMS=ontologyterms.txt +SIMPLESEED=simple_seed.txt + +# This should be executed by the release manager whenever time comes to make a release. +# It will ensure that all assets/files are fresh, and will copy to release folder +prepare_release: $(ASSETS) $(PATTERN_RELEASE_FILES) + rsync -R $(ASSETS) $(RELEASEDIR) &&\ + echo "Release files are now in $(RELEASEDIR) - now you should commit, push and make a release on your git hosting site such as GitHub or GitLab" + +prepare_initial_release: prepare_release + cd $(RELEASEDIR) && git add $(ASSETS) # ---------------------------------------- -# Regenerate imports +# Export formats # ---------------------------------------- -# Uses OWLAPI Module Extraction code -# Type 'make imports/X_import.owl' whenever you wish to refresh the import for an ontology X. This is when: -# -# 1. X has changed and we want to include these changes -# 2. We have added onr or more new IRI from X into pato-edit.owl -# 3. We have removed references to one or more IRIs in X from pato-edit.owl + +$(ONT)-base.obo: $(ONT)-base.owl + $(ROBOT) convert --input $< --check false -f obo $(OBO_FORMAT_OPTIONS) -o $@.tmp.obo && grep -v ^owl-axioms $@.tmp.obo > $@ && rm $@.tmp.obo +$(ONT)-base.json: $(ONT)-base.owl + $(ROBOT) annotate --input $< --ontology-iri $(ONTBASE)/$@ --version-iri $(ONTBASE)/releases/$(TODAY)/$@ \ + convert --check false -f json -o $@.tmp.json && mv $@.tmp.json $@ +$(ONT)-simple.obo: $(ONT)-simple.owl + $(ROBOT) convert --input $< --check false -f obo $(OBO_FORMAT_OPTIONS) -o $@.tmp.obo && grep -v ^owl-axioms $@.tmp.obo > $@ && rm $@.tmp.obo +$(ONT)-simple.json: $(ONT)-simple.owl + $(ROBOT) annotate --input $< --ontology-iri $(ONTBASE)/$@ --version-iri $(ONTBASE)/releases/$(TODAY)/$@ \ + convert --check false -f json -o $@.tmp.json && mv $@.tmp.json $@ +$(ONT)-full.obo: $(ONT)-full.owl + $(ROBOT) convert --input $< --check false -f obo $(OBO_FORMAT_OPTIONS) -o $@.tmp.obo && grep -v ^owl-axioms $@.tmp.obo > $@ && rm $@.tmp.obo +$(ONT)-full.json: $(ONT)-full.owl + $(ROBOT) annotate --input $< --ontology-iri $(ONTBASE)/$@ --version-iri $(ONTBASE)/releases/$(TODAY)/$@ \ + convert --check false -f json -o $@.tmp.json && mv $@.tmp.json $@ +# Main release artefacts +$(ONT).owl: $(ONT)-simple.owl + $(ROBOT) annotate --input $< --ontology-iri $(URIBASE)/$@ --version-iri $(ONTBASE)/releases/$(TODAY)/$@ \ + convert -o $@.tmp.owl && mv $@.tmp.owl $@ + +$(ONT).obo: $(ONT).owl + $(ROBOT) convert --input $< --check false -f obo $(OBO_FORMAT_OPTIONS) -o $@.tmp.obo && grep -v ^owl-axioms $@.tmp.obo > $@ && rm $@.tmp.obo +$(ONT).json: $(ONT)-simple.owl + $(ROBOT) annotate --input $< --ontology-iri $(URIBASE)/$@ --version-iri $(ONTBASE)/releases/$(TODAY) \ + convert --check false -f json -o $@.tmp.json && mv $@.tmp.json $@ +# ---------------------------------------- +# Initiating Step: Reason over source +# ---------------------------------------- + +ANNOTATE_VERSION_IRI = annotate -V $(ONTBASE)/releases/$(TODAY)/$@.owl + +# by default we use ELK to perform a reason-relax-reduce chain +# after that we annotate the ontology with the release versionInfo + +OTHER_SRC = + + +$(ONTOLOGYTERMS): $(SRC) $(OTHER_SRC) + $(ROBOT) query --use-graphs true -f csv -i $< --query ../sparql/pato_terms.sparql $@ + + + + + + + + + + + +# base: OTHER sources of interest, such as definitions owl +$(ONT)-base.owl: $(SRC) $(OTHER_SRC) + $(ROBOT) remove --input $< --select imports --trim false \ + merge $(patsubst %, -i %, $(OTHER_SRC)) \ + annotate --ontology-iri $(ONTBASE)/$@ --version-iri $(ONTBASE)/releases/$(TODAY)/$@ --output $@.tmp.owl && mv $@.tmp.owl $@ + +# Full: The full artefacts with imports merged, reasoned +$(ONT)-full.owl: $(SRC) $(OTHER_SRC) + $(ROBOT) merge --input $< \ + reason --reasoner ELK --equivalent-classes-allowed all \ + relax \ + reduce -r ELK \ + annotate --ontology-iri $(ONTBASE)/$@ --version-iri $(ONTBASE)/releases/$(TODAY)/$@ --output $@.tmp.owl && mv $@.tmp.owl $@ + +# foo-simple: (edit->reason,relax,reduce,drop imports, drop every axiom which contains an entity outside the "namespaces of interest") +# drop every axiom: filter --term-file keep_terms.txt --trim true +# remove --select imports --trim false \ + +SRCMERGED=merged-$(SRC) + +$(SRCMERGED): $(SRC) + $(ROBOT) remove --input $< --select imports --trim true \ + merge $(patsubst %, -i %, $(OTHER_SRC)) -o $@ + +$(SIMPLESEED): $(SRCMERGED) $(ONTOLOGYTERMS) + $(ROBOT) query --use-graphs false -f csv -i $< --query ../sparql/simple-seed.sparql $@.tmp &&\ + cat $@.tmp $(ONTOLOGYTERMS) | sort | uniq > $@ &&\ + echo "http://www.geneontology.org/formats/oboInOwl#SubsetProperty" >> $@ &&\ + echo "http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty" >> $@ + +$(ONT)-simple.owl: $(SRC) $(OTHER_SRC) $(SIMPLESEED) + $(ROBOT) merge --input $< $(patsubst %, -i %, $(OTHER_SRC)) \ + reason --reasoner ELK --equivalent-classes-allowed all \ + relax \ + remove --axioms equivalent \ + relax \ + filter --term-file $(SIMPLESEED) --select "annotations ontology anonymous self" --trim true --signature true \ + reduce -r ELK \ + annotate --ontology-iri $(ONTBASE)/$@ --version-iri $(ONTBASE)/releases/$(TODAY)/$@ --output $@.tmp.owl && mv $@.tmp.owl $@ +# ---------------------------------------- +# Import modules +# ---------------------------------------- +# Most ontologies are modularly constructed using portions of other ontologies +# These live in the imports/ folder + +# seed.txt contains all referenced entities + + +seed.txt: $(SRC) + @if [ $(IMP) = true ]; then $(ROBOT) query --use-graphs true -f csv -i $< --query ../sparql/terms.sparql $@; fi + + +# Generate terms.txt for each import. (Assume OBO-style Possibly hacky step?) +# Should be able to drop this if robot can just take a big messy list of terms as input. + +imports/%_terms_combined.txt: seed.txt imports/%_terms.txt + @if [ $(IMP) = true ]; then cat $^ | grep -v ^# | sort | uniq > $@; fi + +# -- Generate Import Modules -- # -# You should NOT edit these files directly, changes will be overwritten. +# This pattern uses ROBOT to generate an import module +imports/%_import.owl: mirror/%.owl imports/%_terms_combined.txt + @if [ $(IMP) = true ]; then $(ROBOT) extract -i $< -T imports/$*_terms_combined.txt --force true --method BOT \ + query --update ../sparql/inject-subset-declaration.ru \ + annotate --ontology-iri $(ONTBASE)/$@ --version-iri $(ONTBASE)/releases/$(TODAY)/$@ --output $@.tmp.owl && mv $@.tmp.owl $@; fi +.PRECIOUS: imports/%_import.owl + +# convert imports to obo. +# this can be useful for spot-checks and diffs. +# we set strict mode to false by default. For discussion see https://github.com/owlcs/owlapi/issues/752 +imports/%_import.obo: imports/%_import.owl + @if [ $(IMP) = true ]; then $(ROBOT) convert --check false -i $< -f obo -o $@.tmp.obo && mv $@.tmp.obo $@; fi +imports/%_import.json: imports/%_import.owl + @if [ $(IMP) = true ]; then $(ROBOT) convert --check false -i $< -f json -o $@.tmp.json && mv $@.tmp.json $@; fi +# ---------------------------------------- +# Mirroring upstream ontologies +# ---------------------------------------- # -# If you want to add something to these, edit pato-edit.owl and add an axiom with a IRI from X. You don't need to add any information about X. -# Base URI for local subset imports -PATO_IMPORTS_BASE_URI = $(OBO)/pato +IMP=true # Global parameter to bypass import generation +MIR=true # Global parameter to bypass mirror generation -# Ontology dependencies -# Add back 'uberon' if PATO references Uberon terms in the future. Currently it causes a ROBOT error -# to perform an `extract` resulting in an empty ontology. -IMPORTS = go pco ro -# Make this target to regenerate ALL -all_imports: $(patsubst %, imports/%_import.owl,$(IMPORTS)) $(patsubst %, imports/%_import.obo,$(IMPORTS)) -KEEPRELS = http://purl.obolibrary.org/obo/BFO_0000050 http://purl.obolibrary.org/obo/BFO_0000051 http://purl.obolibrary.org/obo/RO_0002202 http://purl.obolibrary.org/obo/RO_0002495 +## ONTOLOGY: ro +## Copy of ro is re-downloaded whenever source changes +mirror/ro.trigger: $(SRC) -# Create an import module using the OWLAPI module extraction code via OWLTools. -# We use the standard catalog, but rewrite the import to X to be a local mirror of ALL of X. -# After extraction, we further reduce the ontology by creating a "mingraph" (removes all annotations except label) and by -imports/%_import.owl: mirror/%.owl imports/terms.txt - robot extract -i $< -T imports/terms.txt --method BOT -O $(PATO_IMPORTS_BASE_URI)/$@ -o $@ +mirror/ro.owl: mirror/ro.trigger + @if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(ROBOT) convert -I $(URIBASE)/ro.owl -o $@.tmp.owl && mv $@.tmp.owl $@; fi -imports/%_import.obo: imports/%_import.owl - owltools $(USECAT) $< -o -f obo $@ - -# clone remote ontology locally, perfoming some excision of relations and annotations -mirror/%.owl: - owltools $(OBO)/$*.owl --remove-annotation-assertions -l --remove-dangling-annotations --make-subset-by-properties -f $(KEEPRELS) -o $@ -mirror/ro.owl: - owltools $(OBO)/ro.owl --remove-annotation-assertions -l -o $@ -mirror/uberon.owl: - owltools $(OBO)/uberon/basic.owl --remove-annotation-assertions -l -s -d --remove-axiom-annotations --remove-dangling-annotations --make-subset-by-properties -f $(KEEPRELS) --set-ontology-id $(OBO)/uberon.owl -o $@ -.PRECIOUS: mirror/uberon.owl -mirror/pr.owl: mirror/pr.obo - owltools $< --remove-dangling --set-ontology-id $(OBO)/pr.owl -o $@ .PRECIOUS: mirror/%.owl + +## ONTOLOGY: chebi +## Copy of chebi is re-downloaded whenever source changes +mirror/chebi.trigger: $(SRC) + +mirror/chebi.owl: mirror/chebi.trigger + @if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(ROBOT) convert -I $(URIBASE)/chebi.owl -o $@.tmp.owl && mv $@.tmp.owl $@; fi + +.PRECIOUS: mirror/%.owl + + +## ONTOLOGY: go +## Copy of go is re-downloaded whenever source changes +mirror/go.trigger: $(SRC) + +mirror/go.owl: mirror/go.trigger + @if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(ROBOT) convert -I $(URIBASE)/go.owl -o $@.tmp.owl && mv $@.tmp.owl $@; fi + +.PRECIOUS: mirror/%.owl + + +## ONTOLOGY: pco +## Copy of pco is re-downloaded whenever source changes +mirror/pco.trigger: $(SRC) + +mirror/pco.owl: mirror/pco.trigger + @if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(ROBOT) convert -I $(URIBASE)/pco.owl -o $@.tmp.owl && mv $@.tmp.owl $@; fi + +.PRECIOUS: mirror/%.owl + + +## ONTOLOGY: uberon +## Copy of uberon is re-downloaded whenever source changes +mirror/uberon.trigger: $(SRC) + +mirror/uberon.owl: mirror/uberon.trigger + @if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(ROBOT) convert -I $(URIBASE)/uberon.owl -o $@.tmp.owl && mv $@.tmp.owl $@; fi + +.PRECIOUS: mirror/%.owl + + + +# ---------------------------------------- +# Subsets +# ---------------------------------------- +subsets/%.tsv: subsets/%.owl + $(ROBOT) query -f tsv -i $< -s ../sparql/labels.sparql $@ +subsets/%.owl: $(ONT).owl + owltools --use-catalog $< --extract-ontology-subset --fill-gaps --subset $* -o $@.tmp.owl && mv $@.tmp.owl $@ + + +# ---------------------------------------- +# Release +# ---------------------------------------- +# copy from staging area (this directory) to top-level +release: $(ONT).owl $(ONT).obo + cp $^ $(RELEASEDIR) && cp imports/* $(RELEASEDIR)/imports + # ---------------------------------------- -# Reports +# Sparql queries: Q/C # ---------------------------------------- -REPORTS=edges basicReport -all_reports: $(patsubst %, reports/pato-%.csv, $(REPORTS)) -reports/pato-%.csv: pato.owl sparql/%.sparql - arq --data $< --query sparql/$*.sparql --results csv > $@.tmp && mv $@.tmp $@ +# these live in the ../sparql directory, and have suffix -violation.sparql +# adding the name here will make the violation check live. +# NOTE: these will soon be phased out and replaced by robot-report + +# run all violation checks +SPARQL_VALIDATION_QUERIES = $(foreach V,$(SPARQL_VALIDATION_CHECKS),$(SPARQLDIR)/$V-violation.sparql) +sparql_test: $(SRC) + $(ROBOT) verify --catalog catalog-v001.xml -i $< --queries $(SPARQL_VALIDATION_QUERIES) -O reports/ + +# ---------------------------------------- +# ROBOT report +# ---------------------------------------- +reports/%-obo-report.tsv: % + $(ROBOT) report -i $< --fail-on $(REPORT_FAIL_ON) -o $@ + +# ---------------------------------------- +# Sparql queries: Exports +# ---------------------------------------- + +SPARQL_EXPORTS_ARGS = $(foreach V,$(SPARQL_EXPORTS),-s $(SPARQLDIR)/$V.sparql reports/$V.tsv) +# This combines all into one single command +all_reports_onestep: $(SRC) + $(ROBOT) query -f tsv -i $< $(SPARQL_EXPORTS_ARGS) + + +# ---------------------------------------- +# Docker (experimental) +# ---------------------------------------- +IM=build-$(ONT) +build-docker: + docker build -t $(ONT) . + + + + + + -## EXPERIMENTAL -value_no_ldef.tsv: pato-edit.obo - blip-findall -i $< "entity_partition(X,value_slim),\+genus(X,_)" -select X -label > $@ +include pato.Makefile \ No newline at end of file diff --git a/src/ontology/imports/chebi_import.json b/src/ontology/imports/chebi_import.json new file mode 100644 index 00000000..6fdb3b06 --- /dev/null +++ b/src/ontology/imports/chebi_import.json @@ -0,0 +1,39 @@ +{ + "graphs" : [ { + "nodes" : [ { + "id" : "http://purl.obolibrary.org/obo/CHEBI_46662", + "type" : "CLASS", + "lbl" : "mineral" + }, { + "id" : "http://purl.obolibrary.org/obo/CHEBI_24431", + "type" : "CLASS", + "lbl" : "chemical entity" + }, { + "id" : "http://purl.obolibrary.org/obo/CHEBI_59999", + "type" : "CLASS", + "lbl" : "chemical substance" + } ], + "edges" : [ { + "sub" : "http://purl.obolibrary.org/obo/CHEBI_59999", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CHEBI_24431" + }, { + "sub" : "http://purl.obolibrary.org/obo/CHEBI_46662", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CHEBI_59999" + } ], + "id" : "file:/imports/chebi_import.owl", + "meta" : { + "subsets" : [ ], + "xrefs" : [ ], + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://purl.obolibrary.org/obo/chebi/131/chebi.owl" + } ] + }, + "equivalentNodesSets" : [ ], + "logicalDefinitionAxioms" : [ ], + "domainRangeAxioms" : [ ], + "propertyChainAxioms" : [ ] + } ] +} \ No newline at end of file diff --git a/src/ontology/imports/chebi_import.obo b/src/ontology/imports/chebi_import.obo new file mode 100644 index 00000000..bc91c66b --- /dev/null +++ b/src/ontology/imports/chebi_import.obo @@ -0,0 +1,18 @@ +format-version: 1.2 +ontology: file:/imports/chebi_import.owl +property_value: http://purl.org/dc/elements/1.1/source http://purl.obolibrary.org/obo/chebi/131/chebi.owl + +[Term] +id: CHEBI:24431 +name: chemical entity + +[Term] +id: CHEBI:46662 +name: mineral +is_a: CHEBI:59999 ! chemical substance + +[Term] +id: CHEBI:59999 +name: chemical substance +is_a: CHEBI:24431 ! chemical entity + diff --git a/src/ontology/imports/go_import.json b/src/ontology/imports/go_import.json new file mode 100644 index 00000000..83b1344d --- /dev/null +++ b/src/ontology/imports/go_import.json @@ -0,0 +1,120 @@ +{ + "graphs" : [ { + "nodes" : [ { + "id" : "http://purl.obolibrary.org/obo/GO_0120025", + "type" : "CLASS", + "lbl" : "plasma membrane bounded cell projection" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043227", + "type" : "CLASS", + "lbl" : "membrane-bounded organelle" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005623", + "type" : "CLASS", + "lbl" : "cell" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005634", + "type" : "CLASS", + "lbl" : "nucleus" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043226", + "type" : "CLASS", + "lbl" : "organelle" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0042995", + "type" : "CLASS", + "lbl" : "cell projection" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043229", + "type" : "CLASS", + "lbl" : "intracellular organelle" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0044424", + "type" : "CLASS", + "lbl" : "intracellular part" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005575", + "type" : "CLASS", + "lbl" : "cellular_component" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005929", + "type" : "CLASS", + "lbl" : "cilium" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0044464", + "type" : "CLASS", + "lbl" : "cell part" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043231", + "type" : "CLASS", + "lbl" : "intracellular membrane-bounded organelle" + } ], + "edges" : [ { + "sub" : "http://purl.obolibrary.org/obo/GO_0043231", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043229" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043231", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043227" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005634", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043231" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005623", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0005575" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043226", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0005575" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043229", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044424" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0120025", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0042995" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043229", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043226" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044424", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044464" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042995", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044464" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044464", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0005575" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043227", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043226" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005929", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0120025" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005929", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043226" + } ], + "id" : "http://purl.obolibrary.org/obo/pato/imports/go_import.owl", + "meta" : { + "subsets" : [ ], + "xrefs" : [ ], + "basicPropertyValues" : [ ] + }, + "equivalentNodesSets" : [ ], + "logicalDefinitionAxioms" : [ ], + "domainRangeAxioms" : [ ], + "propertyChainAxioms" : [ ] + } ] +} \ No newline at end of file diff --git a/src/ontology/imports/pco_import.json b/src/ontology/imports/pco_import.json new file mode 100644 index 00000000..542823c2 --- /dev/null +++ b/src/ontology/imports/pco_import.json @@ -0,0 +1,144 @@ +{ + "graphs" : [ { + "nodes" : [ { + "id" : "http://purl.obolibrary.org/obo/PCO_0000031", + "type" : "CLASS", + "lbl" : "organismal entity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000004", + "type" : "CLASS", + "lbl" : "independent continuant" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000000", + "type" : "CLASS", + "lbl" : "collection of organisms" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000027", + "type" : "CLASS", + "lbl" : "object aggregate" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000001", + "type" : "CLASS", + "lbl" : "population of organisms" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001241", + "type" : "CLASS", + "lbl" : "physical object quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002003", + "type" : "CLASS", + "lbl" : "population quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000001", + "type" : "CLASS", + "lbl" : "quality" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0001010", + "type" : "CLASS", + "lbl" : "organism or virus or viroid" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000001", + "type" : "CLASS", + "lbl" : "entity" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000003", + "type" : "CLASS", + "lbl" : "quality of a population" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000002", + "type" : "CLASS", + "lbl" : "continuant" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000003", + "type" : "CLASS", + "lbl" : "occurrent" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000040", + "type" : "CLASS", + "lbl" : "material entity" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000018", + "type" : "CLASS", + "lbl" : "single-species collection of organisms" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000020", + "type" : "CLASS", + "lbl" : "specifically dependent continuant" + } ], + "edges" : [ { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PCO_0000000", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PCO_0000031" + }, { + "sub" : "http://purl.obolibrary.org/obo/PCO_0000003", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002003" + }, { + "sub" : "http://purl.obolibrary.org/obo/PCO_0000003", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { + "sub" : "http://purl.obolibrary.org/obo/PCO_0000018", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PCO_0000000" + }, { + 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"http://purl.obolibrary.org/obo/BFO_0000027", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000040" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000040", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" + }, { + "sub" : "http://purl.obolibrary.org/obo/PCO_0000001", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PCO_0000018" + } ], + "id" : "urn:absolute:/imports/pco_import.owl", + "meta" : { + "subsets" : [ ], + "xrefs" : [ ], + "basicPropertyValues" : [ ] + }, + "equivalentNodesSets" : [ ], + "logicalDefinitionAxioms" : [ ], + "domainRangeAxioms" : [ ], + "propertyChainAxioms" : [ ] + } ] +} \ No newline at end of file diff --git a/src/ontology/imports/ro_import.json b/src/ontology/imports/ro_import.json new file mode 100644 index 00000000..fc2dd078 --- /dev/null +++ b/src/ontology/imports/ro_import.json @@ -0,0 +1,1345 @@ +{ + "graphs" : [ { + "nodes" : [ { + "id" : "http://purl.obolibrary.org/obo/CARO_0000006", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "material anatomical entity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0003674", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "molecular process" + } ] + }, + "type" : "CLASS", + "lbl" : "molecular_function" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000015", + "meta" : { + "definition" : { + "val" : "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005634", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "nucleus" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002090", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "ends_at_start_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "meets" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately precedes" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000052", + "meta" : { + "definition" : { + "val" : "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this red color inheres in this apple" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A dependent inheres in its bearer at all times for which the dependent exists." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this fragility inheres in this vase" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "inheres in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "inheres_in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "inheres in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000056", + "meta" : { + "definition" : { + "val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this input material (or this output material) participates in this process" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this investigator participates in this investigation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "participates_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this blood clot participates in this blood coagulation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "participates in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "participates in" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0044464", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "cell part" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000053", + "meta" : { + "definition" : { + "val" : "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "bearer of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this vase is bearer of this fragility" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "bearer_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this apple is bearer of this red color" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is bearer of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "bearer of" + }, { + "id" : "http://purl.obolibrary.org/obo/CL_0000000", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/cl.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "cell" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0008150", + "type" : "CLASS", + "lbl" : "biological_process" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000050", + "meta" : { + "definition" : { + "val" : "a core relation that holds between a part and its whole", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my brain is part of my body (continuant parthood, two material entities)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "is part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this day is part of this year (occurrent parthood)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." + } ] + }, + "type" : "PROPERTY", + "lbl" : "part of" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0030000", + "type" : "CLASS", + "lbl" : "biological entity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016301", + "type" : "CLASS", + "lbl" : "kinase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016740", + "type" : "CLASS", + "lbl" : "transferase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000051", + "meta" : { + "definition" : { + "val" : "a core relation that holds between a whole and its part", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has part" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my body has part my brain (continuant parthood, two material entities)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_part" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this year has part this day (occurrent parthood)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has part" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000014", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "cell part (CARO)" + } ] + }, + "type" : "CLASS", + "lbl" : "cell part" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000004", + "meta" : { + "definition" : { + "val" : "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "independent continuant" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002222", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" + } ] + }, + "type" : "PROPERTY", + "lbl" : "temporally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002086", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + } ] + }, + "type" : "PROPERTY", + "lbl" : "ends after" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002087", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "starts_at_end_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately preceded by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000057", + "meta" : { + "definition" : { + "val" : "a relation between a process and a continuant, in which the continuant is somehow involved in the process", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:has_participant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this blood coagulation has participant this blood clot" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has participant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_participant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this process has participant this input material (or this output material)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this investigation has participant this investigator" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has participant" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000066", + "meta" : { + "definition" : { + "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "occurs_in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "occurs in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" + } ] + }, + "type" : "PROPERTY", + "lbl" : "occurs in" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0001010", + "type" : "CLASS", + "lbl" : "organism or virus or viroid" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "meta" : { + "definition" : { + "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "site of" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + } ] + }, + "type" : "PROPERTY", + "lbl" : "contains process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016772", + "type" : "CLASS", + "lbl" : "transferase activity, transferring phosphorus-containing groups" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000002", + "meta" : { + "definition" : { + "val" : "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "continuant" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000003", + "meta" : { + "definition" : { + "val" : "An entity that has temporal parts and that happens, unfolds or develops through time.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "occurrent" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000062", + "meta" : { + "definition" : { + "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is preceded by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "preceded_by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "preceded by" + } ] + }, + "type" : "PROPERTY", + "lbl" : "preceded by" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000040", + "meta" : { + "definition" : { + "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "material entity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000063", + "meta" : { + "definition" : { + "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "precedes" + } ] + }, + "type" : "PROPERTY", + "lbl" : "precedes" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0003824", + "type" : "CLASS", + "lbl" : "catalytic activity" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000000", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "anatomical entity" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000003", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "connected anatomical structure" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000020", + "meta" : { + "definition" : { + "val" : "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "specifically dependent continuant" + } ], + "edges" : [ { + "sub" : "http://purl.obolibrary.org/obo/RO_0002327", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002333" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0008150", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000015" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0004034", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002263" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002213", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002336" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0004033", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002264" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002087", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000062" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002352", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/CARO_0000014", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CARO_0000003" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0004032", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002264" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002212", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002335" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044464", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CARO_0000014" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002418", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002501" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002432", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002131" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005634", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044464" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002411", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000063" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002131", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002323" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002429", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002428" + }, { + "sub" : "http://purl.obolibrary.org/obo/CARO_0000003", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CARO_0000006" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000066", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000067" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002501", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002410" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002211", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002334" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002448", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002566" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002431", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002264" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002023", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002630" + }, { + "sub" : "http://purl.obolibrary.org/obo/CARO_0030000", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002405", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002404" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002449", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002448" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002022", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002334" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002578", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0016740", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0003824" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002436", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002434" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002404", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002427" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0016301", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0016772" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0000056", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000057" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002630", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002212" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002331", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002217" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002448", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002436" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002427", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002501" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002180", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002018", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002180" + }, { + "sub" : "http://purl.obolibrary.org/obo/CL_0000000", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CARO_0000003" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002013", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002334" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002212", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0004034", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0004032" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002022", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002578" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002404", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000062" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002334", + "pred" : "subPropertyOf", + 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"chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002584", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002215" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002428", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002211" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002449", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002630", "http://purl.obolibrary.org/obo/RO_0002333" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002432", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000066" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", + 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"chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002314", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002327", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002017" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000063", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000063" ] + } ] + } ] +} \ No newline at end of file diff --git a/src/ontology/imports/uberon_import.json b/src/ontology/imports/uberon_import.json new file mode 100644 index 00000000..9f8a4643 --- /dev/null +++ b/src/ontology/imports/uberon_import.json @@ -0,0 +1,16 @@ +{ + "graphs" : [ { + "nodes" : [ ], + "edges" : [ ], + "id" : "urn:absolute:/imports/uberon_import.owl", + "meta" : { + "subsets" : [ ], + "xrefs" : [ ], + "basicPropertyValues" : [ ] + }, + "equivalentNodesSets" : [ ], + "logicalDefinitionAxioms" : [ ], + "domainRangeAxioms" : [ ], + "propertyChainAxioms" : [ ] + } ] +} \ No newline at end of file diff --git a/src/ontology/imports/uberon_import.obo b/src/ontology/imports/uberon_import.obo new file mode 100644 index 00000000..dbb846fe --- /dev/null +++ b/src/ontology/imports/uberon_import.obo @@ -0,0 +1,3 @@ +format-version: 1.2 +ontology: urn:absolute:/imports/uberon_import.owl + diff --git a/src/ontology/merged-pato-edit.obo b/src/ontology/merged-pato-edit.obo new file mode 100644 index 00000000..a4c7eca5 --- /dev/null +++ b/src/ontology/merged-pato-edit.obo @@ -0,0 +1,21727 @@ +format-version: 1.2 +date: 07:02:2018 10:27 +saved-by: segerdel +auto-generated-by: OBO-Edit 2.3.1 +subsetdef: abnormal_slim "Abnormal/normal slim" +subsetdef: absent_slim "Absent/present slim" +subsetdef: attribute_slim "Attribute slim" +subsetdef: cell_quality "cell_quality" +subsetdef: disposition_slim "Disposition slim" +subsetdef: hpo_slim "Human phenotype slim" +subsetdef: mpath_slim "Pathology slim" +subsetdef: relational_slim "Relational slim: types of quality that require an additional entity in order to exist" +subsetdef: scalar_slim "Scalar slim" +subsetdef: value_slim "Value slim" +default-namespace: quality +ontology: pato + +[Term] +id: PATO:0000000 +name: obsolete pato +is_obsolete: true + +[Term] +id: PATO:0000001 +name: quality +alt_id: PATO:0000072 +def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" [PATOC:GVG] + +[Term] +id: PATO:0000002 +name: obsolete value +is_obsolete: true + +[Term] +id: PATO:0000003 +name: obsolete assay +is_obsolete: true + +[Term] +id: PATO:0000004 +name: mobility +def: "A quality of inhering in a bearer by virtue of the bearer's disposition to move freely." [PATOC:GVG] +comment: Should be defined using translocation. +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000005 +name: obsolete absolute activity +is_obsolete: true + +[Term] +id: PATO:0000006 +name: obsolete process +is_obsolete: true + +[Term] +id: PATO:0000007 +name: obsolete relative activity +is_obsolete: true + +[Term] +id: PATO:0000008 +name: speed +def: "A physical quality inhering in a bearer by virtue of the bearer's scalar absolute value of the rate of change of the bearer's position." [Wikipedia:http\://en.wikipedia.org/wiki/Velocity] +subset: attribute_slim +subset: scalar_slim +synonym: "velocity" RELATED [] +is_a: PATO:0001906 ! movement quality + +[Term] +id: PATO:0000009 +name: obsolete absolute speed +is_obsolete: true + +[Term] +id: PATO:0000010 +name: obsolete relative speed +is_obsolete: true + +[Term] +id: PATO:0000011 +name: age +def: "A time quality inhering in a bearer by virtue of how long the bearer has existed." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000165 ! time + +[Term] +id: PATO:0000012 +name: obsolete absolute age +is_obsolete: true + +[Term] +id: PATO:0000013 +name: obsolete relative age +is_obsolete: true + +[Term] +id: PATO:0000014 +name: color +alt_id: PATO:0000020 +def: "A composite chromatic quality composed of hue, saturation and intensity parts." [PATOC:GVG] +subset: attribute_slim +synonym: "colour" EXACT [] +synonym: "relative color" EXACT [] +is_a: PATO:0000051 ! morphology +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0000015 +name: color hue +def: "A chromatic scalar-circular quality inhering in an object that manifests in an observer by virtue of the dominant wavelength of the visible light; may be subject to fiat divisions, typically into 7 or 8 spectra." [PATOC:cjm] +subset: attribute_slim +is_a: PATO:0001301 ! chromatic property + +[Term] +id: PATO:0000016 +name: color brightness +def: "A scalar optical property that is the intensity, value or amount of perceived light." [PATOC:MAH] +comment: Color brightness refers to the intensity, lightness or value of the light present. Think of this as a dimmer switch. +subset: attribute_slim +synonym: "color intensity" EXACT [] +synonym: "color lightness" EXACT [] +synonym: "color value" EXACT [] +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0000017 +name: color saturation +def: "A scalar chromatic property that is the degree of purity of perceived light." [PATOC:GVG] +comment: Color saturation refers to the amount of white light or gray paint mixed in with the hue (single wavelength) and is a measure of color purity. +subset: attribute_slim +is_a: PATO:0001301 ! chromatic property + +[Term] +id: PATO:0000018 +name: fluorescence +def: "A luminous flux quality inhering in a bearer by virtue of the bearer's emitting longer wavelength light following the absorption of shorter wavelength radiation; fluorescence is common with aromatic compounds with several rings joined together." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001296 ! luminous flux + +[Term] +id: PATO:0000019 +name: color pattern +def: "A chromatic property that is the relative position of different hues or degrees of saturation." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0000021 +name: compatibility +def: "A quality inhering in a bearer by virtue of the bearer's disposition to harmonious coexistence." [PATOC:GVG] +comment: Needs redefined or obsoleted. Is this the same as genetic incompatibility? Moved to organismal quality. +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0000022 +name: obsolete gametophytic compatability +is_obsolete: true + +[Term] +id: PATO:0000023 +name: obsolete relative compatability +is_obsolete: true + +[Term] +id: PATO:0000024 +name: obsolete sporophytic compatability +is_obsolete: true + +[Term] +id: PATO:0000025 +name: composition +alt_id: PATO:0002015 +def: "A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts." [PATOC:GVG] +comment: For example calcium composition (which may inhere in bone), haemoglobin composition (which may inhere in blood). +subset: attribute_slim +subset: scalar_slim +synonym: "composed of" EXACT [] +synonym: "compositionality" EXACT [] +synonym: "content" EXACT [] +synonym: "structure, composition" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000026 +name: obsolete carbohydrate composition +is_obsolete: true + +[Term] +id: PATO:0000027 +name: obsolete electrolyte composition +is_obsolete: true + +[Term] +id: PATO:0000028 +name: obsolete macromolecular composition +is_obsolete: true + +[Term] +id: PATO:0000029 +name: obsolete protein composition +is_obsolete: true + +[Term] +id: PATO:0000030 +name: obsolete enzyme composition +is_obsolete: true + +[Term] +id: PATO:0000031 +name: obsolete metabolite composition +is_obsolete: true + +[Term] +id: PATO:0000032 +name: obsolete secondary product composition +is_obsolete: true + +[Term] +id: PATO:0000033 +name: concentration of +def: "A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance." [Wikipedia:http\://en.wikipedia.org/wiki/concentration] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +synonym: "concentration" EXACT [] +is_a: PATO:0002182 ! molecular quality + +[Term] +id: PATO:0000034 +name: obsolete protein concentration +is_obsolete: true + +[Term] +id: PATO:0000035 +name: obsolete carbohydrate concentration +is_obsolete: true + +[Term] +id: PATO:0000036 +name: obsolete water content +is_obsolete: true + +[Term] +id: PATO:0000037 +name: consistency +def: "A physical quality inhering in a bearer by virtue of the bearer's density, firmness, or viscosity." [PATOC:GVG] +subset: attribute_slim +subset: mpath_slim +synonym: "firmness" RELATED [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000038 +name: obsolete gel consistency +is_obsolete: true + +[Term] +id: PATO:0000039 +name: direction +def: "A physical quality inhering in a bearer by virtue of the bearer's orientation in space." [thesaurus.maths:thesaurus.maths] +comment: TODO: consider merging with angular placement. +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000040 +name: distance +def: "A quality that is the extent of space between two entities." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000041 +name: obsolete absolutedistance +is_obsolete: true + +[Term] +id: PATO:0000042 +name: obsolete relative distance +is_obsolete: true + +[Term] +id: PATO:0000043 +name: flavor +def: "A quality of a physical entity inhering in a bearer by virtue of whether the bearer's molecules are being perceived by a taste and odorant receptors." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000044 +name: frequency +def: "A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time." [Wikipedia:http\://en.wikipedia.org/wiki/frequency] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0050000 ! rate of occurence + +[Term] +id: PATO:0000045 +name: obsolete absolute frequency +is_obsolete: true + +[Term] +id: PATO:0000046 +name: obsolete relative frequency +is_obsolete: true + +[Term] +id: PATO:0000047 +name: biological sex +def: "An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved." [MGED:MGED] +subset: attribute_slim +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000048 +name: hardness +def: "A physical quality inhering in a bearer by virtue of the bearer's resistance to pressure, being broken, or pierced" [merriam-webster:merriam-webster] +subset: attribute_slim +subset: disposition_slim +synonym: "impenetrability" RELATED [] +synonym: "toughness" RELATED [] +is_a: PATO:0001546 ! quality of a solid + +[Term] +id: PATO:0000049 +name: intensity +def: "A quality inhering in a bearer by virtue of the bearer's possessing or displaying a distinctive feature in type or degree or effect or force." [PATOC:GVG] +subset: attribute_slim +subset: hpo_slim +is_a: PATO:0000068 ! qualitative + +[Term] +id: PATO:0000050 +name: life span +def: "A time quality inhering in a bearer by virtue of the bearer's expected maximum age." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000165 ! time + +[Term] +id: PATO:0000051 +name: morphology +def: "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0000052 +name: shape +alt_id: PATO:0001647 +def: "A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc)." [PATOC:GVG] +comment: Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects. +subset: attribute_slim +synonym: "relational shape quality" EXACT [] +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000054 +name: obsolete absolute number +is_obsolete: true + +[Term] +id: PATO:0000055 +name: obsolete relative number +is_obsolete: true + +[Term] +id: PATO:0000056 +name: trophic quality +def: "An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth." [Wikipedia:http\://en.wikipedia.org/wiki/Trophic_level] +subset: attribute_slim +subset: disposition_slim +synonym: "nutritional quality" RELATED [] +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000057 +name: occurrence +alt_id: PATO:0000156 +alt_id: PATO:0000158 +def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence." [PATOC:GVG] +subset: attribute_slim +subset: hpo_slim +synonym: "incidence" EXACT [] +synonym: "temporal" BROAD [] +is_a: PATO:0002323 ! temporal distribution quality + +[Term] +id: PATO:0000058 +name: odor +def: "A physical quality inhering in a bearer by virtue of the bearer's molecules being are aerially dispersed and perceived by an odorant receptor." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000059 +name: obsolete parental quality +def: "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a parent." [WordNet:WordNet] +subset: attribute_slim +synonym: "parental type" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0000060 +name: spatial pattern +alt_id: PATO:0000132 +alt_id: PATO:0001565 +def: "A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts." [PATOC:GVG] +subset: attribute_slim +subset: hpo_slim +synonym: "distribution" EXACT [] +synonym: "pattern" RELATED [] +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000061 +name: obsolete relative pattern +is_obsolete: true + +[Term] +id: PATO:0000062 +name: sleep pattern +def: "A sleep quality defined by the mathematic properties of the relative time frames of the sleep cycle." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001530 ! behavioral quality of a process + +[Term] +id: PATO:0000063 +name: obsolete percentage +is_obsolete: true + +[Term] +id: PATO:0000064 +name: obsolete absolute percentage +is_obsolete: true + +[Term] +id: PATO:0000065 +name: obsolete relative percentage +is_obsolete: true + +[Term] +id: PATO:0000066 +name: pilosity +def: "A texture quality inhering in a bearer by virtue of the bearer's having hair or bristles." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0000067 +name: obsolete relative pilosity +is_obsolete: true + +[Term] +id: PATO:0000068 +name: qualitative +comment: TODO: define this or obsolete it and move children somewhere else. +is_a: PATO:0000001 ! quality + +[Term] +id: PATO:0000069 +name: deviation(from_normal) +def: "A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000068 ! qualitative + +[Term] +id: PATO:0000070 +name: amount +alt_id: PATO:0000053 +alt_id: PATO:0000071 +alt_id: PATO:0001169 +alt_id: PATO:0001226 +def: "The number of entities of this type that are part of the whole organism." [PATOC:GVG] +comment: This term was originally named "presence". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10. +subset: attribute_slim +synonym: "count in organism" RELATED [] +synonym: "number" RELATED [] +synonym: "presence" RELATED [] +synonym: "presence or absence in organism" EXACT [] +synonym: "quantitative" EXACT [] +is_a: PATO:0000068 ! qualitative +relationship: reciprocal_of PATO:0001555 ! has number of + +[Term] +id: PATO:0000073 +name: obsolete relative_quality +is_obsolete: true + +[Term] +id: PATO:0000074 +name: obsolete shattering +is_obsolete: true + +[Term] +id: PATO:0000075 +name: obsolete threshability +is_obsolete: true + +[Term] +id: PATO:0000076 +name: obsolete regulation +is_obsolete: true + +[Term] +id: PATO:0000077 +name: response to +def: "A quality inhering in a bearer by virtue of the whether the bearer's disposition to react to a stimulus or an agent." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +subset: scalar_slim +synonym: "reactivity" RELATED [GOC:CJM] +synonym: "response" RELATED [] +synonym: "responsivity" RELATED [] +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000078 +name: rhythm quality +def: "A quality of a single process inhering in a bearer by virtue of the bearer's movement or variation characterized by the regular recurrence or alternation of different quantities or conditions." [answers.com:answers.com] +subset: attribute_slim +is_a: PATO:0002323 ! temporal distribution quality + +[Term] +id: PATO:0000079 +name: obsolete absolute rhythym +is_obsolete: true + +[Term] +id: PATO:0000080 +name: amplitude +def: "A physical quality of a process inhering in a bearer by virtue of the size of the bearer's maximum displacement from the 'normal' position, when periodic motion is taking place." [thesaurus.maths:thesaurus.maths] +subset: attribute_slim +is_a: PATO:0002062 ! physical quality of a process + +[Term] +id: PATO:0000082 +name: persistence +def: "A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm." [reference.com:reference.com] +subset: attribute_slim +is_a: PATO:0000078 ! rhythm quality + +[Term] +id: PATO:0000083 +name: phase +def: "A quality that exists by virtue of being a particular point in the time of a cycle." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0002323 ! temporal distribution quality + +[Term] +id: PATO:0000084 +name: obsolete relative rhythym +is_obsolete: true + +[Term] +id: PATO:0000085 +name: sensitivity toward +def: "A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "sensitivity" EXACT [] +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000086 +name: obsolete absolute sensitivity +is_obsolete: true + +[Term] +id: PATO:0000087 +name: obsolete disease sensitivity +is_obsolete: true + +[Term] +id: PATO:0000088 +name: obsolete absolute disease sensitivity +is_obsolete: true + +[Term] +id: PATO:0000089 +name: obsolete relative disease sensitivity +is_obsolete: true + +[Term] +id: PATO:0000090 +name: obsolete relative sensitivity +is_obsolete: true + +[Term] +id: PATO:0000091 +name: obsolete stress sensitivity +is_obsolete: true + +[Term] +id: PATO:0000092 +name: obsolete abiotic stress sensitivity +is_obsolete: true + +[Term] +id: PATO:0000093 +name: obsolete chemical sensitivity +is_obsolete: true + +[Term] +id: PATO:0000094 +name: obsolete drug sensitivity +is_obsolete: true + +[Term] +id: PATO:0000095 +name: obsolete absolute drug sensitivity +is_obsolete: true + +[Term] +id: PATO:0000096 +name: obsolete relative drug sensitivity +is_obsolete: true + +[Term] +id: PATO:0000097 +name: obsolete herbicide sensitivity +is_obsolete: true + +[Term] +id: PATO:0000098 +name: obsolete insecticide sensitivity +is_obsolete: true + +[Term] +id: PATO:0000099 +name: obsolete plant growth hormone sensitivity +is_obsolete: true + +[Term] +id: PATO:0000100 +name: obsolete soil composition sensitivity +is_obsolete: true + +[Term] +id: PATO:0000101 +name: obsolete soil nutrient sensitivity +is_obsolete: true + +[Term] +id: PATO:0000102 +name: obsolete macronutrient sensitivity +is_obsolete: true + +[Term] +id: PATO:0000103 +name: obsolete micronutrient sensitivity +is_obsolete: true + +[Term] +id: PATO:0000104 +name: obsolete osmotic response sensitivity +is_obsolete: true + +[Term] +id: PATO:0000105 +name: obsolete p h sensitivity +is_obsolete: true + +[Term] +id: PATO:0000106 +name: obsolete acid sensitivity +is_obsolete: true + +[Term] +id: PATO:0000107 +name: obsolete alkali sensitivity +is_obsolete: true + +[Term] +id: PATO:0000108 +name: obsolete salt sensitivity +is_obsolete: true + +[Term] +id: PATO:0000109 +name: obsolete water sensitivity +is_obsolete: true + +[Term] +id: PATO:0000110 +name: obsolete drought sensitivity +is_obsolete: true + +[Term] +id: PATO:0000111 +name: obsolete flooding sensitivity +is_obsolete: true + +[Term] +id: PATO:0000112 +name: obsolete humidity sensitivity +is_obsolete: true + +[Term] +id: PATO:0000113 +name: obsolete radiation sensitivity +is_obsolete: true + +[Term] +id: PATO:0000114 +name: obsolete temperature sensitivity +is_obsolete: true + +[Term] +id: PATO:0000115 +name: obsolete absolute temperature sensitivity +is_obsolete: true + +[Term] +id: PATO:0000116 +name: obsolete relative temperature sensitivity +is_obsolete: true + +[Term] +id: PATO:0000117 +name: size +def: "A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000118 +name: obsolete absolute size +is_obsolete: true + +[Term] +id: PATO:0000119 +name: height +def: "A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0000120 +name: obsolete absolute height +is_obsolete: true + +[Term] +id: PATO:0000121 +name: obsolete relative height +is_obsolete: true + +[Term] +id: PATO:0000122 +name: length +def: "A 1-D extent quality which is equal to the distance between two points." [PATOC:GVG] +subset: attribute_slim +subset: mpath_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0000123 +name: obsolete absolute length +is_obsolete: true + +[Term] +id: PATO:0000124 +name: obsolete relative length +is_obsolete: true + +[Term] +id: PATO:0000125 +name: mass +def: "A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000126 +name: obsolete absolute mass +is_obsolete: true + +[Term] +id: PATO:0000127 +name: obsolete relative mass +is_obsolete: true + +[Term] +id: PATO:0000128 +name: weight +def: "A physical quality inhering in a bearer that has mass near a gravitational body." [Wikipedia:http\://en.wikipedia.org/wiki/Weight] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001035 ! force + +[Term] +id: PATO:0000129 +name: obsolete absolute weight +is_obsolete: true + +[Term] +id: PATO:0000130 +name: obsolete relative weight +is_obsolete: true + +[Term] +id: PATO:0000131 +name: obsolete relative size +is_obsolete: true + +[Term] +id: PATO:0000133 +name: orientation +alt_id: PATO:0000137 +def: "A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object." [PATOC:JE] +subset: attribute_slim +subset: relational_slim +synonym: "amount of rotation" RELATED [] +synonym: "angle" RELATED [] +synonym: "angular magnitude" RELATED [] +synonym: "angular placement" EXACT [] +synonym: "plane angle" RELATED [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000134 +name: obsolete absolute_angle +is_obsolete: true + +[Term] +id: PATO:0000135 +name: obsolete relative_angle +is_obsolete: true + +[Term] +id: PATO:0000136 +name: closure +def: "A morphological quality pertaining to the degree to which an object contains an opening, aperture, orifice or vent." [PATOC:CJM, PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000138 +name: obsolete absolute orientation +is_obsolete: true + +[Term] +id: PATO:0000139 +name: obsolete relative orientation +is_obsolete: true + +[Term] +id: PATO:0000140 +name: position +alt_id: PATO:0001032 +alt_id: PATO:0001631 +def: "A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity." [PATOC:GVG] +subset: attribute_slim +synonym: "location" EXACT [] +synonym: "placement" EXACT [] +synonym: "relational spatial quality" EXACT [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000141 +name: structure +alt_id: PATO:0001452 +def: "A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form." [PATOC:GVG] +subset: attribute_slim +synonym: "conformation" BROAD [VT:1000738] +synonym: "relational structural quality" EXACT [] +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000142 +name: obsolete substance +is_obsolete: true + +[Term] +id: PATO:0000143 +name: obsolete addictive substance +is_obsolete: true + +[Term] +id: PATO:0000144 +name: obsolete solid substance +comment: This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a solid; 'PATO:0001546' +is_obsolete: true + +[Term] +id: PATO:0000145 +name: obsolete liquid substance +comment: This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a liquid; PATO:0001548 ' +is_obsolete: true + +[Term] +id: PATO:0000146 +name: temperature +def: "A physical quality of the thermal energy of a system." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000147 +name: obsolete absolute temperature +is_obsolete: true + +[Term] +id: PATO:0000148 +name: obsolete body temperature +is_obsolete: true + +[Term] +id: PATO:0000149 +name: obsolete relative temperature +is_obsolete: true + +[Term] +id: PATO:0000150 +name: texture +def: "A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000151 +name: obsolete relative texture +is_obsolete: true + +[Term] +id: PATO:0000152 +name: threshold +def: "A quality inhering in a bearer by virtue of the bearer's sensitivity towards a fixed location or value where a change is observed; upper limit." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0000085 ! sensitivity toward + +[Term] +id: PATO:0000153 +name: obsolete absolute threshold +is_obsolete: true + +[Term] +id: PATO:0000154 +name: obsolete pain threshold +is_obsolete: true + +[Term] +id: PATO:0000155 +name: obsolete relative threshold +is_obsolete: true + +[Term] +id: PATO:0000157 +name: obsolete absolute temporal +is_obsolete: true + +[Term] +id: PATO:0000159 +name: obsolete absolute incidence +is_obsolete: true + +[Term] +id: PATO:0000160 +name: obsolete relative incidence +is_obsolete: true + +[Term] +id: PATO:0000161 +name: rate +def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time." [PATOC:melissa] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002062 ! physical quality of a process + +[Term] +id: PATO:0000162 +name: obsolete absolute rate +is_obsolete: true + +[Term] +id: PATO:0000163 +name: obsolete relative rate +is_obsolete: true + +[Term] +id: PATO:0000164 +name: obsolete relative temporal +is_obsolete: true + +[Term] +id: PATO:0000165 +name: time +def: "A quality in which events occur in sequence." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0000166 +name: obsolete absolute time +is_obsolete: true + +[Term] +id: PATO:0000167 +name: obsolete bouts +def: "A limited, often assigned period of activity." [answers.com:answers.com] +subset: attribute_slim +is_obsolete: true + +[Term] +id: PATO:0000168 +name: obsolete relative time +is_obsolete: true + +[Term] +id: PATO:0000169 +name: viability +def: "An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000170 +name: obsolete yield +is_obsolete: true + +[Term] +id: PATO:0000171 +name: obsolete absolute yield +is_obsolete: true + +[Term] +id: PATO:0000172 +name: obsolete relative yield +is_obsolete: true + +[Term] +id: PATO:0000173 +name: obsolete function +is_obsolete: true + +[Term] +id: PATO:0000174 +name: obsolete autonomic function +is_obsolete: true + +[Term] +id: PATO:0000175 +name: obsolete behavioral function +is_obsolete: true + +[Term] +id: PATO:0000176 +name: obsolete metabolic function +is_obsolete: true + +[Term] +id: PATO:0000177 +name: obsolete physiological function +is_obsolete: true + +[Term] +id: PATO:0000178 +name: obsolete relative function +is_obsolete: true + +[Term] +id: PATO:0000179 +name: obsolete body position +is_obsolete: true + +[Term] +id: PATO:0000180 +name: obsolete body tone +is_obsolete: true + +[Term] +id: PATO:0000181 +name: obsolete piloerection +is_obsolete: true + +[Term] +id: PATO:0000182 +name: obsolete abdominal tone +is_obsolete: true + +[Term] +id: PATO:0000183 +name: obsolete limb tone +is_obsolete: true + +[Term] +id: PATO:0000184 +name: obsolete arousal +is_obsolete: true + +[Term] +id: PATO:0000185 +name: balance +def: "A behavioral quality inhering in a bearer by virtue of having physical steadiness." [thefreedictionary:thefreedictionary] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0000186 +name: behavioral quality +alt_id: PATO:0001722 +def: "An organismal quality inhering in a bearer by virtue of the bearer's behavior aggregate of the responses or reactions or movements in a given situation." [PATOC:GVG] +synonym: "behavioural quality" EXACT [] +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000187 +name: obsolete consumption quality +def: "A relational quality of occurrent inhering in a bearer by virtue of the bearer's ability to consume a resource." [PATOC:GVG] +comment: Use GO:0007631 +subset: attribute_slim +subset: relational_slim +synonym: "propensity to consume" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000188 +name: coordination +def: "A behavioral quality inhering in a bearer by virtue of the bearer's having or lacking skillful and effective interaction of movement." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0000189 +name: discrimination +def: "A behavioral quality inhering in a bearer by virtue of whether the bearer's disposition to perceive differences between two or more stimuli." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0000190 +name: obsolete gait +is_obsolete: true + +[Term] +id: PATO:0000191 +name: obsolete learning_and memory +is_obsolete: true + +[Term] +id: PATO:0000192 +name: obsolete locomotor_activity +is_obsolete: true + +[Term] +id: PATO:0000193 +name: obsolete mating +is_obsolete: true + +[Term] +id: PATO:0000194 +name: obsolete spontaneous_activity +is_obsolete: true + +[Term] +id: PATO:0000195 +name: obsolete startle response +is_obsolete: true + +[Term] +id: PATO:0000196 +name: obsolete vocalization +is_obsolete: true + +[Term] +id: PATO:0000197 +name: obsolete transfer_arousal +is_obsolete: true + +[Term] +id: PATO:0000198 +name: obsolete absolute consumption +is_obsolete: true + +[Term] +id: PATO:0000199 +name: obsolete relative consumption +is_obsolete: true + +[Term] +id: PATO:0000200 +name: obsolete learning +is_obsolete: true + +[Term] +id: PATO:0000201 +name: obsolete memory +is_obsolete: true + +[Term] +id: PATO:0000202 +name: obsolete long term memory +is_obsolete: true + +[Term] +id: PATO:0000203 +name: obsolete short term memory +is_obsolete: true + +[Term] +id: PATO:0000204 +name: obsolete absolute locomotor_activity +is_obsolete: true + +[Term] +id: PATO:0000205 +name: obsolete relative locomotor_activity +is_obsolete: true + +[Term] +id: PATO:0000206 +name: obsolete enzyme function +is_obsolete: true + +[Term] +id: PATO:0000207 +name: obsolete circulatory function +is_obsolete: true + +[Term] +id: PATO:0000208 +name: obsolete defensive function +is_obsolete: true + +[Term] +id: PATO:0000209 +name: obsolete digestive function +is_obsolete: true + +[Term] +id: PATO:0000210 +name: obsolete excretory function +is_obsolete: true + +[Term] +id: PATO:0000211 +name: obsolete muscle function +is_obsolete: true + +[Term] +id: PATO:0000212 +name: obsolete neural function +is_obsolete: true + +[Term] +id: PATO:0000213 +name: obsolete neurobehavioral function +is_obsolete: true + +[Term] +id: PATO:0000214 +name: obsolete reproductive function +is_obsolete: true + +[Term] +id: PATO:0000215 +name: obsolete respiratory function +is_obsolete: true + +[Term] +id: PATO:0000216 +name: obsolete heart rate +is_obsolete: true + +[Term] +id: PATO:0000217 +name: obsolete immune function +is_obsolete: true + +[Term] +id: PATO:0000218 +name: obsolete repair function +is_obsolete: true + +[Term] +id: PATO:0000219 +name: obsolete healing +is_obsolete: true + +[Term] +id: PATO:0000220 +name: obsolete regeneration +is_obsolete: true + +[Term] +id: PATO:0000221 +name: obsolete urination +is_obsolete: true + +[Term] +id: PATO:0000222 +name: obsolete muscle elevation +is_obsolete: true + +[Term] +id: PATO:0000223 +name: obsolete muscle strength +is_obsolete: true + +[Term] +id: PATO:0000224 +name: obsolete motor function +is_obsolete: true + +[Term] +id: PATO:0000225 +name: obsolete sensory function +is_obsolete: true + +[Term] +id: PATO:0000226 +name: obsolete tactile response +is_obsolete: true + +[Term] +id: PATO:0000227 +name: obsolete motor performance +is_obsolete: true + +[Term] +id: PATO:0000228 +name: obsolete auditory +is_obsolete: true + +[Term] +id: PATO:0000229 +name: obsolete olfactory +is_obsolete: true + +[Term] +id: PATO:0000230 +name: obsolete proprioreception +is_obsolete: true + +[Term] +id: PATO:0000231 +name: obsolete reflex +is_obsolete: true + +[Term] +id: PATO:0000232 +name: obsolete taste +is_obsolete: true + +[Term] +id: PATO:0000233 +name: obsolete touch +is_obsolete: true + +[Term] +id: PATO:0000234 +name: obsolete visual +is_obsolete: true + +[Term] +id: PATO:0000235 +name: obsolete odor_acuity +is_obsolete: true + +[Term] +id: PATO:0000236 +name: obsolete odor type +is_obsolete: true + +[Term] +id: PATO:0000237 +name: obsolete absolute odor_acuity +is_obsolete: true + +[Term] +id: PATO:0000238 +name: obsolete relative odor_acuity +is_obsolete: true + +[Term] +id: PATO:0000239 +name: obsolete blinking reflex +is_obsolete: true + +[Term] +id: PATO:0000240 +name: obsolete contact righting reflex +is_obsolete: true + +[Term] +id: PATO:0000241 +name: obsolete corneal reflex +is_obsolete: true + +[Term] +id: PATO:0000242 +name: obsolete flinch reflex +is_obsolete: true + +[Term] +id: PATO:0000243 +name: obsolete lordosis reflex +is_obsolete: true + +[Term] +id: PATO:0000244 +name: obsolete ocular reflex +is_obsolete: true + +[Term] +id: PATO:0000245 +name: obsolete pinna reflex +is_obsolete: true + +[Term] +id: PATO:0000246 +name: obsolete postural reflex +is_obsolete: true + +[Term] +id: PATO:0000247 +name: obsolete proboscis extension reflex +is_obsolete: true + +[Term] +id: PATO:0000248 +name: obsolete pupillary reflex +is_obsolete: true + +[Term] +id: PATO:0000249 +name: obsolete righting reflex +is_obsolete: true + +[Term] +id: PATO:0000250 +name: obsolete spinal reflex +is_obsolete: true + +[Term] +id: PATO:0000251 +name: obsolete startle reflex +is_obsolete: true + +[Term] +id: PATO:0000252 +name: obsolete suckling reflex +is_obsolete: true + +[Term] +id: PATO:0000253 +name: obsolete swallowing reflex +is_obsolete: true + +[Term] +id: PATO:0000254 +name: obsolete vibrissae reflex +is_obsolete: true + +[Term] +id: PATO:0000255 +name: obsolete taste_acuity +is_obsolete: true + +[Term] +id: PATO:0000256 +name: obsolete taste type +is_obsolete: true + +[Term] +id: PATO:0000257 +name: obsolete absolute taste_acuity +is_obsolete: true + +[Term] +id: PATO:0000258 +name: obsolete relative taste_acuity +is_obsolete: true + +[Term] +id: PATO:0000259 +name: obsolete visual_ability +is_obsolete: true + +[Term] +id: PATO:0000260 +name: obsolete visual_acuity +is_obsolete: true + +[Term] +id: PATO:0000261 +name: maturity +def: "A quality of a single physical entity which is held by a bearer when the latter exhibits a state of growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] +subset: attribute_slim +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0000262 +name: obsolete visual placing +is_obsolete: true + +[Term] +id: PATO:0000263 +name: obsolete visual threshold +is_obsolete: true + +[Term] +id: PATO:0000264 +name: obsolete absolute visual_ability +is_obsolete: true + +[Term] +id: PATO:0000265 +name: obsolete relative visual_ability +is_obsolete: true + +[Term] +id: PATO:0000266 +name: obsolete absolute visual_acuity +is_obsolete: true + +[Term] +id: PATO:0000267 +name: obsolete relative visual_acuity +is_obsolete: true + +[Term] +id: PATO:0000268 +name: obsolete absolute visual threshold +is_obsolete: true + +[Term] +id: PATO:0000269 +name: obsolete relative visual threshold +is_obsolete: true + +[Term] +id: PATO:0000270 +name: obsolete defecation +is_obsolete: true + +[Term] +id: PATO:0000271 +name: obsolete prepulse inhibition +is_obsolete: true + +[Term] +id: PATO:0000272 +name: obsolete relative neurobehavioral function +is_obsolete: true + +[Term] +id: PATO:0000273 +name: fecundity +def: "A reproductive quality inhering in an organism or population by virtue of the bearer's potential reproductive capacity ad measured by the number of gametes." [Wikipedia:http\://en.wikipedia.org/wiki/Fecundity] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001434 ! reproductive quality + +[Term] +id: PATO:0000274 +name: fertility +def: "A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001434 ! reproductive quality + +[Term] +id: PATO:0000275 +name: obsolete gestational period +is_obsolete: true + +[Term] +id: PATO:0000276 +name: brood size +def: "A reproductive quality inhering in the young of an animal by virtue of their number." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +synonym: "litter size" RELATED [] +is_a: PATO:0001496 ! brood quality + +[Term] +id: PATO:0000277 +name: female fertility +def: "A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000274 ! fertility + +[Term] +id: PATO:0000278 +name: obsolete hybrid fertility +is_obsolete: true + +[Term] +id: PATO:0000279 +name: male fertility +def: "A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000274 ! fertility + +[Term] +id: PATO:0000280 +name: obsolete backcross fertility +is_obsolete: true + +[Term] +id: PATO:0000281 +name: obsolete cytoplasmic sterility +is_obsolete: true + +[Term] +id: PATO:0000282 +name: obsolete f1 fertility +is_obsolete: true + +[Term] +id: PATO:0000283 +name: obsolete f2 fertility +is_obsolete: true + +[Term] +id: PATO:0000284 +name: obsolete germ line dependent fertility +is_obsolete: true + +[Term] +id: PATO:0000285 +name: obsolete soma dependent fertility +is_obsolete: true + +[Term] +id: PATO:0000286 +name: obsolete cytoplasmic male sterility +is_obsolete: true + +[Term] +id: PATO:0000287 +name: obsolete absolute litter size +is_obsolete: true + +[Term] +id: PATO:0000288 +name: obsolete relative litter size +is_obsolete: true + +[Term] +id: PATO:0000289 +name: obsolete respiratory rate +is_obsolete: true + +[Term] +id: PATO:0000290 +name: obsolete absolute respiratory rate +is_obsolete: true + +[Term] +id: PATO:0000291 +name: obsolete relative respiratory rate +is_obsolete: true + +[Term] +id: PATO:0000292 +name: obsolete mobility value +is_obsolete: true + +[Term] +id: PATO:0000293 +name: obsolete absolute activity value +is_obsolete: true + +[Term] +id: PATO:0000294 +name: obsolete process value +is_obsolete: true + +[Term] +id: PATO:0000295 +name: obsolete relative activity value +is_obsolete: true + +[Term] +id: PATO:0000296 +name: obsolete speed value +is_obsolete: true + +[Term] +id: PATO:0000297 +name: arrested +alt_id: PATO:0001508 +def: "A quality of a process which ends earlier than the natural end time or reference process." [PATOC:LC] +comment: TODO: the definition is incorrect. See absent. +subset: value_slim +synonym: "abolished" EXACT [] +synonym: "incomplete" RELATED [] +is_a: PATO:0002052 ! decreased occurrence +is_a: PATO:0002324 ! offset quality +relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal + +[Term] +id: PATO:0000298 +name: obsolete not arrested value +is_obsolete: true + +[Term] +id: PATO:0000299 +name: mobile +def: "A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000004 ! mobility +disjoint_from: PATO:0000300 ! immobile +relationship: is_opposite_of PATO:0000300 ! immobile + +[Term] +id: PATO:0000300 +name: immobile +def: "A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "fixed" RELATED [] +is_a: PATO:0000004 ! mobility +relationship: is_opposite_of PATO:0000299 ! mobile + +[Term] +id: PATO:0000301 +name: obsolete absolute speed value +is_obsolete: true + +[Term] +id: PATO:0000302 +name: obsolete relative speed value +is_obsolete: true + +[Term] +id: PATO:0000303 +name: increased speed +def: "A speed which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "fast speed" RELATED [] +synonym: "high speed" EXACT [] +is_a: PATO:0000008 ! speed +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000008 ! speed +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000304 ! decreased speed + +[Term] +id: PATO:0000304 +name: decreased speed +def: "A speed which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "slow" EXACT [] +synonym: "slow speed" EXACT [] +is_a: PATO:0000008 ! speed +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000008 ! speed +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000303 ! increased speed + +[Term] +id: PATO:0000305 +name: obsolete age value +is_obsolete: true + +[Term] +id: PATO:0000306 +name: obsolete absolute age value +is_obsolete: true + +[Term] +id: PATO:0000307 +name: obsolete relative age value +is_obsolete: true + +[Term] +id: PATO:0000308 +name: old +def: "An age which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000011 ! age +relationship: is_opposite_of PATO:0000309 ! young + +[Term] +id: PATO:0000309 +name: young +def: "An age which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000011 ! age +relationship: is_opposite_of PATO:0000308 ! old + +[Term] +id: PATO:0000310 +name: obsolete color value +is_obsolete: true + +[Term] +id: PATO:0000311 +name: obsolete color hue value +is_obsolete: true + +[Term] +id: PATO:0000312 +name: obsolete color intensity value +is_obsolete: true + +[Term] +id: PATO:0000313 +name: obsolete color saturation value +is_obsolete: true + +[Term] +id: PATO:0000314 +name: obsolete flourescence value +is_obsolete: true + +[Term] +id: PATO:0000315 +name: obsolete color pattern value +is_obsolete: true + +[Term] +id: PATO:0000316 +name: obsolete relative color value +is_obsolete: true + +[Term] +id: PATO:0000317 +name: black +def: "A color that lacks any hues as parts." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000318 +name: blue +def: "A color hue with low wavelength of that portion of the visible spectrum lying between green and indigo, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 490 nanometers." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000319 +name: cyan +def: "A color consisting of green and blue hue." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000320 +name: green +def: "A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000321 +name: magenta +def: "A color consisting of red and blue hues." [Wikipedia:http\://en.wikipedia.org/wiki/Magenta] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000322 +name: red +def: "A color hue with high wavelength of the long-wave end of the visible spectrum, evoked in the human observer by radiant energy with wavelengths of approximately 630 to 750 nanometers." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000323 +name: white +def: "An achromatic color of maximum brightness; the color of objects that reflect nearly all light of all visible wavelengths." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +synonym: "whitish" RELATED [] +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000324 +name: yellow +def: "A color hue with medium wavelength of that portion of the visible spectrum lying between orange and green, evoked in the human observer by radiant energy with wavelengths of approximately 570 to 590 nanometers." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000325 +name: obsolete bright +is_obsolete: true + +[Term] +id: PATO:0000326 +name: obsolete dim +is_obsolete: true + +[Term] +id: PATO:0000327 +name: low brightness +def: "A color brightness which is relatively low." [PATOC:MAH] +subset: value_slim +synonym: "dark" EXACT [] +is_a: PATO:0000016 ! color brightness +relationship: is_opposite_of PATO:0000665 ! high brightness + +[Term] +id: PATO:0000328 +name: low saturation +def: "A color saturation which is of low purity." [PATOC:MAH] +subset: value_slim +synonym: "dull" RELATED [] +synonym: "pale" EXACT [] +is_a: PATO:0000017 ! color saturation +relationship: is_opposite_of PATO:0001229 ! high saturation + +[Term] +id: PATO:0000329 +name: blotchy +def: "A color pattern inhering in a bearer by virtue of bearer's being marked with irregularly shaped spots or blots of a different hue or degree of saturation." [Dictionary.com:Dictionary.com] +subset: value_slim +synonym: "blotched" EXACT [] +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0000330 +name: irregular spatial pattern +def: "A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +relationship: is_opposite_of PATO:0000440 ! regular spatial pattern + +[Term] +id: PATO:0000331 +name: discolored +def: "A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color." [Dictionary.com:Dictionary.com] +subset: value_slim +is_a: PATO:0000019 ! color pattern +relationship: is_opposite_of PATO:0000336 ! colored + +[Term] +id: PATO:0000333 +name: spotted +def: "A color pattern inhering in a bearer by virtue of bearer's being marked with a round area of different hue or degree of saturation." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0000335 +name: obsolete variegated +synonym: "mottled (sensu Drosophila)" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000336 +name: colored +alt_id: PATO:0000332 +def: "A color quality inhering in a bearer by virtue of the bearer's having color." [PATOC:GVG] +subset: value_slim +synonym: "pigmented" RELATED [] +is_a: PATO:0000014 ! color +relationship: is_opposite_of PATO:0000331 ! discolored + +[Term] +id: PATO:0000337 +name: colorless +alt_id: PATO:0000334 +def: "A color quality inhering in a bearer by virtue of the bearer's lacking color." [PATOC:GVG] +subset: value_slim +synonym: "unpigmented" RELATED [] +is_a: PATO:0000019 ! color pattern + +[Term] +id: PATO:0000338 +name: obsolete compatability value +is_obsolete: true + +[Term] +id: PATO:0000339 +name: obsolete gametophytic compatability value +is_obsolete: true + +[Term] +id: PATO:0000340 +name: obsolete relative compatability value +is_obsolete: true + +[Term] +id: PATO:0000341 +name: obsolete sporophytic compatability value +is_obsolete: true + +[Term] +id: PATO:0000342 +name: obsolete gametophyte compatible value +is_obsolete: true + +[Term] +id: PATO:0000343 +name: obsolete gametophyte incompatible value +is_obsolete: true + +[Term] +id: PATO:0000344 +name: compatible +def: "A compatibility quality inhering in a bearer by virtue of the bearer's being capable of harmonious coexistence." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000021 ! compatibility +disjoint_from: PATO:0000345 ! incompatible +relationship: is_opposite_of PATO:0000345 ! incompatible + +[Term] +id: PATO:0000345 +name: incompatible +def: "A compatibility quality inhering in a bearer by virtue of the bearer's being incapable of harmonious coexistence." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000021 ! compatibility +relationship: is_opposite_of PATO:0000344 ! compatible + +[Term] +id: PATO:0000346 +name: obsolete sporophyte compatible value +is_obsolete: true + +[Term] +id: PATO:0000347 +name: obsolete sporophyte incompatible value +is_obsolete: true + +[Term] +id: PATO:0000348 +name: obsolete composition value +is_obsolete: true + +[Term] +id: PATO:0000349 +name: obsolete carbohydrate composition value +is_obsolete: true + +[Term] +id: PATO:0000350 +name: obsolete electrolyte composition value +is_obsolete: true + +[Term] +id: PATO:0000351 +name: obsolete macromolecular composition value +is_obsolete: true + +[Term] +id: PATO:0000352 +name: obsolete metabolite composition value +is_obsolete: true + +[Term] +id: PATO:0000353 +name: obsolete secondary product composition value +is_obsolete: true + +[Term] +id: PATO:0000354 +name: obsolete protein composition value +is_obsolete: true + +[Term] +id: PATO:0000355 +name: obsolete enzyme composition value +is_obsolete: true + +[Term] +id: PATO:0000356 +name: obsolete concentration value +is_obsolete: true + +[Term] +id: PATO:0000357 +name: obsolete protein concentration value +is_obsolete: true + +[Term] +id: PATO:0000358 +name: obsolete sugar concentration value +is_obsolete: true + +[Term] +id: PATO:0000359 +name: obsolete water content value +is_obsolete: true + +[Term] +id: PATO:0000360 +name: obsolete consistency value +is_obsolete: true + +[Term] +id: PATO:0000361 +name: obsolete gel consistency value +is_obsolete: true + +[Term] +id: PATO:0000362 +name: obsolete direction value +is_obsolete: true + +[Term] +id: PATO:0000363 +name: obsolete away +is_obsolete: true + +[Term] +id: PATO:0000364 +name: obsolete bi-directional +is_obsolete: true + +[Term] +id: PATO:0000365 +name: down +def: "A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction +relationship: is_opposite_of PATO:0000370 ! up + +[Term] +id: PATO:0000366 +name: left +def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces east." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction + +[Term] +id: PATO:0000367 +name: right +def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces west." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction + +[Term] +id: PATO:0000368 +name: obsolete towards1 +is_obsolete: true + +[Term] +id: PATO:0000369 +name: obsolete unidirectional +is_obsolete: true + +[Term] +id: PATO:0000370 +name: up +def: "A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction +relationship: is_opposite_of PATO:0000365 ! down + +[Term] +id: PATO:0000371 +name: obsolete distance value +is_obsolete: true + +[Term] +id: PATO:0000372 +name: obsolete absolute distance value +is_obsolete: true + +[Term] +id: PATO:0000373 +name: obsolete relative distance value +is_obsolete: true + +[Term] +id: PATO:0000374 +name: increased distance +def: "A distance which is greater relative to the normal or average." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "long distance" RELATED [] +is_a: PATO:0000040 ! distance +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000040 ! distance +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000375 ! decreased distance + +[Term] +id: PATO:0000375 +name: decreased distance +def: "A distance which is lesser relative to the normal or average." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "short distance" RELATED [] +is_a: PATO:0000040 ! distance +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000040 ! distance +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000374 ! increased distance + +[Term] +id: PATO:0000376 +name: obsolete flavor value +is_obsolete: true + +[Term] +id: PATO:0000377 +name: obsolete frequency value +is_obsolete: true + +[Term] +id: PATO:0000378 +name: obsolete absolute frequency value +is_obsolete: true + +[Term] +id: PATO:0000379 +name: obsolete relative frequency value +is_obsolete: true + +[Term] +id: PATO:0000380 +name: increased frequency +def: "A frequency which is relatively high." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "frequent" RELATED [] +synonym: "high frequency" EXACT [] +is_a: PATO:0000044 ! frequency +is_a: PATO:0000912 ! increased rate +intersection_of: PATO:0000044 ! frequency +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000381 ! decreased frequency + +[Term] +id: PATO:0000381 +name: decreased frequency +def: "A frequency which is relatively low." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "infrequent" RELATED [] +synonym: "low frequency" EXACT [] +is_a: PATO:0000044 ! frequency +is_a: PATO:0000911 ! decreased rate +intersection_of: PATO:0000044 ! frequency +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000380 ! increased frequency + +[Term] +id: PATO:0000382 +name: obsolete gender value +is_obsolete: true + +[Term] +id: PATO:0000383 +name: female +def: "A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes." [MGED:MGED] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001894 ! phenotypic sex + +[Term] +id: PATO:0000384 +name: male +def: "A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes." [MGED:MGED] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001894 ! phenotypic sex + +[Term] +id: PATO:0000385 +name: obsolete hardness value +is_obsolete: true + +[Term] +id: PATO:0000386 +name: hard +def: "A hardness quality of being rigid and resistant to pressure." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +synonym: "firm" RELATED [] +synonym: "impenetrable" RELATED [] +synonym: "tough" RELATED [] +is_a: PATO:0000048 ! hardness +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000048 ! hardness +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000387 ! soft + +[Term] +id: PATO:0000387 +name: soft +def: "A hardness quality of giving little resistance to pressure." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000048 ! hardness +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000048 ! hardness +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000386 ! hard + +[Term] +id: PATO:0000388 +name: obsolete intensity value +is_obsolete: true + +[Term] +id: PATO:0000389 +name: acute +def: "A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course." [dictionary:reference] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001309 ! duration +relationship: is_opposite_of PATO:0001863 ! chronic + +[Term] +id: PATO:0000390 +name: obsolete extreme +is_obsolete: true + +[Term] +id: PATO:0000391 +name: obsolete intense +is_obsolete: true + +[Term] +id: PATO:0000392 +name: obsolete limited +is_obsolete: true + +[Term] +id: PATO:0000393 +name: obsolete maximal +is_obsolete: true + +[Term] +id: PATO:0000394 +name: mild intensity +def: "An intensity which is less than moderate in type or degree or effect or force." [PATOC:GVG] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000049 ! intensity + +[Term] +id: PATO:0000395 +name: moderate intensity +def: "An intensity which is less than extreme in type or degree or effect or force." [Merriam-Webster:Merriam-Webster] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000049 ! intensity + +[Term] +id: PATO:0000396 +name: severe intensity +def: "An intensity which is extremely bad or unpleasant in type or degree or effect or force." [WordNet:WordNet] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000049 ! intensity + +[Term] +id: PATO:0000397 +name: obsolete slight +subset: mpath_slim +is_obsolete: true + +[Term] +id: PATO:0000398 +name: obsolete vigorous +is_obsolete: true + +[Term] +id: PATO:0000399 +name: obsolete life span value +is_obsolete: true + +[Term] +id: PATO:0000400 +name: obsolete morphology value +is_obsolete: true + +[Term] +id: PATO:0000401 +name: obsolete shape value +is_obsolete: true + +[Term] +id: PATO:0000402 +name: branched +def: "A branchiness quality inhering in a bearer by virtue of the bearer's having branches." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "ramified" EXACT [] +synonym: "ramiform" EXACT [] +is_a: PATO:0002009 ! branchiness +disjoint_from: PATO:0000414 ! unbranched +relationship: is_opposite_of PATO:0000414 ! unbranched + +[Term] +id: PATO:0000403 +name: cleft +def: "A concave quality inhering in a bearer by virtue of the bearer's resembling a groove or fissure." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001857 ! concave + +[Term] +id: PATO:0000404 +name: coiled +alt_id: PATO:0001363 +def: "A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals)." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "helical" RELATED [] +synonym: "helicoid" RELATED [] +synonym: "helicoidal" RELATED [] +synonym: "helix-shaped" RELATED [] +synonym: "spiral" EXACT [] +is_a: PATO:0001794 ! coiling +relationship: is_opposite_of PATO:0000415 ! uncoiled + +[Term] +id: PATO:0000405 +name: curled +def: "A shape quality inhering in a bearer by virtue of the bearer's having parallel chains in undulate fashion on the border." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000406 +name: curved +def: "A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +synonym: "bowing" NARROW [] +synonym: "curled" RELATED [] +is_a: PATO:0001591 ! curvature + +[Term] +id: PATO:0000407 +name: flat +def: "A quality inhering in a bearer by virtue of the bearer's having a horizontal surface without a slope, tilt, or curvature." [web:http\://www.merriam-webster.com/] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "plate-like" RELATED [] +is_a: PATO:0002254 ! flattened + +[Term] +id: PATO:0000409 +name: oblate +def: "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting an equatorial diameter greater than its polar diameter." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "oblate spheroid" EXACT [] +is_a: PATO:0001865 ! spheroid + +[Term] +id: PATO:0000410 +name: pinnate +def: "A shape quality inhering in a bearer by virtue of the bearer's having leaflets or leaflets-like structures on each side of a common axis." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "feather-like" RELATED [] +synonym: "of a leaf shape" RELATED [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000411 +name: circular +def: "A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center." [thefreedictionary.com:thefreedictionary.com] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "round" RELATED [] +synonym: "rounded" RELATED [] +is_a: PATO:0000947 ! elliptic + +[Term] +id: PATO:0000413 +name: square +def: "A shape quality inhering in a bearer by virtue of the bearer's having an equal-sided rectangular form." [answers.com:answers.com] +subset: cell_quality +subset: value_slim +is_a: PATO:0002317 ! parallelogram + +[Term] +id: PATO:0000414 +name: unbranched +def: "A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0002009 ! branchiness +relationship: is_opposite_of PATO:0000402 ! branched + +[Term] +id: PATO:0000415 +name: uncoiled +def: "A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals)." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001794 ! coiling +relationship: is_opposite_of PATO:0000404 ! coiled + +[Term] +id: PATO:0000416 +name: obsolete count value +is_obsolete: true + +[Term] +id: PATO:0000417 +name: obsolete absolute number value +is_obsolete: true + +[Term] +id: PATO:0000418 +name: obsolete relative number value +is_obsolete: true + +[Term] +id: PATO:0000421 +name: obsolete nutritional value +is_obsolete: true + +[Term] +id: PATO:0000422 +name: auxotrophic +def: "A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth." [Wikipedia:http\://en.wikipedia.org/wiki/Auxotrophic] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000056 ! trophic quality +relationship: is_opposite_of PATO:0000423 ! prototrophic + +[Term] +id: PATO:0000423 +name: prototrophic +def: "A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth." [Wikipedia:http\://en.wikipedia.org/wiki/Prototrophic] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000056 ! trophic quality +relationship: is_opposite_of PATO:0000422 ! auxotrophic + +[Term] +id: PATO:0000424 +name: obsolete occurence value +is_obsolete: true + +[Term] +id: PATO:0000425 +name: obsolete continual +subset: mpath_slim +is_obsolete: true + +[Term] +id: PATO:0000427 +name: recurrent +def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly." [thefreedictionary.com:thefreedictionary.com] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000428 ! sporadic + +[Term] +id: PATO:0000428 +name: sporadic +def: "A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances." [PATO:MAH, WordNet:WordNet] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000427 ! recurrent + +[Term] +id: PATO:0000430 +name: obsolete unique +is_obsolete: true + +[Term] +id: PATO:0000431 +name: obsolete odor value +is_obsolete: true + +[Term] +id: PATO:0000432 +name: obsolete parental type value +is_obsolete: true + +[Term] +id: PATO:0000433 +name: obsolete paternal +def: "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a father." [WordNet:WordNet] +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0000434 +name: obsolete maternal +def: "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a mother." [WordNet:WordNet] +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0000435 +name: obsolete pattern value +is_obsolete: true + +[Term] +id: PATO:0000436 +name: obsolete concrete +is_obsolete: true + +[Term] +id: PATO:0000437 +name: obsolete sleep pattern value +is_obsolete: true + +[Term] +id: PATO:0000438 +name: invariant +def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation." [Dictionary:http\://dictionary.reference.com/] +subset: value_slim +synonym: "constant" RELATED [] +synonym: "uniform" EXACT [] +is_a: PATO:0001303 ! variability +relationship: is_opposite_of PATO:0001227 ! variant + +[Term] +id: PATO:0000439 +name: obsolete perseverative +is_obsolete: true + +[Term] +id: PATO:0000440 +name: regular spatial pattern +def: "A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +relationship: is_opposite_of PATO:0000330 ! irregular spatial pattern + +[Term] +id: PATO:0000441 +name: repetitive +def: "A quality of a single process inhering in a bearer by virtue of the bearer's marked by tedious repetition." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000057 ! occurrence + +[Term] +id: PATO:0000442 +name: obsolete insomnia +def: "A sleep pattern quality inhering in a bearer by virtue of the bearer's inability to sleep." [WordNet:WordNet] +comment: Consider NBO:0000422. +subset: disposition_slim +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0000443 +name: obsolete narcolepsy +def: "A sleep pattern quality inhering in a bearer by virtue of the bearer's disrupted sleep during normal sleeping period; often accompanied by cataplexy, sleep paralysis." [] +comment: Consider NBO:0000423 +subset: disposition_slim +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0000444 +name: obsolete percentage value +is_obsolete: true + +[Term] +id: PATO:0000445 +name: obsolete relative percentage value +is_obsolete: true + +[Term] +id: PATO:0000446 +name: obsolete absolute percentage value +is_obsolete: true + +[Term] +id: PATO:0000447 +name: obsolete decreased percentage +is_obsolete: true + +[Term] +id: PATO:0000448 +name: obsolete high percentage +is_obsolete: true + +[Term] +id: PATO:0000449 +name: obsolete increased percentage +is_obsolete: true + +[Term] +id: PATO:0000450 +name: obsolete low percentage +is_obsolete: true + +[Term] +id: PATO:0000451 +name: obsolete pilosity value +is_obsolete: true + +[Term] +id: PATO:0000452 +name: obsolete relative pilosity value +is_obsolete: true + +[Term] +id: PATO:0000453 +name: glabrous +def: "A pilosity quality inhering in a bearer by virtue of the bearer's lack of hairs or bristles." [PATOC:CJM, PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "hairless" RELATED [] +is_a: PATO:0000066 ! pilosity +disjoint_from: PATO:0000454 ! hairy + +[Term] +id: PATO:0000454 +name: hairy +def: "A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000066 ! pilosity + +[Term] +id: PATO:0000455 +name: pubescent +def: "A maturity quality inhering in a bearer by virtue of the bearer's having arrived at the onset of puberty (the age at which sex glands become functional) but not yet fully mature." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0000456 +name: obsolete abstract +is_obsolete: true + +[Term] +id: PATO:0000457 +name: obsolete deviation(from_normal) value +is_obsolete: true + +[Term] +id: PATO:0000458 +name: obsolete presence value +is_obsolete: true + +[Term] +id: PATO:0000459 +name: obsolete relative quantity value +is_obsolete: true + +[Term] +id: PATO:0000460 +name: abnormal +def: "A quality inhering in a bearer by virtue of the bearer's deviation from normal or average." [PATOC:GVG] +subset: abnormal_slim +subset: mpath_slim +subset: value_slim +synonym: "aberrant" RELATED [] +synonym: "atypia" RELATED [] +synonym: "atypical" RELATED [] +synonym: "defective" RELATED [] +is_a: PATO:0000069 ! deviation(from_normal) +relationship: is_opposite_of PATO:0000461 ! normal + +[Term] +id: PATO:0000461 +name: normal +def: "A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average." [PATOC:GVG] +subset: abnormal_slim +subset: mpath_slim +subset: value_slim +synonym: "average" RELATED [] +is_a: PATO:0000068 ! qualitative +relationship: is_opposite_of PATO:0000460 ! abnormal + +[Term] +id: PATO:0000462 +name: absent +alt_id: PATO:0001996 +def: "A quality denoting the lack of an entity." [thefreedictionary.:thefreedictionary.] +comment: See documentation here: http://code.google.com/p/phenotype-ontologies/wiki/ModelingOfAbsence +subset: absent_slim +subset: mpath_slim +subset: value_slim +synonym: "absence" EXACT [] +synonym: "absent from organism" EXACT [] +is_a: PATO:0000070 ! amount +disjoint_from: PATO:0000467 ! present +relationship: is_opposite_of PATO:0000467 ! present +relationship: reciprocal_of PATO:0001558 ! lacking processual parts +relationship: reciprocal_of PATO:0002000 ! lacks all parts of type + +[Term] +id: PATO:0000463 +name: conspicuous +def: "A quality inhering in a bearer by virtue of being clearly visible." [thefreedictionary:thefreedictionary] +subset: mpath_slim +subset: value_slim +synonym: "distinct" RELATED [] +is_a: PATO:0001998 ! conspicuousness +relationship: is_opposite_of PATO:0000464 ! inconspicuous + +[Term] +id: PATO:0000464 +name: inconspicuous +def: "A quality inhering in a bearer by virtue of not being clearly visible." [thefreedictionary:thefreedictionary] +subset: mpath_slim +subset: value_slim +synonym: "faint" RELATED [] +is_a: PATO:0001998 ! conspicuousness +relationship: is_opposite_of PATO:0000463 ! conspicuous + +[Term] +id: PATO:0000465 +name: obsolete marked +is_obsolete: true + +[Term] +id: PATO:0000466 +name: obsolete none +is_obsolete: true + +[Term] +id: PATO:0000467 +name: present +def: "A quality inhering in a bearer by virtue of the bearer's existence." [PATOC:GVG] +subset: absent_slim +subset: value_slim +synonym: "present in organism" RELATED [] +is_a: PATO:0000070 ! amount +relationship: is_opposite_of PATO:0000462 ! absent + +[Term] +id: PATO:0000469 +name: obsolete high +is_obsolete: true + +[Term] +id: PATO:0000470 +name: increased amount +alt_id: PATO:0000420 +alt_id: PATO:0000650 +def: "An amount which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "accessory" RELATED [] +synonym: "increased" RELATED [] +synonym: "increased number" EXACT [] +synonym: "present in greater numbers in organism" EXACT [] +synonym: "supernumerary" EXACT [] +is_a: PATO:0000467 ! present +is_a: PATO:0002300 ! increased quality +intersection_of: PATO:0000070 ! amount +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001997 ! decreased amount + +[Term] +id: PATO:0000471 +name: obsolete low +is_obsolete: true + +[Term] +id: PATO:0000472 +name: obsolete quality value +is_obsolete: true + +[Term] +id: PATO:0000473 +name: obsolete relative_quality value +is_obsolete: true + +[Term] +id: PATO:0000474 +name: obsolete shattering value +is_obsolete: true + +[Term] +id: PATO:0000475 +name: obsolete threshability value +is_obsolete: true + +[Term] +id: PATO:0000476 +name: obsolete bad value +is_obsolete: true + +[Term] +id: PATO:0000477 +name: obsolete good value +is_obsolete: true + +[Term] +id: PATO:0000478 +name: obsolete poor value +is_obsolete: true + +[Term] +id: PATO:0000479 +name: obsolete regulation value +is_obsolete: true + +[Term] +id: PATO:0000480 +name: obsolete positive regulation +is_obsolete: true + +[Term] +id: PATO:0000481 +name: obsolete negative regulation +is_obsolete: true + +[Term] +id: PATO:0000482 +name: obsolete response value +is_obsolete: true + +[Term] +id: PATO:0000483 +name: obsolete tactile hyperresponsive +is_obsolete: true + +[Term] +id: PATO:0000484 +name: obsolete tactile hyporesponsive +is_obsolete: true + +[Term] +id: PATO:0000485 +name: obsolete mild response +is_obsolete: true + +[Term] +id: PATO:0000486 +name: obsolete moderate response +is_obsolete: true + +[Term] +id: PATO:0000487 +name: responsive to +def: "A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "responsive" EXACT [] +is_a: PATO:0000077 ! response to +disjoint_from: PATO:0000488 ! unresponsive to +relationship: is_opposite_of PATO:0000488 ! unresponsive to + +[Term] +id: PATO:0000488 +name: unresponsive to +def: "A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "unresponsive" EXACT [] +is_a: PATO:0000077 ! response to +relationship: is_opposite_of PATO:0000487 ! responsive to + +[Term] +id: PATO:0000489 +name: obsolete vigorous response +is_obsolete: true + +[Term] +id: PATO:0000490 +name: obsolete rhythym value +is_obsolete: true + +[Term] +id: PATO:0000491 +name: obsolete sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000492 +name: obsolete absolute rhythym value +is_obsolete: true + +[Term] +id: PATO:0000493 +name: obsolete amplitude value +is_obsolete: true + +[Term] +id: PATO:0000494 +name: obsolete period value +is_obsolete: true + +[Term] +id: PATO:0000495 +name: obsolete persistence value +is_obsolete: true + +[Term] +id: PATO:0000496 +name: obsolete phase value +is_obsolete: true + +[Term] +id: PATO:0000497 +name: obsolete relative rhythym value +is_obsolete: true + +[Term] +id: PATO:0000498 +name: increased duration +alt_id: PATO:0000715 +def: "A duration quality of a process which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "chronic" RELATED [] +synonym: "high time" EXACT [] +synonym: "increased period" EXACT [] +synonym: "increased time" EXACT [] +synonym: "prolonged period" RELATED [] +synonym: "slow time" RELATED [] +is_a: PATO:0001309 ! duration +is_a: PATO:0002304 ! increased process quality +intersection_of: PATO:0001309 ! duration +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000499 ! decreased duration + +[Term] +id: PATO:0000499 +name: decreased duration +alt_id: PATO:0000716 +def: "A duration quality of a process which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "decreased period" EXACT [] +synonym: "decreased time" EXACT [] +synonym: "fast time" RELATED [] +synonym: "low period" EXACT [] +synonym: "shortened period" EXACT [] +is_a: PATO:0001309 ! duration +is_a: PATO:0002302 ! decreased process quality +intersection_of: PATO:0001309 ! duration +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000498 ! increased duration + +[Term] +id: PATO:0000500 +name: advanced phase +def: "A phase which occurs earlier than the natural start time." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0000501 +name: dark phase +def: "A phase which occurs during dark cycle." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0000502 +name: delayed +def: "A quality of a process which starts later than the natural start time or the reference process." [PATOC:LC] +subset: value_slim +synonym: "late" RELATED [] +is_a: PATO:0002325 ! onset quality + +[Term] +id: PATO:0000503 +name: light phase +def: "A phase which occurs during the light cycle." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0000504 +name: arrhythmic +def: "A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000078 ! rhythm quality +relationship: is_opposite_of PATO:0000505 ! rhythmic + +[Term] +id: PATO:0000505 +name: rhythmic +def: "A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000078 ! rhythm quality +relationship: is_opposite_of PATO:0000504 ! arrhythmic + +[Term] +id: PATO:0000506 +name: obsolete absolute sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000507 +name: obsolete disease sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000508 +name: obsolete relative sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000509 +name: obsolete stress sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000510 +name: obsolete temperature sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000511 +name: obsolete absolute disease sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000512 +name: obsolete relative disease sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000513 +name: insensitive toward +def: "A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "insensitive" EXACT [] +synonym: "resistant" RELATED [] +is_a: PATO:0000085 ! sensitivity toward +relationship: is_opposite_of PATO:0000516 ! sensitive toward + +[Term] +id: PATO:0000514 +name: obsolete intolerant value +is_obsolete: true + +[Term] +id: PATO:0000515 +name: tolerant to +def: "A resistance quality inhering in a bearer by virtue of its disposition to endure or being insensitive to a stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "tolerant" EXACT [] +is_a: PATO:0001046 ! resistance to +disjoint_from: PATO:0001178 ! resistant to + +[Term] +id: PATO:0000516 +name: sensitive toward +def: "A quality inhering in a bearer by virtue of the bearer's having sensitivity toward an external stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "sensitive" EXACT [] +is_a: PATO:0000085 ! sensitivity toward +relationship: is_opposite_of PATO:0000513 ! insensitive toward + +[Term] +id: PATO:0000517 +name: obsolete abiotic stress sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000518 +name: obsolete chemical sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000519 +name: obsolete humidity sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000520 +name: obsolete radiation sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000521 +name: obsolete drug sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000522 +name: obsolete herbicide sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000523 +name: obsolete insecticide sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000524 +name: obsolete plant growth hormone sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000525 +name: obsolete soil composition sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000526 +name: obsolete absolute drug sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000527 +name: obsolete relative drug sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000528 +name: obsolete drug insensitive +is_obsolete: true + +[Term] +id: PATO:0000529 +name: obsolete drug sensitive +is_obsolete: true + +[Term] +id: PATO:0000530 +name: obsolete soil nutrient sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000531 +name: obsolete macronutrient sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000532 +name: obsolete micronutrient sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000533 +name: obsolete osmotic response sensitivity +is_obsolete: true + +[Term] +id: PATO:0000534 +name: obsolete p h sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000535 +name: obsolete salt sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000536 +name: obsolete water sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000537 +name: obsolete acid sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000538 +name: obsolete alkali sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000539 +name: obsolete drought sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000540 +name: obsolete flooding sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000541 +name: obsolete photosensitivity value +is_obsolete: true + +[Term] +id: PATO:0000542 +name: obsolete absolute photosensitivity value +is_obsolete: true + +[Term] +id: PATO:0000543 +name: obsolete light intensivity sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000544 +name: obsolete light_quality sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000545 +name: obsolete relative photosensitivity value +is_obsolete: true + +[Term] +id: PATO:0000546 +name: photoinsensitive +def: "A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "photoresistant" RELATED [] +is_a: PATO:0000927 ! photosensitivity +disjoint_from: PATO:0000547 ! photosensitive +relationship: is_opposite_of PATO:0000547 ! photosensitive + +[Term] +id: PATO:0000547 +name: photosensitive +def: "A photosensitivity quality inhering in a bearer by virtue of the bearer's exhibiting photosensitivity." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000927 ! photosensitivity +relationship: is_opposite_of PATO:0000546 ! photoinsensitive + +[Term] +id: PATO:0000548 +name: obsolete blue light sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000549 +name: obsolete far red light sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000550 +name: obsolete red light sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000551 +name: obsolete u v light sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000552 +name: obsolete absolute temperature sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000553 +name: obsolete relative temperature sensitivity value +is_obsolete: true + +[Term] +id: PATO:0000554 +name: obsolete cold sensitive +is_obsolete: true + +[Term] +id: PATO:0000555 +name: obsolete heat sensitive +is_obsolete: true + +[Term] +id: PATO:0000556 +name: obsolete thermoinsensitive +synonym: "thermoresistant" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000557 +name: obsolete thermosensitive +is_obsolete: true + +[Term] +id: PATO:0000558 +name: obsolete size value +is_obsolete: true + +[Term] +id: PATO:0000559 +name: obsolete absolute size value +is_obsolete: true + +[Term] +id: PATO:0000560 +name: obsolete height value +is_obsolete: true + +[Term] +id: PATO:0000561 +name: obsolete length value +is_obsolete: true + +[Term] +id: PATO:0000562 +name: obsolete mass value +is_obsolete: true + +[Term] +id: PATO:0000563 +name: obsolete relative size value +is_obsolete: true + +[Term] +id: PATO:0000564 +name: obsolete thickness value +is_obsolete: true + +[Term] +id: PATO:0000565 +name: obsolete volume value +is_obsolete: true + +[Term] +id: PATO:0000566 +name: obsolete width value +synonym: ":breadth" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000567 +name: obsolete absolute height value +is_obsolete: true + +[Term] +id: PATO:0000568 +name: obsolete relative height value +is_obsolete: true + +[Term] +id: PATO:0000569 +name: decreased height +def: "A height which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "short" RELATED [] +is_a: PATO:0000119 ! height +is_a: PATO:0000587 ! decreased size +intersection_of: PATO:0000119 ! height +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000570 ! increased height + +[Term] +id: PATO:0000570 +name: increased height +def: "A height which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "tall" RELATED [] +is_a: PATO:0000119 ! height +is_a: PATO:0000586 ! increased size +intersection_of: PATO:0000119 ! height +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000569 ! decreased height + +[Term] +id: PATO:0000571 +name: obsolete absolute length value +is_obsolete: true + +[Term] +id: PATO:0000572 +name: obsolete relative length value +is_obsolete: true + +[Term] +id: PATO:0000573 +name: increased length +def: "A length quality which is relatively large." [PATOC:GVG] +subset: value_slim +synonym: "long" EXACT [] +is_a: PATO:0000122 ! length +is_a: PATO:0000586 ! increased size +intersection_of: PATO:0000122 ! length +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000574 ! decreased length + +[Term] +id: PATO:0000574 +name: decreased length +def: "A length quality which is relatively small." [PATOC:GVG] +subset: value_slim +synonym: "short" EXACT [] +synonym: "shortened" RELATED [] +synonym: "stubby" RELATED [] +is_a: PATO:0000122 ! length +is_a: PATO:0000587 ! decreased size +intersection_of: PATO:0000122 ! length +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000573 ! increased length + +[Term] +id: PATO:0000575 +name: obsolete absolute mass value +is_obsolete: true + +[Term] +id: PATO:0000576 +name: obsolete relative mass value +is_obsolete: true + +[Term] +id: PATO:0000577 +name: obsolete weight value +is_obsolete: true + +[Term] +id: PATO:0000580 +name: obsolete absolute weight value +is_obsolete: true + +[Term] +id: PATO:0000581 +name: obsolete relative weight value +is_obsolete: true + +[Term] +id: PATO:0000582 +name: increased weight +def: "A weight which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "heavy" EXACT [] +synonym: "high weight" EXACT [] +is_a: PATO:0000128 ! weight +is_a: PATO:0002245 ! increased force +intersection_of: PATO:0000128 ! weight +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000583 ! decreased weight + +[Term] +id: PATO:0000583 +name: decreased weight +def: "A weight which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "light weight" EXACT [] +synonym: "low weight" EXACT [] +is_a: PATO:0000128 ! weight +is_a: PATO:0002246 ! decreased force +intersection_of: PATO:0000128 ! weight +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000582 ! increased weight + +[Term] +id: PATO:0000584 +name: hypertrophic +def: "An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ)." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +synonym: "hypertrophy" NARROW [] +is_a: PATO:0000595 ! increased volume +relationship: is_opposite_of PATO:0000585 ! hypotrophic + +[Term] +id: PATO:0000585 +name: hypotrophic +alt_id: PATO:0000412 +def: "A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ)." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +synonym: "shrunken" EXACT [] +is_a: PATO:0000596 ! decreased volume +relationship: is_opposite_of PATO:0000584 ! hypertrophic + +[Term] +id: PATO:0000586 +name: increased size +alt_id: PATO:0001202 +def: "A size quality which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "big" RELATED [] +synonym: "enlarged" RELATED [] +synonym: "expanded" RELATED [] +synonym: "great" RELATED [] +synonym: "large" RELATED [] +is_a: PATO:0000117 ! size +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000117 ! size +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000587 ! decreased size + +[Term] +id: PATO:0000587 +name: decreased size +def: "A size quality which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "hypoplasia" NARROW [] +synonym: "reduced" RELATED [] +synonym: "small" RELATED [] +synonym: "tiny" RELATED [] +synonym: "underdeveloped" NARROW [] +is_a: PATO:0000117 ! size +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000117 ! size +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000586 ! increased size + +[Term] +id: PATO:0000588 +name: vestigial +def: "A quality inhering in a bearer by virtue of the bearer's being a remnant structure from earlier development or evolution." [PATOC:MAH] +comment: May be part of an animal (such as an organ or bone) that is no longer used by the species and has therefore become smaller or less developed. +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000589 +name: obsolete absolute thickness value +is_obsolete: true + +[Term] +id: PATO:0000590 +name: obsolete relative thickness value +is_obsolete: true + +[Term] +id: PATO:0000591 +name: increased thickness +def: "A thickness which is relatively high." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "high thickness" EXACT [] +synonym: "stout" EXACT [] +synonym: "thick" RELATED [] +synonym: "thickened" EXACT [] +is_a: PATO:0000586 ! increased size +is_a: PATO:0000915 ! thickness +intersection_of: PATO:0000915 ! thickness +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000592 ! decreased thickness + +[Term] +id: PATO:0000592 +name: decreased thickness +def: "A thickness which is relatively low." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "low thickness" EXACT [] +synonym: "slender" RELATED [] +synonym: "thin" RELATED [] +is_a: PATO:0000587 ! decreased size +is_a: PATO:0000915 ! thickness +intersection_of: PATO:0000915 ! thickness +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000591 ! increased thickness + +[Term] +id: PATO:0000593 +name: obsolete absolute volume value +is_obsolete: true + +[Term] +id: PATO:0000594 +name: obsolete relative volume value +is_obsolete: true + +[Term] +id: PATO:0000595 +name: increased volume +def: "A volume which is relatively high." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "high volume" EXACT [] +synonym: "large volume" RELATED [] +is_a: PATO:0000586 ! increased size +is_a: PATO:0000918 ! volume +intersection_of: PATO:0000918 ! volume +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000596 ! decreased volume + +[Term] +id: PATO:0000596 +name: decreased volume +def: "A volume which is relatively low." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "low volume" EXACT [] +synonym: "small volume" RELATED [] +is_a: PATO:0000587 ! decreased size +is_a: PATO:0000918 ! volume +intersection_of: PATO:0000918 ! volume +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000595 ! increased volume + +[Term] +id: PATO:0000597 +name: obsolete absolute width value +is_obsolete: true + +[Term] +id: PATO:0000598 +name: obsolete relative width value +is_obsolete: true + +[Term] +id: PATO:0000599 +name: decreased width +def: "A width which is relatively small." [PATOC:GVG] +subset: value_slim +synonym: "narrow" RELATED [] +is_a: PATO:0000587 ! decreased size +is_a: PATO:0000921 ! width +intersection_of: PATO:0000921 ! width +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000600 ! increased width + +[Term] +id: PATO:0000600 +name: increased width +def: "A width which is relatively large." [PATOC:GVG] +subset: value_slim +synonym: "broad" RELATED [] +synonym: "wide" RELATED [] +synonym: "wide/broad" RELATED [] +is_a: PATO:0000586 ! increased size +is_a: PATO:0000921 ! width +intersection_of: PATO:0000921 ! width +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000599 ! decreased width + +[Term] +id: PATO:0000601 +name: obsolete spatial value +is_obsolete: true + +[Term] +id: PATO:0000602 +name: obsolete angle value +is_obsolete: true + +[Term] +id: PATO:0000603 +name: obsolete closure value +is_obsolete: true + +[Term] +id: PATO:0000604 +name: obsolete orientation value +is_obsolete: true + +[Term] +id: PATO:0000605 +name: obsolete placement value +synonym: "location" RELATED [] +synonym: "position" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000606 +name: obsolete absolute angle value +is_obsolete: true + +[Term] +id: PATO:0000607 +name: obsolete relative angle value +is_obsolete: true + +[Term] +id: PATO:0000608 +name: closed +def: "A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view." [answers.com:answers.com] +subset: value_slim +synonym: "blocked" RELATED [] +is_a: PATO:0000136 ! closure +disjoint_from: PATO:0000610 ! open +relationship: is_opposite_of PATO:0000610 ! open + +[Term] +id: PATO:0000609 +name: closure incomplete +def: "A morphological quality inhering in a bearer by virtue of the bearer's affording not completed blocked passage or view." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000610 ! open + +[Term] +id: PATO:0000610 +name: open +def: "A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view." [answers.com:answers.com] +subset: value_slim +is_a: PATO:0000136 ! closure +relationship: is_opposite_of PATO:0000608 ! closed + +[Term] +id: PATO:0000611 +name: obsolete absolute orientation value +is_obsolete: true + +[Term] +id: PATO:0000612 +name: obsolete relative orientation value +is_obsolete: true + +[Term] +id: PATO:0000613 +name: disoriented +def: "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000330 ! irregular spatial pattern +relationship: is_opposite_of PATO:0000614 ! oriented + +[Term] +id: PATO:0000614 +name: oriented +def: "A pattern where all the repeated elements are oriented in the same direction." [PATOC:MAH] +subset: value_slim +is_a: PATO:0000440 ! regular spatial pattern +relationship: is_opposite_of PATO:0000613 ! disoriented + +[Term] +id: PATO:0000615 +name: wholly anterioralized +def: "An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally anterior structures." [PATOC:GVG] +subset: value_slim +synonym: "anterioralized" RELATED [] +is_a: PATO:0030000 ! anterioralized + +[Term] +id: PATO:0000616 +name: asymmetrical +def: "A symmetry quality inhering in a bearer by virtue of the bearer's lacking symmetry." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "asymmetric" EXACT [] +synonym: "asymmetry" EXACT [] +is_a: PATO:0000965 ! symmetry + +[Term] +id: PATO:0000617 +name: bent +def: "A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length." [PATOC:MAH] +subset: value_slim +synonym: "angled" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000618 +name: bilateral +def: "A positional quality inhering in a bearer by virtue of the bearer's having two sides; two-sided." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000619 +name: crowded +def: "A positional quality inhering in a bearer by virtue of the bearer's being overfilled." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000140 ! position +relationship: is_opposite_of PATO:0000633 ! uncrowded + +[Term] +id: PATO:0000620 +name: wholly dorsalized +def: "A dorsalized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally dorsal structures." [PATOC:melissa] +subset: mpath_slim +subset: value_slim +synonym: "dorsalized" RELATED [] +is_a: PATO:0030001 ! dorsalized + +[Term] +id: PATO:0000622 +name: erect +def: "A positional quality inhering in a bearer by virtue of the bearer's being upright in position or posture." [WordNet:WordNet] +subset: value_slim +synonym: "upright" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000623 +name: exserted +def: "A quality inhering in a bearer by virtue of the bearer's protruding or projecting from the body." [sdvc:sdvc] +subset: value_slim +synonym: "prolapse" RELATED [] +synonym: "prolapsed" RELATED [] +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0000624 +name: inserted into +def: "A spatial quality inhering in a bearer by virtue of the bearer's becoming joined together with an additional entity." [PATOC:nw] +subset: relational_slim +subset: value_slim +synonym: "inserted" EXACT [] +synonym: "introduced into" RELATED [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000625 +name: inverted +def: "An oriented quality inhering in a bearer by virtue of the bearer's being reversed in position, order, or condition." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "backward" RELATED [] +synonym: "reversed" RELATED [] +is_a: PATO:0000614 ! oriented + +[Term] +id: PATO:0000626 +name: lateralized +def: "A positional quality inhering in a bearer by virtue of the bearer's being moved or displaced to one side so as to make lateral." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000627 +name: localized +def: "A spatial pattern quality inhering in a bearer by virtue of the bearer's being confined or restricted to a particular location." [WordNet:WordNet] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +synonym: "focal" EXACT [] +synonym: "localised" EXACT [] +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0000628 +name: mislocalised +alt_id: PATO:0000621 +def: "A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "ectopic" EXACT [] +synonym: "mislocalized" EXACT [] +is_a: PATO:0002181 ! displaced + +[Term] +id: PATO:0000629 +name: misrouted +def: "A positional quality inhering in a bearer by virtue of the bearer's having mistakenly taken course, way, or passage; ill-routed." [NDI:NDI] +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000630 +name: wholly posterioralized +def: "A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally posterior structures." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "posterioralized" RELATED [] +is_a: PATO:0030002 ! posterioralized + +[Term] +id: PATO:0000631 +name: prostrate +def: "A positional quality inhering in a bearer by virtue of the bearer's being stretched out and lying at full length along the ground." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0000632 +name: symmetrical +def: "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division by a longitudinal plane into similar halves." [PATOC:GVG] +comment: similar pattern in both halves +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "symmetric" EXACT [] +is_a: PATO:0000440 ! regular spatial pattern +is_a: PATO:0000965 ! symmetry + +[Term] +id: PATO:0000633 +name: uncrowded +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +relationship: is_opposite_of PATO:0000619 ! crowded + +[Term] +id: PATO:0000634 +name: unilateral +def: "A spatial pattern inhering in a bearer by virtue of the bearer's involvement of only one part or side." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0000635 +name: unlocalised +def: "A spatial pattern inhering in a bearer by virtue of the bearer's not being confined or restricted to a particular location." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0000636 +name: wholly ventralized +def: "A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally ventral structures." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "ventralized" RELATED [] +is_a: PATO:0030003 ! ventralized + +[Term] +id: PATO:0000637 +name: obsolete structure value +is_obsolete: true + +[Term] +id: PATO:0000638 +name: apoptotic +def: "A structural quality inhering in a bearer by virtue of the bearer's consisting of blebbing of the nucleus and DNA fragmentation due to the cell undergoing a specific form of programmed cell death termed apoptosis." [PATOC:GVG] +subset: value_slim +xref: GO:0006915 +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000639 +name: degenerate +def: "A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process." [PATOC:mb, PATOC:PortlandMeetingFeb2015] +subset: mpath_slim +subset: value_slim +synonym: "degeneration" NARROW [] +is_a: PATO:0002037 ! degeneration +disjoint_from: PATO:0001623 ! atrophied +disjoint_from: PATO:0002038 ! non-degenerate +relationship: has_part PATO:0000585 ! hypotrophic +relationship: is_opposite_of PATO:0002038 ! non-degenerate + +[Term] +id: PATO:0000640 +name: dysplastic +def: "A structural quality inhering in a bearer by virtue of the bearer's exhibiting an alteration in size, shape or organization of its constituent cells." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +synonym: "dysplasia" NARROW [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000641 +name: obsolete deposition defective +is_obsolete: true + +[Term] +id: PATO:0000642 +name: fused with +def: "A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "coalesced" RELATED [] +synonym: "fused" EXACT [] +synonym: "fused to" EXACT [] +synonym: "joined with" RELATED [] +synonym: "merged with" RELATED [] +is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0000651 ! unfused from + +[Term] +id: PATO:0000643 +name: herniated +def: "A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it." [spinalstenosis:spinalstenosis] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0000644 +name: hyperplastic +alt_id: PATO:0000943 +def: "A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells." [Wikipedia:http\://en.wikipedia.org/wiki/Hyperplastic] +subset: mpath_slim +subset: value_slim +synonym: "hyperplasia" EXACT [] +synonym: "overdeveloped" RELATED [] +is_a: PATO:0000586 ! increased size +relationship: is_opposite_of PATO:0000645 ! hypoplastic + +[Term] +id: PATO:0000645 +name: hypoplastic +alt_id: PATO:0000942 +def: "A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "hypoplasia" EXACT [] +synonym: "underdeveloped" RELATED [] +is_a: PATO:0000587 ! decreased size +is_a: PATO:0002290 ! aplastic/hypoplastic +relationship: is_opposite_of PATO:0000644 ! hyperplastic + +[Term] +id: PATO:0000646 +name: malformed +def: "A morphological quality inhering in a bearer by virtue of the bearer's being distorted during formation." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +synonym: "malformation" NARROW [] +is_a: PATO:0001617 ! deformed + +[Term] +id: PATO:0000647 +name: necrotic +def: "A structural quality inhering in a bearer by virtue of the bearer's undergoing unprogrammed cell death." [Wikipedia:http\://en.wikipedia.org/wiki/Necrotic] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000648 +name: obstructed +def: "A morphological quality inhering in a bearer by virtue of the bearer's being blocked or filled with obstacles or an obstacle." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000608 ! closed + +[Term] +id: PATO:0000651 +name: unfused from +def: "A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity." [PATOC:nw] +subset: relational_slim +subset: value_slim +synonym: "unfused" EXACT [] +is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0000642 ! fused with + +[Term] +id: PATO:0000652 +name: obsolete substance value +is_obsolete: true + +[Term] +id: PATO:0000653 +name: obsolete addictive substance value +is_obsolete: true + +[Term] +id: PATO:0000654 +name: obsolete alcochol value +is_obsolete: true + +[Term] +id: PATO:0000655 +name: obsolete amphetamine value +is_obsolete: true + +[Term] +id: PATO:0000656 +name: obsolete time_quantity +is_obsolete: true + +[Term] +id: PATO:0000657 +name: obsolete length_quantity +is_obsolete: true + +[Term] +id: PATO:0000658 +name: obsolete metamphetamine value +is_obsolete: true + +[Term] +id: PATO:0000659 +name: obsolete temparature_quantity +is_obsolete: true + +[Term] +id: PATO:0000660 +name: obsolete angle_quantity +is_obsolete: true + +[Term] +id: PATO:0000661 +name: obsolete solid substance value +is_obsolete: true + +[Term] +id: PATO:0000662 +name: obsolete volume_quantity +is_obsolete: true + +[Term] +id: PATO:0000663 +name: obsolete occurrent +is_obsolete: true + +[Term] +id: PATO:0000664 +name: obsolete substance_quantity +is_obsolete: true + +[Term] +id: PATO:0000665 +name: high brightness +def: "A color brightness which is relatively high." [PATOC:MAH] +subset: value_slim +synonym: "light" EXACT [] +is_a: PATO:0000016 ! color brightness +relationship: is_opposite_of PATO:0000327 ! low brightness + +[Term] +id: PATO:0000666 +name: obsolete energy_quantity +is_obsolete: true + +[Term] +id: PATO:0000667 +name: obsolete liquid substance value +is_obsolete: true + +[Term] +id: PATO:0000668 +name: obsolete mass_quantity +is_obsolete: true + +[Term] +id: PATO:0000669 +name: obsolete concentration_unit +is_obsolete: true + +[Term] +id: PATO:0000670 +name: obsolete saccharin versus water value +is_obsolete: true + +[Term] +id: PATO:0000671 +name: obsolete water value +is_obsolete: true + +[Term] +id: PATO:0000672 +name: obsolete unit +is_obsolete: true + +[Term] +id: PATO:0000673 +name: obsolete temperature value +is_obsolete: true + +[Term] +id: PATO:0000674 +name: obsolete absolute temperature value +is_obsolete: true + +[Term] +id: PATO:0000675 +name: obsolete body temperature value +is_obsolete: true + +[Term] +id: PATO:0000676 +name: obsolete relative temperature value +is_obsolete: true + +[Term] +id: PATO:0000679 +name: obsolete temporal value +is_obsolete: true + +[Term] +id: PATO:0000680 +name: obsolete absolute temporal value +is_obsolete: true + +[Term] +id: PATO:0000681 +name: obsolete incidence value +is_obsolete: true + +[Term] +id: PATO:0000682 +name: obsolete rate value +is_obsolete: true + +[Term] +id: PATO:0000683 +name: obsolete relative temporal value +is_obsolete: true + +[Term] +id: PATO:0000684 +name: obsolete absolute incidence value +is_obsolete: true + +[Term] +id: PATO:0000685 +name: obsolete relative incidence value +is_obsolete: true + +[Term] +id: PATO:0000686 +name: obsolete absolute rate value +is_obsolete: true + +[Term] +id: PATO:0000687 +name: obsolete relative rate value +is_obsolete: true + +[Term] +id: PATO:0000688 +name: asynchronous +def: "A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000695 ! synchronous + +[Term] +id: PATO:0000689 +name: continuous +alt_id: PATO:0000429 +def: "A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +synonym: "uninterrupted" EXACT [] +is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000690 ! discontinuous + +[Term] +id: PATO:0000690 +name: discontinuous +alt_id: PATO:0000426 +def: "A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +synonym: "intermittent" RELATED [] +synonym: "interrupted" EXACT [] +is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000689 ! continuous + +[Term] +id: PATO:0000692 +name: heterochronic +def: "A quality of a single process inhering in a bearer by virtue of the bearer's origin or development at an unusual time or out of the regular sequence." [answers.com:answers.com] +subset: value_slim +is_a: PATO:0000057 ! occurrence + +[Term] +id: PATO:0000693 +name: obsolete late +is_obsolete: true + +[Term] +id: PATO:0000694 +name: premature +alt_id: PATO:0000691 +alt_id: PATO:0002086 +def: "A quality of a process which starts earlier than the natural start time or the reference process." [PATO:LC] +subset: value_slim +synonym: "advanced" EXACT [] +synonym: "early" RELATED [] +synonym: "precocious" RELATED [] +is_a: PATO:0002325 ! onset quality + +[Term] +id: PATO:0000695 +name: synchronous +def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000688 ! asynchronous + +[Term] +id: PATO:0000696 +name: obsolete texture value +is_obsolete: true + +[Term] +id: PATO:0000697 +name: obsolete relative texture value +is_obsolete: true + +[Term] +id: PATO:0000698 +name: obsolete floury +is_obsolete: true + +[Term] +id: PATO:0000699 +name: obsolete glutinous +is_obsolete: true + +[Term] +id: PATO:0000700 +name: rough +alt_id: PATO:0001616 +def: "A texture quality inhering in a bearer by virtue of the bearer's irregular surface." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "coarse" EXACT [] +is_a: PATO:0000150 ! texture +relationship: is_opposite_of PATO:0000701 ! smooth + +[Term] +id: PATO:0000701 +name: smooth +def: "A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000150 ! texture +relationship: is_opposite_of PATO:0000700 ! rough + +[Term] +id: PATO:0000702 +name: obsolete threshold value +is_obsolete: true + +[Term] +id: PATO:0000703 +name: obsolete absolute threshold value +is_obsolete: true + +[Term] +id: PATO:0000704 +name: obsolete pain threshold value +is_obsolete: true + +[Term] +id: PATO:0000705 +name: obsolete relative threshold value +is_obsolete: true + +[Term] +id: PATO:0000706 +name: increased threshold +alt_id: PATO:0000709 +def: "A threshold which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high threshold" EXACT [] +is_a: PATO:0000152 ! threshold +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000152 ! threshold +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000708 ! decreased threshold + +[Term] +id: PATO:0000708 +name: decreased threshold +alt_id: PATO:0000707 +def: "A threshold which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "low threshold" EXACT [] +is_a: PATO:0000152 ! threshold +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000152 ! threshold +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000706 ! increased threshold + +[Term] +id: PATO:0000710 +name: obsolete time value +is_obsolete: true + +[Term] +id: PATO:0000711 +name: obsolete absolute time value +is_obsolete: true + +[Term] +id: PATO:0000712 +name: obsolete bouts value +is_obsolete: true + +[Term] +id: PATO:0000713 +name: obsolete relative time value +is_obsolete: true + +[Term] +id: PATO:0000714 +name: obsolete latency value +is_obsolete: true + +[Term] +id: PATO:0000717 +name: obsolete viability value +is_obsolete: true + +[Term] +id: PATO:0000718 +name: lethal (sensu genetics) +def: "A viability quality inhering in a population by virtue of the bearer's long term survival inability." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0000719 +name: viable +def: "A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0000720 +name: obsolete yield value +is_obsolete: true + +[Term] +id: PATO:0000721 +name: obsolete absolute yield value +is_obsolete: true + +[Term] +id: PATO:0000722 +name: obsolete relative yield value +is_obsolete: true + +[Term] +id: PATO:0000723 +name: obsolete high yield +is_obsolete: true + +[Term] +id: PATO:0000724 +name: obsolete low yield +is_obsolete: true + +[Term] +id: PATO:0000725 +name: obsolete function value +is_obsolete: true + +[Term] +id: PATO:0000726 +name: obsolete autonomic function value +is_obsolete: true + +[Term] +id: PATO:0000727 +name: obsolete behavioral function value +is_obsolete: true + +[Term] +id: PATO:0000728 +name: obsolete metabolic function value +is_obsolete: true + +[Term] +id: PATO:0000729 +name: obsolete physiological function value +is_obsolete: true + +[Term] +id: PATO:0000730 +name: obsolete relative function value +is_obsolete: true + +[Term] +id: PATO:0000731 +name: obsolete body position value +is_obsolete: true + +[Term] +id: PATO:0000732 +name: obsolete body tone value +is_obsolete: true + +[Term] +id: PATO:0000733 +name: obsolete piloerection value +is_obsolete: true + +[Term] +id: PATO:0000734 +name: obsolete abdominal tone value +is_obsolete: true + +[Term] +id: PATO:0000735 +name: obsolete limb tone value +is_obsolete: true + +[Term] +id: PATO:0000736 +name: obsolete dysfunctional value +is_obsolete: true + +[Term] +id: PATO:0000737 +name: obsolete functional value +is_obsolete: true + +[Term] +id: PATO:0000738 +name: obsolete enzyme function value +is_obsolete: true + +[Term] +id: PATO:0000739 +name: obsolete absolute enzyme function value +is_obsolete: true + +[Term] +id: PATO:0000740 +name: obsolete relative enzyme function value +is_obsolete: true + +[Term] +id: PATO:0000741 +name: obsolete high enzyme function value +is_obsolete: true + +[Term] +id: PATO:0000742 +name: obsolete low enzyme function value +is_obsolete: true + +[Term] +id: PATO:0000743 +name: obsolete arousal value +is_obsolete: true + +[Term] +id: PATO:0000744 +name: obsolete balance value +is_obsolete: true + +[Term] +id: PATO:0000745 +name: obsolete behavioral quality value +is_obsolete: true + +[Term] +id: PATO:0000746 +name: obsolete consumption value +is_obsolete: true + +[Term] +id: PATO:0000747 +name: obsolete coordination value +is_obsolete: true + +[Term] +id: PATO:0000748 +name: obsolete discrimination value +is_obsolete: true + +[Term] +id: PATO:0000749 +name: obsolete gait value +is_obsolete: true + +[Term] +id: PATO:0000750 +name: obsolete learning and memory value +is_obsolete: true + +[Term] +id: PATO:0000751 +name: obsolete locomotor activity value +is_obsolete: true + +[Term] +id: PATO:0000752 +name: obsolete mating value +is_obsolete: true + +[Term] +id: PATO:0000753 +name: obsolete spontaneous activity value +is_obsolete: true + +[Term] +id: PATO:0000754 +name: obsolete startle response +is_obsolete: true + +[Term] +id: PATO:0000755 +name: obsolete vocalization value +is_obsolete: true + +[Term] +id: PATO:0000756 +name: obsolete transfer arousal value +is_obsolete: true + +[Term] +id: PATO:0000757 +name: balanced +def: "A balance quality inhering in a bearer by virtue of the bearer's having balance." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000185 ! balance +disjoint_from: PATO:0000758 ! unbalanced +relationship: is_opposite_of PATO:0000758 ! unbalanced + +[Term] +id: PATO:0000758 +name: unbalanced +def: "A balance quality inhering in a bearer by virtue of the bearer's lacking balance." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000185 ! balance +relationship: is_opposite_of PATO:0000757 ! balanced + +[Term] +id: PATO:0000759 +name: bang sensitive +def: "A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting paralytic behaviour when subjected to mechanical shock." [PATOC:flybase] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000186 ! behavioral quality +relationship: has_part PATO:0000763 ! paralysed + +[Term] +id: PATO:0000760 +name: increased behavioural activity +def: "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity." [PATOC:GVG] +subset: value_slim +synonym: "hyperactive" EXACT [] +is_a: PATO:0001707 ! behavioural active +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001707 ! behavioural active +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000761 ! decreased behavioural activity + +[Term] +id: PATO:0000761 +name: decreased behavioural activity +def: "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity." [PATOC:GVG] +subset: value_slim +synonym: "hypoactive" EXACT [] +is_a: PATO:0001707 ! behavioural active +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001707 ! behavioural active +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000760 ! increased behavioural activity + +[Term] +id: PATO:0000762 +name: obsolete impaired +def: "Diminished, damaged, or weakened." [answers.com:answers.com] +subset: value_slim +is_obsolete: true +consider: PATO:0001624 + +[Term] +id: PATO:0000763 +name: paralysed +def: "A behavioral quality inhering in a bearer by virtue of the bearer's being affected by loss of the ability to move a body part." [PATOC:GVG] +subset: value_slim +synonym: "palsy" NARROW [] +is_a: PATO:0002076 ! movement behavioral quality + +[Term] +id: PATO:0000764 +name: passive +def: "A behavioral quality inhering in a bearer by virtue of the bearer's receiving or being subjected to an action without responding or initiating an action in return." [www.answers.com:www.answers.com] +subset: value_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0000765 +name: obsolete absolute consumption value +is_obsolete: true + +[Term] +id: PATO:0000766 +name: obsolete relative consumption value +is_obsolete: true + +[Term] +id: PATO:0000767 +name: obsolete increased consumption +def: "A consumption which is relatively high." [PATOC:GVG] +comment: Use GO:0007631 +subset: relational_slim +subset: value_slim +synonym: "high consumption" EXACT [] +synonym: "increased propensity to consume" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000768 +name: obsolete decreased consumption +def: "A consumption which is relatively low." [PATOC:GVG] +comment: Use GO:0007631 +subset: relational_slim +subset: value_slim +synonym: "decreased propensity to consume" RELATED [] +synonym: "low consumption" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0000769 +name: coordinated +def: "A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000188 ! coordination +disjoint_from: PATO:0000770 ! uncoordinated +relationship: is_opposite_of PATO:0000770 ! uncoordinated + +[Term] +id: PATO:0000770 +name: uncoordinated +def: "A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000188 ! coordination +relationship: is_opposite_of PATO:0000769 ! coordinated + +[Term] +id: PATO:0000771 +name: aversion +def: "A preference quality in a bearer by virtue of the bearer's disliking a perceived stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000773 ! preference +disjoint_from: PATO:0000772 ! indifference + +[Term] +id: PATO:0000772 +name: indifference +def: "A preference quality in a bearer by virtue of the bearer's having no preference to a perceived stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000773 ! preference + +[Term] +id: PATO:0000773 +name: preference +def: "A discrimination quality in a bearer by virtue of the bearer's liking a perceived stimulus." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0000189 ! discrimination + +[Term] +id: PATO:0000774 +name: obsolete bizarre gate +is_obsolete: true + +[Term] +id: PATO:0000775 +name: obsolete learning value +is_obsolete: true + +[Term] +id: PATO:0000776 +name: obsolete memory value +is_obsolete: true + +[Term] +id: PATO:0000777 +name: obsolete long term memory value +is_obsolete: true + +[Term] +id: PATO:0000778 +name: obsolete short term memory value +is_obsolete: true + +[Term] +id: PATO:0000779 +name: obsolete absolute locomotor activity value +is_obsolete: true + +[Term] +id: PATO:0000780 +name: obsolete relative locomotor activity value +is_obsolete: true + +[Term] +id: PATO:0000781 +name: obsolete circulatory function value +is_obsolete: true + +[Term] +id: PATO:0000782 +name: obsolete defensive function value +is_obsolete: true + +[Term] +id: PATO:0000783 +name: obsolete digestive function value +is_obsolete: true + +[Term] +id: PATO:0000784 +name: obsolete excretory function value +is_obsolete: true + +[Term] +id: PATO:0000785 +name: obsolete muscle function value +is_obsolete: true + +[Term] +id: PATO:0000786 +name: obsolete neural function value +is_obsolete: true + +[Term] +id: PATO:0000787 +name: obsolete neurobehavioral function value +is_obsolete: true + +[Term] +id: PATO:0000788 +name: obsolete reproductive function value +is_obsolete: true + +[Term] +id: PATO:0000789 +name: obsolete respiratory function value +is_obsolete: true + +[Term] +id: PATO:0000790 +name: obsolete heart rate value +is_obsolete: true + +[Term] +id: PATO:0000791 +name: obsolete immune function value +is_obsolete: true + +[Term] +id: PATO:0000792 +name: obsolete repair function value +is_obsolete: true + +[Term] +id: PATO:0000793 +name: obsolete immubocompetent value +is_obsolete: true + +[Term] +id: PATO:0000794 +name: obsolete immunodeficient value +is_obsolete: true + +[Term] +id: PATO:0000795 +name: obsolete healing value +is_obsolete: true + +[Term] +id: PATO:0000796 +name: obsolete regeneration value +is_obsolete: true + +[Term] +id: PATO:0000797 +name: obsolete urination value +is_obsolete: true + +[Term] +id: PATO:0000798 +name: obsolete defecation value +is_obsolete: true + +[Term] +id: PATO:0000799 +name: obsolete muscle elevation value +is_obsolete: true + +[Term] +id: PATO:0000800 +name: obsolete muscle strength value +is_obsolete: true + +[Term] +id: PATO:0000801 +name: obsolete motor function value +is_obsolete: true + +[Term] +id: PATO:0000802 +name: obsolete sensory function value +is_obsolete: true + +[Term] +id: PATO:0000803 +name: obsolete tactile response value +is_obsolete: true + +[Term] +id: PATO:0000804 +name: obsolete motor performance value +is_obsolete: true + +[Term] +id: PATO:0000805 +name: obsolete auditory value +is_obsolete: true + +[Term] +id: PATO:0000806 +name: obsolete olfactory value +is_obsolete: true + +[Term] +id: PATO:0000807 +name: obsolete proprioreception value +is_obsolete: true + +[Term] +id: PATO:0000808 +name: obsolete reflex value +is_obsolete: true + +[Term] +id: PATO:0000809 +name: obsolete taste value +is_obsolete: true + +[Term] +id: PATO:0000810 +name: obsolete touch value +is_obsolete: true + +[Term] +id: PATO:0000811 +name: obsolete visual value +is_obsolete: true + +[Term] +id: PATO:0000812 +name: obsolete odor acuity value +is_obsolete: true + +[Term] +id: PATO:0000813 +name: obsolete odor type value +is_obsolete: true + +[Term] +id: PATO:0000814 +name: obsolete taste acuity value +is_obsolete: true + +[Term] +id: PATO:0000815 +name: obsolete absolute odor acuity value +is_obsolete: true + +[Term] +id: PATO:0000816 +name: obsolete relative odor acuity value +is_obsolete: true + +[Term] +id: PATO:0000817 +name: obsolete anosmia +is_obsolete: true + +[Term] +id: PATO:0000818 +name: obsolete concentration_quantity +is_obsolete: true + +[Term] +id: PATO:0000819 +name: obsolete quantity +is_obsolete: true + +[Term] +id: PATO:0000820 +name: obsolete absolute taste acuity value +is_obsolete: true + +[Term] +id: PATO:0000821 +name: obsolete relative taste acuity value +is_obsolete: true + +[Term] +id: PATO:0000822 +name: obsolete taste type value +is_obsolete: true + +[Term] +id: PATO:0000823 +name: obsolete quinine taste +is_obsolete: true + +[Term] +id: PATO:0000824 +name: obsolete water taste +is_obsolete: true + +[Term] +id: PATO:0000825 +name: obsolete visual ability value +is_obsolete: true + +[Term] +id: PATO:0000826 +name: obsolete visual acuity value +is_obsolete: true + +[Term] +id: PATO:0000827 +name: obsolete visual threshold value +is_obsolete: true + +[Term] +id: PATO:0000828 +name: obsolete visual placing value +is_obsolete: true + +[Term] +id: PATO:0000829 +name: obsolete absolute visual ability value +is_obsolete: true + +[Term] +id: PATO:0000830 +name: obsolete relative visual ability value +is_obsolete: true + +[Term] +id: PATO:0000831 +name: obsolete absolute visual acuity value +is_obsolete: true + +[Term] +id: PATO:0000832 +name: obsolete relative visual acuity value +is_obsolete: true + +[Term] +id: PATO:0000833 +name: obsolete absolute visual threshold value +is_obsolete: true + +[Term] +id: PATO:0000834 +name: obsolete relative visual threshold value +is_obsolete: true + +[Term] +id: PATO:0000835 +name: obsolete auditory acuity value +is_obsolete: true + +[Term] +id: PATO:0000836 +name: obsolete auditory ability value +is_obsolete: true + +[Term] +id: PATO:0000837 +name: obsolete auditory threshold value +is_obsolete: true + +[Term] +id: PATO:0000838 +name: obsolete absolute auditory ability value +is_obsolete: true + +[Term] +id: PATO:0000839 +name: obsolete relative auditory ability value +is_obsolete: true + +[Term] +id: PATO:0000840 +name: obsolete absolute auditory acuity value +is_obsolete: true + +[Term] +id: PATO:0000841 +name: obsolete relative auditory acuity value +is_obsolete: true + +[Term] +id: PATO:0000842 +name: obsolete absolute auditory threshold value +is_obsolete: true + +[Term] +id: PATO:0000843 +name: obsolete relative auditory threshold value +is_obsolete: true + +[Term] +id: PATO:0000844 +name: obsolete auditory acuity +is_obsolete: true + +[Term] +id: PATO:0000845 +name: obsolete auditory ability +is_obsolete: true + +[Term] +id: PATO:0000846 +name: obsolete auditory threshold +is_obsolete: true + +[Term] +id: PATO:0000847 +name: obsolete absolute auditory acuity +is_obsolete: true + +[Term] +id: PATO:0000848 +name: obsolete relative auditory acuity +is_obsolete: true + +[Term] +id: PATO:0000849 +name: obsolete absolute auditory ability +is_obsolete: true + +[Term] +id: PATO:0000850 +name: obsolete relative auditory ability +is_obsolete: true + +[Term] +id: PATO:0000851 +name: obsolete absolute auditory threshold +is_obsolete: true + +[Term] +id: PATO:0000852 +name: obsolete relative auditory threshold +is_obsolete: true + +[Term] +id: PATO:0000853 +name: obsolete blinking reflex value +is_obsolete: true + +[Term] +id: PATO:0000854 +name: obsolete contact righting reflex value +is_obsolete: true + +[Term] +id: PATO:0000855 +name: obsolete corneal reflex value +is_obsolete: true + +[Term] +id: PATO:0000856 +name: obsolete flinch reflex value +is_obsolete: true + +[Term] +id: PATO:0000857 +name: obsolete lordosis reflex value +is_obsolete: true + +[Term] +id: PATO:0000858 +name: obsolete ocular reflex value +is_obsolete: true + +[Term] +id: PATO:0000859 +name: obsolete pinna reflex value +is_obsolete: true + +[Term] +id: PATO:0000860 +name: obsolete postural reflex value +is_obsolete: true + +[Term] +id: PATO:0000861 +name: obsolete proboscis extension reflex value +is_obsolete: true + +[Term] +id: PATO:0000862 +name: obsolete pupillary reflex value +is_obsolete: true + +[Term] +id: PATO:0000863 +name: obsolete righting reflex value +is_obsolete: true + +[Term] +id: PATO:0000864 +name: obsolete spinal reflex value +is_obsolete: true + +[Term] +id: PATO:0000865 +name: obsolete startle reflex value +is_obsolete: true + +[Term] +id: PATO:0000866 +name: obsolete suckling reflex value +is_obsolete: true + +[Term] +id: PATO:0000867 +name: obsolete swallowing reflex value +is_obsolete: true + +[Term] +id: PATO:0000868 +name: obsolete vibrissae reflex value +is_obsolete: true + +[Term] +id: PATO:0000869 +name: obsolete prepulse inhibition value +is_obsolete: true + +[Term] +id: PATO:0000870 +name: obsolete relative neurobehavioral function value +is_obsolete: true + +[Term] +id: PATO:0000871 +name: obsolete aggressive +is_obsolete: true + +[Term] +id: PATO:0000872 +name: obsolete anxious +is_obsolete: true + +[Term] +id: PATO:0000873 +name: obsolete cataleptic +is_obsolete: true + +[Term] +id: PATO:0000874 +name: obsolete fearful +is_obsolete: true + +[Term] +id: PATO:0000875 +name: obsolete irritable +is_obsolete: true + +[Term] +id: PATO:0000876 +name: obsolete respiratory rate value +is_obsolete: true + +[Term] +id: PATO:0000877 +name: obsolete absolute respiratory rate value +is_obsolete: true + +[Term] +id: PATO:0000878 +name: obsolete relative respiratory rate value +is_obsolete: true + +[Term] +id: PATO:0000879 +name: obsolete fecundity value +is_obsolete: true + +[Term] +id: PATO:0000880 +name: obsolete fertility value +is_obsolete: true + +[Term] +id: PATO:0000881 +name: obsolete gestational period value +is_obsolete: true + +[Term] +id: PATO:0000882 +name: obsolete litter size value +is_obsolete: true + +[Term] +id: PATO:0000883 +name: obsolete female fertility value +is_obsolete: true + +[Term] +id: PATO:0000884 +name: obsolete hybrid fertility value +is_obsolete: true + +[Term] +id: PATO:0000885 +name: obsolete male fertility value +is_obsolete: true + +[Term] +id: PATO:0000886 +name: obsolete absolute litter size value +is_obsolete: true + +[Term] +id: PATO:0000887 +name: obsolete relative litter size value +is_obsolete: true + +[Term] +id: PATO:0000888 +name: female fertile +def: "A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000277 ! female fertility +disjoint_from: PATO:0000892 ! female sterile +relationship: is_opposite_of PATO:0000892 ! female sterile + +[Term] +id: PATO:0000889 +name: obsolete cytoplasmic male sterility value +is_obsolete: true + +[Term] +id: PATO:0000890 +name: male sterile +def: "A male fertility quality inhering in a male by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "male infertile" RELATED [] +is_a: PATO:0000956 ! sterile +disjoint_from: PATO:0000891 ! male fertile +relationship: is_opposite_of PATO:0000891 ! male fertile + +[Term] +id: PATO:0000891 +name: male fertile +def: "A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000279 ! male fertility +relationship: is_opposite_of PATO:0000890 ! male sterile + +[Term] +id: PATO:0000892 +name: female sterile +def: "A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "female infertile" RELATED [] +is_a: PATO:0000956 ! sterile +relationship: is_opposite_of PATO:0000888 ! female fertile + +[Term] +id: PATO:0000893 +name: obsolete backcross fertility value +is_obsolete: true + +[Term] +id: PATO:0000894 +name: obsolete cytoplasmic sterility value +is_obsolete: true + +[Term] +id: PATO:0000895 +name: obsolete f1 fertility value +is_obsolete: true + +[Term] +id: PATO:0000896 +name: obsolete f2 fertility value +is_obsolete: true + +[Term] +id: PATO:0000897 +name: obsolete germ line dependent fertility value +is_obsolete: true + +[Term] +id: PATO:0000898 +name: obsolete intercross fertility value +is_obsolete: true + +[Term] +id: PATO:0000899 +name: obsolete soma dependent fertility value +is_obsolete: true + +[Term] +id: PATO:0000900 +name: obsolete backcross fertile +is_obsolete: true + +[Term] +id: PATO:0000901 +name: obsolete backcross sterile +synonym: "backcross infertile" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000902 +name: obsolete chinsurah boro type value +is_obsolete: true + +[Term] +id: PATO:0000903 +name: obsolete cms-hl type value +is_obsolete: true + +[Term] +id: PATO:0000904 +name: obsolete wild abortive value +is_obsolete: true + +[Term] +id: PATO:0000905 +name: obsolete f1 fertile +is_obsolete: true + +[Term] +id: PATO:0000906 +name: obsolete f1 sterile +synonym: "F1 infertile" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000907 +name: obsolete f2 fertile +is_obsolete: true + +[Term] +id: PATO:0000908 +name: obsolete f2 sterile +synonym: "F2 infertile" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000909 +name: obsolete intercross fertile +is_obsolete: true + +[Term] +id: PATO:0000910 +name: obsolete intercross sterile +synonym: "intercross infertile" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0000911 +name: decreased rate +def: "A rate which is relatively low." [PATO:GVG] +subset: mpath_slim +subset: value_slim +synonym: "slow rate" EXACT [] +is_a: PATO:0000161 ! rate +is_a: PATO:0002302 ! decreased process quality +intersection_of: PATO:0000161 ! rate +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000912 ! increased rate + +[Term] +id: PATO:0000912 +name: increased rate +def: "A rate which is relatively high." [PATO:GVG] +subset: mpath_slim +subset: value_slim +synonym: "fast rate" EXACT [] +synonym: "high rate" EXACT [] +is_a: PATO:0000161 ! rate +is_a: PATO:0002304 ! increased process quality +intersection_of: PATO:0000161 ! rate +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000911 ! decreased rate + +[Term] +id: PATO:0000913 +name: obsolete qualitative value +is_obsolete: true + +[Term] +id: PATO:0000914 +name: obsolete continuant +is_obsolete: true + +[Term] +id: PATO:0000915 +name: thickness +def: "A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0000916 +name: obsolete absolute thickness +is_obsolete: true + +[Term] +id: PATO:0000917 +name: obsolete relative thickness +is_obsolete: true + +[Term] +id: PATO:0000918 +name: volume +def: "A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies." [PATOC:GVG] +subset: attribute_slim +subset: mpath_slim +subset: scalar_slim +is_a: PATO:0001710 ! 3-D extent + +[Term] +id: PATO:0000919 +name: obsolete absolute volume +is_obsolete: true + +[Term] +id: PATO:0000920 +name: obsolete relative volume +is_obsolete: true + +[Term] +id: PATO:0000921 +name: width +def: "A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +synonym: "breadth" RELATED [] +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0000922 +name: obsolete absolute width +is_obsolete: true + +[Term] +id: PATO:0000923 +name: obsolete relative width +is_obsolete: true + +[Term] +id: PATO:0000924 +name: obsolete relative enzyme function +is_obsolete: true + +[Term] +id: PATO:0000925 +name: obsolete absolute enzyme function +is_obsolete: true + +[Term] +id: PATO:0000926 +name: obsolete intercross fertility +is_obsolete: true + +[Term] +id: PATO:0000927 +name: photosensitivity +def: "A quality inhering in a bearer by virtue of the bearer's disposition to being sensitivity to the action of radiant energy." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000085 ! sensitivity toward + +[Term] +id: PATO:0000928 +name: obsolete absolute photosensitivity +is_obsolete: true + +[Term] +id: PATO:0000929 +name: obsolete light intensivity sensitivity +is_obsolete: true + +[Term] +id: PATO:0000930 +name: obsolete light_quality sensitivity +is_obsolete: true + +[Term] +id: PATO:0000931 +name: obsolete blue light sensitivity +is_obsolete: true + +[Term] +id: PATO:0000932 +name: obsolete far red light sensitivity +is_obsolete: true + +[Term] +id: PATO:0000933 +name: obsolete red light sensitivity +is_obsolete: true + +[Term] +id: PATO:0000934 +name: obsolete u v light sensitivity +is_obsolete: true + +[Term] +id: PATO:0000935 +name: obsolete relative photosensitivity +is_obsolete: true + +[Term] +id: PATO:0000936 +name: truncated +def: "A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly by having or as if having an end or point cut off." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +synonym: "truncate" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000937 +name: disorganized +def: "A structural quality inhering in a bearer by virtue of the bearer's lacking organisation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002264 ! organization quality +disjoint_from: PATO:0000938 ! organized +relationship: is_opposite_of PATO:0000938 ! organized + +[Term] +id: PATO:0000938 +name: organized +def: "A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002264 ! organization quality +relationship: is_opposite_of PATO:0000937 ! disorganized + +[Term] +id: PATO:0000939 +name: obsolete regular shape +subset: mpath_slim +is_obsolete: true + +[Term] +id: PATO:0000940 +name: obsolete irregular shape +subset: mpath_slim +is_obsolete: true + +[Term] +id: PATO:0000941 +name: vacuolated +def: "A structural quality inhering in a cytoplasm that contains fluid filled cavities." [PATOC:mh] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0002014 ! structure, cavities + +[Term] +id: PATO:0000944 +name: sharpness +def: "A shape quality inhering in a bearer by virtue of the bearer's having a sharp or tapered end or point." [PATOC:GVG] +subset: attribute_slim +subset: cell_quality +synonym: "apiculate" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000945 +name: epinastic +def: "A shape quality inhering in a bearer by virtue of the bearer's exhibiting a downward bending of its leaves or other plant parts." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000946 +name: oblong +def: "A shape quality inhering in a bearer by virtue of the bearer's having a somewhat elongated form with approximately parallel sides." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0002006 ! 2-D shape + +[Term] +id: PATO:0000947 +name: elliptic +def: "A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "ellipse-shaped" EXACT [] +synonym: "ellipsoid" EXACT [] +synonym: "elliptical" EXACT [] +synonym: "oval" RELATED [] +synonym: "ovoid" RELATED [] +is_a: PATO:0002318 ! superelliptic + +[Term] +id: PATO:0000948 +name: heart shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having a sinus or rounded lobe at the base." [PATOC:GVG] +comment: Having the shape of heart. +subset: cell_quality +subset: value_slim +synonym: "cordate" EXACT [] +synonym: "cordiform" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0000949 +name: fasciated +def: "A shape quality inhering in a bearer by virtue of the bearer's being abnormally flattened or coalesced." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000950 +name: grey +def: "A color between white and black colors." [http://en.wikipedia.org/wiki/Grey] +subset: mpath_slim +subset: value_slim +synonym: "plumbeous" RELATED [] +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000951 +name: purple +def: "A color that falls about midway between red and blue in hue." [Dictionary:http\://dictionary.reference.com/] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000952 +name: brown +def: "A color consisting of dark orange, red, of very low intensity." [Wikipedia:http\://en.wikipedia.org/wiki/Brown] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000953 +name: orange +def: "A color hue with high-medium wavelength that of that portion of the visible spectrum lying between red and yellow, evoked in the human observer by radiant energy with wavelengths of approximately 585 to 620 nanometers." [Wikipedia:http\://en.wikipedia.org/wiki/Orange] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000954 +name: pink +def: "Red color having medium to high brightness and low to moderate saturation." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000322 ! red + +[Term] +id: PATO:0000955 +name: fertile +def: "A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000274 ! fertility +disjoint_from: PATO:0000956 ! sterile +relationship: is_opposite_of PATO:0000956 ! sterile + +[Term] +id: PATO:0000956 +name: sterile +def: "A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000274 ! fertility +relationship: is_opposite_of PATO:0000955 ! fertile + +[Term] +id: PATO:0000957 +name: opacity +def: "An optical quality which obtains by virtue of the ability of the bearer to absorb visible light." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0000958 +name: obsolete opacity value +is_obsolete: true + +[Term] +id: PATO:0000959 +name: obsolete relative opacity +is_obsolete: true + +[Term] +id: PATO:0000960 +name: obsolete absolute opacity +is_obsolete: true + +[Term] +id: PATO:0000961 +name: obsolete relative opacity value +is_obsolete: true + +[Term] +id: PATO:0000962 +name: obsolete absolute opacity value +is_obsolete: true + +[Term] +id: PATO:0000963 +name: opaque +def: "A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "clouding" RELATED [] +synonym: "cloudy" RELATED [] +synonym: "non-transparent" EXACT [] +is_a: PATO:0000957 ! opacity +relationship: is_opposite_of PATO:0000964 ! transparent + +[Term] +id: PATO:0000964 +name: transparent +def: "A optical quality inhering in a bearer by virtue of the bearer's lacking opacity." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "clear" EXACT [] +synonym: "hyaline" EXACT [] +is_a: PATO:0000957 ! opacity +relationship: is_opposite_of PATO:0000963 ! opaque + +[Term] +id: PATO:0000965 +name: symmetry +def: "A pattern quality of inhering in a bearer by virtue of the correspondence in size, shape, and relative position of the bearer's parts on opposite sides of a dividing line or median plane or about a center or axis." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0000966 +name: obsolete symmetry value +is_obsolete: true + +[Term] +id: PATO:0000967 +name: undulate +alt_id: PATO:0001610 +alt_id: PATO:0001939 +def: "A shape quality inhering in a bearer by virtue of the bearer's having a sinuate margin and rippled surface." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "rippled" RELATED [] +synonym: "sinuate" RELATED [] +synonym: "undulated" EXACT [] +synonym: "undulating" EXACT [] +synonym: "waved" EXACT [] +synonym: "wavy" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0000968 +name: obsolete albino value +is_obsolete: true + +[Term] +id: PATO:0000969 +name: dwarf-like +def: "A size quality inhering in a bearer by virtue of the bearer's being abnormally small." [Answers.com:Answers.com] +subset: value_slim +synonym: "dwarfed" EXACT [] +is_a: PATO:0000587 ! decreased size + +[Term] +id: PATO:0000970 +name: permeability +def: "A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion)." [Biology-online:Biology-online] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0000971 +name: obsolete absolute permeability +is_obsolete: true + +[Term] +id: PATO:0000972 +name: obsolete relative permeability +is_obsolete: true + +[Term] +id: PATO:0000973 +name: porosity +def: "A permeability quality inhering in a bearer by virtue of the bearer's disposition to admit the passage of gas or liquid through pores or interstices." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000970 ! permeability + +[Term] +id: PATO:0000974 +name: obsolete relative porosity +is_obsolete: true + +[Term] +id: PATO:0000975 +name: obsolete absolute porosity +is_obsolete: true + +[Term] +id: PATO:0000976 +name: obsolete permeability value +is_obsolete: true + +[Term] +id: PATO:0000977 +name: obsolete absolute permeability value +is_obsolete: true + +[Term] +id: PATO:0000978 +name: obsolete relative permeability value +is_obsolete: true + +[Term] +id: PATO:0000979 +name: obsolete porosity value +is_obsolete: true + +[Term] +id: PATO:0000980 +name: obsolete absolute porosity value +is_obsolete: true + +[Term] +id: PATO:0000981 +name: obsolete relative porosity value +is_obsolete: true + +[Term] +id: PATO:0000982 +name: permeable +def: "A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion)." [Biology-online:Biology-online] +subset: disposition_slim +subset: value_slim +synonym: "porous" RELATED [] +is_a: PATO:0000970 ! permeability +disjoint_from: PATO:0000983 ! impermeable +relationship: is_opposite_of PATO:0000983 ! impermeable + +[Term] +id: PATO:0000983 +name: impermeable +def: "A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion)." [Biology-online:Biology-online] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000970 ! permeability +relationship: is_opposite_of PATO:0000982 ! permeable + +[Term] +id: PATO:0000984 +name: porous +def: "A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000973 ! porosity +disjoint_from: PATO:0000985 ! non-porous +relationship: is_opposite_of PATO:0000985 ! non-porous + +[Term] +id: PATO:0000985 +name: non-porous +def: "A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000973 ! porosity +relationship: is_opposite_of PATO:0000984 ! porous + +[Term] +id: PATO:0000986 +name: obsolete absolute consistency +is_obsolete: true + +[Term] +id: PATO:0000987 +name: obsolete relative consistency +is_obsolete: true + +[Term] +id: PATO:0000988 +name: obsolete relative consistency value +is_obsolete: true + +[Term] +id: PATO:0000989 +name: obsolete absolute consistency value +is_obsolete: true + +[Term] +id: PATO:0000990 +name: obsolete consistent +is_obsolete: true + +[Term] +id: PATO:0000991 +name: obsolete inconsistent +is_obsolete: true + +[Term] +id: PATO:0000992 +name: viscosity +def: "A physical quality of a liquid inhering in a bearer by virtue of the bearer's disposition to internal resistance to flow." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001548 ! quality of a liquid + +[Term] +id: PATO:0000993 +name: obsolete relative viscosity +is_obsolete: true + +[Term] +id: PATO:0000994 +name: obsolete absolute viscosity +is_obsolete: true + +[Term] +id: PATO:0000995 +name: obsolete viscosity value +is_obsolete: true + +[Term] +id: PATO:0000996 +name: obsolete absolute viscosity value +is_obsolete: true + +[Term] +id: PATO:0000997 +name: obsolete relative viscosity value +is_obsolete: true + +[Term] +id: PATO:0000998 +name: viscous +def: "A viscosity quality inhering in a bearer by virtue of the bearer's having viscosity." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000992 ! viscosity + +[Term] +id: PATO:0000999 +name: alternation +def: "A quality of a single process inhering in a bearer by virtue of the bearer's successive change from one thing or state to another and back again." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000057 ! occurrence + +[Term] +id: PATO:0001000 +name: obsolete relative alternation +is_obsolete: true + +[Term] +id: PATO:0001001 +name: obsolete absolute alternation +is_obsolete: true + +[Term] +id: PATO:0001002 +name: obsolete alternation value +is_obsolete: true + +[Term] +id: PATO:0001003 +name: obsolete relative alternation value +is_obsolete: true + +[Term] +id: PATO:0001004 +name: obsolete absolute alternation value +is_obsolete: true + +[Term] +id: PATO:0001005 +name: latency +def: "A time quality inhering in a bearer by virtue of the time it elapses for the bearer to respond to a stimulus." [PATOC:GVG] +comment: This class is a candidate for obsoletion. The definition is not clear, and the placement under "delayed" is not consistent with the definition. +subset: value_slim +is_a: PATO:0000502 ! delayed + +[Term] +id: PATO:0001006 +name: obsolete absolute latency +is_obsolete: true + +[Term] +id: PATO:0001007 +name: obsolete relative latency +is_obsolete: true + +[Term] +id: PATO:0001008 +name: obsolete absolute latency value +is_obsolete: true + +[Term] +id: PATO:0001009 +name: obsolete relative latency value +is_obsolete: true + +[Term] +id: PATO:0001010 +name: obsolete relative intensity +is_obsolete: true + +[Term] +id: PATO:0001011 +name: obsolete absolute intensity +is_obsolete: true + +[Term] +id: PATO:0001012 +name: obsolete relative intensity value +is_obsolete: true + +[Term] +id: PATO:0001013 +name: obsolete absolute intensity value +is_obsolete: true + +[Term] +id: PATO:0001014 +name: obsolete absolute occurence +is_obsolete: true + +[Term] +id: PATO:0001015 +name: obsolete relative occurence +is_obsolete: true + +[Term] +id: PATO:0001016 +name: obsolete absolute occurence value +is_obsolete: true + +[Term] +id: PATO:0001017 +name: obsolete relative occurence value +is_obsolete: true + +[Term] +id: PATO:0001018 +name: physical quality +alt_id: PATO:0002079 +def: "A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities." [PATOC:GVG] +subset: attribute_slim +synonym: "relational physical quality" EXACT [] +xref: Wikipedia:Physical_property +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001019 +name: mass density +def: "A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +synonym: "density" RELATED [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001020 +name: damage +def: "A structural quality inhering in a bearer by virtue of whether the bearer has been harmed or injured or spoiled." [WordNet:WordNet] +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001021 +name: energy +def: "A physical quality inhering in a bearer by virtue of the bearer's capacity to do work." [Wikipedia:http\://en.wikipedia.org/wiki/Energy] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001022 +name: impulse +def: "A physical quality inhering in a bearer by virtue of the amount of momentum caused a certain force will produce over time." [url:http\://www.wikipremed.com/home_resources/010104_momentum_concepts.pdf] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001023 +name: momentum +def: "A physical quality inhering in a bearer by virtue of the bearer's velocity multiplied by its mass." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001906 ! movement quality + +[Term] +id: PATO:0001024 +name: power +def: "A physical quality inhering in a bearer by virtue of the bearer's rate of doing work." [Wikipedia:http\://en.wikipedia.org/wiki/Power] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001025 +name: pressure +def: "A physical quality that inheres in a bearer by virtue of the bearer's amount of force per unit area it exerts." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001026 +name: work +def: "A physical quality which is equal to the energy transferred by a force to a moving object." [Wikipedia:http\://en.wikipedia.org/wiki/Work] +subset: attribute_slim +synonym: "W" EXACT [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001027 +name: obsolete physical quantity +is_obsolete: true + +[Term] +id: PATO:0001028 +name: acceleration +def: "A physical quality inhering in a bearer by virtue of the rate of change of the bearer's velocity in either speed or direction." [Wikipedia:http\://en.wikipedia.org/wiki/Acceleration] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001906 ! movement quality + +[Term] +id: PATO:0001029 +name: efficiency +def: "A physical quality inhering in a bearer by virtue of ratio of the bearer's output to the bearer's input." [WordNet:WordNet] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001030 +name: flux +def: "A physical quality that exists by virtue of the rate of flow of the bearer across a given surface." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001906 ! movement quality + +[Term] +id: PATO:0001031 +name: elasticity +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to recover its size and shape after deformation in any way." [merriam-webster:merriam-webster] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001033 +name: obsolete stiffness +is_obsolete: true + +[Term] +id: PATO:0001034 +name: strain +def: "A physical quality inhering in a bearer by virtue of the relative change in the bearer's length or the bearer's volume when being stretched or squashed." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001035 +name: force +def: "A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum." [thesaurus.maths:thesaurus.maths] +subset: attribute_slim +subset: scalar_slim +synonym: "force amplitude" EXACT [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001036 +name: obsolete relative life span +is_obsolete: true + +[Term] +id: PATO:0001037 +name: obsolete absolute life span +is_obsolete: true + +[Term] +id: PATO:0001038 +name: obsolete ratio +is_obsolete: true + +[Term] +id: PATO:0001039 +name: obsolete absolute ratio +is_obsolete: true + +[Term] +id: PATO:0001040 +name: obsolete relative ratio +is_obsolete: true + +[Term] +id: PATO:0001041 +name: obsolete relative amplitude +is_obsolete: true + +[Term] +id: PATO:0001042 +name: obsolete absolute amplitude +is_obsolete: true + +[Term] +id: PATO:0001043 +name: susceptibility toward +def: "A quality inhering in an entity by virtue of the bearer's propensity to resist an external stimulus." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "susceptibility" EXACT [] +is_a: PATO:0000085 ! sensitivity toward +relationship: is_opposite_of PATO:0001046 ! resistance to + +[Term] +id: PATO:0001044 +name: obsolete absolute power +is_obsolete: true + +[Term] +id: PATO:0001045 +name: obsolete relative power +is_obsolete: true + +[Term] +id: PATO:0001046 +name: resistance to +def: "A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +subset: scalar_slim +synonym: "resistance" EXACT [] +is_a: PATO:0001995 ! organismal quality +relationship: is_opposite_of PATO:0001043 ! susceptibility toward + +[Term] +id: PATO:0001047 +name: obsolete absolute resistance +is_obsolete: true + +[Term] +id: PATO:0001048 +name: obsolete relative resistance +is_obsolete: true + +[Term] +id: PATO:0001049 +name: obsolete absolute susceptibility +is_obsolete: true + +[Term] +id: PATO:0001050 +name: obsolete relative susceptibility +is_obsolete: true + +[Term] +id: PATO:0001051 +name: acute angle to +def: "An angle which is less than 90 degrees." [thesaurus.maths:thesaurus.maths] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001052 +name: obtuse angle to +def: "An angle which is between 90 degrees and 180 degrees to another entity." [thesaurus.maths:thesaurus.maths] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001053 +name: convex angle to +def: "An angle which is less than 180 degrees to another entity." [maths.org:maths.org] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001054 +name: internal angle +def: "A convex angle that is inside two adjacent sides of a polygon." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001053 ! convex angle to + +[Term] +id: PATO:0001055 +name: reflex angle to +def: "An angular placement quality inhering in a bearer by virtue of the bearer's placement at an angle that is greater than 180 degrees but less than 360 degrees to another entity." [thesaurus.maths:thesaurus.maths] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001056 +name: obsolete number +is_obsolete: true + +[Term] +id: PATO:0001057 +name: obsolete relative acceleration +is_obsolete: true + +[Term] +id: PATO:0001058 +name: obsolete absolute acceleration +is_obsolete: true + +[Term] +id: PATO:0001059 +name: obsolete relative efficiency +is_obsolete: true + +[Term] +id: PATO:0001060 +name: obsolete absolute efficiency +is_obsolete: true + +[Term] +id: PATO:0001061 +name: obsolete relative elasticity +is_obsolete: true + +[Term] +id: PATO:0001062 +name: obsolete absolute elasticity +is_obsolete: true + +[Term] +id: PATO:0001063 +name: obsolete relative flux +is_obsolete: true + +[Term] +id: PATO:0001064 +name: obsolete absolute flux +is_obsolete: true + +[Term] +id: PATO:0001065 +name: obsolete relative stiffness +is_obsolete: true + +[Term] +id: PATO:0001066 +name: obsolete absolute stiffness +is_obsolete: true + +[Term] +id: PATO:0001067 +name: obsolete absolute strain +is_obsolete: true + +[Term] +id: PATO:0001068 +name: obsolete relative strain +is_obsolete: true + +[Term] +id: PATO:0001069 +name: obsolete relative density +is_obsolete: true + +[Term] +id: PATO:0001070 +name: obsolete absolute density +is_obsolete: true + +[Term] +id: PATO:0001071 +name: obsolete relative energy +is_obsolete: true + +[Term] +id: PATO:0001072 +name: obsolete absolute energy +is_obsolete: true + +[Term] +id: PATO:0001073 +name: obsolete relative impulse +is_obsolete: true + +[Term] +id: PATO:0001074 +name: obsolete absolute impulse +is_obsolete: true + +[Term] +id: PATO:0001075 +name: obsolete absolute momentum +is_obsolete: true + +[Term] +id: PATO:0001076 +name: obsolete relative momentum +is_obsolete: true + +[Term] +id: PATO:0001077 +name: obsolete absolute pressure +is_obsolete: true + +[Term] +id: PATO:0001078 +name: obsolete relative pressure +is_obsolete: true + +[Term] +id: PATO:0001079 +name: obsolete absolute work +is_obsolete: true + +[Term] +id: PATO:0001080 +name: obsolete relative work +is_obsolete: true + +[Term] +id: PATO:0001081 +name: obsolete physical measure value +is_obsolete: true + +[Term] +id: PATO:0001082 +name: obsolete damage value +is_obsolete: true + +[Term] +id: PATO:0001083 +name: obsolete acceleration value +is_obsolete: true + +[Term] +id: PATO:0001084 +name: obsolete relative acceleration value +is_obsolete: true + +[Term] +id: PATO:0001085 +name: obsolete absolute acceleration value +is_obsolete: true + +[Term] +id: PATO:0001086 +name: obsolete efficiency value +is_obsolete: true + +[Term] +id: PATO:0001087 +name: obsolete relative efficiency value +is_obsolete: true + +[Term] +id: PATO:0001088 +name: obsolete absolute efficiency value +is_obsolete: true + +[Term] +id: PATO:0001089 +name: obsolete elasticity value +is_obsolete: true + +[Term] +id: PATO:0001090 +name: obsolete absolute elasticity value +is_obsolete: true + +[Term] +id: PATO:0001091 +name: obsolete relative elasticity value +is_obsolete: true + +[Term] +id: PATO:0001092 +name: obsolete flux value +is_obsolete: true + +[Term] +id: PATO:0001093 +name: obsolete relative flux value +is_obsolete: true + +[Term] +id: PATO:0001094 +name: obsolete absolute flux value +is_obsolete: true + +[Term] +id: PATO:0001095 +name: obsolete force value +is_obsolete: true + +[Term] +id: PATO:0001096 +name: obsolete absolute force value +is_obsolete: true + +[Term] +id: PATO:0001097 +name: obsolete relative force value +is_obsolete: true + +[Term] +id: PATO:0001098 +name: obsolete absolute force +is_obsolete: true + +[Term] +id: PATO:0001099 +name: obsolete relative force +is_obsolete: true + +[Term] +id: PATO:0001100 +name: obsolete position value +is_obsolete: true + +[Term] +id: PATO:0001101 +name: obsolete stiffness value +is_obsolete: true + +[Term] +id: PATO:0001102 +name: obsolete absolute stiffness value +is_obsolete: true + +[Term] +id: PATO:0001103 +name: obsolete relative stiffness value +is_obsolete: true + +[Term] +id: PATO:0001104 +name: obsolete strain value +is_obsolete: true + +[Term] +id: PATO:0001105 +name: obsolete absolute strain value +is_obsolete: true + +[Term] +id: PATO:0001106 +name: obsolete relative strain value +is_obsolete: true + +[Term] +id: PATO:0001107 +name: obsolete density value +is_obsolete: true + +[Term] +id: PATO:0001108 +name: obsolete relative amplitude value +is_obsolete: true + +[Term] +id: PATO:0001109 +name: obsolete absolute amplitude value +is_obsolete: true + +[Term] +id: PATO:0001110 +name: obsolete absolute density value +is_obsolete: true + +[Term] +id: PATO:0001111 +name: obsolete relative density value +is_obsolete: true + +[Term] +id: PATO:0001112 +name: obsolete energy value +is_obsolete: true + +[Term] +id: PATO:0001113 +name: obsolete absolute energy value +is_obsolete: true + +[Term] +id: PATO:0001114 +name: obsolete relative energy value +is_obsolete: true + +[Term] +id: PATO:0001115 +name: obsolete impulse value +is_obsolete: true + +[Term] +id: PATO:0001116 +name: obsolete relative impulse value +is_obsolete: true + +[Term] +id: PATO:0001117 +name: obsolete absolute impulse value +is_obsolete: true + +[Term] +id: PATO:0001118 +name: obsolete momentum value +is_obsolete: true + +[Term] +id: PATO:0001119 +name: obsolete absolute momentum value +is_obsolete: true + +[Term] +id: PATO:0001120 +name: obsolete relative momentum value +is_obsolete: true + +[Term] +id: PATO:0001121 +name: obsolete power value +is_obsolete: true + +[Term] +id: PATO:0001122 +name: obsolete absolute power value +is_obsolete: true + +[Term] +id: PATO:0001123 +name: obsolete relative power value +is_obsolete: true + +[Term] +id: PATO:0001124 +name: obsolete pressure value +is_obsolete: true + +[Term] +id: PATO:0001125 +name: obsolete absolute pressure value +is_obsolete: true + +[Term] +id: PATO:0001126 +name: obsolete relative pressure value +is_obsolete: true + +[Term] +id: PATO:0001127 +name: obsolete work value +is_obsolete: true + +[Term] +id: PATO:0001128 +name: obsolete absolute work value +is_obsolete: true + +[Term] +id: PATO:0001129 +name: obsolete relative work value +is_obsolete: true + +[Term] +id: PATO:0001130 +name: obsolete ratio value +is_obsolete: true + +[Term] +id: PATO:0001131 +name: obsolete absolute ratio value +is_obsolete: true + +[Term] +id: PATO:0001132 +name: obsolete relative ratio value +is_obsolete: true + +[Term] +id: PATO:0001133 +name: obsolete immunoglobulin concentration +is_obsolete: true + +[Term] +id: PATO:0001134 +name: obsolete ig a concentration +is_obsolete: true + +[Term] +id: PATO:0001135 +name: obsolete ig d concentration +is_obsolete: true + +[Term] +id: PATO:0001136 +name: obsolete ig e concentration +is_obsolete: true + +[Term] +id: PATO:0001137 +name: obsolete ig g concentration +is_obsolete: true + +[Term] +id: PATO:0001138 +name: obsolete ig m concentration +is_obsolete: true + +[Term] +id: PATO:0001139 +name: obsolete urine glucose composition +is_obsolete: true + +[Term] +id: PATO:0001140 +name: obsolete immunoglobulin concentration value +is_obsolete: true + +[Term] +id: PATO:0001141 +name: obsolete ig a concentration value +is_obsolete: true + +[Term] +id: PATO:0001142 +name: obsolete ig d concentration value +is_obsolete: true + +[Term] +id: PATO:0001143 +name: obsolete ig e concentration value +is_obsolete: true + +[Term] +id: PATO:0001144 +name: obsolete ig g concentration value +is_obsolete: true + +[Term] +id: PATO:0001145 +name: obsolete ig m concentration value +is_obsolete: true + +[Term] +id: PATO:0001146 +name: obsolete resistance value +is_obsolete: true + +[Term] +id: PATO:0001147 +name: obsolete absolute resistance value +is_obsolete: true + +[Term] +id: PATO:0001148 +name: obsolete relative resistance value +is_obsolete: true + +[Term] +id: PATO:0001149 +name: obsolete susceptibility value +is_obsolete: true + +[Term] +id: PATO:0001150 +name: obsolete absolute susceptibility value +is_obsolete: true + +[Term] +id: PATO:0001151 +name: obsolete relative susceptibility value +is_obsolete: true + +[Term] +id: PATO:0001152 +name: susceptible toward +def: "A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "susceptible" EXACT [] +is_a: PATO:0001043 ! susceptibility toward +disjoint_from: PATO:0001153 ! insusceptible toward +relationship: is_opposite_of PATO:0001153 ! insusceptible toward + +[Term] +id: PATO:0001153 +name: insusceptible toward +def: "A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus." [PATO:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "insusceptible" EXACT [] +is_a: PATO:0001043 ! susceptibility toward +relationship: is_opposite_of PATO:0001152 ! susceptible toward + +[Term] +id: PATO:0001154 +name: elongated +def: "A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000052 ! shape +relationship: is_opposite_of PATO:0002364 ! shortened + +[Term] +id: PATO:0001155 +name: obsolete absolute concentration +is_obsolete: true + +[Term] +id: PATO:0001156 +name: obsolete relative concentration +is_obsolete: true + +[Term] +id: PATO:0001157 +name: obsolete absolute concentration value +is_obsolete: true + +[Term] +id: PATO:0001158 +name: obsolete relative concentration value +is_obsolete: true + +[Term] +id: PATO:0001159 +name: concentrated +def: "A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0000033 ! concentration of + +[Term] +id: PATO:0001160 +name: obsolete unconcentrated +is_obsolete: true + +[Term] +id: PATO:0001161 +name: diluted +def: "A concentration which relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0000033 ! concentration of + +[Term] +id: PATO:0001162 +name: increased concentration +def: "A concentration which is higher relative to the normal or average." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "high concentration" EXACT [] +is_a: PATO:0001159 ! concentrated +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001159 ! concentrated +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001163 ! decreased concentration + +[Term] +id: PATO:0001163 +name: decreased concentration +def: "A concentration which is lower relative to the normal or average." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "low concentration" EXACT [] +is_a: PATO:0001159 ! concentrated +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001159 ! concentrated +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001162 ! increased concentration + +[Term] +id: PATO:0001164 +name: dense +def: "A physical quality which inheres in a bearer by virtue of the bearer's exhibiting density." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001019 ! mass density + +[Term] +id: PATO:0001165 +name: obsolete urine enzyme composition value +is_obsolete: true + +[Term] +id: PATO:0001166 +name: obsolete urine enzyme composition +is_obsolete: true + +[Term] +id: PATO:0001167 +name: damaged +def: "A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001020 ! damage +disjoint_from: PATO:0001168 ! undamaged +relationship: is_opposite_of PATO:0001168 ! undamaged + +[Term] +id: PATO:0001168 +name: undamaged +def: "A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001020 ! damage +relationship: is_opposite_of PATO:0001167 ! damaged + +[Term] +id: PATO:0001170 +name: obsolete numerical value +is_obsolete: true + +[Term] +id: PATO:0001171 +name: elastic +def: "An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way." [merriam-webster:merriam-webster] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001031 ! elasticity +disjoint_from: PATO:0001172 ! inelastic +relationship: is_opposite_of PATO:0001172 ! inelastic + +[Term] +id: PATO:0001172 +name: inelastic +def: "An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way." [merriam-webster:merriam-webster] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001031 ! elasticity +relationship: is_opposite_of PATO:0001171 ! elastic + +[Term] +id: PATO:0001173 +name: obsolete urine glucose composition value +is_obsolete: true + +[Term] +id: PATO:0001174 +name: obsolete urine composition +is_obsolete: true + +[Term] +id: PATO:0001175 +name: obsolete urine composition +is_obsolete: true + +[Term] +id: PATO:0001176 +name: obsolete deaf +is_obsolete: true + +[Term] +id: PATO:0001177 +name: obsolete blind +is_obsolete: true + +[Term] +id: PATO:0001178 +name: resistant to +def: "A resistance quality inhering in a bearer by virtue of the bearer's resistance to a stimulus." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "resistant" EXACT [] +is_a: PATO:0001046 ! resistance to + +[Term] +id: PATO:0001179 +name: obsolete immune +is_obsolete: true + +[Term] +id: PATO:0001180 +name: obsolete relative response +is_obsolete: true + +[Term] +id: PATO:0001181 +name: obsolete absolute response +is_obsolete: true + +[Term] +id: PATO:0001182 +name: obsolete relative response +is_obsolete: true + +[Term] +id: PATO:0001183 +name: obsolete absolute response value +is_obsolete: true + +[Term] +id: PATO:0001184 +name: obsolete maturity value +is_obsolete: true + +[Term] +id: PATO:0001185 +name: larval +def: "A maturity quality inhering in a bearer by virtue of the bearer's indirect development, undergoing metamorphosis." [Wikipedia:http\://en.wikipedia.org/wiki/Larval] +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001186 +name: prepubescent +def: "A maturity quality inhering in a bearer by virtue of the bearer's being at the age immediately before puberty." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001187 +name: pupal +def: "A maturity quality inhering in a insect by virtue of the bearer's being in the chrysalis (cocoon) or post larval stage." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001188 +name: prepupal +def: "A maturity quality inhering in a bearer by virtue of the bearer's being in an inactive stage in the development of some insects, between the larval and the pupal stages." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001189 +name: adolescent +def: "A maturity quality inhering in a bearer by virtue of the bearer's being between the onset of puberty and maturity." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001190 +name: juvenile +def: "A maturity quality inhering in a bearer by virtue the bearer's being not fully grown or developed." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000261 ! maturity + +[Term] +id: PATO:0001191 +name: medial to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the middle relative to another entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001192 +name: hyperresponsive to +def: "A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "hyperresponsive" EXACT [] +synonym: "increased responsivity" EXACT [] +is_a: PATO:0000487 ! responsive to +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000487 ! responsive to +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001194 ! hyporesponsive to + +[Term] +id: PATO:0001193 +name: lateral to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the side relative to another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "lateral" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001194 +name: hyporesponsive to +def: "A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "decreased responsivity" EXACT [] +synonym: "hyporesponsive" EXACT [] +is_a: PATO:0000487 ! responsive to +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000487 ! responsive to +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001192 ! hyperresponsive to + +[Term] +id: PATO:0001195 +name: proximal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located more centrally than another entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001196 +name: ventral to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the abdomen of an organism relative to another entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "anterior_ to" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001197 +name: obsolete modified direction +is_obsolete: true + +[Term] +id: PATO:0001198 +name: obsolete unmodified direction +is_obsolete: true + +[Term] +id: PATO:0001199 +name: linear +def: "A shape quality inhering in a bearer by virtue of the bearer's being narrow, with the two opposite margins parallel." [ISBN:0881923214] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001200 +name: T-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter T." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0001890 ! tripartite + +[Term] +id: PATO:0001201 +name: Y-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter Y." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0001890 ! tripartite + +[Term] +id: PATO:0001204 +name: obsolete not enlarged +subset: mpath_slim +is_obsolete: true + +[Term] +id: PATO:0001205 +name: dentated +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having toothlike projections in the margin." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "dentate" EXACT [] +synonym: "toothed" EXACT [] +is_a: PATO:0001206 ! serrated + +[Term] +id: PATO:0001206 +name: serrated +def: "A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex." [ISBN:0881923214] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "serrate" EXACT [] +is_a: PATO:0001976 ! serration +relationship: is_opposite_of PATO:0001975 ! unserrated + +[Term] +id: PATO:0001207 +name: obsolete absolute compatability +is_obsolete: true + +[Term] +id: PATO:0001208 +name: odorless +def: "An odor quality inhering in a bearer by virtue of the bearer's lacking odour." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000058 ! odor +disjoint_from: PATO:0001331 ! odorous + +[Term] +id: PATO:0001209 +name: obsolete absolute function +is_obsolete: true + +[Term] +id: PATO:0001210 +name: obsolete plane_angle_quantity +is_obsolete: true + +[Term] +id: PATO:0001211 +name: obsolete solid_angle_quantity +is_obsolete: true + +[Term] +id: PATO:0001212 +name: obsolete length_unit +is_obsolete: true + +[Term] +id: PATO:0001213 +name: obsolete mass_unit +is_obsolete: true + +[Term] +id: PATO:0001214 +name: obsolete temparature_unit +is_obsolete: true + +[Term] +id: PATO:0001215 +name: obsolete time_unit +is_obsolete: true + +[Term] +id: PATO:0001216 +name: obsolete volume_unit +is_obsolete: true + +[Term] +id: PATO:0001217 +name: obsolete energy_unit +is_obsolete: true + +[Term] +id: PATO:0001218 +name: obsolete substance_unit +is_obsolete: true + +[Term] +id: PATO:0001219 +name: obsolete area_unit +is_obsolete: true + +[Term] +id: PATO:0001220 +name: obsolete angle_unit +is_obsolete: true + +[Term] +id: PATO:0001221 +name: obsolete plane_angle_unit +is_obsolete: true + +[Term] +id: PATO:0001222 +name: obsolete solid_angle_unit +is_obsolete: true + +[Term] +id: PATO:0001223 +name: obsolete quantitative value +is_obsolete: true + +[Term] +id: PATO:0001224 +name: obsolete real number +is_obsolete: true + +[Term] +id: PATO:0001225 +name: obsolete relational number +is_obsolete: true + +[Term] +id: PATO:0001227 +name: variant +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change." [Dictionary:http\://dictionary.reference.com/] +subset: relational_slim +subset: value_slim +synonym: "variable" EXACT [] +is_a: PATO:0001303 ! variability +relationship: is_opposite_of PATO:0000438 ! invariant + +[Term] +id: PATO:0001228 +name: obsolete dull +is_obsolete: true + +[Term] +id: PATO:0001229 +name: high saturation +def: "A color saturation which is of high purity." [PATOC:MAH] +subset: value_slim +synonym: "bright" EXACT [] +synonym: "vivid" RELATED [] +is_a: PATO:0000017 ! color saturation +relationship: is_opposite_of PATO:0000328 ! low saturation + +[Term] +id: PATO:0001230 +name: strength +def: "A quality inhering in a bearer by virtue of the bearer's power or force." [thefreedictionary.com:thefreedictionary.com] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001231 +name: obsolete cold insensitive +is_obsolete: true + +[Term] +id: PATO:0001232 +name: obsolete heat insentive +is_obsolete: true + +[Term] +id: PATO:0001233 +name: dorsal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the back or upper surface of an organism relative to another entity." [PATOC:nw] +subset: relational_slim +subset: value_slim +synonym: "dorsal" EXACT [] +synonym: "posterior_to (human torso)" EXACT [] +synonym: "superior_to (human head)" EXACT [] +is_a: PATO:0000140 ! position +relationship: is_opposite_of PATO:0001234 ! distal to + +[Term] +id: PATO:0001234 +name: distal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "distal" EXACT [] +is_a: PATO:0000140 ! position +relationship: is_opposite_of PATO:0001233 ! dorsal to + +[Term] +id: PATO:0001235 +name: obsolete strength value +is_obsolete: true + +[Term] +id: PATO:0001236 +name: process quality +alt_id: PATO:0001239 +alt_id: PATO:0001240 +def: "A quality which inheres in an process." [PATOC:GVG] +comment: See comments of relational quality of a physical entity. +synonym: "quality of a process" EXACT [] +synonym: "quality of occurrent" EXACT [] +synonym: "quality of process" EXACT [] +synonym: "relational quality of occurrent" EXACT [] +is_a: PATO:0000001 ! quality +disjoint_from: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001241 +name: physical object quality +alt_id: PATO:0001237 +alt_id: PATO:0001238 +def: "A quality which inheres in a continuant." [PATOC:GVG] +comment: Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles. +synonym: "monadic quality of a continuant" EXACT [] +synonym: "monadic quality of an object" NARROW [] +synonym: "monadic quality of continuant" NARROW [] +synonym: "multiply inhering quality of a physical entity" EXACT [] +synonym: "quality of a continuant" EXACT [] +synonym: "quality of a single physical entity" EXACT [] +synonym: "quality of an object" EXACT [] +synonym: "quality of continuant" EXACT [] +xref: snap:Quality +is_a: PATO:0000001 ! quality + +[Term] +id: PATO:0001242 +name: wavelength +def: "A physical quality which is equal to the distance between repeating units of a wave pattern." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001243 +name: light blue +def: "A color consisting of blue hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000318 ! blue + +[Term] +id: PATO:0001244 +name: dark blue +def: "A color consisting of blue hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000318 ! blue + +[Term] +id: PATO:0001245 +name: dark brown +def: "A color consisting of brown hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000952 ! brown + +[Term] +id: PATO:0001246 +name: light brown +def: "A color consisting of brown hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000952 ! brown + +[Term] +id: PATO:0001247 +name: light cyan +def: "A color consisting of cyan hue and high brightness." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000319 ! cyan + +[Term] +id: PATO:0001248 +name: dark cyan +def: "A color consisting of cyan hue and low brightness." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000319 ! cyan + +[Term] +id: PATO:0001249 +name: dark green +def: "A color consisting of green hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001250 +name: light green +def: "A color consisting of green hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001251 +name: dark grey +def: "A color consisting of grey color and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000950 ! grey + +[Term] +id: PATO:0001252 +name: light grey +def: "A color consisting of grey color and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000950 ! grey + +[Term] +id: PATO:0001253 +name: light magenta +def: "A color consisting of magenta color and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000321 ! magenta + +[Term] +id: PATO:0001254 +name: dark magenta +def: "A color consisting of magenta with low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000321 ! magenta + +[Term] +id: PATO:0001255 +name: light orange +def: "A color consisting of orange hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000953 ! orange + +[Term] +id: PATO:0001256 +name: dark orange +def: "A color consisting of orange color and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000953 ! orange + +[Term] +id: PATO:0001257 +name: light deep pink +def: "Pink color having high brightness and moderate saturation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000954 ! pink + +[Term] +id: PATO:0001258 +name: deep pink +def: "Pink color having medium brightness and moderate saturation." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000954 ! pink + +[Term] +id: PATO:0001259 +name: dark purple +def: "A color consisting of purple color and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000951 ! purple + +[Term] +id: PATO:0001260 +name: light purple +def: "A color consisting of purple color and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000951 ! purple + +[Term] +id: PATO:0001261 +name: dark red +def: "A color consisting of red hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000322 ! red + +[Term] +id: PATO:0001262 +name: light red +def: "A color consisting of red hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000322 ! red + +[Term] +id: PATO:0001263 +name: dark yellow +def: "A color consisting of yellow hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000324 ! yellow + +[Term] +id: PATO:0001264 +name: light yellow +def: "A color consisting of yellow hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "blond" RELATED [] +is_a: PATO:0000324 ! yellow + +[Term] +id: PATO:0001265 +name: saturated blue +def: "A color consisting of blue hue and high saturation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "bright blue" RELATED [] +is_a: PATO:0000318 ! blue + +[Term] +id: PATO:0001266 +name: desaturated blue +def: "A color consisting of blue hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale blue" EXACT [] +is_a: PATO:0000318 ! blue + +[Term] +id: PATO:0001267 +name: saturated brown +def: "A color consisting of brown hue and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright brown" RELATED [] +is_a: PATO:0000952 ! brown + +[Term] +id: PATO:0001268 +name: desaturated brown +def: "A color consisting of brown hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale brown" EXACT [] +is_a: PATO:0000952 ! brown + +[Term] +id: PATO:0001269 +name: saturated cyan +def: "A color consisting of cyan colour and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright cyan" RELATED [] +is_a: PATO:0000319 ! cyan + +[Term] +id: PATO:0001270 +name: desaturated cyan +def: "A color consisting of cyan colour and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale cyan" EXACT [] +is_a: PATO:0000319 ! cyan + +[Term] +id: PATO:0001271 +name: saturated green +def: "A color consisting of green hue and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright green" RELATED [] +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001272 +name: desaturated green +def: "A color consisting of green hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale green" EXACT [] +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001273 +name: obsolete bright grey +def: "A color consisting of grey color and high saturation." [PATOC:GVG] +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0001274 +name: obsolete pale grey +def: "A color consisting of grey color and low saturation." [PATOC:GVG] +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0001275 +name: saturated magenta +def: "A color consisting of magenta color and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright magenta" RELATED [] +is_a: PATO:0000321 ! magenta + +[Term] +id: PATO:0001276 +name: desaturated magenta +def: "A color consisting of magenta color and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale magenta" EXACT [] +is_a: PATO:0000321 ! magenta + +[Term] +id: PATO:0001277 +name: saturated orange +def: "A color consisting of orange hue and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright orange" RELATED [] +is_a: PATO:0000953 ! orange + +[Term] +id: PATO:0001278 +name: desaturated orange +def: "A color consisting of orange hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale orange" EXACT [] +is_a: PATO:0000953 ! orange + +[Term] +id: PATO:0001280 +name: dark pale pink +alt_id: PATO:0001279 +def: "Pink color having medium brightness and low saturation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "bright pink" RELATED [] +is_a: PATO:0000954 ! pink + +[Term] +id: PATO:0001281 +name: saturated purple +def: "A color consisting of purple color and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright purple" RELATED [] +is_a: PATO:0000951 ! purple + +[Term] +id: PATO:0001282 +name: desaturated purple +def: "A color consisting of purple color and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale purple" EXACT [] +is_a: PATO:0000951 ! purple + +[Term] +id: PATO:0001283 +name: saturated red +def: "A color consisting of red hue and high saturation." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "bright red" RELATED [] +is_a: PATO:0000322 ! red + +[Term] +id: PATO:0001284 +name: desaturated red +def: "A color consisting of red hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale red" EXACT [] +is_a: PATO:0000322 ! red + +[Term] +id: PATO:0001285 +name: saturated yellow +def: "A color consisting of yellow hue and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright yellow" RELATED [] +is_a: PATO:0000324 ! yellow + +[Term] +id: PATO:0001286 +name: desaturated yellow +def: "A color consisting of yellow hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale yellow" EXACT [] +is_a: PATO:0000324 ! yellow + +[Term] +id: PATO:0001287 +name: red brown +def: "A color consisting of red and brown hue." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000952 ! brown + +[Term] +id: PATO:0001288 +name: dark red brown +def: "A color consisting of red and brown hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001287 ! red brown + +[Term] +id: PATO:0001289 +name: light red brown +def: "A color consisting of red and brown hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001287 ! red brown + +[Term] +id: PATO:0001290 +name: fluorescent +def: "A fluorescence quality inhering in a bearer by virtue of emitting light during exposure to radiation from an external source." [web:www.thefreedictionary.com/] +subset: value_slim +is_a: PATO:0000018 ! fluorescence + +[Term] +id: PATO:0001291 +name: electromagnetic (EM) radiation quality +def: "A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation." [Wikipedia:http\://en.wikipedia.org/wiki/Electromagnetic_radiation] +subset: attribute_slim +is_a: PATO:0001739 ! radiation quality + +[Term] +id: PATO:0001292 +name: full-spectrum EM radiation quality +def: "An EM radiation quality that is independent of the EM wavelength range." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001291 ! electromagnetic (EM) radiation quality + +[Term] +id: PATO:0001293 +name: absorption quality +def: "A scalar EM radiation quality which obtains by the capacity of the bearer to retain radiation." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001292 ! full-spectrum EM radiation quality + +[Term] +id: PATO:0001294 +name: radiation reflective quality +def: "A scalar EM radiation quality which obtains by the capacity of the bearer to scatter or reflect radiation." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001292 ! full-spectrum EM radiation quality + +[Term] +id: PATO:0001295 +name: albedo +def: "A reflective quality restricted to a particular wavelength." [PATOC:cjm] +comment: Typically used for light, but also applied to full EM spectrum. +subset: attribute_slim +is_a: PATO:0001294 ! radiation reflective quality + +[Term] +id: PATO:0001296 +name: luminous flux +def: "A scalar optical quality which obtains by the magnitude of the light emitted by the bearer." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0001297 +name: reflectivity +def: "A radiation reflective quality inhering in a bearer by virtue of the ratio of the energy of a wave reflected from its surface to the energy possessed by the wave striking the bearer's surface." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001294 ! radiation reflective quality + +[Term] +id: PATO:0001298 +name: phosphorescence +def: "A fluorescence in which the emittence continues after the absorption has ceased." [PATOC:GVG] +subset: relational_slim +is_a: PATO:0000018 ! fluorescence + +[Term] +id: PATO:0001299 +name: radiation emitting quality +def: "A scalar EM radiation quality which obtains by the capacity of the bearer to emit radiation." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001292 ! full-spectrum EM radiation quality + +[Term] +id: PATO:0001300 +name: optical quality +def: "An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001291 ! electromagnetic (EM) radiation quality + +[Term] +id: PATO:0001301 +name: chromatic property +def: "An optical quality that is the mixture, purity or pattern of wavelengths of light perceived by the observer." [PATOC:MAH] +subset: attribute_slim +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0001302 +name: vermilion +def: "A color consisting of red and orange hue with a slight amount of gray." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0001303 +name: variability +def: "A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing." [Dictionary:http\://dictionary.reference.com/] +subset: attribute_slim +synonym: "variability of a physical quality" RELATED [] +is_a: PATO:0000001 ! quality + +[Term] +id: PATO:0001304 +name: variability of temperature +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change." [PATO:GVG] +subset: attribute_slim +intersection_of: PATO:0001303 ! variability +intersection_of: towards PATO:0000146 ! temperature + +[Term] +id: PATO:0001305 +name: increased temperature +alt_id: PATO:0000678 +def: "A temperature which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high temperature" EXACT [] +synonym: "hot" EXACT [] +is_a: PATO:0000146 ! temperature +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000146 ! temperature +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001306 ! decreased temperature + +[Term] +id: PATO:0001306 +name: decreased temperature +alt_id: PATO:0000677 +def: "A temperature which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "cold" EXACT [] +synonym: "low temperature" EXACT [] +is_a: PATO:0000146 ! temperature +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000146 ! temperature +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001305 ! increased temperature + +[Term] +id: PATO:0001307 +name: decreased variability of temperature +def: "A variability of temperature which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low variability of temperature" EXACT [] +intersection_of: PATO:0001314 ! variant temperature +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001308 ! increased variability of temperature + +[Term] +id: PATO:0001308 +name: increased variability of temperature +def: "A variability of temperature which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high variability of temperature" EXACT [] +intersection_of: PATO:0001314 ! variant temperature +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001307 ! decreased variability of temperature + +[Term] +id: PATO:0001309 +name: duration +alt_id: PATO:0000081 +def: "A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point." [PATOC:mellybelly] +subset: attribute_slim +subset: hpo_slim +synonym: "period" EXACT [] +synonym: "time" RELATED [] +is_a: PATO:0002062 ! physical quality of a process + +[Term] +id: PATO:0001310 +name: duration of temperature +def: "A duration quality of a process inhering in a bearer by virtue of the bearer's duration of exhibition of thermal energy." [PATOC:GVG] +comment: TODO: obsolete? I don't know what this means. +subset: attribute_slim +is_a: PATO:0001309 ! duration + +[Term] +id: PATO:0001311 +name: decreased duration of temperature +def: "A duration of temperature which is lesser relative to the normal or average enduring or continuing in time." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000499 ! decreased duration +is_a: PATO:0001310 ! duration of temperature +intersection_of: PATO:0001310 ! duration of temperature +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001312 ! increased duration of temperature + +[Term] +id: PATO:0001312 +name: increased duration of temperature +def: "A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time." [PATOC:GVG] +subset: value_slim +synonym: "high duration of temperature" EXACT [] +is_a: PATO:0000498 ! increased duration +is_a: PATO:0001310 ! duration of temperature +intersection_of: PATO:0001310 ! duration of temperature +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001311 ! decreased duration of temperature + +[Term] +id: PATO:0001313 +name: invariant temperature +def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature." [PATO:GVG] +subset: relational_slim +is_a: PATO:0001304 ! variability of temperature +relationship: is_opposite_of PATO:0001314 ! variant temperature + +[Term] +id: PATO:0001314 +name: variant temperature +def: "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature." [PATO:GVG] +subset: value_slim +is_a: PATO:0001304 ! variability of temperature +relationship: is_opposite_of PATO:0001313 ! invariant temperature + +[Term] +id: PATO:0001315 +name: mild increased temperature +def: "A temperature which is increased by a low degree." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001305 ! increased temperature + +[Term] +id: PATO:0001316 +name: moderate increased temperature +def: "A temperature which is increased by a medium degree." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001305 ! increased temperature + +[Term] +id: PATO:0001317 +name: severe increased temperature +def: "A temperature which is increased by a high degree." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001305 ! increased temperature + +[Term] +id: PATO:0001318 +name: indiscriminate +def: "A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000189 ! discrimination +disjoint_from: PATO:0001319 ! discriminate +relationship: is_opposite_of PATO:0001319 ! discriminate + +[Term] +id: PATO:0001319 +name: discriminate +def: "A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000189 ! discrimination +relationship: is_opposite_of PATO:0001318 ! indiscriminate + +[Term] +id: PATO:0001320 +name: pubescent hair +def: "A pilosity quality of being covered with short hairs or soft down." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000454 ! hairy + +[Term] +id: PATO:0001321 +name: right angle to +def: "An angle which is 90 degrees to another entity." [thesaurus.math:thesaurus.math] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001322 +name: straight angle to +def: "An angle which is 180 degrees to another entity." [thesaurus.maths:thesaurus.maths] +comment: TODO: decide on correct parentage. +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle + +[Term] +id: PATO:0001323 +name: area +def: "A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent." [Wikipedia:http\://en.wikipedia.org/wiki/Area] +subset: attribute_slim +subset: mpath_slim +subset: scalar_slim +is_a: PATO:0001709 ! 2-D extent + +[Term] +id: PATO:0001324 +name: bilateral symmetry +def: "A symmetry quality inhering in a bearer by virtue of the bearer's being symmetric about a plane running from its frontal end to its caudal end (head to tail), and has nearly identical right and left halves." [Wikipedia:http\://en.wikipedia.org/wiki/Bilateral_symmetry] +subset: cell_quality +subset: value_slim +synonym: "left-right symmetry" EXACT [] +synonym: "pennate" RELATED [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0002-2908-3327] +is_a: PATO:0000965 ! symmetry + +[Term] +id: PATO:0001325 +name: radial symmetry +def: "A symmetry quality inhering in a bearer by virtue of the bearer's having equal proportion around a central point or axis." [PATOC:GVG] +subset: attribute_slim +subset: cell_quality +synonym: "centric" EXACT [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0002-2908-3327] +is_a: PATO:0000965 ! symmetry + +[Term] +id: PATO:0001326 +name: obsolete left-right symmetry +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0001327 +name: zygomorphic +def: "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by only one longitudinal plane passing through the axis." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0001324 ! bilateral symmetry + +[Term] +id: PATO:0001328 +name: actinomorphic +def: "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by any longitudinal plane passing through the axis." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0001325 ! radial symmetry + +[Term] +id: PATO:0001329 +name: flavourful +def: "A flavor quality inhering in a bearer by virtue of the bearer's having flavour." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0000043 ! flavor +disjoint_from: PATO:0001330 ! flavourless + +[Term] +id: PATO:0001330 +name: flavourless +def: "A flavor quality inhering in a bearer by virtue of the bearer's lacking flavour." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0000043 ! flavor + +[Term] +id: PATO:0001331 +name: odorous +def: "An odor quality inhering in a bearer by virtue of the bearer's having odour." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000058 ! odor + +[Term] +id: PATO:0001332 +name: amorphous +def: "A morphology quality inhering in a bearer by virtue of the bearer's lack of distinct morphology." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0001333 +name: temporally extended +def: "A quality of a process which ends later than the natural end time." [PATOC:melissa] +subset: value_slim +is_a: PATO:0002304 ! increased process quality +is_a: PATO:0002324 ! offset quality +relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal + +[Term] +id: PATO:0001334 +name: diameter +def: "A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary." [Wikipedia:http\://en.wikipedia.org/wiki/Diameter] +subset: attribute_slim +subset: mpath_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0001335 +name: bacterial mating type +def: "A mating type that indicates whether the F plasmid has integrated into the chromosome." [MGED:MGED] +subset: attribute_slim +is_a: PATO:0001895 ! mating type + +[Term] +id: PATO:0001336 +name: obsolete unknown sex +def: "A biological sex quality inhering in an individual whose sex is unknown." [MGED:MGED] +comment: Unknown is not a type of sex. +subset: value_slim +is_obsolete: true + +[Term] +id: PATO:0001337 +name: yeast mating type +def: "A yeast mating type." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001895 ! mating type + +[Term] +id: PATO:0001338 +name: mixed sex +def: "A biological sex quality inhering in a population of multiple sexes." [MGED:MGED] +comment: For example a mixture of females and male or males and hermaphrodites. +subset: value_slim +is_a: PATO:0002003 ! population quality + +[Term] +id: PATO:0001339 +name: biomaterial purity +def: "A composition quality inhering in an bearer by virtue of the bearer's homogeneity of a biomaterial." [MGED:MGED] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001340 +name: hermaphrodite +def: "A biological sex quality inhering in an organism or a population with both male and female sexual organs in one individual." [MGED:MGED] +subset: value_slim +synonym: "intersex" EXACT [] +is_a: PATO:0001894 ! phenotypic sex + +[Term] +id: PATO:0001341 +name: a mating type (yeast) +def: "A S. cerevisiae mating type cells that secrete a pheromone that in alpha haploids stimulates processes that lead to mating." [MGED:MGED] +subset: value_slim +synonym: "a" BROAD [] +is_a: PATO:0001342 ! Saccharomyces cerevisiae mating type + +[Term] +id: PATO:0001342 +name: Saccharomyces cerevisiae mating type +def: "A S. cerevisiae mating type." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001337 ! yeast mating type + +[Term] +id: PATO:0001343 +name: Schizosaccharomyces pombe mating type +def: "A S. pombe mating type determined by the gene configuration on the mat1 locus." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001337 ! yeast mating type + +[Term] +id: PATO:0001344 +name: alpha mating type (yeast) +def: "A S. cerevisiae mating type cells that secrete a pheromone that stimulates a haploids." [MGED:MGED] +subset: value_slim +synonym: "alpha" BROAD [] +is_a: PATO:0001342 ! Saccharomyces cerevisiae mating type + +[Term] +id: PATO:0001345 +name: h minus +def: "A S. pombe mating type determined by the mat1-Mc and mat1-Mi on the mat1 locus." [PATOC:GVG] +subset: value_slim +synonym: "h -" EXACT [] +synonym: "M" EXACT [] +is_a: PATO:0001343 ! Schizosaccharomyces pombe mating type + +[Term] +id: PATO:0001346 +name: h plus +def: "A S. pombe mating type determined by the mat1-Pc and mat1-Pi on the mat1 locus." [PATOC:GVG] +subset: value_slim +synonym: "h+" EXACT [] +synonym: "P" EXACT [] +is_a: PATO:0001343 ! Schizosaccharomyces pombe mating type + +[Term] +id: PATO:0001347 +name: F mating type +def: "A bacterial mating type indicating the presence of F plasmid in a bacterial cell." [MGED:MGED] +subset: value_slim +is_a: PATO:0001335 ! bacterial mating type + +[Term] +id: PATO:0001348 +name: F minus mating type +def: "A bacterial mating type indicating the absence of F plasmid in a bacterial cell." [MGED:MGED] +subset: value_slim +synonym: "F-" EXACT [] +is_a: PATO:0001335 ! bacterial mating type + +[Term] +id: PATO:0001349 +name: high frequency recombinant +def: "A mating type that indicates that the F plasmid has integrated into the chromosome." [MGED:MGED] +subset: value_slim +synonym: "Hfr" EXACT [] +is_a: PATO:0001348 ! F minus mating type + +[Term] +id: PATO:0001350 +name: angular acceleration +def: "A physical quality inhering in a bearer by virtue of the rate of change of the bearer's angular velocity." [Wikipedia:http\://en.wikipedia.org/wiki/Angular_acceleration] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001028 ! acceleration + +[Term] +id: PATO:0001351 +name: area density +def: "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given area." [Wikipedia:http\://en.wikipedia.org/wiki/Area_density] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001019 ! mass density + +[Term] +id: PATO:0001352 +name: linear density +def: "A density quality which is equal to the mass exerting an influence on a one-dimensional object." [Wikipedia:http\://en.wikipedia.org/wiki/Linear_density] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001019 ! mass density + +[Term] +id: PATO:0001353 +name: volumetric density +def: "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given volume." [Wikipedia:http\://en.wikipedia.org/wiki/Mass_density] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001019 ! mass density + +[Term] +id: PATO:0001354 +name: translucent +def: "A optical quality inhering in a bearer by virtue of the bearer's exhibiting low opacity." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000957 ! opacity + +[Term] +id: PATO:0001355 +name: convex +def: "A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0002005 ! concavity +relationship: is_opposite_of PATO:0001857 ! concave + +[Term] +id: PATO:0001356 +name: pleomorphic +def: "A shape quality inhering in a cell by virtue of the bearer's ability to take on two or more different shapes during its life cycle." [PATOC:GVG] +subset: cell_quality +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001357 +name: pulvinate +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped like a cushion or has a marked convex cushion-like form." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape + +[Term] +id: PATO:0001358 +name: umbonate +def: "A quality inhering in a bearer by virtue of the bearer's having a knob or knoblike protuberance." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0001359 +name: rugose +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having many wrinkles or creases on the surface." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001925 ! surface feature shape + +[Term] +id: PATO:0001360 +name: filamentous +def: "A shape quality inhering in a bearer by virtue of the bearer's having thin filamentous extensions at its edge." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001361 +name: warty +def: "A texture quality inhering in a bearer by virtue of the bearer's being covered with warts or projections that resemble warts resulting in a hard rough surface." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000700 ! rough + +[Term] +id: PATO:0001362 +name: fragile +def: "A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed." [WordNet:WordNet] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001662 ! fragility +disjoint_from: PATO:0001716 ! non-fragile +relationship: is_opposite_of PATO:0001716 ! non-fragile + +[Term] +id: PATO:0001364 +name: rhizoidal +def: "A quality inhering in a bearer by virtue of the bearer's having root like extensions radiating from its center." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0001365 +name: spiny +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having spines, thorns or similar thin projections on its surface." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0001925 ! surface feature shape + +[Term] +id: PATO:0001366 +name: punctiform +def: "A shape quality inhering in a bearer by virtue of the bearer's being small and resembling a point." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001367 +name: lobate +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001925 ! surface feature shape + +[Term] +id: PATO:0001368 +name: erose +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having an irregularly toothed edge." [PATOC:GVG] +subset: cell_quality +subset: value_slim +synonym: "jagged" RELATED [] +is_a: PATO:0001976 ! serration + +[Term] +id: PATO:0001369 +name: raised +def: "A shape quality inhering in a colony by virtue of the bearer's appearing above the medium surface with terraced edges." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001370 +name: viscid +def: "A coating quality which is sticky or clammy." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002012 ! coating + +[Term] +id: PATO:0001371 +name: mucoid +def: "A composition quality inhering in an bearer by virtue of the bearer's consistency of mucus." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "mucinous" RELATED [] +synonym: "mucous" RELATED [] +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001372 +name: refractivity +def: "A physical quality that inheres in propagating wave (light or sound) virtue of the bearer's change in direction when passing from one medium to another." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001294 ! radiation reflective quality + +[Term] +id: PATO:0001373 +name: glistening +def: "A reflectivity quality inhering in a bearer by virtue of the bearer's reflecting lots of light." [PATOC:GVG] +subset: value_slim +synonym: "glossy" EXACT [] +synonym: "shiny" EXACT [] +is_a: PATO:0001297 ! reflectivity + +[Term] +id: PATO:0001374 +name: ploidy +def: "A cellular quality inhering in a bearer by virtue of the bearer's number of homologous sets of chromosomes in the nucleus or primary chromosome-containing compartment of the cell, each set essentially coding for all the biological traits of the organism." [Wikipedia:http\://en.wikipedia.org/wiki/Ploidy] +subset: attribute_slim +is_a: PATO:0001396 ! cellular quality + +[Term] +id: PATO:0001375 +name: haploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of homologous chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Haploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001393 ! euploid + +[Term] +id: PATO:0001376 +name: monoploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of unique homologous chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Monoploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001393 ! euploid + +[Term] +id: PATO:0001377 +name: polyploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's containing more than two homologous sets of chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Polyploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001393 ! euploid + +[Term] +id: PATO:0001378 +name: autopolyploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from a single species." [Wikipedia:http\://en.wikipedia.org/wiki/Autopolyploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001379 +name: allopolyploidy +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from different species." [Wikipedia:http\://en.wikipedia.org/wiki/Allopolyploidy] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001380 +name: paleopolyploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's having an ancient polyploid ancestor." [Wikipedia:http\://en.wikipedia.org/wiki/Paleopolyploid] +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001381 +name: triploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing three homologous sets of chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Triploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001382 +name: tetraploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Tetraploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001383 +name: pentaploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing five homologous sets of chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Pentaploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001384 +name: hexaploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Hexaploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001385 +name: aneuploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's containing a non-integral multiple of the monoploid number, due to extra or missing chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Aneuploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001374 ! ploidy + +[Term] +id: PATO:0001386 +name: monosomy +def: "An aneuploidy quality inhering in a bearer by virtue of the bearer's containing only one chromosome from a pair in a cell's nucleus." [Wikipedia:http\://en.wikipedia.org/wiki/Monosomy] +subset: cell_quality +subset: value_slim +is_a: PATO:0001385 ! aneuploid + +[Term] +id: PATO:0001387 +name: disomy +def: "An aneuploidy quality inhering in a bearer by virtue of the bearer's containing only two chromosome from a pair in a cell's nucleus." [Wikipedia:http\://en.wikipedia.org/wiki/Disomy] +comment: For diploid organisms, such as humans, it is the normal condition, whilst for organisms that are normally triploid or above, disomy is an aneuploidy. +subset: cell_quality +subset: value_slim +is_a: PATO:0001385 ! aneuploid + +[Term] +id: PATO:0001388 +name: uniparental disomy +def: "A disomy quality inhering in a bearer by virtue of the bearer's containing two copies of the chromosome from one of the parents (with no contribution from the other parent)." [Wikipedia:http\://en.wikipedia.org/wiki/Uniparental_disomy] +subset: cell_quality +subset: value_slim +is_a: PATO:0001387 ! disomy + +[Term] +id: PATO:0001389 +name: trisomy +def: "An aneuploidy quality inhering in a bearer by virtue of the bearer's containing three, instead of two, chromosomes of a particular numbered type in an organism." [Wikipedia:http\://en.wikipedia.org/wiki/Trisomy] +subset: cell_quality +subset: value_slim +is_a: PATO:0001385 ! aneuploid + +[Term] +id: PATO:0001390 +name: partial trisomy +def: "A trisomy quality inhering in a bearer when part of the bearer's extra chromosome is attached to one of the other chromosomes, or if one of the bearer's chromosomes has two copies of part of its chromosome." [Wikipedia:http\://en.wikipedia.org/wiki/Partial_trisomy] +subset: value_slim +is_a: PATO:0001389 ! trisomy + +[Term] +id: PATO:0001391 +name: mosaic trisomy +def: "A trisomy quality inhering in a bearer by virtue of the bearer's having extra chromosomal material in only some of it's cells." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0001389 ! trisomy + +[Term] +id: PATO:0001392 +name: endopolyploid +def: "A polyploidy quality inhering in a bearer by virtue of the bearer's chromosome number being increased by endomitosis and for which the degree of ploidy is proportional to the number of times that endomitosis has taken place." [Wikipedia:http\://en.wikipedia.org/wiki/Endopolyploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001377 ! polyploid + +[Term] +id: PATO:0001393 +name: euploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's containing an integral multiple of the monoploid number, possibly excluding the sex-determining chromosomes." [Wikipedia:http\://en.wikipedia.org/wiki/Euploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001374 ! ploidy + +[Term] +id: PATO:0001394 +name: diploid +def: "A ploidy quality inhering in a bearer by virtue of the bearer's having two copies (homologs) of each chromosome, usually one from the mother and one from the father." [Wikipedia:http\://en.wikipedia.org/wiki/Diploid] +comment: The exact number may be one or two different from the 2n number and still be classified as diploidy (although with aneuploidy). Nearly all mammals are diploid organisms, although all individuals have some small fracton of cells that are polyploidy. +subset: cell_quality +subset: value_slim +is_a: PATO:0001393 ! euploid + +[Term] +id: PATO:0001395 +name: haplodiploid +def: "A diploidy quality inhering in a bearer in by virtue of belonging in a species whose one of the sexes has haploid cells and the other has diploid cells." [Wikipedia:http\://en.wikipedia.org/wiki/Haplodiploid] +subset: cell_quality +subset: value_slim +is_a: PATO:0001394 ! diploid + +[Term] +id: PATO:0001396 +name: cellular quality +def: "A monadic quality of continuant that exists at the cellular level of organisation." [PATOC:GVG] +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001397 +name: cellular potency +def: "A cellular quality that arises by virtue of whether the bearer's disposition to differentiate into one or more mature cell types." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001396 ! cellular quality + +[Term] +id: PATO:0001398 +name: self-renewal +def: "A cellular quality inhering in a bearer by virtue of the bearer's having the ability to go through numerous cycles of cell division while maintaining the undifferentiated state." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0002102 ! proliferative + +[Term] +id: PATO:0001399 +name: totipotent +def: "A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers and extraembryonic cell types." [Wikipedia:http\://en.wikipedia.org/wiki/Totipotent] +subset: cell_quality +subset: disposition_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency + +[Term] +id: PATO:0001400 +name: unipotent +def: "A cellular potency that is the capacity to produce only one differentiated cell type." [Wikipedia:http\://en.wikipedia.org/wiki/Unipotent] +comment: Unipotent cells have the quality of self-renewal which distinguishes them from non-stem cells. +subset: cell_quality +subset: disposition_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency + +[Term] +id: PATO:0001401 +name: oligopotent +def: "A cellular potency that is the capacity to form multiple differentiated cell types of a specific lineage and lack self renewing capacity." [PATOC:MAH] +comment: Less potent than multipotent, often thought of as precursor or progenitor cell status. +subset: cell_quality +subset: disposition_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency + +[Term] +id: PATO:0001402 +name: multipotent +def: "A cellular potency that is the capacity to form multiple differentiated cell types." [Wikipedia:http\://en.wikipedia.org/wiki/Multipotent] +subset: cell_quality +subset: disposition_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency + +[Term] +id: PATO:0001403 +name: pluripotent +def: "A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers but not extraembryonic cell types." [Wikipedia:http\://en.wikipedia.org/wiki/Pluripotent] +subset: cell_quality +subset: disposition_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency + +[Term] +id: PATO:0001404 +name: nucleate quality +def: "A cellular quality inhering in a bearer by virtue of bearer's number of nuclei." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001396 ! cellular quality + +[Term] +id: PATO:0001405 +name: anucleate +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having no nucleus." [Biology-online:Biology-online] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001404 ! nucleate quality + +[Term] +id: PATO:0001406 +name: binucleate +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei." [Biology-online:Biology-online] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001908 ! multinucleate + +[Term] +id: PATO:0001407 +name: mononucleate +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus." [Biology-online:Biology-online] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0002505 ! nucleated + +[Term] +id: PATO:0001408 +name: ciliatedness +def: "A cellular quality inhering in a bearer by virtue of the bearer's having thin, tail-like projections extending outwards from the cell body." [Wikipedia:http\://en.wikipedia.org/wiki/Ciliated] +subset: cell_quality +subset: value_slim +is_a: PATO:0001396 ! cellular quality + +[Term] +id: PATO:0001409 +name: spindle-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's resembling a long tapered rod." [Biology-online:Biology-online] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape + +[Term] +id: PATO:0001410 +name: striated +def: "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel." [Biology-online:Biology-online] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001411 +name: structured +def: "A structural quality inhering in a bearer by virtue of the bearer's having distinct structure." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0001412 ! unstructured + +[Term] +id: PATO:0001412 +name: unstructured +def: "A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0001411 ! structured + +[Term] +id: PATO:0001413 +name: angular velocity +def: "A physical quality inhering in a bearer by virtue of the rate of the bearer's angular movement about an axis; the angle rotated in a given time." [Wikipedia:http\://en.wikipedia.org/wiki/Angular_velocity] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002242 ! velocity + +[Term] +id: PATO:0001414 +name: catalytic activity +def: "A physical quality inhering in a catalyst by virtue of the amount of the catalyst's action." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001415 +name: morbidity +def: "A quality inhering in a population by virtue of the proportion of its members that are ill at a given time." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002003 ! population quality + +[Term] +id: PATO:0001416 +name: regular duration +def: "A duration which has regular start and/or end times." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001309 ! duration +relationship: is_opposite_of PATO:0001417 ! irregular duration + +[Term] +id: PATO:0001417 +name: irregular duration +def: "A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times." [PATOC:melissa] +subset: value_slim +is_a: PATO:0001309 ! duration +relationship: is_opposite_of PATO:0001416 ! regular duration + +[Term] +id: PATO:0001418 +name: lethargic +def: "A behavioral quality inhering in a bearer by virtue of the bearer's being deficient in alertness or activity." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0002265 ! behavioural activity + +[Term] +id: PATO:0001419 +name: sharp +def: "A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0000944 ! sharpness + +[Term] +id: PATO:0001420 +name: buoyancy +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to rise or float in a fluid medium such as water or air." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001421 +name: alive +def: "A viability quality inhering in a bearer by virtue of the bearer's condition before death." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001422 +name: dead +def: "A viability quality inhering in a bearer by virtue of the cessation of the bearer's life." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001423 +name: refractile +def: "A reflectivity quality inhering in the bearer by virtue of the bearer's ability to refract light." [biology-online:biology-online] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001372 ! refractivity + +[Term] +id: PATO:0001424 +name: violet +def: "A color hue with very low wavelength of that portion of the visible spectrum lying between reddish blue or bluish purple, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 380 nanometers." [Wikipedia:http\://en.wikipedia.org/wiki/Violet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0001425 +name: rosy +def: "A color hue consisting of red hue and yellow hue and high brightness." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0001426 +name: maroon +def: "A color consisting of purple and brown hue." [Wikipedia:http\://en.wikipedia.org/wiki/Maroon] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0001427 +name: compound acidity +def: "A concentration quality inhering in compound by virtue of the bearer's tendency to act as a hydron donor." [chemicool:chemicool] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001842 ! acidity + +[Term] +id: PATO:0001428 +name: medium acidity +def: "A concentration quality inhering in a medium by virtue of the bearer's tendency to hydronate a specific reference base." [chemicool:chemicool] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001842 ! acidity + +[Term] +id: PATO:0001429 +name: acidic +def: "An medium acidity quality inhering in a solution by virtue of the bearer's a high concentration of H+ ions." [chemicool:chemicool] +subset: value_slim +is_a: PATO:0001428 ! medium acidity + +[Term] +id: PATO:0001430 +name: alkaline +def: "An medium acidity quality inhering in a solution by virtue of the bearer's a low concentration of H+ ions." [chemicool:chemicool] +subset: value_slim +is_a: PATO:0001428 ! medium acidity + +[Term] +id: PATO:0001431 +name: adhesivity +def: "An emergent molecular quality that arises by virtue of the bearer's disposition to exhibit molecular attraction to another entity in contact." [PATOC:GVG] +comment: The definition is general enough to cover adhesion arising from different kinds of chemical bonding/forces, although for PATO this term will most commonly used for cellular adhesion. See also GO:0031589 "cell-substrate adhesion". +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "adhesiveness" EXACT [] +synonym: "stickiness" RELATED [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001432 +name: decayed +def: "A quality inhering in a bearer by virtue of the bearer's decomposition into component parts." [Medical-dictionary:Medical-dictionary] +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001433 +name: growth quality of occurrent +alt_id: PATO:0001489 +def: "A quality of a single process which describes the growth of an organism, structure, or group of organisms." [PATOC:MAH] +subset: attribute_slim +synonym: "growth quality of a process" RELATED [] +synonym: "growth timing quality" RELATED [] +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001434 +name: reproductive quality +def: "An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring." [WordNet:WordNet] +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0001435 +name: attachment quality +def: "A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001436 +name: sessile (sensu botany) +def: "An attachment quality inhering in a flower by virtue of the bearer's lacking a stalk, as in flowers or leaves that grow directly from the stem." [Wikipedia:http\://en.wikipedia.org/wiki/Sessility_(botany)] +subset: relational_slim +subset: value_slim +is_a: PATO:0001435 ! attachment quality + +[Term] +id: PATO:0001437 +name: sessile (sensu zoology) +def: "A attachment quality inhering in a bearer by virtue of the bearer's inability to move about." [Wikipedia:http\://en.wikipedia.org/wiki/Sessile_(zoology)] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001435 ! attachment quality + +[Term] +id: PATO:0001438 +name: pedicellate +def: "A attachment quality inhering in a bearer by virtue of the bearer's having or being supported by a pedicel or pedicle." [MedTerms:MedTerms] +subset: relational_slim +subset: value_slim +is_a: PATO:0001435 ! attachment quality + +[Term] +id: PATO:0001439 +name: tonicity +alt_id: PATO:0001498 +def: "A contractile quality inhering in a bearer by virtue of the bearer's elastic tension that facilitate response to stimuli." [WordNet:WordNet] +comment: TODO: we need a clearer differentium between this and contractility - or merge? +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +synonym: "tone" EXACT [] +is_a: PATO:0001579 ! contractility + +[Term] +id: PATO:0001440 +name: homophilic +def: "A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an identical molecule in an adjacent cell." [GO:GO] +subset: relational_slim +subset: value_slim +is_a: PATO:0001531 ! cellular adhesivity +disjoint_from: PATO:0001441 ! heterophilic + +[Term] +id: PATO:0001441 +name: heterophilic +def: "A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an nonidentical molecule in an adjacent cell." [GO:GO] +subset: relational_slim +subset: value_slim +is_a: PATO:0001531 ! cellular adhesivity + +[Term] +id: PATO:0001442 +name: wholeness +def: "A structural quality inhering in a bearer by virtue of whether the bearer includes all its components." [thefreedictionary.com:thefreedictionary.com] +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001444 +name: broken +alt_id: PATO:0001443 +alt_id: PATO:0001820 +def: "A broken quality inhering in a bearer by virtue of the bearer's being broken open." [PATOC:GVG] +subset: value_slim +synonym: "burst" EXACT [] +synonym: "cracked" RELATED [] +synonym: "fractured" EXACT [] +synonym: "fragmented" EXACT [] +synonym: "hemorrhaged" RELATED [] +synonym: "ruptured" EXACT [] +synonym: "split" RELATED [] +synonym: "torn" RELATED [] +is_a: PATO:0001442 ! wholeness +disjoint_from: PATO:0001446 ! whole + +[Term] +id: PATO:0001445 +name: disassembled +def: "A wholeness quality inhering in a bearer by virtue of the bearer's being taken apart into its constituent parts." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0001444 ! broken + +[Term] +id: PATO:0001446 +name: whole +def: "A wholeness quality inhering in a bearer by virtue of the bearer's including all its components." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0001442 ! wholeness + +[Term] +id: PATO:0001447 +name: calcified +def: "A composition quality inhering in an bearer by virtue of the bearer's being encrusted or impregnated with calcium carbonate (CHEBI:3311)." [thefreedictionary.com:thefreedictionary.com] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "calcareous" EXACT [] +synonym: "calcification" NARROW [] +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001448 +name: ossified +def: "A composition quality inhering in an bearer by virtue of the bearer's being hardened by the deposition of calcium into bone." [MAMMALOGY:MAMMALOGY] +subset: value_slim +is_a: PATO:0001447 ! calcified + +[Term] +id: PATO:0001449 +name: cartilaginous +def: "A composition quality inhering in an bearer by virtue of the bearer's cartilage quantities." [Wikipedia:http\://en.wikipedia.org/wiki/Cartilaginous] +comment: Cartilage is a type of dense connective tissue. It is composed of specialized cells called chondrocytes (CL:0000138) that produce a large amount of extracellular matrix composed of collagen fibers, abundant ground substance rich in proteoglycan, and elastin fibers. +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001450 +name: edematous +def: "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of extracellular fluid." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +synonym: "edema" NARROW [] +synonym: "edemic" EXACT [] +synonym: "oedema" NARROW [] +synonym: "oedematous" EXACT [] +synonym: "oedemic" EXACT [] +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001451 +name: obsolete edematous (sensu botany) +def: "An extended swelling in plant organs caused primarily by an excessive accumulation of water." [thefreedictionary.com:thefreedictionary.com] +synonym: "edemic" RELATED [] +synonym: "oedematous" RELATED [] +synonym: "oedemic" RELATED [] +is_obsolete: true + +[Term] +id: PATO:0001453 +name: detached from +def: "An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "detached" EXACT [] +is_a: PATO:0001435 ! attachment quality + +[Term] +id: PATO:0001454 +name: sensitivity to oxygen +def: "A sensitivity quality inhering in a bearer by virtue of the bearer's dependence on oxygen." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000085 ! sensitivity toward + +[Term] +id: PATO:0001455 +name: aerobic +def: "A quality inhering in a bearer by virtue of the bearer's dependence on oxygen." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001454 ! sensitivity to oxygen +disjoint_from: PATO:0001456 ! anaerobic +relationship: is_opposite_of PATO:0001456 ! anaerobic + +[Term] +id: PATO:0001456 +name: anaerobic +def: "A quality inhering in a bearer by virtue of the bearer's independence on oxygen." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001454 ! sensitivity to oxygen +relationship: is_opposite_of PATO:0001455 ! aerobic + +[Term] +id: PATO:0001457 +name: sensitivity of a process +def: "A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "sensitivity of occurrent" EXACT [] +is_a: PATO:0002062 ! physical quality of a process + +[Term] +id: PATO:0001458 +name: sensitivity of a process to oxygen +def: "A sensitivity of a process quality inhering in a bearer by virtue of the bearer's unfolding in a location with or without oxygen." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +synonym: "sensitivity of occurrent to oxygen" EXACT [] +is_a: PATO:0001457 ! sensitivity of a process + +[Term] +id: PATO:0001459 +name: aerobic (for occurrence) +def: "A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001458 ! sensitivity of a process to oxygen +relationship: is_opposite_of PATO:0001460 ! anaerobic (for occurrence) + +[Term] +id: PATO:0001460 +name: anaerobic (for occurrence) +def: "A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001458 ! sensitivity of a process to oxygen +relationship: is_opposite_of PATO:0001459 ! aerobic (for occurrence) + +[Term] +id: PATO:0001461 +name: surface tension +def: "A physical quality inhering in a liquid by virtue of the bearer's ability to attraction of molecules at its surface as a result of unbalanced molecular cohesive forces." [Wikipedia:http\://en.wikipedia.org/wiki/Surface_tension] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001462 +name: membrane potential +def: "A quality inhering in a cell's plasma membrane by virtue of the electrical potential difference across it." [Wikipedia:http\://en.wikipedia.org/wiki/Membrane_potential] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001464 ! electric potential + +[Term] +id: PATO:0001463 +name: action potential +def: "A quality inhering in a cell's plasma membrane by virtue of a brief fluctuation in the bearer's potential caused by the rapid opening and closing of voltage-gated ion channels." [Wikipedia:http\://en.wikipedia.org/wiki/Action_potential] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001464 ! electric potential + +[Term] +id: PATO:0001464 +name: electric potential +def: "A quality that is equal to the potential energy per unit charge associated with a static (time-invariant) electric field, also called the electrostatic potential." [Wikipedia:http\://en.wikipedia.org/wiki/Electric_potential] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001465 +name: monstrous +def: "A malformed quality inhering in a bearer by virtue of the bearer's all-encompassing, grotesque morphological defects." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000646 ! malformed + +[Term] +id: PATO:0001466 +name: curved rostral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the front of an organism." [PATOC:GVG] +subset: value_slim +synonym: "curved anterior" EXACT [] +synonym: "curved superior (human torso)" EXACT [] +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001467 +name: curved caudal +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the part of the body from which the tail arises." [PATOC:GVG] +subset: value_slim +synonym: "curved inferior (human torso)" EXACT [] +synonym: "curved posterior" EXACT [] +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001468 +name: curved dorsal +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the back or upper surface of an organism." [PATOC:GVG] +subset: value_slim +synonym: "curved posterior (human torso)" EXACT [] +synonym: "curved superior (human head)" EXACT [] +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001469 +name: curved ventral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the abdomen of an organism." [PATOC:GVG] +subset: value_slim +synonym: "curved anterior (human torso)" EXACT [] +synonym: "curved inferior (human head)" EXACT [] +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001470 +name: proportionality to +def: "A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity." [PATOC:nw] +comment: Examples: height to weight; brain size to body size. These could all be children of proportionality. Proportions can be measured as ratios. Some measures may be dimensionless. Not all ratios measure proportionality, eg m/s measures velocity which is not a proportion in the sense defined above, it is a quality in its own right. +subset: attribute_slim +subset: relational_slim +synonym: "proportion" EXACT [] +synonym: "proportionality" EXACT [] +synonym: "quotient" EXACT [] +synonym: "rate" RELATED [] +synonym: "ratio" EXACT [] +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001472 +name: decreased depth +alt_id: PATO:0001692 +def: "A depth which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low depth" EXACT [] +synonym: "shallow" EXACT [] +is_a: PATO:0000587 ! decreased size +is_a: PATO:0001595 ! depth +intersection_of: PATO:0001595 ! depth +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001596 ! increased depth + +[Term] +id: PATO:0001473 +name: duplicated +def: "A quality inhering in a bearer by virtue of the bearer's being present in two copies." [Dictionary.com:Dictionary.com] +subset: mpath_slim +subset: value_slim +synonym: "doubled" EXACT [] +is_a: PATO:0000470 ! increased amount + +[Term] +id: PATO:0001474 +name: anteverted +def: "An oriented quality inhering in a bearer by virtue of the bearer's axis being positioned forward." [bdid:bdid] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000614 ! oriented + +[Term] +id: PATO:0001475 +name: increased position +def: "A position which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high position" RELATED [] +is_a: PATO:0000140 ! position +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000140 ! position +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001476 ! decreased position + +[Term] +id: PATO:0001476 +name: decreased position +def: "A positional which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low position" RELATED [] +is_a: PATO:0000140 ! position +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000140 ! position +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001475 ! increased position + +[Term] +id: PATO:0001477 +name: retracted +def: "A positional quality inhering in a bearer by virtue of the bearer's being drawn in or pulled back from any given point." [Dictionary.com:Dictionary.com] +subset: value_slim +synonym: "moved" BROAD [] +synonym: "retruded" RELATED [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001478 +name: collapsed +def: "A structural quality inhering in a bearer by virtue of the bearer's being broken down; caved in." [Dictionary.com:Dictionary.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001480 +name: spongy +def: "A structural quality inhering in a bearer by virtue of the bearer's resembling a sponge in elasticity, absorbency, or porousness." [Answers.com:Answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +relationship: has_part PATO:0000982 ! permeable + +[Term] +id: PATO:0001481 +name: sloped +def: "A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001482 +name: prominent +def: "A quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line." [Dictionary.com:Dictionary.com] +subset: value_slim +is_a: PATO:0001598 ! protruding +is_a: PATO:0015007 ! prominence + +[Term] +id: PATO:0001483 +name: aplastic +def: "Absence of an organ, tissue or cell due to failure to develop from a primordium or precursor cell." [PATOC:GVG, PATOC:PortlandMeetingFeb2015] +comment: With aplasia, the primordium or precursor develops, but does not proceed in its development to a mature structure +subset: mpath_slim +subset: value_slim +synonym: "aplasia" EXACT [] +synonym: "undeveloped" EXACT [] +is_a: PATO:0002290 ! aplastic/hypoplastic +is_a: PATO:0002291 ! agenesis +intersection_of: PATO:0002290 ! aplastic/hypoplastic +intersection_of: PATO:0002291 ! agenesis + +[Term] +id: PATO:0001484 +name: recent +def: "A quality of a process which occurs near to or not long before the present." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0002325 ! onset quality + +[Term] +id: PATO:0001485 +name: condensed +alt_id: PATO:0001840 +def: "A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "compact" BROAD [] +synonym: "compressed" EXACT [] +synonym: "dense" RELATED [] +synonym: "squashed" EXACT [] +is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0002452 ! decondensed + +[Term] +id: PATO:0001486 +name: chronological age +def: "An age quality that exists by virtue of the time (years and months) that the bearer has existed." [WordNet:Wordnet] +subset: attribute_slim +is_a: PATO:0000011 ! age + +[Term] +id: PATO:0001487 +name: senescent +def: "A time quality inhering in a bearer by virtue of the bearer's growing old; aging." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000011 ! age + +[Term] +id: PATO:0001488 +name: cellular motility +def: "A cellular quality inhering in a cell by virtue of whether the bearer exhibits the ability to move spontaneously." [thefreedictionary.com:thefreedictionary.com] +comment: Term should be obsoleted and the GO term cellular motility should be used instead. +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001396 ! cellular quality + +[Term] +id: PATO:0001490 +name: heterochronic growth +def: "A growth quality of a process inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced or increased growth." [PATOC:MAH] +subset: value_slim +is_a: PATO:0001433 ! growth quality of occurrent + +[Term] +id: PATO:0001491 +name: neotenous growth +def: "A paedomorphic growth quality which is due to a reduced rate." [PATOC:mh] +subset: value_slim +synonym: "neotenic growth" EXACT [] +is_a: PATO:0001749 ! paedomorphic growth + +[Term] +id: PATO:0001492 +name: growth rate +comment: This term will be obsoleted; Use GO:growth and PATO:rate. +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0050001 ! rate of continuous process + +[Term] +id: PATO:0001493 +name: hypertrophic growth +comment: This term will be obsoleted; Use GO:growth and PATO:rate. +subset: value_slim +is_a: PATO:0001492 ! growth rate +relationship: is_opposite_of PATO:0001494 ! hypotrophic growth + +[Term] +id: PATO:0001494 +name: hypotrophic growth +comment: This term will be obsoleted; Use GO:growth and PATO:rate. +subset: value_slim +is_a: PATO:0001492 ! growth rate +relationship: is_opposite_of PATO:0001493 ! hypertrophic growth + +[Term] +id: PATO:0001495 +name: notched +def: "A concave quality inhering in a bearer by virtue of the bearer's shape being a V-shaped cut." [thefreedictionary.com:thefreedictionary.com] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "indented" RELATED [] +is_a: PATO:0001857 ! concave + +[Term] +id: PATO:0001496 +name: brood quality +def: "A reproductive quality inhering in the young of an animal by virtue of the bearer's being cared for at one time." [WordNet:WordNet] +subset: attribute_slim +is_a: PATO:0001434 ! reproductive quality + +[Term] +id: PATO:0001497 +name: brood viability +def: "A reproductive quality inhering in the young of an animal by virtue of the bearer's disposition to survive and develop normally." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001499 +name: spherical +alt_id: PATO:0000408 +def: "A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter)." [WordNet:WordNet] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "globular" EXACT [] +synonym: "rotund" RELATED [] +is_a: PATO:0001865 ! spheroid +relationship: has_cross_section PATO:0000411 ! circular + +[Term] +id: PATO:0001500 +name: tapered +def: "A shape quality inhering in a bearer by virtue of the bearer's being gradually narrower or thinner toward one end." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +synonym: "taper" EXACT [] +is_a: PATO:0001419 ! sharp + +[Term] +id: PATO:0001501 +name: immature +def: "A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] +subset: value_slim +synonym: "underdeveloped" RELATED [] +is_a: PATO:0000261 ! maturity +relationship: is_opposite_of PATO:0001701 ! mature + +[Term] +id: PATO:0001502 +name: complexity +def: "A monadic quality of continuant inhering in a bearer by virtue of the bearer's being intricate and compounded." [WordNet:WordNet] +comment: TODO: obsolete this. +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001503 +name: simple +def: "A complexity quality in a bearer by virtue of the bearer's having few parts or being complicated or compound." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001502 ! complexity +disjoint_from: PATO:0001504 ! complex + +[Term] +id: PATO:0001504 +name: complex +def: "A complexity quality inhering in a bearer by virtue of the bearer's being intricate and compounded." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001502 ! complexity + +[Term] +id: PATO:0001505 +name: separated from +def: "A structural quality inhering in a bearer by virtue of the bearer's not being in contact with another entity, or of no longer being connected or joined with another entity." [WordNet:WordNet] +subset: relational_slim +subset: value_slim +synonym: "discontiguous" RELATED [] +synonym: "divided_from" RELATED [] +synonym: "splitted from" RELATED [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001506 +name: diastatic +def: "A structural quality inhering in a bearer by virtue of the bearer's separation of normally joined parts, such as the separation of adjacent bones without fracture or of certain abdominal muscles during pregnancy." [answers.com:answers.com] +subset: relational_slim +subset: value_slim +is_a: PATO:0001505 ! separated from + +[Term] +id: PATO:0001507 +name: disrupted +def: "A quality of a single process inhering in a bearer by virtue of the bearer's being interrupted of its normal course." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000057 ! occurrence + +[Term] +id: PATO:0001509 +name: functionality +def: "A quality of a single physical entity that arises by virtue of whether the bearer exhibits the ability to perform a regular function(s)." [PATOC:MAH] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001510 +name: functional +def: "A functionality quality held by the bearer when the latter is able to perform a regular function(s)." [PATOC:MAH] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001509 ! functionality +relationship: is_opposite_of PATO:0001511 ! non-functional + +[Term] +id: PATO:0001511 +name: non-functional +alt_id: PATO:0001640 +def: "A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s)." [PATC:MAH] +subset: disposition_slim +subset: value_slim +synonym: "defective" RELATED [] +synonym: "disfunctional" EXACT [] +synonym: "failure" RELATED [] +synonym: "functional failure" EXACT [] +is_a: PATO:0001509 ! functionality +relationship: is_opposite_of PATO:0001510 ! functional + +[Term] +id: PATO:0001512 +name: punctate +def: "A pattern inhering in a surface by virtue of the bearer's being marked by the presence of dots, punctures, points or pits." [medical-dictionary:medical-dictionary] +subset: mpath_slim +subset: value_slim +synonym: "dotted" RELATED [] +synonym: "spotted" RELATED [] +synonym: "stippled" RELATED [] +is_a: PATO:0000330 ! irregular spatial pattern + +[Term] +id: PATO:0001514 +name: delaminated +def: "A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer." [PATOC:cjm] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001515 +name: variable color +def: "A color quality inhering in a bearer by virtue of the bearer's being uneven in color." [PATOC:NC] +subset: value_slim +synonym: "murky" RELATED [] +is_a: PATO:0000019 ! color pattern + +[Term] +id: PATO:0001516 +name: focus +def: "An optical quality where light rays originating from a point on the object converge." [Wikipedia:http\://en.wikipedia.org/wiki/Focus_(optics)] +subset: attribute_slim +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0001517 +name: focused +def: "An optical quality inhering in a bearer by virtue of the bearer's having focus." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001516 ! focus + +[Term] +id: PATO:0001518 +name: blurry +def: "An optical quality inhering in a bearer by virtue of the bearer's lacking focus." [PATOC:NC] +subset: value_slim +is_a: PATO:0001516 ! focus + +[Term] +id: PATO:0001519 +name: sound quality +def: "A quality inhering in a bearer by virtue of vibration, as perceived by the sense of hearing." [Wikipedia:http\://en.wikipedia.org/wiki/Sound_quality] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001520 +name: sound frequency +def: "The frequency of transmitted vibrations." [thefreedictionary.com:thefreedictionary.com] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000044 ! frequency + +[Term] +id: PATO:0001521 +name: sound amplitude +def: "A physical quality inhering in a sound wave by virtue of the maximum magnitude (value without regard to sign) of its disturbance." [answers.com:answers.com] +subset: attribute_slim +synonym: "loudness" BROAD [] +is_a: PATO:0000080 ! amplitude + +[Term] +id: PATO:0001522 +name: sound speed +def: "A physical quality inhering in sound by virtue of the bearer's travelling speed in a given medium under specified conditions." [Wikipedia:http\://en.wikipedia.org/wiki/Sound_speed] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000008 ! speed + +[Term] +id: PATO:0001523 +name: sound wavelength +def: "A physical quality which is equal to the quotient of the speed of a sound wave divided by its wavelength." [Wikipedia:http\://en.wikipedia.org/wiki/Sound_wavelength] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001242 ! wavelength + +[Term] +id: PATO:0001524 +name: intrasonic +def: "A sound frequency in the range of 0-20 Hz." [studyphysics:studyphysics] +subset: value_slim +is_a: PATO:0001520 ! sound frequency + +[Term] +id: PATO:0001525 +name: sonic +def: "A sound frequency in the range of 20 to 20.000 Hz." [url:http\://www.studyphysics.ca/] +subset: value_slim +is_a: PATO:0001520 ! sound frequency + +[Term] +id: PATO:0001526 +name: ultrasonic +def: "A sound frequency in the range of 20 000 + Hz." [studyphysics:studyphysics] +subset: value_slim +is_a: PATO:0001520 ! sound frequency + +[Term] +id: PATO:0001527 +name: quiet +def: "A sound amplitude which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001519 ! sound quality + +[Term] +id: PATO:0001528 +name: loud +def: "A sound amplitude which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001519 ! sound quality + +[Term] +id: PATO:0001529 +name: cellular spatiotemporal quality +def: "A spatiotemporal quality inhering in a cell." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001530 +name: behavioral quality of a process +def: "A quality of a single process inhering in a bearer by virtue of the bearer's behavior." [PATOC:GVG] +subset: attribute_slim +synonym: "behavioral quality of occurrent" EXACT [] +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001531 +name: cellular adhesivity +def: "A cellular quality that exists by virtue of the disposition of the cell to adhere to other cells and molecules, through the emergent action of the molecular parts of the cell surface." [PATOC:cjm] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001396 ! cellular quality +is_a: PATO:0001431 ! adhesivity + +[Term] +id: PATO:0001532 +name: mono-colored +def: "A color pattern inhering in a bearer by virtue of the bearer's having one hue." [PATOC:GVG] +subset: value_slim +synonym: "evenly colored" EXACT [] +synonym: "homogeneously colored" EXACT [] +synonym: "homogenously pigmented" RELATED [] +synonym: "uniformly colored" EXACT [] +is_a: PATO:0000019 ! color pattern + +[Term] +id: PATO:0001533 +name: multi-colored +def: "A color pattern inhering in a bearer by virtue of bearer's having two or more hues or degrees of saturation." [PATOC:GVG] +subset: value_slim +synonym: "variegated" EXACT [] +is_a: PATO:0000019 ! color pattern + +[Term] +id: PATO:0001534 +name: motley +def: "A color pattern inhering in a bearer by virtue of bearer's having 3 or more hues or degrees of saturations." [merriam-webster.:merriam-webster.] +subset: value_slim +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0001535 +name: dappled +def: "A color pattern inhering in a bearer by virtue of bearer's being marked with small spots, patches, or specks of hue or degree of saturation differing from that of the background." [merriam-webster.:merriam-webster.] +subset: value_slim +synonym: "speckled" RELATED [] +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0001536 +name: solubility +def: "A molecular quality that inheres in a molecular entity by virtue of the bearer's disposition to dissolve in a liquid." [edp:edp] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality + +[Term] +id: PATO:0001537 +name: soluble in +def: "A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid." [edp:edp] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "soluble" EXACT [] +is_a: PATO:0001536 ! solubility +disjoint_from: PATO:0001538 ! insoluble in +relationship: is_opposite_of PATO:0001538 ! insoluble in + +[Term] +id: PATO:0001538 +name: insoluble in +def: "A solubility quality inhering in a substance by virtue of the bearer's inability of a substance to dissolve in a liquid." [edp:edp] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "insoluble" EXACT [] +is_a: PATO:0001536 ! solubility +relationship: is_opposite_of PATO:0001537 ! soluble in + +[Term] +id: PATO:0001539 +name: amylose composition +def: "A compositional quality inhering in an bearer by virtue of the bearer's quantities or relative ratios of amylose of the inhering entity." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +synonym: "amylose compositionality" EXACT [] +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001540 +name: glutinous +def: "An amylose composition quality inhering in an bearer by virtue of the bearer's having negligible or no amylose content." [TO:TO] +subset: value_slim +is_a: PATO:0001539 ! amylose composition + +[Term] +id: PATO:0001541 +name: non-glutinous +def: "An amylose composition quality inhering in an bearer by virtue of the bearer's having high amount of amylose content." [TO:TO] +subset: value_slim +is_a: PATO:0001539 ! amylose composition + +[Term] +id: PATO:0001542 +name: delayed phase +def: "A phase which starts later than natural start point." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0001543 +name: flexibility +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking." [merriam-webster:merriam-webster] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001546 ! quality of a solid + +[Term] +id: PATO:0001544 +name: flexible +def: "A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking." [merriam-webster:merriam-webster] +subset: disposition_slim +subset: value_slim +synonym: "bendy" EXACT [] +is_a: PATO:0001543 ! flexibility +relationship: is_opposite_of PATO:0001545 ! inflexible + +[Term] +id: PATO:0001545 +name: inflexible +def: "A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking." [merriam-webster:merriam-webster] +subset: disposition_slim +subset: value_slim +synonym: "stiff" EXACT [] +synonym: "stiffness" RELATED [] +is_a: PATO:0001543 ! flexibility +relationship: is_opposite_of PATO:0001544 ! flexible + +[Term] +id: PATO:0001546 +name: quality of a solid +def: "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity characterized by particles arranged such that their shape and volume are relatively stable." [Chemistry:http\://chemistry.about.com/od/chemistryglossary/a/soliddefinition.htm] +subset: attribute_slim +synonym: "solidity" EXACT [] +is_a: PATO:0002198 ! quality of a substance + +[Term] +id: PATO:0001547 +name: quality of a gas +def: "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape." [Chemistry:http\://chemistry.about.com/od/chemistryglossary/a/gasdefinition.htm, PATOC:GVG] +subset: attribute_slim +synonym: "gaseous" EXACT [] +is_a: PATO:0002198 ! quality of a substance + +[Term] +id: PATO:0001548 +name: quality of a liquid +def: "A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape." [url:http\://www.chemistry-dictionary.com/definition/liquid.php] +subset: attribute_slim +synonym: "liquidity" EXACT [] +is_a: PATO:0002198 ! quality of a substance + +[Term] +id: PATO:0001549 +name: increased sensitivity toward +def: "A sensitivity toward an external stimulus which is higher than normal/average." [PATO:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high sensitivity toward" EXACT [] +synonym: "increased sensitivity" EXACT [] +is_a: PATO:0000516 ! sensitive toward +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000516 ! sensitive toward +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001550 ! decreased sensitivity toward + +[Term] +id: PATO:0001550 +name: decreased sensitivity toward +def: "A sensitivity toward an external stimulus which is lower than normal/average." [PATO:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "decreased sensitivity" EXACT [] +synonym: "low sensitivity toward" EXACT [] +is_a: PATO:0000516 ! sensitive toward +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000516 ! sensitive toward +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001549 ! increased sensitivity toward + +[Term] +id: PATO:0001551 +name: increased sensitivity of a process +def: "A sensitivity of a process which is higher than normal or average." [PATO:GVG] +subset: relational_slim +subset: value_slim +synonym: "high sensitivity of occurrent" EXACT [] +synonym: "increased sensitivity of occurrent" EXACT [] +is_a: PATO:0001457 ! sensitivity of a process +is_a: PATO:0002304 ! increased process quality +intersection_of: PATO:0001457 ! sensitivity of a process +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001552 ! decreased sensitivity of a process + +[Term] +id: PATO:0001552 +name: decreased sensitivity of a process +def: "A sensitivity of a process which is lower than normal or average." [PATO:GVG] +subset: relational_slim +subset: value_slim +synonym: "decreased sensitivity of occurrent" EXACT [] +synonym: "low sensitivity of occurrent" EXACT [] +is_a: PATO:0001457 ! sensitivity of a process +is_a: PATO:0002302 ! decreased process quality +intersection_of: PATO:0001457 ! sensitivity of a process +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001551 ! increased sensitivity of a process + +[Term] +id: PATO:0001553 +name: increased sensitivity of a process to oxygen +def: "A sensitivity of occurrent to oxygen which is higher than normal or average." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high sensitivity of occurrent to oxygen" EXACT [] +is_a: PATO:0001459 ! aerobic (for occurrence) +is_a: PATO:0001551 ! increased sensitivity of a process +intersection_of: PATO:0001459 ! aerobic (for occurrence) +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001554 ! decreased sensitivity of a process to oxygen + +[Term] +id: PATO:0001554 +name: decreased sensitivity of a process to oxygen +def: "A sensitivity of a process to oxygen which is lower than normal or average." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low sensitivity of occurrent to oxygen" EXACT [] +is_a: PATO:0001459 ! aerobic (for occurrence) +is_a: PATO:0001552 ! decreased sensitivity of a process +intersection_of: PATO:0001459 ! aerobic (for occurrence) +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001553 ! increased sensitivity of a process to oxygen + +[Term] +id: PATO:0001555 +name: has number of +def: "The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts." [PATOC:CJM] +subset: attribute_slim +subset: relational_slim +synonym: "cardinality" RELATED [] +synonym: "extra or missing physical or functional parts" EXACT [] +synonym: "has or lacks parts of type" EXACT [] +synonym: "mereological quality" EXACT [] +synonym: "number" RELATED [] +synonym: "number of" EXACT [] +xref: OBO_REL:has_part +is_a: PATO:0001241 ! physical object quality +relationship: reciprocal_of PATO:0000070 ! amount + +[Term] +id: PATO:0001558 +name: lacking processual parts +def: "A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001564 ! extra or missing processual parts +relationship: reciprocal_of PATO:0000462 ! absent + +[Term] +id: PATO:0001559 +name: having extra function +def: "A functionality quality which is held by the bearer when the latter is able to perform additional or different function(s)." [PATO:MAH] +subset: disposition_slim +subset: value_slim +synonym: "having supernumerary functions" EXACT [] +is_a: PATO:0001509 ! functionality +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001509 ! functionality +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal + +[Term] +id: PATO:0001561 +name: having extra processual parts +def: "A quality of a process inhering in a bearer by virtue of the bearer's having additional processual parts." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "having supernumerary processual parts" EXACT [] +is_a: PATO:0001564 ! extra or missing processual parts + +[Term] +id: PATO:0001562 +name: decreased mass +alt_id: PATO:0000579 +def: "A mass which is lower than normal or average." [PATO:GVG] +subset: value_slim +synonym: "low mass" EXACT [] +synonym: "small mass" EXACT [] +is_a: PATO:0000125 ! mass +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000125 ! mass +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001563 ! increased mass + +[Term] +id: PATO:0001563 +name: increased mass +alt_id: PATO:0000578 +def: "A mass which is higher than normal or average." [PATO:GVG] +subset: value_slim +synonym: "high mass" EXACT [] +synonym: "large mass" EXACT [] +is_a: PATO:0000125 ! mass +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000125 ! mass +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001562 ! decreased mass + +[Term] +id: PATO:0001564 +name: extra or missing processual parts +def: "A quality of a process inhering in a bearer by virtue of the bearer's processual parts." [PATOC:GVG] +subset: relational_slim +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001566 +name: distributed +alt_id: PATO:0001513 +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +synonym: "diffuse" EXACT [] +synonym: "scattered" EXACT [] +is_a: PATO:0000060 ! spatial pattern +disjoint_from: PATO:0001629 ! aggregated +relationship: is_opposite_of PATO:0001567 ! undistributed + +[Term] +id: PATO:0001567 +name: undistributed +def: "A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +relationship: is_opposite_of PATO:0001566 ! distributed + +[Term] +id: PATO:0001570 +name: having decreased processual parts +def: "A quality of a process inhering in a bearer by virtue of the bearer's having fewer processual parts." [PATO:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001564 ! extra or missing processual parts + +[Term] +id: PATO:0001571 +name: dilated +def: "A size quality inhering in a bearer by virtue of the bearer's being made wider or larger in all dimensions." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000586 ! increased size + +[Term] +id: PATO:0001573 +name: isometrical +def: "A symmetry quality inhering in a bearer by virtue of the bearer's having equal dimensions or measurements." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0000965 ! symmetry + +[Term] +id: PATO:0001574 +name: flow rate +def: "A physical quality inhering in a bearer by virtue of the bearer's motion characteristic." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001906 ! movement quality + +[Term] +id: PATO:0001575 +name: decreased pressure +def: "A pressure which is relatively low." [PATO:GVG] +subset: value_slim +synonym: "low pressure" EXACT [] +is_a: PATO:0001025 ! pressure +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001025 ! pressure +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001576 ! increased pressure + +[Term] +id: PATO:0001576 +name: increased pressure +def: "A pressure which is relatively high." [PATO:GVG] +subset: value_slim +synonym: "high pressure" EXACT [] +is_a: PATO:0001025 ! pressure +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001025 ! pressure +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001575 ! decreased pressure + +[Term] +id: PATO:0001577 +name: increased permeability +def: "A permeability which is relatively high." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high permeability" EXACT [] +is_a: PATO:0000982 ! permeable +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000982 ! permeable +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001578 ! decreased permeability + +[Term] +id: PATO:0001578 +name: decreased permeability +def: "A permeability which is relatively low." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low permeability" EXACT [] +is_a: PATO:0000982 ! permeable +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000982 ! permeable +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001577 ! increased permeability + +[Term] +id: PATO:0001579 +name: contractility +def: "A physical quality that is the ability to contract or shrink." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001580 +name: increased contractility +def: "A contractility which is relatively high." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high contractility" EXACT [] +is_a: PATO:0001690 ! contractile +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001690 ! contractile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001581 ! decreased contractility + +[Term] +id: PATO:0001581 +name: decreased contractility +def: "A contractility which is relatively low." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low contractility" EXACT [] +is_a: PATO:0001690 ! contractile +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001690 ! contractile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001580 ! increased contractility + +[Term] +id: PATO:0001582 +name: obsolete relaxational quality +def: "A spatial quality inhering in an inactive muscle or muscle fibers by virtue of the bearer's exhibiting gradual lengthening." [WordNet:WordNet] +comment: GO has now relevant relation terms which should be used instead. +is_obsolete: true + +[Term] +id: PATO:0001583 +name: decreased variability +def: "A variability which is relatively low." [PATO:GVG] +subset: value_slim +synonym: "low variability" EXACT [] +intersection_of: PATO:0001227 ! variant +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001584 ! increased variability + +[Term] +id: PATO:0001584 +name: increased variability +def: "A variability which is relatively high." [PATO:GVG] +subset: value_slim +synonym: "high variability" EXACT [] +intersection_of: PATO:0001227 ! variant +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001583 ! decreased variability + +[Term] +id: PATO:0001585 +name: conductivity +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to transmit of an entity through a medium." [PATOC:GVG] +comment: Examples could be heat or electricity or sound. +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001586 +name: variability of rate +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits rate variation or change." [PATO:GVG] +subset: value_slim +is_a: PATO:0001303 ! variability +relationship: towards PATO:0000161 ! rate + +[Term] +id: PATO:0001587 +name: increased variability of rate +def: "A variability of rate which is relatively high." [PATO:GVG] +subset: value_slim +synonym: "high variability of rate" EXACT [] +intersection_of: PATO:0001586 ! variability of rate +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001588 ! decreased variability of rate + +[Term] +id: PATO:0001588 +name: decreased variability of rate +def: "A variability of rate which is relatively low." [PATO:GVG] +subset: value_slim +synonym: "low variability of rate" EXACT [] +intersection_of: PATO:0001586 ! variability of rate +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001587 ! increased variability of rate + +[Term] +id: PATO:0001589 +name: obsolete enhanced +def: "Increased, intensified." [PATOC:GVG] +comment: Obsoleted because it used to be a child of behavioral quality, which really meant increased magnitude of a given behavior. Now this can be done by using increased magnitude with another quality. +is_obsolete: true +consider: PATO:0002017 + +[Term] +id: PATO:0001590 +name: overlap with +def: "A structural quality inhering in a bearer by virtue of the bearer's coinciding spatially, partially or wholly with another entity." [PATO:GVG] +subset: relational_slim +subset: value_slim +synonym: "overlap" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001591 +name: curvature +def: "A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending." [WordNet:WordNet] +subset: attribute_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001592 +name: increased curvature +def: "A curvature which is relatively high." [PATO:GVG] +subset: value_slim +is_a: PATO:0000406 ! curved +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000406 ! curved +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001593 ! decreased curvature + +[Term] +id: PATO:0001593 +name: decreased curvature +def: "A curvature which is relatively low." [PATO:GVG] +subset: value_slim +is_a: PATO:0000406 ! curved +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000406 ! curved +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001592 ! increased curvature + +[Term] +id: PATO:0001594 +name: arched +def: "A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch." [WordNet:WordNet] +subset: cell_quality +is_a: PATO:0001857 ! concave + +[Term] +id: PATO:0001595 +name: depth +def: "A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimenision." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0001596 +name: increased depth +alt_id: PATO:0001666 +def: "A depth quality which is relatively high." [PATO:GVG] +subset: value_slim +synonym: "deep" EXACT [] +is_a: PATO:0000586 ! increased size +is_a: PATO:0001595 ! depth +intersection_of: PATO:0001595 ! depth +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001472 ! decreased depth + +[Term] +id: PATO:0001597 +name: everted +def: "An oriented quality inhering in a bearer by virtue of the bearer's being turned outward in placement." [thefreedictionary:thefreedictionary] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000614 ! oriented + +[Term] +id: PATO:0001598 +name: protruding +alt_id: PATO:0001644 +def: "A quality inhering in a bearer by virtue of the bearer's extending out above or beyond a surface or boundary." [WordNet:WordNet] +subset: value_slim +synonym: "protruding" EXACT [] +synonym: "relational protruding quality" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001599 +name: rotated +def: "An oriented quality inhering in a bearer by virtue of the bearer's being relocated around an axis." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "rotation" EXACT [] +is_a: PATO:0000614 ! oriented + +[Term] +id: PATO:0001600 +name: posteriorly rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the rear of organism." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001599 ! rotated + +[Term] +id: PATO:0001601 +name: anteriorly rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the front of an organism." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001599 ! rotated + +[Term] +id: PATO:0001602 +name: distended +def: "A size quality inhering in a bearer by virtue of the bearer's being abnormally expanded or increased in size." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +synonym: "expanded" RELATED [] +is_a: PATO:0000586 ! increased size + +[Term] +id: PATO:0001603 +name: increased life span +def: "A life span which is relatively high." [PATO:GVG] +synonym: "high life span" EXACT [] +is_a: PATO:0000050 ! life span +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000050 ! life span +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001604 ! decreased life span + +[Term] +id: PATO:0001604 +name: decreased life span +def: "A life span which is relatively low." [PATO:GVG] +synonym: "low life span" EXACT [] +is_a: PATO:0000050 ! life span +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000050 ! life span +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001603 ! increased life span + +[Term] +id: PATO:0001605 +name: disheveled +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being in disarray; extremely disorderly." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0000330 ! irregular spatial pattern + +[Term] +id: PATO:0001606 +name: greasy +def: "A coating which is oily and slippery." [.answers.com:.answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002012 ! coating + +[Term] +id: PATO:0001607 +name: matted +def: "A tangled quality inhering in a bearer by virtue of the bearer's being not possible to unravel." [PATOC:MAH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001846 ! tangled + +[Term] +id: PATO:0001608 +name: patchy +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being marked by, consisting of, or diversified with patches." [Merriam-Webster:Merriam-Webster] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000330 ! irregular spatial pattern + +[Term] +id: PATO:0001609 +name: sparse +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being scattered; spread irregularly, and at a distance from each other." [biology.lsu:biology.lsu] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0001611 +name: variability of color +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits color variation or change." [PATO:GVG] +subset: attribute_slim +is_a: PATO:0001303 ! variability +relationship: towards PATO:0000014 ! color + +[Term] +id: PATO:0001612 +name: increased variability of color +def: "A variability of color which is relatively high." [PATO:GVG] +subset: value_slim +synonym: "high variability of color" EXACT [] +intersection_of: PATO:0001615 ! variant color +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001613 ! decreased variability of color + +[Term] +id: PATO:0001613 +name: decreased variability of color +def: "A variability of color which is relatively low." [PATO:GVG] +subset: value_slim +synonym: "low variability of color" EXACT [] +intersection_of: PATO:0001615 ! variant color +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001612 ! increased variability of color + +[Term] +id: PATO:0001614 +name: invariant color +def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color." [PATO:GVG] +subset: value_slim +is_a: PATO:0001611 ! variability of color +relationship: is_opposite_of PATO:0001615 ! variant color + +[Term] +id: PATO:0001615 +name: variant color +def: "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour." [PATO:GVG] +subset: value_slim +is_a: PATO:0001611 ! variability of color +relationship: is_opposite_of PATO:0001614 ! invariant color + +[Term] +id: PATO:0001617 +name: deformed +def: "A morphological quality inhering in a bearer by virtue of the bearer's being distorted in form." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +synonym: "disfigured" RELATED [] +synonym: "distorted" RELATED [] +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0001618 +name: increased tonicity +def: "A tonicity which is relatively high." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high tonicity" EXACT [] +is_a: PATO:0001439 ! tonicity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001439 ! tonicity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001619 ! decreased tonicity + +[Term] +id: PATO:0001619 +name: decreased tonicity +def: "A tonicity which is relatively low." [PATO:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low tonicity" EXACT [] +is_a: PATO:0001439 ! tonicity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001439 ! tonicity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001618 ! increased tonicity + +[Term] +id: PATO:0001620 +name: turgor +def: "A structural quality inhering in a cell or blood vessel or capillary by virtue of the bearer's being in a rigid state of fullness resulting from pressure of the contents against the wall or membrane." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001621 +name: decreased turgor +def: "A turgor which is relatively low." [PATO:GVG] +subset: cell_quality +subset: value_slim +synonym: "low turgor" EXACT [] +is_a: PATO:0001620 ! turgor +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001620 ! turgor +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001622 ! increased turgor + +[Term] +id: PATO:0001622 +name: increased turgor +def: "A turgor which is relatively high." [PATO:GVG] +subset: cell_quality +subset: value_slim +synonym: "high turgor" EXACT [] +is_a: PATO:0001620 ! turgor +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001620 ! turgor +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001621 ! decreased turgor + +[Term] +id: PATO:0001623 +name: atrophied +def: "A size quality inhering in a bearer by virtue of a part or parts of the bearer's being decreased in size due to reduction in tissue mass through wasting." [Wiikipedia:Wasting, Wikipedia:Atrophy] +subset: mpath_slim +subset: value_slim +synonym: "atrophic" EXACT [] +is_a: PATO:0000587 ! decreased size + +[Term] +id: PATO:0001624 +name: decreased functionality +alt_id: PATO:0001556 +alt_id: PATO:0001568 +alt_id: PATO:0001641 +alt_id: PATO:0001642 +def: "A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s)." [PATO:MAH] +subset: disposition_slim +subset: value_slim +synonym: "dysfunction" BROAD [] +synonym: "dysfunctional" BROAD [] +synonym: "having decreased function" EXACT [] +synonym: "impaired" RELATED [] +synonym: "lacks function of type" EXACT [] +synonym: "low functionality" EXACT [] +synonym: "partial functionality" EXACT [] +is_a: PATO:0001510 ! functional +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001510 ! functional +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001625 ! increased functionality + +[Term] +id: PATO:0001625 +name: increased functionality +def: "A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s)." [PATO:MAH] +subset: disposition_slim +subset: value_slim +synonym: "high functionality" EXACT [] +is_a: PATO:0001510 ! functional +is_a: PATO:0001559 ! having extra function +intersection_of: PATO:0001510 ! functional +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001624 ! decreased functionality + +[Term] +id: PATO:0001626 +name: sufficiency +def: "A structural quality inhering in a bearer by virtue of whether the bearer has enough functionality." [PATO:GVG] +comment: This term and children should probably be obsoleted. +subset: attribute_slim +synonym: "adequacy" RELATED [] +is_a: PATO:0001509 ! functionality + +[Term] +id: PATO:0001627 +name: sufficient +def: "A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality." [PATO:GVG] +subset: value_slim +synonym: "adequate" RELATED [] +is_a: PATO:0001626 ! sufficiency +relationship: is_opposite_of PATO:0001628 ! insufficient + +[Term] +id: PATO:0001628 +name: insufficient +def: "A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality." [PATO:GVG] +subset: value_slim +synonym: "inadequate" RELATED [] +is_a: PATO:0001626 ! sufficiency +relationship: is_opposite_of PATO:0001627 ! sufficient + +[Term] +id: PATO:0001629 +name: aggregated +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +synonym: "clumped" EXACT [] +synonym: "clustered" EXACT [] +is_a: PATO:0000330 ! irregular spatial pattern + +[Term] +id: PATO:0001630 +name: dispersed +def: "A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent." [WordNet:WordNet] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001632 +name: anterior to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front of an organism relative to another entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "preceding" EXACT [] +synonym: "ventral_to" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001633 +name: posterior to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear of an organism relative to another entity." [PATOC:nw] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "posterior (human torso)" EXACT [] +synonym: "superior (human head)" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001634 +name: necessity (continuant) +def: "A quality of a single physical entity inhering in a bearer by virtue of whether the bearer is essential or indispensable." [WordNet:WordNet] +subset: attribute_slim +is_a: PATO:0001509 ! functionality + +[Term] +id: PATO:0001635 +name: necessary (continuant) +def: "A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being essential or indispensable." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001634 ! necessity (continuant) +disjoint_from: PATO:0001636 ! unnecessary (continuant) +relationship: is_opposite_of PATO:0001636 ! unnecessary (continuant) + +[Term] +id: PATO:0001636 +name: unnecessary (continuant) +def: "A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001634 ! necessity (continuant) +relationship: is_opposite_of PATO:0001635 ! necessary (continuant) + +[Term] +id: PATO:0001637 +name: necessity of occurrent +def: "A quality of single process inhering in a bearer by virtue of whether the bearer is essential or indispensable." [PATO:GVG] +subset: attribute_slim +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001638 +name: necessary (occurrent) +def: "A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable." [PATO:GVG] +subset: value_slim +is_a: PATO:0001637 ! necessity of occurrent +relationship: is_opposite_of PATO:0001639 ! unnecessary (occurrent) + +[Term] +id: PATO:0001639 +name: unnecessary (occurrent) +def: "A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable." [PATO:GVG] +subset: value_slim +is_a: PATO:0001637 ! necessity of occurrent +relationship: is_opposite_of PATO:0001638 ! necessary (occurrent) + +[Term] +id: PATO:0001643 +name: stubby +def: "A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001645 +name: protruding into +def: "A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary into the surface or boundary of another entity." [PATOC:nc] +subset: relational_slim +subset: value_slim +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0001646 +name: protruding out of +def: "A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary and outwards in relation to the physical space occupied by another entity." [PATOC:nc] +subset: relational_slim +subset: value_slim +synonym: "exits through" RELATED [] +synonym: "exposed" RELATED [] +synonym: "extruding from" EXACT [] +is_a: PATO:0001598 ! protruding + +[Term] +id: PATO:0001648 +name: circumference +def: "An 1-D extent quality which is equal to the length of the closed curve of a circle." [WordNet:WordNet] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001711 ! perimeter + +[Term] +id: PATO:0001649 +name: curved lateral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001650 +name: increased resistance to +def: "A resistance to a stimulus which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high resistance to" EXACT [] +synonym: "increased resistance" EXACT [] +is_a: PATO:0001178 ! resistant to +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001178 ! resistant to +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001651 ! decreased resistance to + +[Term] +id: PATO:0001651 +name: decreased resistance to +def: "A resistance to a stimulus which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "decreased resistance" EXACT [] +synonym: "low resistance to" EXACT [] +is_a: PATO:0001178 ! resistant to +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001178 ! resistant to +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001650 ! increased resistance to + +[Term] +id: PATO:0001652 +name: alignment +def: "A spatial quality inhering in a bearer by virtue of the bearer's spatial positioning with respect to an additional entity." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0000140 ! position +relationship: has_part PATO:0000133 ! orientation + +[Term] +id: PATO:0001653 +name: aligned with +def: "An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity." [PATO:GVG] +subset: relational_slim +subset: value_slim +synonym: "aligned" EXACT [] +synonym: "aligned to" RELATED [] +is_a: PATO:0001652 ! alignment +relationship: is_opposite_of PATO:0001654 ! misaligned with + +[Term] +id: PATO:0001654 +name: misaligned with +def: "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "misaligned" EXACT [] +synonym: "unaligned with" EXACT [] +is_a: PATO:0001652 ! alignment +relationship: is_opposite_of PATO:0001653 ! aligned with + +[Term] +id: PATO:0001655 +name: osmolarity +def: "A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per liter of solution." [Wikipedia:http\://en.wikipedia.org/wiki/Osmolarity] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0000033 ! concentration of + +[Term] +id: PATO:0001656 +name: decreased osmolarity +def: "A osmolarity which is relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "low osmolarity" EXACT [] +is_a: PATO:0001655 ! osmolarity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001655 ! osmolarity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001657 ! increased osmolarity + +[Term] +id: PATO:0001657 +name: increased osmolarity +def: "A osmolarity which is relatively high." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "high osmolarity" EXACT [] +is_a: PATO:0001655 ! osmolarity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001655 ! osmolarity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001656 ! decreased osmolarity + +[Term] +id: PATO:0001658 +name: dorsally rotated +def: "A rotatiotion quality inhering in a bearer by virtue of being rotated towards the back or upper surface of an organism." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001599 ! rotated + +[Term] +id: PATO:0001659 +name: ventrally rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the abdomen of an organism." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001599 ! rotated + +[Term] +id: PATO:0001660 +name: obsolete decreased action potential +def: "An action potential which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low action potential" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0001661 +name: obsolete increased action potential +def: "An action potential which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high action potential" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0001662 +name: fragility +def: "A structural quality inhering in a bearer by virtue of the bearer's disposition to being damaged or destroyed." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001663 +name: increased solubility +def: "A solubility which is relatively high." [PATO:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high solubility" EXACT [] +is_a: PATO:0001537 ! soluble in +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001537 ! soluble in +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001664 ! decreased solubility + +[Term] +id: PATO:0001664 +name: decreased solubility +def: "A solubility which is relatively low." [PATO:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "low solubility" EXACT [] +is_a: PATO:0001537 ! soluble in +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001537 ! soluble in +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001663 ! increased solubility + +[Term] +id: PATO:0001665 +name: superficial +alt_id: PATO:0001471 +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being located near a surface." [Dictionary.com:Dictionary.com] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "superficial to" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001667 +name: attached to +def: "An attachment quality inhering in a bearer by virtue of the bearer's connection or association with another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "affixed to" RELATED [] +synonym: "attached" EXACT [] +is_a: PATO:0001435 ! attachment quality + +[Term] +id: PATO:0001668 +name: associated with +def: "A structural quality inhering in a bearer by virtue of the bearer's being in close proximity and physically interacting with another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "associated" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001669 +name: increased susceptibility toward +def: "A susceptibility toward an external stimulus which is higher than normal/average." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high susceptibility toward" EXACT [] +synonym: "increased susceptibility" EXACT [] +is_a: PATO:0001152 ! susceptible toward +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001152 ! susceptible toward +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001670 ! decreased susceptibility toward + +[Term] +id: PATO:0001670 +name: decreased susceptibility toward +def: "A susceptibility toward an external stimulus which is lower than normal/average." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "decreased susceptibility" EXACT [] +synonym: "low susceptibility toward" EXACT [] +is_a: PATO:0001152 ! susceptible toward +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001152 ! susceptible toward +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001669 ! increased susceptibility toward + +[Term] +id: PATO:0001671 +name: increased distribution +def: "A distribution which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high distribution" EXACT [] +is_a: PATO:0001475 ! increased position +is_a: PATO:0001566 ! distributed +intersection_of: PATO:0001566 ! distributed +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001672 ! decreased distribution + +[Term] +id: PATO:0001672 +name: decreased distribution +def: "A distribution which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low distribution" EXACT [] +is_a: PATO:0001476 ! decreased position +is_a: PATO:0001566 ! distributed +intersection_of: PATO:0001566 ! distributed +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001671 ! increased distribution + +[Term] +id: PATO:0001673 +name: cystic +def: "Structure quality that is the presence of closed epithelium bounded capsules containing one or more liquid or solid organism substances." [PATOC:MAH] +comment: Cystic is an abnormal condition. +subset: value_slim +synonym: "cysts" NARROW [] +is_a: PATO:0002014 ! structure, cavities + +[Term] +id: PATO:0001674 +name: catalytic (activity) concentration +def: "A concentration quality inhering in a bearer by virtue of the bearer's catalytic activity divided by the volume of the system." [IUPAC:IUPAC] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0000033 ! concentration of + +[Term] +id: PATO:0001675 +name: decreased efficiency +def: "An efficiency which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low efficiency" EXACT [] +is_a: PATO:0001678 ! efficient +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001678 ! efficient +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001676 ! increased efficiency + +[Term] +id: PATO:0001676 +name: increased efficiency +def: "An efficiency which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high efficiency" EXACT [] +is_a: PATO:0001678 ! efficient +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001678 ! efficient +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001675 ! decreased efficiency + +[Term] +id: PATO:0001677 +name: inefficient +def: "An efficiency quality inhering in a bearer by virtue of the bearer's lacking efficiency." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001029 ! efficiency +disjoint_from: PATO:0001678 ! efficient +relationship: is_opposite_of PATO:0001678 ! efficient + +[Term] +id: PATO:0001678 +name: efficient +def: "An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001029 ! efficiency +relationship: is_opposite_of PATO:0001677 ! inefficient + +[Term] +id: PATO:0001679 +name: specific volume +def: "A volume quality inhering in a mass of substance by virtue of the amount of 3-dimensional space it occupies." [Wikipedia:http\://en.wikipedia.org/wiki/Specific_volume] +comment: The reciprocal of density. +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000918 ! volume + +[Term] +id: PATO:0001680 +name: molar volume +def: "A volume quality inhering in a homogeneous substance containing 6.02 x 1023 atoms or molecules by virtue of the amount of 3-dimensional space it occupies." [Wikipedia:http\://en.wikipedia.org/wiki/Molar_volume] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000918 ! volume + +[Term] +id: PATO:0001681 +name: molar mass +def: "A physical quality that inheres in a homogeneous substance containing 6.02 x 1023 atoms or molecules." [Wikipedia:http\://en.wikipedia.org/wiki/Molar_mass] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000125 ! mass + +[Term] +id: PATO:0001682 +name: magnetism +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to exert an attractive or repulsive force on other entities." [Wikipedia:http\://en.wikipedia.org/wiki/Magnetism] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001683 +name: increased magnetism +def: "A magnetism which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high magnetism" EXACT [] +is_a: PATO:0001685 ! magnetic +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001685 ! magnetic +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001684 ! decreased magnetism + +[Term] +id: PATO:0001684 +name: decreased magnetism +def: "A magnetism which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low magnetism" EXACT [] +is_a: PATO:0001685 ! magnetic +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001685 ! magnetic +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001683 ! increased magnetism + +[Term] +id: PATO:0001685 +name: magnetic +def: "A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001682 ! magnetism +disjoint_from: PATO:0001686 ! non-magnetic +relationship: is_opposite_of PATO:0001686 ! non-magnetic + +[Term] +id: PATO:0001686 +name: non-magnetic +def: "A magnetic quality inhering in a bearer by virtue of the bearer's inability to exert magnitism." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001682 ! magnetism +relationship: is_opposite_of PATO:0001685 ! magnetic + +[Term] +id: PATO:0001687 +name: elevation +def: "A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface." [Trailillustrated:Trailillustrated] +subset: attribute_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001688 +name: increased elevation +def: "An elevation which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "elevated" RELATED [] +synonym: "high elevation" EXACT [] +is_a: PATO:0001475 ! increased position +is_a: PATO:0001687 ! elevation +intersection_of: PATO:0001687 ! elevation +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001689 ! decreased elevation + +[Term] +id: PATO:0001689 +name: decreased elevation +def: "An elevation which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low elevation" EXACT [] +is_a: PATO:0001476 ! decreased position +is_a: PATO:0001687 ! elevation +intersection_of: PATO:0001687 ! elevation +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001688 ! increased elevation + +[Term] +id: PATO:0001690 +name: contractile +def: "A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted." [PATOC:GVG] +comment: This refers to the disposition of the bearer. +subset: disposition_slim +subset: value_slim +is_a: PATO:0001579 ! contractility +disjoint_from: PATO:0001691 ! non-contractile +relationship: is_opposite_of PATO:0001691 ! non-contractile + +[Term] +id: PATO:0001691 +name: non-contractile +def: "A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted." [PATOC:GVG] +comment: This refers to the disposition of the bearer. +subset: disposition_slim +subset: value_slim +is_a: PATO:0001579 ! contractility +relationship: is_opposite_of PATO:0001690 ! contractile + +[Term] +id: PATO:0001693 +name: increased viscosity +def: "A viscosity which relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high viscosity" EXACT [] +is_a: PATO:0000998 ! viscous +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000998 ! viscous +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001694 ! decreased viscosity + +[Term] +id: PATO:0001694 +name: decreased viscosity +def: "A viscosity which relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low viscosity" EXACT [] +is_a: PATO:0000998 ! viscous +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000998 ! viscous +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001693 ! increased viscosity + +[Term] +id: PATO:0001695 +name: increased fecundity +def: "A fecundity which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high fecundity" EXACT [] +is_a: PATO:0000273 ! fecundity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000273 ! fecundity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001696 ! decreased fecundity + +[Term] +id: PATO:0001696 +name: decreased fecundity +def: "A fecundity which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low fecundity" EXACT [] +is_a: PATO:0000273 ! fecundity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000273 ! fecundity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001695 ! increased fecundity + +[Term] +id: PATO:0001697 +name: decreased photosensitivity +def: "A photosensitivity which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "low photosensitivity" EXACT [] +is_a: PATO:0000547 ! photosensitive +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000547 ! photosensitive +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001698 ! increased photosensitivity + +[Term] +id: PATO:0001698 +name: increased photosensitivity +def: "A photosensitivity which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +synonym: "high photosensitivity" EXACT [] +is_a: PATO:0000547 ! photosensitive +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000547 ! photosensitive +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001697 ! decreased photosensitivity + +[Term] +id: PATO:0001699 +name: regular sleep pattern +def: "A sleep pattern which has regular start and/or end times." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000062 ! sleep pattern +relationship: is_opposite_of PATO:0001700 ! irregular sleep pattern + +[Term] +id: PATO:0001700 +name: irregular sleep pattern +def: "A sleep pattern which has irregular start and/or end times." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000062 ! sleep pattern +relationship: is_opposite_of PATO:0001699 ! regular sleep pattern + +[Term] +id: PATO:0001701 +name: mature +def: "A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] +subset: value_slim +is_a: PATO:0000261 ! maturity +relationship: is_opposite_of PATO:0001501 ! immature + +[Term] +id: PATO:0001702 +name: saturated violet +def: "A color consisting of violet hue and high saturation." [PATOC:GVG] +subset: value_slim +synonym: "bright violet" RELATED [] +is_a: PATO:0001424 ! violet + +[Term] +id: PATO:0001703 +name: desaturated violet +def: "A color consisting of violet hue and low saturation." [PATOC:GVG] +subset: value_slim +synonym: "pale violet" EXACT [] +is_a: PATO:0001424 ! violet + +[Term] +id: PATO:0001704 +name: light violet +def: "A color consisting of violet hue and high brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001424 ! violet + +[Term] +id: PATO:0001705 +name: dark violet +def: "A color consisting of violet hue and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001424 ! violet + +[Term] +id: PATO:0001706 +name: behavioural inactive +def: "A behavioral quality inhering in a bearer by virtue of the bearer's disposition to lack activity." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002265 ! behavioural activity +disjoint_from: PATO:0001707 ! behavioural active +relationship: is_opposite_of PATO:0001707 ! behavioural active + +[Term] +id: PATO:0001707 +name: behavioural active +def: "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002265 ! behavioural activity +relationship: is_opposite_of PATO:0001706 ! behavioural inactive + +[Term] +id: PATO:0001708 +name: 1-D extent +def: "A size quality inhering in an bearer by virtue of the bearer's extension in one dimension." [PATOC:GVG] +subset: attribute_slim +synonym: "1-D size" EXACT [] +is_a: PATO:0000117 ! size + +[Term] +id: PATO:0001709 +name: 2-D extent +def: "A size quality inhering in an bearer by virtue of the bearer's extension in two dimensions." [PATOC:GVG] +subset: attribute_slim +synonym: "2-D size" EXACT [] +is_a: PATO:0000117 ! size + +[Term] +id: PATO:0001710 +name: 3-D extent +def: "A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions." [PATOC:GVG] +subset: attribute_slim +synonym: "3D size" EXACT [] +is_a: PATO:0000117 ! size + +[Term] +id: PATO:0001711 +name: perimeter +def: "An 1-D extent quality inhering in two-dimensional bearer by virtue of being equal to the distance around it." [Wikipedia:http\://en.wikipedia.org/wiki/Perimeter] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001708 ! 1-D extent + +[Term] +id: PATO:0001712 +name: increased perimeter +def: "A perimeter which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000573 ! increased length +is_a: PATO:0001711 ! perimeter +intersection_of: PATO:0001711 ! perimeter +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001713 ! decreased perimeter + +[Term] +id: PATO:0001713 +name: decreased perimeter +def: "A perimeter which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000574 ! decreased length +is_a: PATO:0001711 ! perimeter +intersection_of: PATO:0001711 ! perimeter +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001712 ! increased perimeter + +[Term] +id: PATO:0001714 +name: increased diameter +def: "A diameter which is relatively large." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000573 ! increased length +is_a: PATO:0001334 ! diameter +intersection_of: PATO:0001334 ! diameter +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001715 ! decreased diameter + +[Term] +id: PATO:0001715 +name: decreased diameter +def: "A diameter which is relatively small." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000574 ! decreased length +is_a: PATO:0001334 ! diameter +intersection_of: PATO:0001334 ! diameter +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001714 ! increased diameter + +[Term] +id: PATO:0001716 +name: non-fragile +def: "A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking." [thefreedictionary.com:thefreedictionary.com] +subset: attribute_slim +subset: disposition_slim +synonym: "resilient" RELATED [] +synonym: "strong" RELATED [] +synonym: "tough" RELATED [] +is_a: PATO:0001662 ! fragility +relationship: is_opposite_of PATO:0001362 ! fragile + +[Term] +id: PATO:0001717 +name: radiation emitting intensity quality +def: "A radiation emitting quality which obtains by the intensity of the bearer emitted radiation." [PATOC:GVG] +is_a: PATO:0001299 ! radiation emitting quality + +[Term] +id: PATO:0001718 +name: luminance +def: "A quality that exists by virtue of the luminous intensity per unit area projected in a given direction." [Wikipedia:http\://en.wikipedia.org/wiki/Luminance] +is_a: PATO:0001296 ! luminous flux + +[Term] +id: PATO:0001719 +name: receptivity +def: "A behavioral quality which holds by virtue of whether the bearer exhibits the ability to receive another agentitive entity." [PATOC:cjm] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0000186 ! behavioral quality + +[Term] +id: PATO:0001720 +name: female receptivity +def: "A behavioral quality which holds by virtue of extent of the receptiveness of a female to male advances." [GO:GO] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0001719 ! receptivity + +[Term] +id: PATO:0001721 +name: male receptivity +def: "A behavioral quality which holds by virtue of extent of the receptiveness of a male to female advances." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0001719 ! receptivity + +[Term] +id: PATO:0001723 +name: increased female receptivity +def: "A female receptivity which is relatively high." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "high female receptivity" EXACT [] +is_a: PATO:0001720 ! female receptivity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001720 ! female receptivity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001724 ! decreased female receptivity + +[Term] +id: PATO:0001724 +name: decreased female receptivity +def: "A female receptivity which is relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "low female receptivity" EXACT [] +is_a: PATO:0001720 ! female receptivity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001720 ! female receptivity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001723 ! increased female receptivity + +[Term] +id: PATO:0001725 +name: increased male receptivity +def: "A male receptivity which is relatively high." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "high male receptivity" EXACT [] +is_a: PATO:0001721 ! male receptivity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001721 ! male receptivity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001726 ! decreased male receptivity + +[Term] +id: PATO:0001726 +name: decreased male receptivity +def: "A male receptivity which is relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "low male receptivity" EXACT [] +is_a: PATO:0001721 ! male receptivity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001721 ! male receptivity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001725 ! increased male receptivity + +[Term] +id: PATO:0001727 +name: disposition +def: "A quality inhering in a bearer by virtue of the bearer's prevailing tendency, mood, or inclination." [Merriam-Webster:Merriam-Webster] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "tendency" RELATED [] +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001728 +name: multi-cellular organismal disposition +def: "A disposition inhering in a multi-cellular organism." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001727 ! disposition + +[Term] +id: PATO:0001729 +name: shedability +def: "An organismal quality inhering in a bearer by virtue of the bearer's disposition to lose an entitity by natural process." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0001730 +name: deciduous (generic) +def: "A quality inhering in a bearer by virtue of the bearer's disposition to shed body parts." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001729 ! shedability + +[Term] +id: PATO:0001731 +name: deciduous (plant) +def: "A quality inhering in a plant by virtue of the bearer's disposition to shed foliage." [PATOC:cjm] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001729 ! shedability + +[Term] +id: PATO:0001732 +name: non-deciduous (any body part) +def: "A quality inhering in a plant by virtue of the bearer's disposition to not shed any body part." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001729 ! shedability + +[Term] +id: PATO:0001733 +name: evergreen (plant) +def: "A quality inhering in a plant by virtue of the bearer's disposition to retain foliage." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001729 ! shedability + +[Term] +id: PATO:0001734 +name: semi-deciduous(plant) +def: "A quality inhering in a plant by virtue of the bearer's disposition to being between evergeen and deciduous." [PATOC:cjm] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001729 ! shedability + +[Term] +id: PATO:0001735 +name: liquid configuration +def: "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of liquids." [PATOC:GVG] +synonym: "liquid" EXACT [] +is_a: PATO:0001548 ! quality of a liquid + +[Term] +id: PATO:0001736 +name: solid configuration +def: "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of solids." [PATOC:GVG] +subset: value_slim +synonym: "solid" EXACT [] +is_a: PATO:0001546 ! quality of a solid + +[Term] +id: PATO:0001737 +name: gaseus configuration +def: "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of gases." [PATOC:GVG] +synonym: "gas" EXACT [] +is_a: PATO:0001547 ! quality of a gas + +[Term] +id: PATO:0001738 +name: dissociated from +def: "A structural quality inhering in a bearer by virtue of the bearer's lacking physically interaction with another entity." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "dissociated" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001739 +name: radiation quality +def: "A quality that inheres in an bearer by virtue of how that bearer interacts with radiation." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001740 +name: activity (of a radionuclide) +def: "A radiation quality inhering in a radioactive substance by virtue of its transformation (disintegration) rate." [PATOC:GVG] +subset: attribute_slim +synonym: "radioactivity" EXACT [] +is_a: PATO:0001739 ! radiation quality + +[Term] +id: PATO:0001741 +name: radioactive +def: "A radiation quality inhering in bearer by virtue of the bearer's exhibiting or being caused by radioactivity." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001740 ! activity (of a radionuclide) + +[Term] +id: PATO:0001742 +name: increased radioactivity +def: "A radioactivity which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "high radioactivity" EXACT [] +is_a: PATO:0001741 ! radioactive +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001741 ! radioactive +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001743 ! decreased radioactivity + +[Term] +id: PATO:0001743 +name: decreased radioactivity +def: "A radioactivity which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "low radioactivity" EXACT [] +is_a: PATO:0001741 ! radioactive +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001741 ! radioactive +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001742 ! increased radioactivity + +[Term] +id: PATO:0001744 +name: radiation exposure +def: "A radiation quality inhering in a bearer by virtue of what the bearer receives as a result of being exposed to ionizing radiation." [hps:hps] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001739 ! radiation quality + +[Term] +id: PATO:0001745 +name: radiation absorbed dose +def: "A radiation exposure quality inhering in a substance by virtue of the radiation energy \"deposited\" in a kilogram of a substance." [arpansa:arpansa] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001744 ! radiation exposure + +[Term] +id: PATO:0001746 +name: radiation equivalent dose +def: "A radiation exposure quality inhering in a tissue by virtue of the relation between the absorbed dose to the effective biological damage of the radiation to that tissue." [arpansa:arpansa] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001744 ! radiation exposure + +[Term] +id: PATO:0001747 +name: radiation effective dose +def: "A radiation exposure quality inhering in an organ by virtue of the multiplication of an equivalent dose to that organ multiplied by the tissue weighting factor for that organ." [arpansa:arpansa] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001744 ! radiation exposure + +[Term] +id: PATO:0001748 +name: invaginated +def: "A shape quality in which a portion of the outermost boundary of an entity folds in space such that a portion that was originally convex is now concave." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001857 ! concave + +[Term] +id: PATO:0001749 +name: paedomorphic growth +def: "A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth." [PATOC:mh] +subset: value_slim +synonym: "hypoplastic growth" EXACT [] +synonym: "pedomorphic growth" EXACT [] +is_a: PATO:0001490 ! heterochronic growth +relationship: is_opposite_of PATO:0001752 ! peramorphic growth + +[Term] +id: PATO:0001750 +name: postdisplaced growth +def: "A paedomorphic growth quality which is due to a delayed onset." [PATOC:mh] +subset: value_slim +is_a: PATO:0001749 ! paedomorphic growth + +[Term] +id: PATO:0001751 +name: progenetic growth +def: "A paedomorphic growth quality which is due to an ealier offset." [PATOC:mh] +subset: value_slim +is_a: PATO:0001749 ! paedomorphic growth + +[Term] +id: PATO:0001752 +name: peramorphic growth +def: "A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth." [PATOC:mh] +subset: attribute_slim +synonym: "hyperplastic growth" EXACT [] +is_a: PATO:0001490 ! heterochronic growth +relationship: is_opposite_of PATO:0001749 ! paedomorphic growth + +[Term] +id: PATO:0001753 +name: accelerated growth +def: "A peramorphic growth quality which is due to an increased rate." [PATOC:mh] +subset: value_slim +is_a: PATO:0001752 ! peramorphic growth + +[Term] +id: PATO:0001754 +name: predisplaced growth +def: "A peramorphic growth quality which is due to an earlier onset." [PATOC:mh] +subset: value_slim +synonym: "precocious growth" EXACT [] +is_a: PATO:0001752 ! peramorphic growth + +[Term] +id: PATO:0001755 +name: hypermorphic growth +def: "A peramorphic growth quality which is due to a delayed offset." [PATOC:mh] +subset: value_slim +is_a: PATO:0001752 ! peramorphic growth + +[Term] +id: PATO:0001756 +name: heat conductivity +def: "A conductivity quality inhering in a bearer by virtue of the bearer's disposition to spontaneous transfer of thermal energy from a region of higher temperature to a region of lower temperature." [Wikipedia:http\://en.wikipedia.org/wiki/Heat_conduction] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +synonym: "thermal conduction" EXACT [] +is_a: PATO:0001585 ! conductivity + +[Term] +id: PATO:0001757 +name: electrical conductivity +def: "A conductivity quality inhering in a bearer by virtue of the bearer's ability to convey electricity." [Wikipedia:http\://en.wikipedia.org/wiki/Electrical_conduction] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001585 ! conductivity + +[Term] +id: PATO:0001758 +name: nerve conductivity +def: "A conductivity quality inhering in motor and sensory nerves by virtue of the bearer's ability to convey electricity." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001757 ! electrical conductivity + +[Term] +id: PATO:0001759 +name: granular +def: "A composition quality inhering in a bearer by virtue of the bearer's containing granules." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001760 +name: female semi-fertile +subset: disposition_slim +subset: value_slim +is_a: PATO:0001767 ! semi-fertile +relationship: is_opposite_of PATO:0001763 ! female semi-sterile + +[Term] +id: PATO:0001761 +name: male semi-fertile +subset: disposition_slim +subset: value_slim +is_a: PATO:0001767 ! semi-fertile +relationship: is_opposite_of PATO:0001762 ! male semi-sterile + +[Term] +id: PATO:0001762 +name: male semi-sterile +subset: disposition_slim +subset: value_slim +is_a: PATO:0000279 ! male fertility +relationship: is_opposite_of PATO:0001761 ! male semi-fertile + +[Term] +id: PATO:0001763 +name: female semi-sterile +subset: disposition_slim +subset: value_slim +is_a: PATO:0000277 ! female fertility +relationship: is_opposite_of PATO:0001760 ! female semi-fertile + +[Term] +id: PATO:0001764 +name: increased age +def: "An age which is high relative to the normal or average." [PATOC:GVG] +subset: value_slim +synonym: "high age" EXACT [] +is_a: PATO:0000011 ! age +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000011 ! age +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001765 ! decreased age + +[Term] +id: PATO:0001765 +name: decreased age +def: "An age which is low relative to the normal or average." [PATOC:GVG] +subset: value_slim +synonym: "low age" EXACT [] +is_a: PATO:0000011 ! age +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000011 ! age +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001764 ! increased age + +[Term] +id: PATO:0001766 +name: obsolete cellular polarity +def: "A cellular quality inhering in a cell by virtue of its anisotropic intracellular organization." [PATOC:GVG] +subset: attribute_slim +subset: cell_quality +is_obsolete: true +consider: PATO:0001769 + +[Term] +id: PATO:0001767 +name: semi-fertile +subset: disposition_slim +subset: value_slim +is_a: PATO:0000274 ! fertility + +[Term] +id: PATO:0001768 +name: semi-lethal (sensu genetics) +def: "A viability quality inhering in a bearer or a population by virtue of some of it's members' inability to survive to reproduce." [PATOC:CVC] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001769 +name: positional polarity +def: "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an axis." [PATOC:MAH] +subset: attribute_slim +synonym: "cellular polarity" RELATED [PATOC:MAH] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001770 +name: semi-viable +def: "A viability quality inhering in a population by virtue of some of it's members' ability to survive." [PATOC:CVC] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001772 +name: surrounding +def: "A spatial quality inhering in a bearer by virtue of the bearer's being extended on all sides of another entity simultaneously." [thefreedictionary.com:thefreedictionary.com] +comment: Nedd to add reciprocal of relationship to 'surrounded by' PATO:0005016. +subset: relational_slim +subset: value_slim +synonym: "encircling" EXACT [] +synonym: "enclosing" EXACT [] +synonym: "wrapping" EXACT [] +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001773 +name: monophasic +def: "A quality inhering in a bearer by virtue of the bearer's having only one phase or stage." [hefreedictionary.com:hefreedictionary.com] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0001774 +name: polyphasic +def: "A quality inhering in a bearer by virtue of the bearer's having or existing in many phases." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000083 ! phase + +[Term] +id: PATO:0001775 +name: dorsal-ventral polarity +def: "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the dorsal-ventral axis." [PATOC:MAH] +subset: value_slim +is_a: PATO:0001769 ! positional polarity + +[Term] +id: PATO:0001776 +name: increased flexibility +def: "A flexibility which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high flexibility" EXACT [] +is_a: PATO:0001544 ! flexible +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001544 ! flexible +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001777 ! decreased flexibility + +[Term] +id: PATO:0001777 +name: decreased flexibility +def: "A flexibility which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low flexibility" EXACT [] +is_a: PATO:0001544 ! flexible +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001544 ! flexible +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001776 ! increased flexibility + +[Term] +id: PATO:0001778 +name: increased strength +def: "A strength which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high strength" EXACT [] +is_a: PATO:0001230 ! strength +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001230 ! strength +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001779 ! decreased strength + +[Term] +id: PATO:0001779 +name: decreased strength +def: "A strength which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "weak" EXACT [] +is_a: PATO:0001230 ! strength +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001230 ! strength +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001778 ! increased strength + +[Term] +id: PATO:0001780 +name: dystrophic +def: "A size quality inhering in a bearer by virtue of the bearer's being abnormally developed, usually due to malnutrition." [Wiikipedia:Wiikipedia] +subset: mpath_slim +subset: value_slim +synonym: "dystrophied" EXACT [] +synonym: "dystrophy" RELATED [] +is_a: PATO:0000587 ! decreased size + +[Term] +id: PATO:0001781 +name: irregular thickness +def: "A thickness quality which lacks pattern." [PATOC:GVG] +is_a: PATO:0000915 ! thickness + +[Term] +id: PATO:0001782 +name: increased intensity +def: "An intensity which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high intensity" EXACT [] +is_a: PATO:0000049 ! intensity +is_a: PATO:0002300 ! increased quality +intersection_of: PATO:0000049 ! intensity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001783 ! decreased intensity + +[Term] +id: PATO:0001783 +name: decreased intensity +def: "An intensity which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low intensity" EXACT [] +is_a: PATO:0000049 ! intensity +is_a: PATO:0002301 ! decreased quality +intersection_of: PATO:0000049 ! intensity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001782 ! increased intensity + +[Term] +id: PATO:0001784 +name: bifurcated +alt_id: PATO:0001572 +def: "A branched quality inhering in a bearer by virtue of the bearer's being divided into two branches." [thefreedictionary.com:thefreedictionary.com] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "bifid" EXACT [] +synonym: "forked" RELATED [] +is_a: PATO:0000402 ! branched +is_a: PATO:0001786 ! split + +[Term] +id: PATO:0001785 +name: splayed +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outward." [PATOC:GVG] +comment: TODO: obsolete, definition too ambiguous. +subset: cell_quality +subset: value_slim +synonym: "flared" EXACT [] +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001786 +name: split +def: "A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions." [die.net:die.net] +subset: mpath_slim +subset: value_slim +synonym: "clefted" EXACT [] +synonym: "divided" RELATED [] +synonym: "forked" RELATED [] +synonym: "septate" NARROW [] +synonym: "subdivided" RELATED [] +is_a: PATO:0000052 ! shape +disjoint_from: PATO:0002034 ! undivided + +[Term] +id: PATO:0001787 +name: rotational curvature +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001591 ! curvature + +[Term] +id: PATO:0001788 +name: increased mass density +def: "A density which is higher relative to the normal or average." [PATOC:GVG] +subset: value_slim +synonym: "high density" EXACT [] +is_a: PATO:0001164 ! dense +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001164 ! dense +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001790 ! decreased mass density + +[Term] +id: PATO:0001789 +name: domed +def: "A curvature quality inhering in a bearer by virtue of the bearer's having a shape resembling a dome." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001790 +name: decreased mass density +def: "A density which is lower relative to the normal or average." [PATOC:GVG] +subset: value_slim +synonym: "low density" EXACT [] +is_a: PATO:0001164 ! dense +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001164 ! dense +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001788 ! increased mass density + +[Term] +id: PATO:0001791 +name: multi-localised +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being confined or restricted to multiple locations." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "multi-focal" EXACT [] +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0001792 +name: left side of +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located on left side of from the a another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001793 +name: right side of +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located on right side of a another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001794 +name: coiling +def: "A shape quality inhering in a bearer by virtue of the bearer's being wound in a continuous series of loops." [Online_Dictionary:Online_Dictionary] +subset: attribute_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001795 +name: increased coiling +def: "A coiling which is relatively high." [PATOC:GVG] +subset: cell_quality +subset: value_slim +synonym: "high coiling" EXACT [] +is_a: PATO:0000404 ! coiled +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000404 ! coiled +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001796 ! decreased coiling + +[Term] +id: PATO:0001796 +name: decreased coiling +def: "A coiling which is relatively low." [PATOC:GVG] +subset: cell_quality +subset: value_slim +synonym: "low coiling" EXACT [] +is_a: PATO:0000404 ! coiled +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000404 ! coiled +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001795 ! increased coiling + +[Term] +id: PATO:0001798 +name: kinked +def: "A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length." [thefreedictionary.com:thefreedictionary.com] +subset: cell_quality +subset: value_slim +synonym: "tightly curled" RELATED [] +synonym: "twisted" RELATED [] +is_a: PATO:0000617 ! bent + +[Term] +id: PATO:0001799 +name: ruffled +def: "A shape quality inhering in a bearer by virtue of the bearer's exhibiting disturbance of its smoothness or regularity." [.thefreedictionary.com:.thefreedictionary.com] +subset: cell_quality +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001800 +name: water composition +def: "A composition quality inhering in an bearer by virtue of the quantities or relative ratios of water of the inhering entity." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000025 ! composition + +[Term] +id: PATO:0001801 +name: decreased water composition +def: "A composition quality inhering in an bearer by virtue of the reduction in amount of water the bearer contains." [Wikipedia:http\://en.wikipedia.org/wiki/Dehydrated] +subset: value_slim +synonym: "dehydrated" EXACT [] +synonym: "dry" RELATED [] +is_a: PATO:0001800 ! water composition +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001800 ! water composition +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal + +[Term] +id: PATO:0001802 +name: loose +def: "A pattern quality inhering in a bearer by virtue of the bearer's not being compact or dense in arrangement." [answers.com:answers.com] +subset: value_slim +is_a: PATO:0000330 ! irregular spatial pattern + +[Term] +id: PATO:0001803 +name: phototoxic +def: "A photosensitivity quality inhering in a bearer by virtue of the bearer's disposition to being susceptible to damage by light." [answers.com:answers.com] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000927 ! photosensitivity + +[Term] +id: PATO:0001804 +name: scaly +def: "A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with scales." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "squamous" RELATED [] +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0001805 +name: flaky +def: "A texture quality inhering in a bearer by virtue of the bearer's formed or tending to form flakes or thin, crisp fragments." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0001806 +name: sensitivity to irradiation +def: "A sensitivity quality inhering in a bearer by virtue of the bearer's exposure to radiation." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000085 ! sensitivity toward + +[Term] +id: PATO:0001807 +name: decreased sensitivity to irradiation +def: "A sensitivity to irradiation which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low sensitivity to irradiation" EXACT [] +is_a: PATO:0001806 ! sensitivity to irradiation +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001806 ! sensitivity to irradiation +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001808 ! increased sensitivity to irradiation + +[Term] +id: PATO:0001808 +name: increased sensitivity to irradiation +def: "A sensitivity to irradiation which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high sensitivity to irradiation" EXACT [] +is_a: PATO:0001806 ! sensitivity to irradiation +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001806 ! sensitivity to irradiation +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001807 ! decreased sensitivity to irradiation + +[Term] +id: PATO:0001809 +name: tight +def: "A pattern quality inhering in a bearer by virtue of the bearer's being compact or dense in arrangement." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000440 ! regular spatial pattern + +[Term] +id: PATO:0001810 +name: wrinkled +def: "A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by one or more creases in a normally smooth surface." [url:http\://www.thefreedictionary.com/wrinkled] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002255 ! grooved + +[Term] +id: PATO:0001811 +name: obsolete increased relaxation +def: "A relaxation which is relatively high." [PATOC:GVG] +comment: GO has now relevant relation terms which should be used instead. +subset: value_slim +synonym: "high relaxation" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0001812 +name: obsolete decreased relaxation +def: "A relaxation which is relatively low." [PATOC:GVG] +comment: GO has now relevant relation terms which should be used instead. +subset: value_slim +synonym: "low relaxation" EXACT [] +is_obsolete: true + +[Term] +id: PATO:0001813 +name: atonicity +def: "A structural quality inhering in a bearer by virtue of the bearer's lack elastic tension that facilitate response to stimuli." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001439 ! tonicity + +[Term] +id: PATO:0001814 +name: dystonicity +def: "A structural quality inhering in a bearer by virtue of the bearer's impaired elastic tension that facilitate response to stimuli." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001439 ! tonicity + +[Term] +id: PATO:0001815 +name: fatigability +def: "A strength quality inhering in a bearer by virtue of the bearer's disposition to lose strength." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001230 ! strength + +[Term] +id: PATO:0001816 +name: increased fatigability +def: "A fatigability which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high fatigability" EXACT [] +is_a: PATO:0001779 ! decreased strength +is_a: PATO:0001815 ! fatigability +relationship: is_opposite_of PATO:0001817 ! decreased fatigability + +[Term] +id: PATO:0001817 +name: decreased fatigability +def: "A fatigability which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low fatigability" EXACT [] +is_a: PATO:0001778 ! increased strength +is_a: PATO:0001815 ! fatigability +relationship: is_opposite_of PATO:0001816 ! increased fatigability + +[Term] +id: PATO:0001818 +name: progressive +def: "A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time." [PATOC:GVG] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0002026 ! non-progressive + +[Term] +id: PATO:0001819 +name: atretic +def: "A morphological quality inhering in a bearer by virtue of the bearer's absence or closure of a normal body orifice or tubular passage." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "atresia" EXACT [] +is_a: PATO:0000608 ! closed + +[Term] +id: PATO:0001821 +name: imperforate +def: "A structural quality inhering in a bearer by virtue of the bearer's having no opening." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +synonym: "unperforated" EXACT [] +is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0002112 ! perforate + +[Term] +id: PATO:0001822 +name: wetness +def: "A quality inhering in a bearer by virtue of whether the bearer's being covered by a liquid." [wordreference.com:wordreference.com] +subset: attribute_slim +subset: mpath_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001823 +name: wet +def: "A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001822 ! wetness +disjoint_from: PATO:0001824 ! dry +relationship: is_opposite_of PATO:0001824 ! dry + +[Term] +id: PATO:0001824 +name: dry +def: "A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001822 ! wetness +relationship: is_opposite_of PATO:0001823 ! wet + +[Term] +id: PATO:0001825 +name: increased wetness +def: "A wetness quality that is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001823 ! wet +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001823 ! wet +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001826 ! decreased wetness + +[Term] +id: PATO:0001826 +name: decreased wetness +def: "A wetness quality that is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low wetness" EXACT [] +is_a: PATO:0001823 ! wet +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001823 ! wet +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001825 ! increased wetness + +[Term] +id: PATO:0001827 +name: pseudohermaphrodite +def: "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of one sex and external sexual characteristics of the other sex." [WordNet:WordNet] +subset: value_slim +is_a: PATO:0001894 ! phenotypic sex + +[Term] +id: PATO:0001828 +name: male pseudohermaphrodite +def: "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of male and external sexual characteristics of female." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001827 ! pseudohermaphrodite + +[Term] +id: PATO:0001829 +name: female pseudohermaphrodite +def: "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of female and external sexual characteristics of male." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001827 ! pseudohermaphrodite + +[Term] +id: PATO:0001830 +name: decreased female fertility +def: "A female fertility which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low female fertility" EXACT [] +is_a: PATO:0000888 ! female fertile +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000888 ! female fertile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001831 ! increased female fertility + +[Term] +id: PATO:0001831 +name: increased female fertility +def: "A female fertility which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high female fertility" EXACT [] +is_a: PATO:0000888 ! female fertile +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000888 ! female fertile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001830 ! decreased female fertility + +[Term] +id: PATO:0001832 +name: increased male fertility +def: "A male fertility which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high male fertility" EXACT [] +is_a: PATO:0000891 ! male fertile +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000891 ! male fertile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001833 ! decreased male fertility + +[Term] +id: PATO:0001833 +name: decreased male fertility +def: "A male fertility which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low male fertility" EXACT [] +is_a: PATO:0000891 ! male fertile +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000891 ! male fertile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001832 ! increased male fertility + +[Term] +id: PATO:0001834 +name: decreased fertility +def: "A fertility which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low fertility" EXACT [] +is_a: PATO:0000955 ! fertile +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000955 ! fertile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001835 ! increased fertility + +[Term] +id: PATO:0001835 +name: increased fertility +def: "A fertility which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high fertility" EXACT [] +is_a: PATO:0000955 ! fertile +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000955 ! fertile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001834 ! decreased fertility + +[Term] +id: PATO:0001836 +name: congested +def: "A structural quality inhering in a bearer with some kind of aperture or opening that is blocked or clogged." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001838 +name: decreased fluid flow +def: "A flow that is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low flow" EXACT [] +is_a: PATO:0002243 ! fluid flow rate +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002243 ! fluid flow rate +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001839 ! increased fluid flow + +[Term] +id: PATO:0001839 +name: increased fluid flow +def: "A fluid flow that is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high flow" EXACT [] +is_a: PATO:0002243 ! fluid flow rate +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002243 ! fluid flow rate +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001838 ! decreased fluid flow + +[Term] +id: PATO:0001841 +name: remittent intensity +def: "An intensity which is characterized by temporary abatement in severity." [answers.com:answers.com] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000049 ! intensity + +[Term] +id: PATO:0001842 +name: acidity +def: "A concentration quality inhering in a bearer by virtue of the bearer's containing acid (hydrogen ions)." [biology-online:biology-online] +subset: attribute_slim +subset: scalar_slim +synonym: "pH" EXACT [] +is_a: PATO:0000033 ! concentration of + +[Term] +id: PATO:0001843 +name: decreased acidity +def: "An acidity which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low acidity" EXACT [] +is_a: PATO:0001842 ! acidity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001842 ! acidity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001844 ! increased acidity + +[Term] +id: PATO:0001844 +name: increased acidity +def: "An acidity which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high acidity" EXACT [] +is_a: PATO:0001842 ! acidity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001842 ! acidity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001843 ! decreased acidity + +[Term] +id: PATO:0001845 +name: irregular rhythm +def: "A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm lacking pattern." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000078 ! rhythm quality + +[Term] +id: PATO:0001846 +name: tangled +def: "A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001847 +name: constricted +alt_id: PATO:0001837 +def: "A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically." [WordNet:WordNet] +subset: value_slim +synonym: "stenosis" EXACT [] +synonym: "stenotic" EXACT [] +synonym: "stricture" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001848 +name: asymmetrically curved +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved asymmetrically." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0000406 ! curved + +[Term] +id: PATO:0001849 +name: abrased +def: "A texture quality inhering in a bearer by virtue of a portion of the bearer's surface being scraped away." [answers.com:answers.com] +subset: value_slim +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0001850 +name: scarred +def: "A structural quality inhering in a bearer by virtue of the bearer's being fibrous tissue that replaces normal tissue destroyed by injury or disease." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001851 +name: swollen +def: "A structure quality inhering in a bearer by virtue of the bearer's exhibiting transient abnormal enlargement, not due to cell proliferation." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +synonym: "swelling" NARROW [] +is_a: PATO:0000141 ! structure +relationship: has_part PATO:0000586 ! increased size +relationship: has_part PATO:0001598 ! protruding + +[Term] +id: PATO:0001852 +name: dislocated +alt_id: PATO:0001479 +alt_id: PATO:0002158 +alt_id: PATO:0002159 +def: "A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position." [thefreedictionary.com:thefreedictionary.com] +subset: mpath_slim +subset: value_slim +synonym: "dislocation" EXACT [] +synonym: "luxated" EXACT [] +synonym: "luxation" EXACT [] +synonym: "relational dislocated quality" EXACT [] +is_a: PATO:0002181 ! displaced + +[Term] +id: PATO:0001853 +name: hydrocephalic +def: "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of cerebral spinal fluid." [PATOC:mh] +subset: value_slim +is_a: PATO:0001450 ! edematous + +[Term] +id: PATO:0001854 +name: vertical +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being situated at right angles to the horizon." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0001855 +name: horizontal +def: "A positional quality inhering in a bearer by virtue of the bearer's being in the plane of the horizon." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001856 +name: introverted +def: "An oriented quality inhering in a bearer by virtue of the bearer's being turned inward upon itself." [die.net:die.net] +comment: For example, a tubular organ or part. +subset: value_slim +is_a: PATO:0000614 ! oriented + +[Term] +id: PATO:0001857 +name: concave +def: "A shape quality in a bearer by virtue of the bearer's curving inward." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +is_a: PATO:0002005 ! concavity +relationship: is_opposite_of PATO:0001355 ! convex + +[Term] +id: PATO:0001858 +name: partially paralysed +def: "A functionality quality inhering in a bearer by virtue of being not completely paralysed." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002076 ! movement behavioral quality + +[Term] +id: PATO:0001859 +name: increased coordination +def: "A coordination which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "high coordination" EXACT [] +is_a: PATO:0000769 ! coordinated +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000769 ! coordinated +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001860 ! decreased coordination + +[Term] +id: PATO:0001860 +name: decreased coordination +def: "A coordination which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "low coordination" EXACT [] +is_a: PATO:0000769 ! coordinated +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000769 ! coordinated +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001859 ! increased coordination + +[Term] +id: PATO:0001861 +name: fasciculated +def: "A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "fascicled" EXACT [] +is_a: PATO:0002013 ! fasciculation +disjoint_from: PATO:0001959 ! defasciculated +relationship: is_opposite_of PATO:0001959 ! defasciculated + +[Term] +id: PATO:0001862 +name: lack of fertility in offspring +def: "A fertility quality inhering in a bearer by virtue of the bearer's disposition to make its offspring sterile." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +synonym: "grandchildless" RELATED [] +is_a: PATO:0000274 ! fertility + +[Term] +id: PATO:0001863 +name: chronic +def: "A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration." [PATOC:cjm] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001309 ! duration +relationship: is_opposite_of PATO:0000389 ! acute + +[Term] +id: PATO:0001865 +name: spheroid +alt_id: PATO:0001864 +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. Includes spheres and oblate/prolate spheroids." [Wikipedia:http\://en.wikipedia.org/wiki/Spheroid] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "sphericality" RELATED [] +is_a: PATO:0002007 ! convex 3-D shape + +[Term] +id: PATO:0001866 +name: prolate +def: "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a polar diameter longer than its equatorial diameter." [Wikipedia:http\://en.wikipedia.org/wiki/Prolate] +subset: cell_quality +subset: value_slim +synonym: "prolate spheroid" RELATED [] +xref: Image:http\://upload.wikimedia.org/wikipedia/commons/8/88/ProlateSpheroid.png +is_a: PATO:0001865 ! spheroid + +[Term] +id: PATO:0001867 +name: rectangular +def: "A shape quality inhering in a bearer by virtue of it being a quadrilateral polygon in which all four angles are right angles." [Wikipedia:http\://en.wikipedia.org/wiki/Rectangular] +subset: cell_quality +subset: value_slim +xref: Image:http\://upload.wikimedia.org/wikipedia/en/e/ee/Shaperec.svg +is_a: PATO:0002317 ! parallelogram + +[Term] +id: PATO:0001868 +name: autofluorescence +def: "A fluorescence quality inhering in a bearer by virtue of the bearer's exhibiting fluorescence which is self-induced." [PATOC:mb] +subset: attribute_slim +is_a: PATO:0000018 ! fluorescence + +[Term] +id: PATO:0001869 +name: pathological +def: "A quality inhering in a bearer by virtue of the bearer's being abnormal and having a destructive effect on living tissue." [PATOC:cjm] +subset: abnormal_slim +subset: value_slim +is_a: PATO:0000460 ! abnormal + +[Term] +id: PATO:0001870 +name: crescent-shaped +def: "A shape quality inhering in a circular disk by virtue of the bearer's having a segment of another circle removed from its edge, so that what remains is a shape enclosed by two circular arcs of different diameters which intersect at two points (usually in such a manner that the enclosed shape does not include the center of the original circle)." [Wikipedia:http\://en.wikipedia.org/wiki/Crescent] +subset: cell_quality +subset: value_slim +synonym: "bow-shaped" RELATED [] +synonym: "crescentic" EXACT [] +synonym: "lunate" RELATED [] +xref: Image:http\://upload.wikimedia.org/wikipedia/commons/7/74/Crescent.svg +is_a: PATO:0002006 ! 2-D shape + +[Term] +id: PATO:0001871 +name: reniform +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having the shape of a kidney." [ISBN:0881923214] +subset: value_slim +synonym: "bean shaped" RELATED [] +synonym: "kidney-shaped" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001872 +name: cuboid +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resemblance to a cube (a 3-D shape with a square cross section)." [PATOC:MAH] +subset: cell_quality +subset: value_slim +synonym: "block-like" RELATED [] +synonym: "cuboidal" EXACT [] +is_a: PATO:0002007 ! convex 3-D shape +relationship: has_cross_section PATO:0000413 ! square + +[Term] +id: PATO:0001873 +name: cylindrical +alt_id: PATO:0001203 +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a consistently-sized round cross section." [PATOC:MAH] +subset: cell_quality +subset: value_slim +synonym: "rod-like" EXACT [] +synonym: "rod-shaped" EXACT [] +synonym: "tubulate" NARROW [] +is_a: PATO:0002007 ! convex 3-D shape +relationship: has_cross_section PATO:0000411 ! circular + +[Term] +id: PATO:0001874 +name: discoid +def: "A shape quality inhering in a bearer by virtue of the bearer's being cylindrical, in which the height is less than the diameter." [PATOC:cjm] +subset: cell_quality +subset: value_slim +synonym: "disc-shaped" EXACT [] +synonym: "disk-shaped" EXACT [] +is_a: PATO:0001873 ! cylindrical + +[Term] +id: PATO:0001875 +name: triangular +def: "A shape quality inhering in a bearer by virtue of the bearer's having three angles." [wordreference:wordreference] +subset: cell_quality +subset: value_slim +synonym: "delta shaped" RELATED [] +synonym: "deltoid" EXACT [] +synonym: "triangle" RELATED [] +synonym: "triangle-shaped" RELATED [] +is_a: PATO:0002006 ! 2-D shape + +[Term] +id: PATO:0001876 +name: dumbbell-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two parts, roughly spherical and of equal size, connected by a bar." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001877 +name: lanceolate +def: "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle; attached at the broad end." [PATOC:GVG] +subset: cell_quality +subset: value_slim +synonym: "spear-shaped" EXACT [] +is_a: PATO:0001419 ! sharp + +[Term] +id: PATO:0001878 +name: sigmoid +def: "A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped." [PATOC:CJM] +subset: cell_quality +subset: value_slim +synonym: "S-shaped" EXACT [] +synonym: "sigmoidal" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001879 +name: U-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter U." [WordNet:WordNet] +subset: cell_quality +subset: value_slim +synonym: "horseshoe" NARROW [] +synonym: "horseshoe shaped" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001880 +name: caudate +def: "A quality inhering in a bearer by virtue of the bearer's having a tail or tail-like projection." [PATOC:cjm] +subset: value_slim +synonym: "caudal" EXACT [] +synonym: "tailed" RELATED [] +is_a: PATO:0000623 ! exserted + +[Term] +id: PATO:0001881 +name: arrow-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's forming two equal obtuse triangles with a short side in common." [ISBN:0881923214, RKC:RKC] +comment: Gradually enlarged at the base, like the head of an arrow. +subset: cell_quality +subset: value_slim +synonym: "sagittate" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001882 +name: limaciform +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a slug." [PATOC:CJM] +subset: cell_quality +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001883 +name: clavate +alt_id: PATO:0001797 +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's gradually becoming thicker towards the end." [MP:0000576] +subset: value_slim +synonym: "club-like" EXACT [] +synonym: "club-shaped" EXACT [] +synonym: "clubbed" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001884 +name: hydrophobicity +def: "A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water." [WordNet:WordNet] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001018 ! physical quality +disjoint_from: PATO:0001886 ! hydrophilicity +relationship: is_opposite_of PATO:0001886 ! hydrophilicity + +[Term] +id: PATO:0001885 +name: hydrophobic +def: "A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water." [WordNet:WordNet] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001884 ! hydrophobicity +relationship: is_opposite_of PATO:0001887 ! hydrophilic + +[Term] +id: PATO:0001886 +name: hydrophilicity +def: "A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water." [answers.com:answers.com] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001018 ! physical quality +relationship: is_opposite_of PATO:0001884 ! hydrophobicity + +[Term] +id: PATO:0001887 +name: hydrophilic +def: "A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water." [WordNet:WordNet] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001886 ! hydrophilicity +relationship: is_opposite_of PATO:0001885 ! hydrophobic + +[Term] +id: PATO:0001888 +name: miscibility +def: "A quality of a liquid inhering in a bearer by virtue of the bearer's ability to mix with (dissolve in) another liquid." [Chemicool:Chemicool] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0001548 ! quality of a liquid + +[Term] +id: PATO:0001889 +name: scalloped +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having the border, edge, or outline cut into a series of segments of circles resembling a scallop-shell." [Oxford:EnglishDictionary] +subset: cell_quality +subset: value_slim +synonym: "crenate" EXACT [] +synonym: "crenulate" EXACT [] +is_a: PATO:0001976 ! serration + +[Term] +id: PATO:0001890 +name: tripartite +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being divided into three branches." [InfoVisual:InfoVisual] +subset: cell_quality +subset: value_slim +synonym: "trifurcate" EXACT [] +is_a: PATO:0000402 ! branched +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0001891 +name: ovate +def: "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; egg-shaped." [PATOC:mc] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "eccentric" RELATED [] +synonym: "egg-shaped" EXACT [] +synonym: "oval" EXACT [] +synonym: "ovoid" EXACT [] +is_a: PATO:0001865 ! spheroid +relationship: has_cross_section PATO:0000946 ! oblong + +[Term] +id: PATO:0001892 +name: decreased odor +def: "An odor quality of having decreased odor." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001331 ! odorous +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001331 ! odorous +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001893 ! increased odor + +[Term] +id: PATO:0001893 +name: increased odor +def: "An odor quality of having increased odor." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001331 ! odorous +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001331 ! odorous +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001892 ! decreased odor + +[Term] +id: PATO:0001894 +name: phenotypic sex +def: "An organismal quality inhering in a bearer by virtue of the bearer's physical expression of sexual characteristics." [] +subset: attribute_slim +is_a: PATO:0000047 ! biological sex + +[Term] +id: PATO:0001895 +name: mating type +def: "A biological sex quality inhering in an individual or a population that undergo sexual reproduction." [wikipedia:wikipedia] +subset: attribute_slim +is_a: PATO:0000047 ! biological sex + +[Term] +id: PATO:0001896 +name: unlumenized +def: "A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances." [PATOC:MAH] +subset: value_slim +is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0001897 ! lumenized + +[Term] +id: PATO:0001897 +name: lumenized +def: "A structure quality inhering in a bearer by virtue of the bearer's having a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances." [PATOC:MAH] +comment: See GO term: GO:0031974 membrane-enclosed lumen [DEF:"The enclosed volume within a sealed membrane or between two sealed membranes"]. +subset: value_slim +is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0001896 ! unlumenized + +[Term] +id: PATO:0001898 +name: increased circumference +def: "A circumference which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001648 ! circumference +is_a: PATO:0001712 ! increased perimeter +intersection_of: PATO:0001648 ! circumference +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001899 ! decreased circumference + +[Term] +id: PATO:0001899 +name: decreased circumference +def: "A circumference which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001648 ! circumference +is_a: PATO:0001713 ! decreased perimeter +intersection_of: PATO:0001648 ! circumference +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001898 ! increased circumference + +[Term] +id: PATO:0001900 +name: front +def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction +relationship: is_opposite_of PATO:0001901 ! back + +[Term] +id: PATO:0001901 +name: back +def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction +relationship: is_opposite_of PATO:0001900 ! front + +[Term] +id: PATO:0001902 +name: unidirectional +def: "A directional quality inhering in a bearer by virtue of the bearer's having one direction only." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction + +[Term] +id: PATO:0001903 +name: bi-directional +def: "A directional quality inhering in a bearer by virtue of the bearer's having two directions." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction + +[Term] +id: PATO:0001904 +name: circling direction +def: "A directional quality inhering in a bearer by virtue of the bearer's direction approximating the shape of a circle." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000039 ! direction + +[Term] +id: PATO:0001905 +name: has normal numbers of parts of type +def: "The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part." [PATOC:CJM] +subset: relational_slim +synonym: "having physical part" EXACT [] +is_a: PATO:0001555 ! has number of +relationship: reciprocal_of PATO:0002050 ! normal amount + +[Term] +id: PATO:0001906 +name: movement quality +def: "A physical quality inhering in a bearer by virtue of the bearer's participation in movement." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0001907 +name: botryoidal +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's being like the surface of a compact mass of grapes." [PATOC:cvs] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape + +[Term] +id: PATO:0001908 +name: multinucleate +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002505 ! nucleated + +[Term] +id: PATO:0001909 +name: trinucleate +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having three nuclei." [thefreedictionary:thefreedictionary] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001908 ! multinucleate + +[Term] +id: PATO:0001910 +name: folded +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's one part being layered over another connected part." [PATOC:cjm] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape + +[Term] +id: PATO:0001911 +name: circling +def: "A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting movement in a circular course." [PATOC:mb] +subset: value_slim +is_a: PATO:0002076 ! movement behavioral quality + +[Term] +id: PATO:0001912 +name: physiological state +def: "A quality of a single process inhering in a bearer by virtue of the state of bearer's mechanical, physical, and biochemical processes." [PATOC:mb] +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0001913 +name: ictal +def: "A physiological state which is characterized by periods of high-frequency high amplitude electrical activity in neuronal tissue." [PATOC:mb] +is_a: PATO:0001912 ! physiological state + +[Term] +id: PATO:0001914 +name: non-ictal +def: "A physiological state which is characterized by normal electrical activity in neuronal tissue." [PATOC:mb] +is_a: PATO:0001912 ! physiological state + +[Term] +id: PATO:0001915 +name: anterodorsal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and upper surface of an organism relative to another entity." [PATOC:wd] +subset: relational_slim +subset: value_slim +is_a: PATO:0001632 ! anterior to + +[Term] +id: PATO:0001916 +name: posterodorsal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and upper surface of an organism relative to another entity." [PATOC:wd] +subset: relational_slim +subset: value_slim +is_a: PATO:0001633 ! posterior to + +[Term] +id: PATO:0001917 +name: anteroventral to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and abdomen of an organism relative to another entity." [PATOC:wd] +subset: relational_slim +subset: value_slim +is_a: PATO:0001632 ! anterior to + +[Term] +id: PATO:0001918 +name: posteroventral to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and abdomen of an organism relative to another entity." [PATOC:wd] +subset: relational_slim +subset: value_slim +is_a: PATO:0001633 ! posterior to + +[Term] +id: PATO:0001919 +name: mislocalised dorsally +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the back or upper surface of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001920 +name: mislocalised ventrally +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the abdomen of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001921 +name: mislocalised anteriorly +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the front of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001922 +name: mislocalised posteriorly +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the rear of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001923 +name: mislocalised laterally +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the side of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001924 +name: mislocalised medially +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the middle of an organism." [PATOC:mb] +subset: value_slim +is_a: PATO:0000628 ! mislocalised + +[Term] +id: PATO:0001925 +name: surface feature shape +def: "A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell." [PATOC:CJM] +comment: This quality either inheres directly in the surface, or in the entity that has the surface. For example, to say that a particular fly wing is curved is shorthand for saying the wing has a surface which is curved. +subset: attribute_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001926 +name: increased fluorescence +def: "A fluorescence which is higher than normal." [PATOC:GVG] +subset: value_slim +synonym: "high fluorescence" EXACT [] +is_a: PATO:0001290 ! fluorescent +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001290 ! fluorescent +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001927 ! decreased fluorescence + +[Term] +id: PATO:0001927 +name: decreased fluorescence +def: "A fluorescence which is lower than normal." [PATOC:GVG] +subset: value_slim +synonym: "low fluorescence" EXACT [] +is_a: PATO:0001290 ! fluorescent +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001290 ! fluorescent +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001926 ! increased fluorescence + +[Term] +id: PATO:0001928 +name: blistered +def: "A texture quality inhering in a bearer by virtue of a local accumulation of fluid underneath the surface of the bearer." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "blistering" NARROW [] +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0001929 +name: variability of shape +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits shape variation or change." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001303 ! variability +relationship: towards PATO:0000052 ! shape + +[Term] +id: PATO:0001930 +name: variant shape +def: "A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001929 ! variability of shape +relationship: is_opposite_of PATO:0001931 ! invariant shape + +[Term] +id: PATO:0001931 +name: invariant shape +def: "A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001929 ! variability of shape +relationship: is_opposite_of PATO:0001930 ! variant shape + +[Term] +id: PATO:0001932 +name: alternate placement +def: "A pattern quality inhering in a bearer by virtue of the bearer's being placed alternately one above the other." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000440 ! regular spatial pattern + +[Term] +id: PATO:0001933 +name: opposite +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned on opposite sides on the same plane." [ISBN:0881923214] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001934 +name: orbicular +def: "A shape quality inhering in a bearer by virtue of the bearer's being perfectly circular." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000411 ! circular + +[Term] +id: PATO:0001935 +name: obtuse +def: "A shape quality inhering in a bearer by virtue of the bearer's being roundish, a little inclining to be oblong." [ISBN:0881923214] +subset: value_slim +synonym: "roundish" EXACT [] +is_a: PATO:0000411 ! circular + +[Term] +id: PATO:0001936 +name: obovate +def: "A spheroid quality inhering in a bearer by virtue of the bearer's being egg-shaped and flat, with the narrow end attached to the base." [wordreference:wordreference] +subset: value_slim +synonym: "obovoid" RELATED [] +is_a: PATO:0001891 ! ovate + +[Term] +id: PATO:0001937 +name: spatulate +def: "A shape quality inhering in a bearer by virtue of the bearer's being oblong, with the lower end very much attenuated." [ISBN:0881923214] +subset: value_slim +synonym: "spathulate" EXACT [] +is_a: PATO:0000946 ! oblong + +[Term] +id: PATO:0001938 +name: rhomboid +def: "A spheroid quality inhering in a bearer by virtue of the bearer's being oval and a little angular in the middle." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0002317 ! parallelogram + +[Term] +id: PATO:0001940 +name: gigantic +def: "A size quality inhering in a bearer by virtue of the bearer's being many folds greater relative to the normal average." [PATOC:UMH] +subset: value_slim +synonym: "giant" EXACT [] +is_a: PATO:0000586 ! increased size + +[Term] +id: PATO:0001941 +name: yellow green +def: "A color consisting of yellow and green hues." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001942 +name: brown green +def: "A color consisting of brown and green hues." [PATOC:GVG] +synonym: "olive green" EXACT [] +is_a: PATO:0000320 ! green + +[Term] +id: PATO:0001943 +name: lilac +def: "A purple color which has low saturation and low brightness." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000951 ! purple + +[Term] +id: PATO:0001944 +name: yellow orange +def: "A color consisting of yellow and orange hue." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000953 ! orange + +[Term] +id: PATO:0001945 +name: ochre +def: "A moderate yellow-orange to orange color." [wordreference:wordreference] +subset: value_slim +is_a: PATO:0001944 ! yellow orange + +[Term] +id: PATO:0001946 +name: banded +def: "A color pattern inhering in a bearer by virtue of bearer's exhibiting transverse stripes of one hue or degree of saturation crossing another." [ISBN:0881923214] +subset: value_slim +synonym: "striped" EXACT [] +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0001947 +name: netted +def: "A color pattern inhering in a bearer by virtue of bearer's being covered with reticulated lines of a different hue or degree of saturation." [ISBN:0881923214] +subset: value_slim +synonym: "net-like" EXACT [] +synonym: "reticulated" EXACT [] +is_a: PATO:0001533 ! multi-colored + +[Term] +id: PATO:0001948 +name: furrowed +def: "A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by two or more parallel channels." [PATOC:JE] +subset: value_slim +synonym: "fluted" RELATED [] +is_a: PATO:0002255 ! grooved + +[Term] +id: PATO:0001949 +name: pointleted +def: "A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly in a little point." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0001419 ! sharp + +[Term] +id: PATO:0001950 +name: blunt +def: "A shape quality inhering in a bearer by virtue of the bearer's terminating gradually in a rounded end." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000944 ! sharpness + +[Term] +id: PATO:0001951 +name: whorled +def: "A spatial pattern inhering in a bearer by virtue of the bearer's being in opposition round a common axis." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000060 ! spatial pattern + +[Term] +id: PATO:0001952 +name: distichous +def: "A spatial quality inhering in a bearer by virtue of the bearer's being arranged in two opposite rows (and hence in the same plane)." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0001953 +name: decussate +def: "A pattern quality inhering in a bearer by virtue of the bearer's consisting of paired parts that alternately cross each other." [ISBN:0881923214] +subset: value_slim +synonym: "crosscutting" EXACT [] +synonym: "intercrossing" EXACT [] +synonym: "intersecting" EXACT [] +is_a: PATO:0000440 ! regular spatial pattern + +[Term] +id: PATO:0001954 +name: subulate +def: "A shape quality inhering in a bearer by virtue of the bearer's being linear, very narrow, tapering to a very fine point from a narrow base." [ISBN:0881923214] +subset: value_slim +synonym: "awl-shaped" EXACT [] +synonym: "needle-like" EXACT [] +is_a: PATO:0001199 ! linear + +[Term] +id: PATO:0001955 +name: cuneate +def: "A shape quality inhering in a bearer by virtue of the bearer's being narrowly triangular, wider at the apex and tapering toward the base." [wordreference:wordreference] +subset: value_slim +synonym: "wedge-shaped" EXACT [] +is_a: PATO:0001875 ! triangular + +[Term] +id: PATO:0001956 +name: variability of size +def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits size variation or change." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001303 ! variability +relationship: towards PATO:0000117 ! size + +[Term] +id: PATO:0001957 +name: decreased variability of size +def: "A variability of size which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "low variability of size" EXACT [] +intersection_of: PATO:0001956 ! variability of size +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001958 ! increased variability of size + +[Term] +id: PATO:0001958 +name: increased variability of size +def: "A variability of size which is relatively high." [PATOC:GVG] +subset: value_slim +synonym: "high variability of size" EXACT [] +intersection_of: PATO:0001956 ! variability of size +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001957 ! decreased variability of size + +[Term] +id: PATO:0001959 +name: defasciculated +def: "A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated." [PATOC:mw] +subset: value_slim +is_a: PATO:0002013 ! fasciculation +relationship: is_opposite_of PATO:0001861 ! fasciculated + +[Term] +id: PATO:0001960 +name: interdigitated +def: "A shape quality inhering in a bearer by virtue of the bearer's parts or projections being interlocked; for example, the fingers of two hands that are clasped." [PATOC:wdahdul] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001961 +name: in contact with +def: "A structural quality inhering in a bearer by virtue of the bearer's touching another entity." [PATOC:wdahdul] +subset: relational_slim +subset: value_slim +synonym: "contiguous" RELATED [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001962 +name: involute +def: "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled inwards spirally on each side." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000405 ! curled + +[Term] +id: PATO:0001963 +name: revolute +def: "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled backwards spirally on each side." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000405 ! curled + +[Term] +id: PATO:0001964 +name: circinate +def: "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled spirally downwards." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000405 ! curled + +[Term] +id: PATO:0001965 +name: reclinate +def: "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being bent down upon their stalk." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000405 ! curled + +[Term] +id: PATO:0001966 +name: convolute +def: "A curled quality inhering in a bearer by virtue of the bearer's one edge of its surface being wholly rolled up in another." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000405 ! curled + +[Term] +id: PATO:0001967 +name: actinodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having three or more primary branches diverging radially from a single point." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001968 +name: parallelodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having two or more parallel primary branches originate beside each other and converge apically." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001969 +name: craspedodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches terminating at the margin." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001970 +name: brochidodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches joined together in a series of prominent arches." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001971 +name: cladodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches freely branching toward the margin." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001972 +name: reticulodromous +def: "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches branching into a reticulum toward the margin." [Hickey:1988] +subset: value_slim +is_a: PATO:0000402 ! branched + +[Term] +id: PATO:0001973 +name: cuspidate +def: "A shape quality inhering in a bearer by virtue of the bearer's being tapering gradually into a rigid point." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0001500 ! tapered + +[Term] +id: PATO:0001974 +name: retuse +def: "A shape quality inhering in a bearer by virtue of the bearer's terminating in a round end, the centre of which is depressed." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0001950 ! blunt + +[Term] +id: PATO:0001975 +name: unserrated +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0001976 ! serration +relationship: is_opposite_of PATO:0001206 ! serrated + +[Term] +id: PATO:0001976 +name: serration +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having or lacking sharp straight-edged teeth pointing to the apex." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002267 ! edge shape + +[Term] +id: PATO:0001977 +name: angular +def: "A shape quality inhering in a bearer by virtue of the bearer's having at least one salient angle on the margin." [PATOC:GVG] +subset: value_slim +synonym: "angulate" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001978 +name: cut +def: "A shape quality inhering in a bearer by virtue of the bearer's being regularly divided by deep incisions." [ISBN:0881923214] +subset: value_slim +synonym: "incised" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001979 +name: lobed +def: "A shape quality inhering in a bearer by virtue of the bearer's being partly divided into a determinate number of regions." [ISBN:0881923214] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001980 +name: digitate +def: "A shape quality inhering in a bearer by virtue of the bearer's having distinct parts arising from a common point or center." [thefreedictionary:thefreedictionary] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001981 +name: auriculate +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an ear." [url:http\://www.thefreedictionary.com/auriculate] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001982 +name: attenuate +def: "A shape quality inhering in a bearer by virtue of the bearer's gradually tapering to a slender point." [url:http\://www.thefreedictionary.com/attenuate] +subset: value_slim +is_a: PATO:0001500 ! tapered + +[Term] +id: PATO:0001983 +name: perfoliate +def: "A structural quality inhering in a bearer by virtue of the bearer's two basal lobes being united together." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0001984 +name: decurrent +def: "A shape quality inhering in a bearer by virtue of the bearer's being prolonged below the point of insertion." [ISBN:0881923214] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001985 +name: frozen +def: "A quality inhering in a bearer by virtue of the bearer's being kept below its freezing point." [OBI:OBI] +subset: value_slim +is_a: PATO:0000146 ! temperature + +[Term] +id: PATO:0001986 +name: dissolved +def: "A quality inhering in a bearer by virtue of the bearer's passing into solution." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001536 ! solubility + +[Term] +id: PATO:0001987 +name: saccular +def: "A structural quality inhering in a bearer by virtue of the bearer's having a three dimensional cavity with a narrow or no opening, and often containing an anatomical substance." [PATOC:MAH] +subset: value_slim +synonym: "sacular" EXACT [] +is_a: PATO:0002014 ! structure, cavities + +[Term] +id: PATO:0001988 +name: quadrangular +def: "A shape quality inhering in a bearer by virtue of the bearer's having four angles and four sides." [url:http\://www.oed.com/] +subset: value_slim +is_a: PATO:0002006 ! 2-D shape + +[Term] +id: PATO:0001989 +name: sinuous +def: "A curvature quality inhering in a bearer by virtue of the bearer's having many curves and turns." [PATOC:GVG] +subset: value_slim +synonym: "twisted" RELATED [] +is_a: PATO:0001591 ! curvature + +[Term] +id: PATO:0001990 +name: duration of disease +def: "A duration quality of a process inhering in a disease by virtue of the bearer's duration of an impairment of health or of a condition of abnormal functioning." [PATOC:GVG] +comment: MAH: I think this term should be obsoleted. Is it used? +is_a: PATO:0001309 ! duration + +[Term] +id: PATO:0001991 +name: immortal +def: "A quality inhering in a bearer by virtue of the bearer's disposition to being capable of indefinite growth or division." [answers.com:answers.com] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000169 ! viability + +[Term] +id: PATO:0001992 +name: cellularity +def: "An organismal quality inhering in a bearer by virtue of the bearer's consisting cells." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001995 ! organismal quality + +[Term] +id: PATO:0001993 +name: multicellular +def: "A cellularity quality inhering in a bearer by virtue of the bearer's consisting of more than one cell." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001992 ! cellularity +disjoint_from: PATO:0001994 ! unicellular + +[Term] +id: PATO:0001994 +name: unicellular +def: "A cellularity quality inhering in a bearer by virtue of the bearer's consisting of exactly one cell." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001992 ! cellularity + +[Term] +id: PATO:0001995 +name: organismal quality +def: "A quality that inheres in an entire organism or part of an organism." [PATOC:CJM] +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001997 +name: decreased amount +alt_id: PATO:0000419 +alt_id: PATO:0000468 +def: "An amount which is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "decreased" RELATED [] +synonym: "decreased number" EXACT [] +synonym: "present in fewer numbers in organism" EXACT [] +synonym: "reduced" RELATED [] +synonym: "subnumerary" RELATED [] +is_a: PATO:0000467 ! present +is_a: PATO:0002301 ! decreased quality +intersection_of: PATO:0000070 ! amount +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000470 ! increased amount + +[Term] +id: PATO:0001998 +name: conspicuousness +def: "A quality inhering in a bearer by virtue of its visibility." [PATOC:MAH] +comment: This term was created as a grouping term for the 2 terms "conspicuous" and "inconspicuous". However, it is not clear if these terms should even remain in PATO. +is_a: PATO:0000068 ! qualitative + +[Term] +id: PATO:0001999 +name: lacks parts or has fewer parts of type +def: "The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type." [PATOC:CJM] +subset: relational_slim +synonym: "loss of" EXACT [] +is_a: PATO:0002083 ! altered number of + +[Term] +id: PATO:0002000 +name: lacks all parts of type +alt_id: PATO:0001557 +def: "A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity." [PATOC:CJM] +comment: Example: [E=organism Q=lacks_all_parts_of_type E2=Wing] - applies to an organism. A relational quality in which the bearer entity has no parts of the specified type. The bearer of this quality has_part = 0 of the indicated entity type, where a comparable organism usually has at least 1 part of the same type. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e lacks all parts of type X at time t, then there exists no instances x of X at t such that x part_of e that has no wings, where wings are normally present in that organism type. In OWL this is equivalent to a restriction on the OBO_REL:has_part relation with cardinality=0, i.e has_part 0 E2. +subset: relational_slim +synonym: "lacks all physical parts of type" EXACT [] +xref: OBO_REL:lacks_part +is_a: PATO:0001999 ! lacks parts or has fewer parts of type +relationship: reciprocal_of PATO:0000462 ! absent + +[Term] +id: PATO:0002001 +name: has fewer parts of type +alt_id: PATO:0001569 +def: "The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly." [PATOC:CJM] +comment: Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type. +subset: relational_slim +synonym: "decreased number of" EXACT [] +synonym: "has decreased number of" EXACT [] +synonym: "has fewer physical parts of type" EXACT [] +is_a: PATO:0001999 ! lacks parts or has fewer parts of type +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001999 ! lacks parts or has fewer parts of type +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002002 ! has extra parts of type + +[Term] +id: PATO:0002002 +name: has extra parts of type +alt_id: PATO:0001560 +def: "The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part." [PATOC:CJM] +comment: In polydactyly, the bearer of the quality is the hand, and the entity type being counted is 'finger'. In EQ syntax, E=hand, Q= E2=finger. +subset: relational_slim +synonym: "has extra parts of" EXACT [] +synonym: "has increased number of" EXACT [] +synonym: "having extra physical parts" EXACT [] +synonym: "having supernumerary physical parts" EXACT [] +synonym: "increased number of" EXACT [] +is_a: PATO:0002083 ! altered number of +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002083 ! altered number of +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002001 ! has fewer parts of type + +[Term] +id: PATO:0002003 +name: population quality +def: "A quality that inheres in an entire population or part of a population." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0002004 +name: obsolete surface shape +def: "A shape that inheres in a part of a surface. An object can have different surface shapes on different parts of its surface." [PATOC:CJM] +comment: Consider PATO:0001925 +subset: attribute_slim +is_obsolete: true + +[Term] +id: PATO:0002005 +name: concavity +def: "Surface shape that refers to the inward or outward curvature of the surface." [PATOC:MAH] +subset: attribute_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0002006 +name: 2-D shape +def: "A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity." [PATOC:CJM] +subset: attribute_slim +synonym: "2-D projection" RELATED [] +synonym: "cross-sectional" RELATED [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0002007 +name: convex 3-D shape +def: "A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave." [PATOC:CJM] +comment: Use this term or an is_a child of this term when the entire shape of the object is known. +subset: attribute_slim +xref: Image:http\://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png +is_a: PATO:0002266 ! 3-D shape +relationship: has_cross_section PATO:0002006 ! 2-D shape +relationship: is_opposite_of PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0002008 +name: concave 3-D shape +def: "A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave." [PATOC:CJM] +subset: attribute_slim +xref: Image:http\://en.wikipedia.org/wiki/Image\:Convex_polygon_illustration2.png +is_a: PATO:0002266 ! 3-D shape +relationship: has_part PATO:0001857 ! concave +relationship: is_opposite_of PATO:0002007 ! convex 3-D shape + +[Term] +id: PATO:0002009 +name: branchiness +def: "A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:MAH] +subset: attribute_slim +subset: cell_quality +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0002010 +name: looseness +def: "A texture quality inhering in a bearer by virtue of the bearer's bing full of small openings or gaps." [url:http\://www.wordreference.com/definition/loose] +subset: value_slim +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0002011 +name: neoplastic +def: "A structural quality which is held by a bearer when the latter's disposition the presence of abnormally proliferating masses of cells." [PATOC:MAH] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +synonym: "tumorous" EXACT [] +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0002012 +name: coating +def: "A texture quality that exists through a liquid cover on the surface of the bearer." [Wikipedia:Wikipedia] +subset: value_slim +is_a: PATO:0000150 ! texture + +[Term] +id: PATO:0002013 +name: fasciculation +def: "A structural quality inhering in a bearer by virtue of whether the bearer forms a bundle of anatomical fibers, as of muscle or nerve." [answers.com:http\://www.answers.com/] +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0002014 +name: structure, cavities +def: "A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0002016 +name: magnitude +is_a: PATO:0000068 ! qualitative + +[Term] +id: PATO:0002017 +name: increased magnitude +synonym: "high magnitude" EXACT [] +is_a: PATO:0002016 ! magnitude +relationship: is_opposite_of PATO:0002018 ! decreased magnitude + +[Term] +id: PATO:0002018 +name: decreased magnitude +synonym: "low magnitude" EXACT [] +is_a: PATO:0002016 ! magnitude +relationship: is_opposite_of PATO:0002017 ! increased magnitude + +[Term] +id: PATO:0002019 +name: aplastic growth +def: "A growth quality of occurrent in which the growth of an organism, structure or group of organisms does not occur." [PATOC:MAH] +synonym: "agenesis" NARROW [] +is_a: PATO:0001433 ! growth quality of occurrent + +[Term] +id: PATO:0002020 +name: pale pink +def: "Pink color having high brightness and low saturation." [PATOC:GVG] +is_a: PATO:0000954 ! pink + +[Term] +id: PATO:0002021 +name: conical +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a cone (a 3-D shape with a round cross section that tapers)." [Wikipedia:http\://en.wikipedia.org/wiki/Cone_(geometry)] +subset: value_slim +synonym: "cone-shaped" EXACT [] +xref: Image:http\://upload.wikimedia.org/wikipedia/commons/d/d2/Cone_3d.png +is_a: PATO:0002007 ! convex 3-D shape + +[Term] +id: PATO:0002022 +name: villiform +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a minute projection (villus)." [PATOC:PEM] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0002023 +name: apical-basal polarity +def: "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an apical-basal axis." [PATOC:MAH] +subset: value_slim +is_a: PATO:0001769 ! positional polarity + +[Term] +id: PATO:0002024 +name: anterior-posterior polarity +def: "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the anterior-posterior axis." [PATOC:MAH] +subset: value_slim +synonym: "rostral-caudal polarity" EXACT [] +synonym: "superior-caudal polarity (human torso)" EXACT [] +is_a: PATO:0001769 ! positional polarity + +[Term] +id: PATO:0002025 +name: external angle +def: "A convex angle that is formed by one side of a polygon and a line extended from an adjacent side." [http://en.wikipedia.org/wiki/Internal_angle] +subset: relational_slim +subset: value_slim +is_a: PATO:0001053 ! convex angle to + +[Term] +id: PATO:0002026 +name: non-progressive +def: "A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time." [PATOC:GVG] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0001818 ! progressive +created_by: george gkoutos +creation_date: 2008-12-18T12:49:19Z + +[Term] +id: PATO:0002027 +name: osmolality +def: "A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per kilogram of solvent." [Wikipedia:http\://en.wikipedia.org/wiki/Osmolarity] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0000033 ! concentration of +created_by: george +creation_date: 2009-01-27T10:53:11Z + +[Term] +id: PATO:0002028 +name: decreased osmolality +def: "An osmolality which is relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "low osmolality" EXACT [] +is_a: PATO:0002027 ! osmolality +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002027 ! osmolality +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002029 ! increased osmolality +created_by: george +creation_date: 2009-01-27T10:55:33Z + +[Term] +id: PATO:0002029 +name: increased osmolality +def: "An osmolality which is relatively high." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "high osmolality" EXACT [] +is_a: PATO:0002027 ! osmolality +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002027 ! osmolality +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002028 ! decreased osmolality +created_by: george +creation_date: 2009-01-27T10:56:19Z + +[Term] +id: PATO:0002030 +name: specificity to +def: "A molecular quality that inheres in a molecular entity by virtue of whether the bearer exhibits the ability of a probe to react precisely with a specific target molecule." [PATOC:mc] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0002182 ! molecular quality +created_by: george +creation_date: 2009-01-27T11:13:52Z + +[Term] +id: PATO:0002031 +name: upturned +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved or tilted such that the tip points upwards." [PATOC:cjm] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: george +creation_date: 2009-01-27T11:23:45Z + +[Term] +id: PATO:0002032 +name: forward scatter +def: "A reflectivity quality inhering in light by virtue of the bearer's scattering occurring at small angle to the incident beam." [PATOC:mc] +subset: attribute_slim +is_a: PATO:0001294 ! radiation reflective quality +created_by: george +creation_date: 2009-01-27T11:38:49Z + +[Term] +id: PATO:0002033 +name: side scatter +def: "A reflective quality that is the light scattering occurring at wide angle (around 90 degrees) to the incident beam." [PATOC:mc] +subset: attribute_slim +is_a: PATO:0001294 ! radiation reflective quality +created_by: george +creation_date: 2009-01-27T11:39:36Z + +[Term] +id: PATO:0002034 +name: undivided +def: "A shape quality inhering in a bearer by virtue of the bearer's being unseparated into parts or divisions." [PATOC:GVG] +subset: value_slim +synonym: "unseparated" RELATED [] +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2009-01-27T11:53:46Z + +[Term] +id: PATO:0002035 +name: ipsilateral to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being on the same side in relation to another structure." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +synonym: "ipsilateral" EXACT [] +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2009-02-01T02:04:11Z + +[Term] +id: PATO:0002036 +name: axial to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located towards the central axis of the organism or an extremity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2009-02-01T02:06:20Z + +[Term] +id: PATO:0002037 +name: degeneration +def: "A structural quality inhering in a bearer by virtue of the bearer exhibiting deterioration of its structure." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-02-03T11:13:19Z + +[Term] +id: PATO:0002038 +name: non-degenerate +def: "A structural quality inhering in a bearer whose structure which does not deteriorate." [PATOC:GVG] +subset: value_slim +synonym: "not degenerate" EXACT [] +is_a: PATO:0002037 ! degeneration +relationship: is_opposite_of PATO:0000639 ! degenerate +created_by: george +creation_date: 2009-02-03T11:14:54Z + +[Term] +id: PATO:0002039 +name: biconcave +def: "A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001857 ! concave +relationship: is_opposite_of PATO:0002040 ! biconvex + +[Term] +id: PATO:0002040 +name: biconvex +def: "A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface." [thefreedictionary:http\://www.thefreedictionary.com/biconvexity] +subset: value_slim +xref: Image:http\://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx +is_a: PATO:0001355 ! convex +relationship: is_opposite_of PATO:0002039 ! biconcave + +[Term] +id: PATO:0002041 +name: anterior-posterior diameter +def: "A diameter that is along the anterior-posterior axis." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001334 ! diameter + +[Term] +id: PATO:0002042 +name: decreased anterior-posterior diameter +def: "An anterior-posterior diameter quality which is relatively small." [PATOC:GVG] +subset: value_slim +synonym: "low anterior-posterior diameter" EXACT [] +is_a: PATO:0001715 ! decreased diameter +is_a: PATO:0002041 ! anterior-posterior diameter +intersection_of: PATO:0002041 ! anterior-posterior diameter +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002043 ! increased anterior-posterior diameter + +[Term] +id: PATO:0002043 +name: increased anterior-posterior diameter +def: "An anterior-posterior diameter quality which is relatively large." [PATOC:GVG] +subset: value_slim +synonym: "high anterior-posterior diameter" EXACT [] +is_a: PATO:0001714 ! increased diameter +is_a: PATO:0002041 ! anterior-posterior diameter +intersection_of: PATO:0002041 ! anterior-posterior diameter +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002042 ! decreased anterior-posterior diameter + +[Term] +id: PATO:0002044 +name: trapezoid +def: "A shape quality inhering in a bearer by virtue of the bearer's being a quadrilateral with two parallel sides." [PATOC:GVG] +subset: value_slim +synonym: "trapezoidal" EXACT [] +is_a: PATO:0001988 ! quadrangular + +[Term] +id: PATO:0002045 +name: dendritic +def: "A branched quality inhering in a bearer by virtue of the bearer's having smaller branches arising from larger branches. Resembling a tree in branching structure." [PATOC:cvs] +subset: value_slim +synonym: "dendriform" EXACT [] +synonym: "dendroid" EXACT [] +synonym: "dendroidal" EXACT [] +is_a: PATO:0000402 ! branched +created_by: george +creation_date: 2009-02-15T08:11:41Z + +[Term] +id: PATO:0002046 +name: abaxial to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being away from or on the opposite side of the central axis." [medical-dictionary:http\://medical-dictionary.thefreedictionary.com/abaxial] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george gkoutos +creation_date: 2009-03-03T04:16:11Z + +[Term] +id: PATO:0002047 +name: adaxial to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located on the side nearest to the axis of an organ or organism." [thefreedictionary:http\://www.thefreedictionary.com/adaxial] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george gkoutos +creation_date: 2009-03-03T04:22:28Z + +[Term] +id: PATO:0002048 +name: mosaicism +def: "An organismal quality inhering in a bearer by virtue of the bearer's having two or more cell populations that differ in genetic makeup. This situation can affect any type of cell, including blood cells, gametes (egg and sperm cells), and skin." [Medline:http\://www.nlm.nih.gov/medlineplus] +subset: attribute_slim +synonym: "heterogeneity" RELATED [] +is_a: PATO:0001995 ! organismal quality +created_by: george gkoutos +creation_date: 2009-03-03T04:30:52Z + +[Term] +id: PATO:0002049 +name: lateral and rotional curvature +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis and towards the side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001787 ! rotational curvature +created_by: George Gkoutos +creation_date: 2009-03-13T12:36:14Z + +[Term] +id: PATO:0002050 +name: normal amount +def: "An amount which normal." [PATOC:GVG] +synonym: "present in normal numbers in organism" EXACT [] +is_a: PATO:0000467 ! present +relationship: reciprocal_of PATO:0001905 ! has normal numbers of parts of type +created_by: george +creation_date: 2009-03-20T11:16:22Z + +[Term] +id: PATO:0002051 +name: increased occurrence +def: "An occurrence which is relatively high." [PATOC:GVG] +synonym: "increased incidence" EXACT [] +is_a: PATO:0000057 ! occurrence +is_a: PATO:0002304 ! increased process quality +intersection_of: PATO:0000057 ! occurrence +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002052 ! decreased occurrence +created_by: George Gkoutos +creation_date: 2009-03-26T11:10:11Z + +[Term] +id: PATO:0002052 +name: decreased occurrence +def: "An occurrence which is relatively low." [PATOC:GVG] +synonym: "decreased incidence" EXACT [] +is_a: PATO:0000057 ! occurrence +is_a: PATO:0002302 ! decreased process quality +intersection_of: PATO:0000057 ! occurrence +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002051 ! increased occurrence +created_by: George Gkoutos +creation_date: 2009-03-26T11:12:35Z + +[Term] +id: PATO:0002053 +name: dorso-ventrally flattened +def: "A quality inhering in a bearer by virtue of the bearer's being flattened along dorso-ventral axis." [PATOC:MSP] +subset: value_slim +is_a: PATO:0002254 ! flattened +created_by: George Gkoutos +creation_date: 2009-03-26T03:02:38Z + +[Term] +id: PATO:0002054 +name: laterally compressed +def: "A quality inhering in a bearer by virtue of the bearer's being flattened along transverse axis." [PATOC:msp] +subset: value_slim +synonym: "laterally flattened" EXACT [] +synonym: "transversely flattened" RELATED [] +is_a: PATO:0002254 ! flattened +created_by: George Gkoutos +creation_date: 2009-03-26T03:03:37Z + +[Term] +id: PATO:0002055 +name: increased fragility +def: "A fragility which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001362 ! fragile +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001362 ! fragile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002056 ! decreased fragility +created_by: George Gkoutos +creation_date: 2009-03-26T04:01:37Z + +[Term] +id: PATO:0002056 +name: decreased fragility +def: "A fragility which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001362 ! fragile +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001362 ! fragile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002055 ! increased fragility +created_by: George Gkoutos +creation_date: 2009-03-26T04:02:14Z + +[Term] +id: PATO:0002057 +name: increased area +def: "An area which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000586 ! increased size +is_a: PATO:0001323 ! area +intersection_of: PATO:0001323 ! area +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002058 ! decreased area +created_by: George Gkoutos +creation_date: 2009-03-30T04:11:43Z + +[Term] +id: PATO:0002058 +name: decreased area +def: "An area which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000587 ! decreased size +is_a: PATO:0001323 ! area +intersection_of: PATO:0001323 ! area +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002057 ! increased area +created_by: George Gkoutos +creation_date: 2009-03-30T04:12:11Z + +[Term] +id: PATO:0002059 +name: emmision wavelength +def: "The specific wavelength of light emitted by a fluorescent molecule, such as a labelled probe, upon absorption of light at the (higher) excitation wavelength." [web:http\://www.expertglossary.com/] +subset: attribute_slim +is_a: PATO:0001299 ! radiation emitting quality +created_by: George Gkoutos +creation_date: 2009-05-27T02:25:33Z + +[Term] +id: PATO:0002060 +name: absorption wavelength +def: "The specific wavelength of radiation that can be retained by a bearer." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001293 ! absorption quality +created_by: George Gkoutos +creation_date: 2009-05-27T02:33:32Z + +[Term] +id: PATO:0002062 +name: physical quality of a process +subset: attribute_slim +is_a: PATO:0001236 ! process quality +created_by: george +creation_date: 2009-06-05T09:16:46Z + +[Term] +id: PATO:0002063 +name: columnar +def: "A shape inhering in a bearer by virtue of the bearer's being elongated and cylindrical." [PATOC:me] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2009-07-01T01:44:06Z + +[Term] +id: PATO:0002064 +name: fenestrated +def: "A structure quality inhering in a bearer by virtue of the bearer's delimited by a surface with holes." [PATOC:me] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: George Gkoutos +creation_date: 2009-07-01T01:46:53Z + +[Term] +id: PATO:0002065 +name: star shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's being arranged like rays or radii; radiating from a common center." [PATOC:me] +subset: cell_quality +subset: mpath_slim +subset: value_slim +synonym: "stellate" EXACT [] +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2009-07-01T01:48:19Z + +[Term] +id: PATO:0002066 +name: crystal configuration +def: "A solid configuration inhering in a material entity by virtue of its constituent atoms, molecules, or ions being arranged in an orderly repeating pattern extending in all three spatial dimensions." [Wikipedia:http\://en.wikipedia.org/wiki/Crystal] +subset: value_slim +is_a: PATO:0001736 ! solid configuration +created_by: George Gkoutos +creation_date: 2009-07-01T01:50:40Z + +[Term] +id: PATO:0002067 +name: stratification +def: "A spatial pattern inhering in a bearer by virtue of the bearer's layered configuration." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000060 ! spatial pattern +created_by: George Gkoutos +creation_date: 2009-07-01T02:30:45Z + +[Term] +id: PATO:0002068 +name: stratified +def: "A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002067 ! stratification +relationship: is_opposite_of PATO:0002069 ! unstratified +created_by: George Gkoutos +creation_date: 2009-07-01T02:31:53Z + +[Term] +id: PATO:0002069 +name: unstratified +def: "A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002067 ! stratification +relationship: is_opposite_of PATO:0002068 ! stratified +created_by: George Gkoutos +creation_date: 2009-07-01T02:33:41Z + +[Term] +id: PATO:0002070 +name: affinity +def: "A molecular quality that arises from the molecular attraction exerted between two atoms or compounds." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2009-09-18T01:16:16Z + +[Term] +id: PATO:0002071 +name: increased affinity +def: "An affinity which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002070 ! affinity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002072 ! decreased affinity +created_by: George Gkoutos +creation_date: 2009-09-18T01:29:42Z + +[Term] +id: PATO:0002072 +name: decreased affinity +def: "An affinity which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002070 ! affinity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002071 ! increased affinity +created_by: George Gkoutos +creation_date: 2009-09-18T01:30:11Z + +[Term] +id: PATO:0002073 +name: avidity +def: "A molecular quality that arises from the synergistic strength of bond affinities between multiple bond interactions." [Wikipedia:Wikipedia] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2009-09-18T01:41:44Z + +[Term] +id: PATO:0002074 +name: increased avidity +def: "An avidity which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002073 ! avidity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002073 ! avidity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002075 ! decreased avidity +created_by: George Gkoutos +creation_date: 2009-09-18T01:45:56Z + +[Term] +id: PATO:0002075 +name: decreased avidity +def: "An avidity which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002073 ! avidity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002073 ! avidity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002074 ! increased avidity +created_by: George Gkoutos +creation_date: 2009-09-18T01:45:59Z + +[Term] +id: PATO:0002076 +name: movement behavioral quality +def: "A behavioral quality inhering in a bearer by virtue of the bearer's movement." [PATOC:GVG] +subset: attribute_slim +synonym: "movement behavioural quality" EXACT [] +is_a: PATO:0000186 ! behavioral quality +created_by: George Gkoutos +creation_date: 2009-09-18T02:04:48Z + +[Term] +id: PATO:0002077 +name: stacked +def: "A spatial quality inhering in a bearer by virtue of the bearer's being positioned with multiple entities of the same type above and below." [PATOC:CJM] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: George Gkoutos +creation_date: 2009-09-18T02:11:35Z + +[Term] +id: PATO:0002078 +name: hollow +def: "A quality inhering in a bearer by virtue of the bearer's having an empty space or cavity within." [url:http\://www.merriam-webster.com/dictionary/hollow] +subset: value_slim +is_a: PATO:0002014 ! structure, cavities +created_by: George Gkoutos +creation_date: 2009-09-18T02:19:20Z + +[Term] +id: PATO:0002080 +name: broken into two pieces +def: "A broken quality inhering in a bearer by virtue of the bearer's being seperated into two contiguous wholes." [PATOC:CJM] +subset: value_slim +is_a: PATO:0001444 ! broken +created_by: George Gkoutos +creation_date: 2009-09-21T10:18:11Z + +[Term] +id: PATO:0002081 +name: shattered +def: "A broken quality inhering in a bearer by virtue of the bearer's being broken into multiple contiguous wholes." [PATOC:GJM] +subset: value_slim +is_a: PATO:0001444 ! broken +created_by: George Gkoutos +creation_date: 2009-09-21T10:18:51Z + +[Term] +id: PATO:0002082 +name: partially broken +def: "A broken quality inhering in a bearer by virtue of the bearer's being still one contiguous whole but structurally damaged such that in danger of become two or more." [PATOC:CJM] +subset: value_slim +is_a: PATO:0001444 ! broken +created_by: George Gkoutos +creation_date: 2009-09-21T10:20:06Z + +[Term] +id: PATO:0002083 +name: altered number of +def: "Having extra or fewer parts." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0001555 ! has number of +created_by: George Gkoutos +creation_date: 2009-09-21T10:41:58Z + +[Term] +id: PATO:0002084 +name: obsolete post-mortem +def: "The period after death of the organism." [thefreedictionary:thefreedictionary] +comment: Terms were requested by the OBI consortium but it was later decided that the term was not reflecting a quality rather what it might be refered to as a "conferred quality". +subset: value_slim +is_obsolete: true +created_by: George Gkoutos +creation_date: 2009-09-25T11:29:21Z + +[Term] +id: PATO:0002085 +name: obsolete pre-mortem +def: "The period before death of the organism." [merriam-webster:merriam-webster] +comment: Terms were requested by the OBI consortium but it was later decided that the term was not reflecting a quality rather what it might be refered to as a "conferred quality". +subset: value_slim +is_obsolete: true +created_by: George Gkoutos +creation_date: 2009-09-25T11:31:13Z + +[Term] +id: PATO:0002087 +name: bullet-shaped +def: "A quality inhering in a bearer by virtue of the bearer's being short and wide and tapered distally." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape +created_by: George Gkoutos +creation_date: 2009-09-30T09:53:43Z + +[Term] +id: PATO:0002088 +name: monocystic +def: "A structure quality inhering in a bearer by virtue of the bearer's body consisting of one sac." [mondofacto:mondofacto] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001673 ! cystic +created_by: George Gkoutos +creation_date: 2009-10-01T03:00:20Z + +[Term] +id: PATO:0002089 +name: polycystic +def: "A structure quality inhering in a bearer by virtue of the bearer's body containing more than one cyst - formations of an epithelium bounded cavity not associated with neoplasia." [PATOC:GVG] +subset: value_slim +synonym: "multicystic" EXACT [] +is_a: PATO:0001673 ! cystic +created_by: George Gkoutos +creation_date: 2009-10-01T03:02:54Z + +[Term] +id: PATO:0002090 +name: adenomatous +def: "A morphology quality inhering in a tumour by virtue of the bearer's exhbiting the morphological characteristics of a glandular epithelial cell." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000051 ! morphology +created_by: george +creation_date: 2009-10-05T11:25:52Z + +[Term] +id: PATO:0002091 +name: subacute +def: "A quality of a single process inhering in a bearer by virtue of the bearer's having an onset and time course between acute and chronic." [PATOC:GVG] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001309 ! duration +created_by: george +creation_date: 2009-10-05T11:31:35Z + +[Term] +id: PATO:0002092 +name: anaplastic +def: "A morphology quality inhering in a neoplastic cell by virtue of the bearer's exhibiting breakdown of cell-cell interaction maintaining tissue architecture, proliferative dysregulation and bizarre modification to nucleus size and shape." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000051 ! morphology +created_by: george +creation_date: 2009-10-05T11:45:53Z + +[Term] +id: PATO:0002093 +name: ballooning +def: "A volume quality inhering in a degenerating cell by virtue of the bearer's exhibiting an increase in volume associated with cytoplasmic abnormalities." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000595 ! increased volume +created_by: george +creation_date: 2009-10-05T12:01:13Z + +[Term] +id: PATO:0002094 +name: basophilic +def: "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for basic dyes under specific ph conditions." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +created_by: george +creation_date: 2009-10-05T12:05:23Z + +[Term] +id: PATO:0002095 +name: obsolete neoplasm disposition +def: "A disposition inhering in a tumour to progress or fail to progress during it's life time." [PATOC:GVG] +subset: attribute_slim +is_obsolete: true +created_by: george +creation_date: 2009-10-05T12:15:02Z + +[Term] +id: PATO:0002096 +name: neoplastic, non-malignant +def: "A disposition inhering in a tumour by virtue of the bearer's disposition not to progress, invade surrounding tissues or metastasize." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +synonym: "benign" RELATED [] +is_a: PATO:0002011 ! neoplastic +disjoint_from: PATO:0002097 ! neoplastic, malignant +disjoint_from: PATO:0002098 ! neoplastic, metastatic +disjoint_from: PATO:0002129 ! neoplastic, invasive +created_by: george +creation_date: 2009-10-05T12:47:14Z + +[Term] +id: PATO:0002097 +name: neoplastic, malignant +def: "A disposition inhering in a tumour by virtue of the bearer's disposition to progress, invade surrounding tissues or metastasize." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0002011 ! neoplastic +disjoint_from: PATO:0002132 ! neoplastic, non-invasive +created_by: george +creation_date: 2009-10-05T12:50:22Z + +[Term] +id: PATO:0002098 +name: neoplastic, metastatic +def: "A disposition inhering in a tumour by virtue of the bearer's disposition to spread and invade distant tissues." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0002011 ! neoplastic +disjoint_from: PATO:0002132 ! neoplastic, non-invasive +created_by: george +creation_date: 2009-10-05T12:54:48Z + +[Term] +id: PATO:0002099 +name: differentiated +def: "A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency +relationship: is_opposite_of PATO:0002100 ! undifferentiated +created_by: george +creation_date: 2009-10-05T12:58:54Z + +[Term] +id: PATO:0002100 +name: undifferentiated +def: "A cellular quality inhering in a bearer by virtue of having not yet acquired a special structure of function." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001397 ! cellular potency +relationship: is_opposite_of PATO:0002099 ! differentiated +created_by: george +creation_date: 2009-10-05T12:59:21Z + +[Term] +id: PATO:0002101 +name: metaplastic +def: "A cellular quality inhering in a bearer by virtue of having changed from one fully differentiated state into another." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "trans-differentiated" RELATED [] +is_a: PATO:0001397 ! cellular potency +created_by: george +creation_date: 2009-10-05T01:09:09Z + +[Term] +id: PATO:0002102 +name: proliferative +def: "A cellular quality inhering in a cell that arises by virtue of whether the bearer exhibits the ability to grow and proliferate in number through cell division." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0001396 ! cellular quality +created_by: george +creation_date: 2009-10-05T01:16:31Z + +[Term] +id: PATO:0002103 +name: infiltrative +def: "A structural quality inhering in a bearer by virtue of the bearer's penetrating or permeating another substance or area." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "infiltrating" EXACT [] +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-10-05T01:27:56Z + +[Term] +id: PATO:0002104 +name: inflamed +def: "A compositional quality inhering in an bearer by virtue of the bearer's infiltration by leukocytes, local edema and accumulation of plasma proteins." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-05T01:37:35Z + +[Term] +id: PATO:0002105 +name: hemorrhagic +def: "A structural quality inhering in a bearer by virtue of the bearer's exhibiting excessive discharge of blood from the blood vessels." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-10-05T01:55:53Z + +[Term] +id: PATO:0002106 +name: poorly differentiated +def: "A cellular quality inhering in a bearer by virtue of its lacking most of the cellular characteristics which would allow it to be fully differentiated." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002099 ! differentiated +created_by: george +creation_date: 2009-10-05T02:53:43Z + +[Term] +id: PATO:0002107 +name: peripheral +def: "A positional quality inhering in a bearer by virtue of the bearer's being at the edge or boundary of a related entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2009-10-05T02:58:16Z + +[Term] +id: PATO:0002108 +name: papillary +def: "A quality inhering in a bearer by virtue of the bearer's resembling small nipple like projection." [PATO:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000623 ! exserted +created_by: george +creation_date: 2009-10-05T03:04:52Z + +[Term] +id: PATO:0002109 +name: caseous +def: "A structural quality inhering in a bearer by virtue of the bearer's resembling cheese." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "cheese-like" EXACT [] +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-10-05T03:09:27Z + +[Term] +id: PATO:0002110 +name: well differentiated +def: "A cellular quality inhering in a bearer by virtue of its having most of the cellular characteristics of the tissue of origin." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002099 ! differentiated +created_by: george +creation_date: 2009-10-05T03:26:29Z + +[Term] +id: PATO:0002111 +name: moderately well differentiated +def: "A cellular quality inhering in a bearer by virtue of its lacking few of the cellular characteristics which would allow it to be fully differentiated." [PATOC:GVG] +subset: cell_quality +subset: mpath_slim +is_a: PATO:0002099 ! differentiated +created_by: george +creation_date: 2009-10-05T03:29:42Z + +[Term] +id: PATO:0002112 +name: perforate +alt_id: PATO:0000649 +def: "A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes." [answers.com:answers.com] +subset: mpath_slim +subset: value_slim +synonym: "permeable" RELATED [] +synonym: "pierced" RELATED [] +is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0001821 ! imperforate +created_by: george +creation_date: 2009-10-05T03:37:05Z + +[Term] +id: PATO:0002113 +name: cribriform +def: "Perforated like a sieve." [merriam-webster:merriam-webster] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002112 ! perforate +created_by: george +creation_date: 2009-10-05T03:38:22Z + +[Term] +id: PATO:0002114 +name: fatty +def: "A composition quality inhering in a bearer by virtue of the bearer's containing excess lipid." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-05T03:47:15Z + +[Term] +id: PATO:0002115 +name: fibrinoid +def: "A composition quality inhering in a bearer by virtue of the bearer's containing fibrin." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-05T04:01:01Z + +[Term] +id: PATO:0002116 +name: fibrinopurulent +def: "A composition quality inhering in exudate by virtue of the bearer's containing fibrin." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-05T04:03:03Z + +[Term] +id: PATO:0002117 +name: glandular +def: "A morphology quality inhering in a bearer by virtue of the bearer's exhbiting the morphological characteristics of a gland." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000051 ! morphology +created_by: george +creation_date: 2009-10-05T04:11:30Z + +[Term] +id: PATO:0002118 +name: multiple +def: "A quality inhering in a bearer by virtue of the bearer's being present in more than two copies." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000470 ! increased amount +created_by: george +creation_date: 2009-10-06T03:28:38Z + +[Term] +id: PATO:0002119 +name: hydropic +def: "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of intracellular fluid." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-06T03:45:58Z + +[Term] +id: PATO:0002120 +name: suppurative +def: "A quality inhering a bearer by virtue of the bearer's ability to generate pus." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "purulent" RELATED [] +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-06T03:56:00Z + +[Term] +id: PATO:0002121 +name: trabecular +def: "A spatial pattern inhering in a bearer by virtue of the bearer's structureresembling an irregular meshwork with cross-linking struts." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000330 ! irregular spatial pattern +created_by: george +creation_date: 2009-10-06T03:57:55Z + +[Term] +id: PATO:0002122 +name: mixed +def: "A composition quality inhering in a bearer by virtue of the bearer's being composed of more than one identifiable entities." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-06T04:29:17Z + +[Term] +id: PATO:0002123 +name: minimal +def: "Being smallest in amount, extent or degree." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000467 ! present +created_by: george +creation_date: 2009-10-06T04:33:48Z + +[Term] +id: PATO:0002124 +name: laminar +def: "A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-10-06T04:37:14Z + +[Term] +id: PATO:0002125 +name: nodular +def: "A quality inhering in a bearer by virtue of the bearer's consisting a knot-like mass." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2009-10-06T04:40:06Z + +[Term] +id: PATO:0002126 +name: osseous +def: "A quality inhering in a bearer by virtue of the bearer's containing bone." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "bony" EXACT [] +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-06T04:42:11Z + +[Term] +id: PATO:0002127 +name: scirrhous +def: "A hardness quality of being rigid and resistant to pressure and fibrous." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0000386 ! hard +created_by: george +creation_date: 2009-10-06T04:49:30Z + +[Term] +id: PATO:0002128 +name: serous +def: "A quality inhering a bearer by virtue of the bearer's containing or resembling serum." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-06T04:51:16Z + +[Term] +id: PATO:0002129 +name: neoplastic, invasive +def: "A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0002011 ! neoplastic +disjoint_from: PATO:0002132 ! neoplastic, non-invasive +created_by: george +creation_date: 2009-10-06T05:02:45Z + +[Term] +id: PATO:0002130 +name: neoplastic, deeply invasive +def: "A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues to a large extend." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002129 ! neoplastic, invasive +created_by: george +creation_date: 2009-10-06T05:03:13Z + +[Term] +id: PATO:0002131 +name: abduction +def: "A displaced angular placement quality inhering in a body part by virtue of the bearer's movement away from the medial plane of the body." [wikipedia:wikipedia] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0002168 ! displaced to +created_by: george +creation_date: 2009-10-13T06:38:53Z + +[Term] +id: PATO:0002132 +name: neoplastic, non-invasive +def: "A disposition inhering in a tumour by virtue of the bearer's disposition not to invade surrounding tissues." [PATOC:GVG] +subset: disposition_slim +subset: mpath_slim +subset: value_slim +is_a: PATO:0002011 ! neoplastic +created_by: george +creation_date: 2009-10-06T05:04:18Z + +[Term] +id: PATO:0002133 +name: adduction +def: "A displaced angular placement quality inhering in a body part by virtue of the bearer's movement closer the medial plane of the body." [wikipedia:wikipedia] +comment: This term is also used in reference to the operation of the muscle in anatomy or musculature. +subset: attribute_slim +subset: relational_slim +is_a: PATO:0002168 ! displaced to +created_by: george +creation_date: 2009-10-13T06:41:39Z + +[Term] +id: PATO:0002134 +name: fibrillary +def: "A composition quaity inhering in a bearer by virtue of the bearer's containing of or pertaining to fibrils, or nanoscale fibers." [wikipedia:wikipedia] +subset: value_slim +synonym: "fibrillate" EXACT [] +is_a: PATO:0000025 ! composition +created_by: george +creation_date: 2009-10-26T12:53:47Z + +[Term] +id: PATO:0002135 +name: delayed closure +def: "A duration quality of a process inhering in a bearer by virtue of the bearer's delay to complete the closure of the opening of an anatomical entity." [PATOC:GVG] +is_a: PATO:0000502 ! delayed +created_by: george +creation_date: 2009-10-26T01:03:17Z + +[Term] +id: PATO:0002136 +name: radiopacity +def: "A quality inhering in a bearer by virtue of the bearer's relative inability of electromagnetism to pass through a particular material, particularly X-rays." [Wikipedia:Wikipedia] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0001291 ! electromagnetic (EM) radiation quality +created_by: george +creation_date: 2009-10-26T01:14:38Z + +[Term] +id: PATO:0002137 +name: radiopaque +def: "A readiopacity quality inhering in a bearer by virtue of the bearer's prevention of the passage of electromagnetic radiation." [Wikipedia:Wikipedia] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002136 ! radiopacity +created_by: george +creation_date: 2009-10-26T01:16:08Z + +[Term] +id: PATO:0002138 +name: edibility +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be eaten." [PATOC:VO] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +synonym: "edibleness" EXACT [] +is_a: PATO:0001018 ! physical quality +created_by: george +creation_date: 2009-10-26T01:20:24Z + +[Term] +id: PATO:0002139 +name: edible +def: "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as food." [PATOC:VO] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002138 ! edibility +disjoint_from: PATO:0002140 ! inedible +relationship: is_opposite_of PATO:0002140 ! inedible +created_by: george +creation_date: 2009-10-26T01:21:34Z + +[Term] +id: PATO:0002140 +name: inedible +def: "A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food." [PATOC:VO] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002138 ! edibility +relationship: is_opposite_of PATO:0002139 ! edible +created_by: george +creation_date: 2009-10-26T01:22:27Z + +[Term] +id: PATO:0002141 +name: irregular density +def: "A density quality which lacks pattern." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001019 ! mass density +created_by: george +creation_date: 2009-10-28T01:57:53Z + +[Term] +id: PATO:0002142 +name: bracket +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2009-10-28T03:14:54Z + +[Term] +id: PATO:0002143 +name: sloped downward +subset: value_slim +is_a: PATO:0001481 ! sloped +created_by: george +creation_date: 2009-10-30T02:18:39Z + +[Term] +id: PATO:0002144 +name: increased radiopacity +def: "A radiopacity that is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002136 ! radiopacity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002136 ! radiopacity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002145 ! decreased radiopacity +created_by: george +creation_date: 2009-10-30T03:30:39Z + +[Term] +id: PATO:0002145 +name: decreased radiopacity +def: "A radiopacity that is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002136 ! radiopacity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002136 ! radiopacity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002144 ! increased radiopacity +created_by: george +creation_date: 2009-10-30T03:31:31Z + +[Term] +id: PATO:0002146 +name: virulence +def: "A quality inhering in a bearer by virtue of the severity of infectious disease caused by the bearer in a target organism." [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0001-8941-3984] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001995 ! organismal quality +created_by: george +creation_date: 2009-10-30T05:04:06Z + +[Term] +id: PATO:0002147 +name: reduced virulence +def: "A virulence that is relatively low." [PATOC:GVG] +subset: value_slim +synonym: "attenuated" EXACT [] +is_a: PATO:0002146 ! virulence +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002146 ! virulence +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002148 ! increased virulence +created_by: george +creation_date: 2009-10-30T05:05:02Z + +[Term] +id: PATO:0002148 +name: increased virulence +def: "A virulence that is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002146 ! virulence +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002146 ! virulence +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002147 ! reduced virulence +created_by: george +creation_date: 2009-10-30T05:13:10Z + +[Term] +id: PATO:0002149 +name: ivory +def: "A quality inhering in a bearer by virtue of the bearer exhibiting increased density resulting in exhibiting increased degree of radiopacity (in X-rays)." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001788 ! increased mass density +created_by: george +creation_date: 2009-11-03T02:59:08Z + +[Term] +id: PATO:0002150 +name: splayed caudal +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the part of the body from which the tail arises." [PATOC:GVG] +subset: value_slim +synonym: "splayed inferior (human torso)" EXACT [] +synonym: "splayed posterior" EXACT [] +is_a: PATO:0001785 ! splayed +created_by: george +creation_date: 2009-11-06T01:13:10Z + +[Term] +id: PATO:0002151 +name: splayed dorsal +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the back or upper surface of an organism." [PATOC:GVG] +subset: value_slim +synonym: "splayed posterior (human torso)" RELATED [] +is_a: PATO:0001785 ! splayed +created_by: george +creation_date: 2009-11-06T01:14:09Z + +[Term] +id: PATO:0002152 +name: splayed lateral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001785 ! splayed +created_by: george +creation_date: 2009-11-06T01:14:22Z + +[Term] +id: PATO:0002153 +name: splayed rostral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the front of an organism." [PATOC:GVG] +subset: value_slim +synonym: "splayed anterior" EXACT [] +synonym: "splayed superior (human torso)" EXACT [] +is_a: PATO:0001785 ! splayed +created_by: george +creation_date: 2009-11-06T01:14:31Z + +[Term] +id: PATO:0002154 +name: splayed ventral +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the abdomen of an organism." [PATOC:GVG] +subset: value_slim +synonym: "splayed anterior (human torso)" EXACT [] +synonym: "splayed inferior (human head)" EXACT [] +is_a: PATO:0001785 ! splayed +created_by: george +creation_date: 2009-11-06T01:14:42Z + +[Term] +id: PATO:0002155 +name: medially rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the middle of an organism." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "internally rotated" EXACT [] +is_a: PATO:0001599 ! rotated +created_by: george +creation_date: 2009-11-06T02:23:28Z + +[Term] +id: PATO:0002156 +name: laterally rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the side of an organism." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "externally rotated" EXACT [] +is_a: PATO:0001599 ! rotated +created_by: george +creation_date: 2009-11-06T02:25:10Z + +[Term] +id: PATO:0002157 +name: partially dislocated +alt_id: PATO:0002160 +def: "A positional quality inhering in a bearer by virtue of the bearer's being slightly out of its usual or proper place, or position." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "partial dislocated towards" EXACT [] +synonym: "subluxation" EXACT [] +synonym: "suluxated towards" EXACT [] +is_a: PATO:0001852 ! dislocated +created_by: george +creation_date: 2009-11-06T03:34:15Z + +[Term] +id: PATO:0002161 +name: bicornuate +def: "Having two horns or horn-shaped branches." [mondofacto:mondofacto] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: george +creation_date: 2009-11-11T02:37:52Z + +[Term] +id: PATO:0002162 +name: high-arched +def: "A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch of an increased apical height." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001594 ! arched +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001594 ! arched +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +created_by: george +creation_date: 2009-11-26T02:34:06Z + +[Term] +id: PATO:0002163 +name: herniated into +def: "A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it into the surface or boundary of another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001645 ! protruding into +created_by: george +creation_date: 2009-11-26T04:50:43Z + +[Term] +id: PATO:0002164 +name: curved medial +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the middle." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: george +creation_date: 2009-12-02T10:06:21Z + +[Term] +id: PATO:0002165 +name: drooping +def: "To bent or hang downwards." [thefreedictionary.:thefreedictionary.] +subset: value_slim +synonym: "sagging" EXACT [] +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2009-12-02T03:32:55Z + +[Term] +id: PATO:0002166 +name: premature closure +def: "A duration quality of a process inhering in a bearer by virtue of the bearer's premature completion of the closure of the opening of an anatomical entity." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000694 ! premature +created_by: george +creation_date: 2009-12-02T04:10:10Z + +[Term] +id: PATO:0002167 +name: herniated out of +def: "A protruding quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded out of the surface or boundary of another entity." [PATOC:GVG] +subset: mpath_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001646 ! protruding out of +created_by: george +creation_date: 2009-12-02T05:19:32Z + +[Term] +id: PATO:0002168 +name: displaced to +def: "An angular placement quality inhering in a bearer by virtue of the bearer being changed in position in relation to another entity." [PATOC:GVG] +subset: relational_slim +synonym: "mislocalised to" RELATED [] +is_a: PATO:0000133 ! orientation +created_by: george +creation_date: 2010-01-14T04:45:18Z + +[Term] +id: PATO:0002169 +name: split medially +def: "A shape quality inhering in a bearer by virtue of the bearer's being split along the median axis." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001786 ! split +created_by: george +creation_date: 2010-02-03T04:37:15Z + +[Term] +id: PATO:0002170 +name: split laterally +def: "A shape quality inhering in a bearer by virtue of the bearer's being split asymmetrically on one side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001786 ! split +created_by: george +creation_date: 2010-02-03T04:37:40Z + +[Term] +id: PATO:0002171 +name: split bilaterally +def: "A shape quality inhering in a bearer by virtue of the bearer's being split on two side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001786 ! split +created_by: george +creation_date: 2010-02-03T04:37:53Z + +[Term] +id: PATO:0002172 +name: split radially +def: "A shape quality inhering in a bearer by virtue of the bearer's being split along the radial axis." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001786 ! split +created_by: george +creation_date: 2010-02-03T04:42:35Z + +[Term] +id: PATO:0002173 +name: misaligned towards +def: "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning towards an additional entity." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0001654 ! misaligned with +created_by: George Gkoutos +creation_date: 2010-02-22T03:18:17Z + +[Term] +id: PATO:0002174 +name: misaligned away from +def: "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning away from an additional entity." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0001654 ! misaligned with +created_by: George Gkoutos +creation_date: 2010-02-22T03:18:48Z + +[Term] +id: PATO:0002175 +name: deviation +def: "A spatial quality inhering in a bearer by virtue of the bearer's changed direction of position towards another entity." [PATO:GVG] +subset: attribute_slim +is_a: PATO:0000060 ! spatial pattern +created_by: George Gkoutos +creation_date: 2010-02-25T09:14:42Z + +[Term] +id: PATO:0002176 +name: deviation towards the lateral side +def: "A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the side." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002175 ! deviation +created_by: George Gkoutos +creation_date: 2010-02-25T09:16:04Z + +[Term] +id: PATO:0002177 +name: deviation towards the medial side +def: "A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the middle." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002175 ! deviation +created_by: George Gkoutos +creation_date: 2010-02-25T09:16:56Z + +[Term] +id: PATO:0002178 +name: mislocalised radially +def: "A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position around a central point or axis." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000628 ! mislocalised +created_by: George Gkoutos +creation_date: 2010-02-25T11:24:58Z + +[Term] +id: PATO:0002179 +name: mislocalised proximally +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards to point of attachment or origin." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000628 ! mislocalised +created_by: George Gkoutos +creation_date: 2010-02-25T12:34:48Z + +[Term] +id: PATO:0002180 +name: straight +def: "A shape quality inhering in a bearer by virtue of the bearer's being free of curves, bends, or angles." [merriam-webster:merriam-webster] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2010-02-28T08:54:59Z + +[Term] +id: PATO:0002181 +name: displaced +def: "A positional quality inhering in a bearer by virtue the bearer's being changed in position." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000140 ! position +created_by: George Gkoutos +creation_date: 2010-03-01T02:56:33Z + +[Term] +id: PATO:0002182 +name: molecular quality +alt_id: PATO:0002061 +def: "A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc." [PATOC:GVG] +synonym: "relational molecular quality" EXACT [] +is_a: PATO:0001241 ! physical object quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:18:15Z + +[Term] +id: PATO:0002183 +name: cyclicity +def: "A molecular quality that inheres in a molecular entity by virtue of whether that there is a presence of cycles in the connection of the atoms within the molecular entity." [PATOC:JH] +subset: value_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:19:46Z + +[Term] +id: PATO:0002184 +name: cyclic cyclicity +def: "Cyclic cyclicity inheres in a molecule when the atoms of the molecule do contain at least one cycle in the atom-atom connection paths (through bonds)." [PATOC:JH] +subset: value_slim +is_a: PATO:0002183 ! cyclicity +created_by: George Gkoutos +creation_date: 2010-03-10T03:20:54Z + +[Term] +id: PATO:0002185 +name: acyclic cyclicity +def: "Acyclic cyclicity inheres in a molecule when the atoms within the molecule do not contain at least one cycle in the atom-atom connection paths (through the bonds)." [PATOC:JH] +subset: value_slim +is_a: PATO:0002183 ! cyclicity +created_by: George Gkoutos +creation_date: 2010-03-10T03:21:39Z + +[Term] +id: PATO:0002186 +name: polarity +def: "A molecular quality that inheres in a molecular entity by virtue of whether or not the molecular entity has a separation of electric charge which leads to the molecule having an electric dipole." [PATOC:JH] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:22:04Z + +[Term] +id: PATO:0002187 +name: polar polarity +def: "Polar polarity is a quality that inheres in a molecular entity when the molecular entity is polar, i.e. does possess an electric dipole." [PATOC:JH] +subset: value_slim +is_a: PATO:0002186 ! polarity +disjoint_from: PATO:0002188 ! nonpolar polarity +created_by: George Gkoutos +creation_date: 2010-03-10T03:22:49Z + +[Term] +id: PATO:0002188 +name: nonpolar polarity +def: "A molecular quality which inheres in a molecular entity when the molecular entity does not possess an electrical dipole." [PATOC:JH] +subset: value_slim +is_a: PATO:0002186 ! polarity +created_by: George Gkoutos +creation_date: 2010-03-10T03:24:01Z + +[Term] +id: PATO:0002189 +name: electric polarizability +def: "The ease of distortion of the electron cloud of a molecular entity by an electric field." [PATOC:JH] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:24:47Z + +[Term] +id: PATO:0002190 +name: aromaticity +def: "A molecular quality that inheres in a molecular entity by virtue of the presence of a conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone." [PATOC:JH] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:25:27Z + +[Term] +id: PATO:0002191 +name: aromatic +def: "A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone." [PATOC:JH] +subset: value_slim +is_a: PATO:0002190 ! aromaticity +disjoint_from: PATO:0002192 ! non-aromatic +relationship: is_opposite_of PATO:0002192 ! non-aromatic +created_by: George Gkoutos +creation_date: 2010-03-10T03:25:59Z + +[Term] +id: PATO:0002192 +name: non-aromatic +def: "A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic." [PATOC:JH] +subset: value_slim +is_a: PATO:0002190 ! aromaticity +relationship: is_opposite_of PATO:0002191 ! aromatic +created_by: George Gkoutos +creation_date: 2010-03-10T03:26:41Z + +[Term] +id: PATO:0002193 +name: electric charge +def: "A molecular quality that inheres in a molecular entity by virtue of the overall electric charge of the molecule, which is due to a comparison between the total number of electrons and the total number of protons." [PATOC:JH] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:28:54Z + +[Term] +id: PATO:0002194 +name: neutral charge +def: "A quality which inheres in a molecular entity by virtue of the molecular entity possessing the same amount of electrons overall as protons, thus having an overall neutral charge." [PATOC:JH] +subset: value_slim +is_a: PATO:0002193 ! electric charge +disjoint_from: PATO:0002195 ! positive charge +disjoint_from: PATO:0002196 ! negative charge +created_by: George Gkoutos +creation_date: 2010-03-10T03:29:37Z + +[Term] +id: PATO:0002195 +name: positive charge +def: "A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge." [PATOC:JH] +subset: value_slim +is_a: PATO:0002193 ! electric charge +disjoint_from: PATO:0002196 ! negative charge +relationship: is_opposite_of PATO:0002196 ! negative charge +created_by: George Gkoutos +creation_date: 2010-03-10T03:30:06Z + +[Term] +id: PATO:0002196 +name: negative charge +def: "A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge." [PATOC:JH] +subset: value_slim +is_a: PATO:0002193 ! electric charge +relationship: is_opposite_of PATO:0002195 ! positive charge +created_by: George Gkoutos +creation_date: 2010-03-10T03:30:39Z + +[Term] +id: PATO:0002197 +name: electronegativity +def: "A quality that describes the power of an atom to attract electrons to itself ." [PATOC:JH] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-10T03:31:15Z + +[Term] +id: PATO:0002198 +name: quality of a substance +def: "A quality inhering in a bearer by virtue of its constitution." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality +created_by: George Gkoutos +creation_date: 2010-03-15T04:35:27Z + +[Term] +id: PATO:0002199 +name: meltability +def: "A quality which inheres in a substance by virtue of the ease with which the substance can be changed from a solid to a liquid state especially by the application of heat." [PATOC:JH] +subset: attribute_slim +is_a: PATO:0002198 ! quality of a substance +created_by: George Gkoutos +creation_date: 2010-03-15T04:36:57Z + +[Term] +id: PATO:0002200 +name: vaporizability +def: "A quality which inheres in a substance by virtue of the ease with which the substance can be changed into a gaseous state." [PATOC:JH] +subset: attribute_slim +is_a: PATO:0002198 ! quality of a substance +created_by: George Gkoutos +creation_date: 2010-03-15T04:38:02Z + +[Term] +id: PATO:0002201 +name: handedness +def: "A behavioral quality inhering ina bearer by virtue of the bearer's unequal distribution of fine motor skill between its left and right hands or feet." [birnlex:2178] +comment: Adapted from Wikipedia and the birnlex term that is dbxref'd. Added on behalf of OBI at March 2010 workshop. +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000186 ! behavioral quality +created_by: haendel +creation_date: 2010-03-22T05:48:33Z + +[Term] +id: PATO:0002202 +name: left handedness +def: "Handedness where the organism preferentially uses the left hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot." [birnlex:2038] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002201 ! handedness +created_by: haendel +creation_date: 2010-03-22T05:49:06Z + +[Term] +id: PATO:0002203 +name: right handedness +def: "Handedness where the organism preferentially uses the right hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot." [birnlex:2184] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002201 ! handedness +created_by: haendel +creation_date: 2010-03-22T05:49:19Z + +[Term] +id: PATO:0002204 +name: ambidextrous handedness +def: "Handedness where the organism exhibits no overall dominance in the use of right or left hand or foot in the performance of tasks that require one hand or foot or a dominant hand or foot." [birnlex:2042] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002201 ! handedness +created_by: haendel +creation_date: 2010-03-22T05:49:30Z + +[Term] +id: PATO:0002205 +name: capacitance +def: "A quality inhering in a bearer by virtue of the bearer's ability to hold an electrical charge." [Wikipedia:Wikipedia] +comment: Capacitance is also a measure of the amount of electrical energy stored (or separated) for a given electric potential. +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: George Gkoutos +creation_date: 2010-03-25T09:42:51Z + +[Term] +id: PATO:0002206 +name: neonatal +def: "A maturity quality inhering to a bearer by virtue of the bearer's being at the point or short after birth." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000261 ! maturity +created_by: George Gkoutos +creation_date: 2010-05-07T12:11:47Z + +[Term] +id: PATO:0002207 +name: insertion depth +def: "A quality that is the distance between the end of the inserted object and the surface of the object into which it penetrates." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +is_a: PATO:0000040 ! distance +created_by: George Gkoutos +creation_date: 2010-05-14T11:40:24Z + +[Term] +id: PATO:0002208 +name: spoon-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a spoon." [thefreedictionary:http\://www.thefreedictionary.com/spoon-shaped] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: george +creation_date: 2010-07-08T12:13:12Z + +[Term] +id: PATO:0002209 +name: incisiform +def: "A shape quality inhering in a bearer by virtue of the bearer's having the shape of an incisor tooth." [thefreedictionary:http\://www.thefreedictionary.com/incisiform] +subset: value_slim +is_a: PATO:0001419 ! sharp +created_by: george +creation_date: 2010-07-08T12:16:04Z + +[Term] +id: PATO:0002210 +name: bulbous +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a teardrop." [PATOC:GVG] +subset: value_slim +synonym: "bulb-shaped" EXACT [] +synonym: "bulblike" EXACT [] +synonym: "swollen" RELATED [] +is_a: PATO:0001865 ! spheroid +created_by: george +creation_date: 2010-07-08T12:19:08Z + +[Term] +id: PATO:0002211 +name: recurved +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or inward." [merriam-webster:http\://www.merriam-webster.com/dictionary/recurved] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: george +creation_date: 2010-07-08T12:26:45Z + +[Term] +id: PATO:0002212 +name: slender +def: "A shape quality inhering in a bearer by virtue of the bearer's being small or narrow in circumference or width in proportion to length or height." [merriam-webster:http\://www.merriam-webster.com/dictionary/slender] +subset: value_slim +synonym: "gracile" RELATED [] +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2010-07-08T01:32:26Z + +[Term] +id: PATO:0002213 +name: obclavate +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate." [PATOC:GVG] +subset: cell_quality +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: george +creation_date: 2010-07-08T01:47:09Z + +[Term] +id: PATO:0002214 +name: bilobed +def: "A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having two lobes." [thefreedictionary:http\://www.thefreedictionary.com/bilobed] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001979 ! lobed +created_by: george +creation_date: 2010-07-08T01:54:08Z + +[Term] +id: PATO:0002215 +name: falciform +def: "A shape quality inhering in a bearer by virtue of the bearer's having the shape of a scythe or sickle." [merriam-webster:http\://www.merriam-webster.com/dictionary/falciform] +subset: value_slim +synonym: "falcate" EXACT [] +synonym: "hooked" EXACT [] +synonym: "scythe-shaped" EXACT [] +synonym: "sickle-shaped" EXACT [] +synonym: "unciform" EXACT [] +synonym: "uncinate" EXACT [] +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2010-07-08T01:57:46Z + +[Term] +id: PATO:0002216 +name: ubiquinated +def: "A molecular quality that pertains to the post-translational modification of a protein by the covalent attachment of one or more ubiquitin monomer." [neurolex:http\://neurolex.org/] +subset: value_slim +synonym: "Ubiquitylation" RELATED [] +is_a: PATO:0002182 ! molecular quality +created_by: george +creation_date: 2010-07-08T02:00:37Z + +[Term] +id: PATO:0002217 +name: nitrated +def: "A molecular quality inhering in a bearer by virtue of the bearer's being combined, or impregnated, with nitric acid, or some of its compounds." [neurolex:http\://neurolex.org/wiki/Category\:Nitrated_Molecular_Quality] +subset: value_slim +is_a: PATO:0002182 ! molecular quality +created_by: george +creation_date: 2010-07-08T02:04:03Z + +[Term] +id: PATO:0002218 +name: demyelinated +def: "A quality inhering in a bearer by virtue of the bearer's loss of myelin sheath." [thefreedictionary:http\://www.thefreedictionary.com/demyelinated] +comment: For example loss of myelin sheath from a normally myelinated axon or dendrite. +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2010-07-08T02:08:06Z + +[Term] +id: PATO:0002219 +name: fan-shaped +def: "A quality inhering in a bearer that is shaped in the form of a fan." [thefreedictionary:http\://www.thefreedictionary.com/fan-shaped] +subset: value_slim +synonym: "fan-like" EXACT [] +is_a: PATO:0002006 ! 2-D shape +created_by: george +creation_date: 2010-07-09T01:43:42Z + +[Term] +id: PATO:0002220 +name: phosphorylated +def: "A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group." [wikipedia:en.wikipedia.org/wiki/Phosphorylated] +subset: value_slim +is_a: PATO:0002262 ! phosphorylation +disjoint_from: PATO:0002263 ! dephosphorylated +relationship: is_opposite_of PATO:0002263 ! dephosphorylated +created_by: george +creation_date: 2010-07-09T01:50:14Z + +[Term] +id: PATO:0002221 +name: increased phosphorylation +def: "A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups." [Wikipedia:http\://en.wiktionary.org/wiki/hyperphosphorylated] +subset: value_slim +synonym: "hyperphosphorylated" EXACT [] +is_a: PATO:0002220 ! phosphorylated +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002220 ! phosphorylated +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002222 ! decreased phosphorylation +created_by: george +creation_date: 2010-07-09T01:51:52Z + +[Term] +id: PATO:0002222 +name: decreased phosphorylation +def: "A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully." [Wikipedia:http\://en.wiktionary.org/wiki/hypophosphorylated] +subset: value_slim +synonym: "hypophosporylated" EXACT [] +is_a: PATO:0002220 ! phosphorylated +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002220 ! phosphorylated +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002221 ! increased phosphorylation +created_by: george +creation_date: 2010-07-09T01:54:22Z + +[Term] +id: PATO:0002223 +name: oxidized +def: "A quality inhering in a bearer by virtue of the bearer's having reacted with oxygen, or been modified by oxidation (the reaction in which the atoms of an element lose electrons and the valence of the element increases)." [Wikipedia:http\://en.wiktionary.org/wiki/oxidized] +subset: value_slim +is_a: PATO:0002182 ! molecular quality +created_by: george +creation_date: 2010-07-09T01:59:35Z + +[Term] +id: PATO:0002224 +name: V-shaped +def: "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter V." [PATOC:JE] +subset: value_slim +is_a: PATO:0001977 ! angular +created_by: george +creation_date: 2010-07-13T04:12:13Z + +[Term] +id: PATO:0002225 +name: L-shaped +def: "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter L." [PATOC:JE] +subset: value_slim +is_a: PATO:0001977 ! angular +created_by: george +creation_date: 2010-07-13T04:14:59Z + +[Term] +id: PATO:0002226 +name: subcylindrical +def: "A cylindrical shape quality inhering in a bearer by virtue of the bearer's being imperfectly cylindrical or approximately cylindrical." [url:http\://www.thefreedictionary.com/Subcylindrical] +subset: value_slim +is_a: PATO:0001873 ! cylindrical +created_by: george +creation_date: 2010-07-13T04:22:30Z + +[Term] +id: PATO:0002227 +name: cup-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a cup." [url:http\://www.thefreedictionary.com/cup-shaped] +subset: value_slim +synonym: "cup-like" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape +created_by: george +creation_date: 2010-07-13T04:29:32Z + +[Term] +id: PATO:0002228 +name: acuminate +def: "A tapered shape quality inhering in a bearer by virtue of the bearer's tapering gradually to a sharp point." [url:http\://www.thefreedictionary.com/acuminate] +subset: value_slim +is_a: PATO:0001500 ! tapered +created_by: george +creation_date: 2010-07-15T09:03:18Z + +[Term] +id: PATO:0002229 +name: subrectangular +def: "A quadrangular shape quality inhering in a bearer by virtue of the bearer's being approximately rectangular." [url:http\://dictionary.reference.com/browse/subrectangular?qsrc=2446&o=100074] +subset: value_slim +is_a: PATO:0001988 ! quadrangular +created_by: george +creation_date: 2010-07-19T12:18:57Z + +[Term] +id: PATO:0002230 +name: subtriangular +def: "A triangular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, triangular." [url:http\://www.thefreedictionary.com/Subtriangular] +subset: value_slim +is_a: PATO:0001875 ! triangular +created_by: george +creation_date: 2010-07-19T12:20:59Z + +[Term] +id: PATO:0002231 +name: multifid +def: "A split shape quality inhering in a bearer by virtue of the bearer's having or being divided into many lobes or similar segments." [url:http\://www.thefreedictionary.com/multifid] +subset: value_slim +is_a: PATO:0001786 ! split +created_by: george +creation_date: 2010-07-19T12:23:02Z + +[Term] +id: PATO:0002232 +name: semicircular +def: "A 2-D shape quality inhering in a bearer by virtue of the bearer's having shape or form of half a circle." [url:http\://www.thefreedictionary.com/semicircle] +subset: value_slim +synonym: "half circle" EXACT [] +synonym: "semicircle" EXACT [] +is_a: PATO:0002006 ! 2-D shape +created_by: george +creation_date: 2010-07-19T01:02:27Z + +[Term] +id: PATO:0002233 +name: far from +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located far (not close to) in space in relation to another entity." [PATOC:PM] +subset: relational_slim +subset: value_slim +synonym: "distant from" EXACT [] +synonym: "remote from" EXACT [] +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2010-07-19T02:43:53Z + +[Term] +id: PATO:0002234 +name: emarginate +def: "A notched shape quality inhering in a bearer by virtue of the bearer's having a notched tip or edge." [url:http\://www.thefreedictionary.com/emarginate] +subset: value_slim +is_a: PATO:0001495 ! notched +created_by: george +creation_date: 2010-07-19T04:25:58Z + +[Term] +id: PATO:0002235 +name: blade-like +def: "A tapered shape quality inhering in a bearer by virtue of the bearer's being flat, slender, and tapering to a point." [PATOC:JE] +subset: value_slim +synonym: "blade-shaped" EXACT [] +synonym: "ensiform" EXACT [] +synonym: "sword-like" EXACT [] +synonym: "sword-shaped" EXACT [] +is_a: PATO:0001500 ! tapered +created_by: george +creation_date: 2010-07-19T04:29:05Z + +[Term] +id: PATO:0002236 +name: aliform +def: "Shape quality inhering in a bearer by virtue of the bearer's being shaped like a wing." [url:http\://www.thefreedictionary.com/aliform] +subset: value_slim +synonym: "wing-shaped" EXACT [] +is_a: PATO:0002006 ! 2-D shape +created_by: george +creation_date: 2010-07-23T02:19:14Z + +[Term] +id: PATO:0002237 +name: retrorse +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or downward." [url:http\://www.thefreedictionary.com/retrorse] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: george +creation_date: 2010-07-23T02:22:09Z + +[Term] +id: PATO:0002238 +name: antrorse +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved forward or upward." [url:http\://www.thefreedictionary.com/antrorse] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: george +creation_date: 2010-07-23T02:22:56Z + +[Term] +id: PATO:0002239 +name: hourglass-shaped +def: "A concave 3-D shape that inheres in the bearer by virtue of the bearer's nearly) symmetric shape wide at its ends and narrow in the middle, resembling the figure of number 8." [url:http\://en.wikipedia.org/wiki/Hourglass-shaped] +subset: value_slim +synonym: "figure 8 shaped" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape +created_by: george +creation_date: 2010-07-23T02:25:24Z + +[Term] +id: PATO:0002240 +name: teardrop-shaped +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop." [url:wordnetweb.princeton.edu/perl/webwn] +subset: value_slim +synonym: "drop shaped" EXACT [] +is_a: PATO:0002007 ! convex 3-D shape +created_by: george +creation_date: 2010-07-23T02:31:11Z + +[Term] +id: PATO:0002241 +name: trilobed +def: "A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having three lobes." [url:http\://www.thefreedictionary.com/trilobed] +subset: value_slim +is_a: PATO:0001979 ! lobed +created_by: george +creation_date: 2010-07-28T12:57:46Z + +[Term] +id: PATO:0002242 +name: velocity +def: "A physical quality inhering in a bearer by virtue of the bearer's rate of change of the position." [url:http\://en.wikipedia.org/wiki/Velocity] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001906 ! movement quality +created_by: george +creation_date: 2010-07-28T02:52:48Z + +[Term] +id: PATO:0002243 +name: fluid flow rate +def: "A physical quality inhering in a fluid (liquid or gas) by virtue of the amount of fluid which passes through a given surface per unit time." [url:http\://en.wikipedia.org/wiki/Volumetric_flow_rate] +subset: attribute_slim +subset: scalar_slim +synonym: "volume flow rate" EXACT [] +synonym: "volumetric flow rate" EXACT [] +is_a: PATO:0001574 ! flow rate +created_by: george +creation_date: 2010-07-28T03:00:20Z + +[Term] +id: PATO:0002244 +name: mass flow rate +def: "A flow rate quality inhering in a substance by virtue of the mass of substance which passes through a given surface per unit time." [url:http\://en.wikipedia.org/wiki/Mass_flow_rate] +subset: attribute_slim +is_a: PATO:0001574 ! flow rate +created_by: george +creation_date: 2010-07-28T03:02:03Z + +[Term] +id: PATO:0002245 +name: increased force +def: "A force which relative high." [PATOC:GVG] +subset: value_slim +synonym: "increased force amplitude" EXACT [] +is_a: PATO:0001035 ! force +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001035 ! force +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002246 ! decreased force +created_by: george +creation_date: 2010-08-04T11:12:20Z + +[Term] +id: PATO:0002246 +name: decreased force +def: "A force which is relative low." [PATOC:GVG] +subset: value_slim +synonym: "decreased force amplitude" EXACT [] +is_a: PATO:0001035 ! force +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001035 ! force +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002245 ! increased force +created_by: george +creation_date: 2010-08-04T11:13:13Z + +[Term] +id: PATO:0002247 +name: degree of pigmentation +def: "A quality inhering in a bearer by virtue of the bearer's having or lacking of substances produced by living organisms that have a color resulting from selective color absorption." [url:http\://en.wikipedia.org/wiki/Biological_pigment] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000141 ! structure +relationship: correlates_with PATO:0000014 ! color +created_by: george +creation_date: 2010-08-09T04:14:00Z + +[Term] +id: PATO:0002248 +name: pigmented +def: "A degree of pigmentation quality inhering in a bearer by virtue of the bearer's having substances produced by living organisms that have a color resulting from selective color absorption." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002247 ! degree of pigmentation +disjoint_from: PATO:0002249 ! unpigmented +relationship: is_opposite_of PATO:0002249 ! unpigmented +created_by: george +creation_date: 2010-08-09T04:16:49Z + +[Term] +id: PATO:0002249 +name: unpigmented +def: "A degree of pigmentation quality inhering in a bearer by virtue of the bearer's lacking substances produced by living organisms that have a color resulting from selective color absorption." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "depigmented" EXACT [] +is_a: PATO:0002247 ! degree of pigmentation +relationship: is_opposite_of PATO:0002248 ! pigmented +created_by: george +creation_date: 2010-08-09T04:17:04Z + +[Term] +id: PATO:0002250 +name: increased pigmentation +def: "A degree of pigmentation quality that is relatively high." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "hyperpigmented" EXACT [] +is_a: PATO:0002248 ! pigmented +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002248 ! pigmented +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002251 ! decreased pigmentation +created_by: george +creation_date: 2010-08-09T04:17:19Z + +[Term] +id: PATO:0002251 +name: decreased pigmentation +def: "A degree of pigmentation quality that is relative low." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +synonym: "hypopigmented" EXACT [] +is_a: PATO:0002248 ! pigmented +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002248 ! pigmented +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002250 ! increased pigmentation +created_by: george +creation_date: 2010-08-09T04:17:37Z + +[Term] +id: PATO:0002252 +name: antero-posteriorly flattened +def: "A quality inhering in a bearer by virtue of the bearer's being flattened along the antero-posterior axis." [PATOC:JC] +subset: value_slim +synonym: "antero-posteriorly compressed" EXACT [] +is_a: PATO:0002254 ! flattened +created_by: george +creation_date: 2010-08-16T03:57:42Z + +[Term] +id: PATO:0002253 +name: platelike +def: "A quality inhering in a bearer by virtue of the bearer's being roundish, flattish shape, possibly with a slightly angled edge." [PATOC:CVC] +subset: value_slim +synonym: "plate-like" EXACT [] +is_a: PATO:0000407 ! flat +created_by: george +creation_date: 2010-08-16T03:57:48Z + +[Term] +id: PATO:0002254 +name: flattened +def: "A quality inhering in a bearer by virtue of the bearer's surface becoming more extended in a plane." [PATOC:CVS] +comment: Becoming flat but not necessarily completely flat. +subset: value_slim +synonym: "compressed" RELATED [] +is_a: PATO:0001591 ! curvature +created_by: george +creation_date: 2010-08-16T03:59:34Z + +[Term] +id: PATO:0002255 +name: grooved +def: "Texture quality inhering in a bearer by virtue of the bearer's being marked with one or more channels." [PATOC:JE] +subset: value_slim +synonym: "channeled" RELATED [] +synonym: "creased" RELATED [] +is_a: PATO:0000150 ! texture +created_by: george +creation_date: 2010-09-01T10:27:48Z + +[Term] +id: PATO:0002256 +name: tricuspidate +def: "A cuscpidate quality inhering in a bearer by virtue of the bearer possessing three cusps." [PATOC:WD] +subset: value_slim +synonym: "tricuspid" EXACT [] +is_a: PATO:0002257 ! multicuspidate +created_by: george +creation_date: 2010-09-08T02:21:50Z + +[Term] +id: PATO:0002257 +name: multicuspidate +def: "A cuscpidate quality inhering in a bearer by virtue of the bearer possessing more than one cusp." [PATOC:WD] +subset: value_slim +is_a: PATO:0001973 ! cuspidate +created_by: george +creation_date: 2010-09-08T02:23:22Z + +[Term] +id: PATO:0002258 +name: pointed +def: "A shape quality inhering in a bearer by virtue of the bearer's having a point." [PATOC:http\://www.merriam-webster.com/dictionary/pointed] +subset: value_slim +is_a: PATO:0001419 ! sharp +created_by: george +creation_date: 2010-09-08T03:15:16Z + +[Term] +id: PATO:0002259 +name: adjacent to +alt_id: PATO:0001771 +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located near in space in relation to another entity." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "approaches" EXACT [] +synonym: "close to" EXACT [] +synonym: "near to" EXACT [] +synonym: "vicinity of" EXACT [] +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2010-09-08T03:20:06Z + +[Term] +id: PATO:0002260 +name: semi erect +def: "A quality inhering in a bearer by virtue of the bearer's being partially upright in position or posture." [PATOC:GVG] +synonym: "semi upright" EXACT [] +is_a: PATO:0000622 ! erect +created_by: george +creation_date: 2010-09-08T03:27:21Z + +[Term] +id: PATO:0002261 +name: located in +def: "A spatial quality inhering in a bearer by virtue of the bearer's location within another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2010-09-09T09:36:56Z + +[Term] +id: PATO:0002262 +name: phosphorylation +def: "A quality inhering in a protein or a molecule by virtue of the addition of a phosphate (PO4) group to the bearer." [url:http\://en.wikipedia.org/wiki/Phosphorylation] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0002182 ! molecular quality +created_by: george +creation_date: 2010-09-16T08:57:56Z + +[Term] +id: PATO:0002263 +name: dephosphorylated +def: "A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group." [url:http\://en.wikipedia.org/wiki/Dephosphorylation] +subset: value_slim +is_a: PATO:0002262 ! phosphorylation +relationship: is_opposite_of PATO:0002220 ! phosphorylated +created_by: george +creation_date: 2010-09-16T09:04:21Z + +[Term] +id: PATO:0002264 +name: organization quality +def: "A structural quality inhering in a bearer by virtue of the bearer's being arranged in a systematic fashion." [PATOC:GVG] +subset: attribute_slim +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2010-09-16T10:22:52Z + +[Term] +id: PATO:0002265 +name: behavioural activity +def: "A behavioral quality of a process inhering in a bearer by virtue of the bearer's disposition to exhibit marked activity." [PATOC:GVG] +subset: attribute_slim +subset: disposition_slim +subset: scalar_slim +is_a: PATO:0000186 ! behavioral quality +created_by: george +creation_date: 2010-09-21T06:56:58Z + +[Term] +id: PATO:0002266 +name: 3-D shape +def: "A shape that inheres in a 3 dimensional entity." [PATOC:OREGON] +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2010-10-05T12:31:16Z + +[Term] +id: PATO:0002267 +name: edge shape +is_a: PATO:0000052 ! shape +created_by: george +creation_date: 2010-10-05T12:34:31Z + +[Term] +id: PATO:0002268 +name: centered +def: "A positional quality inhering in a bearer by virtue of the bearer's being located in a position equidistant from edges." [PATOC:OREGON] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2010-10-05T01:09:32Z + +[Term] +id: PATO:0002269 +name: accumulation +def: "A structural quality of the collection or massing of one physical object within another physical object." [PATOC:CVC] +subset: attribute_slim +subset: relational_slim +subset: scalar_slim +synonym: "pooled" RELATED [] +is_a: PATO:0000141 ! structure +created_by: george +creation_date: 2010-10-26T01:57:02Z + +[Term] +id: PATO:0002270 +name: increased accumulation +def: "An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner." [PATOC:GVG] +subset: relational_slim +subset: value_slim +synonym: "accumulated" EXACT [] +is_a: PATO:0002269 ! accumulation +relationship: is_opposite_of PATO:0002271 ! decreased accumulation +created_by: george +creation_date: 2010-10-26T02:00:20Z + +[Term] +id: PATO:0002271 +name: decreased accumulation +def: "An accumulation which is relative low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0002269 ! accumulation +relationship: is_opposite_of PATO:0002270 ! increased accumulation +created_by: george +creation_date: 2010-10-26T02:04:45Z + +[Term] +id: PATO:0002272 +name: parallel to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located at the same continuous distance relative to another object." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: george +creation_date: 2010-10-26T02:07:42Z + +[Term] +id: PATO:0002273 +name: marbled +def: "Multicolored quality inhering in a bearer by virtue of the bearer's being colored with a variegated pattern resembling marble,." [url:http\://www.oed.com/] +subset: value_slim +is_a: PATO:0001533 ! multi-colored +created_by: george +creation_date: 2010-11-16T11:17:32Z + +[Term] +id: PATO:0002274 +name: mottled +def: "Multicolored quality inhering in a bearer by virtue of the bearer's being dappled with spots, patches, or blotches of different colors." [url:http\://www.oed.com/] +subset: value_slim +is_a: PATO:0001533 ! multi-colored +created_by: george +creation_date: 2010-11-16T11:22:57Z + +[Term] +id: PATO:0002275 +name: high contrast color pattern +def: "A color pattern quality inhering in a bearer by virtue of the bearer's color pattern in which light and dark colors (for example white and black) are codistributed to create a visual impression." [PATOC:WD] +subset: disposition_slim +is_a: PATO:0000019 ! color pattern +created_by: george +creation_date: 2010-11-16T11:24:15Z + +[Term] +id: PATO:0002276 +name: barred +def: "A color pattern inhering in a bearer by virtue of bearer's exhibiting vertical bars of one hue or degree of saturation crossing another." [PATOC:WD] +subset: value_slim +is_a: PATO:0001533 ! multi-colored +created_by: george +creation_date: 2010-11-16T11:30:40Z + +[Term] +id: PATO:0002277 +name: iridescent +def: "A quality of certain surfaces which appear to change colour as the angle of view changes." [url:http\://en.wikipedia.org/wiki/Iridescence] +is_a: PATO:0001615 ! variant color +created_by: george +creation_date: 2010-12-12T12:37:41Z + +[Term] +id: PATO:0002278 +name: articulated with +def: "A structural quality inhering in a bearer by virtue of the bearer's participating in a joint with another entity." [PATOC:WD] +subset: relational_slim +is_a: PATO:0001961 ! in contact with +created_by: george +creation_date: 2011-01-20T05:39:18Z + +[Term] +id: PATO:0002279 +name: tightly articulated with +def: "A structural quality inhering in a bearer by virtue of the bearer's being strongly articulated with another entity." [PATOC:WD] +subset: relational_slim +is_a: PATO:0002278 ! articulated with +created_by: george +creation_date: 2011-01-20T05:39:59Z + +[Term] +id: PATO:0002280 +name: broadly articulated with +def: "A structural quality inhering in a bearer by virtue of the bearer's possessing a broad surface in articulation with another entity." [PATOC:WD] +subset: relational_slim +is_a: PATO:0002278 ! articulated with +created_by: george +creation_date: 2011-01-20T05:40:29Z + +[Term] +id: PATO:0002281 +name: biscupidate +def: "A cuscpidate quality inhering in a bearer by virtue of the bearer possessing two cusps." [PATOC:GVG] +synonym: "bicuspid" EXACT [] +is_a: PATO:0002257 ! multicuspidate +created_by: george +creation_date: 2011-02-07T03:13:18Z + +[Term] +id: PATO:0002282 +name: increased mobility +def: "A mobility which is relative high." [PATO:GVG] +subset: value_slim +is_a: PATO:0000299 ! mobile +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000299 ! mobile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002283 ! decreased mobility +created_by: george +creation_date: 2011-03-09T09:16:03Z + +[Term] +id: PATO:0002283 +name: decreased mobility +def: "A mobility which is relative low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000299 ! mobile +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000299 ! mobile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002282 ! increased mobility +created_by: george +creation_date: 2011-03-09T09:16:47Z + +[Term] +id: PATO:0002284 +name: tension +def: "A physical quality that pertains by virtue of a pulling force that is directed away from the bearer and attempts to stretch or elongate the bearer." [PATOC:GVG] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0001018 ! physical quality +created_by: george +creation_date: 2011-03-10T08:41:21Z + +[Term] +id: PATO:0002285 +name: increased branchiness +def: "Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:CVS] +subset: value_slim +is_a: PATO:0000402 ! branched +relationship: is_opposite_of PATO:0002286 ! decreased branchiness +created_by: george +creation_date: 2011-03-10T09:07:57Z + +[Term] +id: PATO:0002286 +name: decreased branchiness +def: "Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:CVS] +subset: value_slim +is_a: PATO:0000402 ! branched +relationship: is_opposite_of PATO:0002285 ! increased branchiness +created_by: george +creation_date: 2011-03-10T09:08:37Z + +[Term] +id: PATO:0002287 +name: increased elasticity +def: "An elasticity which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001171 ! elastic +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001171 ! elastic +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002288 ! decreased elasticity +created_by: George Gkoutos +creation_date: 2011-03-30T11:50:21Z + +[Term] +id: PATO:0002288 +name: decreased elasticity +def: "An elasticity which is relatively low." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001171 ! elastic +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001171 ! elastic +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002287 ! increased elasticity +created_by: George Gkoutos +creation_date: 2011-03-30T11:50:39Z + +[Term] +id: PATO:0002289 +name: setose +def: "A hairy quality inhering in a bearer by virtue of the bearer's being covered with setae." [ISBN:0913424137] +comment: Setose as a label is used extensively to describe insect phenotypes that have hairy-like appearances (i.e., they are covered in setae, not the hairs of mammals). A bristle is a type of seta. +subset: value_slim +is_a: PATO:0000454 ! hairy +created_by: George Gkoutos +creation_date: 2011-04-04T08:44:10Z + +[Term] +id: PATO:0002290 +name: aplastic/hypoplastic +is_a: PATO:0001241 ! physical object quality +created_by: George Gkoutos +creation_date: 2011-04-18T05:11:33Z + +[Term] +id: PATO:0002291 +name: agenesis +def: "Absence of a tissue or organ due to failure to develop." [PATO:GVG] +is_a: PATO:0000462 ! absent +created_by: George Gkoutos +creation_date: 2011-04-18T05:17:34Z + +[Term] +id: PATO:0002292 +name: transient +def: "A structural quality inhering in a bearer by virtue of the bearer's underlying structure being capable of change." [PATOC:WD] +comment: For example, structures undergoing endochondral ossification change in composition from cartilaginous to ossified. +synonym: "transient structure" EXACT [] +is_a: PATO:0000141 ! structure +disjoint_from: PATO:0002293 ! permanent +created_by: George Gkoutos +creation_date: 2011-05-03T03:01:59Z + +[Term] +id: PATO:0002293 +name: permanent +def: "A structural quality inhering in a bearer by virtue of the bearer's underlying structure not changing over time." [PATOC:WD] +synonym: "permanent structure" EXACT [] +is_a: PATO:0000141 ! structure +created_by: George Gkoutos +creation_date: 2011-05-03T03:03:50Z + +[Term] +id: PATO:0002294 +name: scrobiculate +def: "A texture that is uniformly covered in short, oblong, or trench-like depressions." [Book:Book] +is_a: PATO:0000150 ! texture +created_by: George Gkoutos +creation_date: 2011-05-03T03:12:47Z + +[Term] +id: PATO:0002295 +name: areolate +def: "A surface feature shape inhering in a surface by virtue of the bearer's being divided by ridge-like structures into a number of small, irregular spaces." [Book:Book] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape +created_by: George Gkoutos +creation_date: 2011-05-17T07:57:45Z + +[Term] +id: PATO:0002296 +name: foveate +def: "A texture quality inhering in a surface by virtue of the bearer's being marked by the presence of small, shallow, regular depressions called fovae." [Book:Book] +subset: value_slim +synonym: "foveolate" RELATED [] +synonym: "pitted" RELATED [] +is_a: PATO:0000150 ! texture +created_by: George Gkoutos +creation_date: 2011-05-17T07:59:30Z + +[Term] +id: PATO:0002297 +name: decreased cellular motility +def: "A cellular motility which is lower relative to the normal or average." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001488 ! cellular motility +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001488 ! cellular motility +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002298 ! increased cellular motility + +[Term] +id: PATO:0002298 +name: increased cellular motility +def: "A cellular motility which is higher relative to the normal or average." [PATOC:GVG] +subset: value_slim +is_a: PATO:0001488 ! cellular motility +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001488 ! cellular motility +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002297 ! decreased cellular motility + +[Term] +id: PATO:0002299 +name: tubular +def: "A cylindrical shape that is hollow." [PATOC:GVG] +synonym: "tube like" EXACT [] +synonym: "tube-shaped" EXACT [] +synonym: "tubulate" EXACT [] +is_a: PATO:0001873 ! cylindrical +is_a: PATO:0002078 ! hollow +created_by: George Gkoutos +creation_date: 2011-06-08T06:33:50Z + +[Term] +id: PATO:0002300 +name: increased quality +def: "A quality that has a value that is increased compared to normal or average." [PATOC:GVG] +is_a: PATO:0000069 ! deviation(from_normal) +intersection_of: PATO:0000001 ! quality +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002301 ! decreased quality +created_by: George Gkoutos +creation_date: 2011-06-16T06:39:43Z + +[Term] +id: PATO:0002301 +name: decreased quality +def: "A quality that has a value that is decreased compared to normal or average." [PATOC:GVG] +is_a: PATO:0000069 ! deviation(from_normal) +intersection_of: PATO:0000001 ! quality +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002300 ! increased quality +created_by: George Gkoutos +creation_date: 2011-06-16T06:40:15Z + +[Term] +id: PATO:0002302 +name: decreased process quality +def: "A quality of a process that has a value that is decreased compared to normal or average." [PATOC:GVG] +is_a: PATO:0001236 ! process quality +is_a: PATO:0002301 ! decreased quality +intersection_of: PATO:0001236 ! process quality +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002304 ! increased process quality +created_by: George Gkoutos +creation_date: 2011-06-16T06:50:59Z + +[Term] +id: PATO:0002303 +name: decreased object quality +def: "A quality of an object that has a value that is decreased compared to normal or average." [PATOC:GVG] +is_a: PATO:0001241 ! physical object quality +is_a: PATO:0002301 ! decreased quality +intersection_of: PATO:0001241 ! physical object quality +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002305 ! increased object quality +created_by: George Gkoutos +creation_date: 2011-06-16T06:51:54Z + +[Term] +id: PATO:0002304 +name: increased process quality +def: "A quality of a process that has a value that is increased compared to normal or average." [PATOC:GVG] +is_a: PATO:0001236 ! process quality +is_a: PATO:0002300 ! increased quality +intersection_of: PATO:0001236 ! process quality +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002302 ! decreased process quality +created_by: George Gkoutos +creation_date: 2011-06-16T06:53:08Z + +[Term] +id: PATO:0002305 +name: increased object quality +def: "A quality of an object that has a value that is increased compared to normal or average." [PATOC:GVG] +is_a: PATO:0001241 ! physical object quality +is_a: PATO:0002300 ! increased quality +intersection_of: PATO:0001241 ! physical object quality +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002303 ! decreased object quality +created_by: George Gkoutos +creation_date: 2011-06-16T06:54:01Z + +[Term] +id: PATO:0002306 +name: equilateral triangular +def: "A triangular quality inhering in a bearer by virtue of the bearer's having all sides of the same length." [PATOC:JB] +subset: value_slim +is_a: PATO:0001875 ! triangular +disjoint_from: PATO:0002307 ! isosceles triangular +disjoint_from: PATO:0002308 ! scalene triangular +created_by: George Gkoutos +creation_date: 2011-06-27T11:22:50Z + +[Term] +id: PATO:0002307 +name: isosceles triangular +def: "A triangular quality inhering in a bearer by virtue of the bearer's having two sides have the same length." [PATOC:JB] +subset: scalar_slim +is_a: PATO:0001875 ! triangular +disjoint_from: PATO:0002308 ! scalene triangular +created_by: George Gkoutos +creation_date: 2011-06-27T11:23:52Z + +[Term] +id: PATO:0002308 +name: scalene triangular +def: "A triangular quality inhering in a bearer by virtue of the bearer's having all sides of unequal length." [PATOC:JB] +subset: value_slim +is_a: PATO:0001875 ! triangular +created_by: George Gkoutos +creation_date: 2011-06-27T11:24:24Z + +[Term] +id: PATO:0002309 +name: fiber shaped +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a by virtue of the bearer's exhibiting a consistently sized and approximately round cross-section along its length, which is many times larger than its diameter." [PATOC:DC] +comment: Note that a fiber shaped object may take any circuitous or straight path through space (think of a length of string or rope). +subset: value_slim +is_a: PATO:0002226 ! subcylindrical +created_by: George Gkoutos +creation_date: 2011-09-09T04:50:10Z + +[Term] +id: PATO:0002310 +name: robust +def: "A quality inhering in a bearer by virtue of the bearer's being strong, thick or sturdy." [PATOC:BF] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2011-09-20T06:23:31Z + +[Term] +id: PATO:0002311 +name: fimbriated +def: "Having a fringe or border of hairlike or fingerlike projections." [PATO:WS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2011-09-22T03:52:11Z + +[Term] +id: PATO:0002312 +name: segmented +def: "Consisting of segments or similar parts arranged in a longitudinal series." [OED:] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: George Gkoutos +creation_date: 2011-10-03T03:42:23Z + +[Term] +id: PATO:0002313 +name: telescopic +def: "Having or resembling the shape of a telescope." [PATOC:BF] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2011-10-03T03:49:26Z + +[Term] +id: PATO:0002314 +name: ligamentous +def: "Having the nature or characteristic of, a ligament; composed of the tissue proper to ligaments." [PATOC:BF] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: George Gkoutos +creation_date: 2011-10-03T03:57:39Z + +[Term] +id: PATO:0002315 +name: brush-like shape +def: "A shape quality inhering in a bearer by virtue of the bearer's resembling the end of a brush with a multitude of bristles." [PATOC:BF] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: George Gkoutos +creation_date: 2011-10-03T03:59:59Z + +[Term] +id: PATO:0002316 +name: autogenous +def: "Being separate or discrete from other skeletal elements." [PATOC:WD] +subset: value_slim +synonym: "free" RELATED [] +is_a: PATO:0000141 ! structure +created_by: George Gkoutos +creation_date: 2011-10-03T04:17:08Z + +[Term] +id: PATO:0002317 +name: parallelogram +def: "A convex quadrilateral is a parallelogram if and only if any one of the following statements are true:\n1. Each diagonal divides the quadrilateral into two congruent triangles with the same orientation.\n2. The opposite sides are congruent in pairs.\n3. The diagonals bisect each other.\n4. The opposite angles are congruent in pairs.\n5. The sum of the squares of the sides equals the sum of the squares of the diagonals. (This is the parallelogram law)\n6.It possesses rotational symmetry.\n7.One pair of opposite sides are parallel and congruent.\n8.Two pairs of adjacent angles are supplementary." [wikipedia:Parallelogram] +subset: value_slim +is_a: PATO:0001988 ! quadrangular +created_by: George Gkoutos +creation_date: 2011-10-12T12:33:07Z + +[Term] +id: PATO:0002318 +name: superelliptic +def: "A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt" [wiktionary:superellipse] +synonym: "Lamé curve" EXACT [] +is_a: PATO:0002006 ! 2-D shape +created_by: George Gkoutos +creation_date: 2011-10-12T12:45:16Z + +[Term] +id: PATO:0002319 +name: squircle +def: "A shape with properties between those of a square and those of a circle." [wikipedia:Squircle] +subset: value_slim +is_a: PATO:0002318 ! superelliptic +created_by: George Gkoutos +creation_date: 2011-10-12T12:47:48Z + +[Term] +id: PATO:0002320 +name: diamond shaped +def: "A superelptic shape inhering in a bearer by virtue of the bearer's shape resembling a diamond." [PATO:WC] +subset: value_slim +is_a: PATO:0002318 ! superelliptic +created_by: George Gkoutos +creation_date: 2011-10-12T12:49:06Z + +[Term] +id: PATO:0002321 +name: hypoelliptic +is_a: PATO:0002318 ! superelliptic +relationship: is_opposite_of PATO:0002322 ! hyperelliptic +created_by: George Gkoutos +creation_date: 2011-10-12T12:50:59Z + +[Term] +id: PATO:0002322 +name: hyperelliptic +is_a: PATO:0002318 ! superelliptic +relationship: is_opposite_of PATO:0002321 ! hypoelliptic +created_by: George Gkoutos +creation_date: 2011-10-12T12:51:19Z + +[Term] +id: PATO:0002323 +name: temporal distribution quality +def: "A temporal distribution pattern of process occurrences within a regulation/reference process." [PATOC:LC] +subset: attribute_slim +is_a: PATO:0002062 ! physical quality of a process +created_by: George Gkoutos +creation_date: 2011-11-22T01:12:28Z + +[Term] +id: PATO:0002324 +name: offset quality +def: "The temporal relation between the end of the process with respect to a reference process." [PATOC:LC] +subset: attribute_slim +synonym: "completeness" RELATED [GOC:CJM] +synonym: "extent" RELATED [GOC:CJM] +is_a: PATO:0002323 ! temporal distribution quality +created_by: George Gkoutos +creation_date: 2011-11-23T11:46:00Z + +[Term] +id: PATO:0002325 +name: onset quality +def: "The temporal relation between the start of the process with respect to a reference process." [PATOC:LC] +subset: attribute_slim +synonym: "initiation" RELATED [] +is_a: PATO:0002323 ! temporal distribution quality +created_by: George Gkoutos +creation_date: 2011-11-23T11:47:34Z + +[Term] +id: PATO:0002326 +name: angle +def: "An orientation inhering in a bearer by virtue of the bearer's placement at an angle." [PATOC:GVG] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0000133 ! orientation +created_by: George Gkoutos +creation_date: 2011-11-23T12:06:09Z + +[Term] +id: PATO:0002327 +name: increased angle to +def: "An angle which is relatively high." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001475 ! increased position +is_a: PATO:0002326 ! angle +intersection_of: PATO:0002326 ! angle +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002328 ! decreased angle to +created_by: George Gkoutos +creation_date: 2011-11-23T12:06:38Z + +[Term] +id: PATO:0002328 +name: decreased angle to +def: "An angle which is relatively low." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0001476 ! decreased position +is_a: PATO:0002326 ! angle +intersection_of: PATO:0002326 ! angle +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002327 ! increased angle to +created_by: George Gkoutos +creation_date: 2011-11-23T12:06:54Z + +[Term] +id: PATO:0002329 +name: hyponastic +def: "A shape quality inhering in a bearer by virtue of the bearer's exhibiting a upward bending of its leaves or other plant parts." [PATOC:DS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-01-31T11:40:23Z + +[Term] +id: PATO:0002330 +name: oblanceolate +def: "A quality inhering in a bearer by virtue of the bearer's being extended along a straight line, and is shaped like a reversed lance-point, with the tapering point attached to the leafstalk." [PATOC:PG] +subset: value_slim +is_a: PATO:0001199 ! linear +created_by: gkoutos +creation_date: 2012-01-31T11:57:54Z + +[Term] +id: PATO:0002331 +name: adhesive +def: "A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact." [PATOC:GVG] +subset: value_slim +synonym: "resinous" RELATED [] +is_a: PATO:0001431 ! adhesivity +relationship: is_opposite_of PATO:0002332 ! non-adhesive +created_by: gkoutos +creation_date: 2012-01-31T12:28:16Z + +[Term] +id: PATO:0002332 +name: non-adhesive +def: "A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact." [PATOC:GVG] +subset: value_slim +synonym: "non-resinous" RELATED [] +is_a: PATO:0001431 ! adhesivity +relationship: is_opposite_of PATO:0002331 ! adhesive +created_by: gkoutos +creation_date: 2012-01-31T12:28:57Z + +[Term] +id: PATO:0002333 +name: increased adhesivity +def: "A adhesivity which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0002331 ! adhesive +intersection_of: PATO:0002331 ! adhesive +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002334 ! decreased adhesivity +created_by: gkoutos +creation_date: 2012-01-31T12:32:43Z + +[Term] +id: PATO:0002334 +name: decreased adhesivity +def: "A adhesivity which is relatively low." [PATOC:GVG] +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0002331 ! adhesive +intersection_of: PATO:0002331 ! adhesive +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002333 ! increased adhesivity +created_by: gkoutos +creation_date: 2012-01-31T12:42:22Z + +[Term] +id: PATO:0002335 +name: tholiform +def: "A shape quality inhering in a bearer by virtue of the bearer's being dome-shaped." [PATOC:dd] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-01-31T02:32:14Z + +[Term] +id: PATO:0002336 +name: pyramidal +def: "A shape quality inhering in a bearer by virtue of the bearer's having triangular faces that meet at a common point and containing a polygonal shaped base." [PATOC:DD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-01-31T02:35:02Z + +[Term] +id: PATO:0002337 +name: lance-ovate +def: "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; characterized with an egg-shaped form crossed with a lance-head shaped form." [PATOC:DD] +subset: value_slim +is_a: PATO:0001877 ! lanceolate +created_by: gkoutos +creation_date: 2012-01-31T02:43:15Z + +[Term] +id: PATO:0002338 +name: lanceolate-triangular +def: "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle together forming three angles; attached at the broad end." [PATOC:DD] +subset: value_slim +is_a: PATO:0001877 ! lanceolate +created_by: gkoutos +creation_date: 2012-01-31T02:46:43Z + +[Term] +id: PATO:0002339 +name: hispid +def: "A quality of being covered with stiff or rough hairs." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000454 ! hairy +created_by: gkoutos +creation_date: 2012-01-31T02:51:37Z + +[Term] +id: PATO:0002340 +name: hispidulous +def: "A quality of being minutely hispid." [PATOC:DD] +subset: value_slim +is_a: PATO:0002339 ! hispid +created_by: gkoutos +creation_date: 2012-01-31T02:53:21Z + +[Term] +id: PATO:0002341 +name: tomentose +def: "A quality of being covered with short, dense, matted hairs." [thefreedictionary:www.thefreedictionary.com] +subset: value_slim +is_a: PATO:0000454 ! hairy +created_by: gkoutos +creation_date: 2012-01-31T02:55:56Z + +[Term] +id: PATO:0002342 +name: cupulate +def: "A quality inhering in a bearer by virtue of the bearer's being a cupule, with a structure similar to a cup that also encloses the ovule in partiality." [PATOC:DD] +subset: value_slim +is_a: PATO:0002227 ! cup-shaped +created_by: gkoutos +creation_date: 2012-01-31T02:59:07Z + +[Term] +id: PATO:0002343 +name: decumbent +def: "A positional quality inhering in a bearer by virtue of the bearer's lying or growing on the ground but with erect or rising tips." [thefreedictionary:www.thefreedictionary.com] +subset: value_slim +is_a: PATO:0000631 ! prostrate +created_by: gkoutos +creation_date: 2012-01-31T03:13:12Z + +[Term] +id: PATO:0002344 +name: arachnose +def: "A quality inhering in a bearer by virtue of the bearer's being characterized by fine, entangled hairs giving the appearance of cobweb." [PATOC:DD] +subset: value_slim +is_a: PATO:0000454 ! hairy +created_by: gkoutos +creation_date: 2012-01-31T03:49:00Z + +[Term] +id: PATO:0002345 +name: lemon-shaped +def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc" [PATOC:MH] +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape +created_by: gkoutos +creation_date: 2012-01-31T03:55:16Z + +[Term] +id: PATO:0002346 +name: snowman-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two connected parts, roughly spherical, of different sizes." [PATOC:MH] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: gkoutos +creation_date: 2012-01-31T03:58:10Z + +[Term] +id: PATO:0002347 +name: obconical +def: "A conical quality inhering in a bearer by virtue of the bearer's resembling a cone, with the pointed end attached to an organism." [wiktionary:http\://en.wiktionary.org/wiki/obconical] +subset: value_slim +is_a: PATO:0002021 ! conical +created_by: gkoutos +creation_date: 2012-01-31T04:05:28Z + +[Term] +id: PATO:0002348 +name: ligneous +def: "A structural quality inhering in a bearer by virtue of the bearer resembling wood." [merriam-webster:http\://www.merriam-webster.com/dictionary/ligneous] +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2012-01-31T04:06:50Z + +[Term] +id: PATO:0002349 +name: basal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the base of an organism relative to another entity." [merriam-webster:http\://www.merriam-webster.com/dictionary/basal] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-01-31T04:12:25Z + +[Term] +id: PATO:0002350 +name: cauline to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the stalk of an organism relative to another entity." [merriam-webster:http\://www.merriam-webster.com/dictionary/cauline] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-01-31T04:13:06Z + +[Term] +id: PATO:0002351 +name: fleshy +def: "A structural quality inhering in a bearer by virtue of the bearer resembling or containing flesh." [wiktionary:http\://en.wiktionary.org/wiki/fleshy] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: gkoutos +creation_date: 2012-01-31T04:15:30Z + +[Term] +id: PATO:0002352 +name: herbaceous +def: "A quality inhering in a bearer by virtue of the bearer's upper parts die back to the rootstock at the end of the growing season." [PATOC:PG] +subset: scalar_slim +is_a: PATO:0001729 ! shedability +created_by: gkoutos +creation_date: 2012-01-31T04:29:36Z + +[Term] +id: PATO:0002353 +name: activation quality +def: "A quality that inheres in a bearer in virtue of its realizing one of its functions." [PATOC:RH] +subset: attribute_slim +is_a: PATO:0001509 ! functionality +created_by: gkoutos +creation_date: 2012-01-31T04:51:42Z + +[Term] +id: PATO:0002354 +name: active +def: "A quality of an physical object that is currently realizing one of its functions." [PATOC:RH] +subset: attribute_slim +is_a: PATO:0002353 ! activation quality +relationship: is_opposite_of PATO:0002355 ! inactive +created_by: gkoutos +creation_date: 2012-01-31T04:52:04Z + +[Term] +id: PATO:0002355 +name: inactive +def: "A quality of a physical object that is currently realizing none of its functions." [PATOC:RH] +subset: attribute_slim +is_a: PATO:0002353 ! activation quality +relationship: is_opposite_of PATO:0002354 ! active +created_by: gkoutos +creation_date: 2012-01-31T04:52:14Z + +[Term] +id: PATO:0002356 +name: constitutively active +def: "A quality of a physical object that has been constantly realizing some of its functions." [PATOC:RH] +subset: attribute_slim +is_a: PATO:0002354 ! active +created_by: gkoutos +creation_date: 2012-01-31T04:52:24Z + +[Term] +id: PATO:0002357 +name: D-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's having a strait side and an arched side giving the bearer the form of the letter D." [PATOC:AE] +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape +created_by: gkoutos +creation_date: 2012-02-21T11:46:51Z + +[Term] +id: PATO:0002358 +name: ridged +def: "An elongated raised margin or border." [PATOC:GVG] +subset: value_slim +synonym: "ridge-like" EXACT [] +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-02-21T12:27:39Z + +[Term] +id: PATO:0002359 +name: broad +def: "A quality inhering in a bearer by virtue of the bearer's width being notably higher than its length." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-03-13T06:04:00Z + +[Term] +id: PATO:0002360 +name: tendency +def: "A disposition that can be compared on a linear scale - that is that it can be increased or decreased." [PATOC:RH] +subset: attribute_slim +subset: disposition_slim +subset: relational_slim +is_a: PATO:0001727 ! disposition +created_by: gkoutos +creation_date: 2012-03-16T06:31:50Z + +[Term] +id: PATO:0002361 +name: increased tendency +def: "A tendency which is relatively high." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0002360 ! tendency +intersection_of: PATO:0002360 ! tendency +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002362 ! decreased tendency +created_by: gkoutos +creation_date: 2012-03-16T06:31:57Z + +[Term] +id: PATO:0002362 +name: decreased tendency +def: "A tendency which is relatively low." [PATOC:GVG] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0002360 ! tendency +intersection_of: PATO:0002360 ! tendency +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002361 ! increased tendency +created_by: gkoutos +creation_date: 2012-03-16T06:32:57Z + +[Term] +id: PATO:0002363 +name: bronze +def: "A medium brown color with a metallic sheen, resembles the actual alloy bronze." [PATO:LC] +subset: value_slim +is_a: PATO:0000952 ! brown +created_by: gkoutos +creation_date: 2012-05-03T11:08:18Z + +[Term] +id: PATO:0002364 +name: shortened +def: "A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000052 ! shape +relationship: is_opposite_of PATO:0001154 ! elongated +created_by: gkoutos +creation_date: 2012-04-18T06:31:29Z + +[Term] +id: PATO:0002365 +name: intact female +def: "Female quality of having complete, unaltered reproductive organs" [PATOC:MF] +subset: value_slim +is_a: PATO:0000383 ! female +created_by: gkoutos +creation_date: 2012-05-03T11:18:41Z + +[Term] +id: PATO:0002366 +name: intact male +def: "Male quality of having complete, unaltered reproductive organs." [PATOC:MF] +subset: value_slim +is_a: PATO:0000384 ! male +created_by: gkoutos +creation_date: 2012-05-03T11:19:06Z + +[Term] +id: PATO:0002367 +name: castrated male +def: "Male quality of being incapable to reproduce because of functional loss of the testicles from surgical removal or chemical means." [PATOC:MF] +subset: value_slim +is_a: PATO:0000384 ! male +created_by: gkoutos +creation_date: 2012-05-03T11:22:29Z + +[Term] +id: PATO:0002368 +name: nulliparous +def: "A viviparous organism having never given birth." [PATOC:mf] +subset: value_slim +is_a: PATO:0002370 ! parity +created_by: gkoutos +creation_date: 2012-05-03T11:25:25Z + +[Term] +id: PATO:0002369 +name: multiparous +def: "A viviparous organism that has given birth two or more times." [wiki:http\://en.wikipedia.org/wiki/Parity_(biology)] +subset: value_slim +is_a: PATO:0002370 ! parity +created_by: gkoutos +creation_date: 2012-05-03T11:26:34Z + +[Term] +id: PATO:0002370 +name: parity +def: "The number of time that a viviparous organism has given birth." [wiki:http\://en.wikipedia.org/wiki/Parity_(biology)] +subset: attribute_slim +is_a: PATO:0001434 ! reproductive quality +created_by: gkoutos +creation_date: 2012-05-03T11:27:56Z + +[Term] +id: PATO:0002371 +name: primiparous +def: "A viviparous organism having given birth one time." [wiki:http\://en.wikipedia.org/wiki/Parity_(biology)] +subset: value_slim +is_a: PATO:0002370 ! parity +created_by: gkoutos +creation_date: 2012-05-03T11:29:38Z + +[Term] +id: PATO:0002372 +name: grand multi[arous +def: "A viviparous organism that has given birth five or more times." [wiki:http\://en.wikipedia.org/wiki/Parity_(biology)] +subset: value_slim +is_a: PATO:0002369 ! multiparous +created_by: gkoutos +creation_date: 2012-05-03T11:30:28Z + +[Term] +id: PATO:0002373 +name: mediolateral polarity +def: "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the mediolateral axis." [PATOC:DS] +subset: value_slim +is_a: PATO:0001769 ! positional polarity +created_by: gkoutos +creation_date: 2012-07-05T01:49:04Z + +[Term] +id: PATO:0002374 +name: fluctuating +def: "Recurrent and often more or less cyclic alteration." [PATOC:DS] +subset: value_slim +is_a: PATO:0001227 ! variant +created_by: gkoutos +creation_date: 2012-07-05T01:52:36Z + +[Term] +id: PATO:0002375 +name: trumpet-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a trumpet." [PATOC:DS] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: gkoutos +creation_date: 2012-07-05T02:45:17Z + +[Term] +id: PATO:0002376 +name: inflated +def: "A structure quality inhering in a bearer by virtue of the bearer's being filled with air." [PATOC:CVS] +subset: value_slim +synonym: "air-filled" EXACT [] +is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0002377 ! uninflated +created_by: gkoutos +creation_date: 2012-07-05T02:55:10Z + +[Term] +id: PATO:0002377 +name: uninflated +def: "A structure quality inhering in a bearer by virtue of the bearer's being not filed with air." [PATOC:CVS] +subset: value_slim +is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0002376 ! inflated +created_by: gkoutos +creation_date: 2012-07-05T02:56:07Z + +[Term] +id: PATO:0002378 +name: acinus +def: "Having a shape that resembles a many-lobed \"berry,\" such as a raspberry." [wikipedia:https\://en.wikipedia.org/wiki/Acinus] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001979 ! lobed +created_by: gkoutos +creation_date: 2012-07-05T02:58:05Z + +[Term] +id: PATO:0002379 +name: ovariohysterectomized female +def: "A female fertility quality inhering in a female by virtue of the bearer's not being capable of reproducing because of surgical removal of ovaries and uterus." [PATOC:MF] +subset: value_slim +is_a: PATO:0000892 ! female sterile +created_by: gkoutos +creation_date: 2012-07-05T03:04:28Z + +[Term] +id: PATO:0002380 +name: ovariectomized female +def: "A female fertility quality inhering in a female by virtue of the bearer's not being capable of reproducing because of surgical removal of ovaries." [PATOC:MF] +subset: value_slim +is_a: PATO:0000892 ! female sterile +created_by: gkoutos +creation_date: 2012-07-05T03:06:12Z + +[Term] +id: PATO:0002381 +name: waxiness +def: "A composition quality inhering in an bearer by virtue of the presence of long chain aliphatic lipids on the surface of an organism." [PATOC:lm] +subset: attribute_slim +is_a: PATO:0000025 ! composition +created_by: gkoutos +creation_date: 2012-07-05T03:17:00Z + +[Term] +id: PATO:0002382 +name: increased waxiness +def: "A waxiness which is relatively high." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0002381 ! waxiness +intersection_of: PATO:0002381 ! waxiness +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002383 ! decreased waxiness +created_by: gkoutos +creation_date: 2012-07-05T03:18:03Z + +[Term] +id: PATO:0002383 +name: decreased waxiness +def: "A waxiness which is relatively low." [] +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0002381 ! waxiness +intersection_of: PATO:0002381 ! waxiness +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002382 ! increased waxiness +created_by: gkoutos +creation_date: 2012-07-05T03:18:14Z + +[Term] +id: PATO:0002384 +name: waxy +def: "Presence of long chain aliphatic lipids on the surface of an organism." [PATOC:lm] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002381 ! waxiness +created_by: gkoutos +creation_date: 2012-07-05T03:18:21Z + +[Term] +id: PATO:0002385 +name: striate-angular +def: "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines, usually parallel, with at least one salient angle on the margin" [FNA:FNA] +subset: value_slim +is_a: PATO:0001410 ! striated +created_by: gkoutos +creation_date: 2012-07-05T05:17:07Z + +[Term] +id: PATO:0002386 +name: anvil +def: "A concave 3-D shape that inheres in the bearer by virtue of the bearer's shape that is wider at one end and narrow in the middle." [PATOC:AD] +synonym: "anvil shaped" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape +created_by: gkoutos +creation_date: 2012-07-23T03:13:41Z + +[Term] +id: PATO:0002387 +name: peracute +def: "Extremely acute and aggressive onset of a pathological process." [PATOC:PNS] +subset: mpath_slim +subset: value_slim +synonym: "per-acute" EXACT [] +is_a: PATO:0000389 ! acute +created_by: gkoutos +creation_date: 2012-09-15T02:57:46Z + +[Term] +id: PATO:0002388 +name: pedunculate +def: "Being supported by a peduncle or stalk." [PATOC:GV] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2012-10-12T01:10:41Z + +[Term] +id: PATO:0002389 +name: procumbent +def: "Growing horizontal to the ground without setting roots." [PATO:PG] +subset: value_slim +is_a: PATO:0000631 ! prostrate +created_by: gkoutos +creation_date: 2012-10-12T01:33:50Z + +[Term] +id: PATO:0002390 +name: radius +def: "A length quality which is equal to the length of any straight line segment that passes from the center of a circle to any endpoint on the circular boundary. The radius is half of the diameter." [PATO:DS] +subset: attribute_slim +subset: scalar_slim +is_a: PATO:0000122 ! length +created_by: gkoutos +creation_date: 2012-11-15T05:17:15Z + +[Term] +id: PATO:0002391 +name: triradiate +def: "A shape quality inhering in a bearer by virtue of the bearer's having three rays or radiating branches." [merriam-webster:merriam-webster] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-11-15T05:19:32Z + +[Term] +id: PATO:0002392 +name: diagonal to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located on a sloping line joining two nonconsecutive points of an entity relative to another entity." [PATOC:GVG] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-11-15T05:21:51Z + +[Term] +id: PATO:0002393 +name: increased tolerance to +def: "A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus." [PATOC:LC] +subset: relational_slim +subset: value_slim +is_a: PATO:0000515 ! tolerant to +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000515 ! tolerant to +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002394 ! decreased tolerance to +created_by: gkoutos +creation_date: 2012-11-15T05:32:07Z + +[Term] +id: PATO:0002394 +name: decreased tolerance to +def: "A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus." [PATOC:LC] +subset: relational_slim +subset: value_slim +is_a: PATO:0000515 ! tolerant to +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0000515 ! tolerant to +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002393 ! increased tolerance to +created_by: gkoutos +creation_date: 2012-11-15T05:33:05Z + +[Term] +id: PATO:0002395 +name: mislocalized abaxially +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned away from the axis of an organism." [PATOC:EH] +subset: value_slim +is_a: PATO:0000628 ! mislocalised +created_by: gkoutos +creation_date: 2012-11-20T04:13:32Z + +[Term] +id: PATO:0002396 +name: mislocalized adaxially +def: "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the axis of an organism." [PATOC:EH] +subset: value_slim +is_a: PATO:0000628 ! mislocalised +created_by: gkoutos +creation_date: 2012-11-20T04:15:12Z + +[Term] +id: PATO:0002397 +name: subcircular +def: "A circular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, circular." [PATOC:AD] +subset: value_slim +synonym: "round" RELATED [] +synonym: "rounded" RELATED [] +is_a: PATO:0002006 ! 2-D shape +created_by: gkoutos +creation_date: 2012-12-07T05:32:18Z + +[Term] +id: PATO:0002398 +name: obsolete +is_obsolete: true +created_by: gkoutos +creation_date: 2012-12-07T05:34:16Z + +[Term] +id: PATO:0002399 +name: anteromedially rotated +def: "A rotation quality inhering in a bearer by virtue of being rotated towards the front and the middle of an organism." [PATOC:JI] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001599 ! rotated +created_by: gkoutos +creation_date: 2012-12-07T05:41:01Z + +[Term] +id: PATO:0002400 +name: fusiform +def: "Having a spindle-like shape that is wide in the middle and tapers at both ends." [wikipedia:wikipedia] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001409 ! spindle-shaped +created_by: gkoutos +creation_date: 2012-12-07T05:43:25Z + +[Term] +id: PATO:0002401 +name: random pattern +def: "characterised by an unidentifiable pattern." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +created_by: gkoutos +creation_date: 2012-12-17T10:37:55Z + +[Term] +id: PATO:0002402 +name: multifocal to coalescing +def: "Multiple lesions some interconnecting with each other." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001791 ! multi-localised +created_by: gkoutos +creation_date: 2012-12-17T10:40:18Z + +[Term] +id: PATO:0002403 +name: generalized +def: "Affecting all regions without specificity of distribution." [PATOC:MPTH] +subset: hpo_slim +subset: mpath_slim +subset: value_slim +synonym: "generalised" EXACT [] +is_a: PATO:0000060 ! spatial pattern +created_by: gkoutos +creation_date: 2012-12-17T10:41:37Z + +[Term] +id: PATO:0002404 +name: segmental +def: "Affecting a segment or segments." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000060 ! spatial pattern +created_by: gkoutos +creation_date: 2012-12-17T10:43:13Z + +[Term] +id: PATO:0002405 +name: friability +def: "A structural quality inhering in a bearer by virtue of the bearer's disposition to be reduced to smaller pieces with little effort." [Wikipedia:https\://en.wikipedia.org/wiki/Friability] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2012-12-17T10:47:16Z + +[Term] +id: PATO:0002406 +name: friable +def: "Easily reduced to powder or easily fragmentable or crumbly." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002405 ! friability +created_by: gkoutos +creation_date: 2012-12-17T10:48:30Z + +[Term] +id: PATO:0002407 +name: indurated +def: "Having become firm or hard especially by increase of fibrous elements." [mw:http\://www.merriam-webster.com/dictionary/indurated] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002405 ! friability +created_by: gkoutos +creation_date: 2012-12-17T10:49:11Z + +[Term] +id: PATO:0002408 +name: watery +def: "Having the consistency of water." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: gkoutos +creation_date: 2012-12-17T10:51:32Z + +[Term] +id: PATO:0002409 +name: fluid-filled +def: "Bounded structure filled with fluid." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002014 ! structure, cavities +created_by: gkoutos +creation_date: 2012-12-17T10:53:18Z + +[Term] +id: PATO:0002410 +name: beige +def: "A colour that is very pale yellowish brown." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002413 ! light yellow brown +created_by: gkoutos +creation_date: 2012-12-17T10:54:55Z + +[Term] +id: PATO:0002411 +name: yellow brown +def: "A color consisting of yellow and brown hue." [PATOC:GVG] +subset: value_slim +is_a: PATO:0000952 ! brown +created_by: gkoutos +creation_date: 2012-12-17T10:55:51Z + +[Term] +id: PATO:0002412 +name: dark yellow brown +def: "A color consisting of yellow and brown hue and low brightness." [PATOC:GVG] +subset: value_slim +is_a: PATO:0002411 ! yellow brown +created_by: gkoutos +creation_date: 2012-12-17T10:56:22Z + +[Term] +id: PATO:0002413 +name: light yellow brown +def: "A color consisting of yellow and brown hue and high brightness." [PATOC:GVG] +is_a: PATO:0002411 ! yellow brown +created_by: gkoutos +creation_date: 2012-12-17T10:57:27Z + +[Term] +id: PATO:0002414 +name: chronic-active +def: "A quality of duration having progressive course of indefinite duration with active, acute-like elements." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001863 ! chronic +created_by: gkoutos +creation_date: 2012-12-17T10:59:58Z + +[Term] +id: PATO:0002415 +name: focally extensive +def: "Single lesion with expansion into surrounding tissue." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000627 ! localized +created_by: gkoutos +creation_date: 2012-12-17T11:01:31Z + +[Term] +id: PATO:0002416 +name: sunken +def: "Flattened from above downward; below the normal level or the level of the surrounding parts." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001687 ! elevation +created_by: gkoutos +creation_date: 2012-12-17T12:06:55Z + +[Term] +id: PATO:0002417 +name: transmural +def: "Extending through or affecting the entire thickness of the wall of an organ or cavity or boundary." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-12-17T02:16:18Z + +[Term] +id: PATO:0002418 +name: acidophilic +def: "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for acidic dyes under specific ph conditions." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +created_by: gkoutos +creation_date: 2012-12-17T03:01:19Z + +[Term] +id: PATO:0002419 +name: eosinophilic +def: "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for eosin dye." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +created_by: gkoutos +creation_date: 2012-12-17T03:02:09Z + +[Term] +id: PATO:0002420 +name: amphiphilic +def: "Having both hydrophilic and hydrophobic (or lipophilic) groups." [wikipedia:http\://en.wiktionary.org/wiki/amphiphilic] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002070 ! affinity +created_by: gkoutos +creation_date: 2012-12-17T03:04:39Z + +[Term] +id: PATO:0002421 +name: cicatricial +def: "Having or resembling the characteristic of a cicatrix - a scar resulting from formation and contraction of fibrous tissue." [mw:http\://www.merriam-webster.com/dictionary/cicatricial] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-12-17T03:08:09Z + +[Term] +id: PATO:0002422 +name: acinar +def: "Pertaining to the individual parts making up an aggregate fruit like a many-lobed \"berry,\" such as a raspberry." [wikipedia:https\://en.wikipedia.org/wiki/Acinus] +comment: Acinus is Latin for berry. +subset: mpath_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2012-12-17T03:11:10Z + +[Term] +id: PATO:0002423 +name: papillomatous +def: "A round or lobulated protruding form resembling a nipple." [PATOC:MPATH] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2012-12-17T03:13:44Z + +[Term] +id: PATO:0002424 +name: divergent from +def: "A positional quality inhering in a bearer by virtue of the bearer's having two or more entities that extend from a common point in different directions." [PATOC:AD] +subset: attribute_slim +subset: relational_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-12-20T11:43:47Z + +[Term] +id: PATO:0002425 +name: exposed +def: "Open to view or not covered by another entity." [PATOC:WD] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2012-12-20T11:47:16Z + +[Term] +id: PATO:0002426 +name: scaphoid +def: "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a boat." [wordnetweb:wordnetweb] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:12:03Z + +[Term] +id: PATO:0002427 +name: knobbled +def: "A surface feature shape having numerous very small circular rounded projections or protuberances." [thefreedictionary.com:thefreedictionary.com] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape +created_by: gkoutos +creation_date: 2013-01-29T09:15:53Z + +[Term] +id: PATO:0002428 +name: tripodal +def: "A 3-D shape with three supports or legs." [PATOC:WC] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:18:44Z + +[Term] +id: PATO:0002429 +name: x-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter X." [PATOC:WC] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:19:53Z + +[Term] +id: PATO:0002430 +name: strap-shaped +def: "A shape quality in which the bearer is shaped like a narrow band; ligulate." [thefreedictionary:thefreedictionary] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:21:17Z + +[Term] +id: PATO:0002431 +name: waisted +def: "A shape quality in which the bearer possesses a gradual, yet distinct, thinning from a wide starting point." [PATOC:WC] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:24:46Z + +[Term] +id: PATO:0002432 +name: spade-shaped +def: "A shape that is in the form of a spade." [PATOC:WC] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T09:26:49Z + +[Term] +id: PATO:0002433 +name: sculpted surface +def: "A surface feature shape marked by large amounts of relief, often with multiple ridges and grooves in close association. Topographically complex." [PATOC:AD] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape +created_by: gkoutos +creation_date: 2013-01-29T09:27:55Z + +[Term] +id: PATO:0002434 +name: perpendicular to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity." [PATOC:WC] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-01-29T09:29:55Z + +[Term] +id: PATO:0002435 +name: abutting +def: "A positional quality inhering in a bearer by virtue of the bearer touching another entity along a border or with a projecting part." [merriam-webster:merriam-webster] +subset: relational_slim +subset: scalar_slim +subset: value_slim +synonym: "abut" EXACT [] +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-01-29T09:31:12Z + +[Term] +id: PATO:0002436 +name: offset +def: "A positional quality inhering in a bearer by virtue of the bearer's position being displaced from a reference point." [PATOC:AD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-01-29T09:32:22Z + +[Term] +id: PATO:0002437 +name: interlocked with +def: "A structural quality inhering in a bearer by virtue of the bearer's being locked together or interconnected to another entity." [merriam-webster:merriam-webster] +subset: relational_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-01-29T09:37:13Z + +[Term] +id: PATO:0002438 +name: subdermal +def: "A structural quality inhering in a bearer by virtue of the bearer's being located or placed beneath the skin." [thefreedictionary:thefreedictionary] +subset: value_slim +synonym: "subcutaneous" EXACT [] +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-01-29T09:41:50Z + +[Term] +id: PATO:0002439 +name: w-shaped +def: "An angular shape quality inhering in a bearer by virtue of the bearer's having two angles in its length giving the bearer the form of the letter W." [PATOC:WC] +subset: value_slim +is_a: PATO:0001977 ! angular +created_by: gkoutos +creation_date: 2013-01-29T09:45:54Z + +[Term] +id: PATO:0002440 +name: ornamentation +def: "A surface feature shape quality inhering in a bearer by virtue of the degree of the bearer's highly topographical with ridges, pits, rugosity or other surface structures." [PATOC:GVG] +subset: disposition_slim +is_a: PATO:0001925 ! surface feature shape +created_by: gkoutos +creation_date: 2013-01-29T10:57:42Z + +[Term] +id: PATO:0002441 +name: ornamented +def: "A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures." [PATOC:AD] +subset: value_slim +is_a: PATO:0002440 ! ornamentation +relationship: is_opposite_of PATO:0002442 ! unornamented +created_by: gkoutos +creation_date: 2013-01-29T10:59:42Z + +[Term] +id: PATO:0002442 +name: unornamented +def: "A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures." [PATOC:AD] +subset: value_slim +is_a: PATO:0002440 ! ornamentation +relationship: is_opposite_of PATO:0002441 ! ornamented +created_by: gkoutos +creation_date: 2013-01-29T11:00:20Z + +[Term] +id: PATO:0002443 +name: level with +def: "A positional quality inhering in a bearer by virtue of the bearer's being located at the same level as another entity." [PATOC:NI] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-01-29T11:01:46Z + +[Term] +id: PATO:0002444 +name: mineralized +def: "A composition quality inhering in a bearer by virtue of the bearer's being composed of or possessing inorganic material." [PATOC:WC] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: gkoutos +creation_date: 2013-01-29T11:03:49Z + +[Term] +id: PATO:0002445 +name: torsioned +def: "A shape quality inhering in a bearer by virtue of the bearer's being twisted or turned." [freedictionary:freedictionary] +comment: The word "torsion" has multiple different meanings in different context (e.g. the act of twisting or the morphology of the digestive tract in gastropods). This term refers purely to the resulting shape and is not to be used in the engineering and mechanics sense of torsion. \nNote: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', but it is different in that something that is kinked has sharp twists or turns. +synonym: "twisted" EXACT [] +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T11:05:26Z + +[Term] +id: PATO:0002446 +name: anchor-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an anchor." [PATOC:WC] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-01-29T11:07:17Z + +[Term] +id: PATO:0002447 +name: quadripartite +def: "A shape quality inhering in a bearer by virtue of the bearer being divided into four parts." [PATOC:WC] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: gkoutos +creation_date: 2013-01-29T11:08:28Z + +[Term] +id: PATO:0002448 +name: oriented towards +def: "A quality inhering in a bearer by virtue of the bearer's being aligned or positioned towards another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-02-16T02:57:06Z + +[Term] +id: PATO:0002449 +name: posteromedial to +def: "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and mid-line surface of an organism relative to another entity." [PATOC:WC] +subset: relational_slim +subset: value_slim +is_a: PATO:0001633 ! posterior to +created_by: gkoutos +creation_date: 2013-02-16T03:00:46Z + +[Term] +id: PATO:0002450 +name: firm +def: "A hardness quality of giving significant resistance to pressure." [PATOC:CM] +subset: value_slim +is_a: PATO:0000048 ! hardness +created_by: gkoutos +creation_date: 2013-02-26T02:02:38Z + +[Term] +id: PATO:0002451 +name: sexually dimorphic +def: "A quality inhering in a bearer by virtue of the bearer's exhibiting a phenotypic difference between males and females of the same species." [PATOC:WC] +subset: value_slim +is_a: PATO:0001995 ! organismal quality +created_by: gkoutos +creation_date: 2013-03-11T09:22:04Z + +[Term] +id: PATO:0002452 +name: decondensed +def: "A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed." [PATOC:JL] +subset: value_slim +is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0001485 ! condensed +created_by: gkoutos +creation_date: 2013-04-08T08:43:31Z + +[Term] +id: PATO:0002453 +name: eroding +def: "A structural quality inhering in a bearer by virtue of the bearer bring gradually worn away." [PATOC:JL] +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-04-08T08:45:08Z + +[Term] +id: PATO:0002454 +name: carpel-like +def: "A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a carpel." [PATO:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:00:28Z + +[Term] +id: PATO:0002455 +name: corymb-like +def: "A quality inhering in a bearer by virtue of the bearer's architecture bearing resemblence to a corymb type of inflorescence." [PATOC:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:01:02Z + +[Term] +id: PATO:0002456 +name: inflorescence-like +def: "A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of an inflorescence." [PATOC:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:02:05Z + +[Term] +id: PATO:0002457 +name: leaf-like +def: "A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a leaf." [PATOC:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:02:58Z + +[Term] +id: PATO:0002458 +name: pin-like +def: "A quality inhering in a bearer by virtue of the bearer being thin and lacking outgrowths." [PATOC:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:03:56Z + +[Term] +id: PATO:0002459 +name: sepal-like +def: "A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a sepal," [PATOC:JL] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-04-09T06:04:36Z + +[Term] +id: PATO:0002460 +name: shriveled +def: "A structural quality inhering in a bearer by virtue of the bearer being smaller and contracted, expecially due to loss of moisture." [PATOC:JL] +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-04-09T06:05:18Z + +[Term] +id: PATO:0002461 +name: wilty +def: "To bend or hang downwards due to loss of water" [] +subset: value_slim +is_a: PATO:0002165 ! drooping +created_by: gkoutos +creation_date: 2013-04-09T06:06:14Z + +[Term] +id: PATO:0002462 +name: collagenous +def: "A composition quality inhering in an bearer by virtue of the bearer's consisting of collagen." [PATOC:WD] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: gkoutos +creation_date: 2013-09-15T11:34:15Z + +[Term] +id: PATO:0002463 +name: extends to +def: "A positional quality inhering in a bearer by virtue of some aspect of the bearer extending to the position of another entity." [PATOC:WD] +subset: relational_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-09-15T11:41:00Z + +[Term] +id: PATO:0002464 +name: extends beyond +def: "A positional quality inhering in a bearer by virtue of some aspect of the bearer extending past the position of another entity." [PATOC:WD] +subset: relational_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-09-15T11:42:15Z + +[Term] +id: PATO:0002465 +name: prism shaped +def: "A quality inhering in a bearer by virtue of the bearer's resembling a prism." [] +subset: value_slim +synonym: "tent shaped" RELATED [] +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-09-15T11:44:03Z + +[Term] +id: PATO:0002466 +name: keyhole shaped +def: "A shape quality inhering in a bearer by virtue of the bearer resembling a keyhole." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-09-15T11:45:53Z + +[Term] +id: PATO:0002467 +name: lathlike +def: "A shape quality inhering in a bearer by virtue of the bearer resembling a thin narrow strip." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-09-15T11:47:11Z + +[Term] +id: PATO:0002468 +name: distensible +def: "A structure quality inhering in a bearer by virtue of the bearer's being capable of swelling or stretching." [PATOC:WD] +subset: value_slim +is_a: PATO:0015008 ! distensibility +created_by: gkoutos +creation_date: 2013-09-15T11:48:26Z + +[Term] +id: PATO:0002469 +name: sutured to +def: "Structural quality inhereing in a bearer in which a joint has apposed bony surfaces united by fibrous tissue, permitting no movement; found only between bones." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-09-15T11:55:50Z + +[Term] +id: PATO:0002470 +name: transformed to +def: "A morphological quality between two bearers inhering that one bearer is subject to change the nature, function, or condition of itself to become the other." [PATOC:LC] +subset: relational_slim +subset: value_slim +is_a: PATO:0000051 ! morphology +created_by: gkoutos +creation_date: 2013-09-15T12:01:57Z + +[Term] +id: PATO:0002471 +name: increased velocity +def: "A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position." [PATOC:NV] +subset: value_slim +is_a: PATO:0002242 ! velocity +is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0002242 ! velocity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002472 ! decreased velocity +created_by: gkoutos +creation_date: 2013-09-15T12:03:45Z + +[Term] +id: PATO:0002472 +name: decreased velocity +def: "A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position." [PATOC:NV] +subset: value_slim +is_a: PATO:0002242 ! velocity +is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0002242 ! velocity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002471 ! increased velocity +created_by: gkoutos +creation_date: 2013-09-15T12:05:06Z + +[Term] +id: PATO:0002473 +name: neoplastic, spontaneous +def: "A disposition inhering in a tumour by virtue of the bearer's disposition to spontaneously arise." [PATOC:NV] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002011 ! neoplastic +created_by: gkoutos +creation_date: 2013-09-15T12:07:08Z + +[Term] +id: PATO:0002474 +name: bitter +def: "A flavor quality inhering in a bearer by virtue of the bearer's having an acrid, sharp, or disagreeable flavor." [PATOC:LC] +subset: value_slim +is_a: PATO:0001329 ! flavourful +created_by: gkoutos +creation_date: 2013-09-15T12:09:15Z + +[Term] +id: PATO:0002475 +name: subterminal +def: "A position quality inhering in a bearer by virtue of the bearer's existing near the end of another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-09-15T12:17:41Z + +[Term] +id: PATO:0002476 +name: terminal +def: "A position quality inhering in a bearer by virtue of the bearer's forming the end of another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-09-15T12:18:08Z + +[Term] +id: PATO:0002477 +name: brittle +def: "A structural quality inhering in a bearer by virtue of the bearer's disposition to breaks without significant deformation (strain) when subjected to stress." [wikipedia:http\://en.wikipedia.org/wiki/Brittleness] +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: gkoutos +creation_date: 2013-09-15T12:25:03Z + +[Term] +id: PATO:0002478 +name: transversely striated +def: "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented transversely relative to the long axis of the bearer." [PATOC:DS] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001410 ! striated +created_by: gkoutos +creation_date: 2013-09-15T12:29:15Z + +[Term] +id: PATO:0002479 +name: obliquely striated +def: "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented obliquely relative to the long axis of the bearer." [PATOC:DS] +subset: cell_quality +subset: mpath_slim +subset: value_slim +is_a: PATO:0001410 ! striated +created_by: gkoutos +creation_date: 2013-09-15T12:29:42Z + +[Term] +id: PATO:0002480 +name: poorly ossified +def: "A quality inhering in an bearer by virtue of the bearer's possessing only minor levels of ossification." [PATOC:AD] +subset: value_slim +is_a: PATO:0001448 ! ossified +created_by: gkoutos +creation_date: 2013-09-30T05:47:07Z + +[Term] +id: PATO:0002481 +name: oblique orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a slanting direction or position : neither perpendicular nor parallel." [merriam-wester:http\://www.merriam-webster.com/dictionary/oblique] +subset: value_slim +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-09-30T05:49:50Z + +[Term] +id: PATO:0002482 +name: slit-like +def: "Shape quality inhering in a bearer by virtue of the bearer exhibiting a narrow and elongate opening." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-09-30T05:51:39Z + +[Term] +id: PATO:0002483 +name: external to +def: "Positional quality in which an entity is located outside of another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: gkoutos +creation_date: 2013-09-30T06:06:27Z + +[Term] +id: PATO:0002484 +name: inverted-V shaped +def: "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of an inverted letter V." [PATOC:WD] +subset: value_slim +synonym: "chevron shaped" BROAD [] +is_a: PATO:0001977 ! angular +created_by: gkoutos +creation_date: 2013-10-10T03:55:44Z + +[Term] +id: PATO:0002485 +name: parallel-sided +def: "A shape quality inhering in a bearer by virtue of the bearer's possessing two sides that are at the same continuous distance relative to each other." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: gkoutos +creation_date: 2013-10-10T03:58:37Z + +[Term] +id: PATO:0002486 +name: multi-organismal process quality +def: "A quality inhering in a process by virtue of that process having two or more organisms as participants." [PATOC:DS] +subset: attribute_slim +is_a: PATO:0001236 ! process quality +created_by: gkoutos +creation_date: 2013-10-10T04:08:44Z + +[Term] +id: PATO:0002487 +name: single organismal process quality +def: "A quality inhering in a process by virtue of that process having exactly one organism as a participant." [PATOC:DS] +subset: attribute_slim +is_a: PATO:0001236 ! process quality +created_by: gkoutos +creation_date: 2013-10-10T04:09:51Z + +[Term] +id: PATO:0002488 +name: overlapping +def: "Overlap with quality inhering in a bearer by virtue of the bearer's being positioned over another entity so as to cover some portion of it." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0001590 ! overlap with +created_by: gkoutos +creation_date: 2013-10-10T04:12:22Z + +[Term] +id: PATO:0002489 +name: overlapped by +def: "Overlap with quality inhering in a bearer by virtue of the bearer's being positioned under another entity so as to be covered by some portion of it." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0001590 ! overlap with +created_by: gkoutos +creation_date: 2013-10-10T04:13:04Z + +[Term] +id: PATO:0002490 +name: anterior orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteriorly." [PATOC:WD] +subset: value_slim +synonym: "anteriorly directly" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:11:26Z + +[Term] +id: PATO:0002491 +name: anterodorsal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally." [PATOC:WD] +subset: value_slim +synonym: "anterodorsally directed" EXACT [] +is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002526 ! anterodistal orientation +created_by: gkoutos +creation_date: 2013-10-10T05:12:15Z + +[Term] +id: PATO:0002492 +name: anterolateral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterolaterally." [PATOC:WD] +subset: value_slim +synonym: "anterolaterally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:13:17Z + +[Term] +id: PATO:0002493 +name: anteroventral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteroventrally." [PATOC:WD] +subset: value_slim +synonym: "anteroventrally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:13:55Z + +[Term] +id: PATO:0002494 +name: distal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distally." [PATOC:WD] +subset: value_slim +synonym: "distally directed" EXACT [] +is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002495 ! dorsal orientation +created_by: gkoutos +creation_date: 2013-10-10T05:14:37Z + +[Term] +id: PATO:0002495 +name: dorsal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally." [PATOC:WD] +subset: value_slim +synonym: "dorsally directed" EXACT [] +is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002494 ! distal orientation +created_by: gkoutos +creation_date: 2013-10-10T05:15:24Z + +[Term] +id: PATO:0002496 +name: dorsolateral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsolaterally." [PATOC:WD] +subset: value_slim +synonym: "dorsolaterally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:16:04Z + +[Term] +id: PATO:0002497 +name: lateral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed laterally." [PATOC:WD] +subset: value_slim +synonym: "laterally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:16:45Z + +[Term] +id: PATO:0002498 +name: medial orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed medially." [PATOC:WD] +subset: value_slim +synonym: "medially directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:17:30Z + +[Term] +id: PATO:0002499 +name: posterior orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteriorly." [PATOC:WD] +subset: value_slim +synonym: "posteriorly directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:18:21Z + +[Term] +id: PATO:0002500 +name: ventrolaterally orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrolaterally." [PATOC:WD] +subset: value_slim +synonym: "ventrolaterally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:19:16Z + +[Term] +id: PATO:0002501 +name: ventral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrally." [PATOC:WD] +subset: value_slim +synonym: "ventrally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:19:22Z + +[Term] +id: PATO:0002502 +name: transverse orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed transversely." [PATOC:WD] +subset: value_slim +synonym: "transversely oriented" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:19:25Z + +[Term] +id: PATO:0002503 +name: posterolateral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterolaterally." [PATOC:WD] +subset: value_slim +synonym: "posterolaterally directed" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: gkoutos +creation_date: 2013-10-10T05:19:28Z + +[Term] +id: PATO:0002504 +name: posterodorsal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally." [PATOC:WD] +subset: value_slim +synonym: "posterodorsally directed" EXACT [] +is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002527 ! posterodistal orientation +created_by: gkoutos +creation_date: 2013-10-10T05:19:36Z + +[Term] +id: PATO:0002505 +name: nucleated +def: "A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus." [PATOC:GVG] +subset: mpath_slim +subset: value_slim +is_a: PATO:0001404 ! nucleate quality +created_by: gkoutos +creation_date: 2013-10-21T05:44:34Z + +[Term] +id: PATO:0002506 +name: alobate +def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's not having undulating edges forming lobes." [PATOC:DOS] +subset: value_slim +is_a: PATO:0001925 ! surface feature shape +created_by: gkoutos +creation_date: 2013-10-25T04:42:40Z + +[Term] +id: PATO:0002507 +name: keratinous +def: "A composition quality inhering in a bearer by virtue of the bearer's consisting of keratin." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000025 ! composition +created_by: segerdel +creation_date: 2014-02-04T12:38:14Z + +[Term] +id: PATO:0002508 +name: concealed +def: "A positional quality inhering in a bearer by virtue of the bearer being hidden from view." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-04T01:30:21Z + +[Term] +id: PATO:0002509 +name: hexagonal +def: "A 2-D shape quality inhering in a bearer by virtue of the bearer's having six angles and six sides." [Merriam-Webster:hexagonal] +subset: value_slim +is_a: PATO:0002006 ! 2-D shape +created_by: segerdel +creation_date: 2014-02-04T01:50:05Z + +[Term] +id: PATO:0002510 +name: multipartite +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer being divided into multiple parts." [PATOC:EJS] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape +created_by: segerdel +creation_date: 2014-02-06T01:15:28Z + +[Term] +id: PATO:0002511 +name: cane-like +def: "A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a cane." [PATOC:EJS] +subset: value_slim +synonym: "cane-shaped" RELATED [] +is_a: PATO:0000052 ! shape +created_by: segerdel +creation_date: 2014-02-06T02:04:35Z + +[Term] +id: PATO:0002512 +name: confluent with +def: "A positional quality inhering in a bearer by virtue of the bearer flowing or coming together with another entity." [Merriam-Webster:confluent] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-06T02:28:39Z + +[Term] +id: PATO:0002513 +name: oblique to +def: "A positional quality inhering in a bearer by virtue of the bearer's having a slanting direction (neither perpendicular nor parallel) relative to another entity." [PATOC:EJS] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-06T02:54:16Z + +[Term] +id: PATO:0002514 +name: anteromedial orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteromedially." [PATOC:EJS] +subset: value_slim +synonym: "medioanterior orientation" EXACT [] +is_a: PATO:0000133 ! orientation +created_by: segerdel +creation_date: 2014-02-07T12:59:10Z + +[Term] +id: PATO:0002515 +name: increased elevation relative to +def: "An elevation quality inhering in a bearer by virtue the bearer's being in a high position relative to another entity." [PATOC:EJS] +subset: relational_slim +subset: value_slim +is_a: PATO:0001687 ! elevation +created_by: segerdel +creation_date: 2014-02-07T01:12:48Z + +[Term] +id: PATO:0002516 +name: concealed by +def: "A positional quality inhering in a bearer by virtue of the bearer being hidden from view or covered by another entity." [PATOC:EJS] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-10T01:13:53Z + +[Term] +id: PATO:0002517 +name: saddle-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a saddle." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: segerdel +creation_date: 2014-02-10T01:23:13Z + +[Term] +id: PATO:0002518 +name: flush +def: "A positional quality inhering in a bearer by virtue of the bearer being level or even with another surface." [WordReference:flush] +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-10T01:26:50Z + +[Term] +id: PATO:0002519 +name: cancellous +def: "A structural quality inhering in a bearer by virtue of the bearer's having an open, latticed, or porous structure; used especially of bone." [TheFreeDictionary:cancellous] +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: segerdel +creation_date: 2014-02-10T01:33:14Z + +[Term] +id: PATO:0002520 +name: scute-like +def: "A shape quality inhering in a bearer by virtue of the bearer being shaped like a scute or an osteoderm." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: segerdel +creation_date: 2014-02-10T01:37:47Z + +[Term] +id: PATO:0002521 +name: funnel-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a funnel." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: segerdel +creation_date: 2014-02-10T01:40:05Z + +[Term] +id: PATO:0002522 +name: keel-shaped +def: "A shape quality inhering in a bearer by virtue of the bearer having an elongate structure, similar to a ridge, that extends longitudinally along an anatomical entity." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: segerdel +creation_date: 2014-02-10T01:46:38Z + +[Term] +id: PATO:0002523 +name: vertical to +def: "A positional quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity and to the horizon." [PATOC:EJS] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: segerdel +creation_date: 2014-02-10T02:25:42Z + +[Term] +id: PATO:0002524 +name: mesiolateral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed mesiolaterally." [PATOC:EJS] +subset: value_slim +is_a: PATO:0000133 ! orientation +created_by: segerdel +creation_date: 2014-02-10T02:37:42Z + +[Term] +id: PATO:0002525 +name: separating +def: "A structural quality inhering in a bearer by virtue of the bearer being in a position that produces a separation in, or acting to separate, another entity." [PATOC:EJS] +subset: relational_slim +subset: value_slim +is_a: PATO:0000141 ! structure +created_by: segerdel +creation_date: 2014-02-10T02:48:15Z + +[Term] +id: PATO:0002526 +name: anterodistal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally." [PATOC:EJS] +synonym: "antero-distal orientation" EXACT [] +is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002491 ! anterodorsal orientation +created_by: segerdel +creation_date: 2014-03-11T11:28:39Z + +[Term] +id: PATO:0002527 +name: posterodistal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally." [PATOC:EJS] +synonym: "postero-distal orientation" EXACT [] +is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002504 ! posterodorsal orientation +created_by: segerdel +creation_date: 2014-03-11T11:29:22Z + +[Term] +id: PATO:0002528 +name: obsolete borderline intensity +comment: obsoleted because the ID was accidentally reused +is_obsolete: true +replaced_by: PATO:0002628 + +[Term] +id: PATO:0002529 +name: obsolete profound intensity +comment: obsoleted because the ID was accidentally reused +is_obsolete: true +replaced_by: PATO:0002629 + +[Term] +id: PATO:0002530 +name: obsolete episodic +comment: obsoleted because the ID was accidentally reused +is_obsolete: true +replaced_by: PATO:0002630 + +[Term] +id: PATO:0002531 +name: obsolete refractory +comment: obsoleted because the ID was accidentally reused +is_obsolete: true +replaced_by: PATO:0002631 + +[Term] +id: PATO:0002532 +name: obsolete secondary +comment: obsoleted because the ID was accidentally reused +is_obsolete: true +replaced_by: PATO:0002632 + +[Term] +id: PATO:0002533 +name: bipartite +def: "A multipartite quality inhering in a bearer by virtue of the bearer being divided into two parts." [PATOC:WD] +subset: value_slim +is_a: PATO:0002510 ! multipartite +created_by: wasila.dahdul +creation_date: 2014-08-12T11:12:13Z + +[Term] +id: PATO:0002534 +name: plowshare shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a plowshare." [PATOC:WD] +subset: value_slim +synonym: "plow-share shaped" EXACT [] +xref: Image:http\://2.bp.blogspot.com/_TbkIC-eqFNM/S66IJ3omNWI/AAAAAAAAFSk/pzThLJPvYZw/s1600/ard-detail.gif +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-08-12T11:23:12Z + +[Term] +id: PATO:0002535 +name: peg-like +def: "A shape quality inhering in a bearer by virtue of the bearer's having a short and stout cylindrical shape." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-08-12T11:30:08Z + +[Term] +id: PATO:0002536 +name: boomerang shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a boomerang, with two arms connected at an angle." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-08-12T11:32:16Z + +[Term] +id: PATO:0002537 +name: subovoid +def: "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a shape not quite ovoid. approximately ovoid." [merriam-webster:http\://www.merriam-webster.com/dictionary/subovoid] +subset: value_slim +is_a: PATO:0001865 ! spheroid +created_by: wasila.dahdul +creation_date: 2014-08-12T11:51:38Z + +[Term] +id: PATO:0002538 +name: concavo-convex +def: "A shape quality that obtains by virtue of the bearer being concave on one side and convex on the other." [merriam-webster:http\://www.merriam-webster.com/dictionary/concavo-convex] +subset: value_slim +synonym: "concavoconvex" EXACT [] +is_a: PATO:0002005 ! concavity +created_by: wasila.dahdul +creation_date: 2014-08-12T11:56:13Z + +[Term] +id: PATO:0002539 +name: ring shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a ring (a circular shape enclosing a space)." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-08-12T12:01:56Z + +[Term] +id: PATO:0002540 +name: spur shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's possessing a small, spike-like shape." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-08-12T12:07:44Z + +[Term] +id: PATO:0002541 +name: homeostatic +def: "Pertaining to the ability or tendency of an organism or cell to maintain internal equilibrium by adjusting its physiological processes." [GO:0042592] +is_a: PATO:0001995 ! organismal quality +created_by: haendel +creation_date: 2014-12-01T16:07:28Z + +[Term] +id: PATO:0002628 +name: borderline intensity +def: "An intensity which is borderline in it its effect or force as compared to baseline or normal." [] +subset: hpo_slim +is_a: PATO:0000049 ! intensity +created_by: haendel +creation_date: 2014-05-26T06:42:21Z + +[Term] +id: PATO:0002629 +name: profound intensity +def: "An intensity which is characterized by being very severe." [PATO:MAH] +subset: hpo_slim +is_a: PATO:0000049 ! intensity +created_by: haendel +creation_date: 2014-05-26T06:44:11Z + +[Term] +id: PATO:0002630 +name: episodic +def: "An occurrence quality inhering in a bearer by virtue of the bearer's having a course that occurs occasionally." [PATO:MAH] +subset: hpo_slim +is_a: PATO:0000057 ! occurrence +created_by: haendel +creation_date: 2014-05-26T06:50:16Z + +[Term] +id: PATO:0002631 +name: refractory +def: "An occurrence of a process during which time there is an inability to change the course, extent, or repetition of the process." [PATO:MAH] +subset: hpo_slim +is_a: PATO:0000057 ! occurrence +created_by: haendel +creation_date: 2014-05-26T13:09:29Z + +[Term] +id: PATO:0002632 +name: secondary +def: "A quality in which the effect or outcome is not primary or the focus of the observation." [PATO:MAH] +subset: hpo_slim +is_a: PATO:0000068 ! qualitative +created_by: haendel +creation_date: 2014-05-26T13:17:45Z + +[Term] +id: PATO:0005000 +name: hemispheroid +def: "A 3-D shape that is half of a sphere." [PATOC:WD] +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:25:08Z + +[Term] +id: PATO:0005001 +name: variability of count +def: "A variability quality inhering in the bearer by virtue of the bearer having a variable number or count of an entity." [PATOC:WD] +subset: value_slim +synonym: "variable number" RELATED [] +is_a: PATO:0001303 ! variability +relationship: towards PATO:0000070 ! amount +created_by: wasila.dahdul +creation_date: 2014-09-09T12:27:33Z + +[Term] +id: PATO:0005002 +name: pear shaped +def: "Having the shape of a pear; tapering near the top and bulging toward the base or bottom. From thefreedictionary.com" [PATOC:WD] +subset: value_slim +is_a: PATO:0002007 ! convex 3-D shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:30:02Z + +[Term] +id: PATO:0005003 +name: paddle shaped +def: "A quality inhering in a bearer by virtue of the bearer's resembling the form of a paddle." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:34:45Z + +[Term] +id: PATO:0005004 +name: subelliptical +def: "A shape that is almost an ellipse." [PATOC:WD] +subset: value_slim +is_a: PATO:0002318 ! superelliptic +created_by: wasila.dahdul +creation_date: 2014-09-09T12:36:15Z + +[Term] +id: PATO:0005005 +name: radiating +def: "Shape quality inhering in a bearer expanding outward, or having parts expanding outward, from a center point." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:37:27Z + +[Term] +id: PATO:0005006 +name: differentiated from +def: "A morphology quality inhering in a bearer by virtue of the bearer's being morphologically distinguishable from another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +synonym: "distinct from" EXACT [] +is_a: PATO:0000051 ! morphology +created_by: wasila.dahdul +creation_date: 2014-09-09T12:40:57Z + +[Term] +id: PATO:0005007 +name: hypsodont +def: "A 3-D shape inhering in a bearer by virtue of the bearer's having dentition characterized by high-crowned teeth and enamel which extends far past the gum line, which provides extra material for wear and tear." [DOI:10.1111/j.1469-185X.2011.00176.x] +comment: Need to include axiom: hypsodont inheres_in some ('tooth crown' and bearer_of 'increased \nheight'). +subset: value_slim +is_a: PATO:0002266 ! 3-D shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:58:01Z + +[Term] +id: PATO:0005008 +name: brachydont +def: "A 3-D shape inhering in a bearer by virtue of the bearer's having dentition characterized by low-crowned teeth. Human teeth are brachydont." [DOI:10.1111/j.1469-185X.2011.00176.x] +comment: Need to include axiom: brachydont inheres_in some ('tooth crown' and bearer_of 'decreased \nheight'). +subset: value_slim +is_a: PATO:0002266 ! 3-D shape +created_by: wasila.dahdul +creation_date: 2014-09-09T12:59:35Z + +[Term] +id: PATO:0005009 +name: molariform +def: "A 3-D shape inhering in a bearer by virtue of the bearer's having an entity in the form of a molar tooth." [PATOC:WD] +subset: value_slim +is_a: PATO:0002266 ! 3-D shape +created_by: wasila.dahdul +creation_date: 2014-09-09T13:03:00Z + +[Term] +id: PATO:0005010 +name: plumose +def: "A branched quality inhering in a bearer by virtue of the bearer's having many fine filaments or branches that give a feathery appearance: for example, resembling a feather." [www.oxforddictionaries.com:http\://www.oxforddictionaries.com/us/definition/american_english/plumose] +subset: value_slim +is_a: PATO:0000402 ! branched +created_by: wasila.dahdul +creation_date: 2014-09-25T15:03:17Z + +[Term] +id: PATO:0005011 +name: continuous with +def: "A positional quality inhering in a bearer by virtue of the bearer possessing an uninterrupted or unbroken connection or spatial distribution relative to the position of another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +is_a: PATO:0000140 ! position +created_by: wasila.dahdul +creation_date: 2014-09-25T15:07:34Z + +[Term] +id: PATO:0005012 +name: complete structure +def: "A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts." [PATOC:WD] +subset: value_slim +is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0005013 ! incomplete structure +created_by: wasila.dahdul +creation_date: 2014-09-25T15:11:47Z + +[Term] +id: PATO:0005013 +name: incomplete structure +def: "A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities." [PATOC:WD] +subset: value_slim +is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0005012 ! complete structure +created_by: wasila.dahdul +creation_date: 2014-09-25T15:12:35Z + +[Term] +id: PATO:0005014 +name: subspherical +def: "A spheroid shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, spherical." [PATOC:WD] +subset: value_slim +is_a: PATO:0001865 ! spheroid +created_by: wasila.dahdul +creation_date: 2014-09-25T15:16:25Z + +[Term] +id: PATO:0005015 +name: tapered size +def: "A size quality inhering in an entity or set of entities in which size increases or decreases along the extent of the entity or set." [PATOC:WD] +subset: value_slim +synonym: "gradient of size" EXACT [] +is_a: PATO:0000117 ! size +created_by: wasila.dahdul +creation_date: 2014-09-25T15:17:51Z + +[Term] +id: PATO:0005016 +name: surrounded by +def: "A positional quality inhering in a bearer by virtue of the bearer's being enclosed on all sides by another entity." [PATOC:WD] +subset: relational_slim +subset: value_slim +synonym: "enclosed by" EXACT [] +is_a: PATO:0000140 ! position +created_by: wasila.dahdul +creation_date: 2014-09-25T15:20:55Z + +[Term] +id: PATO:0005017 +name: labiolingually compressed +def: "A quality inhering in a bearer by virtue of the bearer's being compressed from the side facing the lips to the side facing the tongue." [PATOC:WD] +subset: value_slim +is_a: PATO:0002254 ! flattened +created_by: wasila.dahdul +creation_date: 2014-10-02T11:52:09Z + +[Term] +id: PATO:0005018 +name: mesiodistally compressed +def: "A quality inhering in a bearer by virtue of the bearer's being compressed from the side facing the midline of the jaw to the side opposite the midline." [PATOC:WD] +subset: value_slim +is_a: PATO:0002254 ! flattened +created_by: wasila.dahdul +creation_date: 2014-10-02T11:53:52Z + +[Term] +id: PATO:0005019 +name: curved lingually +def: "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the tongue." [PATOC:WD] +subset: value_slim +is_a: PATO:0000406 ! curved +created_by: wasila.dahdul +creation_date: 2014-10-02T12:01:16Z + +[Term] +id: PATO:0005020 +name: irregularly shaped +def: "A shape quality inhering on a bearer by virtue of a bearer's shape lacking in pattern or uniformity; for example, it may have sides of different lengths, different curvatures, or unequal angles." [PATOC:WD] +subset: value_slim +is_a: PATO:0000052 ! shape +created_by: wasila.dahdul +creation_date: 2014-10-03T10:23:17Z + +[Term] +id: PATO:0005021 +name: unicuspidate +def: "Cuspidate quality inhering in a bearer by virtue of the bearer's possessing a single cusp." [PATOC:WD] +subset: value_slim +is_a: PATO:0001973 ! cuspidate +created_by: wasila.dahdul +creation_date: 2014-10-17T14:14:04Z + +[Term] +id: PATO:0005022 +name: uniform diameter +def: "A diameter that remains constant throughout the extent of an entity." [PATOC:WD] +subset: value_slim +is_a: PATO:0001334 ! diameter +created_by: wasila.dahdul +creation_date: 2014-10-17T14:15:59Z + +[Term] +id: PATO:0005023 +name: parasagittal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is in the parasagittal plane." [PATOC:WD] +subset: value_slim +is_a: PATO:0000133 ! orientation +created_by: wasila.dahdul +creation_date: 2014-10-17T14:21:30Z + +[Term] +id: PATO:0005024 +name: longitudinal orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed along the longitudinal or anterior-posterior axis." [PATOC:WD] +subset: value_slim +is_a: PATO:0000133 ! orientation +created_by: wasila.dahdul +creation_date: 2014-10-17T14:24:19Z + +[Term] +id: PATO:0010000 +name: maximally connected +def: "A structural quality inhering in the bearer by virtue of the bearer consisting of a single, maximally connected structure." [GOC:dos] +comment: What counts as maximally connected may be relative to some specification of granularity. +is_a: PATO:0000141 ! structure +created_by: davidos +creation_date: 2014-12-12T08:41:11Z + +[Term] +id: PATO:0010001 +name: disconnected +def: "A structural quality inhering in the bearer by virtue of the bearer consisting of multiple structures lacking any physical connection to each other." [GOC:dos] +is_a: PATO:0000141 ! structure +created_by: davidos +creation_date: 2014-12-12T08:43:17Z + +[Term] +id: PATO:0010002 +name: propagation velocity +def: "The velocity of spatial propagation of a process. Examples include the velocity of propagation of an action potential along an axon." [orcid:0000-0002-7073-9172] +is_a: PATO:0002062 ! physical quality of a process +created_by: dos +creation_date: 2019-07-18T18:24:15Z + +[Term] +id: PATO:0010003 +name: increased propagation velocity +def: "A propagation velocity that is higher than normal." [orcid:0000-0002-7073-9172] +is_a: PATO:0010002 ! propagation velocity +intersection_of: PATO:0010002 ! propagation velocity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +created_by: dos +creation_date: 2019-07-18T18:24:25Z + +[Term] +id: PATO:0010004 +name: decreased propagation velocity +def: "A propagation velocity that is lower than normal." [orcid:0000-0002-7073-9172] +intersection_of: PATO:0010002 ! propagation velocity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +created_by: dos +creation_date: 2019-07-18T18:24:36Z + +[Term] +id: PATO:0010005 +name: spatial distribution of a process +def: "A physical quality of a process that is its spatial distribution. For example, bone mineralization follows stereotypical spatial distribution patterns during development, which may be altered in some phenotypes." [orcid:0000-0002-7073-9172] +subset: attribute_slim +is_a: PATO:0002062 ! physical quality of a process +created_by: dos +creation_date: 2019-07-18T18:49:08Z + +[Term] +id: PATO:0015001 +name: absence due to degeneration +def: "Absence due to a degenerative process." [PATOC:PortlandMeetingFeb2015] +subset: absent_slim +subset: value_slim +is_a: PATO:0000462 ! absent +is_a: PATO:0000639 ! degenerate +intersection_of: PATO:0000462 ! absent +intersection_of: PATO:0000639 ! degenerate +created_by: cjm + +[Term] +id: PATO:0015002 +name: process efficacy +def: "The ability of a process to produce its output." [PATOC:PortlandMeetingFeb2015] +subset: attribute_slim +is_a: PATO:0001236 ! process quality +created_by: cjm + +[Term] +id: PATO:0015003 +name: decreased efficacy +def: "A decrease in the ability of a process to produce its output." [PATOC:PortlandMeetingFeb2015] +subset: value_slim +is_a: PATO:0015002 ! process efficacy +intersection_of: PATO:0015002 ! process efficacy +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015004 ! increased efficacy +created_by: cjm + +[Term] +id: PATO:0015004 +name: increased efficacy +def: "A increase in the ability of a process to produce its output." [PATOC:PortlandMeetingFeb2015] +subset: value_slim +is_a: PATO:0015002 ! process efficacy +intersection_of: PATO:0015002 ! process efficacy +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015003 ! decreased efficacy +created_by: cjm + +[Term] +id: PATO:0015005 +name: tendrilous +def: "Slender and spirally coiled." [https://en.wiktionary.org/wiki/tendril] +subset: value_slim +synonym: "tendril-like" RELATED [] +synonym: "tendril-shaped" RELATED [] +synonym: "tendrilled" BROAD [] +is_a: PATO:0000052 ! shape +relationship: has_part PATO:0000404 ! coiled +relationship: has_part PATO:0002212 ! slender + +[Term] +id: PATO:0015006 +name: polymeric +def: "A quality inhering in a structure by virtue of it consisting of many of repeated, similar or identical subunits, arranged in some orderly array." [GOC:DOS, https://github.com/pato-ontology/pato/issues/78] +comment: A complete coverage of this domain would subclasses homopolymeric, copolymeric, crystalline. +subset: value_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0015007 +name: prominence +def: "A quality inhering in a bearer by virtue of the degree to which the bearers stands out or projects beyond a surface or line." [GOC:CJM] +subset: attribute_slim +is_a: PATO:0000140 ! position + +[Term] +id: PATO:0015008 +name: distensibility +def: "A quality inhering in a bearer by virtue of the extent to which the bearer is capable of being stretched or swollen." [GOC:CJM] +subset: attribute_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0015009 +name: humidity +def: "A quality inhering in air by virtue of the partial pressure exerted by the bearer's water vapour content." [https://github.com/pato-ontology/pato/issues/90] +subset: attribute_slim +is_a: PATO:0001547 ! quality of a gas + +[Term] +id: PATO:0015010 +name: increased humidity +def: "An increase in humidity." [https://github.com/pato-ontology/pato/issues/90] +subset: value_slim +synonym: "humid" RELATED [] +intersection_of: PATO:0015009 ! humidity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015011 ! decreased humidity + +[Term] +id: PATO:0015011 +name: decreased humidity +def: "An decrease in humidity." [https://github.com/pato-ontology/pato/issues/90] +subset: value_slim +intersection_of: PATO:0015009 ! humidity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015010 ! increased humidity + +[Term] +id: PATO:0015012 +name: quality of a plasma +def: "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of roughly equal proportions of positively and negatively charged particles, having neither a defined volume nor defined shape, having internal magnetic fields, and being electrically conductive." [https://github.com/pato-ontology/pato/issues/88] +subset: attribute_slim +is_a: PATO:0001547 ! quality of a gas + +[Term] +id: PATO:0015013 +name: degree of illumination +def: "The degree to which the bearer is exposed to visible light." [https://github.com/pato-ontology/pato/issues/89] +subset: attribute_slim +is_a: PATO:0001291 ! electromagnetic (EM) radiation quality + +[Term] +id: PATO:0015014 +name: increased degree of illumination +def: "An increase in illumination." [https://github.com/pato-ontology/pato/issues/89] +subset: value_slim +synonym: "illuminated" RELATED [] +intersection_of: PATO:0015013 ! degree of illumination +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015015 ! decreased degree of illumination + +[Term] +id: PATO:0015015 +name: decreased degree of illumination +def: "An decrease in illumination." [https://github.com/pato-ontology/pato/issues/89] +subset: value_slim +intersection_of: PATO:0015013 ! degree of illumination +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015014 ! increased degree of illumination + +[Term] +id: PATO:0015016 +name: stepped +def: "Having a shape or form that resembles a step of a stairway (e.g., a ledge or offset margin)." [http://www.thefreedictionary.com/stepped, https://github.com/pato-ontology/pato/issues/82] +subset: value_slim +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0015017 +name: quality of a colloid +def: "A physical quality inhering in an entity by virtue of a portion of the bearer's molecular or polymolecular constituents present in one phase being dispersed in a portion of the bearer's constituents present in another phase." [ENVO:pb, https://github.com/pato-ontology/pato/issues/91, https://goldbook.iupac.org/html/C/C01172.html] +subset: attribute_slim +is_a: PATO:0002198 ! quality of a substance + +[Term] +id: PATO:0015018 +name: quality of an aerosol +def: "A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being suspended in a gas." [ENVO:pb, https://github.com/pato-ontology/pato/issues/91] +subset: attribute_slim +is_a: PATO:0015017 ! quality of a colloid + +[Term] +id: PATO:0015019 +name: C-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter C." [github:mah11, https://github.com/pato-ontology/pato/issues/96] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0015020 +name: J-shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter J." [github:mah11, https://github.com/pato-ontology/pato/issues/96] +subset: value_slim +is_a: PATO:0002008 ! concave 3-D shape + +[Term] +id: PATO:0015021 +name: combustibility +def: "The propensity of a material to undergo combustion. Combustion encompasses smouldering and flaming combustion. Combustibility is usually applied to solids." [https://en.wikipedia.org/wiki/Combustibility, https://github.com/EnvironmentOntology/envo/issues/384] +subset: attribute_slim +is_a: PATO:0001018 ! physical quality + +[Term] +id: PATO:0015022 +name: increased combustibility +def: "An increase in combustibility." [] +subset: value_slim +synonym: "combustible" EXACT [] +intersection_of: PATO:0015021 ! combustibility +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015023 ! decreased combustibility + +[Term] +id: PATO:0015023 +name: decreased combustibility +def: "An decrease in combustibility." [] +subset: value_slim +synonym: "noncombustible" RELATED [] +intersection_of: PATO:0015021 ! combustibility +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015022 ! increased combustibility + +[Term] +id: PATO:0015024 +name: increased porosity +def: "An increase in porosity." [https://github.com/pato-ontology/pato/issues/110] +subset: value_slim +intersection_of: PATO:0000973 ! porosity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal + +[Term] +id: PATO:0015025 +name: decreased porosity +def: "An decrease in porosity." [https://github.com/pato-ontology/pato/issues/110] +subset: value_slim +intersection_of: PATO:0000973 ! porosity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015024 ! increased porosity + +[Term] +id: PATO:0015026 +name: stability +def: "quality, state, or degree of being stable." [https://github.com/pato-ontology/pato/issues/113] +subset: attribute_slim +subset: disposition_slim +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0015027 +name: increased stability +def: "An increase in stability." [https://github.com/pato-ontology/pato/issues/113] +subset: disposition_slim +subset: value_slim +intersection_of: PATO:0015026 ! stability +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal + +[Term] +id: PATO:0015028 +name: decreased stability +def: "A decrease in stability." [https://github.com/pato-ontology/pato/issues/113] +subset: disposition_slim +subset: value_slim +intersection_of: PATO:0015026 ! stability +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015027 ! increased stability + +[Term] +id: PATO:0015029 +name: quality of a suspension +def: "A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being transiently dispersed in a solid, liquid, or gas before settling due to gravity or centrifugal forces." [ENVO:pb, https://github.com/pato-ontology/pato/issues/91] +subset: attribute_slim +is_a: PATO:0002198 ! quality of a substance + +[Term] +id: PATO:0015030 +name: plume-shaped +def: "A shape that ineres in a bearer by virtue of the bearer's mass being distributed in a feather-like fashion." [https://github.com/pato-ontology/pato/issues/122] +subset: value_slim +synonym: "feather-shaped" EXACT [] +synonym: "plumed" EXACT [] +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0020000 +name: genotypic sex +def: "A biological sex quality inhering in an individual based upon genotypic composition of sex chromosomes." [PATOC:MAH] +comment: Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, we have XY, XX, though abnormal XXY, X0, XYY, and other combinations are possible. +is_a: PATO:0000047 ! biological sex +created_by: mah + +[Term] +id: PATO:0020001 +name: male genotypic sex +def: "A biological sex quality inhering in an individual based upon genotypic composition that confers the capability for an organism to differentiate male gonads." [PATOC:MAH] +comment: Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XY, though abnormal XXY and XYY would also result in a male phenotypic outcome. +is_a: PATO:0020000 ! genotypic sex +created_by: mah + +[Term] +id: PATO:0020002 +name: female genotypic sex +def: "A biological sex quality inhering in an individual or a population based upon genotypic composition that confers the capability for an organism to differentiate female gonads." [PATOC:MAH] +comment: Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XX, though abnormal X0 and XXX would also result in a female phenotypic outcome. +is_a: PATO:0020000 ! genotypic sex +created_by: mah + +[Term] +id: PATO:0025000 +name: potability +def: "A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be used as a safe means of hydration." [Wikipedia:https\://en.wikipedia.org/wiki/Drinking_water] +synonym: "drinkability" EXACT [] +is_a: PATO:0001018 ! physical quality +created_by: pbuttigieg +creation_date: 2015-09-01T16:16:44Z + +[Term] +id: PATO:0025001 +name: non-potable +def: "A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration." [Wikipedia:https\://en.wikipedia.org/wiki/Drinking_water] +synonym: "undrinkable" EXACT [] +is_a: PATO:0025000 ! potability +disjoint_from: PATO:0025002 ! potable +relationship: is_opposite_of PATO:0025002 ! potable +created_by: pbuttigieg +creation_date: 2015-09-01T16:18:57Z + +[Term] +id: PATO:0025002 +name: potable +def: "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration." [Wikipedia:https\://en.wikipedia.org/wiki/Drinking_water] +synonym: "drinkable" EXACT [] +is_a: PATO:0025000 ! potability +relationship: is_opposite_of PATO:0025001 ! non-potable +created_by: pbuttigieg +creation_date: 2015-09-01T16:19:02Z + +[Term] +id: PATO:0030000 +name: anterioralized +def: "A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some or all of what are normally posterior structures." [PATOC:EJS] +is_a: PATO:0000646 ! malformed +created_by: segerdel + +[Term] +id: PATO:0030001 +name: dorsalized +def: "A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally dorsal structures and missing some or all of what are normally ventral structures." [PATOC:EJS] +is_a: PATO:0000646 ! malformed +created_by: segerdel + +[Term] +id: PATO:0030002 +name: posterioralized +def: "A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally posterior structures and missing some or all of what are normally anterior structures." [PATOC:EJS] +is_a: PATO:0000646 ! malformed +created_by: segerdel + +[Term] +id: PATO:0030003 +name: ventralized +def: "A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally ventral structures and missing some or all of what are normally dorsal structures." [PATOC:EJS] +is_a: PATO:0000646 ! malformed +created_by: segerdel + +[Term] +id: PATO:0030004 +name: partially anterioralized +def: "An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some but not all of what are normally posterior structures." [PATOC:EJS] +is_a: PATO:0030000 ! anterioralized +created_by: segerdel + +[Term] +id: PATO:0030005 +name: partially dorsalized +def: "A dorsalized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally dorsal structures and missing some but not all of what are normally ventral structures." [PATOC:EJS] +is_a: PATO:0030001 ! dorsalized +created_by: segerdel + +[Term] +id: PATO:0030006 +name: partially posterioralized +def: "A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally posterior structures and missing some but not all of what are normally anterior structures." [PATOC:EJS] +is_a: PATO:0030002 ! posterioralized +created_by: segerdel + +[Term] +id: PATO:0030007 +name: partially ventralized +def: "A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally ventral structures and missing some but not all of what are normally dorsal structures." [PATOC:EJS] +is_a: PATO:0030003 ! ventralized +created_by: segerdel + +[Term] +id: PATO:0040000 +name: heterotaxic +def: "An oriented quality inhering in a bearer by virtue of the bearer's being abnormally placed or arranged." [http://medical-dictionary.thefreedictionary.com/heterotaxic] +is_a: PATO:0000625 ! inverted +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-05-21T22:44:38Z xsd:dateTime + +[Term] +id: PATO:0040001 +name: ring-shaped +def: "Shaped like a ring" [https://orcid.org/0000-0002-6601-2165] +synonym: "annular" EXACT [] +is_a: PATO:0000947 ! elliptic +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T03:56:53Z xsd:dateTime + +[Term] +id: PATO:0040002 +name: originates from +def: "A positional quality inhering in a bearer by virtue of some aspect of that bearer beginning from a position on another entity." [] +subset: relational_slim +is_a: PATO:0000140 ! position +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T04:10:53Z xsd:dateTime + +[Term] +id: PATO:0040003 +name: pathogenicity +def: "The ability of a pathogen to produce an infectious disease or disorder in an another organism." [https://orcid.org/0000-0001-8941-3984] +is_a: PATO:0001995 ! organismal quality +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:24:52Z xsd:dateTime + +[Term] +id: PATO:0040004 +name: plush +def: "A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness." [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0003-4606-0597] +is_a: PATO:0000150 ! texture +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:39:30Z xsd:dateTime + +[Term] +id: PATO:0040005 +name: posteroventral orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally." [https://orcid.org/0000-0003-3162-7490] +synonym: "posteroventrally oriented" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T22:54:16Z xsd:dateTime + +[Term] +id: PATO:0040006 +name: crown like +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown." [https://orcid.org/0000-0003-3162-7490] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:09:59Z xsd:dateTime + +[Term] +id: PATO:0040007 +name: shell shaped +def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell." [https://orcid.org/0000-0003-3162-7490] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:12:47Z xsd:dateTime + +[Term] +id: PATO:0040008 +name: fringed +def: "A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/fringe] +is_a: PATO:0002267 ! edge shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:15:10Z xsd:dateTime + +[Term] +id: PATO:0040009 +name: bowl shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl." [https://orcid.org/0000-0003-3162-7490] +is_a: PATO:0002008 ! concave 3-D shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:17:01Z xsd:dateTime + +[Term] +id: PATO:0040010 +name: mobile relative to +def: "Mobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] +comment: For example, distinct anteroposterior mobility of palatine relative to mesethmoid. +is_a: PATO:0000004 ! mobility +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:20:08Z xsd:dateTime + +[Term] +id: PATO:0040011 +name: immobile relative to +def: "Immobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] +comment: For example: distinct anteroposterior immobility of palatine relative to mesethmoid. +is_a: PATO:0000004 ! mobility +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:21:07Z xsd:dateTime + +[Term] +id: PATO:0040012 +name: plug shaped +def: "A shape that is in the form of a plug, being tube-like and expanded on one end." [https://orcid.org/0000-0003-3162-7490] +synonym: "plug like" EXACT [] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:24:41Z xsd:dateTime + +[Term] +id: PATO:0040013 +name: dorsomedial orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially." [https://orcid.org/0000-0003-3162-7490] +synonym: "dorsomedially directed" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:27:57Z xsd:dateTime + +[Term] +id: PATO:0040014 +name: band shaped +def: "A shape that is in the form of a narrow strip encircling an object." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/band] +synonym: "band like" EXACT [] +synonym: "band-like" EXACT [] +synonym: "strip like" EXACT [] +synonym: "strip-like" EXACT [] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:31:51Z xsd:dateTime + +[Term] +id: PATO:0040015 +name: trough shaped +def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling that of a trough, being narrow, long, and boxlike in shape." [http://www.dictionary.com/browse/trough, https://orcid.org/0000-0003-3162-7490] +synonym: "trough like" EXACT [] +synonym: "trough-like" EXACT [] +synonym: "trough-shaped" EXACT [] +is_a: PATO:0002008 ! concave 3-D shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:35:51Z xsd:dateTime + +[Term] +id: PATO:0040016 +name: pentagonal +def: "A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/pentagonal] +is_a: PATO:0002006 ! 2-D shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:39:48Z xsd:dateTime + +[Term] +id: PATO:0040017 +name: dysplastic growth +def: "A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal." [https://www.cancer.gov/publications/dictionaries/cancer-terms/def/dysplasia] +synonym: "dysgenesis" NARROW [] +is_a: PATO:0001433 ! growth quality of occurrent +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T19:01:51Z xsd:dateTime + +[Term] +id: PATO:0040019 +name: fibrotic +def: "Fibrosis is the formation of excess fibrous connective tissue in an organ or tissue in a reparative or reactive process." [https://en.wikipedia.org/wiki/Fibrosis] +is_a: PATO:0000025 ! composition +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T23:16:17Z xsd:dateTime + +[Term] +id: PATO:0040020 +name: spayed female +def: "Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal." [] +is_a: PATO:0000383 ! female +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-16T22:52:49Z xsd:dateTime + +[Term] +id: PATO:0040025 +name: lesioned +def: "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present." [NCIT:C3824] +is_a: PATO:0000141 ! structure +created_by: http://orcid.org/0000-0001-5208-3432 + +[Term] +id: PATO:0045000 +name: normal rate +def: "A rate which is relatively normal." [] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000161 ! rate +is_a: PATO:0045073 ! normal process quality +intersection_of: PATO:0000161 ! rate +intersection_of: has_relative_magnitude PATO:0000461 ! normal + +[Term] +id: PATO:0045001 +name: normal object quality +def: "A quality of an object that has a value that is normal or average." [] +is_a: PATO:0001241 ! physical object quality +intersection_of: PATO:0001241 ! physical object quality +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-21T14:11:01Z + +[Term] +id: PATO:0045002 +name: normal acidity +def: "An acidity which is relatively normal." [] +subset: value_slim +is_a: PATO:0001842 ! acidity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001842 ! acidity +intersection_of: has_relative_magnitude PATO:0000461 ! normal + +[Term] +id: PATO:0045003 +name: normal adhesivity +def: "A adhesivity which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0002331 ! adhesive +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002331 ! adhesive +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045004 +name: normal affinity +def: "An affinity which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0002070 ! affinity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002070 ! affinity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045005 +name: normal age +def: "An age which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0000011 ! age +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000011 ! age +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045006 +name: normal avidity +def: "An avidity which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002073 ! avidity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045007 +name: normal behavioural activity +def: "A behavioural quality of a process inhering in a bearer by virtue of the bearer's exhibiting normal or average activity." [] +subset: value_slim +is_a: PATO:0001707 ! behavioural active +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001707 ! behavioural active +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045008 +name: normal cellular motility +def: "A cellular motility which is normal or average." [] +subset: value_slim +is_a: PATO:0001488 ! cellular motility +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001488 ! cellular motility +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045009 +name: normal coiling +def: "A coiling which is normal or average." [] +subset: cell_quality +subset: value_slim +is_a: PATO:0000404 ! coiled +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000404 ! coiled +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045010 +name: normal concentration +def: "A concentration which is relatively normal or average." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0001159 ! concentrated +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001159 ! concentrated +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045011 +name: normal contractility +def: "A contractility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001690 ! contractile +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001690 ! contractile +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045012 +name: normal coordination +def: "A coordination which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000769 ! coordinated +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000769 ! coordinated +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045013 +name: normal curvature +def: "A curvature which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0000406 ! curved +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000406 ! curved +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045014 +name: normal distance +def: "A distance which is relatively normal or average." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0000040 ! distance +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000040 ! distance +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045015 +name: normal efficiency +def: "An efficiency which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0001678 ! efficient +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001678 ! efficient +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045016 +name: normal elasticity +def: "An elasticity which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0001171 ! elastic +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001171 ! elastic +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045017 +name: normal fecundity +def: "A fecundity which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000273 ! fecundity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000273 ! fecundity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045018 +name: normal female fertility +def: "A female fertility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000888 ! female fertile +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000888 ! female fertile +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045019 +name: normal female receptivity +def: "A female receptivity which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001720 ! female receptivity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001720 ! female receptivity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045020 +name: normal fertility +def: "A fertility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000955 ! fertile +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000955 ! fertile +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045021 +name: normal flexibility +def: "A flexibility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001544 ! flexible +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001544 ! flexible +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045022 +name: normal fluid flow +def: "A fluid flow which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0002243 ! fluid flow rate +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002243 ! fluid flow rate +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045023 +name: normal fluorescence +def: "A fluorescence which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0001290 ! fluorescent +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001290 ! fluorescent +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045024 +name: normal force +def: "A force which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0001035 ! force +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001035 ! force +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045025 +name: normal fragility +def: "A fragility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001362 ! fragile +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001362 ! fragile +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045026 +name: normal life span +def: "A life span which is relatively normal or average." [] +is_a: PATO:0000050 ! life span +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000050 ! life span +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045027 +name: normal magnetism +def: "A magnetism which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001685 ! magnetic +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001685 ! magnetic +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045028 +name: normal male fertility +def: "A male fertility which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000891 ! male fertile +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000891 ! male fertile +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045029 +name: normal male receptivity +def: "A male receptivity which is relatively normal or average." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0001721 ! male receptivity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001721 ! male receptivity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045030 +name: normal mass +def: "A mass which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0000125 ! mass +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000125 ! mass +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045031 +name: normal mass density +def: "A density which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0001164 ! dense +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001164 ! dense +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045032 +name: normal mobility +def: "A mobility which is relatively normal or average." [] +subset: value_slim +is_a: PATO:0000299 ! mobile +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000299 ! mobile +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045033 +name: normal odor +def: "An odor quality of having relatively normal or average odor." [] +subset: value_slim +is_a: PATO:0001331 ! odorous +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001331 ! odorous +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045034 +name: normal osmolality +def: "An osmolality which is relatively normal or average odor." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0002027 ! osmolality +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002027 ! osmolality +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045035 +name: normal osmolarity +def: "An osmolarity which is relatively normal or average odor." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0001655 ! osmolarity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001655 ! osmolarity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045036 +name: normal permeability +def: "A permeability which is relatively normal or average." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0000982 ! permeable +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000982 ! permeable +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045037 +name: normal phosphorylation +def: "A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a normal or average extent." [] +subset: value_slim +is_a: PATO:0002220 ! phosphorylated +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002220 ! phosphorylated +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045038 +name: normal photosensitivity +def: "A photosensitivity which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000547 ! photosensitive +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000547 ! photosensitive +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045039 +name: normal pigmentation +def: "A degree of pigmentation quality which is relatively normal or average" [] +subset: mpath_slim +subset: value_slim +is_a: PATO:0002248 ! pigmented +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002248 ! pigmented +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045040 +name: normal position +def: "A position which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000140 ! position +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000140 ! position +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045041 +name: normal angle to +def: "An angle which is relatively normal or average" [] +subset: relational_slim +subset: value_slim +is_a: PATO:0002326 ! angle +is_a: PATO:0045040 ! normal position +intersection_of: PATO:0002326 ! angle +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045042 +name: normal distribution +def: "A distribution which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001566 ! distributed +is_a: PATO:0045040 ! normal position +intersection_of: PATO:0001566 ! distributed +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045043 +name: normal elevation +def: "An elevation which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001687 ! elevation +is_a: PATO:0045040 ! normal position +intersection_of: PATO:0001687 ! elevation +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045044 +name: normal pressure +def: "A pressure which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001025 ! pressure +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001025 ! pressure +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045045 +name: normal radioactivity +def: "A radioactivity which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001741 ! radioactive +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001741 ! radioactive +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045046 +name: normal radiopacity +def: "A radiopacity which is relatively normal or average" [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0002136 ! radiopacity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002136 ! radiopacity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045047 +name: normal resistance to +def: "A resistance to a stimulus which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001178 ! resistant to +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001178 ! resistant to +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045048 +name: normal sensitivity to irradiation +def: "A sensitivity to irradiation which is relatively normal or average" [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001806 ! sensitivity to irradiation +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001806 ! sensitivity to irradiation +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045049 +name: normal sensitivity toward +def: "A sensitivity toward an external stimulus which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000516 ! sensitive toward +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000516 ! sensitive toward +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045050 +name: normal size +def: "A size quality which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000117 ! size +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000117 ! size +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045051 +name: normal area +def: "An area which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001323 ! area +is_a: PATO:0045050 ! normal size +intersection_of: PATO:0001323 ! area +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045052 +name: normal depth +def: "A depth quality which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001595 ! depth +is_a: PATO:0045050 ! normal size +intersection_of: PATO:0001595 ! depth +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045053 +name: normal height +def: "A height which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000119 ! height +is_a: PATO:0045050 ! normal size +intersection_of: PATO:0000119 ! height +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045054 +name: normal length +def: "A length quality which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000122 ! length +is_a: PATO:0045050 ! normal size +intersection_of: PATO:0000122 ! length +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045055 +name: normal diameter +def: "A diameter which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001334 ! diameter +is_a: PATO:0045054 ! normal length +intersection_of: PATO:0001334 ! diameter +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045056 +name: normal anterior-posterior diameter +def: "An anterior-posterior diameter which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0002041 ! anterior-posterior diameter +is_a: PATO:0045055 ! normal diameter +intersection_of: PATO:0002041 ! anterior-posterior diameter +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045057 +name: normal perimeter +def: "A perimeter which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001711 ! perimeter +is_a: PATO:0045054 ! normal length +intersection_of: PATO:0001711 ! perimeter +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045058 +name: normal circumference +def: "A circumference which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001648 ! circumference +is_a: PATO:0045057 ! normal perimeter +intersection_of: PATO:0001648 ! circumference +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045059 +name: normal thickness +def: "A thickness which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000915 ! thickness +is_a: PATO:0045050 ! normal size +intersection_of: PATO:0000915 ! thickness +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045060 +name: normal volume +def: "A volume which is relatively normal or average" [] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000918 ! volume +is_a: PATO:0045050 ! normal size +intersection_of: PATO:0000918 ! volume +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045061 +name: normal width +def: "A width which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000921 ! width +is_a: PATO:0045050 ! normal size +intersection_of: PATO:0000921 ! width +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045062 +name: normal solubility +def: "A solubility which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001537 ! soluble in +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001537 ! soluble in +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045063 +name: normal speed +def: "A speed which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000008 ! speed +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000008 ! speed +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045064 +name: normal strength +def: "A strength which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001230 ! strength +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001230 ! strength +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045065 +name: normal fatigability +def: "A fatigability which is relatively normal or average" [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001815 ! fatigability +is_a: PATO:0045064 ! normal strength +intersection_of: PATO:0001815 ! fatigability +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045066 +name: normal susceptibility toward +def: "A susceptibility toward an external stimulus which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0001152 ! susceptible toward +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001152 ! susceptible toward +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045067 +name: normal temperature +def: "A temperature which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000146 ! temperature +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000146 ! temperature +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045068 +name: normal tendency +def: "A tendency which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0002360 ! tendency +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002360 ! tendency +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045069 +name: normal threshold +def: "A threshold which is relatively normal or average" [] +subset: disposition_slim +subset: relational_slim +subset: value_slim +is_a: PATO:0000152 ! threshold +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000152 ! threshold +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045070 +name: normal tolerance to +def: "A tolerance to an external stimulus which is relatively normal or average" [] +subset: relational_slim +subset: value_slim +is_a: PATO:0000515 ! tolerant to +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000515 ! tolerant to +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045071 +name: normal tonicity +def: "A tonicity which is relatively normal or average" [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001439 ! tonicity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001439 ! tonicity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045072 +name: normal turgor +def: "A turgor which is relatively normal or average" [] +subset: cell_quality +subset: value_slim +is_a: PATO:0001620 ! turgor +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001620 ! turgor +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045073 +name: normal process quality +def: "A quality of aprocess that has a value that is normal or average." [] +is_a: PATO:0001236 ! process quality +intersection_of: PATO:0001236 ! process quality +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-21T14:11:01Z + +[Term] +id: PATO:0045074 +name: normal variability +def: "A variability which is relatively normal or average" [] +subset: value_slim +intersection_of: PATO:0001227 ! variant +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045075 +name: normal variability of color +def: "A variability which is relatively normal or average" [] +subset: value_slim +intersection_of: PATO:0001615 ! variant color +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045076 +name: normal variability of rate +def: "A variability of rate which is relatively normal or average" [] +subset: value_slim +intersection_of: PATO:0001586 ! variability of rate +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045077 +name: normal variability of size +def: "A variability of size which is relatively normal or average" [] +subset: value_slim +intersection_of: PATO:0001956 ! variability of size +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045078 +name: normal variability of temperature +def: "A variability of temperature which is relatively normal or average" [] +subset: value_slim +intersection_of: PATO:0001314 ! variant temperature +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045079 +name: normal velocity +def: "A velocity which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0002242 ! velocity +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002242 ! velocity +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045080 +name: normal virulence +def: "A virulence which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0002146 ! virulence +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002146 ! virulence +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045081 +name: normal viscosity +def: "A viscosity which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0000998 ! viscous +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000998 ! viscous +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045082 +name: normal waxiness +def: "A waxiness which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0002381 ! waxiness +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002381 ! waxiness +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045083 +name: normal wetness +def: "A wetness which is relatively normal or average" [] +subset: value_slim +is_a: PATO:0001823 ! wet +is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001823 ! wet +intersection_of: has_relative_magnitude PATO:0000461 ! normal +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045084 +name: normal duration +def: "A duration quality of a process which is relatively normal." [] +subset: value_slim +is_a: PATO:0001309 ! duration +is_a: PATO:0045073 ! normal process quality +intersection_of: PATO:0001309 ! duration +intersection_of: has_relative_magnitude PATO:0000461 ! normal + +[Term] +id: PATO:0045085 +name: normal duration of temperature +def: "A duration quality of temperature quality of a process which is relatively normal." [] +subset: value_slim +is_a: PATO:0001310 ! duration of temperature +is_a: PATO:0045084 ! normal duration +intersection_of: PATO:0001310 ! duration of temperature +intersection_of: has_relative_magnitude PATO:0000461 ! normal + +[Term] +id: PATO:0045086 +name: normal occurrence +def: "An occurrence which is relatively normal." [] +subset: value_slim +is_a: PATO:0000057 ! occurrence +is_a: PATO:0045073 ! normal process quality +intersection_of: PATO:0000057 ! occurrence +intersection_of: has_relative_magnitude PATO:0000461 ! normal + +[Term] +id: PATO:0045087 +name: normal frequency +def: "A frequency which is relatively normal." [] +subset: mpath_slim +subset: value_slim +is_a: PATO:0000044 ! frequency +is_a: PATO:0045000 ! normal rate +intersection_of: PATO:0000044 ! frequency +intersection_of: has_relative_magnitude PATO:0000461 ! normal + +[Term] +id: PATO:0045088 +name: normal sensitivity of a process +def: "A sensitivity of a process which is relatively normal." [] +subset: relational_slim +subset: value_slim +is_a: PATO:0001457 ! sensitivity of a process +is_a: PATO:0045073 ! normal process quality +intersection_of: PATO:0001457 ! sensitivity of a process +intersection_of: has_relative_magnitude PATO:0000461 ! normal + +[Term] +id: PATO:0045089 +name: normal sensitivity of a process to oxygen +def: "A sensitivity of occurrent to oxygen which is relatively normal." [] +subset: disposition_slim +subset: value_slim +is_a: PATO:0001459 ! aerobic (for occurrence) +is_a: PATO:0045088 ! normal sensitivity of a process +intersection_of: PATO:0001459 ! aerobic (for occurrence) +intersection_of: has_relative_magnitude PATO:0000461 ! normal + +[Term] +id: PATO:0045090 +name: cardinal direction +def: "The four cardinal directions or cardinal points are the directions north, east, south, and west, commonly denoted by their initials, N, E, S, W. East and west are at right angles to north and south, with east being in the clockwise direction of rotation from north and west being directly opposite east." [Wikipedia:http\://en.wikipedia.org/wiki/Cardinal_direction] +subset: value_slim +is_a: PATO:0000039 ! direction +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045091 +name: north +def: "North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west." [Wikipedia:http\://en.wikipedia.org/wiki/North] +subset: value_slim +is_a: PATO:0045090 ! cardinal direction +relationship: is_opposite_of PATO:0045093 ! south +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045092 +name: east +def: "East is one of the four cardinal directions or points of the compass. It is the opposite direction from west." [Wikipedia:http\://en.wikipedia.org/wiki/East] +subset: value_slim +is_a: PATO:0045090 ! cardinal direction +relationship: is_opposite_of PATO:0045094 ! west +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045093 +name: south +def: "South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west." [Wikipedia:http\://en.wikipedia.org/wiki/South] +subset: value_slim +is_a: PATO:0045090 ! cardinal direction +relationship: is_opposite_of PATO:0045091 ! north +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0045094 +name: west +def: "West is one of the four cardinal directions or points of the compass. It is the opposite direction from east." [Wikipedia:http\://en.wikipedia.org/wiki/West] +subset: value_slim +is_a: PATO:0045090 ! cardinal direction +relationship: is_opposite_of PATO:0045092 ! east +created_by: Luke Slater +creation_date: 2017-12-22T14:16:43Z + +[Term] +id: PATO:0050000 +name: rate of occurence +def: "The number of repeated events per unit time, occurring in a repeating series. (e.g. the number of heart beats occurring over 1 minute)" [https://orcid.org/0000-0002-9943-9018] +is_a: PATO:0000161 ! rate + +[Term] +id: PATO:0050001 +name: rate of continuous process +def: "The rate of output of a continuous process. Example include: growth rate, cell migration rate, enzyme reaction rate." [https://orcid.org/0000-0002-9943-9018] +is_a: PATO:0000161 ! rate + +[Term] +id: PATO:0055001 +name: decreased spatial extent of a process +def: "A spatial distribution of a process in which the process occupies a smaller length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type." [orcid:0000-0003-4148-4606] +intersection_of: PATO:0010005 ! spatial distribution of a process +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +created_by: midori +creation_date: 2019-07-29T14:22:24Z + +[Term] +id: PATO:0055002 +name: increased spatial extent of a process +def: "A spatial distribution of a process in which the process occupies a greater length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type." [https://orcid.org/0000-0003-4148-4606] +intersection_of: PATO:0010005 ! spatial distribution of a process +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +created_by: midori +creation_date: 2019-07-29T14:23:31Z + +[Term] +id: PATO:0060001 +name: sex-specific +def: "A quality inhering in a bearer by virtue of the bearer's being present in one sex and absent from the other in members of the same species." [http://orcid.org/0000-0002-1373-1705] +is_a: PATO:0002451 ! sexually dimorphic +created_by: http://orcid.org/0000-0002-1373-1705 +creation_date: 2019-08-23T08:46:30Z + +[Term] +id: PATO:0060002 +name: male-specific +def: "A quality inhering in a bearer by virtue of the bearer's being present in males and absent from females in members of the same species." [http://orcid.org/0000-0002-1373-1705] +is_a: PATO:0060001 ! sex-specific +created_by: http://orcid.org/0000-0002-1373-1705 +creation_date: 2019-08-23T08:49:59Z + +[Term] +id: PATO:0060003 +name: female-specific +def: "A quality inhering in a bearer by virtue of the bearer's being present in females and absent from males in members of the same species." [http://orcid.org/0000-0002-1373-1705] +is_a: PATO:0060001 ! sex-specific +created_by: http://orcid.org/0000-0002-1373-1705 +creation_date: 2019-08-23T08:51:22Z + +[Typedef] +id: correlates_with +name: correlates_with + +[Typedef] +id: decreased_in_magnitude_relative_to +name: decreased_in_magnitude_relative_to +def: "q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." [PATOC:CJM] +comment: This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'. +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality +is_transitive: true +is_a: different_in_magnitude_relative_to ! different_in_magnitude_relative_to + +[Typedef] +id: different_in_magnitude_relative_to +name: different_in_magnitude_relative_to +def: "q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." [PATOC:CJM] +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality + +[Typedef] +id: directly_associated_with +name: directly_associated_with +def: "q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear." [PATOC:cjm, Wikipedia:Association_(statistics)] +comment: Example: 'Lewy bodies increased number related to dystrophic neurite increased number' (from annotation of PMID:8740227 in http://ccdb.ucsd.edu/1.0/NDPO.owl#ndpo_404). Here the increase in the number of lewy bodies is directly_associated_with the increase in the number of dystrophic neurites.\nAssociation is weaker than correlation or proportionality. These relations may be later added to PATO. +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality +created_by: cjm +creation_date: 2009-08-26T02:50:08Z + +[Typedef] +id: has_cross_section +name: has_cross_section +def: "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2." [PATOC:CJM] +comment: Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round. + +[Typedef] +id: has_dividend_entity +name: has_dividend_entity +domain: PATO:0001470 ! proportionality to + +[Typedef] +id: has_dividend_quality +name: has_dividend_quality +domain: PATO:0001470 ! proportionality to +range: PATO:0000001 ! quality +is_a: has_ratio_quality ! has_ratio_quality + +[Typedef] +id: has_divisor_entity +name: has_divisor_entity +domain: PATO:0001470 ! proportionality to + +[Typedef] +id: has_divisor_quality +name: has_divisor_quality +domain: PATO:0001470 ! proportionality to +range: PATO:0000001 ! quality +is_a: has_ratio_quality ! has_ratio_quality + +[Typedef] +id: has_part +name: has_part +def: "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2." [PATOC:CJM] +comment: We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. +xref: BFO:0000051 + +[Typedef] +id: has_ratio_quality +name: has_ratio_quality +domain: PATO:0001470 ! proportionality to +range: PATO:0000001 ! quality + +[Typedef] +id: has_relative_magnitude +name: has_relative_magnitude + +[Typedef] +id: increased_in_magnitude_relative_to +name: increased_in_magnitude_relative_to +def: "q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." [PATOC:CJM] +comment: This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'. +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality +is_transitive: true +is_a: different_in_magnitude_relative_to ! different_in_magnitude_relative_to + +[Typedef] +id: inversely_associated_with +name: inversely_associated_with +def: "q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear." [PATOC:cjm, Wikipedia:Association_(statistics)] +comment: Association is weaker than correlation or proportionality. These relations may be later added to PATO. +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality +created_by: cjm +creation_date: 2009-08-26T02:50:24Z + +[Typedef] +id: is_magnitude_of +name: is_magnitude_of +namespace: pato.ontology + +[Typedef] +id: is_measurement_of +name: is_measurement_of +namespace: pato.ontology + +[Typedef] +id: is_opposite_of +name: is opposite of +xref: RO:0002604 +is_metadata_tag: true +is_class_level: true + +[Typedef] +id: is_unit_of +name: is_unit_of +namespace: pato.ontology + +[Typedef] +id: part_of +name: part_of +xref: BFO:0000050 +is_transitive: true + +[Typedef] +id: realized_by +name: realized_by + +[Typedef] +id: reciprocal_of +name: reciprocal_of +def: "q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e." [PATOC:CJM] +comment: There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality. + +[Typedef] +id: similar_in_magnitude_relative_to +name: similar_in_magnitude_relative_to +def: "q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." [PATOC:CJM] +domain: PATO:0000001 ! quality +range: PATO:0000001 ! quality + +[Typedef] +id: singly_occurring_form_of +name: singly_occurring_form_of +comment: PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them. +synonym: "monadic_form_of" EXACT [] + +[Typedef] +id: towards +name: towards +comment: Relation binding a relational quality or disposition to the relevant type of entity. + diff --git a/src/ontology/ontologyterms.txt b/src/ontology/ontologyterms.txt index e69de29b..32f50302 100644 --- a/src/ontology/ontologyterms.txt +++ b/src/ontology/ontologyterms.txt @@ -0,0 +1,2746 @@ +term +http://purl.obolibrary.org/obo/PATO_0001030 +http://purl.obolibrary.org/obo/PATO_0001906 +http://purl.obolibrary.org/obo/PATO_0001034 +http://purl.obolibrary.org/obo/PATO_0001018 +http://purl.obolibrary.org/obo/PATO_0001807 +http://purl.obolibrary.org/obo/PATO_0002305 +http://purl.obolibrary.org/obo/PATO_0001806 +http://purl.obolibrary.org/obo/PATO_0001808 +http://purl.obolibrary.org/obo/PATO_0002303 +http://purl.obolibrary.org/obo/PATO_0001241 +http://purl.obolibrary.org/obo/PATO_0002300 +http://purl.obolibrary.org/obo/PATO_0000085 +http://purl.obolibrary.org/obo/PATO_0002468 +http://purl.obolibrary.org/obo/PATO_0015008 +http://purl.obolibrary.org/obo/PATO_0000117 +http://purl.obolibrary.org/obo/PATO_0001619 +http://purl.obolibrary.org/obo/PATO_0001439 +http://purl.obolibrary.org/obo/PATO_0001579 +http://purl.obolibrary.org/obo/PATO_0001618 +http://purl.obolibrary.org/obo/PATO_0002521 +http://purl.obolibrary.org/obo/PATO_0000052 +http://purl.obolibrary.org/obo/PATO_0001842 +http://purl.obolibrary.org/obo/PATO_0000033 +http://purl.obolibrary.org/obo/PATO_0000337 +http://purl.obolibrary.org/obo/PATO_0000019 +http://purl.obolibrary.org/obo/PATO_0001766 +http://purl.obolibrary.org/obo/PATO_0000001 +http://purl.obolibrary.org/obo/PATO_0002001 +http://purl.obolibrary.org/obo/PATO_0002083 +http://purl.obolibrary.org/obo/PATO_0001555 +http://purl.obolibrary.org/obo/PATO_0002002 +http://purl.obolibrary.org/obo/PATO_0001999 +http://purl.obolibrary.org/obo/PATO_0000128 +http://purl.obolibrary.org/obo/PATO_0001035 +http://purl.obolibrary.org/obo/PATO_0001645 +http://purl.obolibrary.org/obo/PATO_0001598 +http://purl.obolibrary.org/obo/PATO_0000461 +http://purl.obolibrary.org/obo/PATO_0002102 +http://purl.obolibrary.org/obo/PATO_0001396 +http://purl.obolibrary.org/obo/PATO_0001294 +http://purl.obolibrary.org/obo/PATO_0001292 +http://purl.obolibrary.org/obo/PATO_0001856 +http://purl.obolibrary.org/obo/PATO_0000614 +http://purl.obolibrary.org/obo/PATO_0001485 +http://purl.obolibrary.org/obo/PATO_0002452 +http://purl.obolibrary.org/obo/PATO_0000141 +http://purl.obolibrary.org/obo/PATO_0001827 +http://purl.obolibrary.org/obo/PATO_0001894 +http://purl.obolibrary.org/obo/PATO_0001651 +http://purl.obolibrary.org/obo/PATO_0001178 +http://purl.obolibrary.org/obo/PATO_0001046 +http://purl.obolibrary.org/obo/PATO_0001650 +http://purl.obolibrary.org/obo/PATO_0001459 +http://purl.obolibrary.org/obo/PATO_0001458 +http://purl.obolibrary.org/obo/PATO_0001460 +http://purl.obolibrary.org/obo/PATO_0001457 +http://purl.obolibrary.org/obo/PATO_0001154 +http://purl.obolibrary.org/obo/PATO_0002364 +http://purl.obolibrary.org/obo/PATO_0000051 +http://purl.obolibrary.org/obo/PATO_0000319 +http://purl.obolibrary.org/obo/PATO_0000014 +http://purl.obolibrary.org/obo/PATO_0001362 +http://purl.obolibrary.org/obo/PATO_0001716 +http://purl.obolibrary.org/obo/PATO_0001662 +http://purl.obolibrary.org/obo/PATO_0001654 +http://purl.obolibrary.org/obo/PATO_0001653 +http://purl.obolibrary.org/obo/PATO_0001652 +http://purl.obolibrary.org/obo/PATO_0000395 +http://purl.obolibrary.org/obo/PATO_0000049 +http://purl.obolibrary.org/obo/PATO_0001005 +http://purl.obolibrary.org/obo/PATO_0000502 +http://purl.obolibrary.org/obo/PATO_0000918 +http://purl.obolibrary.org/obo/PATO_0001710 +http://purl.obolibrary.org/obo/PATO_0000460 +http://purl.obolibrary.org/obo/PATO_0000068 +http://purl.obolibrary.org/obo/PATO_0000008 +http://purl.obolibrary.org/obo/PATO_0002297 +http://purl.obolibrary.org/obo/PATO_0002298 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+http://purl.obolibrary.org/obo/PATO_0000079 +http://purl.obolibrary.org/obo/PATO_0001223 +http://purl.obolibrary.org/obo/PATO_0001033 +http://purl.obolibrary.org/obo/PATO_0000871 +http://purl.obolibrary.org/obo/PATO_0000681 +http://purl.obolibrary.org/obo/PATO_0000491 +http://purl.obolibrary.org/obo/PATO_0000834 +http://purl.obolibrary.org/obo/PATO_0000264 +http://purl.obolibrary.org/obo/PATO_0000074 +http://purl.obolibrary.org/obo/PATO_0000607 +http://purl.obolibrary.org/obo/PATO_0000417 +http://purl.obolibrary.org/obo/PATO_0000227 +http://purl.obolibrary.org/obo/PATO_0000779 +http://purl.obolibrary.org/obo/PATO_0000589 +http://purl.obolibrary.org/obo/PATO_0000399 +http://purl.obolibrary.org/obo/PATO_0000602 +http://purl.obolibrary.org/obo/PATO_0000412 +http://purl.obolibrary.org/obo/PATO_0000222 +http://purl.obolibrary.org/obo/PATO_0001126 +http://purl.obolibrary.org/obo/PATO_0000032 +http://purl.obolibrary.org/obo/PATO_0045018 +http://purl.obolibrary.org/obo/PATO_0000774 +http://purl.obolibrary.org/obo/PATO_0000737 +http://purl.obolibrary.org/obo/PATO_0000357 +http://purl.obolibrary.org/obo/PATO_0001121 +http://purl.obolibrary.org/obo/PATO_0045013 +http://purl.obolibrary.org/obo/PATO_0000922 +http://purl.obolibrary.org/obo/PATO_0000732 +http://purl.obolibrary.org/obo/PATO_0000542 +http://purl.obolibrary.org/obo/PATO_0000352 +http://purl.obolibrary.org/obo/PATO_0000162 +http://purl.obolibrary.org/obo/PATO_0001066 +http://purl.obolibrary.org/obo/PATO_0000315 +http://purl.obolibrary.org/obo/PATO_0001219 +http://purl.obolibrary.org/obo/PATO_0000867 +http://purl.obolibrary.org/obo/PATO_0000677 +http://purl.obolibrary.org/obo/PATO_0001631 +http://purl.obolibrary.org/obo/PATO_0001061 +http://purl.obolibrary.org/obo/PATO_0000310 +http://purl.obolibrary.org/obo/PATO_0001214 +http://purl.obolibrary.org/obo/PATO_0000120 +http://purl.obolibrary.org/obo/PATO_0000862 +http://purl.obolibrary.org/obo/PATO_0000672 +http://purl.obolibrary.org/obo/PATO_0000482 +http://purl.obolibrary.org/obo/PATO_0002530 +http://purl.obolibrary.org/obo/PATO_0000292 +http://purl.obolibrary.org/obo/PATO_0000825 +http://purl.obolibrary.org/obo/PATO_0000445 +http://purl.obolibrary.org/obo/PATO_0000255 +http://purl.obolibrary.org/obo/PATO_0000065 +http://purl.obolibrary.org/obo/PATO_0000997 +http://purl.obolibrary.org/obo/PATO_0000408 +http://purl.obolibrary.org/obo/PATO_0045083 +http://purl.obolibrary.org/obo/PATO_0000218 +http://purl.obolibrary.org/obo/PATO_0000028 +http://purl.obolibrary.org/obo/PATO_0000820 +http://purl.obolibrary.org/obo/PATO_0002628 +http://purl.obolibrary.org/obo/PATO_0000250 +http://purl.obolibrary.org/obo/PATO_0045046 +http://purl.obolibrary.org/obo/PATO_0000213 +http://purl.obolibrary.org/obo/PATO_0001117 +http://purl.obolibrary.org/obo/PATO_0000023 +http://purl.obolibrary.org/obo/PATO_0045009 +http://purl.obolibrary.org/obo/PATO_0000765 +http://purl.obolibrary.org/obo/PATO_0000575 +http://purl.obolibrary.org/obo/PATO_0001479 +http://purl.obolibrary.org/obo/PATO_0000385 +http://purl.obolibrary.org/obo/PATO_0000195 +http://purl.obolibrary.org/obo/PATO_0001099 +http://purl.obolibrary.org/obo/PATO_0045041 +http://purl.obolibrary.org/obo/PATO_0000728 +http://purl.obolibrary.org/obo/PATO_0000538 +http://purl.obolibrary.org/obo/PATO_0000348 +http://purl.obolibrary.org/obo/PATO_0000158 +http://purl.obolibrary.org/obo/PATO_0001112 +http://purl.obolibrary.org/obo/PATO_0045004 +http://purl.obolibrary.org/obo/PATO_0000190 +http://purl.obolibrary.org/obo/PATO_0001094 +http://purl.obolibrary.org/obo/PATO_0000913 +http://purl.obolibrary.org/obo/PATO_0000723 +http://purl.obolibrary.org/obo/PATO_0000533 +http://purl.obolibrary.org/obo/PATO_0000343 +http://purl.obolibrary.org/obo/PATO_0000153 +http://purl.obolibrary.org/obo/PATO_0001057 +http://purl.obolibrary.org/obo/PATO_0000895 +http://purl.obolibrary.org/obo/PATO_0000306 +http://purl.obolibrary.org/obo/PATO_0000116 +http://purl.obolibrary.org/obo/PATO_0000858 +http://purl.obolibrary.org/obo/PATO_0000668 +http://purl.obolibrary.org/obo/PATO_0000478 +http://purl.obolibrary.org/obo/PATO_0000288 +http://purl.obolibrary.org/obo/PATO_0000098 +http://purl.obolibrary.org/obo/PATO_0000301 +http://purl.obolibrary.org/obo/PATO_0000111 +http://purl.obolibrary.org/obo/PATO_0001015 +http://purl.obolibrary.org/obo/PATO_0000853 +http://purl.obolibrary.org/obo/PATO_0000663 +http://purl.obolibrary.org/obo/PATO_0000473 +http://purl.obolibrary.org/obo/PATO_0000283 +http://purl.obolibrary.org/obo/PATO_0000093 +http://purl.obolibrary.org/obo/PATO_0045079 +http://purl.obolibrary.org/obo/PATO_0000816 +http://purl.obolibrary.org/obo/PATO_0000436 +http://purl.obolibrary.org/obo/PATO_0000246 +http://purl.obolibrary.org/obo/PATO_0001010 +http://purl.obolibrary.org/obo/PATO_0000988 +http://purl.obolibrary.org/obo/PATO_0000798 +http://purl.obolibrary.org/obo/PATO_0001182 +http://purl.obolibrary.org/obo/PATO_0002086 +http://purl.obolibrary.org/obo/PATO_0045074 +http://purl.obolibrary.org/obo/PATO_0000209 +http://purl.obolibrary.org/obo/PATO_0000811 +http://purl.obolibrary.org/obo/PATO_0000621 +http://purl.obolibrary.org/obo/PATO_0000431 +http://purl.obolibrary.org/obo/PATO_0000241 +http://purl.obolibrary.org/obo/PATO_0001145 +http://purl.obolibrary.org/obo/PATO_0045037 +http://purl.obolibrary.org/obo/PATO_0000793 +http://purl.obolibrary.org/obo/PATO_0002461 +http://purl.obolibrary.org/obo/PATO_0000204 +http://purl.obolibrary.org/obo/PATO_0001108 +http://purl.obolibrary.org/obo/PATO_0000756 +http://purl.obolibrary.org/obo/PATO_0000566 +http://purl.obolibrary.org/obo/PATO_0000376 +http://purl.obolibrary.org/obo/PATO_0001140 +http://purl.obolibrary.org/obo/PATO_0045032 +http://purl.obolibrary.org/obo/PATO_0001692 +http://purl.obolibrary.org/obo/PATO_0000909 +http://purl.obolibrary.org/obo/PATO_0000529 +http://purl.obolibrary.org/obo/PATO_0000339 +http://purl.obolibrary.org/obo/PATO_0000149 +http://purl.obolibrary.org/obo/PATO_0001103 +http://purl.obolibrary.org/obo/PATO_0000751 +http://purl.obolibrary.org/obo/PATO_0000561 +http://purl.obolibrary.org/obo/PATO_0000371 +http://purl.obolibrary.org/obo/PATO_0000181 +http://purl.obolibrary.org/obo/PATO_0001085 diff --git a/src/ontology/pato-edit.obo b/src/ontology/pato-edit.obo index aee7fff4..efdf1edf 100644 --- a/src/ontology/pato-edit.obo +++ b/src/ontology/pato-edit.obo @@ -7600,6 +7600,7 @@ synonym: "quality of occurrent" EXACT [] synonym: "quality of process" EXACT [] synonym: "relational quality of occurrent" EXACT [] is_a: PATO:0000001 ! quality +disjoint_from: PATO:0001241 ! physical object quality [Term] id: PATO:0001241 @@ -8095,15 +8096,15 @@ name: variability def: "A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing." [Dictionary:http\://dictionary.reference.com/] subset: attribute_slim synonym: "variability of a physical quality" RELATED [] -is_a: PATO:0001236 ! process quality +is_a: PATO:0000001 ! quality [Term] id: PATO:0001304 name: variability of temperature def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change." [PATO:GVG] subset: attribute_slim -is_a: PATO:0001303 ! variability -relationship: towards PATO:0000146 ! temperature +intersection_of: PATO:0001303 ! variability +intersection_of: towards PATO:0000146 ! temperature [Term] id: PATO:0001305 @@ -8139,9 +8140,6 @@ name: decreased variability of temperature def: "A variability of temperature which is relatively low." [PATOC:GVG] subset: value_slim synonym: "low variability of temperature" EXACT [] -is_a: PATO:0001314 ! variant temperature -is_a: PATO:0002302 ! decreased process quality -is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0001314 ! variant temperature intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001308 ! increased variability of temperature @@ -8152,9 +8150,6 @@ name: increased variability of temperature def: "A variability of temperature which is relatively high." [PATOC:GVG] subset: value_slim synonym: "high variability of temperature" EXACT [] -is_a: PATO:0001314 ! variant temperature -is_a: PATO:0002304 ! increased process quality -is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0001314 ! variant temperature intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001307 ! decreased variability of temperature @@ -10450,9 +10445,6 @@ name: decreased variability def: "A variability which is relatively low." [PATO:GVG] subset: value_slim synonym: "low variability" EXACT [] -is_a: PATO:0001227 ! variant -is_a: PATO:0002302 ! decreased process quality -is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0001227 ! variant intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001584 ! increased variability @@ -10463,9 +10455,6 @@ name: increased variability def: "A variability which is relatively high." [PATO:GVG] subset: value_slim synonym: "high variability" EXACT [] -is_a: PATO:0001227 ! variant -is_a: PATO:0002304 ! increased process quality -is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0001227 ! variant intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001583 ! decreased variability @@ -10494,9 +10483,6 @@ name: increased variability of rate def: "A variability of rate which is relatively high." [PATO:GVG] subset: value_slim synonym: "high variability of rate" EXACT [] -is_a: PATO:0001586 ! variability of rate -is_a: PATO:0002304 ! increased process quality -is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0001586 ! variability of rate intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001588 ! decreased variability of rate @@ -10507,9 +10493,6 @@ name: decreased variability of rate def: "A variability of rate which is relatively low." [PATO:GVG] subset: value_slim synonym: "low variability of rate" EXACT [] -is_a: PATO:0001586 ! variability of rate -is_a: PATO:0002302 ! decreased process quality -is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0001586 ! variability of rate intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001587 ! increased variability of rate @@ -10716,9 +10699,6 @@ name: increased variability of color def: "A variability of color which is relatively high." [PATO:GVG] subset: value_slim synonym: "high variability of color" EXACT [] -is_a: PATO:0001615 ! variant color -is_a: PATO:0002304 ! increased process quality -is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0001615 ! variant color intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001613 ! decreased variability of color @@ -10729,9 +10709,6 @@ name: decreased variability of color def: "A variability of color which is relatively low." [PATO:GVG] subset: value_slim synonym: "low variability of color" EXACT [] -is_a: PATO:0001615 ! variant color -is_a: PATO:0002302 ! decreased process quality -is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0001615 ! variant color intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001612 ! increased variability of color @@ -13829,9 +13806,6 @@ name: decreased variability of size def: "A variability of size which is relatively low." [PATOC:GVG] subset: value_slim synonym: "low variability of size" EXACT [] -is_a: PATO:0001956 ! variability of size -is_a: PATO:0002302 ! decreased process quality -is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0001956 ! variability of size intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001958 ! increased variability of size @@ -13842,9 +13816,6 @@ name: increased variability of size def: "A variability of size which is relatively high." [PATOC:GVG] subset: value_slim synonym: "high variability of size" EXACT [] -is_a: PATO:0001956 ! variability of size -is_a: PATO:0002304 ! increased process quality -is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0001956 ! variability of size intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001957 ! decreased variability of size @@ -21332,9 +21303,6 @@ id: PATO:0045074 name: normal variability def: "A variability which is relatively normal or average" [] subset: value_slim -is_a: PATO:0001227 ! variant -is_a: PATO:0045001 ! normal object quality -is_a: PATO:0045073 ! normal process quality intersection_of: PATO:0001227 ! variant intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater @@ -21345,9 +21313,6 @@ id: PATO:0045075 name: normal variability of color def: "A variability which is relatively normal or average" [] subset: value_slim -is_a: PATO:0001615 ! variant color -is_a: PATO:0045001 ! normal object quality -is_a: PATO:0045073 ! normal process quality intersection_of: PATO:0001615 ! variant color intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater @@ -21358,9 +21323,6 @@ id: PATO:0045076 name: normal variability of rate def: "A variability of rate which is relatively normal or average" [] subset: value_slim -is_a: PATO:0001586 ! variability of rate -is_a: PATO:0045001 ! normal object quality -is_a: PATO:0045073 ! normal process quality intersection_of: PATO:0001586 ! variability of rate intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater @@ -21371,9 +21333,6 @@ id: PATO:0045077 name: normal variability of size def: "A variability of size which is relatively normal or average" [] subset: value_slim -is_a: PATO:0001956 ! variability of size -is_a: PATO:0045001 ! normal object quality -is_a: PATO:0045073 ! normal process quality intersection_of: PATO:0001956 ! variability of size intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater @@ -21384,9 +21343,6 @@ id: PATO:0045078 name: normal variability of temperature def: "A variability of temperature which is relatively normal or average" [] subset: value_slim -is_a: PATO:0001314 ! variant temperature -is_a: PATO:0045001 ! normal object quality -is_a: PATO:0045073 ! normal process quality intersection_of: PATO:0001314 ! variant temperature intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater diff --git a/src/ontology/reports/pato-edit.obo-obo-report.tsv b/src/ontology/reports/pato-edit.obo-obo-report.tsv new file mode 100644 index 00000000..cd838d11 --- /dev/null +++ b/src/ontology/reports/pato-edit.obo-obo-report.tsv @@ -0,0 +1,104 @@ +Level Rule Name Subject Property Value +ERROR duplicate_definition PATO:0045074 IAO:0000115 A variability which is relatively normal or average +ERROR duplicate_definition PATO:0045075 IAO:0000115 A variability which is relatively normal or average +ERROR duplicate_definition PATO:0001382 IAO:0000115 A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes. +ERROR duplicate_definition PATO:0001384 IAO:0000115 A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes. +ERROR missing_ontology_description pato.owl dc11:description +ERROR duplicate_label PATO:0001174 rdfs:label obsolete urine composition +ERROR duplicate_label PATO:0001175 rdfs:label obsolete urine composition +ERROR duplicate_label PATO:0000195 rdfs:label obsolete startle response +ERROR duplicate_label PATO:0000754 rdfs:label obsolete startle response +ERROR duplicate_label PATO:0001180 rdfs:label obsolete relative response +ERROR duplicate_label PATO:0001182 rdfs:label obsolete relative response +ERROR duplicate_label PATO:0000104 rdfs:label obsolete osmotic response sensitivity +ERROR duplicate_label PATO:0000533 rdfs:label obsolete osmotic response sensitivity +ERROR missing_ontology_license pato.owl dc:license +ERROR missing_ontology_title pato.owl dc11:title +WARN missing_definition BFO:0000050 IAO:0000115 +WARN missing_definition IAO:0000115 IAO:0000115 +WARN missing_definition IAO:0100001 IAO:0000115 +WARN missing_definition PATO:0000068 IAO:0000115 +WARN missing_definition PATO:0001492 IAO:0000115 +WARN missing_definition PATO:0001493 IAO:0000115 +WARN missing_definition PATO:0001494 IAO:0000115 +WARN missing_definition PATO:0001760 IAO:0000115 +WARN missing_definition PATO:0001761 IAO:0000115 +WARN missing_definition PATO:0001762 IAO:0000115 +WARN missing_definition PATO:0001763 IAO:0000115 +WARN missing_definition PATO:0001767 IAO:0000115 +WARN missing_definition PATO:0002016 IAO:0000115 +WARN missing_definition PATO:0002017 IAO:0000115 +WARN missing_definition PATO:0002018 IAO:0000115 +WARN missing_definition PATO:0002062 IAO:0000115 +WARN missing_definition PATO:0002142 IAO:0000115 +WARN missing_definition PATO:0002143 IAO:0000115 +WARN missing_definition PATO:0002267 IAO:0000115 +WARN missing_definition PATO:0002290 IAO:0000115 +WARN missing_definition PATO:0002321 IAO:0000115 +WARN missing_definition PATO:0002322 IAO:0000115 +WARN missing_definition RO:0002604 IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#correlates_with IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#has_dividend_entity IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#has_dividend_quality IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#has_divisor_entity IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#has_divisor_quality IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#has_ratio_quality IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#has_relative_magnitude IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#is_magnitude_of IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#is_measurement_of IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#is_unit_of IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#realized_by IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#singly_occurring_form_of IAO:0000115 +WARN missing_definition http://purl.obolibrary.org/obo/pato#towards IAO:0000115 +WARN missing_definition oboInOwl:SubsetProperty IAO:0000115 +WARN missing_definition oboInOwl:consider IAO:0000115 +WARN missing_definition oboInOwl:hasAlternativeId IAO:0000115 +WARN missing_definition oboInOwl:hasBroadSynonym IAO:0000115 +WARN missing_definition oboInOwl:hasDbXref IAO:0000115 +WARN missing_definition oboInOwl:hasExactSynonym IAO:0000115 +WARN missing_definition oboInOwl:hasNarrowSynonym IAO:0000115 +WARN missing_definition oboInOwl:hasOBOFormatVersion IAO:0000115 +WARN missing_definition oboInOwl:hasOBONamespace IAO:0000115 +WARN missing_definition oboInOwl:hasRelatedSynonym IAO:0000115 +WARN missing_definition oboInOwl:inSubset IAO:0000115 +WARN missing_definition oboInOwl:shorthand IAO:0000115 +INFO lowercase_definition PATO:0002401 IAO:0000115 characterised by an unidentifiable pattern. +INFO lowercase_definition PATO:0015026 IAO:0000115 quality, state, or degree of being stable. +INFO lowercase_definition http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to IAO:0000115 q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. +INFO lowercase_definition http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to IAO:0000115 q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. +INFO lowercase_definition http://purl.obolibrary.org/obo/pato#directly_associated_with IAO:0000115 q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear. +INFO lowercase_definition http://purl.obolibrary.org/obo/pato#has_cross_section IAO:0000115 s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2. +INFO lowercase_definition http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to IAO:0000115 q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. +INFO lowercase_definition http://purl.obolibrary.org/obo/pato#inversely_associated_with IAO:0000115 q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear. +INFO lowercase_definition http://purl.obolibrary.org/obo/pato#reciprocal_of IAO:0000115 q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e. +INFO lowercase_definition http://purl.obolibrary.org/obo/pato#similar_in_magnitude_relative_to IAO:0000115 q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. +INFO missing_superclass PATO:0000001 rdfs:subClassOf +INFO missing_superclass PATO:0001304 rdfs:subClassOf +INFO missing_superclass PATO:0001307 rdfs:subClassOf +INFO missing_superclass PATO:0001308 rdfs:subClassOf +INFO missing_superclass PATO:0001583 rdfs:subClassOf +INFO missing_superclass PATO:0001584 rdfs:subClassOf +INFO missing_superclass PATO:0001587 rdfs:subClassOf +INFO missing_superclass PATO:0001588 rdfs:subClassOf +INFO missing_superclass PATO:0001612 rdfs:subClassOf +INFO missing_superclass PATO:0001613 rdfs:subClassOf +INFO missing_superclass PATO:0001957 rdfs:subClassOf +INFO missing_superclass PATO:0001958 rdfs:subClassOf +INFO missing_superclass PATO:0010004 rdfs:subClassOf +INFO missing_superclass PATO:0015010 rdfs:subClassOf +INFO missing_superclass PATO:0015011 rdfs:subClassOf +INFO missing_superclass PATO:0015014 rdfs:subClassOf +INFO missing_superclass PATO:0015015 rdfs:subClassOf +INFO missing_superclass PATO:0015022 rdfs:subClassOf +INFO missing_superclass PATO:0015023 rdfs:subClassOf +INFO missing_superclass PATO:0015024 rdfs:subClassOf +INFO missing_superclass PATO:0015025 rdfs:subClassOf +INFO missing_superclass PATO:0015027 rdfs:subClassOf +INFO missing_superclass PATO:0015028 rdfs:subClassOf +INFO missing_superclass PATO:0045074 rdfs:subClassOf +INFO missing_superclass PATO:0045075 rdfs:subClassOf +INFO missing_superclass PATO:0045076 rdfs:subClassOf +INFO missing_superclass PATO:0045077 rdfs:subClassOf +INFO missing_superclass PATO:0045078 rdfs:subClassOf +INFO missing_superclass PATO:0055001 rdfs:subClassOf +INFO missing_superclass PATO:0055002 rdfs:subClassOf diff --git a/src/ontology/simple_seed.txt b/src/ontology/simple_seed.txt new file mode 100644 index 00000000..6c373bba --- /dev/null +++ b/src/ontology/simple_seed.txt @@ -0,0 +1,2782 @@ +cls +http://purl.obolibrary.org/obo/BFO_0000050 +http://purl.obolibrary.org/obo/BFO_0000051 +http://purl.obolibrary.org/obo/PATO_0000000 +http://purl.obolibrary.org/obo/PATO_0000001 +http://purl.obolibrary.org/obo/PATO_0000002 +http://purl.obolibrary.org/obo/PATO_0000003 +http://purl.obolibrary.org/obo/PATO_0000004 +http://purl.obolibrary.org/obo/PATO_0000005 +http://purl.obolibrary.org/obo/PATO_0000006 +http://purl.obolibrary.org/obo/PATO_0000007 +http://purl.obolibrary.org/obo/PATO_0000008 +http://purl.obolibrary.org/obo/PATO_0000009 +http://purl.obolibrary.org/obo/PATO_0000010 +http://purl.obolibrary.org/obo/PATO_0000011 +http://purl.obolibrary.org/obo/PATO_0000012 +http://purl.obolibrary.org/obo/PATO_0000013 +http://purl.obolibrary.org/obo/PATO_0000014 +http://purl.obolibrary.org/obo/PATO_0000015 +http://purl.obolibrary.org/obo/PATO_0000016 +http://purl.obolibrary.org/obo/PATO_0000017 +http://purl.obolibrary.org/obo/PATO_0000018 +http://purl.obolibrary.org/obo/PATO_0000019 +http://purl.obolibrary.org/obo/PATO_0000020 +http://purl.obolibrary.org/obo/PATO_0000021 +http://purl.obolibrary.org/obo/PATO_0000022 +http://purl.obolibrary.org/obo/PATO_0000023 +http://purl.obolibrary.org/obo/PATO_0000024 +http://purl.obolibrary.org/obo/PATO_0000025 +http://purl.obolibrary.org/obo/PATO_0000026 +http://purl.obolibrary.org/obo/PATO_0000027 +http://purl.obolibrary.org/obo/PATO_0000028 +http://purl.obolibrary.org/obo/PATO_0000029 +http://purl.obolibrary.org/obo/PATO_0000030 +http://purl.obolibrary.org/obo/PATO_0000031 +http://purl.obolibrary.org/obo/PATO_0000032 +http://purl.obolibrary.org/obo/PATO_0000033 +http://purl.obolibrary.org/obo/PATO_0000034 +http://purl.obolibrary.org/obo/PATO_0000035 +http://purl.obolibrary.org/obo/PATO_0000036 +http://purl.obolibrary.org/obo/PATO_0000037 +http://purl.obolibrary.org/obo/PATO_0000038 +http://purl.obolibrary.org/obo/PATO_0000039 +http://purl.obolibrary.org/obo/PATO_0000040 +http://purl.obolibrary.org/obo/PATO_0000041 +http://purl.obolibrary.org/obo/PATO_0000042 +http://purl.obolibrary.org/obo/PATO_0000043 +http://purl.obolibrary.org/obo/PATO_0000044 +http://purl.obolibrary.org/obo/PATO_0000045 +http://purl.obolibrary.org/obo/PATO_0000046 +http://purl.obolibrary.org/obo/PATO_0000047 +http://purl.obolibrary.org/obo/PATO_0000048 +http://purl.obolibrary.org/obo/PATO_0000049 +http://purl.obolibrary.org/obo/PATO_0000050 +http://purl.obolibrary.org/obo/PATO_0000051 +http://purl.obolibrary.org/obo/PATO_0000052 +http://purl.obolibrary.org/obo/PATO_0000053 +http://purl.obolibrary.org/obo/PATO_0000054 +http://purl.obolibrary.org/obo/PATO_0000055 +http://purl.obolibrary.org/obo/PATO_0000056 +http://purl.obolibrary.org/obo/PATO_0000057 +http://purl.obolibrary.org/obo/PATO_0000058 +http://purl.obolibrary.org/obo/PATO_0000059 +http://purl.obolibrary.org/obo/PATO_0000060 +http://purl.obolibrary.org/obo/PATO_0000061 +http://purl.obolibrary.org/obo/PATO_0000062 +http://purl.obolibrary.org/obo/PATO_0000063 +http://purl.obolibrary.org/obo/PATO_0000064 +http://purl.obolibrary.org/obo/PATO_0000065 +http://purl.obolibrary.org/obo/PATO_0000066 +http://purl.obolibrary.org/obo/PATO_0000067 +http://purl.obolibrary.org/obo/PATO_0000068 +http://purl.obolibrary.org/obo/PATO_0000069 +http://purl.obolibrary.org/obo/PATO_0000070 +http://purl.obolibrary.org/obo/PATO_0000071 +http://purl.obolibrary.org/obo/PATO_0000072 +http://purl.obolibrary.org/obo/PATO_0000073 +http://purl.obolibrary.org/obo/PATO_0000074 +http://purl.obolibrary.org/obo/PATO_0000075 +http://purl.obolibrary.org/obo/PATO_0000076 +http://purl.obolibrary.org/obo/PATO_0000077 +http://purl.obolibrary.org/obo/PATO_0000078 +http://purl.obolibrary.org/obo/PATO_0000079 +http://purl.obolibrary.org/obo/PATO_0000080 +http://purl.obolibrary.org/obo/PATO_0000081 +http://purl.obolibrary.org/obo/PATO_0000082 +http://purl.obolibrary.org/obo/PATO_0000083 +http://purl.obolibrary.org/obo/PATO_0000084 +http://purl.obolibrary.org/obo/PATO_0000085 +http://purl.obolibrary.org/obo/PATO_0000086 +http://purl.obolibrary.org/obo/PATO_0000087 +http://purl.obolibrary.org/obo/PATO_0000088 +http://purl.obolibrary.org/obo/PATO_0000089 +http://purl.obolibrary.org/obo/PATO_0000090 +http://purl.obolibrary.org/obo/PATO_0000091 +http://purl.obolibrary.org/obo/PATO_0000092 +http://purl.obolibrary.org/obo/PATO_0000093 +http://purl.obolibrary.org/obo/PATO_0000094 +http://purl.obolibrary.org/obo/PATO_0000095 +http://purl.obolibrary.org/obo/PATO_0000096 +http://purl.obolibrary.org/obo/PATO_0000097 +http://purl.obolibrary.org/obo/PATO_0000098 +http://purl.obolibrary.org/obo/PATO_0000099 +http://purl.obolibrary.org/obo/PATO_0000100 +http://purl.obolibrary.org/obo/PATO_0000101 +http://purl.obolibrary.org/obo/PATO_0000102 +http://purl.obolibrary.org/obo/PATO_0000103 +http://purl.obolibrary.org/obo/PATO_0000104 +http://purl.obolibrary.org/obo/PATO_0000105 +http://purl.obolibrary.org/obo/PATO_0000106 +http://purl.obolibrary.org/obo/PATO_0000107 +http://purl.obolibrary.org/obo/PATO_0000108 +http://purl.obolibrary.org/obo/PATO_0000109 +http://purl.obolibrary.org/obo/PATO_0000110 +http://purl.obolibrary.org/obo/PATO_0000111 +http://purl.obolibrary.org/obo/PATO_0000112 +http://purl.obolibrary.org/obo/PATO_0000113 +http://purl.obolibrary.org/obo/PATO_0000114 +http://purl.obolibrary.org/obo/PATO_0000115 +http://purl.obolibrary.org/obo/PATO_0000116 +http://purl.obolibrary.org/obo/PATO_0000117 +http://purl.obolibrary.org/obo/PATO_0000118 +http://purl.obolibrary.org/obo/PATO_0000119 +http://purl.obolibrary.org/obo/PATO_0000120 +http://purl.obolibrary.org/obo/PATO_0000121 +http://purl.obolibrary.org/obo/PATO_0000122 +http://purl.obolibrary.org/obo/PATO_0000123 +http://purl.obolibrary.org/obo/PATO_0000124 +http://purl.obolibrary.org/obo/PATO_0000125 +http://purl.obolibrary.org/obo/PATO_0000126 +http://purl.obolibrary.org/obo/PATO_0000127 +http://purl.obolibrary.org/obo/PATO_0000128 +http://purl.obolibrary.org/obo/PATO_0000129 +http://purl.obolibrary.org/obo/PATO_0000130 +http://purl.obolibrary.org/obo/PATO_0000131 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+http://purl.obolibrary.org/obo/PATO_0010002 +http://purl.obolibrary.org/obo/PATO_0010003 +http://purl.obolibrary.org/obo/PATO_0010004 +http://purl.obolibrary.org/obo/PATO_0010005 +http://purl.obolibrary.org/obo/PATO_0015001 +http://purl.obolibrary.org/obo/PATO_0015002 +http://purl.obolibrary.org/obo/PATO_0015003 +http://purl.obolibrary.org/obo/PATO_0015004 +http://purl.obolibrary.org/obo/PATO_0015005 +http://purl.obolibrary.org/obo/PATO_0015006 +http://purl.obolibrary.org/obo/PATO_0015007 +http://purl.obolibrary.org/obo/PATO_0015008 +http://purl.obolibrary.org/obo/PATO_0015009 +http://purl.obolibrary.org/obo/PATO_0015010 +http://purl.obolibrary.org/obo/PATO_0015011 +http://purl.obolibrary.org/obo/PATO_0015012 +http://purl.obolibrary.org/obo/PATO_0015013 +http://purl.obolibrary.org/obo/PATO_0015014 +http://purl.obolibrary.org/obo/PATO_0015015 +http://purl.obolibrary.org/obo/PATO_0015016 +http://purl.obolibrary.org/obo/PATO_0015017 +http://purl.obolibrary.org/obo/PATO_0015018 +http://purl.obolibrary.org/obo/PATO_0015019 +http://purl.obolibrary.org/obo/PATO_0015020 +http://purl.obolibrary.org/obo/PATO_0015021 +http://purl.obolibrary.org/obo/PATO_0015022 +http://purl.obolibrary.org/obo/PATO_0015023 +http://purl.obolibrary.org/obo/PATO_0015024 +http://purl.obolibrary.org/obo/PATO_0015025 +http://purl.obolibrary.org/obo/PATO_0015026 +http://purl.obolibrary.org/obo/PATO_0015027 +http://purl.obolibrary.org/obo/PATO_0015028 +http://purl.obolibrary.org/obo/PATO_0015029 +http://purl.obolibrary.org/obo/PATO_0015030 +http://purl.obolibrary.org/obo/PATO_0020000 +http://purl.obolibrary.org/obo/PATO_0020001 +http://purl.obolibrary.org/obo/PATO_0020002 +http://purl.obolibrary.org/obo/PATO_0025000 +http://purl.obolibrary.org/obo/PATO_0025001 +http://purl.obolibrary.org/obo/PATO_0025002 +http://purl.obolibrary.org/obo/PATO_0030000 +http://purl.obolibrary.org/obo/PATO_0030001 +http://purl.obolibrary.org/obo/PATO_0030002 +http://purl.obolibrary.org/obo/PATO_0030003 +http://purl.obolibrary.org/obo/PATO_0030004 +http://purl.obolibrary.org/obo/PATO_0030005 +http://purl.obolibrary.org/obo/PATO_0030006 +http://purl.obolibrary.org/obo/PATO_0030007 +http://purl.obolibrary.org/obo/PATO_0040000 +http://purl.obolibrary.org/obo/PATO_0040001 +http://purl.obolibrary.org/obo/PATO_0040002 +http://purl.obolibrary.org/obo/PATO_0040003 +http://purl.obolibrary.org/obo/PATO_0040004 +http://purl.obolibrary.org/obo/PATO_0040005 +http://purl.obolibrary.org/obo/PATO_0040006 +http://purl.obolibrary.org/obo/PATO_0040007 +http://purl.obolibrary.org/obo/PATO_0040008 +http://purl.obolibrary.org/obo/PATO_0040009 +http://purl.obolibrary.org/obo/PATO_0040010 +http://purl.obolibrary.org/obo/PATO_0040011 +http://purl.obolibrary.org/obo/PATO_0040012 +http://purl.obolibrary.org/obo/PATO_0040013 +http://purl.obolibrary.org/obo/PATO_0040014 +http://purl.obolibrary.org/obo/PATO_0040015 +http://purl.obolibrary.org/obo/PATO_0040016 +http://purl.obolibrary.org/obo/PATO_0040017 +http://purl.obolibrary.org/obo/PATO_0040019 +http://purl.obolibrary.org/obo/PATO_0040020 +http://purl.obolibrary.org/obo/PATO_0040025 +http://purl.obolibrary.org/obo/PATO_0045000 +http://purl.obolibrary.org/obo/PATO_0045001 +http://purl.obolibrary.org/obo/PATO_0045002 +http://purl.obolibrary.org/obo/PATO_0045003 +http://purl.obolibrary.org/obo/PATO_0045004 +http://purl.obolibrary.org/obo/PATO_0045005 +http://purl.obolibrary.org/obo/PATO_0045006 +http://purl.obolibrary.org/obo/PATO_0045007 +http://purl.obolibrary.org/obo/PATO_0045008 +http://purl.obolibrary.org/obo/PATO_0045009 +http://purl.obolibrary.org/obo/PATO_0045010 +http://purl.obolibrary.org/obo/PATO_0045011 +http://purl.obolibrary.org/obo/PATO_0045012 +http://purl.obolibrary.org/obo/PATO_0045013 +http://purl.obolibrary.org/obo/PATO_0045014 +http://purl.obolibrary.org/obo/PATO_0045015 +http://purl.obolibrary.org/obo/PATO_0045016 +http://purl.obolibrary.org/obo/PATO_0045017 +http://purl.obolibrary.org/obo/PATO_0045018 +http://purl.obolibrary.org/obo/PATO_0045019 +http://purl.obolibrary.org/obo/PATO_0045020 +http://purl.obolibrary.org/obo/PATO_0045021 +http://purl.obolibrary.org/obo/PATO_0045022 +http://purl.obolibrary.org/obo/PATO_0045023 +http://purl.obolibrary.org/obo/PATO_0045024 +http://purl.obolibrary.org/obo/PATO_0045025 +http://purl.obolibrary.org/obo/PATO_0045026 +http://purl.obolibrary.org/obo/PATO_0045027 +http://purl.obolibrary.org/obo/PATO_0045028 +http://purl.obolibrary.org/obo/PATO_0045029 +http://purl.obolibrary.org/obo/PATO_0045030 +http://purl.obolibrary.org/obo/PATO_0045031 +http://purl.obolibrary.org/obo/PATO_0045032 +http://purl.obolibrary.org/obo/PATO_0045033 +http://purl.obolibrary.org/obo/PATO_0045034 +http://purl.obolibrary.org/obo/PATO_0045035 +http://purl.obolibrary.org/obo/PATO_0045036 +http://purl.obolibrary.org/obo/PATO_0045037 +http://purl.obolibrary.org/obo/PATO_0045038 +http://purl.obolibrary.org/obo/PATO_0045039 +http://purl.obolibrary.org/obo/PATO_0045040 +http://purl.obolibrary.org/obo/PATO_0045041 +http://purl.obolibrary.org/obo/PATO_0045042 +http://purl.obolibrary.org/obo/PATO_0045043 +http://purl.obolibrary.org/obo/PATO_0045044 +http://purl.obolibrary.org/obo/PATO_0045045 +http://purl.obolibrary.org/obo/PATO_0045046 +http://purl.obolibrary.org/obo/PATO_0045047 +http://purl.obolibrary.org/obo/PATO_0045048 +http://purl.obolibrary.org/obo/PATO_0045049 +http://purl.obolibrary.org/obo/PATO_0045050 +http://purl.obolibrary.org/obo/PATO_0045051 +http://purl.obolibrary.org/obo/PATO_0045052 +http://purl.obolibrary.org/obo/PATO_0045053 +http://purl.obolibrary.org/obo/PATO_0045054 +http://purl.obolibrary.org/obo/PATO_0045055 +http://purl.obolibrary.org/obo/PATO_0045056 +http://purl.obolibrary.org/obo/PATO_0045057 +http://purl.obolibrary.org/obo/PATO_0045058 +http://purl.obolibrary.org/obo/PATO_0045059 +http://purl.obolibrary.org/obo/PATO_0045060 +http://purl.obolibrary.org/obo/PATO_0045061 +http://purl.obolibrary.org/obo/PATO_0045062 +http://purl.obolibrary.org/obo/PATO_0045063 +http://purl.obolibrary.org/obo/PATO_0045064 +http://purl.obolibrary.org/obo/PATO_0045065 +http://purl.obolibrary.org/obo/PATO_0045066 +http://purl.obolibrary.org/obo/PATO_0045067 +http://purl.obolibrary.org/obo/PATO_0045068 +http://purl.obolibrary.org/obo/PATO_0045069 +http://purl.obolibrary.org/obo/PATO_0045070 +http://purl.obolibrary.org/obo/PATO_0045071 +http://purl.obolibrary.org/obo/PATO_0045072 +http://purl.obolibrary.org/obo/PATO_0045073 +http://purl.obolibrary.org/obo/PATO_0045074 +http://purl.obolibrary.org/obo/PATO_0045075 +http://purl.obolibrary.org/obo/PATO_0045076 +http://purl.obolibrary.org/obo/PATO_0045077 +http://purl.obolibrary.org/obo/PATO_0045078 +http://purl.obolibrary.org/obo/PATO_0045079 +http://purl.obolibrary.org/obo/PATO_0045080 +http://purl.obolibrary.org/obo/PATO_0045081 +http://purl.obolibrary.org/obo/PATO_0045082 +http://purl.obolibrary.org/obo/PATO_0045083 +http://purl.obolibrary.org/obo/PATO_0045084 +http://purl.obolibrary.org/obo/PATO_0045085 +http://purl.obolibrary.org/obo/PATO_0045086 +http://purl.obolibrary.org/obo/PATO_0045087 +http://purl.obolibrary.org/obo/PATO_0045088 +http://purl.obolibrary.org/obo/PATO_0045089 +http://purl.obolibrary.org/obo/PATO_0045090 +http://purl.obolibrary.org/obo/PATO_0045091 +http://purl.obolibrary.org/obo/PATO_0045092 +http://purl.obolibrary.org/obo/PATO_0045093 +http://purl.obolibrary.org/obo/PATO_0045094 +http://purl.obolibrary.org/obo/PATO_0050000 +http://purl.obolibrary.org/obo/PATO_0050001 +http://purl.obolibrary.org/obo/PATO_0055001 +http://purl.obolibrary.org/obo/PATO_0055002 +http://purl.obolibrary.org/obo/PATO_0060001 +http://purl.obolibrary.org/obo/PATO_0060002 +http://purl.obolibrary.org/obo/PATO_0060003 +http://purl.obolibrary.org/obo/pato#abnormal_slim +http://purl.obolibrary.org/obo/pato#absent_slim +http://purl.obolibrary.org/obo/pato#attribute_slim +http://purl.obolibrary.org/obo/pato#cell_quality +http://purl.obolibrary.org/obo/pato#correlates_with +http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to +http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to +http://purl.obolibrary.org/obo/pato#directly_associated_with +http://purl.obolibrary.org/obo/pato#disposition_slim +http://purl.obolibrary.org/obo/pato#has_cross_section +http://purl.obolibrary.org/obo/pato#has_dividend_entity +http://purl.obolibrary.org/obo/pato#has_dividend_quality +http://purl.obolibrary.org/obo/pato#has_divisor_entity +http://purl.obolibrary.org/obo/pato#has_divisor_quality +http://purl.obolibrary.org/obo/pato#has_ratio_quality +http://purl.obolibrary.org/obo/pato#has_relative_magnitude +http://purl.obolibrary.org/obo/pato#hpo_slim +http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to +http://purl.obolibrary.org/obo/pato#inversely_associated_with +http://purl.obolibrary.org/obo/pato#is_magnitude_of +http://purl.obolibrary.org/obo/pato#is_measurement_of +http://purl.obolibrary.org/obo/pato#is_unit_of +http://purl.obolibrary.org/obo/pato#mpath_slim +http://purl.obolibrary.org/obo/pato#realized_by +http://purl.obolibrary.org/obo/pato#reciprocal_of +http://purl.obolibrary.org/obo/pato#relational_slim +http://purl.obolibrary.org/obo/pato#scalar_slim +http://purl.obolibrary.org/obo/pato#similar_in_magnitude_relative_to +http://purl.obolibrary.org/obo/pato#singly_occurring_form_of +http://purl.obolibrary.org/obo/pato#towards +http://purl.obolibrary.org/obo/pato#value_slim +term +http://www.geneontology.org/formats/oboInOwl#SubsetProperty +http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty From 770f599c96b2fcdd0a03997d45406fc2b358a923 Mon Sep 17 00:00:00 2001 From: matentzn Date: Fri, 13 Sep 2019 12:05:41 +0100 Subject: [PATCH 04/13] Update .travis.yml --- .travis.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.travis.yml b/.travis.yml index e1ffd402..040f12d4 100644 --- a/.travis.yml +++ b/.travis.yml @@ -26,4 +26,5 @@ notifications: email: - obo-ci-reports-all@groups.io - cjmungall@lbl.gov + - davidos@ebi.ac.uk From b8f304977d1fe53e61ba8afc76116a99bde265e1 Mon Sep 17 00:00:00 2001 From: matentzn Date: Tue, 29 Oct 2019 08:21:22 +0000 Subject: [PATCH 05/13] Updated Makefile --- src/ontology/Makefile | 17 +++++++++-------- src/ontology/run.sh | 2 +- src/sparql/pato_terms.sparql | 2 -- 3 files changed, 10 insertions(+), 11 deletions(-) diff --git a/src/ontology/Makefile b/src/ontology/Makefile index 88f5c179..c854fa0b 100644 --- a/src/ontology/Makefile +++ b/src/ontology/Makefile @@ -1,7 +1,7 @@ # ---------------------------------------- # Makefile for pato # Generated using ontology-starter-kit -# ODK Version: v1.2.18 +# ODK Version: v1.2.19 # ---------------------------------------- # @@ -26,7 +26,7 @@ REPORT_FAIL_ON = none OBO_FORMAT_OPTIONS = SPARQL_VALIDATION_CHECKS = equivalent-classes trailing-whitespace owldef-self-reference xref-syntax nolabels SPARQL_EXPORTS = basic-report class-count-by-prefix edges xrefs obsoletes synonyms -ODK_VERSION = v1.2.18 +ODK_VERSION = v1.2.19 TODAY ?= $(shell date +%Y-%m-%d) OBODATE ?= $(shell date +'%d:%m:%Y %H:%M') @@ -43,7 +43,7 @@ RELEASE_ARTEFACTS = $(sort base simple full base full) .PHONY: .FORCE all: odkversion all_imports all_main all_subsets sparql_test all_reports all_assets test: odkversion sparql_test all_reports - $(ROBOT) reason --input $(SRC) --reasoner ELK --equivalent-classes-allowed all --output test.owl && rm test.owl && echo "Success" + $(ROBOT) reason --input $(SRC) --reasoner ELK --equivalent-classes-allowed all --exclude-tautologies structural --output test.owl && rm test.owl && echo "Success" odkversion: echo "ODK Makefile version: $(ODK_VERSION) (this is the version of the ODK with which this Makefile was generated, not the version of the ODK you are running)" &&\ @@ -211,7 +211,7 @@ $(ONT)-base.owl: $(SRC) $(OTHER_SRC) # Full: The full artefacts with imports merged, reasoned $(ONT)-full.owl: $(SRC) $(OTHER_SRC) $(ROBOT) merge --input $< \ - reason --reasoner ELK --equivalent-classes-allowed all \ + reason --reasoner ELK --equivalent-classes-allowed all --exclude-tautologies structural \ relax \ reduce -r ELK \ annotate --ontology-iri $(ONTBASE)/$@ --version-iri $(ONTBASE)/releases/$(TODAY)/$@ --output $@.tmp.owl && mv $@.tmp.owl $@ @@ -234,7 +234,7 @@ $(SIMPLESEED): $(SRCMERGED) $(ONTOLOGYTERMS) $(ONT)-simple.owl: $(SRC) $(OTHER_SRC) $(SIMPLESEED) $(ROBOT) merge --input $< $(patsubst %, -i %, $(OTHER_SRC)) \ - reason --reasoner ELK --equivalent-classes-allowed all \ + reason --reasoner ELK --equivalent-classes-allowed all --exclude-tautologies structural \ relax \ remove --axioms equivalent \ relax \ @@ -276,6 +276,8 @@ imports/%_import.obo: imports/%_import.owl @if [ $(IMP) = true ]; then $(ROBOT) convert --check false -i $< -f obo -o $@.tmp.obo && mv $@.tmp.obo $@; fi imports/%_import.json: imports/%_import.owl @if [ $(IMP) = true ]; then $(ROBOT) convert --check false -i $< -f json -o $@.tmp.json && mv $@.tmp.json $@; fi + + # ---------------------------------------- # Mirroring upstream ontologies # ---------------------------------------- @@ -285,7 +287,6 @@ IMP=true # Global parameter to bypass import generation MIR=true # Global parameter to bypass mirror generation - ## ONTOLOGY: ro ## Copy of ro is re-downloaded whenever source changes mirror/ro.trigger: $(SRC) @@ -301,7 +302,7 @@ mirror/ro.owl: mirror/ro.trigger mirror/chebi.trigger: $(SRC) mirror/chebi.owl: mirror/chebi.trigger - @if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(ROBOT) convert -I $(URIBASE)/chebi.owl -o $@.tmp.owl && mv $@.tmp.owl $@; fi + @if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(ROBOT) convert -I http://purl.obolibrary.org/obo/chebi.owl.gz -o $@.tmp.owl && mv $@.tmp.owl $@; fi .PRECIOUS: mirror/%.owl @@ -370,7 +371,7 @@ sparql_test: $(SRC) # ROBOT report # ---------------------------------------- reports/%-obo-report.tsv: % - $(ROBOT) report -i $< --fail-on $(REPORT_FAIL_ON) -o $@ + $(ROBOT) report -i $< --fail-on $(REPORT_FAIL_ON) --print 5 -o $@ # ---------------------------------------- # Sparql queries: Exports diff --git a/src/ontology/run.sh b/src/ontology/run.sh index e9c85e83..24126d21 100644 --- a/src/ontology/run.sh +++ b/src/ontology/run.sh @@ -9,4 +9,4 @@ # we therefore map the whole repo (../..) to a docker volume. # # See README-editors.md for more details. -docker run -v $PWD/../../:/work -w /work/src/ontology -e ROBOT_JAVA_ARGS='-Xmx8G' --rm -ti obolibrary/odkfull "$@" \ No newline at end of file +docker run -v $PWD/../../:/work -w /work/src/ontology -e ROBOT_JAVA_ARGS='-Xmx8G' --rm -ti obolibrary/odkfull "$@" \ No newline at end of file diff --git a/src/sparql/pato_terms.sparql b/src/sparql/pato_terms.sparql index 26d409ba..6fb0874f 100644 --- a/src/sparql/pato_terms.sparql +++ b/src/sparql/pato_terms.sparql @@ -5,5 +5,3 @@ WHERE { { ?term ?p2 ?o2 . } FILTER(isIRI(?term) && (regex(str(?term), UCASE("pato_")))) } - - From 9bb35310cb8bec9527ff64a59d385f82a6f86469 Mon Sep 17 00:00:00 2001 From: matentzn Date: Tue, 29 Oct 2019 09:08:02 +0000 Subject: [PATCH 06/13] Update pato.obo --- pato.obo | 1561 ++++++++++++++++++++++++++++++++++++------------------ 1 file changed, 1045 insertions(+), 516 deletions(-) diff --git a/pato.obo b/pato.obo index 88602a5f..ee942a4c 100644 --- a/pato.obo +++ b/pato.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2019-09-13 +data-version: pato/releases/2019-09-13/pato-base.owl date: 07:02:2018 10:27 saved-by: segerdel auto-generated-by: OBO-Edit 2.3.1 @@ -14,7 +14,7 @@ subsetdef: relational_slim "Relational slim: types of quality that require an ad subsetdef: scalar_slim "Scalar slim" subsetdef: value_slim "Value slim" default-namespace: quality -ontology: pato +ontology: pato/pato-base [Term] id: PATO:0000000 @@ -1721,6 +1721,7 @@ synonym: "abolished" EXACT [] synonym: "incomplete" RELATED [] is_a: PATO:0002052 ! decreased occurrence is_a: PATO:0002324 ! offset quality +relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal [Term] id: PATO:0000298 @@ -1735,7 +1736,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000004 ! mobility disjoint_from: PATO:0000300 ! immobile -property_value: RO:0002604 PATO:0000300 +relationship: is_opposite_of PATO:0000300 ! immobile [Term] id: PATO:0000300 @@ -1745,7 +1746,7 @@ subset: disposition_slim subset: value_slim synonym: "fixed" RELATED [] is_a: PATO:0000004 ! mobility -property_value: RO:0002604 PATO:0000299 +relationship: is_opposite_of PATO:0000299 ! mobile [Term] id: PATO:0000301 @@ -1766,7 +1767,9 @@ synonym: "fast speed" RELATED [] synonym: "high speed" EXACT [] is_a: PATO:0000008 ! speed is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0000304 +intersection_of: PATO:0000008 ! speed +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000304 ! decreased speed [Term] id: PATO:0000304 @@ -1777,7 +1780,9 @@ synonym: "slow" EXACT [] synonym: "slow speed" EXACT [] is_a: PATO:0000008 ! speed is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0000303 +intersection_of: PATO:0000008 ! speed +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000303 ! increased speed [Term] id: PATO:0000305 @@ -1800,7 +1805,7 @@ name: old def: "An age which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0000011 ! age -property_value: RO:0002604 PATO:0000309 +relationship: is_opposite_of PATO:0000309 ! young [Term] id: PATO:0000309 @@ -1808,7 +1813,7 @@ name: young def: "An age which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0000011 ! age -property_value: RO:0002604 PATO:0000308 +relationship: is_opposite_of PATO:0000308 ! old [Term] id: PATO:0000310 @@ -1926,7 +1931,7 @@ def: "A color brightness which is relatively low." [PATOC:MAH] subset: value_slim synonym: "dark" EXACT [] is_a: PATO:0000016 ! color brightness -property_value: RO:0002604 PATO:0000665 +relationship: is_opposite_of PATO:0000665 ! high brightness [Term] id: PATO:0000328 @@ -1936,7 +1941,7 @@ subset: value_slim synonym: "dull" RELATED [] synonym: "pale" EXACT [] is_a: PATO:0000017 ! color saturation -property_value: RO:0002604 PATO:0001229 +relationship: is_opposite_of PATO:0001229 ! high saturation [Term] id: PATO:0000329 @@ -1954,7 +1959,7 @@ subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0000060 ! spatial pattern -property_value: RO:0002604 PATO:0000440 +relationship: is_opposite_of PATO:0000440 ! regular spatial pattern [Term] id: PATO:0000331 @@ -1962,7 +1967,7 @@ name: discolored def: "A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color." [Dictionary.com:Dictionary.com] subset: value_slim is_a: PATO:0000019 ! color pattern -property_value: RO:0002604 PATO:0000336 +relationship: is_opposite_of PATO:0000336 ! colored [Term] id: PATO:0000333 @@ -1985,7 +1990,7 @@ def: "A color quality inhering in a bearer by virtue of the bearer's having colo subset: value_slim synonym: "pigmented" RELATED [] is_a: PATO:0000014 ! color -property_value: RO:0002604 PATO:0000331 +relationship: is_opposite_of PATO:0000331 ! discolored [Term] id: PATO:0000337 @@ -2035,7 +2040,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0000021 ! compatibility disjoint_from: PATO:0000345 ! incompatible -property_value: RO:0002604 PATO:0000345 +relationship: is_opposite_of PATO:0000345 ! incompatible [Term] id: PATO:0000345 @@ -2045,7 +2050,7 @@ subset: disposition_slim subset: relational_slim subset: value_slim is_a: PATO:0000021 ! compatibility -property_value: RO:0002604 PATO:0000344 +relationship: is_opposite_of PATO:0000344 ! compatible [Term] id: PATO:0000346 @@ -2148,7 +2153,7 @@ name: down def: "A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction -property_value: RO:0002604 PATO:0000370 +relationship: is_opposite_of PATO:0000370 ! up [Term] id: PATO:0000366 @@ -2180,7 +2185,7 @@ name: up def: "A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction -property_value: RO:0002604 PATO:0000365 +relationship: is_opposite_of PATO:0000365 ! down [Term] id: PATO:0000371 @@ -2206,7 +2211,9 @@ subset: value_slim synonym: "long distance" RELATED [] is_a: PATO:0000040 ! distance is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0000375 +intersection_of: PATO:0000040 ! distance +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000375 ! decreased distance [Term] id: PATO:0000375 @@ -2217,7 +2224,9 @@ subset: value_slim synonym: "short distance" RELATED [] is_a: PATO:0000040 ! distance is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0000374 +intersection_of: PATO:0000040 ! distance +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000374 ! increased distance [Term] id: PATO:0000376 @@ -2249,7 +2258,9 @@ synonym: "frequent" RELATED [] synonym: "high frequency" EXACT [] is_a: PATO:0000044 ! frequency is_a: PATO:0000912 ! increased rate -property_value: RO:0002604 PATO:0000381 +intersection_of: PATO:0000044 ! frequency +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000381 ! decreased frequency [Term] id: PATO:0000381 @@ -2261,7 +2272,9 @@ synonym: "infrequent" RELATED [] synonym: "low frequency" EXACT [] is_a: PATO:0000044 ! frequency is_a: PATO:0000911 ! decreased rate -property_value: RO:0002604 PATO:0000380 +intersection_of: PATO:0000044 ! frequency +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000380 ! increased frequency [Term] id: PATO:0000382 @@ -2301,7 +2314,9 @@ synonym: "impenetrable" RELATED [] synonym: "tough" RELATED [] is_a: PATO:0000048 ! hardness is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0000387 +intersection_of: PATO:0000048 ! hardness +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000387 ! soft [Term] id: PATO:0000387 @@ -2312,7 +2327,9 @@ subset: mpath_slim subset: value_slim is_a: PATO:0000048 ! hardness is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0000386 +intersection_of: PATO:0000048 ! hardness +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000386 ! hard [Term] id: PATO:0000388 @@ -2327,7 +2344,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0001309 ! duration -property_value: RO:0002604 PATO:0001863 +relationship: is_opposite_of PATO:0001863 ! chronic [Term] id: PATO:0000390 @@ -2413,7 +2430,7 @@ synonym: "ramified" EXACT [] synonym: "ramiform" EXACT [] is_a: PATO:0002009 ! branchiness disjoint_from: PATO:0000414 ! unbranched -property_value: RO:0002604 PATO:0000414 +relationship: is_opposite_of PATO:0000414 ! unbranched [Term] id: PATO:0000403 @@ -2438,7 +2455,7 @@ synonym: "helicoidal" RELATED [] synonym: "helix-shaped" RELATED [] synonym: "spiral" EXACT [] is_a: PATO:0001794 ! coiling -property_value: RO:0002604 PATO:0000415 +relationship: is_opposite_of PATO:0000415 ! uncoiled [Term] id: PATO:0000405 @@ -2517,7 +2534,7 @@ subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0002009 ! branchiness -property_value: RO:0002604 PATO:0000402 +relationship: is_opposite_of PATO:0000402 ! branched [Term] id: PATO:0000415 @@ -2527,7 +2544,7 @@ subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0001794 ! coiling -property_value: RO:0002604 PATO:0000404 +relationship: is_opposite_of PATO:0000404 ! coiled [Term] id: PATO:0000416 @@ -2556,7 +2573,7 @@ def: "A nutritional quality inhering in a bearer by virtue of the bearer's inabi subset: disposition_slim subset: value_slim is_a: PATO:0000056 ! trophic quality -property_value: RO:0002604 PATO:0000423 +relationship: is_opposite_of PATO:0000423 ! prototrophic [Term] id: PATO:0000423 @@ -2565,7 +2582,7 @@ def: "A nutritional quality inhering in a bearer by virtue of the bearer's abili subset: disposition_slim subset: value_slim is_a: PATO:0000056 ! trophic quality -property_value: RO:0002604 PATO:0000422 +relationship: is_opposite_of PATO:0000422 ! auxotrophic [Term] id: PATO:0000424 @@ -2586,7 +2603,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence -property_value: RO:0002604 PATO:0000428 +relationship: is_opposite_of PATO:0000428 ! sporadic [Term] id: PATO:0000428 @@ -2596,7 +2613,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence -property_value: RO:0002604 PATO:0000427 +relationship: is_opposite_of PATO:0000427 ! recurrent [Term] id: PATO:0000430 @@ -2650,7 +2667,7 @@ subset: value_slim synonym: "constant" RELATED [] synonym: "uniform" EXACT [] is_a: PATO:0001303 ! variability -property_value: RO:0002604 PATO:0001227 +relationship: is_opposite_of PATO:0001227 ! variant [Term] id: PATO:0000439 @@ -2665,7 +2682,7 @@ subset: mpath_slim subset: relational_slim subset: value_slim is_a: PATO:0000060 ! spatial pattern -property_value: RO:0002604 PATO:0000330 +relationship: is_opposite_of PATO:0000330 ! irregular spatial pattern [Term] id: PATO:0000441 @@ -2794,7 +2811,7 @@ synonym: "atypia" RELATED [] synonym: "atypical" RELATED [] synonym: "defective" RELATED [] is_a: PATO:0000069 ! deviation(from_normal) -property_value: RO:0002604 PATO:0000461 +relationship: is_opposite_of PATO:0000461 ! normal [Term] id: PATO:0000461 @@ -2805,7 +2822,7 @@ subset: mpath_slim subset: value_slim synonym: "average" RELATED [] is_a: PATO:0000068 ! qualitative -property_value: RO:0002604 PATO:0000460 +relationship: is_opposite_of PATO:0000460 ! abnormal [Term] id: PATO:0000462 @@ -2820,9 +2837,9 @@ synonym: "absence" EXACT [] synonym: "absent from organism" EXACT [] is_a: PATO:0000070 ! amount disjoint_from: PATO:0000467 ! present +relationship: is_opposite_of PATO:0000467 ! present relationship: reciprocal_of PATO:0001558 ! lacking processual parts relationship: reciprocal_of PATO:0002000 ! lacks all parts of type -property_value: RO:0002604 PATO:0000467 [Term] id: PATO:0000463 @@ -2832,7 +2849,7 @@ subset: mpath_slim subset: value_slim synonym: "distinct" RELATED [] is_a: PATO:0001998 ! conspicuousness -property_value: RO:0002604 PATO:0000464 +relationship: is_opposite_of PATO:0000464 ! inconspicuous [Term] id: PATO:0000464 @@ -2842,7 +2859,7 @@ subset: mpath_slim subset: value_slim synonym: "faint" RELATED [] is_a: PATO:0001998 ! conspicuousness -property_value: RO:0002604 PATO:0000463 +relationship: is_opposite_of PATO:0000463 ! conspicuous [Term] id: PATO:0000465 @@ -2862,7 +2879,7 @@ subset: absent_slim subset: value_slim synonym: "present in organism" RELATED [] is_a: PATO:0000070 ! amount -property_value: RO:0002604 PATO:0000462 +relationship: is_opposite_of PATO:0000462 ! absent [Term] id: PATO:0000469 @@ -2883,7 +2900,9 @@ synonym: "present in greater numbers in organism" EXACT [] synonym: "supernumerary" EXACT [] is_a: PATO:0000467 ! present is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0001997 +intersection_of: PATO:0000070 ! amount +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001997 ! decreased amount [Term] id: PATO:0000471 @@ -2975,7 +2994,7 @@ subset: value_slim synonym: "responsive" EXACT [] is_a: PATO:0000077 ! response to disjoint_from: PATO:0000488 ! unresponsive to -property_value: RO:0002604 PATO:0000488 +relationship: is_opposite_of PATO:0000488 ! unresponsive to [Term] id: PATO:0000488 @@ -2986,7 +3005,7 @@ subset: relational_slim subset: value_slim synonym: "unresponsive" EXACT [] is_a: PATO:0000077 ! response to -property_value: RO:0002604 PATO:0000487 +relationship: is_opposite_of PATO:0000487 ! responsive to [Term] id: PATO:0000489 @@ -3047,7 +3066,9 @@ synonym: "prolonged period" RELATED [] synonym: "slow time" RELATED [] is_a: PATO:0001309 ! duration is_a: PATO:0002304 ! increased process quality -property_value: RO:0002604 PATO:0000499 +intersection_of: PATO:0001309 ! duration +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000499 ! decreased duration [Term] id: PATO:0000499 @@ -3062,7 +3083,9 @@ synonym: "low period" EXACT [] synonym: "shortened period" EXACT [] is_a: PATO:0001309 ! duration is_a: PATO:0002302 ! decreased process quality -property_value: RO:0002604 PATO:0000498 +intersection_of: PATO:0001309 ! duration +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000498 ! increased duration [Term] id: PATO:0000500 @@ -3099,7 +3122,7 @@ name: arrhythmic def: "A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm." [PATOC:GVG] subset: value_slim is_a: PATO:0000078 ! rhythm quality -property_value: RO:0002604 PATO:0000505 +relationship: is_opposite_of PATO:0000505 ! rhythmic [Term] id: PATO:0000505 @@ -3107,7 +3130,7 @@ name: rhythmic def: "A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm." [PATOC:GVG] subset: value_slim is_a: PATO:0000078 ! rhythm quality -property_value: RO:0002604 PATO:0000504 +relationship: is_opposite_of PATO:0000504 ! arrhythmic [Term] id: PATO:0000506 @@ -3154,7 +3177,7 @@ subset: value_slim synonym: "insensitive" EXACT [] synonym: "resistant" RELATED [] is_a: PATO:0000085 ! sensitivity toward -property_value: RO:0002604 PATO:0000516 +relationship: is_opposite_of PATO:0000516 ! sensitive toward [Term] id: PATO:0000514 @@ -3181,7 +3204,7 @@ subset: relational_slim subset: value_slim synonym: "sensitive" EXACT [] is_a: PATO:0000085 ! sensitivity toward -property_value: RO:0002604 PATO:0000513 +relationship: is_opposite_of PATO:0000513 ! insensitive toward [Term] id: PATO:0000517 @@ -3337,7 +3360,7 @@ subset: value_slim synonym: "photoresistant" RELATED [] is_a: PATO:0000927 ! photosensitivity disjoint_from: PATO:0000547 ! photosensitive -property_value: RO:0002604 PATO:0000547 +relationship: is_opposite_of PATO:0000547 ! photosensitive [Term] id: PATO:0000547 @@ -3346,7 +3369,7 @@ def: "A photosensitivity quality inhering in a bearer by virtue of the bearer's subset: disposition_slim subset: value_slim is_a: PATO:0000927 ! photosensitivity -property_value: RO:0002604 PATO:0000546 +relationship: is_opposite_of PATO:0000546 ! photoinsensitive [Term] id: PATO:0000548 @@ -3463,7 +3486,9 @@ subset: value_slim synonym: "short" RELATED [] is_a: PATO:0000119 ! height is_a: PATO:0000587 ! decreased size -property_value: RO:0002604 PATO:0000570 +intersection_of: PATO:0000119 ! height +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000570 ! increased height [Term] id: PATO:0000570 @@ -3473,7 +3498,9 @@ subset: value_slim synonym: "tall" RELATED [] is_a: PATO:0000119 ! height is_a: PATO:0000586 ! increased size -property_value: RO:0002604 PATO:0000569 +intersection_of: PATO:0000119 ! height +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000569 ! decreased height [Term] id: PATO:0000571 @@ -3493,7 +3520,9 @@ subset: value_slim synonym: "long" EXACT [] is_a: PATO:0000122 ! length is_a: PATO:0000586 ! increased size -property_value: RO:0002604 PATO:0000574 +intersection_of: PATO:0000122 ! length +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000574 ! decreased length [Term] id: PATO:0000574 @@ -3505,7 +3534,9 @@ synonym: "shortened" RELATED [] synonym: "stubby" RELATED [] is_a: PATO:0000122 ! length is_a: PATO:0000587 ! decreased size -property_value: RO:0002604 PATO:0000573 +intersection_of: PATO:0000122 ! length +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000573 ! increased length [Term] id: PATO:0000575 @@ -3541,7 +3572,9 @@ synonym: "heavy" EXACT [] synonym: "high weight" EXACT [] is_a: PATO:0000128 ! weight is_a: PATO:0002245 ! increased force -property_value: RO:0002604 PATO:0000583 +intersection_of: PATO:0000128 ! weight +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000583 ! decreased weight [Term] id: PATO:0000583 @@ -3552,7 +3585,9 @@ synonym: "light weight" EXACT [] synonym: "low weight" EXACT [] is_a: PATO:0000128 ! weight is_a: PATO:0002246 ! decreased force -property_value: RO:0002604 PATO:0000582 +intersection_of: PATO:0000128 ! weight +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000582 ! increased weight [Term] id: PATO:0000584 @@ -3562,7 +3597,7 @@ subset: mpath_slim subset: value_slim synonym: "hypertrophy" NARROW [] is_a: PATO:0000595 ! increased volume -property_value: RO:0002604 PATO:0000585 +relationship: is_opposite_of PATO:0000585 ! hypotrophic [Term] id: PATO:0000585 @@ -3573,7 +3608,7 @@ subset: mpath_slim subset: value_slim synonym: "shrunken" EXACT [] is_a: PATO:0000596 ! decreased volume -property_value: RO:0002604 PATO:0000584 +relationship: is_opposite_of PATO:0000584 ! hypertrophic [Term] id: PATO:0000586 @@ -3588,7 +3623,9 @@ synonym: "great" RELATED [] synonym: "large" RELATED [] is_a: PATO:0000117 ! size is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0000587 +intersection_of: PATO:0000117 ! size +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000587 ! decreased size [Term] id: PATO:0000587 @@ -3602,7 +3639,9 @@ synonym: "tiny" RELATED [] synonym: "underdeveloped" NARROW [] is_a: PATO:0000117 ! size is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0000586 +intersection_of: PATO:0000117 ! size +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000586 ! increased size [Term] id: PATO:0000588 @@ -3634,7 +3673,9 @@ synonym: "thick" RELATED [] synonym: "thickened" EXACT [] is_a: PATO:0000586 ! increased size is_a: PATO:0000915 ! thickness -property_value: RO:0002604 PATO:0000592 +intersection_of: PATO:0000915 ! thickness +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000592 ! decreased thickness [Term] id: PATO:0000592 @@ -3647,7 +3688,9 @@ synonym: "slender" RELATED [] synonym: "thin" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0000915 ! thickness -property_value: RO:0002604 PATO:0000591 +intersection_of: PATO:0000915 ! thickness +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000591 ! increased thickness [Term] id: PATO:0000593 @@ -3669,7 +3712,9 @@ synonym: "high volume" EXACT [] synonym: "large volume" RELATED [] is_a: PATO:0000586 ! increased size is_a: PATO:0000918 ! volume -property_value: RO:0002604 PATO:0000596 +intersection_of: PATO:0000918 ! volume +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000596 ! decreased volume [Term] id: PATO:0000596 @@ -3681,7 +3726,9 @@ synonym: "low volume" EXACT [] synonym: "small volume" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0000918 ! volume -property_value: RO:0002604 PATO:0000595 +intersection_of: PATO:0000918 ! volume +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000595 ! increased volume [Term] id: PATO:0000597 @@ -3701,7 +3748,9 @@ subset: value_slim synonym: "narrow" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0000921 ! width -property_value: RO:0002604 PATO:0000600 +intersection_of: PATO:0000921 ! width +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000600 ! increased width [Term] id: PATO:0000600 @@ -3713,7 +3762,9 @@ synonym: "wide" RELATED [] synonym: "wide/broad" RELATED [] is_a: PATO:0000586 ! increased size is_a: PATO:0000921 ! width -property_value: RO:0002604 PATO:0000599 +intersection_of: PATO:0000921 ! width +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000599 ! decreased width [Term] id: PATO:0000601 @@ -3760,7 +3811,7 @@ subset: value_slim synonym: "blocked" RELATED [] is_a: PATO:0000136 ! closure disjoint_from: PATO:0000610 ! open -property_value: RO:0002604 PATO:0000610 +relationship: is_opposite_of PATO:0000610 ! open [Term] id: PATO:0000609 @@ -3775,7 +3826,7 @@ name: open def: "A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view." [answers.com:answers.com] subset: value_slim is_a: PATO:0000136 ! closure -property_value: RO:0002604 PATO:0000608 +relationship: is_opposite_of PATO:0000608 ! closed [Term] id: PATO:0000611 @@ -3793,7 +3844,7 @@ name: disoriented def: "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation." [PATOC:GVG] subset: value_slim is_a: PATO:0000330 ! irregular spatial pattern -property_value: RO:0002604 PATO:0000614 +relationship: is_opposite_of PATO:0000614 ! oriented [Term] id: PATO:0000614 @@ -3801,7 +3852,7 @@ name: oriented def: "A pattern where all the repeated elements are oriented in the same direction." [PATOC:MAH] subset: value_slim is_a: PATO:0000440 ! regular spatial pattern -property_value: RO:0002604 PATO:0000613 +relationship: is_opposite_of PATO:0000613 ! disoriented [Term] id: PATO:0000615 @@ -3844,7 +3895,7 @@ name: crowded def: "A positional quality inhering in a bearer by virtue of the bearer's being overfilled." [WordNet:WordNet] subset: value_slim is_a: PATO:0000140 ! position -property_value: RO:0002604 PATO:0000633 +relationship: is_opposite_of PATO:0000633 ! uncrowded [Term] id: PATO:0000620 @@ -3962,7 +4013,7 @@ name: uncrowded def: "A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled." [PATOC:GVG] subset: value_slim is_a: PATO:0000060 ! spatial pattern -property_value: RO:0002604 PATO:0000619 +relationship: is_opposite_of PATO:0000619 ! crowded [Term] id: PATO:0000634 @@ -4013,7 +4064,7 @@ is_a: PATO:0002037 ! degeneration disjoint_from: PATO:0001623 ! atrophied disjoint_from: PATO:0002038 ! non-degenerate relationship: has_part PATO:0000585 ! hypotrophic -property_value: RO:0002604 PATO:0002038 +relationship: is_opposite_of PATO:0002038 ! non-degenerate [Term] id: PATO:0000640 @@ -4042,7 +4093,7 @@ synonym: "fused to" EXACT [] synonym: "joined with" RELATED [] synonym: "merged with" RELATED [] is_a: PATO:0000141 ! structure -property_value: RO:0002604 PATO:0000651 +relationship: is_opposite_of PATO:0000651 ! unfused from [Term] id: PATO:0000643 @@ -4062,7 +4113,7 @@ subset: value_slim synonym: "hyperplasia" EXACT [] synonym: "overdeveloped" RELATED [] is_a: PATO:0000586 ! increased size -property_value: RO:0002604 PATO:0000645 +relationship: is_opposite_of PATO:0000645 ! hypoplastic [Term] id: PATO:0000645 @@ -4075,7 +4126,7 @@ synonym: "hypoplasia" EXACT [] synonym: "underdeveloped" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0002290 ! aplastic/hypoplastic -property_value: RO:0002604 PATO:0000644 +relationship: is_opposite_of PATO:0000644 ! hyperplastic [Term] id: PATO:0000646 @@ -4110,7 +4161,7 @@ subset: relational_slim subset: value_slim synonym: "unfused" EXACT [] is_a: PATO:0000141 ! structure -property_value: RO:0002604 PATO:0000642 +relationship: is_opposite_of PATO:0000642 ! fused with [Term] id: PATO:0000652 @@ -4184,7 +4235,7 @@ def: "A color brightness which is relatively high." [PATOC:MAH] subset: value_slim synonym: "light" EXACT [] is_a: PATO:0000016 ! color brightness -property_value: RO:0002604 PATO:0000327 +relationship: is_opposite_of PATO:0000327 ! low brightness [Term] id: PATO:0000666 @@ -4292,7 +4343,7 @@ name: asynchronous def: "A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase." [WordNet:WordNet] subset: value_slim is_a: PATO:0000057 ! occurrence -property_value: RO:0002604 PATO:0000695 +relationship: is_opposite_of PATO:0000695 ! synchronous [Term] id: PATO:0000689 @@ -4302,7 +4353,7 @@ def: "A quality of a single process inhering in a bearer by virtue of the bearer subset: value_slim synonym: "uninterrupted" EXACT [] is_a: PATO:0000057 ! occurrence -property_value: RO:0002604 PATO:0000690 +relationship: is_opposite_of PATO:0000690 ! discontinuous [Term] id: PATO:0000690 @@ -4313,7 +4364,7 @@ subset: value_slim synonym: "intermittent" RELATED [] synonym: "interrupted" EXACT [] is_a: PATO:0000057 ! occurrence -property_value: RO:0002604 PATO:0000689 +relationship: is_opposite_of PATO:0000689 ! continuous [Term] id: PATO:0000692 @@ -4345,7 +4396,7 @@ name: synchronous def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase." [PATOC:GVG] subset: value_slim is_a: PATO:0000057 ! occurrence -property_value: RO:0002604 PATO:0000688 +relationship: is_opposite_of PATO:0000688 ! asynchronous [Term] id: PATO:0000696 @@ -4376,7 +4427,7 @@ subset: mpath_slim subset: value_slim synonym: "coarse" EXACT [] is_a: PATO:0000150 ! texture -property_value: RO:0002604 PATO:0000701 +relationship: is_opposite_of PATO:0000701 ! smooth [Term] id: PATO:0000701 @@ -4385,7 +4436,7 @@ def: "A texture quality inhering in a bearer by virtue of the bearer's processin subset: mpath_slim subset: value_slim is_a: PATO:0000150 ! texture -property_value: RO:0002604 PATO:0000700 +relationship: is_opposite_of PATO:0000700 ! rough [Term] id: PATO:0000702 @@ -4418,7 +4469,9 @@ subset: value_slim synonym: "high threshold" EXACT [] is_a: PATO:0000152 ! threshold is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0000708 +intersection_of: PATO:0000152 ! threshold +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000708 ! decreased threshold [Term] id: PATO:0000708 @@ -4431,7 +4484,9 @@ subset: value_slim synonym: "low threshold" EXACT [] is_a: PATO:0000152 ! threshold is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0000706 +intersection_of: PATO:0000152 ! threshold +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000706 ! increased threshold [Term] id: PATO:0000710 @@ -4671,7 +4726,7 @@ def: "A balance quality inhering in a bearer by virtue of the bearer's having ba subset: value_slim is_a: PATO:0000185 ! balance disjoint_from: PATO:0000758 ! unbalanced -property_value: RO:0002604 PATO:0000758 +relationship: is_opposite_of PATO:0000758 ! unbalanced [Term] id: PATO:0000758 @@ -4679,7 +4734,7 @@ name: unbalanced def: "A balance quality inhering in a bearer by virtue of the bearer's lacking balance." [PATOC:GVG] subset: value_slim is_a: PATO:0000185 ! balance -property_value: RO:0002604 PATO:0000757 +relationship: is_opposite_of PATO:0000757 ! balanced [Term] id: PATO:0000759 @@ -4698,7 +4753,9 @@ subset: value_slim synonym: "hyperactive" EXACT [] is_a: PATO:0001707 ! behavioural active is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0000761 +intersection_of: PATO:0001707 ! behavioural active +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000761 ! decreased behavioural activity [Term] id: PATO:0000761 @@ -4708,7 +4765,9 @@ subset: value_slim synonym: "hypoactive" EXACT [] is_a: PATO:0001707 ! behavioural active is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0000760 +intersection_of: PATO:0001707 ! behavioural active +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000760 ! increased behavioural activity [Term] id: PATO:0000762 @@ -4773,7 +4832,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000188 ! coordination disjoint_from: PATO:0000770 ! uncoordinated -property_value: RO:0002604 PATO:0000770 +relationship: is_opposite_of PATO:0000770 ! uncoordinated [Term] id: PATO:0000770 @@ -4782,7 +4841,7 @@ def: "A coordination quality of inhering in a bearer by virtue of the bearer's l subset: disposition_slim subset: value_slim is_a: PATO:0000188 ! coordination -property_value: RO:0002604 PATO:0000769 +relationship: is_opposite_of PATO:0000769 ! coordinated [Term] id: PATO:0000771 @@ -5390,7 +5449,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000277 ! female fertility disjoint_from: PATO:0000892 ! female sterile -property_value: RO:0002604 PATO:0000892 +relationship: is_opposite_of PATO:0000892 ! female sterile [Term] id: PATO:0000889 @@ -5406,7 +5465,7 @@ subset: value_slim synonym: "male infertile" RELATED [] is_a: PATO:0000956 ! sterile disjoint_from: PATO:0000891 ! male fertile -property_value: RO:0002604 PATO:0000891 +relationship: is_opposite_of PATO:0000891 ! male fertile [Term] id: PATO:0000891 @@ -5415,7 +5474,7 @@ def: "A male fertility quality inhering in a male by virtue of the bearer's bein subset: disposition_slim subset: value_slim is_a: PATO:0000279 ! male fertility -property_value: RO:0002604 PATO:0000890 +relationship: is_opposite_of PATO:0000890 ! male sterile [Term] id: PATO:0000892 @@ -5425,7 +5484,7 @@ subset: disposition_slim subset: value_slim synonym: "female infertile" RELATED [] is_a: PATO:0000956 ! sterile -property_value: RO:0002604 PATO:0000888 +relationship: is_opposite_of PATO:0000888 ! female fertile [Term] id: PATO:0000893 @@ -5530,7 +5589,9 @@ subset: value_slim synonym: "slow rate" EXACT [] is_a: PATO:0000161 ! rate is_a: PATO:0002302 ! decreased process quality -property_value: RO:0002604 PATO:0000912 +intersection_of: PATO:0000161 ! rate +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000912 ! increased rate [Term] id: PATO:0000912 @@ -5542,7 +5603,9 @@ synonym: "fast rate" EXACT [] synonym: "high rate" EXACT [] is_a: PATO:0000161 ! rate is_a: PATO:0002304 ! increased process quality -property_value: RO:0002604 PATO:0000911 +intersection_of: PATO:0000161 ! rate +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000911 ! decreased rate [Term] id: PATO:0000913 @@ -5690,7 +5753,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0002264 ! organization quality disjoint_from: PATO:0000938 ! organized -property_value: RO:0002604 PATO:0000938 +relationship: is_opposite_of PATO:0000938 ! organized [Term] id: PATO:0000938 @@ -5699,7 +5762,7 @@ def: "A structural quality inhering in a bearer by virtue of the bearer's exhibi subset: mpath_slim subset: value_slim is_a: PATO:0002264 ! organization quality -property_value: RO:0002604 PATO:0000937 +relationship: is_opposite_of PATO:0000937 ! disorganized [Term] id: PATO:0000939 @@ -5830,7 +5893,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000274 ! fertility disjoint_from: PATO:0000956 ! sterile -property_value: RO:0002604 PATO:0000956 +relationship: is_opposite_of PATO:0000956 ! sterile [Term] id: PATO:0000956 @@ -5839,7 +5902,7 @@ def: "A fertility quality inhering in a bearer by virtue of the bearer's being i subset: disposition_slim subset: value_slim is_a: PATO:0000274 ! fertility -property_value: RO:0002604 PATO:0000955 +relationship: is_opposite_of PATO:0000955 ! fertile [Term] id: PATO:0000957 @@ -5883,7 +5946,7 @@ synonym: "clouding" RELATED [] synonym: "cloudy" RELATED [] synonym: "non-transparent" EXACT [] is_a: PATO:0000957 ! opacity -property_value: RO:0002604 PATO:0000964 +relationship: is_opposite_of PATO:0000964 ! transparent [Term] id: PATO:0000964 @@ -5894,7 +5957,7 @@ subset: value_slim synonym: "clear" EXACT [] synonym: "hyaline" EXACT [] is_a: PATO:0000957 ! opacity -property_value: RO:0002604 PATO:0000963 +relationship: is_opposite_of PATO:0000963 ! opaque [Term] id: PATO:0000965 @@ -6015,7 +6078,7 @@ subset: value_slim synonym: "porous" RELATED [] is_a: PATO:0000970 ! permeability disjoint_from: PATO:0000983 ! impermeable -property_value: RO:0002604 PATO:0000983 +relationship: is_opposite_of PATO:0000983 ! impermeable [Term] id: PATO:0000983 @@ -6024,7 +6087,7 @@ def: "A permeability quality inhering in a bearer by virtue of the bearer's bein subset: disposition_slim subset: value_slim is_a: PATO:0000970 ! permeability -property_value: RO:0002604 PATO:0000982 +relationship: is_opposite_of PATO:0000982 ! permeable [Term] id: PATO:0000984 @@ -6034,7 +6097,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000973 ! porosity disjoint_from: PATO:0000985 ! non-porous -property_value: RO:0002604 PATO:0000985 +relationship: is_opposite_of PATO:0000985 ! non-porous [Term] id: PATO:0000985 @@ -6043,7 +6106,7 @@ def: "A porosity quality inhering in a bearer by virtue of the bearer's being in subset: disposition_slim subset: value_slim is_a: PATO:0000973 ! porosity -property_value: RO:0002604 PATO:0000984 +relationship: is_opposite_of PATO:0000984 ! porous [Term] id: PATO:0000986 @@ -6391,7 +6454,7 @@ subset: disposition_slim subset: relational_slim synonym: "susceptibility" EXACT [] is_a: PATO:0000085 ! sensitivity toward -property_value: RO:0002604 PATO:0001046 +relationship: is_opposite_of PATO:0001046 ! resistance to [Term] id: PATO:0001044 @@ -6413,7 +6476,7 @@ subset: relational_slim subset: scalar_slim synonym: "resistance" EXACT [] is_a: PATO:0001995 ! organismal quality -property_value: RO:0002604 PATO:0001043 +relationship: is_opposite_of PATO:0001043 ! susceptibility toward [Term] id: PATO:0001047 @@ -6965,7 +7028,7 @@ subset: value_slim synonym: "susceptible" EXACT [] is_a: PATO:0001043 ! susceptibility toward disjoint_from: PATO:0001153 ! insusceptible toward -property_value: RO:0002604 PATO:0001153 +relationship: is_opposite_of PATO:0001153 ! insusceptible toward [Term] id: PATO:0001153 @@ -6976,7 +7039,7 @@ subset: relational_slim subset: value_slim synonym: "insusceptible" EXACT [] is_a: PATO:0001043 ! susceptibility toward -property_value: RO:0002604 PATO:0001152 +relationship: is_opposite_of PATO:0001152 ! susceptible toward [Term] id: PATO:0001154 @@ -6984,7 +7047,7 @@ name: elongated def: "A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width." [WordNet:WordNet] subset: value_slim is_a: PATO:0000052 ! shape -property_value: RO:0002604 PATO:0002364 +relationship: is_opposite_of PATO:0002364 ! shortened [Term] id: PATO:0001155 @@ -7036,7 +7099,9 @@ subset: value_slim synonym: "high concentration" EXACT [] is_a: PATO:0001159 ! concentrated is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001163 +intersection_of: PATO:0001159 ! concentrated +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001163 ! decreased concentration [Term] id: PATO:0001163 @@ -7047,7 +7112,9 @@ subset: value_slim synonym: "low concentration" EXACT [] is_a: PATO:0001159 ! concentrated is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001162 +intersection_of: PATO:0001159 ! concentrated +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001162 ! increased concentration [Term] id: PATO:0001164 @@ -7074,7 +7141,7 @@ def: "A structural quality inhering in a bearer by virtue of the bearer being ha subset: value_slim is_a: PATO:0001020 ! damage disjoint_from: PATO:0001168 ! undamaged -property_value: RO:0002604 PATO:0001168 +relationship: is_opposite_of PATO:0001168 ! undamaged [Term] id: PATO:0001168 @@ -7082,7 +7149,7 @@ name: undamaged def: "A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled." [WordNet:WordNet] subset: value_slim is_a: PATO:0001020 ! damage -property_value: RO:0002604 PATO:0001167 +relationship: is_opposite_of PATO:0001167 ! damaged [Term] id: PATO:0001170 @@ -7098,7 +7165,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0001031 ! elasticity disjoint_from: PATO:0001172 ! inelastic -property_value: RO:0002604 PATO:0001172 +relationship: is_opposite_of PATO:0001172 ! inelastic [Term] id: PATO:0001172 @@ -7108,7 +7175,7 @@ subset: disposition_slim subset: mpath_slim subset: value_slim is_a: PATO:0001031 ! elasticity -property_value: RO:0002604 PATO:0001171 +relationship: is_opposite_of PATO:0001171 ! elastic [Term] id: PATO:0001173 @@ -7239,7 +7306,9 @@ synonym: "hyperresponsive" EXACT [] synonym: "increased responsivity" EXACT [] is_a: PATO:0000487 ! responsive to is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001194 +intersection_of: PATO:0000487 ! responsive to +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001194 ! hyporesponsive to [Term] id: PATO:0001193 @@ -7262,7 +7331,9 @@ synonym: "decreased responsivity" EXACT [] synonym: "hyporesponsive" EXACT [] is_a: PATO:0000487 ! responsive to is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001192 +intersection_of: PATO:0000487 ! responsive to +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001192 ! hyperresponsive to [Term] id: PATO:0001195 @@ -7344,7 +7415,7 @@ subset: mpath_slim subset: value_slim synonym: "serrate" EXACT [] is_a: PATO:0001976 ! serration -property_value: RO:0002604 PATO:0001975 +relationship: is_opposite_of PATO:0001975 ! unserrated [Term] id: PATO:0001207 @@ -7452,7 +7523,7 @@ subset: relational_slim subset: value_slim synonym: "variable" EXACT [] is_a: PATO:0001303 ! variability -property_value: RO:0002604 PATO:0000438 +relationship: is_opposite_of PATO:0000438 ! invariant [Term] id: PATO:0001228 @@ -7467,7 +7538,7 @@ subset: value_slim synonym: "bright" EXACT [] synonym: "vivid" RELATED [] is_a: PATO:0000017 ! color saturation -property_value: RO:0002604 PATO:0000328 +relationship: is_opposite_of PATO:0000328 ! low saturation [Term] id: PATO:0001230 @@ -7497,7 +7568,7 @@ synonym: "dorsal" EXACT [] synonym: "posterior_to (human torso)" EXACT [] synonym: "superior_to (human head)" EXACT [] is_a: PATO:0000140 ! position -property_value: RO:0002604 PATO:0001234 +relationship: is_opposite_of PATO:0001234 ! distal to [Term] id: PATO:0001234 @@ -7508,7 +7579,7 @@ subset: relational_slim subset: value_slim synonym: "distal" EXACT [] is_a: PATO:0000140 ! position -property_value: RO:0002604 PATO:0001233 +relationship: is_opposite_of PATO:0001233 ! dorsal to [Term] id: PATO:0001235 @@ -8030,8 +8101,8 @@ id: PATO:0001304 name: variability of temperature def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change." [PATO:GVG] subset: attribute_slim -is_a: PATO:0001303 ! variability -relationship: towards PATO:0000146 ! temperature +intersection_of: PATO:0001303 ! variability +intersection_of: towards PATO:0000146 ! temperature [Term] id: PATO:0001305 @@ -8043,7 +8114,9 @@ synonym: "high temperature" EXACT [] synonym: "hot" EXACT [] is_a: PATO:0000146 ! temperature is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001306 +intersection_of: PATO:0000146 ! temperature +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001306 ! decreased temperature [Term] id: PATO:0001306 @@ -8055,7 +8128,9 @@ synonym: "cold" EXACT [] synonym: "low temperature" EXACT [] is_a: PATO:0000146 ! temperature is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001305 +intersection_of: PATO:0000146 ! temperature +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001305 ! increased temperature [Term] id: PATO:0001307 @@ -8063,9 +8138,9 @@ name: decreased variability of temperature def: "A variability of temperature which is relatively low." [PATOC:GVG] subset: value_slim synonym: "low variability of temperature" EXACT [] -is_a: PATO:0001314 ! variant temperature -is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0001308 +intersection_of: PATO:0001314 ! variant temperature +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001308 ! increased variability of temperature [Term] id: PATO:0001308 @@ -8073,9 +8148,9 @@ name: increased variability of temperature def: "A variability of temperature which is relatively high." [PATOC:GVG] subset: value_slim synonym: "high variability of temperature" EXACT [] -is_a: PATO:0001314 ! variant temperature -is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0001307 +intersection_of: PATO:0001314 ! variant temperature +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001307 ! decreased variability of temperature [Term] id: PATO:0001309 @@ -8103,7 +8178,9 @@ def: "A duration of temperature which is lesser relative to the normal or averag subset: value_slim is_a: PATO:0000499 ! decreased duration is_a: PATO:0001310 ! duration of temperature -property_value: RO:0002604 PATO:0001312 +intersection_of: PATO:0001310 ! duration of temperature +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001312 ! increased duration of temperature [Term] id: PATO:0001312 @@ -8113,7 +8190,9 @@ subset: value_slim synonym: "high duration of temperature" EXACT [] is_a: PATO:0000498 ! increased duration is_a: PATO:0001310 ! duration of temperature -property_value: RO:0002604 PATO:0001311 +intersection_of: PATO:0001310 ! duration of temperature +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001311 ! decreased duration of temperature [Term] id: PATO:0001313 @@ -8121,7 +8200,7 @@ name: invariant temperature def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature." [PATO:GVG] subset: relational_slim is_a: PATO:0001304 ! variability of temperature -property_value: RO:0002604 PATO:0001314 +relationship: is_opposite_of PATO:0001314 ! variant temperature [Term] id: PATO:0001314 @@ -8129,7 +8208,7 @@ name: variant temperature def: "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature." [PATO:GVG] subset: value_slim is_a: PATO:0001304 ! variability of temperature -property_value: RO:0002604 PATO:0001313 +relationship: is_opposite_of PATO:0001313 ! invariant temperature [Term] id: PATO:0001315 @@ -8161,7 +8240,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0000189 ! discrimination disjoint_from: PATO:0001319 ! discriminate -property_value: RO:0002604 PATO:0001319 +relationship: is_opposite_of PATO:0001319 ! discriminate [Term] id: PATO:0001319 @@ -8171,7 +8250,7 @@ subset: disposition_slim subset: relational_slim subset: value_slim is_a: PATO:0000189 ! discrimination -property_value: RO:0002604 PATO:0001318 +relationship: is_opposite_of PATO:0001318 ! indiscriminate [Term] id: PATO:0001320 @@ -8287,6 +8366,7 @@ def: "A quality of a process which ends later than the natural end time." [PATOC subset: value_slim is_a: PATO:0002304 ! increased process quality is_a: PATO:0002324 ! offset quality +relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal [Term] id: PATO:0001334 @@ -8460,7 +8540,7 @@ def: "A shape quality that obtains by virtue of the bearer having inward facing subset: cell_quality subset: value_slim is_a: PATO:0002005 ! concavity -property_value: RO:0002604 PATO:0001857 +relationship: is_opposite_of PATO:0001857 ! concave [Term] id: PATO:0001356 @@ -8521,7 +8601,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001662 ! fragility disjoint_from: PATO:0001716 ! non-fragile -property_value: RO:0002604 PATO:0001716 +relationship: is_opposite_of PATO:0001716 ! non-fragile [Term] id: PATO:0001364 @@ -8917,7 +8997,7 @@ name: structured def: "A structural quality inhering in a bearer by virtue of the bearer's having distinct structure." [PATOC:GVG] subset: value_slim is_a: PATO:0000141 ! structure -property_value: RO:0002604 PATO:0001412 +relationship: is_opposite_of PATO:0001412 ! unstructured [Term] id: PATO:0001412 @@ -8925,7 +9005,7 @@ name: unstructured def: "A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure." [PATOC:GVG] subset: value_slim is_a: PATO:0000141 ! structure -property_value: RO:0002604 PATO:0001411 +relationship: is_opposite_of PATO:0001411 ! structured [Term] id: PATO:0001413 @@ -8957,7 +9037,7 @@ name: regular duration def: "A duration which has regular start and/or end times." [PATOC:GVG] subset: value_slim is_a: PATO:0001309 ! duration -property_value: RO:0002604 PATO:0001417 +relationship: is_opposite_of PATO:0001417 ! irregular duration [Term] id: PATO:0001417 @@ -8965,7 +9045,7 @@ name: irregular duration def: "A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times." [PATOC:melissa] subset: value_slim is_a: PATO:0001309 ! duration -property_value: RO:0002604 PATO:0001416 +relationship: is_opposite_of PATO:0001416 ! regular duration [Term] id: PATO:0001418 @@ -9278,7 +9358,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001454 ! sensitivity to oxygen disjoint_from: PATO:0001456 ! anaerobic -property_value: RO:0002604 PATO:0001456 +relationship: is_opposite_of PATO:0001456 ! anaerobic [Term] id: PATO:0001456 @@ -9287,7 +9367,7 @@ def: "A quality inhering in a bearer by virtue of the bearer's independence on o subset: disposition_slim subset: value_slim is_a: PATO:0001454 ! sensitivity to oxygen -property_value: RO:0002604 PATO:0001455 +relationship: is_opposite_of PATO:0001455 ! aerobic [Term] id: PATO:0001457 @@ -9315,7 +9395,7 @@ def: "A sensitivity of a process inhering in a biological process by virtue of t subset: disposition_slim subset: value_slim is_a: PATO:0001458 ! sensitivity of a process to oxygen -property_value: RO:0002604 PATO:0001460 +relationship: is_opposite_of PATO:0001460 ! anaerobic (for occurrence) [Term] id: PATO:0001460 @@ -9324,7 +9404,7 @@ def: "A sensitivity of a process inhering in a biological process by virtue of t subset: disposition_slim subset: value_slim is_a: PATO:0001458 ! sensitivity of a process to oxygen -property_value: RO:0002604 PATO:0001459 +relationship: is_opposite_of PATO:0001459 ! aerobic (for occurrence) [Term] id: PATO:0001461 @@ -9426,7 +9506,9 @@ synonym: "low depth" EXACT [] synonym: "shallow" EXACT [] is_a: PATO:0000587 ! decreased size is_a: PATO:0001595 ! depth -property_value: RO:0002604 PATO:0001596 +intersection_of: PATO:0001595 ! depth +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001596 ! increased depth [Term] id: PATO:0001473 @@ -9453,7 +9535,9 @@ subset: value_slim synonym: "high position" RELATED [] is_a: PATO:0000140 ! position is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001476 +intersection_of: PATO:0000140 ! position +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001476 ! decreased position [Term] id: PATO:0001476 @@ -9463,7 +9547,9 @@ subset: value_slim synonym: "low position" RELATED [] is_a: PATO:0000140 ! position is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001475 +intersection_of: PATO:0000140 ! position +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001475 ! increased position [Term] id: PATO:0001477 @@ -9517,6 +9603,8 @@ synonym: "aplasia" EXACT [] synonym: "undeveloped" EXACT [] is_a: PATO:0002290 ! aplastic/hypoplastic is_a: PATO:0002291 ! agenesis +intersection_of: PATO:0002290 ! aplastic/hypoplastic +intersection_of: PATO:0002291 ! agenesis [Term] id: PATO:0001484 @@ -9537,7 +9625,7 @@ synonym: "compressed" EXACT [] synonym: "dense" RELATED [] synonym: "squashed" EXACT [] is_a: PATO:0000141 ! structure -property_value: RO:0002604 PATO:0002452 +relationship: is_opposite_of PATO:0002452 ! decondensed [Term] id: PATO:0001486 @@ -9593,7 +9681,7 @@ name: hypertrophic growth comment: This term will be obsoleted; Use GO:growth and PATO:rate. subset: value_slim is_a: PATO:0001492 ! growth rate -property_value: RO:0002604 PATO:0001494 +relationship: is_opposite_of PATO:0001494 ! hypotrophic growth [Term] id: PATO:0001494 @@ -9601,7 +9689,7 @@ name: hypotrophic growth comment: This term will be obsoleted; Use GO:growth and PATO:rate. subset: value_slim is_a: PATO:0001492 ! growth rate -property_value: RO:0002604 PATO:0001493 +relationship: is_opposite_of PATO:0001493 ! hypertrophic growth [Term] id: PATO:0001495 @@ -9657,7 +9745,7 @@ def: "A quality inhering in a bearer by virtue of the bearer's lacking complete subset: value_slim synonym: "underdeveloped" RELATED [] is_a: PATO:0000261 ! maturity -property_value: RO:0002604 PATO:0001701 +relationship: is_opposite_of PATO:0001701 ! mature [Term] id: PATO:0001502 @@ -9727,7 +9815,7 @@ def: "A functionality quality held by the bearer when the latter is able to perf subset: disposition_slim subset: value_slim is_a: PATO:0001509 ! functionality -property_value: RO:0002604 PATO:0001511 +relationship: is_opposite_of PATO:0001511 ! non-functional [Term] id: PATO:0001511 @@ -9741,7 +9829,7 @@ synonym: "disfunctional" EXACT [] synonym: "failure" RELATED [] synonym: "functional failure" EXACT [] is_a: PATO:0001509 ! functionality -property_value: RO:0002604 PATO:0001510 +relationship: is_opposite_of PATO:0001510 ! functional [Term] id: PATO:0001512 @@ -9943,7 +10031,7 @@ subset: value_slim synonym: "soluble" EXACT [] is_a: PATO:0001536 ! solubility disjoint_from: PATO:0001538 ! insoluble in -property_value: RO:0002604 PATO:0001538 +relationship: is_opposite_of PATO:0001538 ! insoluble in [Term] id: PATO:0001538 @@ -9954,7 +10042,7 @@ subset: relational_slim subset: value_slim synonym: "insoluble" EXACT [] is_a: PATO:0001536 ! solubility -property_value: RO:0002604 PATO:0001537 +relationship: is_opposite_of PATO:0001537 ! soluble in [Term] id: PATO:0001539 @@ -10002,7 +10090,7 @@ subset: disposition_slim subset: value_slim synonym: "bendy" EXACT [] is_a: PATO:0001543 ! flexibility -property_value: RO:0002604 PATO:0001545 +relationship: is_opposite_of PATO:0001545 ! inflexible [Term] id: PATO:0001545 @@ -10013,7 +10101,7 @@ subset: value_slim synonym: "stiff" EXACT [] synonym: "stiffness" RELATED [] is_a: PATO:0001543 ! flexibility -property_value: RO:0002604 PATO:0001544 +relationship: is_opposite_of PATO:0001544 ! flexible [Term] id: PATO:0001546 @@ -10050,7 +10138,9 @@ synonym: "high sensitivity toward" EXACT [] synonym: "increased sensitivity" EXACT [] is_a: PATO:0000516 ! sensitive toward is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001550 +intersection_of: PATO:0000516 ! sensitive toward +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001550 ! decreased sensitivity toward [Term] id: PATO:0001550 @@ -10063,7 +10153,9 @@ synonym: "decreased sensitivity" EXACT [] synonym: "low sensitivity toward" EXACT [] is_a: PATO:0000516 ! sensitive toward is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001549 +intersection_of: PATO:0000516 ! sensitive toward +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001549 ! increased sensitivity toward [Term] id: PATO:0001551 @@ -10075,7 +10167,9 @@ synonym: "high sensitivity of occurrent" EXACT [] synonym: "increased sensitivity of occurrent" EXACT [] is_a: PATO:0001457 ! sensitivity of a process is_a: PATO:0002304 ! increased process quality -property_value: RO:0002604 PATO:0001552 +intersection_of: PATO:0001457 ! sensitivity of a process +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001552 ! decreased sensitivity of a process [Term] id: PATO:0001552 @@ -10087,7 +10181,9 @@ synonym: "decreased sensitivity of occurrent" EXACT [] synonym: "low sensitivity of occurrent" EXACT [] is_a: PATO:0001457 ! sensitivity of a process is_a: PATO:0002302 ! decreased process quality -property_value: RO:0002604 PATO:0001551 +intersection_of: PATO:0001457 ! sensitivity of a process +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001551 ! increased sensitivity of a process [Term] id: PATO:0001553 @@ -10098,7 +10194,9 @@ subset: value_slim synonym: "high sensitivity of occurrent to oxygen" EXACT [] is_a: PATO:0001459 ! aerobic (for occurrence) is_a: PATO:0001551 ! increased sensitivity of a process -property_value: RO:0002604 PATO:0001554 +intersection_of: PATO:0001459 ! aerobic (for occurrence) +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001554 ! decreased sensitivity of a process to oxygen [Term] id: PATO:0001554 @@ -10109,7 +10207,9 @@ subset: value_slim synonym: "low sensitivity of occurrent to oxygen" EXACT [] is_a: PATO:0001459 ! aerobic (for occurrence) is_a: PATO:0001552 ! decreased sensitivity of a process -property_value: RO:0002604 PATO:0001553 +intersection_of: PATO:0001459 ! aerobic (for occurrence) +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001553 ! increased sensitivity of a process to oxygen [Term] id: PATO:0001555 @@ -10145,6 +10245,8 @@ subset: value_slim synonym: "having supernumerary functions" EXACT [] is_a: PATO:0001509 ! functionality is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001509 ! functionality +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal [Term] id: PATO:0001561 @@ -10165,7 +10267,9 @@ synonym: "low mass" EXACT [] synonym: "small mass" EXACT [] is_a: PATO:0000125 ! mass is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001563 +intersection_of: PATO:0000125 ! mass +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001563 ! increased mass [Term] id: PATO:0001563 @@ -10177,7 +10281,9 @@ synonym: "high mass" EXACT [] synonym: "large mass" EXACT [] is_a: PATO:0000125 ! mass is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001562 +intersection_of: PATO:0000125 ! mass +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001562 ! decreased mass [Term] id: PATO:0001564 @@ -10197,7 +10303,7 @@ synonym: "diffuse" EXACT [] synonym: "scattered" EXACT [] is_a: PATO:0000060 ! spatial pattern disjoint_from: PATO:0001629 ! aggregated -property_value: RO:0002604 PATO:0001567 +relationship: is_opposite_of PATO:0001567 ! undistributed [Term] id: PATO:0001567 @@ -10205,7 +10311,7 @@ name: undistributed def: "A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up." [WordNet:WordNet] subset: value_slim is_a: PATO:0000060 ! spatial pattern -property_value: RO:0002604 PATO:0001566 +relationship: is_opposite_of PATO:0001566 ! distributed [Term] id: PATO:0001570 @@ -10247,7 +10353,9 @@ subset: value_slim synonym: "low pressure" EXACT [] is_a: PATO:0001025 ! pressure is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001576 +intersection_of: PATO:0001025 ! pressure +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001576 ! increased pressure [Term] id: PATO:0001576 @@ -10257,7 +10365,9 @@ subset: value_slim synonym: "high pressure" EXACT [] is_a: PATO:0001025 ! pressure is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001575 +intersection_of: PATO:0001025 ! pressure +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001575 ! decreased pressure [Term] id: PATO:0001577 @@ -10268,7 +10378,9 @@ subset: value_slim synonym: "high permeability" EXACT [] is_a: PATO:0000982 ! permeable is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001578 +intersection_of: PATO:0000982 ! permeable +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001578 ! decreased permeability [Term] id: PATO:0001578 @@ -10279,7 +10391,9 @@ subset: value_slim synonym: "low permeability" EXACT [] is_a: PATO:0000982 ! permeable is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001577 +intersection_of: PATO:0000982 ! permeable +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001577 ! increased permeability [Term] id: PATO:0001579 @@ -10299,7 +10413,9 @@ subset: value_slim synonym: "high contractility" EXACT [] is_a: PATO:0001690 ! contractile is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001581 +intersection_of: PATO:0001690 ! contractile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001581 ! decreased contractility [Term] id: PATO:0001581 @@ -10310,7 +10426,9 @@ subset: value_slim synonym: "low contractility" EXACT [] is_a: PATO:0001690 ! contractile is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001580 +intersection_of: PATO:0001690 ! contractile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001580 ! increased contractility [Term] id: PATO:0001582 @@ -10325,9 +10443,9 @@ name: decreased variability def: "A variability which is relatively low." [PATO:GVG] subset: value_slim synonym: "low variability" EXACT [] -is_a: PATO:0001227 ! variant -is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0001584 +intersection_of: PATO:0001227 ! variant +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001584 ! increased variability [Term] id: PATO:0001584 @@ -10335,9 +10453,9 @@ name: increased variability def: "A variability which is relatively high." [PATO:GVG] subset: value_slim synonym: "high variability" EXACT [] -is_a: PATO:0001227 ! variant -is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0001583 +intersection_of: PATO:0001227 ! variant +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001583 ! decreased variability [Term] id: PATO:0001585 @@ -10363,9 +10481,9 @@ name: increased variability of rate def: "A variability of rate which is relatively high." [PATO:GVG] subset: value_slim synonym: "high variability of rate" EXACT [] -is_a: PATO:0001586 ! variability of rate -is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0001588 +intersection_of: PATO:0001586 ! variability of rate +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001588 ! decreased variability of rate [Term] id: PATO:0001588 @@ -10373,9 +10491,9 @@ name: decreased variability of rate def: "A variability of rate which is relatively low." [PATO:GVG] subset: value_slim synonym: "low variability of rate" EXACT [] -is_a: PATO:0001586 ! variability of rate -is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0001587 +intersection_of: PATO:0001586 ! variability of rate +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001587 ! increased variability of rate [Term] id: PATO:0001589 @@ -10408,7 +10526,9 @@ def: "A curvature which is relatively high." [PATO:GVG] subset: value_slim is_a: PATO:0000406 ! curved is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001593 +intersection_of: PATO:0000406 ! curved +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001593 ! decreased curvature [Term] id: PATO:0001593 @@ -10417,7 +10537,9 @@ def: "A curvature which is relatively low." [PATO:GVG] subset: value_slim is_a: PATO:0000406 ! curved is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001592 +intersection_of: PATO:0000406 ! curved +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001592 ! increased curvature [Term] id: PATO:0001594 @@ -10443,7 +10565,9 @@ subset: value_slim synonym: "deep" EXACT [] is_a: PATO:0000586 ! increased size is_a: PATO:0001595 ! depth -property_value: RO:0002604 PATO:0001472 +intersection_of: PATO:0001595 ! depth +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001472 ! decreased depth [Term] id: PATO:0001597 @@ -10504,7 +10628,9 @@ def: "A life span which is relatively high." [PATO:GVG] synonym: "high life span" EXACT [] is_a: PATO:0000050 ! life span is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001604 +intersection_of: PATO:0000050 ! life span +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001604 ! decreased life span [Term] id: PATO:0001604 @@ -10513,7 +10639,9 @@ def: "A life span which is relatively low." [PATO:GVG] synonym: "low life span" EXACT [] is_a: PATO:0000050 ! life span is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001603 +intersection_of: PATO:0000050 ! life span +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001603 ! increased life span [Term] id: PATO:0001605 @@ -10569,9 +10697,9 @@ name: increased variability of color def: "A variability of color which is relatively high." [PATO:GVG] subset: value_slim synonym: "high variability of color" EXACT [] -is_a: PATO:0001615 ! variant color -is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0001613 +intersection_of: PATO:0001615 ! variant color +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001613 ! decreased variability of color [Term] id: PATO:0001613 @@ -10579,9 +10707,9 @@ name: decreased variability of color def: "A variability of color which is relatively low." [PATO:GVG] subset: value_slim synonym: "low variability of color" EXACT [] -is_a: PATO:0001615 ! variant color -is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0001612 +intersection_of: PATO:0001615 ! variant color +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001612 ! increased variability of color [Term] id: PATO:0001614 @@ -10589,7 +10717,7 @@ name: invariant color def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color." [PATO:GVG] subset: value_slim is_a: PATO:0001611 ! variability of color -property_value: RO:0002604 PATO:0001615 +relationship: is_opposite_of PATO:0001615 ! variant color [Term] id: PATO:0001615 @@ -10597,7 +10725,7 @@ name: variant color def: "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour." [PATO:GVG] subset: value_slim is_a: PATO:0001611 ! variability of color -property_value: RO:0002604 PATO:0001614 +relationship: is_opposite_of PATO:0001614 ! invariant color [Term] id: PATO:0001617 @@ -10617,7 +10745,9 @@ subset: value_slim synonym: "high tonicity" EXACT [] is_a: PATO:0001439 ! tonicity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001619 +intersection_of: PATO:0001439 ! tonicity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001619 ! decreased tonicity [Term] id: PATO:0001619 @@ -10628,7 +10758,9 @@ subset: value_slim synonym: "low tonicity" EXACT [] is_a: PATO:0001439 ! tonicity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001618 +intersection_of: PATO:0001439 ! tonicity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001618 ! increased tonicity [Term] id: PATO:0001620 @@ -10647,7 +10779,9 @@ subset: value_slim synonym: "low turgor" EXACT [] is_a: PATO:0001620 ! turgor is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001622 +intersection_of: PATO:0001620 ! turgor +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001622 ! increased turgor [Term] id: PATO:0001622 @@ -10658,7 +10792,9 @@ subset: value_slim synonym: "high turgor" EXACT [] is_a: PATO:0001620 ! turgor is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001621 +intersection_of: PATO:0001620 ! turgor +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001621 ! decreased turgor [Term] id: PATO:0001623 @@ -10688,7 +10824,9 @@ synonym: "low functionality" EXACT [] synonym: "partial functionality" EXACT [] is_a: PATO:0001510 ! functional is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001625 +intersection_of: PATO:0001510 ! functional +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001625 ! increased functionality [Term] id: PATO:0001625 @@ -10699,7 +10837,9 @@ subset: value_slim synonym: "high functionality" EXACT [] is_a: PATO:0001510 ! functional is_a: PATO:0001559 ! having extra function -property_value: RO:0002604 PATO:0001624 +intersection_of: PATO:0001510 ! functional +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001624 ! decreased functionality [Term] id: PATO:0001626 @@ -10717,7 +10857,7 @@ def: "A wholeness quality inhering in a bearer by virtue of the bearer's has eno subset: value_slim synonym: "adequate" RELATED [] is_a: PATO:0001626 ! sufficiency -property_value: RO:0002604 PATO:0001628 +relationship: is_opposite_of PATO:0001628 ! insufficient [Term] id: PATO:0001628 @@ -10726,7 +10866,7 @@ def: "A wholeness quality inhering in a bearer by virtue of the bearer's lacks e subset: value_slim synonym: "inadequate" RELATED [] is_a: PATO:0001626 ! sufficiency -property_value: RO:0002604 PATO:0001627 +relationship: is_opposite_of PATO:0001627 ! sufficient [Term] id: PATO:0001629 @@ -10782,7 +10922,7 @@ def: "A necessity quality (continuant) inhering in a bearer by virtue of the bea subset: value_slim is_a: PATO:0001634 ! necessity (continuant) disjoint_from: PATO:0001636 ! unnecessary (continuant) -property_value: RO:0002604 PATO:0001636 +relationship: is_opposite_of PATO:0001636 ! unnecessary (continuant) [Term] id: PATO:0001636 @@ -10790,7 +10930,7 @@ name: unnecessary (continuant) def: "A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable." [WordNet:WordNet] subset: value_slim is_a: PATO:0001634 ! necessity (continuant) -property_value: RO:0002604 PATO:0001635 +relationship: is_opposite_of PATO:0001635 ! necessary (continuant) [Term] id: PATO:0001637 @@ -10805,7 +10945,7 @@ name: necessary (occurrent) def: "A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable." [PATO:GVG] subset: value_slim is_a: PATO:0001637 ! necessity of occurrent -property_value: RO:0002604 PATO:0001639 +relationship: is_opposite_of PATO:0001639 ! unnecessary (occurrent) [Term] id: PATO:0001639 @@ -10813,7 +10953,7 @@ name: unnecessary (occurrent) def: "A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable." [PATO:GVG] subset: value_slim is_a: PATO:0001637 ! necessity of occurrent -property_value: RO:0002604 PATO:0001638 +relationship: is_opposite_of PATO:0001638 ! necessary (occurrent) [Term] id: PATO:0001643 @@ -10867,7 +11007,9 @@ synonym: "high resistance to" EXACT [] synonym: "increased resistance" EXACT [] is_a: PATO:0001178 ! resistant to is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001651 +intersection_of: PATO:0001178 ! resistant to +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001651 ! decreased resistance to [Term] id: PATO:0001651 @@ -10880,7 +11022,9 @@ synonym: "decreased resistance" EXACT [] synonym: "low resistance to" EXACT [] is_a: PATO:0001178 ! resistant to is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001650 +intersection_of: PATO:0001178 ! resistant to +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001650 ! increased resistance to [Term] id: PATO:0001652 @@ -10900,7 +11044,7 @@ subset: value_slim synonym: "aligned" EXACT [] synonym: "aligned to" RELATED [] is_a: PATO:0001652 ! alignment -property_value: RO:0002604 PATO:0001654 +relationship: is_opposite_of PATO:0001654 ! misaligned with [Term] id: PATO:0001654 @@ -10911,7 +11055,7 @@ subset: value_slim synonym: "misaligned" EXACT [] synonym: "unaligned with" EXACT [] is_a: PATO:0001652 ! alignment -property_value: RO:0002604 PATO:0001653 +relationship: is_opposite_of PATO:0001653 ! aligned with [Term] id: PATO:0001655 @@ -10931,7 +11075,9 @@ subset: value_slim synonym: "low osmolarity" EXACT [] is_a: PATO:0001655 ! osmolarity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001657 +intersection_of: PATO:0001655 ! osmolarity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001657 ! increased osmolarity [Term] id: PATO:0001657 @@ -10942,7 +11088,9 @@ subset: value_slim synonym: "high osmolarity" EXACT [] is_a: PATO:0001655 ! osmolarity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001656 +intersection_of: PATO:0001655 ! osmolarity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001656 ! decreased osmolarity [Term] id: PATO:0001658 @@ -10996,7 +11144,9 @@ subset: value_slim synonym: "high solubility" EXACT [] is_a: PATO:0001537 ! soluble in is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001664 +intersection_of: PATO:0001537 ! soluble in +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001664 ! decreased solubility [Term] id: PATO:0001664 @@ -11008,7 +11158,9 @@ subset: value_slim synonym: "low solubility" EXACT [] is_a: PATO:0001537 ! soluble in is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001663 +intersection_of: PATO:0001537 ! soluble in +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001663 ! increased solubility [Term] id: PATO:0001665 @@ -11053,7 +11205,9 @@ synonym: "high susceptibility toward" EXACT [] synonym: "increased susceptibility" EXACT [] is_a: PATO:0001152 ! susceptible toward is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001670 +intersection_of: PATO:0001152 ! susceptible toward +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001670 ! decreased susceptibility toward [Term] id: PATO:0001670 @@ -11066,7 +11220,9 @@ synonym: "decreased susceptibility" EXACT [] synonym: "low susceptibility toward" EXACT [] is_a: PATO:0001152 ! susceptible toward is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001669 +intersection_of: PATO:0001152 ! susceptible toward +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001669 ! increased susceptibility toward [Term] id: PATO:0001671 @@ -11076,7 +11232,9 @@ subset: value_slim synonym: "high distribution" EXACT [] is_a: PATO:0001475 ! increased position is_a: PATO:0001566 ! distributed -property_value: RO:0002604 PATO:0001672 +intersection_of: PATO:0001566 ! distributed +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001672 ! decreased distribution [Term] id: PATO:0001672 @@ -11086,7 +11244,9 @@ subset: value_slim synonym: "low distribution" EXACT [] is_a: PATO:0001476 ! decreased position is_a: PATO:0001566 ! distributed -property_value: RO:0002604 PATO:0001671 +intersection_of: PATO:0001566 ! distributed +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001671 ! increased distribution [Term] id: PATO:0001673 @@ -11114,7 +11274,9 @@ subset: value_slim synonym: "low efficiency" EXACT [] is_a: PATO:0001678 ! efficient is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001676 +intersection_of: PATO:0001678 ! efficient +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001676 ! increased efficiency [Term] id: PATO:0001676 @@ -11124,7 +11286,9 @@ subset: value_slim synonym: "high efficiency" EXACT [] is_a: PATO:0001678 ! efficient is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001675 +intersection_of: PATO:0001678 ! efficient +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001675 ! decreased efficiency [Term] id: PATO:0001677 @@ -11133,7 +11297,7 @@ def: "An efficiency quality inhering in a bearer by virtue of the bearer's lacki subset: value_slim is_a: PATO:0001029 ! efficiency disjoint_from: PATO:0001678 ! efficient -property_value: RO:0002604 PATO:0001678 +relationship: is_opposite_of PATO:0001678 ! efficient [Term] id: PATO:0001678 @@ -11141,7 +11305,7 @@ name: efficient def: "An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency." [PATOC:GVG] subset: value_slim is_a: PATO:0001029 ! efficiency -property_value: RO:0002604 PATO:0001677 +relationship: is_opposite_of PATO:0001677 ! inefficient [Term] id: PATO:0001679 @@ -11186,7 +11350,9 @@ subset: value_slim synonym: "high magnetism" EXACT [] is_a: PATO:0001685 ! magnetic is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001684 +intersection_of: PATO:0001685 ! magnetic +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001684 ! decreased magnetism [Term] id: PATO:0001684 @@ -11197,7 +11363,9 @@ subset: value_slim synonym: "low magnetism" EXACT [] is_a: PATO:0001685 ! magnetic is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001683 +intersection_of: PATO:0001685 ! magnetic +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001683 ! increased magnetism [Term] id: PATO:0001685 @@ -11207,7 +11375,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001682 ! magnetism disjoint_from: PATO:0001686 ! non-magnetic -property_value: RO:0002604 PATO:0001686 +relationship: is_opposite_of PATO:0001686 ! non-magnetic [Term] id: PATO:0001686 @@ -11216,7 +11384,7 @@ def: "A magnetic quality inhering in a bearer by virtue of the bearer's inabilit subset: disposition_slim subset: value_slim is_a: PATO:0001682 ! magnetism -property_value: RO:0002604 PATO:0001685 +relationship: is_opposite_of PATO:0001685 ! magnetic [Term] id: PATO:0001687 @@ -11234,7 +11402,9 @@ synonym: "elevated" RELATED [] synonym: "high elevation" EXACT [] is_a: PATO:0001475 ! increased position is_a: PATO:0001687 ! elevation -property_value: RO:0002604 PATO:0001689 +intersection_of: PATO:0001687 ! elevation +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001689 ! decreased elevation [Term] id: PATO:0001689 @@ -11244,7 +11414,9 @@ subset: value_slim synonym: "low elevation" EXACT [] is_a: PATO:0001476 ! decreased position is_a: PATO:0001687 ! elevation -property_value: RO:0002604 PATO:0001688 +intersection_of: PATO:0001687 ! elevation +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001688 ! increased elevation [Term] id: PATO:0001690 @@ -11255,7 +11427,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001579 ! contractility disjoint_from: PATO:0001691 ! non-contractile -property_value: RO:0002604 PATO:0001691 +relationship: is_opposite_of PATO:0001691 ! non-contractile [Term] id: PATO:0001691 @@ -11265,7 +11437,7 @@ comment: This refers to the disposition of the bearer. subset: disposition_slim subset: value_slim is_a: PATO:0001579 ! contractility -property_value: RO:0002604 PATO:0001690 +relationship: is_opposite_of PATO:0001690 ! contractile [Term] id: PATO:0001693 @@ -11276,7 +11448,9 @@ subset: value_slim synonym: "high viscosity" EXACT [] is_a: PATO:0000998 ! viscous is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001694 +intersection_of: PATO:0000998 ! viscous +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001694 ! decreased viscosity [Term] id: PATO:0001694 @@ -11287,7 +11461,9 @@ subset: value_slim synonym: "low viscosity" EXACT [] is_a: PATO:0000998 ! viscous is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001693 +intersection_of: PATO:0000998 ! viscous +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001693 ! increased viscosity [Term] id: PATO:0001695 @@ -11298,7 +11474,9 @@ subset: value_slim synonym: "high fecundity" EXACT [] is_a: PATO:0000273 ! fecundity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001696 +intersection_of: PATO:0000273 ! fecundity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001696 ! decreased fecundity [Term] id: PATO:0001696 @@ -11309,7 +11487,9 @@ subset: value_slim synonym: "low fecundity" EXACT [] is_a: PATO:0000273 ! fecundity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001695 +intersection_of: PATO:0000273 ! fecundity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001695 ! increased fecundity [Term] id: PATO:0001697 @@ -11321,7 +11501,9 @@ subset: value_slim synonym: "low photosensitivity" EXACT [] is_a: PATO:0000547 ! photosensitive is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001698 +intersection_of: PATO:0000547 ! photosensitive +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001698 ! increased photosensitivity [Term] id: PATO:0001698 @@ -11333,7 +11515,9 @@ subset: value_slim synonym: "high photosensitivity" EXACT [] is_a: PATO:0000547 ! photosensitive is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001697 +intersection_of: PATO:0000547 ! photosensitive +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001697 ! decreased photosensitivity [Term] id: PATO:0001699 @@ -11341,7 +11525,7 @@ name: regular sleep pattern def: "A sleep pattern which has regular start and/or end times." [PATOC:GVG] subset: value_slim is_a: PATO:0000062 ! sleep pattern -property_value: RO:0002604 PATO:0001700 +relationship: is_opposite_of PATO:0001700 ! irregular sleep pattern [Term] id: PATO:0001700 @@ -11349,7 +11533,7 @@ name: irregular sleep pattern def: "A sleep pattern which has irregular start and/or end times." [PATOC:GVG] subset: value_slim is_a: PATO:0000062 ! sleep pattern -property_value: RO:0002604 PATO:0001699 +relationship: is_opposite_of PATO:0001699 ! regular sleep pattern [Term] id: PATO:0001701 @@ -11357,7 +11541,7 @@ name: mature def: "A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] subset: value_slim is_a: PATO:0000261 ! maturity -property_value: RO:0002604 PATO:0001501 +relationship: is_opposite_of PATO:0001501 ! immature [Term] id: PATO:0001702 @@ -11399,7 +11583,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002265 ! behavioural activity disjoint_from: PATO:0001707 ! behavioural active -property_value: RO:0002604 PATO:0001707 +relationship: is_opposite_of PATO:0001707 ! behavioural active [Term] id: PATO:0001707 @@ -11407,7 +11591,7 @@ name: behavioural active def: "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity." [PATOC:GVG] subset: value_slim is_a: PATO:0002265 ! behavioural activity -property_value: RO:0002604 PATO:0001706 +relationship: is_opposite_of PATO:0001706 ! behavioural inactive [Term] id: PATO:0001708 @@ -11448,7 +11632,9 @@ def: "A perimeter which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0000573 ! increased length is_a: PATO:0001711 ! perimeter -property_value: RO:0002604 PATO:0001713 +intersection_of: PATO:0001711 ! perimeter +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001713 ! decreased perimeter [Term] id: PATO:0001713 @@ -11457,7 +11643,9 @@ def: "A perimeter which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0000574 ! decreased length is_a: PATO:0001711 ! perimeter -property_value: RO:0002604 PATO:0001712 +intersection_of: PATO:0001711 ! perimeter +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001712 ! increased perimeter [Term] id: PATO:0001714 @@ -11466,7 +11654,9 @@ def: "A diameter which is relatively large." [PATOC:GVG] subset: value_slim is_a: PATO:0000573 ! increased length is_a: PATO:0001334 ! diameter -property_value: RO:0002604 PATO:0001715 +intersection_of: PATO:0001334 ! diameter +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001715 ! decreased diameter [Term] id: PATO:0001715 @@ -11475,7 +11665,9 @@ def: "A diameter which is relatively small." [PATOC:GVG] subset: value_slim is_a: PATO:0000574 ! decreased length is_a: PATO:0001334 ! diameter -property_value: RO:0002604 PATO:0001714 +intersection_of: PATO:0001334 ! diameter +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001714 ! increased diameter [Term] id: PATO:0001716 @@ -11487,7 +11679,7 @@ synonym: "resilient" RELATED [] synonym: "strong" RELATED [] synonym: "tough" RELATED [] is_a: PATO:0001662 ! fragility -property_value: RO:0002604 PATO:0001362 +relationship: is_opposite_of PATO:0001362 ! fragile [Term] id: PATO:0001717 @@ -11537,7 +11729,9 @@ subset: value_slim synonym: "high female receptivity" EXACT [] is_a: PATO:0001720 ! female receptivity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001724 +intersection_of: PATO:0001720 ! female receptivity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001724 ! decreased female receptivity [Term] id: PATO:0001724 @@ -11548,7 +11742,9 @@ subset: value_slim synonym: "low female receptivity" EXACT [] is_a: PATO:0001720 ! female receptivity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001723 +intersection_of: PATO:0001720 ! female receptivity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001723 ! increased female receptivity [Term] id: PATO:0001725 @@ -11559,7 +11755,9 @@ subset: value_slim synonym: "high male receptivity" EXACT [] is_a: PATO:0001721 ! male receptivity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001726 +intersection_of: PATO:0001721 ! male receptivity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001726 ! decreased male receptivity [Term] id: PATO:0001726 @@ -11570,7 +11768,9 @@ subset: value_slim synonym: "low male receptivity" EXACT [] is_a: PATO:0001721 ! male receptivity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001725 +intersection_of: PATO:0001721 ! male receptivity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001725 ! increased male receptivity [Term] id: PATO:0001727 @@ -11705,7 +11905,9 @@ subset: value_slim synonym: "high radioactivity" EXACT [] is_a: PATO:0001741 ! radioactive is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001743 +intersection_of: PATO:0001741 ! radioactive +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001743 ! decreased radioactivity [Term] id: PATO:0001743 @@ -11715,7 +11917,9 @@ subset: value_slim synonym: "low radioactivity" EXACT [] is_a: PATO:0001741 ! radioactive is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001742 +intersection_of: PATO:0001741 ! radioactive +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001742 ! increased radioactivity [Term] id: PATO:0001744 @@ -11766,7 +11970,7 @@ subset: value_slim synonym: "hypoplastic growth" EXACT [] synonym: "pedomorphic growth" EXACT [] is_a: PATO:0001490 ! heterochronic growth -property_value: RO:0002604 PATO:0001752 +relationship: is_opposite_of PATO:0001752 ! peramorphic growth [Term] id: PATO:0001750 @@ -11789,7 +11993,7 @@ def: "A heterochronic growth quality inhering in an organism, structure, or grou subset: attribute_slim synonym: "hyperplastic growth" EXACT [] is_a: PATO:0001490 ! heterochronic growth -property_value: RO:0002604 PATO:0001749 +relationship: is_opposite_of PATO:0001749 ! paedomorphic growth [Term] id: PATO:0001753 @@ -11855,7 +12059,7 @@ name: female semi-fertile subset: disposition_slim subset: value_slim is_a: PATO:0001767 ! semi-fertile -property_value: RO:0002604 PATO:0001763 +relationship: is_opposite_of PATO:0001763 ! female semi-sterile [Term] id: PATO:0001761 @@ -11863,7 +12067,7 @@ name: male semi-fertile subset: disposition_slim subset: value_slim is_a: PATO:0001767 ! semi-fertile -property_value: RO:0002604 PATO:0001762 +relationship: is_opposite_of PATO:0001762 ! male semi-sterile [Term] id: PATO:0001762 @@ -11871,7 +12075,7 @@ name: male semi-sterile subset: disposition_slim subset: value_slim is_a: PATO:0000279 ! male fertility -property_value: RO:0002604 PATO:0001761 +relationship: is_opposite_of PATO:0001761 ! male semi-fertile [Term] id: PATO:0001763 @@ -11879,7 +12083,7 @@ name: female semi-sterile subset: disposition_slim subset: value_slim is_a: PATO:0000277 ! female fertility -property_value: RO:0002604 PATO:0001760 +relationship: is_opposite_of PATO:0001760 ! female semi-fertile [Term] id: PATO:0001764 @@ -11889,7 +12093,9 @@ subset: value_slim synonym: "high age" EXACT [] is_a: PATO:0000011 ! age is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001765 +intersection_of: PATO:0000011 ! age +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001765 ! decreased age [Term] id: PATO:0001765 @@ -11899,7 +12105,9 @@ subset: value_slim synonym: "low age" EXACT [] is_a: PATO:0000011 ! age is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001764 +intersection_of: PATO:0000011 ! age +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001764 ! increased age [Term] id: PATO:0001766 @@ -11983,7 +12191,9 @@ subset: value_slim synonym: "high flexibility" EXACT [] is_a: PATO:0001544 ! flexible is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001777 +intersection_of: PATO:0001544 ! flexible +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001777 ! decreased flexibility [Term] id: PATO:0001777 @@ -11994,7 +12204,9 @@ subset: value_slim synonym: "low flexibility" EXACT [] is_a: PATO:0001544 ! flexible is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001776 +intersection_of: PATO:0001544 ! flexible +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001776 ! increased flexibility [Term] id: PATO:0001778 @@ -12004,7 +12216,9 @@ subset: value_slim synonym: "high strength" EXACT [] is_a: PATO:0001230 ! strength is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001779 +intersection_of: PATO:0001230 ! strength +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001779 ! decreased strength [Term] id: PATO:0001779 @@ -12014,7 +12228,9 @@ subset: value_slim synonym: "weak" EXACT [] is_a: PATO:0001230 ! strength is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001778 +intersection_of: PATO:0001230 ! strength +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001778 ! increased strength [Term] id: PATO:0001780 @@ -12040,7 +12256,9 @@ subset: value_slim synonym: "high intensity" EXACT [] is_a: PATO:0000049 ! intensity is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0001783 +intersection_of: PATO:0000049 ! intensity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001783 ! decreased intensity [Term] id: PATO:0001783 @@ -12050,7 +12268,9 @@ subset: value_slim synonym: "low intensity" EXACT [] is_a: PATO:0000049 ! intensity is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0001782 +intersection_of: PATO:0000049 ! intensity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001782 ! increased intensity [Term] id: PATO:0001784 @@ -12104,7 +12324,9 @@ subset: value_slim synonym: "high density" EXACT [] is_a: PATO:0001164 ! dense is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001790 +intersection_of: PATO:0001164 ! dense +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001790 ! decreased mass density [Term] id: PATO:0001789 @@ -12123,7 +12345,9 @@ subset: value_slim synonym: "low density" EXACT [] is_a: PATO:0001164 ! dense is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001788 +intersection_of: PATO:0001164 ! dense +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001788 ! increased mass density [Term] id: PATO:0001791 @@ -12168,7 +12392,9 @@ subset: value_slim synonym: "high coiling" EXACT [] is_a: PATO:0000404 ! coiled is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001796 +intersection_of: PATO:0000404 ! coiled +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001796 ! decreased coiling [Term] id: PATO:0001796 @@ -12179,7 +12405,9 @@ subset: value_slim synonym: "low coiling" EXACT [] is_a: PATO:0000404 ! coiled is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001795 +intersection_of: PATO:0000404 ! coiled +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001795 ! increased coiling [Term] id: PATO:0001798 @@ -12216,6 +12444,8 @@ synonym: "dehydrated" EXACT [] synonym: "dry" RELATED [] is_a: PATO:0001800 ! water composition is_a: PATO:0002303 ! decreased object quality +intersection_of: PATO:0001800 ! water composition +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal [Term] id: PATO:0001802 @@ -12267,7 +12497,9 @@ subset: value_slim synonym: "low sensitivity to irradiation" EXACT [] is_a: PATO:0001806 ! sensitivity to irradiation is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001808 +intersection_of: PATO:0001806 ! sensitivity to irradiation +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001808 ! increased sensitivity to irradiation [Term] id: PATO:0001808 @@ -12278,7 +12510,9 @@ subset: value_slim synonym: "high sensitivity to irradiation" EXACT [] is_a: PATO:0001806 ! sensitivity to irradiation is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001807 +intersection_of: PATO:0001806 ! sensitivity to irradiation +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001807 ! decreased sensitivity to irradiation [Term] id: PATO:0001809 @@ -12347,7 +12581,7 @@ subset: value_slim synonym: "high fatigability" EXACT [] is_a: PATO:0001779 ! decreased strength is_a: PATO:0001815 ! fatigability -property_value: RO:0002604 PATO:0001817 +relationship: is_opposite_of PATO:0001817 ! decreased fatigability [Term] id: PATO:0001817 @@ -12358,7 +12592,7 @@ subset: value_slim synonym: "low fatigability" EXACT [] is_a: PATO:0001778 ! increased strength is_a: PATO:0001815 ! fatigability -property_value: RO:0002604 PATO:0001816 +relationship: is_opposite_of PATO:0001816 ! increased fatigability [Term] id: PATO:0001818 @@ -12368,7 +12602,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence -property_value: RO:0002604 PATO:0002026 +relationship: is_opposite_of PATO:0002026 ! non-progressive [Term] id: PATO:0001819 @@ -12387,7 +12621,7 @@ subset: mpath_slim subset: value_slim synonym: "unperforated" EXACT [] is_a: PATO:0002014 ! structure, cavities -property_value: RO:0002604 PATO:0002112 +relationship: is_opposite_of PATO:0002112 ! perforate [Term] id: PATO:0001822 @@ -12406,7 +12640,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0001822 ! wetness disjoint_from: PATO:0001824 ! dry -property_value: RO:0002604 PATO:0001824 +relationship: is_opposite_of PATO:0001824 ! dry [Term] id: PATO:0001824 @@ -12415,7 +12649,7 @@ def: "A wetness quality inhering in a bearer by virtue of the bearer's not being subset: mpath_slim subset: value_slim is_a: PATO:0001822 ! wetness -property_value: RO:0002604 PATO:0001823 +relationship: is_opposite_of PATO:0001823 ! wet [Term] id: PATO:0001825 @@ -12424,7 +12658,9 @@ def: "A wetness quality that is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0001823 ! wet is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001826 +intersection_of: PATO:0001823 ! wet +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001826 ! decreased wetness [Term] id: PATO:0001826 @@ -12434,7 +12670,9 @@ subset: value_slim synonym: "low wetness" EXACT [] is_a: PATO:0001823 ! wet is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001825 +intersection_of: PATO:0001823 ! wet +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001825 ! increased wetness [Term] id: PATO:0001827 @@ -12466,7 +12704,9 @@ subset: value_slim synonym: "low female fertility" EXACT [] is_a: PATO:0000888 ! female fertile is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001831 +intersection_of: PATO:0000888 ! female fertile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001831 ! increased female fertility [Term] id: PATO:0001831 @@ -12477,7 +12717,9 @@ subset: value_slim synonym: "high female fertility" EXACT [] is_a: PATO:0000888 ! female fertile is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001830 +intersection_of: PATO:0000888 ! female fertile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001830 ! decreased female fertility [Term] id: PATO:0001832 @@ -12488,7 +12730,9 @@ subset: value_slim synonym: "high male fertility" EXACT [] is_a: PATO:0000891 ! male fertile is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001833 +intersection_of: PATO:0000891 ! male fertile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001833 ! decreased male fertility [Term] id: PATO:0001833 @@ -12499,7 +12743,9 @@ subset: value_slim synonym: "low male fertility" EXACT [] is_a: PATO:0000891 ! male fertile is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001832 +intersection_of: PATO:0000891 ! male fertile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001832 ! increased male fertility [Term] id: PATO:0001834 @@ -12510,7 +12756,9 @@ subset: value_slim synonym: "low fertility" EXACT [] is_a: PATO:0000955 ! fertile is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001835 +intersection_of: PATO:0000955 ! fertile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001835 ! increased fertility [Term] id: PATO:0001835 @@ -12521,7 +12769,9 @@ subset: value_slim synonym: "high fertility" EXACT [] is_a: PATO:0000955 ! fertile is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001834 +intersection_of: PATO:0000955 ! fertile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001834 ! decreased fertility [Term] id: PATO:0001836 @@ -12539,7 +12789,9 @@ subset: value_slim synonym: "low flow" EXACT [] is_a: PATO:0002243 ! fluid flow rate is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001839 +intersection_of: PATO:0002243 ! fluid flow rate +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001839 ! increased fluid flow [Term] id: PATO:0001839 @@ -12549,7 +12801,9 @@ subset: value_slim synonym: "high flow" EXACT [] is_a: PATO:0002243 ! fluid flow rate is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001838 +intersection_of: PATO:0002243 ! fluid flow rate +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001838 ! decreased fluid flow [Term] id: PATO:0001841 @@ -12577,7 +12831,9 @@ subset: value_slim synonym: "low acidity" EXACT [] is_a: PATO:0001842 ! acidity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001844 +intersection_of: PATO:0001842 ! acidity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001844 ! increased acidity [Term] id: PATO:0001844 @@ -12587,7 +12843,9 @@ subset: value_slim synonym: "high acidity" EXACT [] is_a: PATO:0001842 ! acidity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001843 +intersection_of: PATO:0001842 ! acidity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001843 ! decreased acidity [Term] id: PATO:0001845 @@ -12700,7 +12958,7 @@ def: "A shape quality in a bearer by virtue of the bearer's curving inward." [Wo subset: cell_quality subset: value_slim is_a: PATO:0002005 ! concavity -property_value: RO:0002604 PATO:0001355 +relationship: is_opposite_of PATO:0001355 ! convex [Term] id: PATO:0001858 @@ -12718,7 +12976,9 @@ subset: value_slim synonym: "high coordination" EXACT [] is_a: PATO:0000769 ! coordinated is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001860 +intersection_of: PATO:0000769 ! coordinated +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001860 ! decreased coordination [Term] id: PATO:0001860 @@ -12729,7 +12989,9 @@ subset: value_slim synonym: "low coordination" EXACT [] is_a: PATO:0000769 ! coordinated is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001859 +intersection_of: PATO:0000769 ! coordinated +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001859 ! increased coordination [Term] id: PATO:0001861 @@ -12740,7 +13002,7 @@ subset: value_slim synonym: "fascicled" EXACT [] is_a: PATO:0002013 ! fasciculation disjoint_from: PATO:0001959 ! defasciculated -property_value: RO:0002604 PATO:0001959 +relationship: is_opposite_of PATO:0001959 ! defasciculated [Term] id: PATO:0001862 @@ -12759,7 +13021,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0001309 ! duration -property_value: RO:0002604 PATO:0000389 +relationship: is_opposite_of PATO:0000389 ! acute [Term] id: PATO:0001865 @@ -12956,7 +13218,7 @@ subset: attribute_slim subset: disposition_slim is_a: PATO:0001018 ! physical quality disjoint_from: PATO:0001886 ! hydrophilicity -property_value: RO:0002604 PATO:0001886 +relationship: is_opposite_of PATO:0001886 ! hydrophilicity [Term] id: PATO:0001885 @@ -12965,7 +13227,7 @@ def: "A quality inhering in a bearer by virtue of the bearer's lacking affinity subset: disposition_slim subset: value_slim is_a: PATO:0001884 ! hydrophobicity -property_value: RO:0002604 PATO:0001887 +relationship: is_opposite_of PATO:0001887 ! hydrophilic [Term] id: PATO:0001886 @@ -12974,7 +13236,7 @@ def: "A physical quality inhering in a bearer by virtue the bearer's disposition subset: attribute_slim subset: disposition_slim is_a: PATO:0001018 ! physical quality -property_value: RO:0002604 PATO:0001884 +relationship: is_opposite_of PATO:0001884 ! hydrophobicity [Term] id: PATO:0001887 @@ -12983,7 +13245,7 @@ def: "A quality inhering in a bearer by virtue of the bearer's disposition to ha subset: disposition_slim subset: value_slim is_a: PATO:0001886 ! hydrophilicity -property_value: RO:0002604 PATO:0001885 +relationship: is_opposite_of PATO:0001885 ! hydrophobic [Term] id: PATO:0001888 @@ -13034,7 +13296,9 @@ def: "An odor quality of having decreased odor." [PATOC:GVG] subset: value_slim is_a: PATO:0001331 ! odorous is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001893 +intersection_of: PATO:0001331 ! odorous +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001893 ! increased odor [Term] id: PATO:0001893 @@ -13043,7 +13307,9 @@ def: "An odor quality of having increased odor." [PATOC:GVG] subset: value_slim is_a: PATO:0001331 ! odorous is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001892 +intersection_of: PATO:0001331 ! odorous +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001892 ! decreased odor [Term] id: PATO:0001894 @@ -13065,7 +13331,7 @@ name: unlumenized def: "A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances." [PATOC:MAH] subset: value_slim is_a: PATO:0002014 ! structure, cavities -property_value: RO:0002604 PATO:0001897 +relationship: is_opposite_of PATO:0001897 ! lumenized [Term] id: PATO:0001897 @@ -13074,7 +13340,7 @@ def: "A structure quality inhering in a bearer by virtue of the bearer's having comment: See GO term: GO:0031974 membrane-enclosed lumen [DEF:"The enclosed volume within a sealed membrane or between two sealed membranes"]. subset: value_slim is_a: PATO:0002014 ! structure, cavities -property_value: RO:0002604 PATO:0001896 +relationship: is_opposite_of PATO:0001896 ! unlumenized [Term] id: PATO:0001898 @@ -13083,7 +13349,9 @@ def: "A circumference which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0001648 ! circumference is_a: PATO:0001712 ! increased perimeter -property_value: RO:0002604 PATO:0001899 +intersection_of: PATO:0001648 ! circumference +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001899 ! decreased circumference [Term] id: PATO:0001899 @@ -13092,7 +13360,9 @@ def: "A circumference which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0001648 ! circumference is_a: PATO:0001713 ! decreased perimeter -property_value: RO:0002604 PATO:0001898 +intersection_of: PATO:0001648 ! circumference +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001898 ! increased circumference [Term] id: PATO:0001900 @@ -13100,7 +13370,7 @@ name: front def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction -property_value: RO:0002604 PATO:0001901 +relationship: is_opposite_of PATO:0001901 ! back [Term] id: PATO:0001901 @@ -13108,7 +13378,7 @@ name: back def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction -property_value: RO:0002604 PATO:0001900 +relationship: is_opposite_of PATO:0001900 ! front [Term] id: PATO:0001902 @@ -13292,7 +13562,9 @@ subset: value_slim synonym: "high fluorescence" EXACT [] is_a: PATO:0001290 ! fluorescent is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001927 +intersection_of: PATO:0001290 ! fluorescent +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001927 ! decreased fluorescence [Term] id: PATO:0001927 @@ -13302,7 +13574,9 @@ subset: value_slim synonym: "low fluorescence" EXACT [] is_a: PATO:0001290 ! fluorescent is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001926 +intersection_of: PATO:0001290 ! fluorescent +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001926 ! increased fluorescence [Term] id: PATO:0001928 @@ -13327,7 +13601,7 @@ name: variant shape def: "A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape." [PATOC:GVG] subset: value_slim is_a: PATO:0001929 ! variability of shape -property_value: RO:0002604 PATO:0001931 +relationship: is_opposite_of PATO:0001931 ! invariant shape [Term] id: PATO:0001931 @@ -13335,7 +13609,7 @@ name: invariant shape def: "A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape." [PATOC:GVG] subset: value_slim is_a: PATO:0001929 ! variability of shape -property_value: RO:0002604 PATO:0001930 +relationship: is_opposite_of PATO:0001930 ! variant shape [Term] id: PATO:0001932 @@ -13530,9 +13804,9 @@ name: decreased variability of size def: "A variability of size which is relatively low." [PATOC:GVG] subset: value_slim synonym: "low variability of size" EXACT [] -is_a: PATO:0001956 ! variability of size -is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0001958 +intersection_of: PATO:0001956 ! variability of size +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001958 ! increased variability of size [Term] id: PATO:0001958 @@ -13540,9 +13814,9 @@ name: increased variability of size def: "A variability of size which is relatively high." [PATOC:GVG] subset: value_slim synonym: "high variability of size" EXACT [] -is_a: PATO:0001956 ! variability of size -is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0001957 +intersection_of: PATO:0001956 ! variability of size +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0001957 ! decreased variability of size [Term] id: PATO:0001959 @@ -13550,7 +13824,7 @@ name: defasciculated def: "A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated." [PATOC:mw] subset: value_slim is_a: PATO:0002013 ! fasciculation -property_value: RO:0002604 PATO:0001861 +relationship: is_opposite_of PATO:0001861 ! fasciculated [Term] id: PATO:0001960 @@ -13665,7 +13939,7 @@ name: unserrated def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex." [ISBN:0881923214] subset: value_slim is_a: PATO:0001976 ! serration -property_value: RO:0002604 PATO:0001206 +relationship: is_opposite_of PATO:0001206 ! serrated [Term] id: PATO:0001976 @@ -13814,7 +14088,6 @@ id: PATO:0001995 name: organismal quality def: "A quality that inheres in an entire organism or part of an organism." [PATOC:CJM] is_a: PATO:0001241 ! physical object quality -disjoint_from: PATO:0002003 ! population quality [Term] id: PATO:0001997 @@ -13830,7 +14103,9 @@ synonym: "reduced" RELATED [] synonym: "subnumerary" RELATED [] is_a: PATO:0000467 ! present is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0000470 +intersection_of: PATO:0000070 ! amount +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0000470 ! increased amount [Term] id: PATO:0001998 @@ -13871,7 +14146,9 @@ synonym: "has decreased number of" EXACT [] synonym: "has fewer physical parts of type" EXACT [] is_a: PATO:0001999 ! lacks parts or has fewer parts of type is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002002 +intersection_of: PATO:0001999 ! lacks parts or has fewer parts of type +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002002 ! has extra parts of type [Term] id: PATO:0002002 @@ -13887,7 +14164,9 @@ synonym: "having supernumerary physical parts" EXACT [] synonym: "increased number of" EXACT [] is_a: PATO:0002083 ! altered number of is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002001 +intersection_of: PATO:0002083 ! altered number of +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002001 ! has fewer parts of type [Term] id: PATO:0002003 @@ -13929,7 +14208,7 @@ subset: attribute_slim xref: Image:http\://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png is_a: PATO:0002266 ! 3-D shape relationship: has_cross_section PATO:0002006 ! 2-D shape -property_value: RO:0002604 PATO:0002008 +relationship: is_opposite_of PATO:0002008 ! concave 3-D shape [Term] id: PATO:0002008 @@ -13939,7 +14218,7 @@ subset: attribute_slim xref: Image:http\://en.wikipedia.org/wiki/Image\:Convex_polygon_illustration2.png is_a: PATO:0002266 ! 3-D shape relationship: has_part PATO:0001857 ! concave -property_value: RO:0002604 PATO:0002007 +relationship: is_opposite_of PATO:0002007 ! convex 3-D shape [Term] id: PATO:0002009 @@ -13997,14 +14276,14 @@ id: PATO:0002017 name: increased magnitude synonym: "high magnitude" EXACT [] is_a: PATO:0002016 ! magnitude -property_value: RO:0002604 PATO:0002018 +relationship: is_opposite_of PATO:0002018 ! decreased magnitude [Term] id: PATO:0002018 name: decreased magnitude synonym: "low magnitude" EXACT [] is_a: PATO:0002016 ! magnitude -property_value: RO:0002604 PATO:0002017 +relationship: is_opposite_of PATO:0002017 ! increased magnitude [Term] id: PATO:0002019 @@ -14067,7 +14346,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence -property_value: RO:0002604 PATO:0001818 +relationship: is_opposite_of PATO:0001818 ! progressive created_by: george gkoutos creation_date: 2008-12-18T12:49:19Z @@ -14091,7 +14370,9 @@ subset: value_slim synonym: "low osmolality" EXACT [] is_a: PATO:0002027 ! osmolality is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002029 +intersection_of: PATO:0002027 ! osmolality +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002029 ! increased osmolality created_by: george creation_date: 2009-01-27T10:55:33Z @@ -14104,7 +14385,9 @@ subset: value_slim synonym: "high osmolality" EXACT [] is_a: PATO:0002027 ! osmolality is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002028 +intersection_of: PATO:0002027 ! osmolality +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002028 ! decreased osmolality created_by: george creation_date: 2009-01-27T10:56:19Z @@ -14196,7 +14479,7 @@ def: "A structural quality inhering in a bearer whose structure which does not d subset: value_slim synonym: "not degenerate" EXACT [] is_a: PATO:0002037 ! degeneration -property_value: RO:0002604 PATO:0000639 +relationship: is_opposite_of PATO:0000639 ! degenerate created_by: george creation_date: 2009-02-03T11:14:54Z @@ -14206,7 +14489,7 @@ name: biconcave def: "A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces." [PATOC:GVG] subset: value_slim is_a: PATO:0001857 ! concave -property_value: RO:0002604 PATO:0002040 +relationship: is_opposite_of PATO:0002040 ! biconvex [Term] id: PATO:0002040 @@ -14215,7 +14498,7 @@ def: "A shape quality inhering in a bearer by virtue of the bearer's being conve subset: value_slim xref: Image:http\://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx is_a: PATO:0001355 ! convex -property_value: RO:0002604 PATO:0002039 +relationship: is_opposite_of PATO:0002039 ! biconcave [Term] id: PATO:0002041 @@ -14233,7 +14516,9 @@ subset: value_slim synonym: "low anterior-posterior diameter" EXACT [] is_a: PATO:0001715 ! decreased diameter is_a: PATO:0002041 ! anterior-posterior diameter -property_value: RO:0002604 PATO:0002043 +intersection_of: PATO:0002041 ! anterior-posterior diameter +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002043 ! increased anterior-posterior diameter [Term] id: PATO:0002043 @@ -14243,7 +14528,9 @@ subset: value_slim synonym: "high anterior-posterior diameter" EXACT [] is_a: PATO:0001714 ! increased diameter is_a: PATO:0002041 ! anterior-posterior diameter -property_value: RO:0002604 PATO:0002042 +intersection_of: PATO:0002041 ! anterior-posterior diameter +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002042 ! decreased anterior-posterior diameter [Term] id: PATO:0002044 @@ -14323,7 +14610,9 @@ def: "An occurrence which is relatively high." [PATOC:GVG] synonym: "increased incidence" EXACT [] is_a: PATO:0000057 ! occurrence is_a: PATO:0002304 ! increased process quality -property_value: RO:0002604 PATO:0002052 +intersection_of: PATO:0000057 ! occurrence +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002052 ! decreased occurrence created_by: George Gkoutos creation_date: 2009-03-26T11:10:11Z @@ -14334,7 +14623,9 @@ def: "An occurrence which is relatively low." [PATOC:GVG] synonym: "decreased incidence" EXACT [] is_a: PATO:0000057 ! occurrence is_a: PATO:0002302 ! decreased process quality -property_value: RO:0002604 PATO:0002051 +intersection_of: PATO:0000057 ! occurrence +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002051 ! increased occurrence created_by: George Gkoutos creation_date: 2009-03-26T11:12:35Z @@ -14366,7 +14657,9 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001362 ! fragile is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002056 +intersection_of: PATO:0001362 ! fragile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002056 ! decreased fragility created_by: George Gkoutos creation_date: 2009-03-26T04:01:37Z @@ -14378,7 +14671,9 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001362 ! fragile is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002055 +intersection_of: PATO:0001362 ! fragile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002055 ! increased fragility created_by: George Gkoutos creation_date: 2009-03-26T04:02:14Z @@ -14389,7 +14684,9 @@ def: "An area which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0000586 ! increased size is_a: PATO:0001323 ! area -property_value: RO:0002604 PATO:0002058 +intersection_of: PATO:0001323 ! area +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002058 ! decreased area created_by: George Gkoutos creation_date: 2009-03-30T04:11:43Z @@ -14400,7 +14697,9 @@ def: "An area which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0000587 ! decreased size is_a: PATO:0001323 ! area -property_value: RO:0002604 PATO:0002057 +intersection_of: PATO:0001323 ! area +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002057 ! increased area created_by: George Gkoutos creation_date: 2009-03-30T04:12:11Z @@ -14489,7 +14788,7 @@ def: "A spatial pattern inhering in a bearer by virtue of the bearer's exhibitin subset: mpath_slim subset: value_slim is_a: PATO:0002067 ! stratification -property_value: RO:0002604 PATO:0002069 +relationship: is_opposite_of PATO:0002069 ! unstratified created_by: George Gkoutos creation_date: 2009-07-01T02:31:53Z @@ -14500,7 +14799,7 @@ def: "A spatial pattern inhering in a bearer by virtue of the bearer's lacking a subset: mpath_slim subset: value_slim is_a: PATO:0002067 ! stratification -property_value: RO:0002604 PATO:0002068 +relationship: is_opposite_of PATO:0002068 ! stratified created_by: George Gkoutos creation_date: 2009-07-01T02:33:41Z @@ -14525,7 +14824,9 @@ subset: relational_slim subset: value_slim is_a: PATO:0002070 ! affinity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002072 +intersection_of: PATO:0002070 ! affinity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002072 ! decreased affinity created_by: George Gkoutos creation_date: 2009-09-18T01:29:42Z @@ -14538,7 +14839,9 @@ subset: relational_slim subset: value_slim is_a: PATO:0002070 ! affinity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002071 +intersection_of: PATO:0002070 ! affinity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002071 ! increased affinity created_by: George Gkoutos creation_date: 2009-09-18T01:30:11Z @@ -14563,7 +14866,9 @@ subset: relational_slim subset: value_slim is_a: PATO:0002073 ! avidity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002075 +intersection_of: PATO:0002073 ! avidity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002075 ! decreased avidity created_by: George Gkoutos creation_date: 2009-09-18T01:45:56Z @@ -14576,7 +14881,9 @@ subset: relational_slim subset: value_slim is_a: PATO:0002073 ! avidity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002074 +intersection_of: PATO:0002073 ! avidity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002074 ! increased avidity created_by: George Gkoutos creation_date: 2009-09-18T01:45:59Z @@ -14801,7 +15108,7 @@ def: "A cellular quality inhering in a bearer by virtue of its stable specializa subset: mpath_slim subset: value_slim is_a: PATO:0001397 ! cellular potency -property_value: RO:0002604 PATO:0002100 +relationship: is_opposite_of PATO:0002100 ! undifferentiated created_by: george creation_date: 2009-10-05T12:58:54Z @@ -14812,7 +15119,7 @@ def: "A cellular quality inhering in a bearer by virtue of having not yet acquir subset: mpath_slim subset: value_slim is_a: PATO:0001397 ! cellular potency -property_value: RO:0002604 PATO:0002099 +relationship: is_opposite_of PATO:0002099 ! differentiated created_by: george creation_date: 2009-10-05T12:59:21Z @@ -14941,7 +15248,7 @@ subset: value_slim synonym: "permeable" RELATED [] synonym: "pierced" RELATED [] is_a: PATO:0002014 ! structure, cavities -property_value: RO:0002604 PATO:0001821 +relationship: is_opposite_of PATO:0001821 ! imperforate created_by: george creation_date: 2009-10-05T03:37:05Z @@ -15220,7 +15527,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002138 ! edibility disjoint_from: PATO:0002140 ! inedible -property_value: RO:0002604 PATO:0002140 +relationship: is_opposite_of PATO:0002140 ! inedible created_by: george creation_date: 2009-10-26T01:21:34Z @@ -15232,7 +15539,7 @@ subset: disposition_slim subset: relational_slim subset: value_slim is_a: PATO:0002138 ! edibility -property_value: RO:0002604 PATO:0002139 +relationship: is_opposite_of PATO:0002139 ! edible created_by: george creation_date: 2009-10-26T01:22:27Z @@ -15269,7 +15576,9 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002136 ! radiopacity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002145 +intersection_of: PATO:0002136 ! radiopacity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002145 ! decreased radiopacity created_by: george creation_date: 2009-10-30T03:30:39Z @@ -15281,7 +15590,9 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002136 ! radiopacity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002144 +intersection_of: PATO:0002136 ! radiopacity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002144 ! increased radiopacity created_by: george creation_date: 2009-10-30T03:31:31Z @@ -15303,7 +15614,9 @@ subset: value_slim synonym: "attenuated" EXACT [] is_a: PATO:0002146 ! virulence is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002148 +intersection_of: PATO:0002146 ! virulence +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002148 ! increased virulence created_by: george creation_date: 2009-10-30T05:05:02Z @@ -15314,7 +15627,9 @@ def: "A virulence that is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0002146 ! virulence is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002147 +intersection_of: PATO:0002146 ! virulence +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002147 ! reduced virulence created_by: george creation_date: 2009-10-30T05:13:10Z @@ -15431,6 +15746,8 @@ def: "A concave quality inhering in a bearer by virtue of the bearer's forming o subset: value_slim is_a: PATO:0001594 ! arched is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0001594 ! arched +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal created_by: george creation_date: 2009-11-26T02:34:06Z @@ -15706,7 +16023,7 @@ def: "A molecular quality that inheres in a molecular entity when it possesses a subset: value_slim is_a: PATO:0002190 ! aromaticity disjoint_from: PATO:0002192 ! non-aromatic -property_value: RO:0002604 PATO:0002192 +relationship: is_opposite_of PATO:0002192 ! non-aromatic created_by: George Gkoutos creation_date: 2010-03-10T03:25:59Z @@ -15716,7 +16033,7 @@ name: non-aromatic def: "A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic." [PATOC:JH] subset: value_slim is_a: PATO:0002190 ! aromaticity -property_value: RO:0002604 PATO:0002191 +relationship: is_opposite_of PATO:0002191 ! aromatic created_by: George Gkoutos creation_date: 2010-03-10T03:26:41Z @@ -15748,7 +16065,7 @@ def: "A quality which inheres in a molecular entity by virtue of the molecular e subset: value_slim is_a: PATO:0002193 ! electric charge disjoint_from: PATO:0002196 ! negative charge -property_value: RO:0002604 PATO:0002196 +relationship: is_opposite_of PATO:0002196 ! negative charge created_by: George Gkoutos creation_date: 2010-03-10T03:30:06Z @@ -15758,7 +16075,7 @@ name: negative charge def: "A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge." [PATOC:JH] subset: value_slim is_a: PATO:0002193 ! electric charge -property_value: RO:0002604 PATO:0002195 +relationship: is_opposite_of PATO:0002195 ! positive charge created_by: George Gkoutos creation_date: 2010-03-10T03:30:39Z @@ -16004,7 +16321,7 @@ def: "A quality inhering in a protein or a molecule by virtue of the bearer's ha subset: value_slim is_a: PATO:0002262 ! phosphorylation disjoint_from: PATO:0002263 ! dephosphorylated -property_value: RO:0002604 PATO:0002263 +relationship: is_opposite_of PATO:0002263 ! dephosphorylated created_by: george creation_date: 2010-07-09T01:50:14Z @@ -16016,7 +16333,9 @@ subset: value_slim synonym: "hyperphosphorylated" EXACT [] is_a: PATO:0002220 ! phosphorylated is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002222 +intersection_of: PATO:0002220 ! phosphorylated +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002222 ! decreased phosphorylation created_by: george creation_date: 2010-07-09T01:51:52Z @@ -16028,7 +16347,9 @@ subset: value_slim synonym: "hypophosporylated" EXACT [] is_a: PATO:0002220 ! phosphorylated is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002221 +intersection_of: PATO:0002220 ! phosphorylated +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002221 ! increased phosphorylation created_by: george creation_date: 2010-07-09T01:54:22Z @@ -16255,7 +16576,9 @@ subset: value_slim synonym: "increased force amplitude" EXACT [] is_a: PATO:0001035 ! force is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002246 +intersection_of: PATO:0001035 ! force +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002246 ! decreased force created_by: george creation_date: 2010-08-04T11:12:20Z @@ -16267,7 +16590,9 @@ subset: value_slim synonym: "decreased force amplitude" EXACT [] is_a: PATO:0001035 ! force is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002245 +intersection_of: PATO:0001035 ! force +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002245 ! increased force created_by: george creation_date: 2010-08-04T11:13:13Z @@ -16290,7 +16615,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0002247 ! degree of pigmentation disjoint_from: PATO:0002249 ! unpigmented -property_value: RO:0002604 PATO:0002249 +relationship: is_opposite_of PATO:0002249 ! unpigmented created_by: george creation_date: 2010-08-09T04:16:49Z @@ -16302,7 +16627,7 @@ subset: mpath_slim subset: value_slim synonym: "depigmented" EXACT [] is_a: PATO:0002247 ! degree of pigmentation -property_value: RO:0002604 PATO:0002248 +relationship: is_opposite_of PATO:0002248 ! pigmented created_by: george creation_date: 2010-08-09T04:17:04Z @@ -16315,7 +16640,9 @@ subset: value_slim synonym: "hyperpigmented" EXACT [] is_a: PATO:0002248 ! pigmented is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002251 +intersection_of: PATO:0002248 ! pigmented +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002251 ! decreased pigmentation created_by: george creation_date: 2010-08-09T04:17:19Z @@ -16328,7 +16655,9 @@ subset: value_slim synonym: "hypopigmented" EXACT [] is_a: PATO:0002248 ! pigmented is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002250 +intersection_of: PATO:0002248 ! pigmented +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002250 ! increased pigmentation created_by: george creation_date: 2010-08-09T04:17:37Z @@ -16452,7 +16781,7 @@ name: dephosphorylated def: "A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group." [url:http\://en.wikipedia.org/wiki/Dephosphorylation] subset: value_slim is_a: PATO:0002262 ! phosphorylation -property_value: RO:0002604 PATO:0002220 +relationship: is_opposite_of PATO:0002220 ! phosphorylated created_by: george creation_date: 2010-09-16T09:04:21Z @@ -16520,7 +16849,7 @@ subset: relational_slim subset: value_slim synonym: "accumulated" EXACT [] is_a: PATO:0002269 ! accumulation -property_value: RO:0002604 PATO:0002271 +relationship: is_opposite_of PATO:0002271 ! decreased accumulation created_by: george creation_date: 2010-10-26T02:00:20Z @@ -16531,7 +16860,7 @@ def: "An accumulation which is relative low." [PATOC:GVG] subset: relational_slim subset: value_slim is_a: PATO:0002269 ! accumulation -property_value: RO:0002604 PATO:0002270 +relationship: is_opposite_of PATO:0002270 ! increased accumulation created_by: george creation_date: 2010-10-26T02:04:45Z @@ -16632,7 +16961,9 @@ def: "A mobility which is relative high." [PATO:GVG] subset: value_slim is_a: PATO:0000299 ! mobile is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002283 +intersection_of: PATO:0000299 ! mobile +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002283 ! decreased mobility created_by: george creation_date: 2011-03-09T09:16:03Z @@ -16643,7 +16974,9 @@ def: "A mobility which is relative low." [PATOC:GVG] subset: value_slim is_a: PATO:0000299 ! mobile is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002282 +intersection_of: PATO:0000299 ! mobile +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002282 ! increased mobility created_by: george creation_date: 2011-03-09T09:16:47Z @@ -16663,7 +16996,7 @@ name: increased branchiness def: "Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:CVS] subset: value_slim is_a: PATO:0000402 ! branched -property_value: RO:0002604 PATO:0002286 +relationship: is_opposite_of PATO:0002286 ! decreased branchiness created_by: george creation_date: 2011-03-10T09:07:57Z @@ -16673,7 +17006,7 @@ name: decreased branchiness def: "Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:CVS] subset: value_slim is_a: PATO:0000402 ! branched -property_value: RO:0002604 PATO:0002285 +relationship: is_opposite_of PATO:0002285 ! increased branchiness created_by: george creation_date: 2011-03-10T09:08:37Z @@ -16684,7 +17017,9 @@ def: "An elasticity which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0001171 ! elastic is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002288 +intersection_of: PATO:0001171 ! elastic +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002288 ! decreased elasticity created_by: George Gkoutos creation_date: 2011-03-30T11:50:21Z @@ -16695,7 +17030,9 @@ def: "An elasticity which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0001171 ! elastic is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002287 +intersection_of: PATO:0001171 ! elastic +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002287 ! increased elasticity created_by: George Gkoutos creation_date: 2011-03-30T11:50:39Z @@ -16779,7 +17116,9 @@ def: "A cellular motility which is lower relative to the normal or average." [PA subset: value_slim is_a: PATO:0001488 ! cellular motility is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002298 +intersection_of: PATO:0001488 ! cellular motility +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002298 ! increased cellular motility [Term] id: PATO:0002298 @@ -16788,7 +17127,9 @@ def: "A cellular motility which is higher relative to the normal or average." [P subset: value_slim is_a: PATO:0001488 ! cellular motility is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002297 +intersection_of: PATO:0001488 ! cellular motility +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002297 ! decreased cellular motility [Term] id: PATO:0002299 @@ -16807,8 +17148,9 @@ id: PATO:0002300 name: increased quality def: "A quality that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0000069 ! deviation(from_normal) -relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal -property_value: RO:0002604 PATO:0002301 +intersection_of: PATO:0000001 ! quality +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002301 ! decreased quality created_by: George Gkoutos creation_date: 2011-06-16T06:39:43Z @@ -16817,8 +17159,9 @@ id: PATO:0002301 name: decreased quality def: "A quality that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0000069 ! deviation(from_normal) -relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal -property_value: RO:0002604 PATO:0002300 +intersection_of: PATO:0000001 ! quality +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002300 ! increased quality created_by: George Gkoutos creation_date: 2011-06-16T06:40:15Z @@ -16828,7 +17171,9 @@ name: decreased process quality def: "A quality of a process that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0001236 ! process quality is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0002304 +intersection_of: PATO:0001236 ! process quality +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002304 ! increased process quality created_by: George Gkoutos creation_date: 2011-06-16T06:50:59Z @@ -16838,7 +17183,9 @@ name: decreased object quality def: "A quality of an object that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0002305 +intersection_of: PATO:0001241 ! physical object quality +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002305 ! increased object quality created_by: George Gkoutos creation_date: 2011-06-16T06:51:54Z @@ -16848,7 +17195,9 @@ name: increased process quality def: "A quality of a process that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0001236 ! process quality is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0002302 +intersection_of: PATO:0001236 ! process quality +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002302 ! decreased process quality created_by: George Gkoutos creation_date: 2011-06-16T06:53:08Z @@ -16858,7 +17207,9 @@ name: increased object quality def: "A quality of an object that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0002303 +intersection_of: PATO:0001241 ! physical object quality +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002303 ! decreased object quality created_by: George Gkoutos creation_date: 2011-06-16T06:54:01Z @@ -17007,7 +17358,7 @@ creation_date: 2011-10-12T12:49:06Z id: PATO:0002321 name: hypoelliptic is_a: PATO:0002318 ! superelliptic -property_value: RO:0002604 PATO:0002322 +relationship: is_opposite_of PATO:0002322 ! hyperelliptic created_by: George Gkoutos creation_date: 2011-10-12T12:50:59Z @@ -17015,7 +17366,7 @@ creation_date: 2011-10-12T12:50:59Z id: PATO:0002322 name: hyperelliptic is_a: PATO:0002318 ! superelliptic -property_value: RO:0002604 PATO:0002321 +relationship: is_opposite_of PATO:0002321 ! hypoelliptic created_by: George Gkoutos creation_date: 2011-10-12T12:51:19Z @@ -17067,7 +17418,9 @@ subset: relational_slim subset: value_slim is_a: PATO:0001475 ! increased position is_a: PATO:0002326 ! angle -property_value: RO:0002604 PATO:0002328 +intersection_of: PATO:0002326 ! angle +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002328 ! decreased angle to created_by: George Gkoutos creation_date: 2011-11-23T12:06:38Z @@ -17079,7 +17432,9 @@ subset: relational_slim subset: value_slim is_a: PATO:0001476 ! decreased position is_a: PATO:0002326 ! angle -property_value: RO:0002604 PATO:0002327 +intersection_of: PATO:0002326 ! angle +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002327 ! increased angle to created_by: George Gkoutos creation_date: 2011-11-23T12:06:54Z @@ -17108,7 +17463,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer exhibiting subset: value_slim synonym: "resinous" RELATED [] is_a: PATO:0001431 ! adhesivity -property_value: RO:0002604 PATO:0002332 +relationship: is_opposite_of PATO:0002332 ! non-adhesive created_by: gkoutos creation_date: 2012-01-31T12:28:16Z @@ -17119,7 +17474,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer not exhibi subset: value_slim synonym: "non-resinous" RELATED [] is_a: PATO:0001431 ! adhesivity -property_value: RO:0002604 PATO:0002331 +relationship: is_opposite_of PATO:0002331 ! adhesive created_by: gkoutos creation_date: 2012-01-31T12:28:57Z @@ -17130,7 +17485,9 @@ def: "A adhesivity which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0002305 ! increased object quality is_a: PATO:0002331 ! adhesive -property_value: RO:0002604 PATO:0002334 +intersection_of: PATO:0002331 ! adhesive +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002334 ! decreased adhesivity created_by: gkoutos creation_date: 2012-01-31T12:32:43Z @@ -17140,7 +17497,9 @@ name: decreased adhesivity def: "A adhesivity which is relatively low." [PATOC:GVG] is_a: PATO:0002303 ! decreased object quality is_a: PATO:0002331 ! adhesive -property_value: RO:0002604 PATO:0002333 +intersection_of: PATO:0002331 ! adhesive +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002333 ! increased adhesivity created_by: gkoutos creation_date: 2012-01-31T12:42:22Z @@ -17321,7 +17680,7 @@ name: active def: "A quality of an physical object that is currently realizing one of its functions." [PATOC:RH] subset: attribute_slim is_a: PATO:0002353 ! activation quality -property_value: RO:0002604 PATO:0002355 +relationship: is_opposite_of PATO:0002355 ! inactive created_by: gkoutos creation_date: 2012-01-31T04:52:04Z @@ -17331,7 +17690,7 @@ name: inactive def: "A quality of a physical object that is currently realizing none of its functions." [PATOC:RH] subset: attribute_slim is_a: PATO:0002353 ! activation quality -property_value: RO:0002604 PATO:0002354 +relationship: is_opposite_of PATO:0002354 ! active created_by: gkoutos creation_date: 2012-01-31T04:52:14Z @@ -17392,7 +17751,9 @@ subset: relational_slim subset: value_slim is_a: PATO:0002305 ! increased object quality is_a: PATO:0002360 ! tendency -property_value: RO:0002604 PATO:0002362 +intersection_of: PATO:0002360 ! tendency +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002362 ! decreased tendency created_by: gkoutos creation_date: 2012-03-16T06:31:57Z @@ -17405,7 +17766,9 @@ subset: relational_slim subset: value_slim is_a: PATO:0002303 ! decreased object quality is_a: PATO:0002360 ! tendency -property_value: RO:0002604 PATO:0002361 +intersection_of: PATO:0002360 ! tendency +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002361 ! increased tendency created_by: gkoutos creation_date: 2012-03-16T06:32:57Z @@ -17424,7 +17787,7 @@ name: shortened def: "A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width." [PATOC:GVG] subset: value_slim is_a: PATO:0000052 ! shape -property_value: RO:0002604 PATO:0001154 +relationship: is_opposite_of PATO:0001154 ! elongated created_by: gkoutos creation_date: 2012-04-18T06:31:29Z @@ -17534,7 +17897,7 @@ def: "A structure quality inhering in a bearer by virtue of the bearer's being f subset: value_slim synonym: "air-filled" EXACT [] is_a: PATO:0002014 ! structure, cavities -property_value: RO:0002604 PATO:0002377 +relationship: is_opposite_of PATO:0002377 ! uninflated created_by: gkoutos creation_date: 2012-07-05T02:55:10Z @@ -17544,7 +17907,7 @@ name: uninflated def: "A structure quality inhering in a bearer by virtue of the bearer's being not filed with air." [PATOC:CVS] subset: value_slim is_a: PATO:0002014 ! structure, cavities -property_value: RO:0002604 PATO:0002376 +relationship: is_opposite_of PATO:0002376 ! inflated created_by: gkoutos creation_date: 2012-07-05T02:56:07Z @@ -17592,7 +17955,9 @@ def: "A waxiness which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0002305 ! increased object quality is_a: PATO:0002381 ! waxiness -property_value: RO:0002604 PATO:0002383 +intersection_of: PATO:0002381 ! waxiness +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002383 ! decreased waxiness created_by: gkoutos creation_date: 2012-07-05T03:18:03Z @@ -17602,7 +17967,9 @@ name: decreased waxiness def: "A waxiness which is relatively low." [] is_a: PATO:0002303 ! decreased object quality is_a: PATO:0002381 ! waxiness -property_value: RO:0002604 PATO:0002382 +intersection_of: PATO:0002381 ! waxiness +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002382 ! increased waxiness created_by: gkoutos creation_date: 2012-07-05T03:18:14Z @@ -17701,7 +18068,9 @@ subset: relational_slim subset: value_slim is_a: PATO:0000515 ! tolerant to is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002394 +intersection_of: PATO:0000515 ! tolerant to +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002394 ! decreased tolerance to created_by: gkoutos creation_date: 2012-11-15T05:32:07Z @@ -17713,7 +18082,9 @@ subset: relational_slim subset: value_slim is_a: PATO:0000515 ! tolerant to is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002393 +intersection_of: PATO:0000515 ! tolerant to +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002393 ! increased tolerance to created_by: gkoutos creation_date: 2012-11-15T05:33:05Z @@ -18169,7 +18540,7 @@ name: ornamented def: "A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures." [PATOC:AD] subset: value_slim is_a: PATO:0002440 ! ornamentation -property_value: RO:0002604 PATO:0002442 +relationship: is_opposite_of PATO:0002442 ! unornamented created_by: gkoutos creation_date: 2013-01-29T10:59:42Z @@ -18179,7 +18550,7 @@ name: unornamented def: "A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures." [PATOC:AD] subset: value_slim is_a: PATO:0002440 ! ornamentation -property_value: RO:0002604 PATO:0002441 +relationship: is_opposite_of PATO:0002441 ! ornamented created_by: gkoutos creation_date: 2013-01-29T11:00:20Z @@ -18274,7 +18645,7 @@ name: decondensed def: "A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed." [PATOC:JL] subset: value_slim is_a: PATO:0000141 ! structure -property_value: RO:0002604 PATO:0001485 +relationship: is_opposite_of PATO:0001485 ! condensed created_by: gkoutos creation_date: 2013-04-08T08:43:31Z @@ -18450,7 +18821,9 @@ def: "A physical quality inhering in a bearer by virtue of the bearer's increase subset: value_slim is_a: PATO:0002242 ! velocity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002472 +intersection_of: PATO:0002242 ! velocity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002472 ! decreased velocity created_by: gkoutos creation_date: 2013-09-15T12:03:45Z @@ -18461,7 +18834,9 @@ def: "A physical quality inhering in a bearer by virtue of the bearer's decrease subset: value_slim is_a: PATO:0002242 ! velocity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002471 +intersection_of: PATO:0002242 ! velocity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002471 ! increased velocity created_by: gkoutos creation_date: 2013-09-15T12:05:06Z @@ -18646,7 +19021,7 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "anterodorsally directed" EXACT [] is_a: PATO:0000133 ! orientation -property_value: RO:0002604 PATO:0002526 +relationship: is_opposite_of PATO:0002526 ! anterodistal orientation created_by: gkoutos creation_date: 2013-10-10T05:12:15Z @@ -18677,7 +19052,7 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "distally directed" EXACT [] is_a: PATO:0000133 ! orientation -property_value: RO:0002604 PATO:0002495 +relationship: is_opposite_of PATO:0002495 ! dorsal orientation created_by: gkoutos creation_date: 2013-10-10T05:14:37Z @@ -18688,7 +19063,7 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "dorsally directed" EXACT [] is_a: PATO:0000133 ! orientation -property_value: RO:0002604 PATO:0002494 +relationship: is_opposite_of PATO:0002494 ! distal orientation created_by: gkoutos creation_date: 2013-10-10T05:15:24Z @@ -18779,7 +19154,7 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "posterodorsally directed" EXACT [] is_a: PATO:0000133 ! orientation -property_value: RO:0002604 PATO:0002527 +relationship: is_opposite_of PATO:0002527 ! posterodistal orientation created_by: gkoutos creation_date: 2013-10-10T05:19:36Z @@ -18987,7 +19362,7 @@ name: anterodistal orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally." [PATOC:EJS] synonym: "antero-distal orientation" EXACT [] is_a: PATO:0000133 ! orientation -property_value: RO:0002604 PATO:0002491 +relationship: is_opposite_of PATO:0002491 ! anterodorsal orientation created_by: segerdel creation_date: 2014-03-11T11:28:39Z @@ -18997,7 +19372,7 @@ name: posterodistal orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally." [PATOC:EJS] synonym: "postero-distal orientation" EXACT [] is_a: PATO:0000133 ! orientation -property_value: RO:0002604 PATO:0002504 +relationship: is_opposite_of PATO:0002504 ! posterodorsal orientation created_by: segerdel creation_date: 2014-03-11T11:29:22Z @@ -19285,7 +19660,7 @@ name: complete structure def: "A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts." [PATOC:WD] subset: value_slim is_a: PATO:0000141 ! structure -property_value: RO:0002604 PATO:0005013 +relationship: is_opposite_of PATO:0005013 ! incomplete structure created_by: wasila.dahdul creation_date: 2014-09-25T15:11:47Z @@ -19295,7 +19670,7 @@ name: incomplete structure def: "A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities." [PATOC:WD] subset: value_slim is_a: PATO:0000141 ! structure -property_value: RO:0002604 PATO:0005012 +relationship: is_opposite_of PATO:0005012 ! complete structure created_by: wasila.dahdul creation_date: 2014-09-25T15:12:35Z @@ -19430,8 +19805,9 @@ creation_date: 2019-07-18T18:24:15Z id: PATO:0010003 name: increased propagation velocity def: "A propagation velocity that is higher than normal." [orcid:0000-0002-7073-9172] -is_a: PATO:0002304 ! increased process quality is_a: PATO:0010002 ! propagation velocity +intersection_of: PATO:0010002 ! propagation velocity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal created_by: dos creation_date: 2019-07-18T18:24:25Z @@ -19439,8 +19815,8 @@ creation_date: 2019-07-18T18:24:25Z id: PATO:0010004 name: decreased propagation velocity def: "A propagation velocity that is lower than normal." [orcid:0000-0002-7073-9172] -is_a: PATO:0002302 ! decreased process quality -is_a: PATO:0010002 ! propagation velocity +intersection_of: PATO:0010002 ! propagation velocity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal created_by: dos creation_date: 2019-07-18T18:24:36Z @@ -19461,6 +19837,8 @@ subset: absent_slim subset: value_slim is_a: PATO:0000462 ! absent is_a: PATO:0000639 ! degenerate +intersection_of: PATO:0000462 ! absent +intersection_of: PATO:0000639 ! degenerate created_by: cjm [Term] @@ -19476,9 +19854,10 @@ id: PATO:0015003 name: decreased efficacy def: "A decrease in the ability of a process to produce its output." [PATOC:PortlandMeetingFeb2015] subset: value_slim -is_a: PATO:0002302 ! decreased process quality is_a: PATO:0015002 ! process efficacy -property_value: RO:0002604 PATO:0015004 +intersection_of: PATO:0015002 ! process efficacy +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015004 ! increased efficacy created_by: cjm [Term] @@ -19486,9 +19865,10 @@ id: PATO:0015004 name: increased efficacy def: "A increase in the ability of a process to produce its output." [PATOC:PortlandMeetingFeb2015] subset: value_slim -is_a: PATO:0002304 ! increased process quality is_a: PATO:0015002 ! process efficacy -property_value: RO:0002604 PATO:0015003 +intersection_of: PATO:0015002 ! process efficacy +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015003 ! decreased efficacy created_by: cjm [Term] @@ -19538,18 +19918,18 @@ name: increased humidity def: "An increase in humidity." [https://github.com/pato-ontology/pato/issues/90] subset: value_slim synonym: "humid" RELATED [] -is_a: PATO:0002305 ! increased object quality -is_a: PATO:0015009 ! humidity -property_value: RO:0002604 PATO:0015011 +intersection_of: PATO:0015009 ! humidity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015011 ! decreased humidity [Term] id: PATO:0015011 name: decreased humidity def: "An decrease in humidity." [https://github.com/pato-ontology/pato/issues/90] subset: value_slim -is_a: PATO:0002303 ! decreased object quality -is_a: PATO:0015009 ! humidity -property_value: RO:0002604 PATO:0015010 +intersection_of: PATO:0015009 ! humidity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015010 ! increased humidity [Term] id: PATO:0015012 @@ -19571,18 +19951,18 @@ name: increased degree of illumination def: "An increase in illumination." [https://github.com/pato-ontology/pato/issues/89] subset: value_slim synonym: "illuminated" RELATED [] -is_a: PATO:0002305 ! increased object quality -is_a: PATO:0015013 ! degree of illumination -property_value: RO:0002604 PATO:0015015 +intersection_of: PATO:0015013 ! degree of illumination +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015015 ! decreased degree of illumination [Term] id: PATO:0015015 name: decreased degree of illumination def: "An decrease in illumination." [https://github.com/pato-ontology/pato/issues/89] subset: value_slim -is_a: PATO:0002303 ! decreased object quality -is_a: PATO:0015013 ! degree of illumination -property_value: RO:0002604 PATO:0015014 +intersection_of: PATO:0015013 ! degree of illumination +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015014 ! increased degree of illumination [Term] id: PATO:0015016 @@ -19632,9 +20012,9 @@ name: increased combustibility def: "An increase in combustibility." [] subset: value_slim synonym: "combustible" EXACT [] -is_a: PATO:0002305 ! increased object quality -is_a: PATO:0015021 ! combustibility -property_value: RO:0002604 PATO:0015023 +intersection_of: PATO:0015021 ! combustibility +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015023 ! decreased combustibility [Term] id: PATO:0015023 @@ -19642,26 +20022,26 @@ name: decreased combustibility def: "An decrease in combustibility." [] subset: value_slim synonym: "noncombustible" RELATED [] -is_a: PATO:0002303 ! decreased object quality -is_a: PATO:0015021 ! combustibility -property_value: RO:0002604 PATO:0015022 +intersection_of: PATO:0015021 ! combustibility +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015022 ! increased combustibility [Term] id: PATO:0015024 name: increased porosity def: "An increase in porosity." [https://github.com/pato-ontology/pato/issues/110] subset: value_slim -is_a: PATO:0000973 ! porosity -is_a: PATO:0002305 ! increased object quality +intersection_of: PATO:0000973 ! porosity +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal [Term] id: PATO:0015025 name: decreased porosity def: "An decrease in porosity." [https://github.com/pato-ontology/pato/issues/110] subset: value_slim -is_a: PATO:0000973 ! porosity -is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0015024 +intersection_of: PATO:0000973 ! porosity +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015024 ! increased porosity [Term] id: PATO:0015026 @@ -19677,8 +20057,8 @@ name: increased stability def: "An increase in stability." [https://github.com/pato-ontology/pato/issues/113] subset: disposition_slim subset: value_slim -is_a: PATO:0002305 ! increased object quality -is_a: PATO:0015026 ! stability +intersection_of: PATO:0015026 ! stability +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal [Term] id: PATO:0015028 @@ -19686,9 +20066,9 @@ name: decreased stability def: "A decrease in stability." [https://github.com/pato-ontology/pato/issues/113] subset: disposition_slim subset: value_slim -is_a: PATO:0002303 ! decreased object quality -is_a: PATO:0015026 ! stability -property_value: RO:0002604 PATO:0015027 +intersection_of: PATO:0015026 ! stability +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0015027 ! increased stability [Term] id: PATO:0015029 @@ -19746,7 +20126,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer not being synonym: "undrinkable" EXACT [] is_a: PATO:0025000 ! potability disjoint_from: PATO:0025002 ! potable -property_value: RO:0002604 PATO:0025002 +relationship: is_opposite_of PATO:0025002 ! potable created_by: pbuttigieg creation_date: 2015-09-01T16:18:57Z @@ -19756,7 +20136,7 @@ name: potable def: "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration." [Wikipedia:https\://en.wikipedia.org/wiki/Drinking_water] synonym: "drinkable" EXACT [] is_a: PATO:0025000 ! potability -property_value: RO:0002604 PATO:0025001 +relationship: is_opposite_of PATO:0025001 ! non-potable created_by: pbuttigieg creation_date: 2015-09-01T16:19:02Z @@ -20006,13 +20386,16 @@ subset: mpath_slim subset: value_slim is_a: PATO:0000161 ! rate is_a: PATO:0045073 ! normal process quality +intersection_of: PATO:0000161 ! rate +intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045001 name: normal object quality def: "A quality of an object that has a value that is normal or average." [] is_a: PATO:0001241 ! physical object quality -relationship: has_relative_magnitude PATO:0000461 ! normal +intersection_of: PATO:0001241 ! physical object quality +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-21T14:11:01Z @@ -20023,6 +20406,8 @@ def: "An acidity which is relatively normal." [] subset: value_slim is_a: PATO:0001842 ! acidity is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001842 ! acidity +intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045003 @@ -20031,6 +20416,8 @@ def: "A adhesivity which is relatively normal or average." [] subset: value_slim is_a: PATO:0002331 ! adhesive is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002331 ! adhesive +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20041,6 +20428,8 @@ def: "An affinity which is relatively normal or average." [] subset: value_slim is_a: PATO:0002070 ! affinity is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002070 ! affinity +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20051,6 +20440,8 @@ def: "An age which is relatively normal or average." [] subset: value_slim is_a: PATO:0000011 ! age is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000011 ! age +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20060,8 +20451,9 @@ name: normal avidity def: "An avidity which is relatively normal or average." [] subset: disposition_slim subset: value_slim -is_a: PATO:0002073 ! avidity is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002073 ! avidity +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20072,6 +20464,8 @@ def: "A behavioural quality of a process inhering in a bearer by virtue of the b subset: value_slim is_a: PATO:0001707 ! behavioural active is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001707 ! behavioural active +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20082,6 +20476,8 @@ def: "A cellular motility which is normal or average." [] subset: value_slim is_a: PATO:0001488 ! cellular motility is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001488 ! cellular motility +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20093,6 +20489,8 @@ subset: cell_quality subset: value_slim is_a: PATO:0000404 ! coiled is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000404 ! coiled +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20104,6 +20502,8 @@ subset: relational_slim subset: value_slim is_a: PATO:0001159 ! concentrated is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001159 ! concentrated +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20115,6 +20515,8 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001690 ! contractile is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001690 ! contractile +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20126,6 +20528,8 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000769 ! coordinated is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000769 ! coordinated +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20136,6 +20540,8 @@ def: "A curvature which is relatively normal or average." [] subset: value_slim is_a: PATO:0000406 ! curved is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000406 ! curved +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20147,6 +20553,8 @@ subset: relational_slim subset: value_slim is_a: PATO:0000040 ! distance is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000040 ! distance +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20157,6 +20565,8 @@ def: "An efficiency which is relatively normal or average." [] subset: value_slim is_a: PATO:0001678 ! efficient is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001678 ! efficient +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20167,6 +20577,8 @@ def: "An elasticity which is relatively normal or average." [] subset: value_slim is_a: PATO:0001171 ! elastic is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001171 ! elastic +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20178,6 +20590,8 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000273 ! fecundity is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000273 ! fecundity +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20189,6 +20603,8 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000888 ! female fertile is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000888 ! female fertile +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20200,6 +20616,8 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001720 ! female receptivity is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001720 ! female receptivity +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20211,6 +20629,8 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000955 ! fertile is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000955 ! fertile +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20222,6 +20642,8 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001544 ! flexible is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001544 ! flexible +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20232,6 +20654,8 @@ def: "A fluid flow which is relatively normal or average." [] subset: value_slim is_a: PATO:0002243 ! fluid flow rate is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002243 ! fluid flow rate +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20242,6 +20666,8 @@ def: "A fluorescence which is relatively normal or average." [] subset: value_slim is_a: PATO:0001290 ! fluorescent is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001290 ! fluorescent +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20252,6 +20678,8 @@ def: "A force which is relatively normal or average." [] subset: value_slim is_a: PATO:0001035 ! force is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001035 ! force +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20263,6 +20691,8 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001362 ! fragile is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001362 ! fragile +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20272,6 +20702,8 @@ name: normal life span def: "A life span which is relatively normal or average." [] is_a: PATO:0000050 ! life span is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000050 ! life span +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20283,6 +20715,8 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001685 ! magnetic is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001685 ! magnetic +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20294,6 +20728,8 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000891 ! male fertile is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000891 ! male fertile +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20305,6 +20741,8 @@ subset: relational_slim subset: value_slim is_a: PATO:0001721 ! male receptivity is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001721 ! male receptivity +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20315,6 +20753,8 @@ def: "A mass which is relatively normal or average." [] subset: value_slim is_a: PATO:0000125 ! mass is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000125 ! mass +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20325,6 +20765,8 @@ def: "A density which is relatively normal or average." [] subset: value_slim is_a: PATO:0001164 ! dense is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001164 ! dense +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20335,6 +20777,8 @@ def: "A mobility which is relatively normal or average." [] subset: value_slim is_a: PATO:0000299 ! mobile is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000299 ! mobile +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20345,6 +20789,8 @@ def: "An odor quality of having relatively normal or average odor." [] subset: value_slim is_a: PATO:0001331 ! odorous is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001331 ! odorous +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20356,6 +20802,8 @@ subset: relational_slim subset: value_slim is_a: PATO:0002027 ! osmolality is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002027 ! osmolality +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20367,6 +20815,8 @@ subset: relational_slim subset: value_slim is_a: PATO:0001655 ! osmolarity is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001655 ! osmolarity +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20378,6 +20828,8 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000982 ! permeable is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000982 ! permeable +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20388,6 +20840,8 @@ def: "A quality inhering in a bearer by virtue of the bearer's being phosphoryla subset: value_slim is_a: PATO:0002220 ! phosphorylated is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002220 ! phosphorylated +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20400,6 +20854,8 @@ subset: relational_slim subset: value_slim is_a: PATO:0000547 ! photosensitive is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000547 ! photosensitive +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20411,6 +20867,8 @@ subset: mpath_slim subset: value_slim is_a: PATO:0002248 ! pigmented is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002248 ! pigmented +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20421,6 +20879,8 @@ def: "A position which is relatively normal or average" [] subset: value_slim is_a: PATO:0000140 ! position is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000140 ! position +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20432,6 +20892,8 @@ subset: relational_slim subset: value_slim is_a: PATO:0002326 ! angle is_a: PATO:0045040 ! normal position +intersection_of: PATO:0002326 ! angle +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20442,6 +20904,8 @@ def: "A distribution which is relatively normal or average" [] subset: value_slim is_a: PATO:0001566 ! distributed is_a: PATO:0045040 ! normal position +intersection_of: PATO:0001566 ! distributed +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20452,6 +20916,8 @@ def: "An elevation which is relatively normal or average" [] subset: value_slim is_a: PATO:0001687 ! elevation is_a: PATO:0045040 ! normal position +intersection_of: PATO:0001687 ! elevation +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20462,6 +20928,8 @@ def: "A pressure which is relatively normal or average" [] subset: value_slim is_a: PATO:0001025 ! pressure is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001025 ! pressure +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20472,6 +20940,8 @@ def: "A radioactivity which is relatively normal or average" [] subset: value_slim is_a: PATO:0001741 ! radioactive is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001741 ! radioactive +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20483,6 +20953,8 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002136 ! radiopacity is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002136 ! radiopacity +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20495,6 +20967,8 @@ subset: relational_slim subset: value_slim is_a: PATO:0001178 ! resistant to is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001178 ! resistant to +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20506,6 +20980,8 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001806 ! sensitivity to irradiation is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001806 ! sensitivity to irradiation +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20518,6 +20994,8 @@ subset: relational_slim subset: value_slim is_a: PATO:0000516 ! sensitive toward is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000516 ! sensitive toward +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20528,6 +21006,8 @@ def: "A size quality which is relatively normal or average" [] subset: value_slim is_a: PATO:0000117 ! size is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000117 ! size +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20538,6 +21018,8 @@ def: "An area which is relatively normal or average" [] subset: value_slim is_a: PATO:0001323 ! area is_a: PATO:0045050 ! normal size +intersection_of: PATO:0001323 ! area +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20548,6 +21030,8 @@ def: "A depth quality which is relatively normal or average" [] subset: value_slim is_a: PATO:0001595 ! depth is_a: PATO:0045050 ! normal size +intersection_of: PATO:0001595 ! depth +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20558,6 +21042,8 @@ def: "A height which is relatively normal or average" [] subset: value_slim is_a: PATO:0000119 ! height is_a: PATO:0045050 ! normal size +intersection_of: PATO:0000119 ! height +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20568,6 +21054,8 @@ def: "A length quality which is relatively normal or average" [] subset: value_slim is_a: PATO:0000122 ! length is_a: PATO:0045050 ! normal size +intersection_of: PATO:0000122 ! length +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20578,6 +21066,8 @@ def: "A diameter which is relatively normal or average" [] subset: value_slim is_a: PATO:0001334 ! diameter is_a: PATO:0045054 ! normal length +intersection_of: PATO:0001334 ! diameter +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20588,6 +21078,8 @@ def: "An anterior-posterior diameter which is relatively normal or average" [] subset: value_slim is_a: PATO:0002041 ! anterior-posterior diameter is_a: PATO:0045055 ! normal diameter +intersection_of: PATO:0002041 ! anterior-posterior diameter +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20598,6 +21090,8 @@ def: "A perimeter which is relatively normal or average" [] subset: value_slim is_a: PATO:0001711 ! perimeter is_a: PATO:0045054 ! normal length +intersection_of: PATO:0001711 ! perimeter +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20608,6 +21102,8 @@ def: "A circumference which is relatively normal or average" [] subset: value_slim is_a: PATO:0001648 ! circumference is_a: PATO:0045057 ! normal perimeter +intersection_of: PATO:0001648 ! circumference +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20618,6 +21114,8 @@ def: "A thickness which is relatively normal or average" [] subset: value_slim is_a: PATO:0000915 ! thickness is_a: PATO:0045050 ! normal size +intersection_of: PATO:0000915 ! thickness +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20629,6 +21127,8 @@ subset: mpath_slim subset: value_slim is_a: PATO:0000918 ! volume is_a: PATO:0045050 ! normal size +intersection_of: PATO:0000918 ! volume +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20639,6 +21139,8 @@ def: "A width which is relatively normal or average" [] subset: value_slim is_a: PATO:0000921 ! width is_a: PATO:0045050 ! normal size +intersection_of: PATO:0000921 ! width +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20651,6 +21153,8 @@ subset: relational_slim subset: value_slim is_a: PATO:0001537 ! soluble in is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001537 ! soluble in +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20661,6 +21165,8 @@ def: "A speed which is relatively normal or average" [] subset: value_slim is_a: PATO:0000008 ! speed is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000008 ! speed +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20671,6 +21177,8 @@ def: "A strength which is relatively normal or average" [] subset: value_slim is_a: PATO:0001230 ! strength is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001230 ! strength +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20682,6 +21190,8 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001815 ! fatigability is_a: PATO:0045064 ! normal strength +intersection_of: PATO:0001815 ! fatigability +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20694,6 +21204,8 @@ subset: relational_slim subset: value_slim is_a: PATO:0001152 ! susceptible toward is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001152 ! susceptible toward +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20704,6 +21216,8 @@ def: "A temperature which is relatively normal or average" [] subset: value_slim is_a: PATO:0000146 ! temperature is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000146 ! temperature +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20714,6 +21228,8 @@ def: "A tendency which is relatively normal or average" [] subset: value_slim is_a: PATO:0002360 ! tendency is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002360 ! tendency +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20726,6 +21242,8 @@ subset: relational_slim subset: value_slim is_a: PATO:0000152 ! threshold is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000152 ! threshold +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20737,6 +21255,8 @@ subset: relational_slim subset: value_slim is_a: PATO:0000515 ! tolerant to is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000515 ! tolerant to +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20748,6 +21268,8 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001439 ! tonicity is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001439 ! tonicity +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20759,6 +21281,8 @@ subset: cell_quality subset: value_slim is_a: PATO:0001620 ! turgor is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001620 ! turgor +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20767,7 +21291,8 @@ id: PATO:0045073 name: normal process quality def: "A quality of aprocess that has a value that is normal or average." [] is_a: PATO:0001236 ! process quality -relationship: has_relative_magnitude PATO:0000461 ! normal +intersection_of: PATO:0001236 ! process quality +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-21T14:11:01Z @@ -20776,8 +21301,8 @@ id: PATO:0045074 name: normal variability def: "A variability which is relatively normal or average" [] subset: value_slim -is_a: PATO:0001227 ! variant -relationship: has_relative_magnitude PATO:0000461 ! normal +intersection_of: PATO:0001227 ! variant +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20786,8 +21311,8 @@ id: PATO:0045075 name: normal variability of color def: "A variability which is relatively normal or average" [] subset: value_slim -is_a: PATO:0001615 ! variant color -relationship: has_relative_magnitude PATO:0000461 ! normal +intersection_of: PATO:0001615 ! variant color +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20796,8 +21321,8 @@ id: PATO:0045076 name: normal variability of rate def: "A variability of rate which is relatively normal or average" [] subset: value_slim -is_a: PATO:0001586 ! variability of rate -relationship: has_relative_magnitude PATO:0000461 ! normal +intersection_of: PATO:0001586 ! variability of rate +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20806,8 +21331,8 @@ id: PATO:0045077 name: normal variability of size def: "A variability of size which is relatively normal or average" [] subset: value_slim -is_a: PATO:0001956 ! variability of size -relationship: has_relative_magnitude PATO:0000461 ! normal +intersection_of: PATO:0001956 ! variability of size +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20816,8 +21341,8 @@ id: PATO:0045078 name: normal variability of temperature def: "A variability of temperature which is relatively normal or average" [] subset: value_slim -is_a: PATO:0001314 ! variant temperature -relationship: has_relative_magnitude PATO:0000461 ! normal +intersection_of: PATO:0001314 ! variant temperature +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20828,6 +21353,8 @@ def: "A velocity which is relatively normal or average" [] subset: value_slim is_a: PATO:0002242 ! velocity is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002242 ! velocity +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20838,6 +21365,8 @@ def: "A virulence which is relatively normal or average" [] subset: value_slim is_a: PATO:0002146 ! virulence is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002146 ! virulence +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20848,6 +21377,8 @@ def: "A viscosity which is relatively normal or average" [] subset: value_slim is_a: PATO:0000998 ! viscous is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0000998 ! viscous +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20858,6 +21389,8 @@ def: "A waxiness which is relatively normal or average" [] subset: value_slim is_a: PATO:0002381 ! waxiness is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0002381 ! waxiness +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20868,6 +21401,8 @@ def: "A wetness which is relatively normal or average" [] subset: value_slim is_a: PATO:0001823 ! wet is_a: PATO:0045001 ! normal object quality +intersection_of: PATO:0001823 ! wet +intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20878,6 +21413,8 @@ def: "A duration quality of a process which is relatively normal." [] subset: value_slim is_a: PATO:0001309 ! duration is_a: PATO:0045073 ! normal process quality +intersection_of: PATO:0001309 ! duration +intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045085 @@ -20886,6 +21423,8 @@ def: "A duration quality of temperature quality of a process which is relatively subset: value_slim is_a: PATO:0001310 ! duration of temperature is_a: PATO:0045084 ! normal duration +intersection_of: PATO:0001310 ! duration of temperature +intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045086 @@ -20894,6 +21433,8 @@ def: "An occurrence which is relatively normal." [] subset: value_slim is_a: PATO:0000057 ! occurrence is_a: PATO:0045073 ! normal process quality +intersection_of: PATO:0000057 ! occurrence +intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045087 @@ -20903,6 +21444,8 @@ subset: mpath_slim subset: value_slim is_a: PATO:0000044 ! frequency is_a: PATO:0045000 ! normal rate +intersection_of: PATO:0000044 ! frequency +intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045088 @@ -20912,6 +21455,8 @@ subset: relational_slim subset: value_slim is_a: PATO:0001457 ! sensitivity of a process is_a: PATO:0045073 ! normal process quality +intersection_of: PATO:0001457 ! sensitivity of a process +intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045089 @@ -20921,6 +21466,8 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001459 ! aerobic (for occurrence) is_a: PATO:0045088 ! normal sensitivity of a process +intersection_of: PATO:0001459 ! aerobic (for occurrence) +intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045090 @@ -20937,7 +21484,7 @@ name: north def: "North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west." [Wikipedia:http\://en.wikipedia.org/wiki/North] subset: value_slim is_a: PATO:0045090 ! cardinal direction -property_value: RO:0002604 PATO:0045093 +relationship: is_opposite_of PATO:0045093 ! south created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20947,7 +21494,7 @@ name: east def: "East is one of the four cardinal directions or points of the compass. It is the opposite direction from west." [Wikipedia:http\://en.wikipedia.org/wiki/East] subset: value_slim is_a: PATO:0045090 ! cardinal direction -property_value: RO:0002604 PATO:0045094 +relationship: is_opposite_of PATO:0045094 ! west created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20957,7 +21504,7 @@ name: south def: "South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west." [Wikipedia:http\://en.wikipedia.org/wiki/South] subset: value_slim is_a: PATO:0045090 ! cardinal direction -property_value: RO:0002604 PATO:0045091 +relationship: is_opposite_of PATO:0045091 ! north created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20967,7 +21514,7 @@ name: west def: "West is one of the four cardinal directions or points of the compass. It is the opposite direction from east." [Wikipedia:http\://en.wikipedia.org/wiki/West] subset: value_slim is_a: PATO:0045090 ! cardinal direction -property_value: RO:0002604 PATO:0045092 +relationship: is_opposite_of PATO:0045092 ! east created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20987,8 +21534,8 @@ is_a: PATO:0000161 ! rate id: PATO:0055001 name: decreased spatial extent of a process def: "A spatial distribution of a process in which the process occupies a smaller length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type." [orcid:0000-0003-4148-4606] -is_a: PATO:0002302 ! decreased process quality -is_a: PATO:0010005 ! spatial distribution of a process +intersection_of: PATO:0010005 ! spatial distribution of a process +intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal created_by: midori creation_date: 2019-07-29T14:22:24Z @@ -20996,8 +21543,8 @@ creation_date: 2019-07-29T14:22:24Z id: PATO:0055002 name: increased spatial extent of a process def: "A spatial distribution of a process in which the process occupies a greater length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type." [https://orcid.org/0000-0003-4148-4606] -is_a: PATO:0002304 ! increased process quality -is_a: PATO:0010005 ! spatial distribution of a process +intersection_of: PATO:0010005 ! spatial distribution of a process +intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal created_by: midori creation_date: 2019-07-29T14:23:31Z @@ -21088,22 +21635,10 @@ is_a: has_ratio_quality ! has_ratio_quality [Typedef] id: has_part -name: has part name: has_part -def: "a core relation that holds between a whole and its part" [] def: "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2." [PATOC:CJM] comment: We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. xref: BFO:0000051 -property_value: IAO:0000111 "has part" xsd:string -property_value: IAO:0000112 "my body has part my brain (continuant parthood, two material entities)" xsd:string -property_value: IAO:0000112 "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" xsd:string -property_value: IAO:0000112 "this year has part this day (occurrent parthood)" xsd:string -property_value: IAO:0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." xsd:string -property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string -property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string -property_value: IAO:0000118 "has_part" xsd:string -property_value: RO:0001900 RO:0001901 -is_transitive: true [Typedef] id: has_ratio_quality @@ -21145,6 +21680,13 @@ id: is_measurement_of name: is_measurement_of namespace: pato.ontology +[Typedef] +id: is_opposite_of +name: is opposite of +xref: RO:0002604 +is_metadata_tag: true +is_class_level: true + [Typedef] id: is_unit_of name: is_unit_of @@ -21152,22 +21694,9 @@ namespace: pato.ontology [Typedef] id: part_of -name: part of name: part_of -def: "a core relation that holds between a part and its whole" [] xref: BFO:0000050 -property_value: IAO:0000111 "is part of" xsd:string -property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string -property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string -property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string -property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string -property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string -property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string -property_value: IAO:0000118 "part_of" xsd:string -property_value: RO:0001900 RO:0001901 -property_value: seeAlso http://www.obofoundry.org/ro/#OBO_REL:part_of xsd:string is_transitive: true -inverse_of: has_part ! has part [Typedef] id: realized_by From 3bf449df8aa5a77322e71ef4d7efdc0d07f5fbf4 Mon Sep 17 00:00:00 2001 From: matentzn Date: Tue, 29 Oct 2019 10:10:17 +0000 Subject: [PATCH 07/13] new release --- imports/chebi_import.json | 139 +- imports/chebi_import.obo | 29 +- imports/chebi_import.owl | 270 +- imports/go_import.json | 4943 ++++++++- imports/go_import.obo | 1666 ++- imports/go_import.owl | 4925 ++++++++- imports/pco_import.json | 5968 ++++++++++- imports/pco_import.obo | 1974 +++- imports/pco_import.owl | 5911 ++++++++++- imports/ro_import.json | 3491 ++++-- imports/ro_import.obo | 837 +- imports/ro_import.owl | 1105 +- imports/uberon_import.json | 515 +- imports/uberon_import.obo | 175 +- imports/uberon_import.owl | 591 +- pato-base.json | 556 +- pato-base.obo | 47 +- pato-base.owl | 97 +- pato-full.json | 10902 ++++++++++++------- pato-full.obo | 2517 ++++- pato-full.owl | 6613 ++++++++++-- pato-simple.json | 632 +- pato-simple.obo | 59 +- pato-simple.owl | 123 +- pato.json | 10950 ++++++++++++++++++- pato.obo | 49 +- pato.owl | 12223 +++++++++++++++++++++- src/metadata/README.md | 23 + src/metadata/pato.md | 48 + src/metadata/pato.yml | 27 + src/ontology/Dockerfile | 3 + src/ontology/Makefile | 7 +- src/ontology/imports/chebi_import.json | 139 +- src/ontology/imports/chebi_import.obo | 29 +- src/ontology/imports/chebi_import.owl | 270 +- src/ontology/imports/chebi_terms.txt | 2 + src/ontology/imports/go_import.json | 4943 ++++++++- src/ontology/imports/go_import.obo | 1666 ++- src/ontology/imports/go_import.owl | 4925 ++++++++- src/ontology/imports/go_terms.txt | 2 + src/ontology/imports/pco_import.json | 5968 ++++++++++- src/ontology/imports/pco_import.obo | 1974 +++- src/ontology/imports/pco_import.owl | 5911 ++++++++++- src/ontology/imports/pco_terms.txt | 4 + src/ontology/imports/ro_import.json | 3491 ++++-- src/ontology/imports/ro_import.obo | 837 +- src/ontology/imports/ro_import.owl | 1105 +- src/ontology/imports/ro_terms.txt | 3 + src/ontology/imports/uberon_import.json | 515 +- src/ontology/imports/uberon_import.obo | 175 +- src/ontology/imports/uberon_import.owl | 591 +- src/ontology/imports/uberon_terms.txt | 2 + src/ontology/merged-pato-edit.obo | 45 +- src/ontology/ontologyterms.txt | 2739 ++--- src/ontology/pato-edit.obo | 1 + src/ontology/pato-odk.yaml | 24 + src/ontology/pato.Makefile | 3 + src/ontology/reports/README.md | 3 + src/ontology/simple_seed.txt | 5 + src/ontology/tmp/README.md | 1 + src/scripts/update_repo.sh | 20 + 61 files changed, 103275 insertions(+), 9533 deletions(-) create mode 100644 src/metadata/README.md create mode 100644 src/metadata/pato.md create mode 100644 src/metadata/pato.yml create mode 100644 src/ontology/Dockerfile create mode 100644 src/ontology/imports/chebi_terms.txt create mode 100644 src/ontology/imports/go_terms.txt create mode 100644 src/ontology/imports/pco_terms.txt create mode 100644 src/ontology/imports/ro_terms.txt create mode 100644 src/ontology/imports/uberon_terms.txt create mode 100644 src/ontology/pato-odk.yaml create mode 100644 src/ontology/reports/README.md create mode 100644 src/ontology/tmp/README.md create mode 100644 src/scripts/update_repo.sh diff --git a/imports/chebi_import.json b/imports/chebi_import.json index 6fdb3b06..c3566c36 100644 --- a/imports/chebi_import.json +++ b/imports/chebi_import.json @@ -2,34 +2,155 @@ "graphs" : [ { "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/CHEBI_46662", + "meta" : { + "definition" : { + "val" : "In general, a mineral is a chemical substance that is normally crystalline formed and has been formed as a result of geological processes. The term also includes metamict substances (naturally occurring, formerly crystalline substances whose crystallinity has been destroyed by ionising radiation) and can include naturally occurring amorphous substances that have never been crystalline ('mineraloids') such as georgite and calciouranoite as well as substances formed by the action of geological processes on bigenic compounds ('biogenic minerals').", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/chebi#3_STAR" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "minerales", + "xrefs" : [ "ChEBI" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "minerals", + "xrefs" : [ "ChEBI" ] + }, { + "pred" : "hasExactSynonym", + "val" : "mineral", + "xrefs" : [ "ChEBI" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Minerale", + "xrefs" : [ "ChEBI" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "mineraux", + "xrefs" : [ "ChEBI" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "chebi_ontology" + } ] + }, "type" : "CLASS", "lbl" : "mineral" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_24431", + "meta" : { + "definition" : { + "val" : "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/chebi#3_STAR" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "chemical entity", + "xrefs" : [ "UniProt" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "chebi_ontology" + } ] + }, "type" : "CLASS", "lbl" : "chemical entity" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym", + "type" : "PROPERTY", + "lbl" : "has_exact_synonym" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref", + "type" : "PROPERTY", + "lbl" : "database_cross_reference" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "type" : "PROPERTY", + "lbl" : "shorthand" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", + "type" : "PROPERTY", + "lbl" : "in_subset" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "type" : "PROPERTY", + "lbl" : "has_obo_namespace" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", + "type" : "PROPERTY", + "lbl" : "has_obo_format_version" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", + "type" : "PROPERTY", + "lbl" : "has_related_synonym" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_59999", + "meta" : { + "definition" : { + "val" : "A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/chebi#3_STAR" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "Chemische Substanz", + "xrefs" : [ "ChEBI" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "chebi_ontology" + } ] + }, "type" : "CLASS", "lbl" : "chemical substance" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000115", + "type" : "PROPERTY", + "lbl" : "definition" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000051", + "meta" : { + "xrefs" : [ { + "val" : "BFO:0000051" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "chebi_ontology" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_cyclic", + "val" : "false" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_part" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has part" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#SubsetProperty", + "type" : "PROPERTY", + "lbl" : "subset_property" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "type" : "PROPERTY", + "lbl" : "has_alternative_id" } ], "edges" : [ { - "sub" : "http://purl.obolibrary.org/obo/CHEBI_59999", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/CHEBI_24431" - }, { "sub" : "http://purl.obolibrary.org/obo/CHEBI_46662", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/CHEBI_59999" + }, { + "sub" : "http://purl.obolibrary.org/obo/CHEBI_59999", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CHEBI_24431" } ], - "id" : "file:/imports/chebi_import.owl", + "id" : "http://purl.obolibrary.org/obo/pato/imports/chebi_import.owl", "meta" : { "subsets" : [ ], "xrefs" : [ ], - "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/source", - "val" : "http://purl.obolibrary.org/obo/chebi/131/chebi.owl" - } ] + "basicPropertyValues" : [ ], + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29/imports/chebi_import.owl" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ ], diff --git a/imports/chebi_import.obo b/imports/chebi_import.obo index bc91c66b..f26deab1 100644 --- a/imports/chebi_import.obo +++ b/imports/chebi_import.obo @@ -1,18 +1,43 @@ format-version: 1.2 -ontology: file:/imports/chebi_import.owl -property_value: http://purl.org/dc/elements/1.1/source http://purl.obolibrary.org/obo/chebi/131/chebi.owl +data-version: pato/releases/2019-10-29/imports/chebi_import.owl +subsetdef: 3_STAR "" +ontology: pato/imports/chebi_import [Term] id: CHEBI:24431 name: chemical entity +namespace: chebi_ontology +def: "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances." [] +subset: 3_STAR +synonym: "chemical entity" EXACT [UniProt] [Term] id: CHEBI:46662 name: mineral +namespace: chebi_ontology +def: "In general, a mineral is a chemical substance that is normally crystalline formed and has been formed as a result of geological processes. The term also includes metamict substances (naturally occurring, formerly crystalline substances whose crystallinity has been destroyed by ionising radiation) and can include naturally occurring amorphous substances that have never been crystalline ('mineraloids') such as georgite and calciouranoite as well as substances formed by the action of geological processes on bigenic compounds ('biogenic minerals')." [] +subset: 3_STAR +synonym: "mineral" EXACT [ChEBI] +synonym: "Minerale" RELATED [ChEBI] +synonym: "minerales" RELATED [ChEBI] +synonym: "minerals" RELATED [ChEBI] +synonym: "mineraux" RELATED [ChEBI] is_a: CHEBI:59999 ! chemical substance [Term] id: CHEBI:59999 name: chemical substance +namespace: chebi_ontology +def: "A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types." [] +subset: 3_STAR +synonym: "Chemische Substanz" RELATED [ChEBI] is_a: CHEBI:24431 ! chemical entity +[Typedef] +id: has_part +name: has part +namespace: chebi_ontology +xref: BFO:0000051 +is_cyclic: false +is_transitive: true + diff --git a/imports/chebi_import.owl b/imports/chebi_import.owl index 13c938ed..b7723af3 100644 --- a/imports/chebi_import.owl +++ b/imports/chebi_import.owl @@ -1,17 +1,204 @@ - - - + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" + xmlns:chebi="http://purl.obolibrary.org/obo/chebi#3" + xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> + + + + + + + + + + + definition + + + + + + + + + + + + + + + + + + + + + + + + + + + + subset_property + + + + + + + + + + + + + + + + + + + + has_alternative_id + + + + + + + + database_cross_reference + + + + + + + + has_exact_synonym + + + + + + + + has_obo_format_version + + + + + + + + has_obo_namespace + + + + + + + + has_related_synonym + + + + + + + + + + + + + + in_subset + + + + + + + + + + + + + + + + + + + + shorthand + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + BFO:0000051 + chebi_ontology + has_part + false + has_part + has part + + + + - chemical entity + A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances. + chemical entity + chebi_ontology + CHEBI:24431 + + chemical entity + + + + chemical entity + UniProt + - mineral + In general, a mineral is a chemical substance that is normally crystalline formed and has been formed as a result of geological processes. The term also includes metamict substances (naturally occurring, formerly crystalline substances whose crystallinity has been destroyed by ionising radiation) and can include naturally occurring amorphous substances that have never been crystalline ('mineraloids') such as georgite and calciouranoite as well as substances formed by the action of geological processes on bigenic compounds ('biogenic minerals'). + mineral + chebi_ontology + Minerale + minerales + minerals + mineraux + CHEBI:46662 + + mineral + + + + mineral + ChEBI + + + + + Minerale + ChEBI + + + + + minerales + ChEBI + + + + + minerals + ChEBI + + + + + mineraux + ChEBI + - chemical substance + A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types. + chebi_ontology + Chemische Substanz + CHEBI:59999 + + chemical substance + + + + Chemische Substanz + ChEBI + - + diff --git a/imports/go_import.json b/imports/go_import.json index 83b1344d..804afece 100644 --- a/imports/go_import.json +++ b/imports/go_import.json @@ -1,120 +1,4979 @@ { "graphs" : [ { "nodes" : [ { - "id" : "http://purl.obolibrary.org/obo/GO_0120025", + "id" : "http://purl.obolibrary.org/obo/GO_0048585", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.", + "xrefs" : [ "GOC:jid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "down regulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of response to stimulus", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + } ] + }, "type" : "CLASS", - "lbl" : "plasma membrane bounded cell projection" + "lbl" : "negative regulation of response to stimulus" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0043227", + "id" : "http://purl.obolibrary.org/obo/GO_0048584", + "meta" : { + "definition" : { + "val" : "Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.", + "xrefs" : [ "GOC:jid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "upregulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of response to stimulus", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, "type" : "CLASS", - "lbl" : "membrane-bounded organelle" + "lbl" : "positive regulation of response to stimulus" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0048583", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.", + "xrefs" : [ "GOC:jid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of response to stimulus" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0050789", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.", + "xrefs" : [ "GOC:ai", "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_candida" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of physiological process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0050791" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of biological process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0003674", + "meta" : { + "definition" : { + "val" : "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.", + "xrefs" : [ "GOC:pdt" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecular function", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0005554" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code \"no data\" (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + } ] + }, + "type" : "CLASS", + "lbl" : "molecular_function" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0010646", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of cell communication" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0044424", + "meta" : { + "definition" : { + "val" : "OBSOLETE. Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.", + "xrefs" : [ "GOC:jl" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", + "val" : "GO:0005622" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete intracellular part" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005575", + "meta" : { + "definition" : { + "val" : "A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. 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For signaling between cells, signal transduction is restricted to events at and within the receiving cell.", + "xrefs" : [ "GOC:go_curators", "GOC:mtg_signaling_feb11" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_candida" ], + "xrefs" : [ { + "val" : "MIPS_funcat:30" + }, { + "val" : "Wikipedia:Signal_transduction" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "signaling cascade", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "signalling pathway", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "signalling cascade", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "signaling pathway", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that signal transduction is defined broadly to include a ligand interacting with a receptor, downstream signaling steps and a response being triggered. 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Note that specific transcription factors may be annotated to this term, but core/general transcription machinery such as RNA polymerase should not." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0023033" + } ] + }, + "type" : "CLASS", + "lbl" : "signal transduction" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0120025", + "meta" : { + "definition" : { + "val" : "A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon.", + "xrefs" : [ "GOC:krc" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "kchris" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-03-21T17:26:07Z" + } ] + }, + "type" : "CLASS", + "lbl" : "plasma membrane bounded cell projection" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043549", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.", + "xrefs" : [ "GOC:bf" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of kinase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0009987", + "meta" : { + "definition" : { + "val" : "Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. 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[ ], - "propertyChainAxioms" : [ ] + "propertyChainAxioms" : [ { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000066", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002213", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002212", "http://purl.obolibrary.org/obo/RO_0002212" ] + } ] } ] } \ No newline at end of file diff --git a/imports/go_import.obo b/imports/go_import.obo index 6a30a64d..1c196452 100644 --- a/imports/go_import.obo +++ b/imports/go_import.obo @@ -1,65 +1,1719 @@ format-version: 1.2 +data-version: pato/releases/2019-10-29/imports/go_import.owl +subsetdef: gocheck_do_not_annotate "" +subsetdef: gocheck_do_not_manually_annotate "" +subsetdef: goslim_agr "" +subsetdef: goslim_aspergillus "" +subsetdef: goslim_candida "" +subsetdef: goslim_chembl "" +subsetdef: goslim_flybase_ribbon "" +subsetdef: goslim_generic "" +subsetdef: goslim_metagenomics "" +subsetdef: goslim_mouse "" +subsetdef: goslim_pir "" +subsetdef: goslim_plant "" +subsetdef: goslim_pombe "" +subsetdef: goslim_yeast "" ontology: pato/imports/go_import +[Term] +id: GO:0003674 +name: molecular_function +namespace: molecular_function +alt_id: GO:0005554 +def: "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process." [GOC:pdt] +comment: Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex. +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +subset: goslim_yeast +synonym: "molecular function" EXACT [] + +[Term] +id: GO:0003824 +name: catalytic activity +namespace: molecular_function +def: "Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic." [GOC:vw, ISBN:0198506732] +subset: goslim_agr +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +synonym: "enzyme activity" EXACT [GOC:dph, GOC:tb] +xref: Wikipedia:Enzyme +is_a: GO:0003674 ! molecular_function + +[Term] +id: GO:0005102 +name: signaling receptor binding +namespace: molecular_function +def: "Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function." [GOC:bf, GOC:ceb, ISBN:0198506732] +comment: Where appropriate, also consider annotating to 'receptor agonist activity ; GO:0048018'. +subset: goslim_agr +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_mouse +subset: goslim_plant +synonym: "receptor binding" BROAD [] +synonym: "receptor ligand" NARROW [] +synonym: "receptor-associated protein activity" RELATED [] +xref: Wikipedia:Ligand_(biochemistry) +is_a: GO:0005515 ! protein binding + +[Term] +id: GO:0005488 +name: binding +namespace: molecular_function +def: "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule." [GOC:ceb, GOC:mah, ISBN:0198506732] +comment: Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children. +subset: gocheck_do_not_annotate +subset: goslim_pir +subset: goslim_plant +synonym: "ligand" NARROW [] +xref: Wikipedia:Binding_(molecular) +is_a: GO:0003674 ! molecular_function + +[Term] +id: GO:0005515 +name: protein binding +namespace: molecular_function +alt_id: GO:0001948 +alt_id: GO:0045308 +def: "Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules)." [GOC:go_curators] +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +synonym: "glycoprotein binding" NARROW [] +synonym: "protein amino acid binding" EXACT [] +xref: MIPS_funcat:16.01 +xref: MIPS_funcat:18.01.07 +xref: Reactome:R-HSA-170835 "An anchoring protein, ZFYVE9 (SARA), recruits SMAD2/3" +xref: Reactome:R-HSA-170846 "TGFBR2 recruits TGFBR1" +is_a: GO:0005488 ! binding + [Term] id: GO:0005575 name: cellular_component +namespace: cellular_component +alt_id: GO:0008372 +def: "A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome)." [GOC:pdt, NIF_Subcellular:sao1337158144] +comment: Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +subset: goslim_yeast +synonym: "cell or subcellular entity" EXACT [] +synonym: "cellular component" EXACT [] +synonym: "subcellular entity" RELATED [NIF_Subcellular:nlx_subcell_100315] +xref: NIF_Subcellular:sao1337158144 + +[Term] +id: GO:0005622 +name: intracellular +namespace: cellular_component +def: "The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." [ISBN:0198506732] +subset: gocheck_do_not_annotate +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_plant +synonym: "internal to cell" EXACT [] +synonym: "nucleocytoplasm" RELATED [GOC:mah] +synonym: "protoplasm" EXACT [] +synonym: "protoplast" RELATED [GOC:mah] +xref: Wikipedia:Intracellular +is_a: GO:0005575 ! cellular_component [Term] id: GO:0005623 name: cell +namespace: cellular_component +def: "The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope." [GOC:go_curators] +subset: goslim_chembl +subset: goslim_generic +subset: goslim_plant +xref: NIF_Subcellular:sao1813327414 +xref: Wikipedia:Cell_(biology) is_a: GO:0005575 ! cellular_component +property_value: IAO:0000589 "cell and encapsulating structures" xsd:string [Term] id: GO:0005634 name: nucleus +namespace: cellular_component +def: "A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent." [GOC:go_curators] +subset: goslim_agr +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_mouse +subset: goslim_pir +subset: goslim_plant +subset: goslim_yeast +synonym: "cell nucleus" EXACT [] +synonym: "horsetail nucleus" NARROW [GOC:al, GOC:mah, GOC:vw, PMID:15030757] +xref: MIPS_funcat:70.10 +xref: NIF_Subcellular:sao1702920020 +xref: Wikipedia:Cell_nucleus is_a: GO:0043231 ! intracellular membrane-bounded organelle +[Term] +id: GO:0005886 +name: plasma membrane +namespace: cellular_component +alt_id: GO:0005904 +def: "The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins." [ISBN:0716731363] +subset: goslim_agr +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_mouse +subset: goslim_plant +subset: goslim_yeast +synonym: "bacterial inner membrane" NARROW [] +synonym: "cell membrane" EXACT [] +synonym: "cellular membrane" EXACT [NIF_Subcellular:sao6433132645] +synonym: "cytoplasmic membrane" EXACT [] +synonym: "inner endospore membrane" NARROW [] +synonym: "juxtamembrane" BROAD [] +synonym: "plasma membrane lipid bilayer" NARROW [GOC:mah] +synonym: "plasmalemma" EXACT [] +xref: NIF_Subcellular:sao1663586795 +xref: Wikipedia:Cell_membrane +is_a: GO:0016020 ! membrane +relationship: part_of GO:0071944 ! cell periphery + [Term] id: GO:0005929 name: cilium +namespace: cellular_component +alt_id: GO:0072372 +def: "A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body." [GOC:cilia, GOC:curators, GOC:kmv, GOC:vw, ISBN:0198547684, PMID:16824949, PMID:17009929, PMID:20144998] +comment: Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms. +subset: goslim_chembl +subset: goslim_generic +subset: goslim_pir +synonym: "eukaryotic flagellum" EXACT [] +synonym: "flagellum" RELATED [] +synonym: "microtubule-based flagellum" EXACT [] +synonym: "primary cilium" NARROW [] +xref: FMA:67181 +xref: NIF_Subcellular:sao787716553 +xref: Wikipedia:Cilium is_a: GO:0043226 ! organelle is_a: GO:0120025 ! plasma membrane bounded cell projection +relationship: has_part GO:0030990 ! intraciliary transport particle + +[Term] +id: GO:0006793 +name: phosphorus metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4)." [GOC:ai] +subset: goslim_pir +synonym: "phosphorus metabolism" EXACT [] +is_a: GO:0044237 ! cellular metabolic process + +[Term] +id: GO:0006796 +name: phosphate-containing compound metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid." [GOC:ai] +synonym: "phosphate metabolic process" RELATED [] +synonym: "phosphate metabolism" EXACT [] +xref: MIPS_funcat:01.04 +is_a: GO:0006793 ! phosphorus metabolic process + +[Term] +id: GO:0007154 +name: cell communication +namespace: biological_process +def: "Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:mah] +subset: goslim_pir +subset: goslim_plant +xref: Wikipedia:Cell_signaling +is_a: GO:0009987 ! cellular process + +[Term] +id: GO:0007165 +name: signal transduction +namespace: biological_process +alt_id: GO:0023033 +def: "The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell." [GOC:go_curators, GOC:mtg_signaling_feb11] +comment: Note that signal transduction is defined broadly to include a ligand interacting with a receptor, downstream signaling steps and a response being triggered. A change in form of the signal in every step is not necessary. Note that in many cases the end of this process is regulation of the initiation of transcription. Note that specific transcription factors may be annotated to this term, but core/general transcription machinery such as RNA polymerase should not. +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_plant +synonym: "signaling cascade" NARROW [] +synonym: "signaling pathway" RELATED [] +synonym: "signalling cascade" NARROW [] +synonym: "signalling pathway" RELATED [GOC:mah] +xref: MIPS_funcat:30 +xref: Wikipedia:Signal_transduction +is_a: GO:0009987 ! cellular process +is_a: GO:0050794 ! regulation of cellular process +relationship: part_of GO:0007154 ! cell communication +relationship: part_of GO:0023052 ! signaling +relationship: part_of GO:0051716 ! cellular response to stimulus + +[Term] +id: GO:0008150 +name: biological_process +namespace: biological_process +alt_id: GO:0000004 +alt_id: GO:0007582 +alt_id: GO:0044699 +def: "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." [GOC:pdt] +comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +subset: goslim_pombe +subset: goslim_yeast +synonym: "biological process" EXACT [] +synonym: "physiological process" EXACT [] +synonym: "single organism process" RELATED [] +synonym: "single-organism process" RELATED [] +xref: Wikipedia:Biological_process +created_by: janelomax +creation_date: 2012-09-19T15:05:24Z + +[Term] +id: GO:0008152 +name: metabolic process +namespace: biological_process +alt_id: GO:0044236 +alt_id: GO:0044710 +def: "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation." [GOC:go_curators, ISBN:0198547684] +comment: Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions. +subset: gocheck_do_not_manually_annotate +subset: goslim_chembl +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +synonym: "metabolic process resulting in cell growth" NARROW [] +synonym: "metabolism" EXACT [] +synonym: "metabolism resulting in cell growth" NARROW [] +synonym: "multicellular organism metabolic process" NARROW [] +synonym: "single-organism metabolic process" RELATED [] +xref: MIPS_funcat:01 +xref: Wikipedia:Metabolism +is_a: GO:0008150 ! biological_process +created_by: janelomax +creation_date: 2012-10-17T15:46:40Z + +[Term] +id: GO:0009892 +name: negative regulation of metabolic process +namespace: biological_process +alt_id: GO:0044252 +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism." [GOC:go_curators] +synonym: "down regulation of metabolic process" EXACT [] +synonym: "down-regulation of metabolic process" EXACT [] +synonym: "downregulation of metabolic process" EXACT [] +synonym: "inhibition of metabolic process" NARROW [] +synonym: "inhibition of organismal metabolic process" NARROW [] +synonym: "negative regulation of metabolism" EXACT [] +synonym: "negative regulation of multicellular organismal metabolic process" NARROW [] +synonym: "negative regulation of organismal metabolism" EXACT [] +is_a: GO:0019222 ! regulation of metabolic process +is_a: GO:0048519 ! negative regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0008152 ! metabolic process +relationship: negatively_regulates GO:0008152 ! metabolic process + +[Term] +id: GO:0009893 +name: positive regulation of metabolic process +namespace: biological_process +alt_id: GO:0044253 +def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism." [GOC:go_curators] +synonym: "activation of metabolic process" NARROW [] +synonym: "positive regulation of metabolism" EXACT [] +synonym: "positive regulation of multicellular organismal metabolic process" NARROW [] +synonym: "positive regulation of organismal metabolism" NARROW [] +synonym: "stimulation of metabolic process" NARROW [] +synonym: "stimulation of organismal metabolic process" NARROW [] +synonym: "up regulation of metabolic process" EXACT [] +synonym: "up-regulation of metabolic process" EXACT [] +synonym: "up-regulation of organismal metabolic process" NARROW [] +synonym: "upregulation of metabolic process" EXACT [] +is_a: GO:0019222 ! regulation of metabolic process +is_a: GO:0048518 ! positive regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0008152 ! metabolic process +relationship: positively_regulates GO:0008152 ! metabolic process + +[Term] +id: GO:0009966 +name: regulation of signal transduction +namespace: biological_process +alt_id: GO:0035466 +def: "Any process that modulates the frequency, rate or extent of signal transduction." [GOC:sm] +synonym: "regulation of signaling pathway" RELATED [] +synonym: "regulation of signalling pathway" RELATED [GOC:mah] +is_a: GO:0010646 ! regulation of cell communication +is_a: GO:0023051 ! regulation of signaling +is_a: GO:0048583 ! regulation of response to stimulus +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0007165 ! signal transduction +relationship: regulates GO:0007165 ! signal transduction + +[Term] +id: GO:0009967 +name: positive regulation of signal transduction +namespace: biological_process +alt_id: GO:0035468 +def: "Any process that activates or increases the frequency, rate or extent of signal transduction." [GOC:sm] +synonym: "activation of signal transduction" NARROW [] +synonym: "positive regulation of signaling pathway" RELATED [] +synonym: "positive regulation of signalling pathway" RELATED [GOC:mah] +synonym: "stimulation of signal transduction" NARROW [] +synonym: "up regulation of signal transduction" EXACT [] +synonym: "up-regulation of signal transduction" EXACT [] +synonym: "upregulation of signal transduction" EXACT [] +is_a: GO:0009966 ! regulation of signal transduction +is_a: GO:0010647 ! positive regulation of cell communication +is_a: GO:0023056 ! positive regulation of signaling +is_a: GO:0048584 ! positive regulation of response to stimulus +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0007165 ! signal transduction +relationship: positively_regulates GO:0007165 ! signal transduction + +[Term] +id: GO:0009968 +name: negative regulation of signal transduction +namespace: biological_process +alt_id: GO:0035467 +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction." [GOC:sm] +synonym: "down regulation of signal transduction" EXACT [] +synonym: "down-regulation of signal transduction" EXACT [] +synonym: "downregulation of signal transduction" EXACT [] +synonym: "inhibition of signal transduction" NARROW [] +synonym: "negative regulation of signaling pathway" RELATED [] +synonym: "negative regulation of signalling pathway" RELATED [GOC:mah] +is_a: GO:0009966 ! regulation of signal transduction +is_a: GO:0010648 ! negative regulation of cell communication +is_a: GO:0023057 ! negative regulation of signaling +is_a: GO:0048585 ! negative regulation of response to stimulus +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0007165 ! signal transduction +relationship: negatively_regulates GO:0007165 ! signal transduction + +[Term] +id: GO:0009987 +name: cellular process +namespace: biological_process +alt_id: GO:0008151 +alt_id: GO:0044763 +alt_id: GO:0050875 +def: "Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:go_curators, GOC:isa_complete] +subset: goslim_plant +synonym: "cell growth and/or maintenance" NARROW [] +synonym: "cell physiology" EXACT [] +synonym: "cellular physiological process" EXACT [] +synonym: "single-organism cellular process" RELATED [] +is_a: GO:0008150 ! biological_process +created_by: janelomax +creation_date: 2012-12-11T16:56:55Z + +[Term] +id: GO:0010562 +name: positive regulation of phosphorus metabolic process +namespace: biological_process +def: "Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus." [GOC:dph, GOC:tb] +is_a: GO:0031325 ! positive regulation of cellular metabolic process +is_a: GO:0051174 ! regulation of phosphorus metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0006793 ! phosphorus metabolic process +relationship: positively_regulates GO:0006793 ! phosphorus metabolic process + +[Term] +id: GO:0010563 +name: negative regulation of phosphorus metabolic process +namespace: biological_process +def: "Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus." [GOC:dph, GOC:tb] +is_a: GO:0031324 ! negative regulation of cellular metabolic process +is_a: GO:0051174 ! regulation of phosphorus metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0006793 ! phosphorus metabolic process +relationship: negatively_regulates GO:0006793 ! phosphorus metabolic process + +[Term] +id: GO:0010646 +name: regulation of cell communication +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:dph, GOC:tb] +is_a: GO:0050794 ! regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0007154 ! cell communication +relationship: regulates GO:0007154 ! cell communication + +[Term] +id: GO:0010647 +name: positive regulation of cell communication +namespace: biological_process +def: "Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:dph, GOC:tb] +is_a: GO:0010646 ! regulation of cell communication +is_a: GO:0048522 ! positive regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0007154 ! cell communication +relationship: positively_regulates GO:0007154 ! cell communication + +[Term] +id: GO:0010648 +name: negative regulation of cell communication +namespace: biological_process +def: "Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:dph, GOC:tb] +is_a: GO:0010646 ! regulation of cell communication +is_a: GO:0048523 ! negative regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0007154 ! cell communication +relationship: negatively_regulates GO:0007154 ! cell communication + +[Term] +id: GO:0016020 +name: membrane +namespace: cellular_component +def: "A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it." [GOC:dos, GOC:mah, ISBN:0815316194] +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +subset: goslim_yeast +xref: Wikipedia:Biological_membrane +is_a: GO:0110165 ! cellular anatomical entity + +[Term] +id: GO:0016301 +name: kinase activity +namespace: molecular_function +def: "Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [ISBN:0198506732] +comment: Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term. +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_plant +subset: goslim_yeast +synonym: "phosphokinase activity" EXACT [] +xref: Reactome:R-HSA-6788855 "FN3KRP phosphorylates PsiAm, RibAm" +xref: Reactome:R-HSA-6788867 "FN3K phosphorylates ketosamines" +is_a: GO:0016772 ! transferase activity, transferring phosphorus-containing groups +relationship: part_of GO:0016310 ! phosphorylation + +[Term] +id: GO:0016310 +name: phosphorylation +namespace: biological_process +def: "The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide." [ISBN:0198506732] +subset: goslim_chembl +subset: goslim_metagenomics +xref: Wikipedia:Phosphorylation +is_a: GO:0006796 ! phosphate-containing compound metabolic process + +[Term] +id: GO:0016740 +name: transferase activity +namespace: molecular_function +def: "Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2." [ISBN:0198506732] +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_metagenomics +subset: goslim_mouse +subset: goslim_pir +subset: goslim_plant +subset: goslim_yeast +xref: EC:2 +xref: Reactome:R-HSA-1483089 "PE is converted to PS by PTDSS2" +xref: Reactome:R-HSA-1483186 "PC is converted to PS by PTDSS1" +xref: Reactome:R-HSA-5668414 "TRAF2 ubiquitinates cIAP1,2 in cIAP1,2:TRAF1:TRAF2:TRAF3:NIK" +xref: Reactome:R-HSA-6787403 "GTPBP3 and MTO1 transform uridine-34 yielding 5-taurinomethyluridine-34 in tRNA" +xref: Reactome:R-HSA-8868783 "TSR3 transfers aminocarboxypropyl group from S-adenosylmethionine to N(1)-methylpseudouridine-1248 of 18SE rRNA yielding N(1)-methyl-N(3)-aminocarboxypropylpseudouridine-1248" +is_a: GO:0003824 ! catalytic activity + +[Term] +id: GO:0016772 +name: transferase activity, transferring phosphorus-containing groups +namespace: molecular_function +def: "Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor)." [GOC:jl, ISBN:0198506732] +comment: Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides. +subset: goslim_chembl +xref: EC:2.7 +is_a: GO:0016740 ! transferase activity + +[Term] +id: GO:0019220 +name: regulation of phosphate metabolic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates." [GOC:go_curators] +synonym: "regulation of phosphate metabolism" EXACT [] +is_a: GO:0051174 ! regulation of phosphorus metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0006796 ! phosphate-containing compound metabolic process +relationship: regulates GO:0006796 ! phosphate-containing compound metabolic process + +[Term] +id: GO:0019222 +name: regulation of metabolic process +namespace: biological_process +alt_id: GO:0044246 +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism." [GOC:go_curators] +subset: goslim_metagenomics +synonym: "regulation of metabolism" EXACT [] +synonym: "regulation of multicellular organismal metabolic process" NARROW [] +synonym: "regulation of organismal metabolic process" NARROW [GOC:tb] +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0008152 ! metabolic process +relationship: regulates GO:0008152 ! metabolic process + +[Term] +id: GO:0023051 +name: regulation of signaling +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of a signaling process." [GOC:mtg_signal] +synonym: "regulation of signaling process" RELATED [GOC:bf] +synonym: "regulation of signalling process" RELATED [GOC:mah] +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0023052 ! signaling +relationship: regulates GO:0023052 ! signaling +creation_date: 2010-02-16T09:30:50Z + +[Term] +id: GO:0023052 +name: signaling +namespace: biological_process +alt_id: GO:0023046 +alt_id: GO:0044700 +def: "The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered." [GOC:mtg_signal, GOC:mtg_signaling_feb11, GOC:signaling] +comment: Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change. +subset: goslim_agr +subset: goslim_flybase_ribbon +subset: goslim_mouse +subset: goslim_pombe +subset: goslim_yeast +synonym: "biological signaling" EXACT [] +synonym: "signaling process" EXACT [] +synonym: "signalling" EXACT [] +synonym: "signalling process" RELATED [GOC:mah] +synonym: "single organism signaling" RELATED [] +is_a: GO:0008150 ! biological_process +created_by: janelomax +creation_date: 2010-02-16T09:30:50Z + +[Term] +id: GO:0023056 +name: positive regulation of signaling +namespace: biological_process +def: "Any process that activates, maintains or increases the frequency, rate or extent of a signaling process." [GOC:mtg_signal] +synonym: "positive regulation of signaling process" RELATED [GOC:bf] +synonym: "positive regulation of signalling process" EXACT [GOC:mah] +is_a: GO:0023051 ! regulation of signaling +is_a: GO:0048518 ! positive regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0023052 ! signaling +relationship: positively_regulates GO:0023052 ! signaling +creation_date: 2010-02-16T09:30:50Z + +[Term] +id: GO:0023057 +name: negative regulation of signaling +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process." [GOC:mtg_signal] +synonym: "negative regulation of signaling process" RELATED [GOC:bf] +synonym: "negative regulation of signalling process" RELATED [GOC:mah] +is_a: GO:0023051 ! regulation of signaling +is_a: GO:0048519 ! negative regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0023052 ! signaling +relationship: negatively_regulates GO:0023052 ! signaling +creation_date: 2010-02-16T09:30:50Z + +[Term] +id: GO:0030545 +name: receptor regulator activity +namespace: molecular_function +def: "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed." [GOC:ceb] +xref: MIPS_funcat:18.02.07 +is_a: GO:0098772 ! molecular function regulator + +[Term] +id: GO:0030546 +name: signaling receptor activator activity +namespace: molecular_function +def: "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased." [GOC:ceb] +synonym: "receptor activator activity" BROAD [] +is_a: GO:0030545 ! receptor regulator activity + +[Term] +id: GO:0030990 +name: intraciliary transport particle +namespace: cellular_component +def: "A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules." [GOC:cilia, GOC:kmv, PMID:14570576, PMID:22118932, PMID:23945166] +comment: Note that we deem cilia and microtubule-based flagella to be equivalent. +subset: goslim_pir +synonym: "IFT complex" RELATED [] +synonym: "intraflagellar transport complex" EXACT [] +synonym: "intraflagellar transport particle" EXACT [] +is_a: GO:0032991 ! protein-containing complex + +[Term] +id: GO:0031323 +name: regulation of cellular metabolic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances." [GOC:mah] +synonym: "regulation of cellular metabolism" EXACT [] +is_a: GO:0019222 ! regulation of metabolic process +is_a: GO:0050794 ! regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0044237 ! cellular metabolic process +relationship: regulates GO:0044237 ! cellular metabolic process + +[Term] +id: GO:0031324 +name: negative regulation of cellular metabolic process +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances." [GOC:mah] +synonym: "down regulation of cellular metabolic process" EXACT [] +synonym: "down-regulation of cellular metabolic process" EXACT [] +synonym: "downregulation of cellular metabolic process" EXACT [] +synonym: "inhibition of cellular metabolic process" NARROW [] +synonym: "negative regulation of cellular metabolism" EXACT [] +is_a: GO:0009892 ! negative regulation of metabolic process +is_a: GO:0031323 ! regulation of cellular metabolic process +is_a: GO:0048523 ! negative regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0044237 ! cellular metabolic process +relationship: negatively_regulates GO:0044237 ! cellular metabolic process + +[Term] +id: GO:0031325 +name: positive regulation of cellular metabolic process +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances." [GOC:mah] +synonym: "activation of cellular metabolic process" NARROW [] +synonym: "positive regulation of cellular metabolism" EXACT [] +synonym: "stimulation of cellular metabolic process" NARROW [] +synonym: "up regulation of cellular metabolic process" EXACT [] +synonym: "up-regulation of cellular metabolic process" EXACT [] +synonym: "upregulation of cellular metabolic process" EXACT [] +is_a: GO:0009893 ! positive regulation of metabolic process +is_a: GO:0031323 ! regulation of cellular metabolic process +is_a: GO:0048522 ! positive regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0044237 ! cellular metabolic process +relationship: positively_regulates GO:0044237 ! cellular metabolic process + +[Term] +id: GO:0032091 +name: negative regulation of protein binding +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding." [GOC:mah] +synonym: "down regulation of protein binding" EXACT [] +synonym: "down-regulation of protein binding" EXACT [] +synonym: "downregulation of protein binding" EXACT [] +synonym: "inhibition of protein binding" NARROW [] +is_a: GO:0043393 ! regulation of protein binding +is_a: GO:0051100 ! negative regulation of binding +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0005515 ! protein binding +relationship: negatively_regulates GO:0005515 ! protein binding + +[Term] +id: GO:0032092 +name: positive regulation of protein binding +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of protein binding." [GOC:mah] +synonym: "activation of protein binding" NARROW [] +synonym: "stimulation of protein binding" NARROW [] +synonym: "up regulation of protein binding" EXACT [] +synonym: "up-regulation of protein binding" EXACT [] +synonym: "upregulation of protein binding" EXACT [] +is_a: GO:0043393 ! regulation of protein binding +is_a: GO:0051099 ! positive regulation of binding +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0005515 ! protein binding +relationship: positively_regulates GO:0005515 ! protein binding + +[Term] +id: GO:0032991 +name: protein-containing complex +namespace: cellular_component +alt_id: GO:0043234 +def: "A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together." [GOC:dos, GOC:mah] +comment: A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole. +subset: goslim_agr +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_generic +subset: goslim_pir +synonym: "macromolecular complex" EXACT [] +synonym: "macromolecule complex" EXACT [] +synonym: "protein complex" NARROW [] +synonym: "protein containing complex" EXACT [] +synonym: "protein-protein complex" NARROW [] +is_a: GO:0005575 ! cellular_component + +[Term] +id: GO:0033673 +name: negative regulation of kinase activity +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [GOC:mah] +synonym: "down regulation of kinase activity" EXACT [] +synonym: "down-regulation of kinase activity" EXACT [] +synonym: "downregulation of kinase activity" EXACT [] +synonym: "inhibition of kinase activity" NARROW [] +synonym: "kinase inhibitor" NARROW [] +is_a: GO:0042326 ! negative regulation of phosphorylation +is_a: GO:0043549 ! regulation of kinase activity +is_a: GO:0051348 ! negative regulation of transferase activity +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0016301 ! kinase activity +relationship: negatively_regulates GO:0016301 ! kinase activity + +[Term] +id: GO:0033674 +name: positive regulation of kinase activity +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [GOC:mah] +synonym: "kinase activator" NARROW [] +synonym: "stimulation of kinase activity" NARROW [] +synonym: "up regulation of kinase activity" EXACT [] +synonym: "up-regulation of kinase activity" EXACT [] +synonym: "upregulation of kinase activity" EXACT [] +is_a: GO:0042327 ! positive regulation of phosphorylation +is_a: GO:0043549 ! regulation of kinase activity +is_a: GO:0051347 ! positive regulation of transferase activity +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0016301 ! kinase activity +relationship: positively_regulates GO:0016301 ! kinase activity + +[Term] +id: GO:0035556 +name: intracellular signal transduction +namespace: biological_process +alt_id: GO:0007242 +alt_id: GO:0007243 +alt_id: GO:0023013 +alt_id: GO:0023034 +def: "The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell." [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782] +synonym: "intracellular protein kinase cascade" NARROW [GOC:signaling] +synonym: "intracellular signal transduction pathway" NARROW [] +synonym: "intracellular signaling cascade" RELATED [GOC:signaling] +synonym: "intracellular signaling chain" EXACT [ISBN:3527303782] +synonym: "intracellular signaling pathway" RELATED [] +synonym: "protein kinase cascade" NARROW [GOC:signaling] +synonym: "signal transduction via intracellular signaling cascade" RELATED [] +synonym: "signal transmission via intracellular cascade" NARROW [] +is_a: GO:0007165 ! signal transduction +intersection_of: GO:0007165 ! signal transduction +intersection_of: occurs_in GO:0005622 ! intracellular +relationship: occurs_in GO:0005622 ! intracellular +created_by: rfoulger +creation_date: 2010-05-14T01:14:37Z + +[Term] +id: GO:0038023 +alt_id: GO:0004872 + +[Term] +id: GO:0042325 +name: regulation of phosphorylation +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule." [GOC:jl] +is_a: GO:0019220 ! regulation of phosphate metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0016310 ! phosphorylation +relationship: regulates GO:0016310 ! phosphorylation + +[Term] +id: GO:0042326 +name: negative regulation of phosphorylation +namespace: biological_process +def: "Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule." [GOC:jl] +synonym: "down regulation of phosphorylation" EXACT [] +synonym: "down-regulation of phosphorylation" EXACT [] +synonym: "downregulation of phosphorylation" EXACT [] +synonym: "inhibition of phosphorylation" NARROW [] +is_a: GO:0042325 ! regulation of phosphorylation +is_a: GO:0045936 ! negative regulation of phosphate metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0016310 ! phosphorylation +relationship: negatively_regulates GO:0016310 ! phosphorylation + +[Term] +id: GO:0042327 +name: positive regulation of phosphorylation +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule." [GOC:jl] +synonym: "activation of phosphorylation" NARROW [] +synonym: "stimulation of phosphorylation" NARROW [] +synonym: "up regulation of phosphorylation" EXACT [] +synonym: "up-regulation of phosphorylation" EXACT [] +synonym: "upregulation of phosphorylation" EXACT [] +is_a: GO:0042325 ! regulation of phosphorylation +is_a: GO:0045937 ! positive regulation of phosphate metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0016310 ! phosphorylation +relationship: positively_regulates GO:0016310 ! phosphorylation [Term] id: GO:0042995 name: cell projection -is_a: GO:0044464 ! cell part +namespace: cellular_component +def: "A prolongation or process extending from a cell, e.g. a flagellum or axon." [GOC:jl, http://www.cogsci.princeton.edu/~wn/] +subset: goslim_agr +subset: goslim_flybase_ribbon +subset: goslim_mouse +subset: goslim_pir +synonym: "cell process" BROAD [] +synonym: "cellular process" BROAD [] +synonym: "cellular projection" EXACT [] +is_a: GO:0110165 ! cellular anatomical entity + +[Term] +id: GO:0043085 +name: positive regulation of catalytic activity +namespace: biological_process +alt_id: GO:0048554 +def: "Any process that activates or increases the activity of an enzyme." [GOC:ebc, GOC:jl, GOC:tb, GOC:vw] +subset: goslim_chembl +synonym: "activation of enzyme activity" NARROW [] +synonym: "activation of metalloenzyme activity" NARROW [] +synonym: "positive regulation of enzyme activity" EXACT [GOC:tb] +synonym: "positive regulation of metalloenzyme activity" NARROW [] +synonym: "stimulation of enzyme activity" NARROW [] +synonym: "stimulation of metalloenzyme activity" NARROW [] +synonym: "up regulation of enzyme activity" EXACT [] +synonym: "up regulation of metalloenzyme activity" NARROW [] +synonym: "up-regulation of enzyme activity" EXACT [] +synonym: "up-regulation of metalloenzyme activity" NARROW [] +synonym: "upregulation of enzyme activity" EXACT [] +synonym: "upregulation of metalloenzyme activity" NARROW [] +xref: MIPS_funcat:18.02.01.01 +is_a: GO:0044093 ! positive regulation of molecular function +is_a: GO:0050790 ! regulation of catalytic activity +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0003824 ! catalytic activity +relationship: positively_regulates GO:0003824 ! catalytic activity + +[Term] +id: GO:0043086 +name: negative regulation of catalytic activity +namespace: biological_process +alt_id: GO:0048553 +def: "Any process that stops or reduces the activity of an enzyme." [GOC:ebc, GOC:jl, GOC:tb, GOC:vw] +synonym: "down regulation of enzyme activity" EXACT [] +synonym: "down regulation of metalloenzyme activity" NARROW [] +synonym: "down-regulation of enzyme activity" EXACT [] +synonym: "down-regulation of metalloenzyme activity" EXACT [] +synonym: "downregulation of enzyme activity" EXACT [] +synonym: "downregulation of metalloenzyme activity" NARROW [] +synonym: "inhibition of enzyme activity" NARROW [] +synonym: "inhibition of metalloenzyme activity" NARROW [] +synonym: "negative regulation of enzyme activity" EXACT [GOC:tb] +synonym: "negative regulation of metalloenzyme activity" NARROW [] +is_a: GO:0044092 ! negative regulation of molecular function +is_a: GO:0050790 ! regulation of catalytic activity +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0003824 ! catalytic activity +relationship: negatively_regulates GO:0003824 ! catalytic activity [Term] id: GO:0043226 name: organelle -is_a: GO:0005575 ! cellular_component +namespace: cellular_component +def: "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane." [GOC:go_curators] +subset: goslim_chembl +subset: goslim_generic +subset: goslim_pir +xref: NIF_Subcellular:sao1539965131 +xref: Wikipedia:Organelle +is_a: GO:0110165 ! cellular anatomical entity [Term] id: GO:0043227 name: membrane-bounded organelle +namespace: cellular_component +def: "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." [GOC:go_curators] +synonym: "membrane-enclosed organelle" EXACT [] +xref: NIF_Subcellular:sao414196390 is_a: GO:0043226 ! organelle [Term] id: GO:0043229 name: intracellular organelle +namespace: cellular_component +def: "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." [GOC:go_curators] +subset: goslim_pir is_a: GO:0043226 ! organelle -is_a: GO:0044424 ! intracellular part +intersection_of: GO:0043226 ! organelle +intersection_of: part_of GO:0005622 ! intracellular +relationship: part_of GO:0005622 ! intracellular [Term] id: GO:0043231 name: intracellular membrane-bounded organelle +namespace: cellular_component +def: "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." [GOC:go_curators] +subset: goslim_pir +synonym: "intracellular membrane-enclosed organelle" EXACT [] is_a: GO:0043227 ! membrane-bounded organelle is_a: GO:0043229 ! intracellular organelle +[Term] +id: GO:0043393 +name: regulation of protein binding +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of protein binding." [GOC:go_curators] +is_a: GO:0051098 ! regulation of binding +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0005515 ! protein binding +relationship: regulates GO:0005515 ! protein binding + +[Term] +id: GO:0043549 +name: regulation of kinase activity +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [GOC:bf] +is_a: GO:0042325 ! regulation of phosphorylation +is_a: GO:0051338 ! regulation of transferase activity +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0016301 ! kinase activity +relationship: regulates GO:0016301 ! kinase activity + +[Term] +id: GO:0044092 +name: negative regulation of molecular function +namespace: biological_process +def: "Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding." [GO:jl] +is_a: GO:0065009 ! regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0003674 ! molecular_function +relationship: negatively_regulates GO:0003674 ! molecular_function +created_by: jane +creation_date: 2009-04-21T04:07:27Z + +[Term] +id: GO:0044093 +name: positive regulation of molecular function +namespace: biological_process +def: "Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding." [GO:jl] +is_a: GO:0065009 ! regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0003674 ! molecular_function +relationship: positively_regulates GO:0003674 ! molecular_function +created_by: jane +creation_date: 2009-04-21T04:11:06Z + +[Term] +id: GO:0044237 +name: cellular metabolic process +namespace: biological_process +def: "The chemical reactions and pathways by which individual cells transform chemical substances." [GOC:go_curators] +synonym: "cellular metabolism" EXACT [] +synonym: "intermediary metabolism" RELATED [GOC:mah] +is_a: GO:0008152 ! metabolic process +is_a: GO:0009987 ! cellular process + [Term] id: GO:0044424 -name: intracellular part -is_a: GO:0044464 ! cell part +name: obsolete intracellular part +namespace: cellular_component +def: "OBSOLETE. Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." [GOC:jl] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_annotate +is_obsolete: true +consider: GO:0005622 [Term] id: GO:0044464 -name: cell part +name: obsolete cell part +namespace: cellular_component +def: "OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms." [GOC:jl] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_annotate +subset: goslim_pir +synonym: "cellular subcomponent" EXACT [NIF_Subcellular:sao628508602] +synonym: "protoplast" RELATED [GOC:mah] +xref: NIF_Subcellular:sao628508602 +is_obsolete: true +consider: CL:0000000 + +[Term] +id: GO:0045936 +name: negative regulation of phosphate metabolic process +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates." [GOC:go_curators] +synonym: "down regulation of phosphate metabolic process" EXACT [] +synonym: "down-regulation of phosphate metabolic process" EXACT [] +synonym: "downregulation of phosphate metabolic process" EXACT [] +synonym: "inhibition of phosphate metabolic process" NARROW [] +synonym: "negative regulation of phosphate metabolism" EXACT [] +is_a: GO:0010563 ! negative regulation of phosphorus metabolic process +is_a: GO:0019220 ! regulation of phosphate metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0006796 ! phosphate-containing compound metabolic process +relationship: negatively_regulates GO:0006796 ! phosphate-containing compound metabolic process + +[Term] +id: GO:0045937 +name: positive regulation of phosphate metabolic process +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates." [GOC:go_curators] +synonym: "activation of phosphate metabolic process" NARROW [] +synonym: "positive regulation of phosphate metabolism" EXACT [] +synonym: "stimulation of phosphate metabolic process" NARROW [] +synonym: "up regulation of phosphate metabolic process" EXACT [] +synonym: "up-regulation of phosphate metabolic process" EXACT [] +synonym: "upregulation of phosphate metabolic process" EXACT [] +is_a: GO:0010562 ! positive regulation of phosphorus metabolic process +is_a: GO:0019220 ! regulation of phosphate metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0006796 ! phosphate-containing compound metabolic process +relationship: positively_regulates GO:0006796 ! phosphate-containing compound metabolic process + +[Term] +id: GO:0048018 +name: receptor ligand activity +namespace: molecular_function +alt_id: GO:0071884 +def: "The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands)." [GOC:kv, GOC:molecular_function_refactoring, GOC:pdt] +comment: Definition discussed in https://github.com/geneontology/go-ontology/issues/14220 +subset: goslim_chembl +synonym: "receptor agonist activity" BROAD [GOC:molecular_function_refactoring] +synonym: "signaling molecule" EXACT [] +synonym: "signaling receptor ligand activity" EXACT [] +synonym: "vitamin D receptor activator activity" NARROW [] +is_a: GO:0005102 ! signaling receptor binding +is_a: GO:0030546 ! signaling receptor activator activity +relationship: part_of GO:0007165 ! signal transduction +created_by: midori +creation_date: 2010-09-13T04:51:59Z + +[Term] +id: GO:0048518 +name: positive regulation of biological process +namespace: biological_process +alt_id: GO:0043119 +def: "Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." [GOC:jid] +subset: gocheck_do_not_annotate +synonym: "activation of biological process" NARROW [] +synonym: "positive regulation of physiological process" EXACT [] +synonym: "stimulation of biological process" NARROW [] +synonym: "up regulation of biological process" EXACT [] +synonym: "up-regulation of biological process" EXACT [] +synonym: "upregulation of biological process" EXACT [] +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0008150 ! biological_process +relationship: positively_regulates GO:0008150 ! biological_process + +[Term] +id: GO:0048519 +name: negative regulation of biological process +namespace: biological_process +alt_id: GO:0043118 +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." [GOC:jid] +subset: gocheck_do_not_annotate +synonym: "down regulation of biological process" EXACT [] +synonym: "down-regulation of biological process" EXACT [] +synonym: "downregulation of biological process" EXACT [] +synonym: "inhibition of biological process" NARROW [] +synonym: "negative regulation of physiological process" EXACT [] +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0008150 ! biological_process +relationship: negatively_regulates GO:0008150 ! biological_process + +[Term] +id: GO:0048522 +name: positive regulation of cellular process +namespace: biological_process +alt_id: GO:0051242 +def: "Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:jid] +synonym: "activation of cellular process" NARROW [] +synonym: "positive regulation of cellular physiological process" EXACT [] +synonym: "stimulation of cellular process" NARROW [] +synonym: "up regulation of cellular process" EXACT [] +synonym: "up-regulation of cellular process" EXACT [] +synonym: "upregulation of cellular process" EXACT [] +is_a: GO:0048518 ! positive regulation of biological process +is_a: GO:0050794 ! regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0009987 ! cellular process +relationship: positively_regulates GO:0009987 ! cellular process + +[Term] +id: GO:0048523 +name: negative regulation of cellular process +namespace: biological_process +alt_id: GO:0051243 +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:jid] +synonym: "down regulation of cellular process" EXACT [] +synonym: "down-regulation of cellular process" EXACT [] +synonym: "downregulation of cellular process" EXACT [] +synonym: "inhibition of cellular process" NARROW [] +synonym: "negative regulation of cellular physiological process" EXACT [] +is_a: GO:0048519 ! negative regulation of biological process +is_a: GO:0050794 ! regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0009987 ! cellular process +relationship: negatively_regulates GO:0009987 ! cellular process + +[Term] +id: GO:0048583 +name: regulation of response to stimulus +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus." [GOC:jid] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_manually_annotate +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0050896 ! response to stimulus +relationship: regulates GO:0050896 ! response to stimulus + +[Term] +id: GO:0048584 +name: positive regulation of response to stimulus +namespace: biological_process +def: "Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus." [GOC:jid] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_manually_annotate +synonym: "activation of response to stimulus" NARROW [] +synonym: "stimulation of response to stimulus" NARROW [] +synonym: "up regulation of response to stimulus" EXACT [] +synonym: "up-regulation of response to stimulus" EXACT [] +synonym: "upregulation of response to stimulus" EXACT [] +is_a: GO:0048518 ! positive regulation of biological process +is_a: GO:0048583 ! regulation of response to stimulus +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0050896 ! response to stimulus +relationship: positively_regulates GO:0050896 ! response to stimulus + +[Term] +id: GO:0048585 +name: negative regulation of response to stimulus +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus." [GOC:jid] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_manually_annotate +synonym: "down regulation of response to stimulus" EXACT [] +synonym: "down-regulation of response to stimulus" EXACT [] +synonym: "downregulation of response to stimulus" EXACT [] +synonym: "inhibition of response to stimulus" NARROW [] +is_a: GO:0048519 ! negative regulation of biological process +is_a: GO:0048583 ! regulation of response to stimulus +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0050896 ! response to stimulus +relationship: negatively_regulates GO:0050896 ! response to stimulus + +[Term] +id: GO:0050789 +name: regulation of biological process +namespace: biological_process +alt_id: GO:0050791 +def: "Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." [GOC:ai, GOC:go_curators] +subset: gocheck_do_not_annotate +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_pir +synonym: "regulation of physiological process" EXACT [] +is_a: GO:0065007 ! biological regulation +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0008150 ! biological_process +relationship: regulates GO:0008150 ! biological_process + +[Term] +id: GO:0050790 +name: regulation of catalytic activity +namespace: biological_process +alt_id: GO:0048552 +def: "Any process that modulates the activity of an enzyme." [GOC:ai, GOC:ebc, GOC:vw] +subset: goslim_chembl +synonym: "regulation of enzyme activity" EXACT [] +synonym: "regulation of metalloenzyme activity" NARROW [] +xref: MIPS_funcat:18.02.01 +is_a: GO:0065009 ! regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0003824 ! catalytic activity +relationship: regulates GO:0003824 ! catalytic activity + +[Term] +id: GO:0050794 +name: regulation of cellular process +namespace: biological_process +alt_id: GO:0051244 +def: "Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:go_curators] +synonym: "regulation of cellular physiological process" EXACT [] +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0009987 ! cellular process +relationship: regulates GO:0009987 ! cellular process + +[Term] +id: GO:0050896 +name: response to stimulus +namespace: biological_process +alt_id: GO:0051869 +def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." [GOC:ai, GOC:bf] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_manually_annotate +subset: goslim_agr +subset: goslim_flybase_ribbon +subset: goslim_mouse +subset: goslim_pir +synonym: "physiological response to stimulus" EXACT [] +xref: MIPS_funcat:34.11 +is_a: GO:0008150 ! biological_process + +[Term] +id: GO:0051098 +name: regulation of binding +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule." [GOC:ai] +is_a: GO:0065009 ! regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0005488 ! binding +relationship: regulates GO:0005488 ! binding + +[Term] +id: GO:0051099 +name: positive regulation of binding +namespace: biological_process +def: "Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule." [GOC:ai] +synonym: "activation of binding" NARROW [] +synonym: "stimulation of binding" NARROW [] +synonym: "up regulation of binding" EXACT [] +synonym: "up-regulation of binding" EXACT [] +synonym: "upregulation of binding" EXACT [] +is_a: GO:0044093 ! positive regulation of molecular function +is_a: GO:0051098 ! regulation of binding +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0005488 ! binding +relationship: positively_regulates GO:0005488 ! binding + +[Term] +id: GO:0051100 +name: negative regulation of binding +namespace: biological_process +def: "Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule." [GOC:ai] +synonym: "down regulation of binding" EXACT [] +synonym: "down-regulation of binding" EXACT [] +synonym: "downregulation of binding" EXACT [] +synonym: "inhibition of binding" NARROW [] +is_a: GO:0044092 ! negative regulation of molecular function +is_a: GO:0051098 ! regulation of binding +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0005488 ! binding +relationship: negatively_regulates GO:0005488 ! binding + +[Term] +id: GO:0051174 +name: regulation of phosphorus metabolic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus." [GOC:ai] +synonym: "regulation of phosphorus metabolism" EXACT [] +is_a: GO:0031323 ! regulation of cellular metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0006793 ! phosphorus metabolic process +relationship: regulates GO:0006793 ! phosphorus metabolic process + +[Term] +id: GO:0051338 +name: regulation of transferase activity +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2." [EC:2.-.-.-, GOC:ai] +comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. +subset: gocheck_do_not_manually_annotate +synonym: "transferase regulator" EXACT [] +is_a: GO:0050790 ! regulation of catalytic activity +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0016740 ! transferase activity +relationship: regulates GO:0016740 ! transferase activity + +[Term] +id: GO:0051347 +name: positive regulation of transferase activity +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor." [GOC:ai] +comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. +subset: gocheck_do_not_manually_annotate +synonym: "activation of transferase activity" NARROW [] +synonym: "stimulation of transferase activity" NARROW [] +synonym: "transferase activator" EXACT [] +synonym: "up regulation of transferase activity" EXACT [] +synonym: "up-regulation of transferase activity" EXACT [] +synonym: "upregulation of transferase activity" EXACT [] +is_a: GO:0043085 ! positive regulation of catalytic activity +is_a: GO:0051338 ! regulation of transferase activity +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0016740 ! transferase activity +relationship: positively_regulates GO:0016740 ! transferase activity + +[Term] +id: GO:0051348 +name: negative regulation of transferase activity +namespace: biological_process +def: "Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor." [GOC:ai] +comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. +subset: gocheck_do_not_manually_annotate +synonym: "down regulation of transferase activity" EXACT [] +synonym: "down-regulation of transferase activity" EXACT [] +synonym: "downregulation of transferase activity" EXACT [] +synonym: "inhibition of transferase activity" NARROW [] +synonym: "transferase inhibitor" EXACT [] +is_a: GO:0043086 ! negative regulation of catalytic activity +is_a: GO:0051338 ! regulation of transferase activity +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0016740 ! transferase activity +relationship: negatively_regulates GO:0016740 ! transferase activity + +[Term] +id: GO:0051716 +name: cellular response to stimulus +namespace: biological_process +def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell." [GOC:bf, GOC:jl] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_manually_annotate +is_a: GO:0009987 ! cellular process +is_a: GO:0050896 ! response to stimulus + +[Term] +id: GO:0065007 +name: biological regulation +namespace: biological_process +def: "Any process that modulates a measurable attribute of any biological process, quality or function." [GOC:dph, GOC:isa_complete, GOC:mah, GOC:pr, GOC:vw] +subset: gocheck_do_not_annotate +subset: goslim_pir +synonym: "regulation" BROAD [] +is_a: GO:0008150 ! biological_process + +[Term] +id: GO:0065009 +name: regulation of molecular function +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding." [GOC:isa_complete] +subset: gocheck_do_not_annotate +subset: goslim_pir +subset: goslim_plant +synonym: "regulation of a molecular function" EXACT [] +is_a: GO:0065007 ! biological regulation +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0003674 ! molecular_function +relationship: regulates GO:0003674 ! molecular_function + +[Term] +id: GO:0071944 +name: cell periphery +namespace: cellular_component +def: "The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures." [GOC:mah] +subset: goslim_flybase_ribbon +is_a: GO:0110165 ! cellular anatomical entity +created_by: midori +creation_date: 2010-10-04T01:51:47Z + +[Term] +id: GO:0098590 +name: plasma membrane region +namespace: cellular_component +def: "A membrane that is a (regional) part of the plasma membrane." [GOC:dos] +comment: Note that this term should not be used for direct manual annotation as it should always be possible to choose a more specific subclass. +subset: gocheck_do_not_manually_annotate +synonym: "region of plasma membrane" EXACT [] +is_a: GO:0016020 ! membrane +intersection_of: GO:0016020 ! membrane +intersection_of: part_of GO:0005886 ! plasma membrane +relationship: part_of GO:0005886 ! plasma membrane +created_by: davidos +creation_date: 2014-03-06T11:55:32Z + +[Term] +id: GO:0098772 +name: molecular function regulator +namespace: molecular_function +def: "A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators." [GOC:dos, GOC:pt] +subset: goslim_flybase_ribbon +is_a: GO:0003674 ! molecular_function +relationship: part_of GO:0065009 ! regulation of molecular function + +[Term] +id: GO:0098796 +name: membrane protein complex +namespace: cellular_component +def: "Any protein complex that is part of a membrane." [GOC:dos] +subset: goslim_metagenomics +is_a: GO:0032991 ! protein-containing complex +intersection_of: GO:0032991 ! protein-containing complex +intersection_of: part_of GO:0016020 ! membrane +relationship: part_of GO:0016020 ! membrane + +[Term] +id: GO:0098797 +name: plasma membrane protein complex +namespace: cellular_component +def: "Any protein complex that is part of the plasma membrane." [GOC:dos] +is_a: GO:0098796 ! membrane protein complex +intersection_of: GO:0032991 ! protein-containing complex +intersection_of: part_of GO:0005886 ! plasma membrane +relationship: part_of GO:0005886 ! plasma membrane + +[Term] +id: GO:0110165 +name: cellular anatomical entity +namespace: cellular_component +def: "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex." [GOC:kmv] is_a: GO:0005575 ! cellular_component +created_by: kmv +creation_date: 2019-08-12T18:01:37Z [Term] id: GO:0120025 name: plasma membrane bounded cell projection +namespace: cellular_component +def: "A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon." [GOC:krc] is_a: GO:0042995 ! cell projection +intersection_of: GO:0042995 ! cell projection +intersection_of: has_part GO:0098590 ! plasma membrane region +relationship: has_part GO:0098590 ! plasma membrane region +created_by: kchris +creation_date: 2017-03-21T17:26:07Z + +[Term] +id: GO:1900120 +name: regulation of receptor binding +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor." [GOC:signaling, GOC:TermGenie] +synonym: "regulation of receptor ligand" NARROW [GOC:TermGenie] +is_a: GO:0043393 ! regulation of protein binding +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0005102 ! signaling receptor binding +relationship: regulates GO:0005102 ! signaling receptor binding +created_by: bf +creation_date: 2012-02-22T11:40:53Z + +[Term] +id: GO:1900121 +name: negative regulation of receptor binding +namespace: biological_process +def: "Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor." [GOC:signaling, GOC:TermGenie] +synonym: "down regulation of receptor binding" EXACT [GOC:TermGenie] +synonym: "down regulation of receptor-associated protein activity" RELATED [GOC:TermGenie] +synonym: "down-regulation of receptor binding" EXACT [GOC:TermGenie] +synonym: "downregulation of receptor binding" EXACT [GOC:TermGenie] +synonym: "inhibition of receptor binding" NARROW [GOC:TermGenie] +synonym: "inhibition of receptor ligand" NARROW [GOC:TermGenie] +is_a: GO:0032091 ! negative regulation of protein binding +is_a: GO:1900120 ! regulation of receptor binding +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0005102 ! signaling receptor binding +relationship: negatively_regulates GO:0005102 ! signaling receptor binding +created_by: bf +creation_date: 2012-02-22T11:40:57Z + +[Term] +id: GO:1900122 +name: positive regulation of receptor binding +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor." [GOC:signaling, GOC:TermGenie] +synonym: "activation of receptor binding" NARROW [GOC:TermGenie] +synonym: "up regulation of receptor binding" EXACT [GOC:TermGenie] +synonym: "upregulation of receptor binding" EXACT [GOC:TermGenie] +is_a: GO:0032092 ! positive regulation of protein binding +is_a: GO:1900120 ! regulation of receptor binding +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0005102 ! signaling receptor binding +relationship: positively_regulates GO:0005102 ! signaling receptor binding +created_by: bf +creation_date: 2012-02-22T11:41:00Z + +[Term] +id: GO:1902531 +name: regulation of intracellular signal transduction +namespace: biological_process +alt_id: GO:0010627 +def: "Any process that modulates the frequency, rate or extent of intracellular signal transduction." [GOC:dph, GOC:signaling, GOC:tb, GOC:TermGenie] +synonym: "regulation of intracellular protein kinase cascade" NARROW [] +synonym: "regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "regulation of intracellular signaling cascade" EXACT [GOC:TermGenie] +synonym: "regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +is_a: GO:0009966 ! regulation of signal transduction +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0035556 ! intracellular signal transduction +relationship: regulates GO:0035556 ! intracellular signal transduction +created_by: bf +creation_date: 2013-12-02T11:32:52Z + +[Term] +id: GO:1902532 +name: negative regulation of intracellular signal transduction +namespace: biological_process +alt_id: GO:0010741 +def: "Any process that stops, prevents or reduces the frequency, rate or extent of intracellular signal transduction." [GOC:dph, GOC:signaling, GOC:tb, GOC:TermGenie] +synonym: "down regulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "down regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "down regulation of intracellular signaling cascade" NARROW [GOC:TermGenie] +synonym: "down regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "down regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "down regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "down regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "down-regulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "down-regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "down-regulation of intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "down-regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "down-regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "down-regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "down-regulation of signal transmission via intracellular cascade" RELATED [GOC:TermGenie] +synonym: "downregulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "downregulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "downregulation of intracellular signaling cascade" NARROW [GOC:TermGenie] +synonym: "downregulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "downregulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "downregulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "downregulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "inhibition of intracellular signal transduction" NARROW [GOC:TermGenie] +synonym: "inhibition of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "inhibition of intracellular signaling cascade" NARROW [GOC:TermGenie] +synonym: "inhibition of intracellular signaling chain" NARROW [GOC:TermGenie] +synonym: "inhibition of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "inhibition of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "inhibition of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "negative regulation of intracellular protein kinase cascade" EXACT [] +synonym: "negative regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "negative regulation of intracellular signaling cascade" EXACT [GOC:TermGenie] +synonym: "negative regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "negative regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "negative regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "negative regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +is_a: GO:0009968 ! negative regulation of signal transduction +is_a: GO:1902531 ! regulation of intracellular signal transduction +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0035556 ! intracellular signal transduction +relationship: negatively_regulates GO:0035556 ! intracellular signal transduction +created_by: bf +creation_date: 2013-12-02T11:33:01Z + +[Term] +id: GO:1902533 +name: positive regulation of intracellular signal transduction +namespace: biological_process +alt_id: GO:0010740 +def: "Any process that activates or increases the frequency, rate or extent of intracellular signal transduction." [GOC:BHF, GOC:dph, GOC:signaling, GOC:tb, GOC:TermGenie] +synonym: "activation of intracellular signal transduction" NARROW [GOC:TermGenie] +synonym: "activation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "activation of intracellular signaling cascade" NARROW [GOC:TermGenie] +synonym: "activation of intracellular signaling chain" NARROW [GOC:TermGenie] +synonym: "activation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "activation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "activation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "positive regulation of intracellular protein kinase cascade" NARROW [] +synonym: "positive regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "positive regulation of intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "positive regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "positive regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "positive regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "positive regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "up regulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "up regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "up regulation of intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "up regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "up regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "up regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "up regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "up-regulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "up-regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "up-regulation of intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "up-regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "up-regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "up-regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "up-regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "upregulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "upregulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "upregulation of intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "upregulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "upregulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "upregulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "upregulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +is_a: GO:0009967 ! positive regulation of signal transduction +is_a: GO:1902531 ! regulation of intracellular signal transduction +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0035556 ! intracellular signal transduction +relationship: positively_regulates GO:0035556 ! intracellular signal transduction +created_by: bf +creation_date: 2013-12-02T11:33:10Z + +[Typedef] +id: has_part +name: has part +namespace: external +xref: BFO:0000051 +is_transitive: true + +[Typedef] +id: negatively_regulates +name: negatively regulates +namespace: external +xref: RO:0002212 +is_a: regulates ! regulates + +[Typedef] +id: occurs_in +name: occurs in +namespace: external +xref: BFO:0000066 +transitive_over: part_of ! part of + +[Typedef] +id: part_of +name: part of +namespace: external +xref: BFO:0000050 +is_transitive: true +inverse_of: has_part ! has part + +[Typedef] +id: positively_regulates +name: positively regulates +namespace: external +xref: RO:0002213 +holds_over_chain: negatively_regulates negatively_regulates +is_a: regulates ! regulates + +[Typedef] +id: regulates +name: regulates +namespace: external +xref: RO:0002211 +is_transitive: true diff --git a/imports/go_import.owl b/imports/go_import.owl index 1491520e..e81bfa1c 100644 --- a/imports/go_import.owl +++ b/imports/go_import.owl @@ -1,77 +1,2697 @@ - + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" + xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> + + + + + + + + + + + + + + + definition + + + + + + + + + + + + + + + + + + + + term replaced by + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + subset_property + + + + + + + + consider + + + + + + + + + + + + + + + + + + + + + + + + + + has_alternative_id + + + + + + + + has_broad_synonym + + + + + + + + database_cross_reference + + + + + + + + has_exact_synonym + + + + + + + + has_narrow_synonym + + + + + + + + has_obo_format_version + + + + + + + + has_obo_namespace + + + + + + + + has_related_synonym + + + + + + + + + + + + + + in_subset + + + + + + + + + + + + + + + + + + + + shorthand + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + BFO:0000050 + external + part_of + part_of + part of + + + + + + + + + BFO:0000051 + external + has_part + has_part + has part + + + + + + + + + + + + BFO:0000066 + external + occurs_in + occurs_in + occurs in + + + + + + + + + RO:0002211 + external + regulates + regulates + regulates + + + + + + + + + RO:0002212 + external + negatively_regulates + negatively_regulates + negatively regulates + + + + + + + + + + + + + RO:0002213 + external + positively_regulates + positively_regulates + positively regulates + + + + + + + + + + + + + A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process. + GO:0005554 + molecular function + molecular_function + GO:0003674 + + + + + + + + + Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex. + molecular_function + + + + + A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process. + GOC:pdt + + + + + + + + + Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. + Wikipedia:Enzyme + enzyme activity + molecular_function + GO:0003824 + + + + + + + catalytic activity + + + + + Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. + GOC:vw + ISBN:0198506732 + + + + + enzyme activity + GOC:dph + GOC:tb + + + + + + + + + + true + + + + + + + + + Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. + receptor binding + Wikipedia:Ligand_(biochemistry) + receptor ligand + molecular_function + receptor-associated protein activity + GO:0005102 + + + + + + Where appropriate, also consider annotating to 'receptor agonist activity ; GO:0048018'. + signaling receptor binding + + + + + Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. + GOC:bf + GOC:ceb + ISBN:0198506732 + + + + + + + + + The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule. + Wikipedia:Binding_(molecular) + ligand + molecular_function + GO:0005488 + + + + Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children. + binding + + + + + The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule. + GOC:ceb + GOC:mah + ISBN:0198506732 + + + + + + + + + Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). + GO:0001948 + GO:0045308 + MIPS_funcat:16.01 + MIPS_funcat:18.01.07 + Reactome:R-HSA-170835 + Reactome:R-HSA-170846 + protein amino acid binding + glycoprotein binding + molecular_function + GO:0005515 + + + + + + + protein binding + + + + + Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). + GOC:go_curators + + + + + Reactome:R-HSA-170835 + An anchoring protein, ZFYVE9 (SARA), recruits SMAD2/3 + + + + + Reactome:R-HSA-170846 + TGFBR2 recruits TGFBR1 + + + + + + + + A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome). + GO:0008372 + NIF_Subcellular:sao1337158144 + cell or subcellular entity + cellular component + cellular_component + subcellular entity + GO:0005575 + + + + + + + + + Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. + cellular_component + + + + + A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome). + GOC:pdt + NIF_Subcellular:sao1337158144 + + + + + subcellular entity + NIF_Subcellular:nlx_subcell_100315 + + + + + + + + + The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. + Wikipedia:Intracellular + internal to cell + protoplasm + cellular_component + nucleocytoplasm + protoplast + GO:0005622 + + + + + + intracellular + + + + + The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. + ISBN:0198506732 + + + + + nucleocytoplasm + GOC:mah + + + + + protoplast + GOC:mah + + + + + + + + + The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. + cell and encapsulating structures + NIF_Subcellular:sao1813327414 + Wikipedia:Cell_(biology) + cellular_component + GO:0005623 + + + + cell + + + + + The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. + GOC:go_curators + + + + + + + + + A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. + MIPS_funcat:70.10 + NIF_Subcellular:sao1702920020 + Wikipedia:Cell_nucleus + cell nucleus + horsetail nucleus + cellular_component + GO:0005634 + + + + + + + + + + + + nucleus + + + + + A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. + GOC:go_curators + + + + + horsetail nucleus + GOC:al + GOC:mah + GOC:vw + PMID:15030757 + + + + + + + + + + + + + + + The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. + GO:0005904 + juxtamembrane + NIF_Subcellular:sao1663586795 + Wikipedia:Cell_membrane + cell membrane + cellular membrane + cytoplasmic membrane + plasmalemma + bacterial inner membrane + inner endospore membrane + plasma membrane lipid bilayer + cellular_component + GO:0005886 + + + + + + + + + + plasma membrane + + + + + The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. + ISBN:0716731363 + + + + + cellular membrane + NIF_Subcellular:sao6433132645 + + + + + plasma membrane lipid bilayer + GOC:mah + + + + + + + + + + + + + + + + A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body. + GO:0072372 + FMA:67181 + NIF_Subcellular:sao787716553 + Wikipedia:Cilium + eukaryotic flagellum + microtubule-based flagellum + primary cilium + cellular_component + flagellum + GO:0005929 + + + + Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms. + cilium + + + + + A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body. + GOC:cilia + GOC:curators + GOC:kmv + GOC:vw + ISBN:0198547684 + PMID:16824949 + PMID:17009929 + PMID:20144998 + + + + + + + + + The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4). + phosphorus metabolism + biological_process + GO:0006793 + + phosphorus metabolic process + + + + + The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4). + GOC:ai + + + + + + + + + The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid. + MIPS_funcat:01.04 + phosphate metabolism + biological_process + phosphate metabolic process + GO:0006796 + phosphate-containing compound metabolic process + + + + + The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid. + GOC:ai + + + + + + + + + Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + Wikipedia:Cell_signaling + biological_process + GO:0007154 + + + cell communication + + + + + Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. + GO:0023033 + MIPS_funcat:30 + Wikipedia:Signal_transduction + signaling cascade + signalling cascade + biological_process + signaling pathway + signalling pathway + GO:0007165 + + + + + + + Note that signal transduction is defined broadly to include a ligand interacting with a receptor, downstream signaling steps and a response being triggered. A change in form of the signal in every step is not necessary. Note that in many cases the end of this process is regulation of the initiation of transcription. Note that specific transcription factors may be annotated to this term, but core/general transcription machinery such as RNA polymerase should not. + signal transduction + + + + + The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. + GOC:go_curators + GOC:mtg_signaling_feb11 + + + + + signalling pathway + GOC:mah + + + + + + + + A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. + janelomax + 2012-09-19T15:05:24Z + GO:0000004 + GO:0007582 + GO:0044699 + Wikipedia:Biological_process + biological process + physiological process + biological_process + single organism process + single-organism process + GO:0008150 + + + + + + + + + + Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. + biological_process + + + + + A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. + GOC:pdt + + + + + + + + + The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. + janelomax + 2012-10-17T15:46:40Z + GO:0044236 + GO:0044710 + MIPS_funcat:01 + Wikipedia:Metabolism + metabolism + metabolic process resulting in cell growth + metabolism resulting in cell growth + multicellular organism metabolic process + biological_process + single-organism metabolic process + GO:0008152 + + + + + + Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions. + metabolic process + + + + + The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. + GOC:go_curators + ISBN:0198547684 + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GO:0044252 + down regulation of metabolic process + down-regulation of metabolic process + downregulation of metabolic process + negative regulation of metabolism + negative regulation of organismal metabolism + inhibition of metabolic process + inhibition of organismal metabolic process + negative regulation of multicellular organismal metabolic process + biological_process + GO:0009892 + negative regulation of metabolic process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GO:0044253 + positive regulation of metabolism + up regulation of metabolic process + up-regulation of metabolic process + upregulation of metabolic process + activation of metabolic process + positive regulation of multicellular organismal metabolic process + positive regulation of organismal metabolism + stimulation of metabolic process + stimulation of organismal metabolic process + up-regulation of organismal metabolic process + biological_process + GO:0009893 + positive regulation of metabolic process + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of signal transduction. + GO:0035466 + biological_process + regulation of signaling pathway + regulation of signalling pathway + GO:0009966 + regulation of signal transduction + + + + + Any process that modulates the frequency, rate or extent of signal transduction. + GOC:sm + + + + + regulation of signalling pathway + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of signal transduction. + GO:0035468 + up regulation of signal transduction + up-regulation of signal transduction + upregulation of signal transduction + activation of signal transduction + stimulation of signal transduction + biological_process + positive regulation of signaling pathway + positive regulation of signalling pathway + GO:0009967 + positive regulation of signal transduction + + + + + Any process that activates or increases the frequency, rate or extent of signal transduction. + GOC:sm + + + + + positive regulation of signalling pathway + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction. + GO:0035467 + down regulation of signal transduction + down-regulation of signal transduction + downregulation of signal transduction + inhibition of signal transduction + biological_process + negative regulation of signaling pathway + negative regulation of signalling pathway + GO:0009968 + negative regulation of signal transduction + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction. + GOC:sm + + + + + negative regulation of signalling pathway + GOC:mah + + + + + + + + + Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + janelomax + 2012-12-11T16:56:55Z + GO:0008151 + GO:0044763 + GO:0050875 + cell physiology + cellular physiological process + cell growth and/or maintenance + biological_process + single-organism cellular process + GO:0009987 + + cellular process + + + + + Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GOC:go_curators + GOC:isa_complete + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + biological_process + GO:0010562 + positive regulation of phosphorus metabolic process + + + + + Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + GOC:dph + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + biological_process + GO:0010563 + negative regulation of phosphorus metabolic process + + + + + Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + GOC:dph + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + biological_process + GO:0010646 + regulation of cell communication + + + + + Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + GOC:dph + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + biological_process + GO:0010647 + positive regulation of cell communication + + + + + Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + GOC:dph + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + biological_process + GO:0010648 + negative regulation of cell communication + + + + + Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + GOC:dph + GOC:tb + + + + + + + + + A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. + Wikipedia:Biological_membrane + cellular_component + GO:0016020 + + + + + + + + + membrane + + + + + A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. + GOC:dos + GOC:mah + ISBN:0815316194 + + + + + + + + + + + + + + + Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + Reactome:R-HSA-6788855 + Reactome:R-HSA-6788867 + phosphokinase activity + molecular_function + GO:0016301 + + + + + + Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term. + kinase activity + + + + + Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + ISBN:0198506732 + + + + + Reactome:R-HSA-6788855 + FN3KRP phosphorylates PsiAm, RibAm + + + + + Reactome:R-HSA-6788867 + FN3K phosphorylates ketosamines + + + + + + + + + The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. + Wikipedia:Phosphorylation + biological_process + GO:0016310 + + + phosphorylation + + + + + The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. + ISBN:0198506732 + + + + + + + + + Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. + EC:2 + Reactome:R-HSA-1483089 + Reactome:R-HSA-1483186 + Reactome:R-HSA-5668414 + Reactome:R-HSA-6787403 + Reactome:R-HSA-8868783 + molecular_function + GO:0016740 + + + + + + + + + transferase activity + + + + + Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. + ISBN:0198506732 + + + + + Reactome:R-HSA-1483089 + PE is converted to PS by PTDSS2 + + + + + Reactome:R-HSA-1483186 + PC is converted to PS by PTDSS1 + + + + + Reactome:R-HSA-5668414 + TRAF2 ubiquitinates cIAP1,2 in cIAP1,2:TRAF1:TRAF2:TRAF3:NIK + + + + + Reactome:R-HSA-6787403 + GTPBP3 and MTO1 transform uridine-34 yielding 5-taurinomethyluridine-34 in tRNA + + + + + Reactome:R-HSA-8868783 + TSR3 transfers aminocarboxypropyl group from S-adenosylmethionine to N(1)-methylpseudouridine-1248 of 18SE rRNA yielding N(1)-methyl-N(3)-aminocarboxypropylpseudouridine-1248 + + + + + + + + + Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). + EC:2.7 + molecular_function + GO:0016772 + + Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides. + transferase activity, transferring phosphorus-containing groups + + + + + Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). + GOC:jl + ISBN:0198506732 + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + regulation of phosphate metabolism + biological_process + GO:0019220 + regulation of phosphate metabolic process + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GO:0044246 + regulation of metabolism + regulation of multicellular organismal metabolic process + regulation of organismal metabolic process + biological_process + GO:0019222 + + regulation of metabolic process + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GOC:go_curators + + + + + regulation of organismal metabolic process + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a signaling process. + 2010-02-16T09:30:50Z + biological_process + regulation of signaling process + regulation of signalling process + GO:0023051 + regulation of signaling + + + + + Any process that modulates the frequency, rate or extent of a signaling process. + GOC:mtg_signal + + + + + regulation of signaling process + GOC:bf + + + + + regulation of signalling process + GOC:mah + + + + + + + + + The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered. + janelomax + 2010-02-16T09:30:50Z + GO:0023046 + GO:0044700 + biological signaling + signaling process + signalling + biological_process + signalling process + single organism signaling + GO:0023052 + + + + + + Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change. + signaling + + + + + The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered. + GOC:mtg_signal + GOC:mtg_signaling_feb11 + GOC:signaling + + + + + signalling process + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates, maintains or increases the frequency, rate or extent of a signaling process. + 2010-02-16T09:30:50Z + positive regulation of signalling process + biological_process + positive regulation of signaling process + GO:0023056 + positive regulation of signaling + + + + + Any process that activates, maintains or increases the frequency, rate or extent of a signaling process. + GOC:mtg_signal + + + + + positive regulation of signalling process + GOC:mah + + + + + positive regulation of signaling process + GOC:bf + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process. + 2010-02-16T09:30:50Z + biological_process + negative regulation of signaling process + negative regulation of signalling process + GO:0023057 + negative regulation of signaling + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process. + GOC:mtg_signal + + + + + negative regulation of signaling process + GOC:bf + + + + + negative regulation of signalling process + GOC:mah + + + + + + + + + The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed. + MIPS_funcat:18.02.07 + molecular_function + GO:0030545 + receptor regulator activity + + + + + The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed. + GOC:ceb + + + + + + + + + The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased. + receptor activator activity + molecular_function + GO:0030546 + signaling receptor activator activity + + + + + The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased. + GOC:ceb + + + + + + + + + A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules. + intraflagellar transport complex + intraflagellar transport particle + cellular_component + IFT complex + GO:0030990 + + Note that we deem cilia and microtubule-based flagella to be equivalent. + intraciliary transport particle + + + + + A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules. + GOC:cilia + GOC:kmv + PMID:14570576 + PMID:22118932 + PMID:23945166 + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + regulation of cellular metabolism + biological_process + GO:0031323 + regulation of cellular metabolic process + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + down regulation of cellular metabolic process + down-regulation of cellular metabolic process + downregulation of cellular metabolic process + negative regulation of cellular metabolism + inhibition of cellular metabolic process + biological_process + GO:0031324 + negative regulation of cellular metabolic process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + positive regulation of cellular metabolism + up regulation of cellular metabolic process + up-regulation of cellular metabolic process + upregulation of cellular metabolic process + activation of cellular metabolic process + stimulation of cellular metabolic process + biological_process + GO:0031325 + positive regulation of cellular metabolic process + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + GOC:mah + - + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding. + down regulation of protein binding + down-regulation of protein binding + downregulation of protein binding + inhibition of protein binding + biological_process + GO:0032091 + negative regulation of protein binding + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding. + GOC:mah + - + - - cellular_component + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of protein binding. + up regulation of protein binding + up-regulation of protein binding + upregulation of protein binding + activation of protein binding + stimulation of protein binding + biological_process + GO:0032092 + positive regulation of protein binding + + + + Any process that activates or increases the frequency, rate or extent of protein binding. + GOC:mah + - + - + - cell + A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together. + GO:0043234 + macromolecular complex + macromolecule complex + protein containing complex + protein complex + protein-protein complex + cellular_component + GO:0032991 + + + + + + A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole. + protein-containing complex + + + + A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together. + GOC:dos + GOC:mah + - + - - - nucleus + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + down regulation of kinase activity + down-regulation of kinase activity + downregulation of kinase activity + inhibition of kinase activity + kinase inhibitor + biological_process + GO:0033673 + negative regulation of kinase activity + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + GOC:mah + - + - - - - cilium + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + up regulation of kinase activity + up-regulation of kinase activity + upregulation of kinase activity + kinase activator + stimulation of kinase activity + biological_process + GO:0033674 + positive regulation of kinase activity + + + + + Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. + rfoulger + 2010-05-14T01:14:37Z + GO:0007242 + GO:0007243 + GO:0023013 + GO:0023034 + intracellular signaling chain + intracellular protein kinase cascade + intracellular signal transduction pathway + protein kinase cascade + signal transmission via intracellular cascade + biological_process + intracellular signaling cascade + intracellular signaling pathway + signal transduction via intracellular signaling cascade + GO:0035556 + intracellular signal transduction + + + + + The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. + GOC:bf + GOC:jl + GOC:signaling + ISBN:3527303782 + + + + + intracellular signaling chain + ISBN:3527303782 + + + + + intracellular protein kinase cascade + GOC:signaling + + + + + protein kinase cascade + GOC:signaling + + + + + intracellular signaling cascade + GOC:signaling + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule. + biological_process + GO:0042325 + regulation of phosphorylation + + + + + Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule. + GOC:jl + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule. + down regulation of phosphorylation + down-regulation of phosphorylation + downregulation of phosphorylation + inhibition of phosphorylation + biological_process + GO:0042326 + negative regulation of phosphorylation + + + + + Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule. + GOC:jl + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule. + up regulation of phosphorylation + up-regulation of phosphorylation + upregulation of phosphorylation + activation of phosphorylation + stimulation of phosphorylation + biological_process + GO:0042327 + positive regulation of phosphorylation + + + + Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule. + GOC:jl + - - cell projection + + A prolongation or process extending from a cell, e.g. a flagellum or axon. + cell process + cellular process + cellular projection + cellular_component + GO:0042995 + + + + + cell projection + + + + + A prolongation or process extending from a cell, e.g. a flagellum or axon. + GOC:jl + http://www.cogsci.princeton.edu/~wn/ + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the activity of an enzyme. + GO:0048554 + MIPS_funcat:18.02.01.01 + positive regulation of enzyme activity + up regulation of enzyme activity + up-regulation of enzyme activity + upregulation of enzyme activity + activation of enzyme activity + activation of metalloenzyme activity + positive regulation of metalloenzyme activity + stimulation of enzyme activity + stimulation of metalloenzyme activity + up regulation of metalloenzyme activity + up-regulation of metalloenzyme activity + upregulation of metalloenzyme activity + biological_process + GO:0043085 + + positive regulation of catalytic activity + + + + + Any process that activates or increases the activity of an enzyme. + GOC:ebc + GOC:jl + GOC:tb + GOC:vw + + + + + positive regulation of enzyme activity + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops or reduces the activity of an enzyme. + GO:0048553 + down regulation of enzyme activity + down-regulation of enzyme activity + down-regulation of metalloenzyme activity + downregulation of enzyme activity + negative regulation of enzyme activity + down regulation of metalloenzyme activity + downregulation of metalloenzyme activity + inhibition of enzyme activity + inhibition of metalloenzyme activity + negative regulation of metalloenzyme activity + biological_process + GO:0043086 + negative regulation of catalytic activity + + + + Any process that stops or reduces the activity of an enzyme. + GOC:ebc + GOC:jl + GOC:tb + GOC:vw + + + + + negative regulation of enzyme activity + GOC:tb + - - organelle + + Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane. + NIF_Subcellular:sao1539965131 + Wikipedia:Organelle + cellular_component + GO:0043226 + + + + organelle + + + + Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane. + GOC:go_curators + @@ -79,18 +2699,55 @@ - membrane-bounded organelle + Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. + NIF_Subcellular:sao414196390 + membrane-enclosed organelle + cellular_component + GO:0043227 + membrane-bounded organelle + + + + Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. + GOC:go_curators + + + + + + + + + + + + - - intracellular organelle + + + + + + + Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. + cellular_component + GO:0043229 + + intracellular organelle + + + + Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. + GOC:go_curators + @@ -99,38 +2756,2230 @@ - intracellular membrane-bounded organelle + Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. + intracellular membrane-enclosed organelle + cellular_component + GO:0043231 + + intracellular membrane-bounded organelle + + + + + Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of protein binding. + biological_process + GO:0043393 + regulation of protein binding + + + + + Any process that modulates the frequency, rate or extent of protein binding. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + biological_process + GO:0043549 + regulation of kinase activity + + + + + Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + GOC:bf + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + jane + 2009-04-21T04:07:27Z + biological_process + GO:0044092 + negative regulation of molecular function + + + + + Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + GO:jl + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + jane + 2009-04-21T04:11:06Z + biological_process + GO:0044093 + positive regulation of molecular function + + + + + Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + GO:jl + + + + + + + + + + The chemical reactions and pathways by which individual cells transform chemical substances. + cellular metabolism + biological_process + intermediary metabolism + GO:0044237 + cellular metabolic process + + + + The chemical reactions and pathways by which individual cells transform chemical substances. + GOC:go_curators + + + + + intermediary metabolism + GOC:mah + - - intracellular part + OBSOLETE. Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. + GO:0005622 + cellular_component + GO:0044424 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + obsolete intracellular part + true + + + + OBSOLETE. Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. + GOC:jl + + OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms. + CL:0000000 + NIF_Subcellular:sao628508602 + cellular subcomponent + cellular_component + protoplast + GO:0044464 + + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + obsolete cell part + true + + + + + OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms. + GOC:jl + + + + + cellular subcomponent + NIF_Subcellular:sao628508602 + + + + + protoplast + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + down regulation of phosphate metabolic process + down-regulation of phosphate metabolic process + downregulation of phosphate metabolic process + negative regulation of phosphate metabolism + inhibition of phosphate metabolic process + biological_process + GO:0045936 + negative regulation of phosphate metabolic process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + positive regulation of phosphate metabolism + up regulation of phosphate metabolic process + up-regulation of phosphate metabolic process + upregulation of phosphate metabolic process + activation of phosphate metabolic process + stimulation of phosphate metabolic process + biological_process + GO:0045937 + positive regulation of phosphate metabolic process + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + GOC:go_curators + + + + + + + + + + + + + + + + The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands). + midori + 2010-09-13T04:51:59Z + GO:0071884 + receptor agonist activity + signaling molecule + signaling receptor ligand activity + vitamin D receptor activator activity + molecular_function + GO:0048018 + + Definition discussed in https://github.com/geneontology/go-ontology/issues/14220 + receptor ligand activity + + + + + The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands). + GOC:kv + GOC:molecular_function_refactoring + GOC:pdt + + + + + receptor agonist activity + GOC:molecular_function_refactoring + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GO:0043119 + positive regulation of physiological process + up regulation of biological process + up-regulation of biological process + upregulation of biological process + activation of biological process + stimulation of biological process + biological_process + GO:0048518 + + positive regulation of biological process + + + + + Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GO:0043118 + down regulation of biological process + down-regulation of biological process + downregulation of biological process + negative regulation of physiological process + inhibition of biological process + biological_process + GO:0048519 + + negative regulation of biological process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GO:0051242 + positive regulation of cellular physiological process + up regulation of cellular process + up-regulation of cellular process + upregulation of cellular process + activation of cellular process + stimulation of cellular process + biological_process + GO:0048522 + positive regulation of cellular process + + + + + Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GO:0051243 + down regulation of cellular process + down-regulation of cellular process + downregulation of cellular process + negative regulation of cellular physiological process + inhibition of cellular process + biological_process + GO:0048523 + negative regulation of cellular process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + biological_process + GO:0048583 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + regulation of response to stimulus + + + + + Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + up regulation of response to stimulus + up-regulation of response to stimulus + upregulation of response to stimulus + activation of response to stimulus + stimulation of response to stimulus + biological_process + GO:0048584 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + positive regulation of response to stimulus + + + + + Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + down regulation of response to stimulus + down-regulation of response to stimulus + downregulation of response to stimulus + inhibition of response to stimulus + biological_process + GO:0048585 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + negative regulation of response to stimulus + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GO:0050791 + regulation of physiological process + biological_process + GO:0050789 + + + + + regulation of biological process + + + + + Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GOC:ai + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the activity of an enzyme. + GO:0048552 + MIPS_funcat:18.02.01 + regulation of enzyme activity + regulation of metalloenzyme activity + biological_process + GO:0050790 + + regulation of catalytic activity + + + + + Any process that modulates the activity of an enzyme. + GOC:ai + GOC:ebc + GOC:vw + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GO:0051244 + regulation of cellular physiological process + biological_process + GO:0050794 + regulation of cellular process + + + + + Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GOC:go_curators + + + + + + + + + Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. + GO:0051869 + MIPS_funcat:34.11 + physiological response to stimulus + biological_process + GO:0050896 + + + + + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + response to stimulus + + + + + Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. + GOC:ai + GOC:bf + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + biological_process + GO:0051098 + regulation of binding + + + + + Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + up regulation of binding + up-regulation of binding + upregulation of binding + activation of binding + stimulation of binding + biological_process + GO:0051099 + positive regulation of binding + + + + + Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + down regulation of binding + down-regulation of binding + downregulation of binding + inhibition of binding + biological_process + GO:0051100 + negative regulation of binding + + + + + Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + regulation of phosphorus metabolism + biological_process + GO:0051174 + regulation of phosphorus metabolic process + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. + transferase regulator + biological_process + GO:0051338 + + This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. + regulation of transferase activity + + + + + Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. + EC:2.-.-.- + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. + transferase activator + up regulation of transferase activity + up-regulation of transferase activity + upregulation of transferase activity + activation of transferase activity + stimulation of transferase activity + biological_process + GO:0051347 + + This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. + positive regulation of transferase activity + + + + + Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. + down regulation of transferase activity + down-regulation of transferase activity + downregulation of transferase activity + transferase inhibitor + inhibition of transferase activity + biological_process + GO:0051348 + + This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. + negative regulation of transferase activity + + + + + Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. + GOC:ai + + + + + + + + + + Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell. + biological_process + GO:0051716 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + cellular response to stimulus + + + + + Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell. + GOC:bf + GOC:jl + + + + + + + + + Any process that modulates a measurable attribute of any biological process, quality or function. + regulation + biological_process + GO:0065007 + + + biological regulation + + + + + Any process that modulates a measurable attribute of any biological process, quality or function. + GOC:dph + GOC:isa_complete + GOC:mah + GOC:pr + GOC:vw + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + regulation of a molecular function + biological_process + GO:0065009 + + + + regulation of molecular function + + + + + Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + GOC:isa_complete + + + + + + + + + The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures. + midori + 2010-10-04T01:51:47Z + cellular_component + GO:0071944 + + cell periphery + + + + + The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + A membrane that is a (regional) part of the plasma membrane. + davidos + 2014-03-06T11:55:32Z + region of plasma membrane + cellular_component + GO:0098590 + + Note that this term should not be used for direct manual annotation as it should always be possible to choose a more specific subclass. + plasma membrane region + + + + + A membrane that is a (regional) part of the plasma membrane. + GOC:dos + + + + + + + + + + + + + + + A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators. + molecular_function + GO:0098772 + + molecular function regulator + + + + + A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators. + GOC:dos + GOC:pt + + + + + + + + + + + + + + + + + + + + + + + + + + Any protein complex that is part of a membrane. + cellular_component + GO:0098796 + + membrane protein complex + + + + + Any protein complex that is part of a membrane. + GOC:dos + + + + + + + + + + + + + + + + + + + + + + + + + + Any protein complex that is part of the plasma membrane. + cellular_component + GO:0098797 + plasma membrane protein complex + + + + + Any protein complex that is part of the plasma membrane. + GOC:dos + + + + + + + - cell part + A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. + kmv + 2019-08-12T18:01:37Z + cellular_component + GO:0110165 + cellular anatomical entity + + + + A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. + GOC:kmv + + + + + + + + + + + + - plasma membrane bounded cell projection + + + + + + + A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon. + kchris + 2017-03-21T17:26:07Z + cellular_component + GO:0120025 + plasma membrane bounded cell projection + + + + + A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon. + GOC:krc + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor. + bf + 2012-02-22T11:40:53Z + regulation of receptor ligand + biological_process + GO:1900120 + regulation of receptor binding + + + + + Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor. + GOC:TermGenie + GOC:signaling + + + + + regulation of receptor ligand + GOC:TermGenie + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor. + bf + 2012-02-22T11:40:57Z + down regulation of receptor binding + down-regulation of receptor binding + downregulation of receptor binding + inhibition of receptor binding + inhibition of receptor ligand + biological_process + down regulation of receptor-associated protein activity + GO:1900121 + negative regulation of receptor binding + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor. + GOC:TermGenie + GOC:signaling + + + + + down regulation of receptor binding + GOC:TermGenie + + + + + down-regulation of receptor binding + GOC:TermGenie + + + + + downregulation of receptor binding + GOC:TermGenie + + + + + inhibition of receptor binding + GOC:TermGenie + + + + + inhibition of receptor ligand + GOC:TermGenie + + + + + down regulation of receptor-associated protein activity + GOC:TermGenie + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor. + bf + 2012-02-22T11:41:00Z + up regulation of receptor binding + upregulation of receptor binding + activation of receptor binding + biological_process + GO:1900122 + positive regulation of receptor binding + + + + + Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor. + GOC:TermGenie + GOC:signaling + + + + + up regulation of receptor binding + GOC:TermGenie + + + + + upregulation of receptor binding + GOC:TermGenie + + + + + activation of receptor binding + GOC:TermGenie + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of intracellular signal transduction. + bf + 2013-12-02T11:32:52Z + GO:0010627 + regulation of intracellular signaling cascade + regulation of intracellular signaling chain + regulation of intracellular protein kinase cascade + regulation of intracellular signal transduction pathway + regulation of signal transmission via intracellular cascade + biological_process + regulation of intracellular signaling pathway + regulation of signal transduction via intracellular signaling cascade + GO:1902531 + regulation of intracellular signal transduction + + + + + Any process that modulates the frequency, rate or extent of intracellular signal transduction. + GOC:TermGenie + GOC:dph + GOC:signaling + GOC:tb + + + + + regulation of intracellular signaling cascade + GOC:TermGenie + + + + + regulation of intracellular signaling chain + GOC:TermGenie + + + + + regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + regulation of intracellular signaling pathway + GOC:TermGenie + + + + + regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of intracellular signal transduction. + bf + 2013-12-02T11:33:01Z + GO:0010741 + down regulation of intracellular signal transduction + down regulation of intracellular signaling chain + down-regulation of intracellular signal transduction + down-regulation of intracellular signaling chain + downregulation of intracellular signal transduction + downregulation of intracellular signaling chain + negative regulation of intracellular protein kinase cascade + negative regulation of intracellular signaling cascade + negative regulation of intracellular signaling chain + down regulation of intracellular signal transduction pathway + down regulation of intracellular signaling cascade + down regulation of signal transmission via intracellular cascade + down-regulation of intracellular signal transduction pathway + downregulation of intracellular signal transduction pathway + downregulation of intracellular signaling cascade + downregulation of signal transmission via intracellular cascade + inhibition of intracellular signal transduction + inhibition of intracellular signal transduction pathway + inhibition of intracellular signaling cascade + inhibition of intracellular signaling chain + inhibition of signal transmission via intracellular cascade + negative regulation of intracellular signal transduction pathway + negative regulation of signal transmission via intracellular cascade + biological_process + down regulation of intracellular signaling pathway + down regulation of signal transduction via intracellular signaling cascade + down-regulation of intracellular signaling cascade + down-regulation of intracellular signaling pathway + down-regulation of signal transduction via intracellular signaling cascade + down-regulation of signal transmission via intracellular cascade + downregulation of intracellular signaling pathway + downregulation of signal transduction via intracellular signaling cascade + inhibition of intracellular signaling pathway + inhibition of signal transduction via intracellular signaling cascade + negative regulation of intracellular signaling pathway + negative regulation of signal transduction via intracellular signaling cascade + GO:1902532 + negative regulation of intracellular signal transduction + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of intracellular signal transduction. + GOC:TermGenie + GOC:dph + GOC:signaling + GOC:tb + + + + + down regulation of intracellular signal transduction + GOC:TermGenie + + + + + down regulation of intracellular signaling chain + GOC:TermGenie + + + + + down-regulation of intracellular signal transduction + GOC:TermGenie + + + + + down-regulation of intracellular signaling chain + GOC:TermGenie + + + + + downregulation of intracellular signal transduction + GOC:TermGenie + + + + + downregulation of intracellular signaling chain + GOC:TermGenie + + + + + negative regulation of intracellular signaling cascade + GOC:TermGenie + + + + + negative regulation of intracellular signaling chain + GOC:TermGenie + + + + + down regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + down regulation of intracellular signaling cascade + GOC:TermGenie + + + + + down regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + down-regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + downregulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + downregulation of intracellular signaling cascade + GOC:TermGenie + + + + + downregulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + inhibition of intracellular signal transduction + GOC:TermGenie + + + + + inhibition of intracellular signal transduction pathway + GOC:TermGenie + + + + + inhibition of intracellular signaling cascade + GOC:TermGenie + + + + + inhibition of intracellular signaling chain + GOC:TermGenie + + + + + inhibition of signal transmission via intracellular cascade + GOC:TermGenie + + + + + negative regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + negative regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + down regulation of intracellular signaling pathway + GOC:TermGenie + + + + + down regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + down-regulation of intracellular signaling cascade + GOC:TermGenie + + + + + down-regulation of intracellular signaling pathway + GOC:TermGenie + + + + + down-regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + down-regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + downregulation of intracellular signaling pathway + GOC:TermGenie + + + + + downregulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + inhibition of intracellular signaling pathway + GOC:TermGenie + + + + + inhibition of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + negative regulation of intracellular signaling pathway + GOC:TermGenie + + + + + negative regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of intracellular signal transduction. + bf + 2013-12-02T11:33:10Z + GO:0010740 + positive regulation of intracellular signaling chain + up regulation of intracellular signal transduction + up regulation of intracellular signaling chain + up-regulation of intracellular signal transduction + up-regulation of intracellular signaling chain + upregulation of intracellular signal transduction + upregulation of intracellular signaling chain + activation of intracellular signal transduction + activation of intracellular signal transduction pathway + activation of intracellular signaling cascade + activation of intracellular signaling chain + activation of signal transmission via intracellular cascade + positive regulation of intracellular protein kinase cascade + positive regulation of intracellular signal transduction pathway + positive regulation of signal transmission via intracellular cascade + up regulation of intracellular signal transduction pathway + up regulation of signal transmission via intracellular cascade + up-regulation of intracellular signal transduction pathway + up-regulation of signal transmission via intracellular cascade + upregulation of intracellular signal transduction pathway + upregulation of signal transmission via intracellular cascade + biological_process + activation of intracellular signaling pathway + activation of signal transduction via intracellular signaling cascade + positive regulation of intracellular signaling cascade + positive regulation of intracellular signaling pathway + positive regulation of signal transduction via intracellular signaling cascade + up regulation of intracellular signaling cascade + up regulation of intracellular signaling pathway + up regulation of signal transduction via intracellular signaling cascade + up-regulation of intracellular signaling cascade + up-regulation of intracellular signaling pathway + up-regulation of signal transduction via intracellular signaling cascade + upregulation of intracellular signaling cascade + upregulation of intracellular signaling pathway + upregulation of signal transduction via intracellular signaling cascade + GO:1902533 + positive regulation of intracellular signal transduction + + + + Any process that activates or increases the frequency, rate or extent of intracellular signal transduction. + GOC:BHF + GOC:TermGenie + GOC:dph + GOC:signaling + GOC:tb + + + + + positive regulation of intracellular signaling chain + GOC:TermGenie + + + + + up regulation of intracellular signal transduction + GOC:TermGenie + + + + + up regulation of intracellular signaling chain + GOC:TermGenie + + + + + up-regulation of intracellular signal transduction + GOC:TermGenie + + + + + up-regulation of intracellular signaling chain + GOC:TermGenie + + + + + upregulation of intracellular signal transduction + GOC:TermGenie + + + + + upregulation of intracellular signaling chain + GOC:TermGenie + + + + + activation of intracellular signal transduction + GOC:TermGenie + + + + + activation of intracellular signal transduction pathway + GOC:TermGenie + + + + + activation of intracellular signaling cascade + GOC:TermGenie + + + + + activation of intracellular signaling chain + GOC:TermGenie + + + + + activation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + positive regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + positive regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + up regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + up regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + up-regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + up-regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + upregulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + upregulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + activation of intracellular signaling pathway + GOC:TermGenie + + + + + activation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + positive regulation of intracellular signaling cascade + GOC:TermGenie + + + + + positive regulation of intracellular signaling pathway + GOC:TermGenie + + + + + positive regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + up regulation of intracellular signaling cascade + GOC:TermGenie + + + + + up regulation of intracellular signaling pathway + GOC:TermGenie + + + + + up regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + up-regulation of intracellular signaling cascade + GOC:TermGenie + + + + + up-regulation of intracellular signaling pathway + GOC:TermGenie + + + + + up-regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + upregulation of intracellular signaling cascade + GOC:TermGenie + + + + + upregulation of intracellular signaling pathway + GOC:TermGenie + + + + + upregulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + - + diff --git a/imports/pco_import.json b/imports/pco_import.json index 542823c2..fa2b8bde 100644 --- a/imports/pco_import.json +++ b/imports/pco_import.json @@ -1,144 +1,5956 @@ { "graphs" : [ { "nodes" : [ { + "id" : "http://purl.obolibrary.org/obo/GO_0003674", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "molecular process" + } ] + }, + "type" : "CLASS", + "lbl" : "molecular_function" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_01000313", + "meta" : { + "definition" : { + "val" : "An anthropogenic environment is an environmental system which is the product of human activity.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "anthropogenic environment" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002297", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "results_in_formation_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GOC:mtg_berkeley_2013" + } ] + }, + "type" : "PROPERTY", + "lbl" : "results in formation of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002303", + "meta" : { + "definition" : { + "val" : "A quality of an object that has a value that is decreased compared to normal or average.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "decreased object quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001338", + "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in a population of multiple sexes.", + "xrefs" : [ "MGED:MGED" ] + } + }, + "type" : "CLASS", + "lbl" : "mixed sex" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002295", + "meta" : { + "definition" : { + "val" : "p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss).", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "results_in_developmental_progression_of" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Ontology_extensions" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "results in developmental progression of" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_2759", + "meta" : { + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "Eukaryotae", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "eukaryotes", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eucaryotae", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "eukaryotes", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eukarya", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "eucaryotes", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eucaryotae", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "eukaryotes", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eucarya", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eukaryotae", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "eukaryotes", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eucarya", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eukarya", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "eucaryotes", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Eukaryota" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002604", + "meta" : { + "definition" : { + "val" : "x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x).", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'anterior end of organism' is-opposite-of 'posterior end of organism'" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'increase in temperature' is-opposite-of 'decrease in temperature'" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is opposite of" + }, { + "id" : "http://purl.obolibrary.org/obo/CL_0000000", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/cl.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "cell" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002301", + "meta" : { + "definition" : { + "val" : "A quality that has a value that is decreased compared to normal or average.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "decreased quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000001", + "meta" : { + "definition" : { + "val" : "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "trait", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "quality (PATO)" + } ] + }, + "type" : "CLASS", + "lbl" : "quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000004", + "meta" : { + "definition" : { + "val" : "A quality that inheres in a community.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "These may not belong under BFO:quality. May be better to call them community characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Includes qualities like diversity, species richness, stability, resilience, community structure, number of trophic levels. A community quality may depend on the qualities of individual organism in the community, but cannot be measured or described for a single individual." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "CLASS", + "lbl" : "quality of an ecological community" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000003", + "meta" : { + "definition" : { + "val" : "A quality that inheres in a biological population.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Includes qualities like population size, population growth rate, carrying capacity, immigration rate, emigration rate, fecundity, and death rate. A population quality may depend on the qualities of individual organisms in the population, but cannot be measured or described for a single organism. This term may be replaced by a PATO term." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "See Chris's comments on population qualities at: http://code.google.com/p/popcomm-ontology/issues/detail?id=4. These may not belong under BFO:quality. May be better to call them population characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2." + } ] + }, + "type" : "CLASS", + "lbl" : "quality of a population" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016740", + "type" : "CLASS", + "lbl" : "transferase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002608", + "meta" : { + "definition" : { + "val" : "Inverse of 'causal agent in'", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has causal agent" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000078", + "meta" : { + "definition" : { + "val" : "The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "curation status specification" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "OBI_0000266" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Bill Bug" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + } ] + }, + "type" : "CLASS", + "lbl" : "curation status specification" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002609", + "meta" : { + "definition" : { + "val" : "A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + } ] + }, + "type" : "PROPERTY", + "lbl" : "related via dependence to" + }, { + "id" : "http://purl.obolibrary.org/obo/PO_0025131", + "meta" : { + "definition" : { + "val" : "An anatomical entity that is or was part of a plant.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "植物 解剖学（形態）的実体 (Japanese, exact)", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "entidad anatómica vegetal (Spanish, exact)", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "plant anatomical entity" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_7776", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "jawed vertebrates", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "Gnathostomata", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Gnathostomata " + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000014", + "meta" : { + "definition" : { + "val" : "A composite chromatic quality composed of hue, saturation and intensity parts.", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "relative color", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "colour", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "color" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", + "type" : "PROPERTY", + "lbl" : "has_related_synonym" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000017", + "meta" : { + "definition" : { + "val" : "A collection of organisms that has as parts every organism of given species and no organisms of any other species.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000120" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is neutral with respect to which organisms are included in a species. Membership will depend on the species concept and the taxonomic assertions used to define the species. These criteria must be specified by the user." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "At the moment there is no way to specify in an OWL axiom that the collection includes every individual of a species. This should be added, if possible." + } ] + }, + "type" : "CLASS", + "lbl" : "species as a collection of organisms" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000018", + "meta" : { + "definition" : { + "val" : "A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "collection of organisms of the same species" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000120" + } ] + }, + "type" : "CLASS", + "lbl" : "single-species collection of organisms" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000409", + "meta" : { + "definition" : { + "val" : "A denotator type indicates how a term should be interpreted from an ontological perspective.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are \"natural kinds\" and the latter arbitrary collections of entities." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Barry Smith, Werner Ceusters" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Alan Ruttenberg" + } ] + }, + "type" : "CLASS", + "lbl" : "denotator type" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_314146", + "type" : "CLASS", + "lbl" : "Euarchontoglires" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0003001", + "meta" : { + "definition" : { + "val" : "a produced_by b iff some process that occurs_in b has_output a.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" + } ] + }, + "type" : "PROPERTY", + "lbl" : "produced by" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001236", + "meta" : { + "definition" : { + "val" : "A quality which inheres in an process.", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "relational quality of occurrent", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quality of process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quality of occurrent", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quality of a process", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "process quality" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0003000", + "meta" : { + "definition" : { + "val" : "a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "produces" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_00010483", + "meta" : { + "definition" : { + "val" : "A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system.", + "xrefs" : [ "DOI:10.1186/2041-1480-4-43", "MA:ma", "ORCID:0000-0002-4366-3088", "URL:http://ontology.buffalo.edu/smith/articles/niches.html" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "portion of environmental material", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "environmental material" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000141", + "type" : "CLASS", + "lbl" : "structure" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_89593", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "Craniata", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Craniata " + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_33511", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "deuterostomes", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Deuterostomia" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000412", + "meta" : { + "definition" : { + "val" : "For external terms/classes, the ontology from which the term was imported", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "imported from" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Melanie Courtot" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" + } ] + }, + "type" : "PROPERTY", + "lbl" : "imported from" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000410", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Hard to give a definition for. Intuitively a \"natural kind\" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Alan Ruttenberg" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "universal" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_8287", + "type" : "CLASS", + "lbl" : "Sarcopterygii" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0100001", + "meta" : { + "definition" : { + "val" : "Use on obsolete terms, relating the term to another term that can be used as a substitute", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Person:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "term replaced by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Person:Alan Ruttenberg" + } ] + }, + "type" : "PROPERTY", + "lbl" : "term replaced by" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000000", + "meta" : { + "definition" : { + "val" : "A material entity that consists of two or more organisms, viruses, or viroids.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Examples include: population, community, species (meaning the collection of organisms that makes up a species, not the taxonomic rank), and family." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "group of organism" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "May be of the same or different species." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "organism collection" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "CLASS", + "lbl" : "collection of organisms" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000080", + "meta" : { + "definition" : { + "val" : "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "quality_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A quality inheres in its bearer at all times for which the quality exists." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is quality of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this red color is a quality of this apple" + } ] + }, + "type" : "PROPERTY", + "lbl" : "quality of" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0004872", + "type" : "CLASS", + "lbl" : "receptor activity" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000002", + "meta" : { + "definition" : { + "val" : "A community of at least two different species, living in a particular area. 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The word community, as it often used to describe a group of humans living together, is a type of single-species collection of organisms, not an ecological community." + } ] + }, + "type" : "CLASS", + "lbl" : "ecological community" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000001", + "meta" : { + "definition" : { + "val" : "A collection of organisms, all of the same species, that live in the same place.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "ISBN:0878932739" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "This a general term that can include every organism of a species living in an area or any subset of them. 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The definitions should be standardized across OBO Foundry ontologies and only one term used." + } ] + }, + "type" : "CLASS", + "lbl" : "population of organisms" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002264", + "meta" : { + "definition" : { + "val" : "c acts upstream of or within p if c is enables 'p' and p' causally upstream of or within p", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ] + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of or within" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000086", + "meta" : { + "definition" : { + "val" : "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this apple has quality this red color" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." + } ] + }, + "type" : "PROPERTY", + "lbl" : "has quality" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002263", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c enables 'p' and p' causally upstream of p", + "xrefs" : [ ] + } + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002019", + "meta" : { + "definition" : { + "val" : "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-07-19T17:30:36Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has ligand" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001241", + "meta" : { + "definition" : { + "val" : "A quality which inheres in a continuant.", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "monadic quality of an object", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quality of an object", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "monadic quality of continuant", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quality of a single physical entity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "monadic quality of a continuant", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quality of continuant", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "multiply inhering quality of a physical entity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quality of a continuant", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "physical object quality" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002015", + "meta" : { + "definition" : { + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:17Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has positive regulatory component activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002379", + "meta" : { + "definition" : { + "val" : "x spatially_coextensive_with y if and inly if x and y have the same location", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A lump of clay and a statue" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation is added for formal completeness. 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It is intended as a grouping for a diverse set of relations, all involving cause and effect." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causal relation between material entity and a process" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002353", + "meta" : { + "definition" : { + "val" : "inverse of has output", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "output of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002233", + "meta" : { + "definition" : { + "val" : "p has direct input c iff c is a participant in p, c is present at the start of p, and the state of c is modified during p.", + "xrefs" : [ ] + }, + "subsets" : [ 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"http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "pyrethroid -> growth" + } ] + }, + "type" : "PROPERTY", + "lbl" : "capable of regulating" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_9604", + "meta" : { + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "Pongidae", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "great apes", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Hominidae" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002597", + "meta" : { + "definition" : { + "val" : "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "capable of negatively regulating" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002234", + "meta" : { + "definition" : { + "val" : "p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "produces" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has output" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_9605", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "humans", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Homo" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_9606", + "meta" : { + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "humans", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "human", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "man", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Homo sapiens" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000056", + "meta" : { + "definition" : { + "val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this investigator participates in this investigation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this input material (or this output material) participates in this process" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "participates in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "participates_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this blood clot participates in this blood coagulation" + } ] + }, + "type" : "PROPERTY", + "lbl" : "participates in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002350", + "meta" : { + "definition" : { + "val" : "is member of is a mereological relation between a item and a collection.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "SIO" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is member of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "member part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "An organism that is a member of a population of organisms" + } ] + }, + "type" : "PROPERTY", + "lbl" : "member of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000053", + "meta" : { + "definition" : { + "val" : "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this apple is bearer of this red color" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "bearer_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "bearer of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this vase is bearer of this fragility" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is bearer of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "bearer of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002351", + "meta" : { + "definition" : { + "val" : "has member is a mereological relation between a collection and an item.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "SIO" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has member" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001018", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "contained_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "contained in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Containment is location not involving parthood, and arises only where some immaterial continuant is involved." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Intended meaning:\ndomain: material entity\nrange: spatial region or site (immaterial continuant)\n " + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):" + } ] + }, + "type" : "PROPERTY", + "lbl" : "contained in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001019", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "contains" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + } ] + }, + "type" : "PROPERTY", + "lbl" : "contains" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "type" : "PROPERTY", + "lbl" : "shorthand" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001015", + "meta" : { + "definition" : { + "val" : "a relation between two independent continuants, the location and the target, in which the target is entirely within the location", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my head is the location of my brain" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "location_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this cage is the location of this rat" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "is location of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "location of" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000028", + "meta" : { + "definition" : { + "val" : "A collection of organisms of the same species whose members are all either genealogically related to each other or have mated with each other.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Biological or social relations are covered by RO_0002437 (biotically interacts with), but that relations does provide an easy way to specify that two entities are interacting with each other (participating in the same interaction). Until that axiom is specified, the logical definition of this term is incomplete." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "These relations can include shared values, occupying the same spatial regkion. A community be be a single species collection of organsisms (as in a human community, which is also a type of population) or a or multi-species collection of organisms (as in an ecological community)." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000123" + } ] + }, + "type" : "CLASS", + "lbl" : "community" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000027", + "meta" : { + "definition" : { + "val" : "A collection of organisms of the same species that has as members only humans.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "human community" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "human population" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "CLASS", + "lbl" : "collection of humans" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000029", + "meta" : { + "definition" : { + "val" : "A collection of organisms that consists of two or more organisms from at least two species.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Need to add axiom to specify that it has at a mimum members of two different species, but not sure how to specify that. Can't say \"('has member' only ('member of' min 2 'species as a collection of organisms'))\"." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000123" + } ] + }, + "type" : "CLASS", + "lbl" : "multi-species collection of organisms" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#Subset", + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_314295", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "ape", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "apes", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Hominoidea" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002584", + "meta" : { + "definition" : { + "val" : "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has part structure that is capable of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002222", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "temporally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002464", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "helper property" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000117", + "meta" : { + "definition" : { + "val" : "A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "size" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002581", + "meta" : { + "definition" : { + "val" : "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL", + "xrefs" : [ ] + } + }, + "type" : "PROPERTY", + "lbl" : "is a defining property chain axiom" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002582", + "meta" : { + "definition" : { + "val" : "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. 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An editor note should indicate what is the URI of the new term to use." + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "term imported" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000229", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created." + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "term split" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_01000951", + "meta" : { + "definition" : { + "val" : "An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition.", + "xrefs" : [ "https://en.wikipedia.org/wiki/Anthropization", "https://en.wikipedia.org/wiki/Natural_environment" ] + } + }, + "type" : "CLASS", + "lbl" : "natural environment" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002331", + "meta" : { + "definition" : { + "val" : "c involved_in p if and only if c enables some process p', and p' is part of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "enables part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "actively involved in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002211", + "meta" : { + "definition" : { + "val" : "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Hill" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Regulation precludes parthood; the regulatory process may not be within the regulated process." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GO" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Tanya Berardini" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "regulates (processual)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "regulates" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000402", + "type" : "CLASS", + "lbl" : "branched" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002212", + "meta" : { + "definition" : { + "val" : "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "negatively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "negatively regulates" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002333", + "meta" : { + "definition" : { + "val" : "inverse of enables", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "enabled by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002450", + "meta" : { + "definition" : { + "val" : "Holds between molecules a and b if and only if a executes a process that directly activates a process executed by b.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "activates" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecularly increases activity of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002327", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is catalyzing" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is executing" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "catalyzes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "a particular instances of akt-2 enables some instance of protein kinase activity" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "enables" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002448", + "meta" : { + "definition" : { + "val" : "Holds between molecular entities a and b when the execution of a activates or inhibits the activity of b", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecularly controls" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002449", + "meta" : { + "definition" : { + "val" : "Holds between molecules a and b if and only if a executes a process that directly diminishes a process executed by b.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "inhibits" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecularly decreases activity of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002328", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This is a grouping relation that collects relations used for the purpose of connecting structure and function" + } ] + }, + "type" : "PROPERTY", + "lbl" : "functionally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002329", + "meta" : { + "definition" : { + "val" : "this relation holds between c and p when c is part of some c', and c' is capable of p.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "part of structure that is capable of" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000050", + "meta" : { + "definition" : { + "val" : "a core relation that holds between a part and its whole", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "is part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this day is part of this year (occurrent parthood)" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my brain is part of my body (continuant parthood, two material entities)" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." + } ] + }, + "type" : "PROPERTY", + "lbl" : "part of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002323", + "meta" : { + "definition" : { + "val" : "A mereological relationship or a topological relationship", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "mereotopologically related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002324", + "meta" : { + "definition" : { + "val" : "A relationship that holds between entities participating in some developmental process (GO:0032502)", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002566", + "meta" : { + "definition" : { + "val" : "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influences (material entity to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally influences" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002326", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We would like to say\n\nif and only if\n exists c', p'\n c part_of c' and c' capable_of p\n and\n c capable_of p' and p' part_of p\nthen\n c contributes_to p\n\nHowever, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. " + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to \"ribosome binding\". And all three are part_of an eIF2 complex" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to" + } ] + }, + "type" : "PROPERTY", + "lbl" : "contributes to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002447", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Axiomatization to GO to be added later" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." + } ] + }, + "type" : "PROPERTY", + "lbl" : "phosphorylates" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000116", + "meta" : { + "definition" : { + "val" : "An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "editor note" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "editor note" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_01001000", + "meta" : { + "definition" : { + "val" : "An environmental system which is determined by a living organism.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "host-associated environment", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "environmental system determined by an organism" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000117", + "meta" : { + "definition" : { + "val" : "Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "term editor" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115." + } ] + }, + "type" : "PROPERTY", + "lbl" : "term editor" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_01001002", + "meta" : { + "definition" : { + "val" : "An environmental system determined by an animal.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "Metazoan-associated environment", + "xrefs" : [ ] + }, { + "pred" : "hasBroadSynonym", + "val" : "animal environment", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "animal-associated environment" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000114", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Melanie Courtot" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "OBI_0000281" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has curation status" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Bill Bug" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has curation status" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000115", + "meta" : { + "definition" : { + "val" : "The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "2012-04-05: \nBarry Smith\n\nThe official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.\n\nCan you fix to something like:\n\nA statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.\n\nAlan Ruttenberg\n\nYour proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. \n\nOn the specifics of the proposed definition:\n\nWe don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. \n\nPersonally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. \n\nWe also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. " + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "definition" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + } ] + }, + "type" : "PROPERTY", + "lbl" : "definition" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000051", + "meta" : { + "definition" : { + "val" : "a core relation that holds between a whole and its part", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_part" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this year has part this day (occurrent parthood)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my body has part my brain (continuant parthood, two material entities)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has part" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has part" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000112", + "meta" : { + "definition" : { + "val" : "A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "example" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "example of usage" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001291", + "meta" : { + "definition" : { + "val" : "A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Electromagnetic_radiation" ] + } + }, + "type" : "CLASS", + "lbl" : "electromagnetic (EM) radiation quality" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000231", + "meta" : { + "definition" : { + "val" : "Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has obsolescence reason" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Melanie Courtot" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has obsolescence reason" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000111", + "meta" : { + "definition" : { + "val" : "The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "editor preferred term" + } ] + }, + "type" : "PROPERTY", + "lbl" : "editor preferred term" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000118", + "meta" : { + "definition" : { + "val" : "An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "alternative term" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + } ] + }, + "type" : "PROPERTY", + "lbl" : "alternative term" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000119", + "meta" : { + "definition" : { + "val" : "formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "definition source" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + } ] + }, + "type" : "PROPERTY", + "lbl" : "definition source" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002563", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "interaction relation helper property" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002564", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecular interaction relation helper property" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002559", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influenced by (material entity to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally influenced by" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000120", + "meta" : { + "definition" : { + "val" : "Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "metadata complete" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001900", + "meta" : { + "definition" : { + "val" : "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/ROAndTime" + } ] + }, + "type" : "PROPERTY", + "lbl" : "temporal interpretation" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_9443", + "meta" : { + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "primates", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "primate", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Primata", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Primates" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001901", + "meta" : { + "definition" : { + "val" : "\n\n## Elucidation\n\nThis is used when the statement/axiom is assumed to hold true 'eternally'\n\n## How to interpret (informal)\n\nFirst the \"atemporal\" FOL is derived from the OWL using the standard\ninterpretation. This axiom is temporalized by embedding the axiom\nwithin a for-all-times quantified sentence. The t argument is added to\nall instantiation predicates and predicates that use this relation.\n\n## Example\n\n Class: nucleus\n SubClassOf: part_of some cell\n\n forall t :\n forall n :\n instance_of(n,Nucleus,t)\n implies\n exists c :\n instance_of(c,Cell,t)\n part_of(n,c,t)\n\n## Notes\n\nThis interpretation is *not* the same as an at-all-times relation\n\n", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "axiom holds for all times" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002434", + "meta" : { + "definition" : { + "val" : "A relationship that holds between two entities in which the processes executed by the two entities are causally connected.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "in pairwise interaction with", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0914" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Considering relabeling as 'pairwise interacts with'" + } ] + }, + "type" : "PROPERTY", + "lbl" : "interacts with" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002314", + "meta" : { + "definition" : { + "val" : "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "inheres in part of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002436", + "meta" : { + "definition" : { + "val" : "An interaction relationship in which the two partners are molecular entities and are executing molecular processes that are directly causally connected.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/ECO_0000353" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0915" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "molecularly binds with" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "binds" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecularly interacts with" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_01001110", + "meta" : { + "definition" : { + "val" : "An environmental system which includes both living and non-living components.", + "xrefs" : [ "https://en.wikipedia.org/wiki/Ecosystem" ] + } + }, + "type" : "CLASS", + "lbl" : "ecosystem" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000125", + "meta" : { + "definition" : { + "val" : "All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "pending final vetting" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000123", + "meta" : { + "definition" : { + "val" : "Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "metadata incomplete" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000040", + "meta" : { + "definition" : { + "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "material entity" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000002", + "type" : "INDIVIDUAL", + "lbl" : "example to be eventually removed" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000124", + "meta" : { + "definition" : { + "val" : "Nothing done yet beyond assigning a unique class ID and proposing a preferred term.", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "uncurated" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000121", + "meta" : { + "definition" : { + "val" : "term created to ease viewing/sort terms for development purpose, and will not be included in a release", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "organizational term" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000122", + "meta" : { + "definition" : { + "val" : "Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking \"ready_for_release\" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed \"ready_for_release\" will also derived from a chain of ancestor classes that are also \"ready_for_release.\"", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "ready for release" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002430", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in negative regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_9526", + "type" : "CLASS", + "lbl" : "Catarrhini" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002431", + "meta" : { + "definition" : { + "val" : "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "involved in or reguates" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in or involved in regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002432", + "meta" : { + "definition" : { + "val" : "c executes activity in d if and only if c enables p and p occurs_in d", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes activity in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A protein that enables activity in a cytosol." + } ] + }, + "type" : "PROPERTY", + "lbl" : "enables activity in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002305", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "cjm" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of, negative effect" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002427", + "meta" : { + "definition" : { + "val" : "inverse of causally upstream of or within", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally downstream of or within" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0008150", + "meta" : { + "definition" : { + "val" : "Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.", + "xrefs" : [ "GOC:go_curators", "GOC:isa_complete" ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "single-organism process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "biological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "physiological process", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "single organism process", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "biological_process" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002428", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some 'p' and p' regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002429", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in positive regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002304", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "cjm" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of, positive effect" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", + "type" : "PROPERTY", + "lbl" : "has_obo_format_version" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001199", + "type" : "CLASS", + "lbl" : "linear" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_376913", + "type" : "CLASS", + "lbl" : "Haplorrhini" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_207598", + "meta" : { + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "Homo/Pan/Gorilla group", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Homininae" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_40674", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "mammals", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "mammals", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Mammalia" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002418", + "meta" : { + "definition" : { + "val" : "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "influences (processual)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of or within" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002411", + "meta" : { + "definition" : { + "val" : "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002412", + "meta" : { + "definition" : { + "val" : "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately causally upstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_117571", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "bony vertebrates", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Euteleostomi" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_117570", + "type" : "CLASS", + "lbl" : "Teleostomi" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000066", + "meta" : { + "definition" : { + "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "occurs_in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "occurs in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds_in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" + } ] + }, + "type" : "PROPERTY", + "lbl" : "occurs in" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "meta" : { + "definition" : { + "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "site of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "contains process" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000027", + "type" : "CLASS", + "lbl" : "data item" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000062", + "meta" : { + "definition" : { + "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is preceded by" + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "preceded by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "preceded_by" + } ] + }, + "type" : "PROPERTY", + "lbl" : "preceded by" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000063", + "meta" : { + "definition" : { + "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "precedes" + } ] + }, + "type" : "PROPERTY", + "lbl" : "precedes" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0003824", + "type" : "CLASS", + "lbl" : "catalytic activity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000019", + "type" : "CLASS", + "lbl" : "quality" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000015", + "meta" : { + "definition" : { + "val" : "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "process" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000428", + "meta" : { + "definition" : { + "val" : "A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "group:OBI" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "requires discussion" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002090", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/BFO_0000063" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "ends_at_start_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "meets" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately precedes" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001018", + "meta" : { + "definition" : { + "val" : "A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "relational physical quality", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "physical quality" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_02500000", + "meta" : { + "definition" : { + "val" : "A process in which includes the components of an environmental system as participants.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "environmental system process" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002410", + "meta" : { + "definition" : { + "val" : "This relation groups causal relations between material entities and causal relations between processes", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002404", + "meta" : { + "definition" : { + "val" : "inverse of upstream of", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally downstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000161", + "meta" : { + "definition" : { + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.", + "xrefs" : [ "PATOC:melissa" ] + } + }, + "type" : "CLASS", + "lbl" : "rate" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002405", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately causally downstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016301", + "type" : "CLASS", + "lbl" : "kinase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_32525", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "Theria", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Theria " + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", + "type" : "PROPERTY", + "lbl" : "in_subset" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_32524", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "amniotes", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Amniota" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_32523", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "tetrapods", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Tetrapoda" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000004", + "meta" : { + "definition" : { + "val" : "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. 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"http://purl.obolibrary.org/obo/RO_0002566", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002411", "http://purl.obolibrary.org/obo/RO_0002333" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000062", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000062" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002428", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/RO_0002211" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000066" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002598", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002429", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002211", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002578", "http://purl.obolibrary.org/obo/RO_0002578" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002314", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002314", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000063", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000063" ] + } ] } ] } \ No newline at end of file diff --git a/imports/pco_import.obo b/imports/pco_import.obo index 5ad6f962..0c8554e5 100644 --- a/imports/pco_import.obo +++ b/imports/pco_import.obo @@ -1,5 +1,9 @@ format-version: 1.2 -ontology: urn:absolute:/imports/pco_import.owl +data-version: pato/releases/2019-10-29/imports/pco_import.owl +subsetdef: ro-eco "" +subsetdef: RO:0002259 "" +ontology: pato/imports/pco_import +owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(AnnotationProperty())\n\n############################\n# Object Properties\n############################\n\n# Object Property: (located in)\n\nObjectPropertyRange( ObjectIntersectionOf( ObjectComplementOf()))\n\n# Object Property: (enabled by)\n\nSubObjectPropertyOf( ObjectInverseOf())\n\n# Object Property: (has member)\n\nIrreflexiveObjectProperty()\n\n\n\n############################\n# Classes\n############################\n\n# Class: (continuant)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (occurrent)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (independent continuant)\n\n\n# Class: (specifically dependent continuant)\n\n\n# Class: (generically dependent continuant)\n\n\n# Class: (material entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (immaterial entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (anthropogenic environment)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (natural environment)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectComplementOf(ObjectSomeValuesFrom( ))))\n\n# Class: (environmental system determined by a quality)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))))\nSubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))\n\n# Class: (environment associated with a plant part or small plant)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectUnionOf( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))))\nSubClassOf( ObjectSomeValuesFrom( ObjectUnionOf( ObjectIntersectionOf( ObjectSomeValuesFrom( )))))\n\n# Class: (ecosystem)\n\nEquivalentClasses( ObjectUnionOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))\n\n# Class: (environmental system process)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectUnionOf( )))\n\n# Class: (kinase activity)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (curation status specification)\n\nEquivalentClasses( ObjectOneOf( ))\n\n# Class: (obsolescence reason specification)\n\nEquivalentClasses( ObjectOneOf( ))\n\n# Class: (denotator type)\n\nEquivalentClasses( ObjectOneOf( ))\n\n# Class: (ecological community)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectMinCardinality(2 ObjectIntersectionOf( ObjectSomeValuesFrom( )))))\nSubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))\n\n# Class: (single-species collection of organisms)\n\nEquivalentClasses( ObjectIntersectionOf(ObjectAllValuesFrom( ) ObjectAllValuesFrom( ObjectExactCardinality(1 )) ObjectMinCardinality(2 )))\n\n# Class: ()\n\nEquivalentClasses( ObjectOneOf())\n\n\n############################\n# Named Individuals\n############################\n\n# Individual: (metadata complete)\n\n\n# Individual: (organizational term)\n\n\n# Individual: (ready for release)\n\n\n# Individual: (metadata incomplete)\n\n\n# Individual: (uncurated)\n\n\n# Individual: (pending final vetting)\n\n\n# Individual: (placeholder removed)\n\n\n# Individual: (terms merged)\n\n\n# Individual: (term imported)\n\n\n# Individual: (term split)\n\n\n# Individual: (to be replaced with external ontology term)\n\n\n# Individual: (requires discussion)\n\n\n\nSubClassOf(ObjectSomeValuesFrom( ) ObjectUnionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))))\nDisjointClasses( )\nDifferentIndividuals( )\nDifferentIndividuals( )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf() ) )\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z\"^^xsd:string) Annotation(rdfs:label \"infer input from direct reg\"^^xsd:string) Body(ClassAtom( Variable()) ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"GP(X) part_of complex(Y) enables MF(Z) -> X contributes_to Z\"^^xsd:string) Annotation(rdfs:label \"contrib to MF\"^^xsd:string) Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z),\ne.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'\") Annotation(rdfs:label \"enabling an MF enables its parts\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'\"^^xsd:string) Annotation(rdfs:label \"involved in BP\"^^xsd:string) Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From ligand activity to has_ligand\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to \\\"... -> overlaps\\\"\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.\") Annotation(rdfs:label \"inferring direct reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct neg reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct positive reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From has_ligand to ligand activity\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"effector input is compound function input\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"Input of effector is input of its parent MF\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly regulates X, its parent MF directly regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly positively regulates X, its parent MF directly positively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"if effector directly negatively regulates X, its parent MF directly negatively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nAnnotationAssertion(rdfs:comment \"\"@en)\n) [Term] id: BFO:0000001 @@ -8,80 +12,2046 @@ name: entity [Term] id: BFO:0000002 name: continuant +def: "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts." [] is_a: BFO:0000001 ! entity disjoint_from: BFO:0000003 ! occurrent [Term] id: BFO:0000003 name: occurrent +def: "An entity that has temporal parts and that happens, unfolds or develops through time." [] is_a: BFO:0000001 ! entity [Term] id: BFO:0000004 name: independent continuant +def: "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything." [] +def: "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/017-002"} is_a: BFO:0000002 ! continuant disjoint_from: BFO:0000020 ! specifically dependent continuant +disjoint_from: BFO:0000020 ! specifically dependent continuant +disjoint_from: BFO:0000031 ! generically dependent continuant + +[Term] +id: BFO:0000006 +name: spatial region +is_a: BFO:0000141 ! immaterial entity + +[Term] +id: BFO:0000015 +name: process +def: "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." [] +def: "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/083-003"} +is_a: BFO:0000003 ! occurrent + +[Term] +id: BFO:0000019 +name: quality +is_a: BFO:0000020 ! specifically dependent continuant [Term] id: BFO:0000020 name: specifically dependent continuant +def: "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same." [] +def: "b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])" [] +def: "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/050-003"} is_a: BFO:0000002 ! continuant +disjoint_from: BFO:0000031 ! generically dependent continuant [Term] id: BFO:0000027 name: object aggregate is_a: BFO:0000040 ! material entity +[Term] +id: BFO:0000029 +name: site +is_a: BFO:0000141 ! immaterial entity + +[Term] +id: BFO:0000031 +name: generically dependent continuant +def: "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time." [] +def: "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])" [] +is_a: BFO:0000002 ! continuant +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + [Term] id: BFO:0000040 name: material entity +def: "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time." [] +is_a: BFO:0000004 ! independent continuant +disjoint_from: BFO:0000141 ! immaterial entity + +[Term] +id: BFO:0000141 +name: immaterial entity is_a: BFO:0000004 ! independent continuant +[Term] +id: CARO:0000003 +name: anatomical structure +is_a: CARO:0000006 ! material anatomical entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl + +[Term] +id: CARO:0000006 +name: material anatomical entity +is_a: BFO:0000040 ! material entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl + +[Term] +id: CARO:0000014 +name: cell part +is_a: CARO:0000003 ! anatomical structure +property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl +property_value: IAO:0000589 "cell part (CARO)" xsd:string + [Term] id: CARO:0001010 name: organism or virus or viroid +def: "Material anatomical entity that is a member of an individual species or is a viral or viroid particle." [] is_a: PCO:0000031 ! organismal entity +property_value: http://purl.obolibrary.org/obo/IAO_created_by "Melissa Haendel" xsd:string +property_value: http://purl.obolibrary.org/obo/IAO_creation_date "9/18/11" xsd:string +property_value: IAO:0000589 "organism or virus" xsd:string + +[Term] +id: CL:0000000 +name: cell +is_a: CARO:0000003 ! anatomical structure +property_value: IAO:0000412 http://purl.obolibrary.org/obo/cl.owl + +[Term] +id: ENVO:00002297 +name: environmental feature +def: "A material entity which determines an environmental system." [DOI:10.1186/2041-1480-4-43, NM:nm, ORCID:0000-0002-4366-3088] +is_a: BFO:0000040 ! material entity +intersection_of: BFO:0000040 ! material entity +intersection_of: RO:0002508 ENVO:01000254 ! determines environmental system +relationship: RO:0002508 ENVO:01000254 ! determines environmental system + +[Term] +id: ENVO:00010483 +name: environmental material +def: "A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system." [DOI:10.1186/2041-1480-4-43, MA:ma, ORCID:0000-0002-4366-3088, URL:http\://ontology.buffalo.edu/smith/articles/niches.html] +synonym: "portion of environmental material" EXACT [] +is_a: BFO:0000040 ! material entity + +[Term] +id: ENVO:01000254 +name: environmental system +def: "A system which has the disposition to environ one or more material entities." [DOI:10.1186/2041-1480-4-43] +synonym: "environment" EXACT [] +is_a: RO:0002577 ! system + +[Term] +id: ENVO:01000313 +name: anthropogenic environment +def: "An anthropogenic environment is an environmental system which is the product of human activity." [] +is_a: ENVO:01000254 ! environmental system + +[Term] +id: ENVO:01000951 +name: natural environment +def: "An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition." [https://en.wikipedia.org/wiki/Anthropization, https://en.wikipedia.org/wiki/Natural_environment] +is_a: ENVO:01000254 ! environmental system + +[Term] +id: ENVO:01000952 +name: anthropisation +def: "A process during which a natural environmental system is altered by human action." [https://en.wikipedia.org/wiki/Anthropization] +synonym: "anthropization" EXACT [] +is_a: ENVO:02500027 ! anthropogenic environmental process +intersection_of: ENVO:02500027 ! anthropogenic environmental process +intersection_of: RO:0002233 ENVO:01000951 ! has input natural environment +intersection_of: RO:0002234 ENVO:01000313 ! has output anthropogenic environment +relationship: RO:0002233 ENVO:01000951 ! has input natural environment +relationship: RO:0002234 ENVO:01000313 ! has output anthropogenic environment + +[Term] +id: ENVO:01000997 +name: environmental system determined by a quality +def: "An environmental system which is determined by materials bearing roughly homogeneous qualities." [] +is_a: ENVO:01000254 ! environmental system + +[Term] +id: ENVO:01000998 +name: environmental system determined by a material +def: "An environmental system within which an environmental material strongly influences the system's composition and properties." [] +is_a: ENVO:01000254 ! environmental system +intersection_of: ENVO:01000254 ! environmental system +intersection_of: RO:0002507 ENVO:00010483 ! determined by environmental material +relationship: RO:0002507 ENVO:00010483 ! determined by environmental material + +[Term] +id: ENVO:01001000 +name: environmental system determined by an organism +def: "An environmental system which is determined by a living organism." [] +synonym: "host-associated environment" RELATED [] +is_a: ENVO:01001110 ! ecosystem +intersection_of: ENVO:01000254 ! environmental system +intersection_of: RO:0002507 NCBITaxon:131567 ! determined by cellular organisms +relationship: RO:0002507 NCBITaxon:131567 ! determined by cellular organisms + +[Term] +id: ENVO:01001002 +name: animal-associated environment +def: "An environmental system determined by an animal." [] +synonym: "animal environment" BROAD [] +synonym: "Metazoan-associated environment" EXACT [] +is_a: ENVO:01001000 ! environmental system determined by an organism +intersection_of: ENVO:01000254 ! environmental system +intersection_of: RO:0002507 NCBITaxon:33208 ! determined by Metazoa +relationship: RO:0002507 NCBITaxon:33208 ! determined by Metazoa + +[Term] +id: ENVO:01001055 +name: environment associated with an animal part or small animal +def: "An environmental system determined by part of a living or dead animal, or a whole small animal." [] +is_a: ENVO:01000254 ! environmental system +intersection_of: ENVO:01000254 ! environmental system +intersection_of: RO:0002507 CARO:0000006 ! determined by material anatomical entity +relationship: RO:0002507 CARO:0000006 ! determined by material anatomical entity + +[Term] +id: ENVO:01001057 +name: environment associated with a plant part or small plant +def: "An environmental system determined by part of a living or dead plant, or a whole small plant." [] +is_a: ENVO:01000254 ! environmental system + +[Term] +id: ENVO:01001110 +name: ecosystem +def: "An environmental system which includes both living and non-living components." [https://en.wikipedia.org/wiki/Ecosystem] +is_a: ENVO:01000254 ! environmental system + +[Term] +id: ENVO:02500000 +name: environmental system process +def: "A process in which includes the components of an environmental system as participants." [] +is_a: BFO:0000015 ! process + +[Term] +id: ENVO:02500027 +name: anthropogenic environmental process +def: "An environmental process which is driven by the action of humans." [] +is_a: ENVO:02500000 ! environmental system process +intersection_of: ENVO:02500000 ! environmental system process +intersection_of: RO:0002218 NCBITaxon:9606 ! has active participant Homo sapiens +relationship: RO:0002218 NCBITaxon:9606 ! has active participant Homo sapiens + +[Term] +id: GO:0003674 +name: molecular_function +is_a: BFO:0000015 ! process +property_value: IAO:0000589 "molecular process" xsd:string + +[Term] +id: GO:0003824 +name: catalytic activity +is_a: GO:0003674 ! molecular_function + +[Term] +id: GO:0004872 +name: receptor activity + +[Term] +id: GO:0005634 +name: nucleus +is_a: GO:0044464 ! cell part +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl + +[Term] +id: GO:0008150 +name: biological_process +def: "Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end." [GOC:go_curators, GOC:isa_complete] +synonym: "biological process" EXACT [] +synonym: "physiological process" EXACT [] +synonym: "single organism process" RELATED [] +synonym: "single-organism process" RELATED [] +is_a: BFO:0000015 ! process + +[Term] +id: GO:0016301 +name: kinase activity +is_a: GO:0016772 ! transferase activity, transferring phosphorus-containing groups + +[Term] +id: GO:0016740 +name: transferase activity +is_a: GO:0003824 ! catalytic activity + +[Term] +id: GO:0016772 +name: transferase activity, transferring phosphorus-containing groups +is_a: GO:0016740 ! transferase activity + +[Term] +id: GO:0042995 +name: cell projection +is_a: GO:0044464 ! cell part +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl + +[Term] +id: GO:0044464 +name: cell part +is_a: CARO:0000014 ! cell part +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl + +[Term] +id: IAO:0000027 +name: data item +is_a: IAO:0000030 ! information content entity + +[Term] +id: IAO:0000030 +name: information content entity +is_a: BFO:0000031 ! generically dependent continuant + +[Term] +id: IAO:0000078 +name: curation status specification +def: "The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value." [] +is_a: IAO:0000102 ! data about an ontology part +property_value: IAO:0000111 "curation status specification" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)" xsd:string +property_value: IAO:0000117 "PERSON:Bill Bug" xsd:string +property_value: IAO:0000119 GROUP:OBI: xsd:string +property_value: IAO:0000119 "OBI_0000266" xsd:string + +[Term] +id: IAO:0000102 +name: data about an ontology part +def: "data about an ontology part is a data item about a part of an ontology, for example a term" [] +is_a: IAO:0000027 ! data item +property_value: IAO:0000117 "Person:Alan Ruttenberg" xsd:string + +[Term] +id: IAO:0000225 +name: obsolescence reason specification +def: "The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value." [] +is_a: IAO:0000102 ! data about an ontology part +property_value: IAO:0000111 "obsolescence reason specification" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology." xsd:string +property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string +property_value: IAO:0000117 "PERSON: Melanie Courtot" xsd:string + +[Term] +id: IAO:0000409 +name: denotator type +def: "A denotator type indicates how a term should be interpreted from an ontological perspective." [] +is_a: IAO:0000102 ! data about an ontology part +property_value: IAO:0000112 "The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are \"natural kinds\" and the latter arbitrary collections of entities." xsd:string +property_value: IAO:0000117 "Alan Ruttenberg" xsd:string +property_value: IAO:0000119 "Barry Smith, Werner Ceusters" xsd:string + +[Term] +id: NCBITaxon:1 +name: root +synonym: "all" RELATED synonym [] +is_a: BFO:0000040 ! material entity + +[Term] +id: NCBITaxon:117570 +name: Teleostomi +is_a: NCBITaxon:7776 ! Gnathostomata + +[Term] +id: NCBITaxon:117571 +name: Euteleostomi +synonym: "bony vertebrates" EXACT genbank_common_name [] +is_a: NCBITaxon:117570 ! Teleostomi + +[Term] +id: NCBITaxon:131567 +name: cellular organisms +synonym: "biota" RELATED synonym [] +is_a: NCBITaxon:1 ! root + +[Term] +id: NCBITaxon:1338369 +name: Dipnotetrapodomorpha +is_a: NCBITaxon:8287 ! Sarcopterygii + +[Term] +id: NCBITaxon:1437010 +name: Boreoeutheria +synonym: "Boreotheria" RELATED synonym [] +is_a: NCBITaxon:9347 ! Eutheria + +[Term] +id: NCBITaxon:207598 +name: Homininae +synonym: "Homo/Pan/Gorilla group" RELATED synonym [] +is_a: NCBITaxon:9604 ! Hominidae + +[Term] +id: NCBITaxon:2759 +name: Eukaryota +synonym: "Eucarya" RELATED synonym [] +synonym: "Eucaryotae" RELATED synonym [] +synonym: "eucaryotes" EXACT genbank_common_name [] +synonym: "Eukarya" RELATED synonym [] +synonym: "Eukaryotae" RELATED synonym [] +synonym: "eukaryotes" EXACT common_name [] +synonym: "eukaryotes" RELATED blast_name [] +is_a: NCBITaxon:131567 ! cellular organisms + +[Term] +id: NCBITaxon:314146 +name: Euarchontoglires +is_a: NCBITaxon:1437010 ! Boreoeutheria + +[Term] +id: NCBITaxon:314293 +name: Simiiformes +synonym: "Anthropoidea" RELATED synonym [] +is_a: NCBITaxon:376913 ! Haplorrhini + +[Term] +id: NCBITaxon:314295 +name: Hominoidea +synonym: "ape" EXACT common_name [] +synonym: "apes" EXACT genbank_common_name [] +is_a: NCBITaxon:9526 ! Catarrhini + +[Term] +id: NCBITaxon:32523 +name: Tetrapoda +synonym: "tetrapods" EXACT genbank_common_name [] +is_a: NCBITaxon:1338369 ! Dipnotetrapodomorpha + +[Term] +id: NCBITaxon:32524 +name: Amniota +synonym: "amniotes" EXACT genbank_common_name [] +is_a: NCBITaxon:32523 ! Tetrapoda + +[Term] +id: NCBITaxon:32525 +name: Theria +synonym: "Theria" EXACT scientific_name [] +is_a: NCBITaxon:40674 ! Mammalia + +[Term] +id: NCBITaxon:33154 +name: Opisthokonta +synonym: "Fungi/Metazoa group" RELATED synonym [] +synonym: "opisthokonts" RELATED synonym [] +is_a: NCBITaxon:2759 ! Eukaryota + +[Term] +id: NCBITaxon:33208 +name: Metazoa +synonym: "Animalia" RELATED synonym [] +synonym: "animals" RELATED blast_name [] +synonym: "metazoans" EXACT genbank_common_name [] +synonym: "multicellular animals" EXACT common_name [] +is_a: NCBITaxon:33154 ! Opisthokonta + +[Term] +id: NCBITaxon:33213 +name: Bilateria +is_a: NCBITaxon:6072 ! Eumetazoa + +[Term] +id: NCBITaxon:33511 +name: Deuterostomia +synonym: "deuterostomes" EXACT common_name [] +is_a: NCBITaxon:33213 ! Bilateria + +[Term] +id: NCBITaxon:376913 +name: Haplorrhini +is_a: NCBITaxon:9443 ! Primates + +[Term] +id: NCBITaxon:40674 +name: Mammalia +synonym: "mammals" EXACT genbank_common_name [] +synonym: "mammals" RELATED blast_name [] +is_a: NCBITaxon:32524 ! Amniota + +[Term] +id: NCBITaxon:6072 +name: Eumetazoa +is_a: NCBITaxon:33208 ! Metazoa + +[Term] +id: NCBITaxon:7711 +name: Chordata +synonym: "chordates" EXACT genbank_common_name [] +synonym: "chordates" RELATED blast_name [] +is_a: NCBITaxon:33511 ! Deuterostomia + +[Term] +id: NCBITaxon:7742 +name: Vertebrata +synonym: "Vertebrata" EXACT scientific_name [] +synonym: "vertebrates" EXACT genbank_common_name [] +synonym: "vertebrates" RELATED blast_name [] +is_a: NCBITaxon:89593 ! Craniata + +[Term] +id: NCBITaxon:7776 +name: Gnathostomata +synonym: "Gnathostomata" EXACT scientific_name [] +synonym: "jawed vertebrates" EXACT genbank_common_name [] +is_a: NCBITaxon:7742 ! Vertebrata + +[Term] +id: NCBITaxon:8287 +name: Sarcopterygii +is_a: NCBITaxon:117571 ! Euteleostomi + +[Term] +id: NCBITaxon:89593 +name: Craniata +synonym: "Craniata" EXACT scientific_name [] +is_a: NCBITaxon:7711 ! Chordata + +[Term] +id: NCBITaxon:9347 +name: Eutheria +synonym: "eutherian mammals" EXACT common_name [] +synonym: "placental mammals" EXACT common_name [] +synonym: "Placentalia" RELATED synonym [] +synonym: "placentals" EXACT genbank_common_name [] +synonym: "placentals" RELATED blast_name [] +is_a: NCBITaxon:32525 ! Theria + +[Term] +id: NCBITaxon:9443 +name: Primates +synonym: "Primata" RELATED synonym [] +synonym: "primate" EXACT equivalent_name [] +synonym: "primates" RELATED blast_name [] +is_a: NCBITaxon:314146 ! Euarchontoglires + +[Term] +id: NCBITaxon:9526 +name: Catarrhini +is_a: NCBITaxon:314293 ! Simiiformes + +[Term] +id: NCBITaxon:9604 +name: Hominidae +synonym: "great apes" EXACT genbank_common_name [] +synonym: "Pongidae" RELATED synonym [] +is_a: NCBITaxon:314295 ! Hominoidea + +[Term] +id: NCBITaxon:9605 +name: Homo +synonym: "humans" EXACT common_name [] +is_a: NCBITaxon:207598 ! Homininae + +[Term] +id: NCBITaxon:9606 +name: Homo sapiens +synonym: "human" EXACT genbank_common_name [] +synonym: "humans" RELATED [] +synonym: "man" EXACT common_name [] +is_a: NCBITaxon:9605 ! Homo [Term] id: PATO:0000001 name: quality +def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" [PATOC:GVG] +synonym: "trait" EXACT [] +is_a: BFO:0000020 ! specifically dependent continuant +property_value: IAO:0000589 "quality (PATO)" xsd:string + +[Term] +id: PATO:0000014 +name: color +def: "A composite chromatic quality composed of hue, saturation and intensity parts." [PATOC:GVG] +synonym: "colour" EXACT [] +synonym: "relative color" EXACT [] +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0000051 +name: morphology +def: "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure." [] +is_a: BFO:0000019 ! quality +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0000052 +name: shape +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000068 +name: qualitative +is_a: PATO:0000001 ! quality + +[Term] +id: PATO:0000069 +name: deviation(from_normal) +def: "A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average." [] +is_a: PATO:0000068 ! qualitative + +[Term] +id: PATO:0000117 +name: size +def: "A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude." [] +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000141 +name: structure +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000161 +name: rate +def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time." [PATOC:melissa] +is_a: PATO:0002062 ! physical quality of a process + +[Term] +id: PATO:0000322 +name: red +def: "A color hue with high wavelength of the long-wave end of the visible spectrum, evoked in the human observer by radiant energy with wavelengths of approximately 630 to 750 nanometers." [Dictionary:http\://dictionary.reference.com/] +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000402 +name: branched +is_a: PATO:0002009 ! branchiness + +[Term] +id: PATO:0000587 +name: decreased size +def: "A size quality which is relatively low." [] +synonym: "hypoplasia" NARROW [] +synonym: "reduced" RELATED [] +synonym: "small" RELATED [] +synonym: "tiny" RELATED [] +synonym: "underdeveloped" NARROW [] +is_a: PATO:0000117 ! size +is_a: PATO:0002303 ! decreased object quality + +[Term] +id: PATO:0001018 +name: physical quality +def: "A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities." [PATOC:GVG] +synonym: "relational physical quality" EXACT [] +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001199 +name: linear +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001236 +name: process quality +def: "A quality which inheres in an process." [PATOC:GVG] +synonym: "quality of a process" EXACT [] +synonym: "quality of occurrent" EXACT [] +synonym: "quality of process" EXACT [] +synonym: "relational quality of occurrent" EXACT [] +is_a: PATO:0000001 ! quality [Term] id: PATO:0001241 name: physical object quality +def: "A quality which inheres in a continuant." [PATOC:GVG] +synonym: "monadic quality of a continuant" EXACT [] +synonym: "monadic quality of an object" NARROW [] +synonym: "monadic quality of continuant" NARROW [] +synonym: "multiply inhering quality of a physical entity" EXACT [] +synonym: "quality of a continuant" EXACT [] +synonym: "quality of a single physical entity" EXACT [] +synonym: "quality of an object" EXACT [] +synonym: "quality of continuant" EXACT [] is_a: PATO:0000001 ! quality +[Term] +id: PATO:0001291 +name: electromagnetic (EM) radiation quality +def: "A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation." [Wikipedia:http\://en.wikipedia.org/wiki/Electromagnetic_radiation] +is_a: PATO:0001739 ! radiation quality + +[Term] +id: PATO:0001300 +name: optical quality +def: "An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light." [PATOC:GVG] +is_a: PATO:0001291 ! electromagnetic (EM) radiation quality + +[Term] +id: PATO:0001338 +name: mixed sex +def: "A biological sex quality inhering in a population of multiple sexes." [MGED:MGED] +is_a: PATO:0002003 ! population quality + +[Term] +id: PATO:0001415 +name: morbidity +def: "A quality inhering in a population by virtue of the proportion of its members that are ill at a given time." [PATOC:GVG] +is_a: PATO:0002003 ! population quality + +[Term] +id: PATO:0001739 +name: radiation quality +def: "A quality that inheres in an bearer by virtue of how that bearer interacts with radiation." [PATOC:GVG] +is_a: PATO:0001018 ! physical quality + [Term] id: PATO:0002003 name: population quality +def: "A quality that inheres in an entire population or part of a population." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality +[Term] +id: PATO:0002009 +name: branchiness +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0002062 +name: physical quality of a process +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0002124 +name: laminar +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0002301 +name: decreased quality +def: "A quality that has a value that is decreased compared to normal or average." [] +is_a: PATO:0000069 ! deviation(from_normal) + +[Term] +id: PATO:0002303 +name: decreased object quality +def: "A quality of an object that has a value that is decreased compared to normal or average." [] +is_a: PATO:0001241 ! physical object quality +is_a: PATO:0002301 ! decreased quality + [Term] id: PCO:0000000 name: collection of organisms +def: "A material entity that consists of two or more organisms, viruses, or viroids." [] +comment: May be of the same or different species. is_a: BFO:0000027 ! object aggregate is_a: PCO:0000031 ! organismal entity +intersection_of: RO:0002351 CARO:0001010 {all_only="true"} ! has member organism or virus or viroid +intersection_of: RO:0002351 CARO:0001010 {minCardinality="2"} ! has member organism or virus or viroid +relationship: RO:0002351 CARO:0001010 ! has member organism or virus or viroid +property_value: IAO:0000112 "Examples include: population, community, species (meaning the collection of organisms that makes up a species, not the taxonomic rank), and family." xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000118 "group of organism" xsd:string +property_value: IAO:0000118 "organism collection" xsd:string [Term] id: PCO:0000001 name: population of organisms +def: "A collection of organisms, all of the same species, that live in the same place." [] +comment: It is sometimes difficult to define the physical boundaries of a population. In the case of sexually reproducing organisms, the individuals within a population have the potential to reproduce with one another during the course of their lifetimes. 'Community', as often used to describe a group of humans, is a type of population. \n\nClasses for population already exist in IDO ('organism population', IDO_0000509) and OBI ('population', OBI_0000181). The definitions should be standardized across OBO Foundry ontologies and only one term used. is_a: PCO:0000018 ! single-species collection of organisms +property_value: IAO:0000112 "" xsd:string +property_value: IAO:0000112 "This a general term that can include every organism of a species living in an area or any subset of them. Subclasses can be more specific as needed." xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000119 ISBN:0878932739 xsd:string + +[Term] +id: PCO:0000002 +name: ecological community +def: "A community of at least two different species, living in a particular area. Must have at least two populations of different species as members." [] +comment: Ecological community is defined broadly here, but includes both ecological interactions (inherited from parent term community) and spatial co-existence. It may be used to describe every organisms living in an area, but is often used to refer only to organisms of a particular taxon or guild (e.g., the plant community, the insect community, the herbivore community). The word community, as it often used to describe a group of humans living together, is a type of single-species collection of organisms, not an ecological community. +is_a: PCO:0000028 ! community +is_a: PCO:0000029 ! multi-species collection of organisms +property_value: IAO:0000114 IAO:0000123 +property_value: IAO:0000116 "Not sure if the equivalancy axiom specifies that both populations are located in the same site." xsd:string +property_value: IAO:0000118 "multispecies community" xsd:string +property_value: IAO:0000119 ISBN:0865423504 xsd:string [Term] id: PCO:0000003 name: quality of a population -is_a: BFO:0000020 ! specifically dependent continuant +def: "A quality that inheres in a biological population." [] +comment: Includes qualities like population size, population growth rate, carrying capacity, immigration rate, emigration rate, fecundity, and death rate. A population quality may depend on the qualities of individual organisms in the population, but cannot be measured or described for a single organism. This term may be replaced by a PATO term. +is_a: PATO:0002003 ! population quality +intersection_of: PATO:0002003 ! population quality +intersection_of: RO:0000052 PCO:0000001 ! inheres in population of organisms +relationship: RO:0000052 PCO:0000001 ! inheres in population of organisms +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000116 "See Chris's comments on population qualities at: http://code.google.com/p/popcomm-ontology/issues/detail?id=4. These may not belong under BFO:quality. May be better to call them population characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2." xsd:string + +[Term] +id: PCO:0000004 +name: quality of an ecological community +def: "A quality that inheres in a community." [] +comment: Includes qualities like diversity, species richness, stability, resilience, community structure, number of trophic levels. A community quality may depend on the qualities of individual organism in the community, but cannot be measured or described for a single individual. is_a: PATO:0002003 ! population quality +intersection_of: PATO:0002003 ! population quality +intersection_of: RO:0000052 PCO:0000002 ! inheres in ecological community +relationship: RO:0000052 PCO:0000002 ! inheres in ecological community +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000116 "These may not belong under BFO:quality. May be better to call them community characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2." xsd:string + +[Term] +id: PCO:0000017 +name: species as a collection of organisms +def: "A collection of organisms that has as parts every organism of given species and no organisms of any other species." [] +comment: This term is neutral with respect to which organisms are included in a species. Membership will depend on the species concept and the taxonomic assertions used to define the species. These criteria must be specified by the user. +is_a: PCO:0000018 ! single-species collection of organisms +property_value: IAO:0000114 IAO:0000120 +property_value: IAO:0000116 "At the moment there is no way to specify in an OWL axiom that the collection includes every individual of a species. This should be added, if possible." xsd:string [Term] id: PCO:0000018 name: single-species collection of organisms +def: "A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species." [] is_a: PCO:0000000 ! collection of organisms +property_value: IAO:0000114 IAO:0000120 +property_value: IAO:0000118 "collection of organisms of the same species" xsd:string + +[Term] +id: PCO:0000027 +name: collection of humans +def: "A collection of organisms of the same species that has as members only humans." [] +is_a: PCO:0000018 ! single-species collection of organisms +intersection_of: PCO:0000018 ! single-species collection of organisms +intersection_of: RO:0002351 NCBITaxon:9606 {all_only="true"} ! has member Homo sapiens +intersection_of: RO:0002351 NCBITaxon:9606 {minCardinality="2"} ! has member Homo sapiens +relationship: RO:0002351 NCBITaxon:9606 ! has member Homo sapiens +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000118 "human community" xsd:string +property_value: IAO:0000118 "human population" xsd:string + +[Term] +id: PCO:0000028 +name: community +def: "A collection of organisms of the same species whose members are all either genealogically related to each other or have mated with each other." [] +comment: These relations can include shared values, occupying the same spatial regkion. A community be be a single species collection of organsisms (as in a human community, which is also a type of population) or a or multi-species collection of organisms (as in an ecological community). +is_a: PCO:0000000 ! collection of organisms +property_value: IAO:0000114 IAO:0000123 +property_value: IAO:0000116 "Biological or social relations are covered by RO_0002437 (biotically interacts with), but that relations does provide an easy way to specify that two entities are interacting with each other (participating in the same interaction). Until that axiom is specified, the logical definition of this term is incomplete." xsd:string + +[Term] +id: PCO:0000029 +name: multi-species collection of organisms +def: "A collection of organisms that consists of two or more organisms from at least two species." [] +is_a: PCO:0000000 ! collection of organisms +property_value: IAO:0000114 IAO:0000123 +property_value: IAO:0000116 "Need to add axiom to specify that it has at a mimum members of two different species, but not sure how to specify that. Can't say \"('has member' only ('member of' min 2 'species as a collection of organisms'))\"." xsd:string [Term] id: PCO:0000031 name: organismal entity +def: "A material entity that is one or more organisms, viruses or viroids." [] is_a: BFO:0000040 ! material entity union_of: CARO:0001010 ! organism or virus or viroid union_of: PCO:0000000 ! collection of organisms +property_value: IAO:0000114 IAO:0000125 + +[Term] +id: PO:0000003 +name: whole plant +def: "A plant structure (PO:0005679) which is a whole organism." [] +synonym: "bush (narrow)" NARROW [] +synonym: "clonal colony (related)" RELATED [] +synonym: "colony (related)" RELATED [] +synonym: "frutex (narrow)" NARROW [] +synonym: "frutices (narrow)" NARROW [] +synonym: "gametophyte (narrow)" NARROW [] +synonym: "genet (broad)" BROAD [] +synonym: "herb (narrow)" NARROW [] +synonym: "liana (narrow)" NARROW [] +synonym: "planta entera (Spanish, exact)" EXACT [] +synonym: "prothalli (narrow)" NARROW [] +synonym: "prothallium (narrow)" NARROW [] +synonym: "prothallus (narrow)" NARROW [] +synonym: "ramet (broad)" BROAD [] +synonym: "seedling (narrow)" NARROW [] +synonym: "shrub (narrow)" NARROW [] +synonym: "sporophyte (narrow)" NARROW [] +synonym: "suffrutex (narrow)" NARROW [] +synonym: "suffrutices (narrow)" NARROW [] +synonym: "tree (narrow)" NARROW [] +synonym: "vine (narrow)" NARROW [] +synonym: "woody clump (narrow)" NARROW [] +synonym: "植物体全体 (Japanese, exact)" EXACT [] +is_a: PO:0009011 ! plant structure + +[Term] +id: PO:0009011 +name: plant structure +def: "An anatomical structure that is or was part of a plant, or was derived from a part of a plant." [] +synonym: "estructura vegetal (Spanish, exact)" EXACT [] +synonym: "植物 構造 (Japanese, exact)" EXACT [] +is_a: PO:0025131 ! plant anatomical entity + +[Term] +id: PO:0025131 +name: plant anatomical entity +def: "An anatomical entity that is or was part of a plant." [] +synonym: "entidad anatómica vegetal (Spanish, exact)" EXACT [] +synonym: "植物 解剖学（形態）的実体 (Japanese, exact)" EXACT [] +is_a: BFO:0000040 ! material entity + +[Term] +id: RO:0002577 +name: system +def: "A material entity consisting of multiple components that are causally integrated." [] +is_a: BFO:0000040 ! material entity +property_value: IAO:0000116 "May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.jbiomedsem.com/content/4/1/43 xsd:string + +[Term] +id: Subset +is_a: IAO:0000102 ! data about an ontology part + +[Term] +id: UBERON:0001062 +name: anatomical entity +def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [] +is_a: BFO:0000004 ! independent continuant + +[Typedef] +id: BFO:0000050 +name: part of +def: "a core relation that holds between a part and its whole" [] +property_value: IAO:0000111 "is part of" xsd:string +property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string +property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string +property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string +property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string +property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string +property_value: IAO:0000118 "part_of" xsd:string +property_value: RO:0001900 RO:0001901 +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf +property_value: seeAlso http://www.obofoundry.org/ro/#OBO_REL:part_of xsd:string +is_transitive: true +is_a: RO:0002131 ! overlaps +inverse_of: BFO:0000051 ! has part + +[Typedef] +id: BFO:0000051 +name: has part +def: "a core relation that holds between a whole and its part" [] +property_value: IAO:0000111 "has part" xsd:string +property_value: IAO:0000112 "my body has part my brain (continuant parthood, two material entities)" xsd:string +property_value: IAO:0000112 "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" xsd:string +property_value: IAO:0000112 "this year has part this day (occurrent parthood)" xsd:string +property_value: IAO:0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." xsd:string +property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string +property_value: IAO:0000118 "has_part" xsd:string +property_value: RO:0001900 RO:0001901 +is_transitive: true +is_a: RO:0002131 ! overlaps + +[Typedef] +id: BFO:0000062 +name: preceded by +def: "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] +subset: ro-eco +property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:preceded_by xsd:string +property_value: IAO:0000111 "preceded by" xsd:string +property_value: IAO:0000116 "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." xsd:string +property_value: IAO:0000118 "is preceded by" xsd:string +property_value: IAO:0000118 "preceded_by" xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent +holds_over_chain: BFO:0000050 BFO:0000062 +is_transitive: true +is_a: RO:0002086 ! ends after +inverse_of: BFO:0000063 ! precedes + +[Typedef] +id: BFO:0000063 +name: precedes +def: "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] +subset: ro-eco +property_value: IAO:0000111 "precedes" xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent +holds_over_chain: BFO:0000050 BFO:0000063 +is_transitive: true +is_a: RO:0002222 ! temporally related to + +[Typedef] +id: BFO:0000066 +name: occurs in +def: "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" [] +comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant +property_value: IAO:0000111 "occurs in" xsd:string +property_value: IAO:0000118 "occurs_in" xsd:string +property_value: IAO:0000118 "unfolds in" xsd:string +property_value: IAO:0000118 "unfolds_in" xsd:string +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl +domain: BFO:0000003 ! occurrent +range: BFO:0000004 ! independent continuant +holds_over_chain: BFO:0000050 BFO:0000066 +inverse_of: BFO:0000067 ! contains process +transitive_over: BFO:0000050 ! part of + +[Typedef] +id: BFO:0000067 +name: contains process +def: "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" [] +comment: Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant +property_value: IAO:0000111 "site of" xsd:string +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Typedef] +id: RO:0000052 +name: inheres in +def: "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence" [] +property_value: IAO:0000111 "inheres in" xsd:string +property_value: IAO:0000112 "this fragility inheres in this vase" xsd:string +property_value: IAO:0000112 "this red color inheres in this apple" xsd:string +property_value: IAO:0000116 "A dependent inheres in its bearer at all times for which the dependent exists." xsd:string +property_value: IAO:0000118 "inheres_in" xsd:string +property_value: RO:0001900 RO:0001901 +is_a: RO:0002314 ! inheres in part of +inverse_of: RO:0000053 ! bearer of + +[Typedef] +id: RO:0000053 +name: bearer of +def: "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence" [] +property_value: IAO:0000111 "bearer of" xsd:string +property_value: IAO:0000112 "this apple is bearer of this red color" xsd:string +property_value: IAO:0000112 "this vase is bearer of this fragility" xsd:string +property_value: IAO:0000116 "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." xsd:string +property_value: IAO:0000118 "bearer_of" xsd:string +property_value: IAO:0000118 "is bearer of" xsd:string +property_value: RO:0001900 RO:0001901 +range: BFO:0000020 ! specifically dependent continuant + +[Typedef] +id: RO:0000056 +name: participates in +def: "a relation between a continuant and a process, in which the continuant is somehow involved in the process" [] +property_value: IAO:0000111 "participates in" xsd:string +property_value: IAO:0000112 "this blood clot participates in this blood coagulation" xsd:string +property_value: IAO:0000112 "this input material (or this output material) participates in this process" xsd:string +property_value: IAO:0000112 "this investigator participates in this investigation" xsd:string +property_value: IAO:0000118 "participates_in" xsd:string +domain: BFO:0000002 ! continuant +range: BFO:0000003 ! occurrent +inverse_of: RO:0000057 ! has participant + +[Typedef] +id: RO:0000057 +name: has participant +def: "a relation between a process and a continuant, in which the continuant is somehow involved in the process" [] +property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:has_participant xsd:string +property_value: IAO:0000111 "has participant" xsd:string +property_value: IAO:0000112 "this blood coagulation has participant this blood clot" xsd:string +property_value: IAO:0000112 "this investigation has participant this investigator" xsd:string +property_value: IAO:0000112 "this process has participant this input material (or this output material)" xsd:string +property_value: IAO:0000116 "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." xsd:string +property_value: IAO:0000118 "has_participant" xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000002 ! continuant +holds_over_chain: BFO:0000051 RO:0000057 + +[Typedef] +id: RO:0000080 +name: quality of +def: "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence" [] +property_value: IAO:0000112 "this red color is a quality of this apple" xsd:string +property_value: IAO:0000116 "A quality inheres in its bearer at all times for which the quality exists." xsd:string +property_value: IAO:0000118 "is quality of" xsd:string +property_value: IAO:0000118 "quality_of" xsd:string +is_a: RO:0000052 ! inheres in +inverse_of: RO:0000086 ! has quality + +[Typedef] +id: RO:0000086 +name: has quality +def: "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence" [] +property_value: IAO:0000112 "this apple has quality this red color" xsd:string +property_value: IAO:0000116 "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." xsd:string +property_value: IAO:0000118 "has_quality" xsd:string +range: BFO:0000019 ! quality +is_a: RO:0000053 ! bearer of + +[Typedef] +id: RO:0001015 +name: location of +def: "a relation between two independent continuants, the location and the target, in which the target is entirely within the location" [] +property_value: IAO:0000111 "is location of" xsd:string +property_value: IAO:0000112 "my head is the location of my brain" xsd:string +property_value: IAO:0000112 "this cage is the location of this rat" xsd:string +property_value: IAO:0000116 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000118 "location_of" xsd:string +property_value: RO:0001900 RO:0001901 +is_transitive: true +inverse_of: RO:0001025 ! located in + +[Typedef] +id: RO:0001018 +name: contained in +subset: ro-eco +property_value: IAO:0000111 "contained in" xsd:string +property_value: IAO:0000116 "Containment is location not involving parthood, and arises only where some immaterial continuant is involved." xsd:string +property_value: IAO:0000116 "Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):" xsd:string +property_value: IAO:0000116 "Intended meaning:\ndomain: material entity\nrange: spatial region or site (immaterial continuant)\n " xsd:string +property_value: IAO:0000118 "contained_in" xsd:string +property_value: RO:0001900 RO:0001901 +domain: BFO:0000040 ! material entity +range: BFO:0000004 ! independent continuant +holds_over_chain: RO:0001025 BFO:0000050 +inverse_of: RO:0001019 ! contains + +[Typedef] +id: RO:0001019 +name: contains +subset: ro-eco +property_value: IAO:0000111 "contains" xsd:string +property_value: RO:0001900 RO:0001901 + +[Typedef] +id: RO:0001025 +name: located in +def: "a relation between two independent continuants, the target and the location, in which the target is entirely within the location" [] +property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:located_in xsd:string +property_value: IAO:0000111 "located in" xsd:string +property_value: IAO:0000112 "my brain is located in my head" xsd:string +property_value: IAO:0000112 "this rat is located in this cage" xsd:string +property_value: IAO:0000116 "Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus" xsd:string +property_value: IAO:0000116 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000118 "located_in" xsd:string +property_value: RO:0001900 RO:0001901 +domain: BFO:0000004 {http://purl.obolibrary.org/obo/IAO_0000116="This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation."} ! independent continuant +range: BFO:0000004 {http://purl.obolibrary.org/obo/IAO_0000116="This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation."} ! independent continuant +is_transitive: true + +[Typedef] +id: RO:0002013 +name: has regulatory component activity +def: "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B." [] +is_a: RO:0002017 ! has component activity +is_a: RO:0002334 ! regulated by +created_by: dos +creation_date: 2017-05-24T09:30:46Z + +[Typedef] +id: RO:0002014 +name: has negative regulatory component activity +def: "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B." [] +comment: By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'. +is_a: RO:0002013 ! has regulatory component activity +is_a: RO:0002335 ! negatively regulated by +created_by: dos +creation_date: 2017-05-24T09:31:01Z + +[Typedef] +id: RO:0002015 +name: has positive regulatory component activity +def: "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B." [] +comment: By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'. +is_a: RO:0002013 ! has regulatory component activity +is_a: RO:0002336 ! positively regulated by +created_by: dos +creation_date: 2017-05-24T09:31:17Z + +[Typedef] +id: RO:0002017 +name: has component activity +comment: A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B. +is_a: RO:0002018 ! has component process +created_by: dos +creation_date: 2017-05-24T09:44:33Z + +[Typedef] +id: RO:0002018 +name: has component process +def: "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] +is_a: RO:0002180 ! has component +created_by: dos +creation_date: 2017-05-24T09:49:21Z + +[Typedef] +id: RO:0002019 +name: has ligand +def: "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function." [GOC:dos] +domain: GO:0004872 ! receptor activity +is_a: RO:0002233 ! has input +created_by: dos +creation_date: 2017-07-19T17:30:36Z + +[Typedef] +id: RO:0002022 +is_a: RO:0002334 ! regulated by +inverse_of: RO:0002578 ! directly regulates + +[Typedef] +id: RO:0002023 +is_a: RO:0002022 +inverse_of: RO:0002630 ! directly negatively regulates + +[Typedef] +id: RO:0002024 +is_a: RO:0002022 +inverse_of: RO:0002629 ! directly positively regulates + +[Typedef] +id: RO:0002025 +is_functional: true +is_a: RO:0002017 ! has component activity +is_a: RO:0002211 ! regulates + +[Typedef] +id: RO:0002086 +name: ends after +comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) +subset: ro-eco +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +is_transitive: true +is_a: RO:0002222 ! temporally related to + +[Typedef] +id: RO:0002087 +name: immediately preceded by +comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000118 "starts_at_end_of" xsd:string +is_a: BFO:0000062 ! preceded by +inverse_of: RO:0002090 ! immediately precedes + +[Typedef] +id: RO:0002090 +name: immediately precedes +comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) +subset: ro-eco +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000118 "ends_at_start_of" xsd:string +property_value: IAO:0000118 "meets" xsd:string +property_value: RO:0002575 BFO:0000063 +is_a: BFO:0000063 ! precedes + +[Typedef] +id: RO:0002131 +name: overlaps +def: "x overlaps y if and only if there exists some z such that x has part z and z part of y" [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: RO:0001900 RO:0001901 +holds_over_chain: BFO:0000050 BFO:0000050 +holds_over_chain: BFO:0000051 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} +holds_over_chain: BFO:0000051 RO:0002131 +is_a: RO:0002323 ! mereotopologically related to +expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" [] + +[Typedef] +id: RO:0002180 +name: has component +def: "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." xsd:string +property_value: IAO:0000232 "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." xsd:string +property_value: RO:0001900 RO:0001901 +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:Componency +is_a: BFO:0000051 ! has part + +[Typedef] +id: RO:0002211 +name: regulates +def: "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2." [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000117 "David Hill" xsd:string +property_value: IAO:0000117 "Tanya Berardini" xsd:string +property_value: IAO:0000119 "GO" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000232 "Regulation precludes parthood; the regulatory process may not be within the regulated process." xsd:string +property_value: IAO:0000589 "regulates (processual)" xsd:string +property_value: IAO:0000600 "false" xsd:boolean +domain: BFO:0000015 ! process +range: BFO:0000015 ! process +holds_over_chain: RO:0002578 RO:0002578 +is_transitive: true +is_a: RO:0002411 ! causally upstream of +inverse_of: RO:0002334 ! regulated by + +[Typedef] +id: RO:0002212 +name: negatively regulates +def: "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2." [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "negatively regulates (process to process)" xsd:string +is_a: RO:0002211 ! regulates +is_a: RO:0002305 ! causally upstream of, negative effect +inverse_of: RO:0002335 ! negatively regulated by + +[Typedef] +id: RO:0002213 +name: positively regulates +def: "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "positively regulates (process to process)" xsd:string +holds_over_chain: RO:0002212 RO:0002212 +is_transitive: true +is_a: RO:0002211 ! regulates +is_a: RO:0002304 ! causally upstream of, positive effect +inverse_of: RO:0002336 ! positively regulated by + +[Typedef] +id: RO:0002215 +name: capable of +def: "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. " [] +subset: ro-eco +property_value: IAO:0000112 "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" xsd:string +property_value: IAO:0000112 "osteoclast SubClassOf 'capable of' some 'bone resorption'" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "has function realized in" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20123131 +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/21208450 +property_value: IAO:0000232 "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." xsd:string +domain: BFO:0000004 ! independent continuant +range: BFO:0000015 ! process +is_a: RO:0002216 ! capable of part of +expand_expression_to: "RO_0000053 some (RO_0000054 only ?Y)" [] + +[Typedef] +id: RO:0002216 +name: capable of part of +def: "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "has function in" xsd:string +holds_over_chain: RO:0002215 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} +is_a: RO:0002328 ! functionally related to +is_a: RO:0002500 ! causal agent in +expand_expression_to: "RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))" [] + +[Typedef] +id: RO:0002217 +name: actively participates in +def: "x actively participates in y if and only if x participates in y and x realizes some active role" [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "agent in" xsd:string +is_a: RO:0000056 ! participates in +inverse_of: RO:0002218 ! has active participant + +[Typedef] +id: RO:0002218 +name: has active participant +def: "x has participant y if and only if x realizes some active role that inheres in y" [] +subset: ro-eco +property_value: IAO:0000112 "'heart development' has active participant some Shh protein" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "This may be obsoleted and replaced by the original 'has agent' relation" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "has agent" xsd:string +is_a: RO:0000057 ! has participant + +[Typedef] +id: RO:0002222 +name: temporally related to +comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. +subset: ro-eco +property_value: http://purl.org/dc/elements/1.1/source https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 xsd:anyURI +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 https://en.wikipedia.org/wiki/Allen%27s_interval_algebra +property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent + +[Typedef] +id: RO:0002233 +name: has input +def: "p has direct input c iff c is a participant in p, c is present at the start of p, and the state of c is modified during p." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "consumes" xsd:string +domain: BFO:0000015 ! process +range: BFO:0000040 ! material entity +is_a: RO:0000057 ! has participant +inverse_of: RO:0002352 ! input of + +[Typedef] +id: RO:0002234 +name: has output +def: "p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "produces" xsd:string +is_a: RO:0000057 ! has participant +inverse_of: RO:0002353 ! output of + +[Typedef] +id: RO:0002263 +name: acts upstream of +def: "c involved in regulation of p if c enables 'p' and p' causally upstream of p" [] +holds_over_chain: RO:0002327 RO:0002411 +is_a: RO:0002264 ! acts upstream of or within + +[Typedef] +id: RO:0002264 +name: acts upstream of or within +def: "c acts upstream of or within p if c is enables 'p' and p' causally upstream of or within p" [] +synonym: "affects" RELATED [] +holds_over_chain: RO:0002327 RO:0002418 +is_a: RO:0002500 ! causal agent in + +[Typedef] +id: RO:0002304 +name: causally upstream of, positive effect +comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y +property_value: http://purl.org/dc/elements/1.1/creator "cjm" xsd:string +is_a: RO:0002411 ! causally upstream of + +[Typedef] +id: RO:0002305 +name: causally upstream of, negative effect +comment: holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y +property_value: http://purl.org/dc/elements/1.1/creator "cjm" xsd:string +is_a: RO:0002411 ! causally upstream of + +[Typedef] +id: RO:0002314 +name: inheres in part of +def: "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w." [] +property_value: IAO:0000116 "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20064205 +property_value: RO:0001900 RO:0001901 +holds_over_chain: RO:0000052 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} +is_a: RO:0002502 ! depends on +transitive_over: BFO:0000050 ! part of + +[Typedef] +id: RO:0002323 +name: mereotopologically related to +def: "A mereological relationship or a topological relationship" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" xsd:string +property_value: RO:0001900 RO:0001901 + +[Typedef] +id: RO:0002324 +name: developmentally related to +def: "A relationship that holds between entities participating in some developmental process (GO:0032502)" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" xsd:string + +[Typedef] +id: RO:0002326 +name: contributes to +property_value: IAO:0000112 "ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity." xsd:string +property_value: IAO:0000112 "eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to \"ribosome binding\". And all three are part_of an eIF2 complex" xsd:string +property_value: IAO:0000112 "Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity." xsd:string +property_value: IAO:0000116 "We would like to say\n\nif and only if\n exists c', p'\n c part_of c' and c' capable_of p\n and\n c capable_of p' and p' part_of p\nthen\n c contributes_to p\n\nHowever, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to xsd:string +property_value: IAO:0000232 "In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. " xsd:string +is_a: RO:0002216 ! capable of part of +is_a: RO:0002329 ! part of structure that is capable of + +[Typedef] +id: RO:0002327 +name: enables +property_value: IAO:0000112 "a particular instances of akt-2 enables some instance of protein kinase activity" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "catalyzes" xsd:string +property_value: IAO:0000118 "executes" xsd:string +property_value: IAO:0000118 "has" xsd:string +property_value: IAO:0000118 "is catalyzing" xsd:string +property_value: IAO:0000118 "is executing" xsd:string +property_value: IAO:0000232 "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." xsd:string +property_value: IAO:0000232 "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." xsd:string +is_a: RO:0002215 ! capable of +inverse_of: RO:0002333 ! enabled by +transitive_over: BFO:0000051 ! has part +transitive_over: RO:0002017 ! has component activity + +[Typedef] +id: RO:0002328 +name: functionally related to +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "This is a grouping relation that collects relations used for the purpose of connecting structure and function" xsd:string + +[Typedef] +id: RO:0002329 +name: part of structure that is capable of +def: "this relation holds between c and p when c is part of some c', and c' is capable of p." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "false" xsd:boolean +holds_over_chain: BFO:0000050 RO:0002215 {http://purl.obolibrary.org/obo/RO_0002581="true"} +is_a: RO:0002328 ! functionally related to + +[Typedef] +id: RO:0002331 +name: involved in +def: "c involved_in p if and only if c enables some process p', and p' is part of p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "actively involved in" xsd:string +property_value: IAO:0000118 "enables part of" xsd:string +holds_over_chain: RO:0002327 BFO:0000050 +is_a: RO:0002431 ! involved in or involved in regulation of +transitive_over: BFO:0000050 ! part of + +[Typedef] +id: RO:0002333 +name: enabled by +def: "inverse of enables" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002328 ! functionally related to + +[Typedef] +id: RO:0002334 +name: regulated by +def: "inverse of regulates" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000589 "regulated by (processual)" xsd:string +domain: BFO:0000015 ! process +range: BFO:0000015 ! process +is_transitive: true +is_a: RO:0002427 ! causally downstream of or within + +[Typedef] +id: RO:0002335 +name: negatively regulated by +def: "inverse of negatively regulates" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002334 ! regulated by + +[Typedef] +id: RO:0002336 +name: positively regulated by +def: "inverse of positively regulates" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002334 ! regulated by + +[Typedef] +id: RO:0002350 +name: member of +def: "is member of is a mereological relation between a item and a collection." [] +property_value: IAO:0000112 "An organism that is a member of a population of organisms" xsd:string +property_value: IAO:0000118 "is member of" xsd:string +property_value: IAO:0000118 "member part of" xsd:string +property_value: IAO:0000119 "SIO" xsd:string +property_value: RO:0001900 RO:0001901 +is_a: BFO:0000050 ! part of +inverse_of: RO:0002351 ! has member + +[Typedef] +id: RO:0002351 +name: has member +def: "has member is a mereological relation between a collection and an item." [] +property_value: IAO:0000119 "SIO" xsd:string +property_value: RO:0001900 RO:0001901 +is_a: BFO:0000051 ! has part + +[Typedef] +id: RO:0002352 +name: input of +def: "inverse of has input" [] +subset: ro-eco +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0000056 ! participates in +is_a: RO:0002328 ! functionally related to + +[Typedef] +id: RO:0002353 +name: output of +def: "inverse of has output" [] +subset: ro-eco +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0000056 ! participates in +is_a: RO:0002328 ! functionally related to + +[Typedef] +id: RO:0002354 +name: formed as result of +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002353 ! output of + +[Typedef] +id: RO:0002379 +name: spatially coextensive with +def: "x spatially_coextensive_with y if and inly if x and y have the same location" [] +property_value: IAO:0000112 "A lump of clay and a statue" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "This relation is added for formal completeness. It is unlikely to be used in many practical scenarios" xsd:string +is_a: RO:0002131 ! overlaps + +[Typedef] +id: RO:0002404 +name: causally downstream of +def: "inverse of upstream of" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: BFO:0000062 ! preceded by +is_a: RO:0002427 ! causally downstream of or within +inverse_of: RO:0002411 ! causally upstream of + +[Typedef] +id: RO:0002405 +name: immediately causally downstream of +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002087 ! immediately preceded by +is_a: RO:0002404 ! causally downstream of +inverse_of: RO:0002412 ! immediately causally upstream of + +[Typedef] +id: RO:0002410 +name: causally related to +def: "This relation groups causal relations between material entities and causal relations between processes" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000116 "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +is_a: RO:0002609 ! related via dependence to + +[Typedef] +id: RO:0002411 +name: causally upstream of +def: "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_transitive: true +is_a: BFO:0000063 ! precedes +is_a: RO:0002418 ! causally upstream of or within + +[Typedef] +id: RO:0002412 +name: immediately causally upstream of +def: "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q." [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: RO:0002575 RO:0002411 +is_a: RO:0002090 ! immediately precedes +is_a: RO:0002411 ! causally upstream of + +[Typedef] +id: RO:0002418 +name: causally upstream of or within +def: "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q." [] +synonym: "affects" RELATED [] +property_value: IAO:0000116 "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "influences (processual)" xsd:string +is_transitive: true +is_a: RO:0002501 ! causal relation between processes +inverse_of: RO:0002427 ! causally downstream of or within + +[Typedef] +id: RO:0002427 +name: causally downstream of or within +def: "inverse of causally upstream of or within" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +is_transitive: true +is_a: RO:0002501 ! causal relation between processes + +[Typedef] +id: RO:0002428 +name: involved in regulation of +def: "c involved in regulation of p if c is involved in some 'p' and p' regulates some p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +holds_over_chain: RO:0002327 RO:0002211 +holds_over_chain: RO:0002331 RO:0002211 +is_a: RO:0002263 ! acts upstream of +is_a: RO:0002431 ! involved in or involved in regulation of + +[Typedef] +id: RO:0002429 +name: involved in positive regulation of +property_value: IAO:0000117 "Chris Mungall" xsd:string +holds_over_chain: RO:0002327 RO:0002213 +holds_over_chain: RO:0002331 RO:0002213 +is_a: RO:0002428 ! involved in regulation of + +[Typedef] +id: RO:0002430 +name: involved in negative regulation of +property_value: IAO:0000117 "Chris Mungall" xsd:string +holds_over_chain: RO:0002327 RO:0002212 +holds_over_chain: RO:0002331 RO:0002212 +is_a: RO:0002428 ! involved in regulation of + +[Typedef] +id: RO:0002431 +name: involved in or involved in regulation of +def: "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "involved in or reguates" xsd:string +is_a: RO:0002264 ! acts upstream of or within +is_a: RO:0002328 ! functionally related to +is_a: RO:0002500 ! causal agent in + +[Typedef] +id: RO:0002432 +name: enables activity in +def: "c executes activity in d if and only if c enables p and p occurs_in d" [] +property_value: IAO:0000112 "A protein that enables activity in a cytosol." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "executes activity in" xsd:string +holds_over_chain: RO:0002327 BFO:0000066 {http://purl.obolibrary.org/obo/RO_0002581="true"} +is_a: RO:0002131 ! overlaps +is_a: RO:0002328 ! functionally related to + +[Typedef] +id: RO:0002434 +name: interacts with +def: "A relationship that holds between two entities in which the processes executed by the two entities are causally connected." [] +subset: ro-eco +synonym: "in pairwise interaction with" EXACT [] +property_value: http://xmlns.com/foaf/0.1/page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI +property_value: IAO:0000116 "Considering relabeling as 'pairwise interacts with'" xsd:anyURI +property_value: IAO:0000116 "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." xsd:string +property_value: seeAlso http://purl.obolibrary.org/obo/MI_0914 xsd:anyURI +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity +is_symmetric: true + +[Typedef] +id: RO:0002436 +name: molecularly interacts with +def: "An interaction relationship in which the two partners are molecular entities and are executing molecular processes that are directly causally connected." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "binds" xsd:string +property_value: IAO:0000118 "molecularly binds with" xsd:string +property_value: seeAlso ECO:0000353 +property_value: seeAlso http://purl.obolibrary.org/obo/MI_0915 xsd:anyURI +is_symmetric: true +is_a: RO:0002434 ! interacts with + +[Typedef] +id: RO:0002447 +name: phosphorylates +property_value: IAO:0000116 "Axiomatization to GO to be added later" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." xsd:string +is_a: RO:0002436 ! molecularly interacts with + +[Typedef] +id: RO:0002448 +name: molecularly controls +def: "Holds between molecular entities a and b when the execution of a activates or inhibits the activity of b" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002436 ! molecularly interacts with +is_a: RO:0002566 ! causally influences + +[Typedef] +id: RO:0002449 +name: molecularly decreases activity of +def: "Holds between molecules a and b if and only if a executes a process that directly diminishes a process executed by b." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "inhibits" xsd:string +is_a: RO:0002448 ! molecularly controls + +[Typedef] +id: RO:0002450 +name: molecularly increases activity of +def: "Holds between molecules a and b if and only if a executes a process that directly activates a process executed by b." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "activates" xsd:string +is_a: RO:0002448 ! molecularly controls + +[Typedef] +id: RO:0002464 +name: helper property +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." xsd:string + +[Typedef] +id: RO:0002473 +name: composed primarily of +def: "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y." [] +subset: ro-eco +property_value: IAO:0000112 "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/22293552 +property_value: RO:0001900 RO:0001901 +is_a: BFO:0000051 ! has part + +[Typedef] +id: RO:0002479 +name: has part that occurs in +def: "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c." [] +subset: ro-eco +property_value: IAO:0000117 "Chris Mungall" xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000004 ! independent continuant +holds_over_chain: BFO:0000051 BFO:0000066 {http://purl.obolibrary.org/obo/RO_0002581="true"} + +[Typedef] +id: RO:0002481 +name: is kinase activity +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002564 ! molecular interaction relation helper property + +[Typedef] +id: RO:0002500 +name: causal agent in +def: "A relationship between a material entity and a process where the material entity has some causal role that influences the process" [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +is_a: RO:0002595 ! causal relation between material entity and a process +inverse_of: RO:0002608 ! has causal agent + +[Typedef] +id: RO:0002501 +name: causal relation between processes +def: "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0002502 +name: depends on +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: seeAlso BFO:0000169 + +[Typedef] +id: RO:0002506 +name: causal relation between material entities +property_value: IAO:0000116 "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0002507 +name: determined by +def: "s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s." [] +subset: ro-eco +property_value: http://purl.org/dc/elements/1.1/creator "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/creator "Pier Buttigieg" xsd:string +property_value: IAO:0000112 "A coral reef environment is determined by a particular coral reef" xsd:string +property_value: IAO:0000116 "The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/24330602 +property_value: IAO:0000589 "determined by (system to material entity)" xsd:string +domain: RO:0002577 ! system +range: BFO:0000040 ! material entity +is_a: BFO:0000050 ! part of +is_a: RO:0002509 ! determined by part of +is_a: RO:0002559 ! causally influenced by +inverse_of: RO:0002508 ! determines + +[Typedef] +id: RO:0002508 +name: determines +def: "inverse of determined by" [] +subset: ro-eco +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000589 "determines (material entity to system)" xsd:string +is_a: RO:0002566 ! causally influences + +[Typedef] +id: RO:0002509 +name: determined by part of +def: "s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w." [] +subset: ro-eco +property_value: IAO:0000117 "Chris Mungall" xsd:string +domain: RO:0002577 ! system +range: BFO:0000040 ! material entity +holds_over_chain: RO:0002507 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} +is_a: RO:0002131 ! overlaps +is_a: RO:0002506 ! causal relation between material entities + +[Typedef] +id: RO:0002559 +name: causally influenced by +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "causally influenced by (material entity to material entity)" xsd:string +is_a: RO:0002506 ! causal relation between material entities +inverse_of: RO:0002566 ! causally influences + +[Typedef] +id: RO:0002563 +name: interaction relation helper property +property_value: http://xmlns.com/foaf/0.1/page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29 +is_a: RO:0002464 ! helper property + +[Typedef] +id: RO:0002564 +name: molecular interaction relation helper property +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002563 ! interaction relation helper property + +[Typedef] +id: RO:0002566 +name: causally influences +def: "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "causally influences (material entity to material entity)" xsd:string +is_a: RO:0002506 ! causal relation between material entities + +[Typedef] +id: RO:0002578 +name: directly regulates +def: "Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "directly regulates (processual)" xsd:string +property_value: RO:0002575 RO:0002211 +is_a: RO:0002211 ! regulates +is_a: RO:0002412 ! immediately causally upstream of + +[Typedef] +id: RO:0002584 +name: has part structure that is capable of +def: "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p" [] +property_value: IAO:0000112 "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +holds_over_chain: BFO:0000051 RO:0002215 +is_a: RO:0002328 ! functionally related to +is_a: RO:0002595 ! causal relation between material entity and a process + +[Typedef] +id: RO:0002595 +name: causal relation between material entity and a process +def: "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity." [] +property_value: IAO:0000116 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +domain: BFO:0000040 ! material entity +range: BFO:0000015 ! process +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0002596 +name: capable of regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a regulates p." [] +property_value: IAO:0000112 "pyrethroid -> growth" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +holds_over_chain: RO:0002215 RO:0002211 +is_a: RO:0002500 ! causal agent in + +[Typedef] +id: RO:0002597 +name: capable of negatively regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +holds_over_chain: RO:0002215 RO:0002212 +is_a: RO:0002596 ! capable of regulating + +[Typedef] +id: RO:0002598 +name: capable of positively regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p." [] +property_value: IAO:0000112 "renin -> arteriolar smooth muscle contraction" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +holds_over_chain: RO:0002215 RO:0002213 +is_a: RO:0002596 ! capable of regulating + +[Typedef] +id: RO:0002608 +name: has causal agent +def: "Inverse of 'causal agent in'" [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0002609 +name: related via dependence to +def: "A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes." [] +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string + +[Typedef] +id: RO:0002629 +name: directly positively regulates +def: "Process(P1) directly regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "directly positively regulates (process to process)" xsd:string +is_a: RO:0002213 ! positively regulates +is_a: RO:0002578 ! directly regulates + +[Typedef] +id: RO:0002630 +name: directly negatively regulates +def: "Process(P1) directly regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "directly negatively regulates (process to process)" xsd:string +is_a: RO:0002212 ! negatively regulates +is_a: RO:0002578 ! directly regulates + +[Typedef] +id: RO:0003000 +name: produces +def: "a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix." [] +comment: Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue. +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Melissa Haendel" xsd:string +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity +inverse_of: RO:0003001 ! produced by + +[Typedef] +id: RO:0003001 +name: produced by +def: "a produced_by b iff some process that occurs_in b has_output a." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Melissa Haendel" xsd:string +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity + +[Typedef] +id: results_in_developmental_progression_of +name: results in developmental progression of +def: "p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss)." [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: seeAlso Ontology:extensions +domain: GO:0008150 ! biological_process +range: CARO:0000003 ! anatomical structure +is_a: RO:0002324 ! developmentally related to + +[Typedef] +id: results_in_formation_of +name: results in formation of +property_value: IAO:0000112 "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists." xsd:string +property_value: IAO:0000112 "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 GOC:mtg_berkeley_2013 xsd:string +is_a: results_in_developmental_progression_of ! results in developmental progression of +is_a: RO:0002234 ! has output +inverse_of: RO:0002354 ! formed as result of diff --git a/imports/pco_import.owl b/imports/pco_import.owl index 176ce3cf..20946f19 100644 --- a/imports/pco_import.owl +++ b/imports/pco_import.owl @@ -1,19 +1,29 @@ - - + xmlns:foaf="http://xmlns.com/foaf/0.1/" + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" + xmlns:swrl="http://www.w3.org/2003/11/swrl#" + xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#" + xmlns:swrlb="http://www.w3.org/2003/11/swrlb#" + xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" + xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> + + + @@ -21,101 +31,4292 @@ - + - - entity - + + editor preferred term + + The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English) + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + editor preferred term + - + - - - - continuant + + example + + A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + example of usage + + + + + + + + has curation status + PERSON:Alan Ruttenberg + PERSON:Bill Bug + PERSON:Melanie Courtot + OBI_0000281 + has curation status + + + + + + + + definition + + The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions. + 2012-04-05: +Barry Smith + +The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. + +Can you fix to something like: + +A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. + +Alan Ruttenberg + +Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. + +On the specifics of the proposed definition: + +We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. + +Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. + +We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + definition + definition + + + + + + + + editor note + + An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology. + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obfoundry.org/obo/obi> + editor note + + + + + + + + term editor + + Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people + 20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115. + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + term editor + + + + + + + + alternative term + + An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent) + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + alternative term + + + + + + + + definition source + + formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007 + PERSON:Daniel Schober + Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + definition source + + + + + + + + has obsolescence reason + Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification. + PERSON:Alan Ruttenberg + PERSON:Melanie Courtot + has obsolescence reason + + + + + + + + + + + + + + imported from + + For external terms/classes, the ontology from which the term was imported + PERSON:Alan Ruttenberg + PERSON:Melanie Courtot + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + imported from + + + + + + + + + + + + + + OBO foundry unique label + + An alternative name for a class or property which is unique across the OBO Foundry. + The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools . + PERSON:Alan Ruttenberg + PERSON:Bjoern Peters + PERSON:Chris Mungall + PERSON:Melanie Courtot + GROUP:OBO Foundry <http://obofoundry.org/> + OBO foundry unique label + + + + + + + + + + + + + + + + + + + + term replaced by + + Add as annotation triples in the granting ontology + Use on obsolete terms, relating the term to another term that can be used as a substitute + Person:Alan Ruttenberg + Person:Alan Ruttenberg + term replaced by + + + + + + + + + + + + + + + + + + + + An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context. + temporal interpretation + https://github.com/oborel/obo-relations/wiki/ROAndTime + + + + + + + + + + + + + + + + + + + + + + If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL + is a defining property chain axiom + + + + + + + + If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R. + is a defining property chain axiom where second argument is reflexive + + + + + + + + 'anterior end of organism' is-opposite-of 'posterior end of organism' + 'increase in temperature' is-opposite-of 'decrease in temperature' + x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). + is opposite of + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + subset_property + + + + + + + + + + + + + + + + + + + + has_broad_synonym + + + + + + + + database_cross_reference + + + + + + + + has_exact_synonym + + + + + + + + + + + + + + has_obo_format_version + + + + + + + + has_related_synonym + + + + + + + + + + + + + + + + + + + + in_subset + + + + + + + + shorthand + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + is part of + my brain is part of my body (continuant parthood, two material entities) + my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity) + this day is part of this year (occurrent parthood) + a core relation that holds between a part and its whole + Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other. + Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) + +A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'. + part_of + + part of + + + http://www.obofoundry.org/ro/#OBO_REL:part_of + + + + + + + + + + has part + my body has part my brain (continuant parthood, two material entities) + my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity) + this year has part this day (occurrent parthood) + a core relation that holds between a whole and its part + Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part. + Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) + +A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'. + has_part + + has part + + + + + + + + + + + + + + + + + preceded by + x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. + An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other. + is preceded by + preceded_by + http://www.obofoundry.org/ro/#OBO_REL:preceded_by + + preceded by + + + + + + + + + + + + + + + + precedes + x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. + + precedes + + + + + + + + + + + + + + + + + + + occurs in + b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t + occurs_in + unfolds in + unfolds_in + Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant + + occurs in + + + + + + + + site of + [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t + Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant + + contains process + + + + + + + + + + inheres in + this fragility inheres in this vase + this red color inheres in this apple + a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence + A dependent inheres in its bearer at all times for which the dependent exists. + inheres_in + + inheres in + + + + + + + + + bearer of + this apple is bearer of this red color + this vase is bearer of this fragility + a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence + A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist. + bearer_of + is bearer of + + bearer of + + + + + + + + + + + participates in + this blood clot participates in this blood coagulation + this input material (or this output material) participates in this process + this investigator participates in this investigation + a relation between a continuant and a process, in which the continuant is somehow involved in the process + participates_in + participates in + + + + + + + + + + + + + + has participant + this blood coagulation has participant this blood clot + this investigation has participant this investigator + this process has participant this input material (or this output material) + a relation between a process and a continuant, in which the continuant is somehow involved in the process + Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time. + has_participant + http://www.obofoundry.org/ro/#OBO_REL:has_participant + has participant + + + + + + + + + + this red color is a quality of this apple + a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence + A quality inheres in its bearer at all times for which the quality exists. + is quality of + quality_of + quality of + + + + + + + + + + this apple has quality this red color + a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence + A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist. + has_quality + has quality + + + + + + + + + + is location of + my head is the location of my brain + this cage is the location of this rat + a relation between two independent continuants, the location and the target, in which the target is entirely within the location + Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + location_of + + location of + + + + + + + + + + + + + + + contained in + Containment is location not involving parthood, and arises only where some immaterial continuant is involved. + Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition): + Intended meaning: +domain: material entity +range: spatial region or site (immaterial continuant) + + contained_in + + + contained in + + + + + + + + contains + + + contains + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + located in + my brain is located in my head + this rat is located in this cage + a relation between two independent continuants, the target and the location, in which the target is entirely within the location + Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus + Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + located_in + + http://www.obofoundry.org/ro/#OBO_REL:located_in + located in + + + + + + This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation. + + + + + + This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation. + + + + + + + + + + A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B. + dos + 2017-05-24T09:30:46Z + has regulatory component activity + + + + + + + + + + A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B. + dos + 2017-05-24T09:31:01Z + By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'. + has negative regulatory component activity + + + + + + + + + + A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B. + dos + 2017-05-24T09:31:17Z + By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'. + has positive regulatory component activity + + + + + + + + + dos + 2017-05-24T09:44:33Z + A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B. + has component activity + + + + + + + + + w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type. + dos + 2017-05-24T09:49:21Z + has component process + + + + + + + + + + A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function. + dos + 2017-07-19T17:30:36Z + has ligand + + + + + A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function. + GOC:dos + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + David Osumi-Sutherland + + X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) + ends after + + + + + + + + + + David Osumi-Sutherland + starts_at_end_of + X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) + immediately preceded by + + + + + + + + + David Osumi-Sutherland + ends_at_start_of + meets + + + X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) + immediately precedes + + + + + + + + + + + + + + + + + + + + + + x overlaps y if and only if there exists some z such that x has part z and z part of y + http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y) + + + overlaps + + + + + + + + + true + + + + + + + + + + w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type. + The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity. + For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit. + + + has component + + + + + + + + + + + + + + + + + + + process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2. + We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit + Chris Mungall + David Hill + Tanya Berardini + + GO + Regulation precludes parthood; the regulatory process may not be within the regulated process. + regulates (processual) + false + regulates + + + + + + + + + + + + Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2. + Chris Mungall + + negatively regulates (process to process) + negatively regulates + + + + + + + + + + + + + + + + Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2. + Chris Mungall + + positively regulates (process to process) + positively regulates + + + + + + + + + + + mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974) + osteoclast SubClassOf 'capable of' some 'bone resorption' + + A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. + Chris Mungall + has function realized in + + + For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)". + RO_0000053 some (RO_0000054 only ?Y) + + capable of + + + + + + + + + + + + + + + c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p. + Chris Mungall + has function in + RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y)) + capable of part of + + + + + + + + + true + + + + + + + + + + + x actively participates in y if and only if x participates in y and x realizes some active role + Chris Mungall + agent in + actively participates in + + + + + + + + + 'heart development' has active participant some Shh protein + + x has participant y if and only if x realizes some active role that inheres in y + This may be obsoleted and replaced by the original 'has agent' relation + Chris Mungall + has agent + + has active participant + + + + + + + + + + + Chris Mungall + + Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends. + https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 + + A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. + temporally related to + + + + + + + + + + + + + p has direct input c iff c is a participant in p, c is present at the start of p, and the state of c is modified during p. + Chris Mungall + consumes + + has input + + + + + + + + + + + p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p. + Chris Mungall + produces + + has output + + + + + + + + + + + + + c involved in regulation of p if c enables 'p' and p' causally upstream of p + acts upstream of + + + + + + + + + + + + + c acts upstream of or within p if c is enables 'p' and p' causally upstream of or within p + affects + acts upstream of or within + + + + + + + + + + + + p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss). + This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint. + Chris Mungall + results_in_developmental_progression_of + results in developmental progression of + + + + + + + + + + + + an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists. + every "endocardial cushion formation" (GO:0003272) results_in_formation_of some "endocardial cushion" (UBERON:0002062) + + Chris Mungall + GOC:mtg_berkeley_2013 + results_in_formation_of + results in formation of + + + + + + + + + cjm + holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y + causally upstream of, positive effect + + + + + + + + + cjm + holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y + causally upstream of, negative effect + + + + + + + + + + + + + + + + + q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w. + Because part_of is transitive, inheres in is a sub-relation of inheres in part of + Chris Mungall + + + inheres in part of + + + + + + + + + true + + + + + + + + A mereological relationship or a topological relationship + Chris Mungall + Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships + + mereotopologically related to + + + + + + + + A relationship that holds between entities participating in some developmental process (GO:0032502) + Chris Mungall + Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development + developmentally related to + + + + + + + + + + ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity. + Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity. + eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to "ribosome binding". And all three are part_of an eIF2 complex + We would like to say + +if and only if + exists c', p' + c part_of c' and c' capable_of p + and + c capable_of p' and p' part_of p +then + c contributes_to p + +However, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction. + Chris Mungall + http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to + In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. + contributes to + + + + + + + + + + + + + + + + + + a particular instances of akt-2 enables some instance of protein kinase activity + Chris Mungall + catalyzes + executes + has + is catalyzing + is executing + This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized. + This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time. + enables + + + + + + + + Chris Mungall + This is a grouping relation that collects relations used for the purpose of connecting structure and function + functionally related to + + + + + + + + + + + + + this relation holds between c and p when c is part of some c', and c' is capable of p. + Chris Mungall + false + part of structure that is capable of + + + + + + + + + true + + + + + + + + + + + + + + + + + c involved_in p if and only if c enables some process p', and p' is part of p + Chris Mungall + actively involved in + enables part of + involved in + + + + + + + + + + + + + + inverse of enables + Chris Mungall + enabled by + + + + + + + + + + + + inverse of regulates + Chris Mungall + regulated by (processual) + + regulated by + + + + + + + + + inverse of negatively regulates + Chris Mungall + + negatively regulated by + + + + + + + + + inverse of positively regulates + Chris Mungall + + positively regulated by + + + + + + + + + + An organism that is a member of a population of organisms + is member of is a mereological relation between a item and a collection. + is member of + member part of + SIO + + member of + + + + + + + + + + has member is a mereological relation between a collection and an item. + SIO + + has member + + + + + + + + + + inverse of has input + Chris Mungall + + + input of + + + + + + + + + + inverse of has output + Chris Mungall + + + output of + + + + + + + + + Chris Mungall + formed as result of + + + + + + + + + + + + + + + A lump of clay and a statue + x spatially_coextensive_with y if and inly if x and y have the same location + Chris Mungall + This relation is added for formal completeness. It is unlikely to be used in many practical scenarios + spatially coextensive with + + + + + + + + + + + + inverse of upstream of + Chris Mungall + causally downstream of + + + + + + + + + + + + Chris Mungall + immediately causally downstream of + + + + + + + + + + This relation groups causal relations between material entities and causal relations between processes + This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. + +To define causal relations in an activity-flow type network, we make use of 3 primitives: + + * Temporal: how do the intervals of the two occurrents relate? + * Is the causal relation regulatory? + * Is the influence positive or negative + +The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. + +For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. + +For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. + +Each of these 3 primitives can be composed to yield a cross-product of different relation types. + Chris Mungall + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causally related to + + + + + + + + + + + + p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain + Chris Mungall + causally upstream of + + + + + + + + + + + p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q. + Chris Mungall + + immediately causally upstream of + + + + + + + + + + + p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q. + We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2 + Chris Mungall + influences (processual) + affects + causally upstream of or within + + + + + + + + + + inverse of causally upstream of or within + Chris Mungall + + + causally downstream of or within + + + + + + + + + + + + + + + + + + c involved in regulation of p if c is involved in some 'p' and p' regulates some p + Chris Mungall + involved in regulation of + + + + + + + + + + + + + + + + + Chris Mungall + involved in positive regulation of + + + + + + + + + + + + + + + + + Chris Mungall + involved in negative regulation of + + + + + + + + + + + c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p + Chris Mungall + involved in or reguates + involved in or involved in regulation of + + + + + + + + + + + + + + A protein that enables activity in a cytosol. + c executes activity in d if and only if c enables p and p occurs_in d + Chris Mungall + executes activity in + enables activity in + + + + + + + + + true + + + + + + + + + + + A relationship that holds between two entities in which the processes executed by the two entities are causally connected. + Considering relabeling as 'pairwise interacts with' + This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact. + Chris Mungall + Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules. + in pairwise interaction with + + interacts with + http://purl.obolibrary.org/obo/MI_0914 + https://github.com/oborel/obo-relations/wiki/InteractionRelations + + + + + + + + + + An interaction relationship in which the two partners are molecular entities and are executing molecular processes that are directly causally connected. + Chris Mungall + binds + molecularly binds with + molecularly interacts with + + http://purl.obolibrary.org/obo/MI_0915 + + + + + + + + + Axiomatization to GO to be added later + Chris Mungall + An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y. + phosphorylates + + + + + + + + + + + + + + + Holds between molecular entities a and b when the execution of a activates or inhibits the activity of b + Chris Mungall + molecularly controls + + + + + + + + + + + + + + Holds between molecules a and b if and only if a executes a process that directly diminishes a process executed by b. + Chris Mungall + inhibits + molecularly decreases activity of + + + + + + + + + + + + + + Holds between molecules a and b if and only if a executes a process that directly activates a process executed by b. + Chris Mungall + activates + molecularly increases activity of + + + + + + + + + Chris Mungall + This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning. + helper property + + + + + + + + + 'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate' + x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y. + Chris Mungall + + + + composed primarily of + + + + + + + + + + + + + + p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c. + Chris Mungall + + has part that occurs in + + + + + + + + + true + + + + + + + + + Chris Mungall + is kinase activity + + + + + + + + + + A relationship between a material entity and a process where the material entity has some causal role that influences the process + + causal agent in + + + + + + + + + + + p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q. + Chris Mungall + + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causal relation between processes + + + + + + + + Chris Mungall + depends on + + + + + + + + + + + + The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch + Chris Mungall + + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causal relation between material entities + + + + + + + + + + + + + + A coral reef environment is determined by a particular coral reef + s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s. + The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future + Chris Mungall + + determined by (system to material entity) + Chris Mungall + Pier Buttigieg + + determined by + + + + + + + + + inverse of determined by + Chris Mungall + determines (material entity to system) + + + determines + + + + + + + + + + + + + + + + s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w. + Chris Mungall + + determined by part of + + + + + + + + + true + + + + + + + + + + Chris Mungall + + causally influenced by (material entity to material entity) + causally influenced by + + + + + + + + + Chris Mungall + interaction relation helper property + + https://github.com/oborel/obo-relations/wiki/InteractionRelations + + + + + + + + + Chris Mungall + molecular interaction relation helper property + + + + + + + + + + + + + + + + + + + Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b + Chris Mungall + + causally influences (material entity to material entity) + causally influences + + + + + + + + + + Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2. + Chris Mungall + + directly regulates (processual) + + directly regulates + + + + + + + + + + + + + + gland SubClassOf 'has part structure that is capable of' some 'secretion by cell' + s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p + Chris Mungall + has part structure that is capable of + + + + + + + + + + + A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + Chris Mungall + + causal relation between material entity and a process + + + + + + + + + + + + + pyrethroid -> growth + Holds between c and p if and only if c is capable of some activity a, and a regulates p. + + capable of regulating + + + + + + + + + + + + + Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p. + + capable of negatively regulating + + + + + + + + + + + + + renin -> arteriolar smooth muscle contraction + Holds between c and p if and only if c is capable of some activity a, and a positively regulates p. + + capable of positively regulating + + + + + + + + + Inverse of 'causal agent in' + + has causal agent + + + + + + + + A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + related via dependence to + + + + + + + + + + Process(P1) directly regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2. + + directly positively regulates (process to process) + directly positively regulates + + + + + + + + + + Process(P1) directly regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2. + + directly negatively regulates (process to process) + directly negatively regulates + + + + + + + + + + + + + + + + + + a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix. + Melissa Haendel + + Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue. + produces + + + + + + + + + + + a produced_by b iff some process that occurs_in b has_output a. + Melissa Haendel + + produced by + + + + + + + + + + + + + entity + + + + + + + + + + + + + + + + An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts. + continuant + + + + + + + + + + + + + + + An entity that has temporal parts and that happens, unfolds or develops through time. + occurrent + + + + + + + + + + + A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything. + b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]) + independent continuant + + + + + b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]) + + + + + + + + + + spatial region + + + + + + + + + An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. + p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) + process + + + + + p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) + + + + + + + + + + quality + + + + + + + + + + A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same. + b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n &gt; 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i &lt; j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004]) + b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]) + specifically dependent continuant + + + + + b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]) + + + + + + + + + + object aggregate + + + + + + + + + site + + + + + + + + + A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time. + b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001]) + + generically dependent continuant + + + + + + + + + + + + + + + + An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. + material entity + + + + + + + + + + + + + + + immaterial entity + + + + + + + + + + anatomical structure + + + + + + + + + + material anatomical entity + + + + + + + + + + cell part (CARO) + cell part + + + + + + + + + Material anatomical entity that is a member of an individual species or is a viral or viroid particle. + organism or virus + Melissa Haendel + 9/18/11 + organism or virus or viroid + + + + + + + + + + cell + + + + + + + + + + + + + + + + + + + + + + + + + + A material entity which determines an environmental system. + environmental feature + + + + + A material entity which determines an environmental system. + DOI:10.1186/2041-1480-4-43 + NM:nm + ORCID:0000-0002-4366-3088 + + + + + + + + + A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system. + portion of environmental material + environmental material + + + + + A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system. + DOI:10.1186/2041-1480-4-43 + MA:ma + ORCID:0000-0002-4366-3088 + URL:http://ontology.buffalo.edu/smith/articles/niches.html + + + + + + + + + A system which has the disposition to environ one or more material entities. + environment + environmental system + + + + + A system which has the disposition to environ one or more material entities. + DOI:10.1186/2041-1480-4-43 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An anthropogenic environment is an environmental system which is the product of human activity. + anthropogenic environment + + + + + + + + + + + + + + + + + + + + + + + + An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition. + natural environment + + + + + An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition. + https://en.wikipedia.org/wiki/Anthropization + https://en.wikipedia.org/wiki/Natural_environment + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A process during which a natural environmental system is altered by human action. + anthropization + anthropisation + + + + + A process during which a natural environmental system is altered by human action. + https://en.wikipedia.org/wiki/Anthropization + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system which is determined by materials bearing roughly homogeneous qualities. + environmental system determined by a quality + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system within which an environmental material strongly influences the system's composition and properties. + environmental system determined by a material + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system which is determined by a living organism. + host-associated environment + environmental system determined by an organism + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system determined by an animal. + animal environment + Metazoan-associated environment + animal-associated environment + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system determined by part of a living or dead animal, or a whole small animal. + environment associated with an animal part or small animal + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system determined by part of a living or dead plant, or a whole small plant. + environment associated with a plant part or small plant + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system which includes both living and non-living components. + ecosystem + + + + + An environmental system which includes both living and non-living components. + https://en.wikipedia.org/wiki/Ecosystem + + + + + + + + + + + + + + + + + + + + + + + A process in which includes the components of an environmental system as participants. + environmental system process + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental process which is driven by the action of humans. + anthropogenic environmental process + + + + + + + + + molecular process + molecular_function + + + + + + + + + catalytic activity + + + + + + + + receptor activity + + + + + + + + + + nucleus + + + + + + + + + Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. + biological process + physiological process + single organism process + single-organism process + biological_process + + + + + Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. + GOC:go_curators + GOC:isa_complete + + + + + + + + + + + + true + + + kinase activity + + + + + + + + + transferase activity + + + + + + + + + transferase activity, transferring phosphorus-containing groups + + + + + + + + + + cell projection + + + + + + + + + + cell part + + + + + + + + + + + + + + + data item + + + + + + + + + information content entity + + + + + + + + + + + + + + + + + + + + + + + + curation status specification + + The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. + Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting) + PERSON:Bill Bug + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + OBI_0000266 + curation status specification + + + + + + + + + data about an ontology part is a data item about a part of an ontology, for example a term + Person:Alan Ruttenberg + data about an ontology part + + + + + + + + + + + + + + + + + + + + obsolescence reason specification + + The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. + The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology. + PERSON: Alan Ruttenberg + PERSON: Melanie Courtot + obsolescence reason specification + + + + + + + + + + + + + + + + + + The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are "natural kinds" and the latter arbitrary collections of entities. + A denotator type indicates how a term should be interpreted from an ontological perspective. + Alan Ruttenberg + Barry Smith, Werner Ceusters + denotator type + + + + + + + + + all + root + + + + + all + + + + + + all + + + + + + + + + + Teleostomi + + + + + + + + + bony vertebrates + Euteleostomi + + + + + bony vertebrates + + + + + + + + + + biota + cellular organisms + + + + + biota + + + + + + biota + + + + + + + + + + Dipnotetrapodomorpha + + + + + + + + + Boreotheria + Boreoeutheria + + + + + Boreotheria + + + + + + + + + + Homo/Pan/Gorilla group + Homininae + + + + + Homo/Pan/Gorilla group + + + + + + + + + + eucaryotes + eukaryotes + Eucarya + Eucaryotae + Eukarya + Eukaryotae + eukaryotes + Eukaryota + + + + + eucaryotes + + + + + + eucaryotes + + + + + + eukaryotes + + + + + + eukaryotes + + + + + + Eucarya + + + + + + Eucarya + + + + + + Eucaryotae + + + + + + Eucaryotae + + + + + + Eukarya + + + + + + Eukarya + + + + + + Eukaryotae + + + + + + Eukaryotae + + + + + + eukaryotes + + + + + + eukaryotes + + + + + + + + + + Euarchontoglires + + + + + + + + + Anthropoidea + Simiiformes + + + + + Anthropoidea + + + + + + + + + + ape + apes + Hominoidea + + + + + ape + + + + + + apes + + + + + + + + + + tetrapods + Tetrapoda + + + + + tetrapods + + + + + + + + + + amniotes + Amniota + + + + + amniotes + + + + + + + + + + Theria + Theria <Mammalia> + + + + + Theria + + + + + + + + + + Fungi/Metazoa group + opisthokonts + Opisthokonta + + + + + Fungi/Metazoa group + + + + + + opisthokonts + + + + + + + + + + metazoans + multicellular animals + Animalia + animals + Metazoa + + + + + metazoans + + + + + + multicellular animals + + + + + + Animalia + + + + + + animals + + + + + + + + + + Bilateria + + + + + + + + + deuterostomes + Deuterostomia + + + + + deuterostomes + + + + + + + + + + Haplorrhini + + + + + + + + + mammals + mammals + Mammalia + + + + + mammals + + + + + + mammals + + + + + + + + + + Eumetazoa + + + + + + + + + chordates + chordates + Chordata + + + + + chordates + + + + + + chordates + + + + + + + + + + Vertebrata + vertebrates + vertebrates + Vertebrata <Metazoa> + + + + + Vertebrata + + + + + + vertebrates + + + + + + vertebrates + + + + + + + + + + Gnathostomata + jawed vertebrates + Gnathostomata <vertebrate> + + + + + Gnathostomata + + + + + + jawed vertebrates + + + + + + + + + + Sarcopterygii + + + + + + + + + Craniata + Craniata <chordata> + + + + + Craniata + + + + + + + + + + eutherian mammals + placental mammals + placentals + Placentalia + placentals + Eutheria + + + + + eutherian mammals + + + + + + placental mammals + + + + + + placentals + + + + + + Placentalia + + + + + + placentals + + + + + + + + + + primate + Primata + primates + Primates + + + + + primate + + + + + + Primata + + + + + + primates + + + + + + + + + + Catarrhini + + + + + + + + + great apes + Pongidae + Hominidae + + + + + great apes + + + + + + Pongidae + + + + + + + + + + humans + Homo + + + + + humans + + + + + + + + + + human + man + humans + Homo sapiens + + + + + human + + + + + + man + + + + + + + + + + A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities + quality (PATO) + trait + quality + + + + + A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities + PATOC:GVG + + + + + + + + + A composite chromatic quality composed of hue, saturation and intensity parts. + colour + relative color + color + + + + + A composite chromatic quality composed of hue, saturation and intensity parts. + PATOC:GVG + + + + + + + + + + A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. + morphology + + + + + + + + + shape + + + + + + + + + qualitative + + + + + + + + + A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. + deviation(from_normal) + + + + + + + + + A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. + size + + + + + + + + + structure + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time. + rate + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time. + PATOC:melissa + + + + + + + + + A color hue with high wavelength of the long-wave end of the visible spectrum, evoked in the human observer by radiant energy with wavelengths of approximately 630 to 750 nanometers. + red + + + + + A color hue with high wavelength of the long-wave end of the visible spectrum, evoked in the human observer by radiant energy with wavelengths of approximately 630 to 750 nanometers. + Dictionary:http://dictionary.reference.com/ + + + + + + + + + branched + + + + + + + + + + A size quality which is relatively low. + hypoplasia + underdeveloped + reduced + small + tiny + decreased size + + + + + + + + + A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. + relational physical quality + physical quality + + + + + A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. + PATOC:GVG + + + + + + + + + linear + + + + + + + + + A quality which inheres in an process. + quality of a process + quality of occurrent + quality of process + relational quality of occurrent + process quality + + + + + A quality which inheres in an process. + PATOC:GVG + + + + + + + + + A quality which inheres in a continuant. + monadic quality of a continuant + multiply inhering quality of a physical entity + quality of a continuant + quality of a single physical entity + quality of an object + quality of continuant + monadic quality of an object + monadic quality of continuant + physical object quality + + + + + A quality which inheres in a continuant. + PATOC:GVG + + + + + + + + + A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation. + electromagnetic (EM) radiation quality + + + + + A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation. + Wikipedia:http://en.wikipedia.org/wiki/Electromagnetic_radiation + + + + + + + + + An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light. + optical quality + + + + An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light. + PATOC:GVG + - + - - - occurrent + + + A biological sex quality inhering in a population of multiple sexes. + mixed sex + + + + A biological sex quality inhering in a population of multiple sexes. + MGED:MGED + - + - - - - independent continuant + + + A quality inhering in a population by virtue of the proportion of its members that are ill at a given time. + morbidity + + + + A quality inhering in a population by virtue of the proportion of its members that are ill at a given time. + PATOC:GVG + - + - - - specifically dependent continuant + + + A quality that inheres in an bearer by virtue of how that bearer interacts with radiation. + radiation quality + + + + A quality that inheres in an bearer by virtue of how that bearer interacts with radiation. + PATOC:GVG + - + - - - object aggregate + + + A quality that inheres in an entire population or part of a population. + population quality + + + + A quality that inheres in an entire population or part of a population. + PATOC:GVG + - + - - - material entity + + + branchiness - + - - - organism or virus or viroid + + + physical quality of a process - + - - quality + + + laminar - + - - - physical object quality + + + A quality that has a value that is decreased compared to normal or average. + decreased quality - + - + - population quality + + A quality of an object that has a value that is decreased compared to normal or average. + decreased object quality @@ -123,8 +4324,37 @@ + + + + + + + + + + 2 + + + + + + + + + + + + Examples include: population, community, species (meaning the collection of organisms that makes up a species, not the taxonomic rank), and family. + + A material entity that consists of two or more organisms, viruses, or viroids. + A material entity that consists of two or more organisms, viruses, or viroids. + group of organism + organism collection + May be of the same or different species. + collection of organisms collection of organisms @@ -134,30 +4364,244 @@ + + This a general term that can include every organism of a species living in an area or any subset of them. Subclasses can be more specific as needed. + + A collection of organisms, all of the same species, that live in the same place. + ISBN:0878932739 + It is sometimes difficult to define the physical boundaries of a population. In the case of sexually reproducing organisms, the individuals within a population have the potential to reproduce with one another during the course of their lifetimes. 'Community', as often used to describe a group of humans, is a type of population. + +Classes for population already exist in IDO ('organism population', IDO_0000509) and OBI ('population', OBI_0000181). The definitions should be standardized across OBO Foundry ontologies and only one term used. population of organisms + + + + + + + + + + 2 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A community of at least two different species, living in a particular area. Must have at least two populations of different species as members. + Not sure if the equivalancy axiom specifies that both populations are located in the same site. + multispecies community + ISBN:0865423504 + Ecological community is defined broadly here, but includes both ecological interactions (inherited from parent term community) and spatial co-existence. It may be used to describe every organisms living in an area, but is often used to refer only to organisms of a particular taxon or guild (e.g., the plant community, the insect community, the herbivore community). The word community, as it often used to describe a group of humans living together, is a type of single-species collection of organisms, not an ecological community. + ecological community + + + + - + + + + + + + + + + + + + + + + + + + A quality that inheres in a biological population. + See Chris's comments on population qualities at: http://code.google.com/p/popcomm-ontology/issues/detail?id=4. These may not belong under BFO:quality. May be better to call them population characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2. + Includes qualities like population size, population growth rate, carrying capacity, immigration rate, emigration rate, fecundity, and death rate. A population quality may depend on the qualities of individual organisms in the population, but cannot be measured or described for a single organism. This term may be replaced by a PATO term. quality of a population + + + + + + + + + + + + + + + + + + + + + + + A quality that inheres in a community. + These may not belong under BFO:quality. May be better to call them community characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2. + Includes qualities like diversity, species richness, stability, resilience, community structure, number of trophic levels. A community quality may depend on the qualities of individual organism in the community, but cannot be measured or described for a single individual. + quality of an ecological community + + + + + + + + + + A collection of organisms that has as parts every organism of given species and no organisms of any other species. + At the moment there is no way to specify in an OWL axiom that the collection includes every individual of a species. This should be added, if possible. + This term is neutral with respect to which organisms are included in a species. Membership will depend on the species concept and the taxonomic assertions used to define the species. These criteria must be specified by the user. + species as a collection of organisms + + + + + + + + + + + + + + + + + 1 + + + + + + + 2 + + + + + + + A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species. + collection of organisms of the same species single-species collection of organisms + + + + + + + + + + + + + + 2 + + + + + + + + + + + + + + A collection of organisms of the same species that has as members only humans. + human community + human population + collection of humans + + + + + + + + + + A collection of organisms of the same species whose members are all either genealogically related to each other or have mated with each other. + Biological or social relations are covered by RO_0002437 (biotically interacts with), but that relations does provide an easy way to specify that two entities are interacting with each other (participating in the same interaction). Until that axiom is specified, the logical definition of this term is incomplete. + These relations can include shared values, occupying the same spatial regkion. A community be be a single species collection of organsisms (as in a human community, which is also a type of population) or a or multi-species collection of organisms (as in an ecological community). + community + + + + + + + + + + A collection of organisms that consists of two or more organisms from at least two species. + Need to add axiom to specify that it has at a mimum members of two different species, but not sure how to specify that. Can't say "('has member' only ('member of' min 2 'species as a collection of organisms'))". + + multi-species collection of organisms + + + + @@ -170,11 +4614,1374 @@ + + A material entity that is one or more organisms, viruses or viroids. organismal entity + + + + + + + + A plant structure (PO:0005679) which is a whole organism. + genet (broad) + ramet (broad) + planta entera (Spanish, exact) + 植物体全体 (Japanese, exact) + bush (narrow) + frutex (narrow) + frutices (narrow) + gametophyte (narrow) + herb (narrow) + liana (narrow) + prothalli (narrow) + prothallium (narrow) + prothallus (narrow) + seedling (narrow) + shrub (narrow) + sporophyte (narrow) + suffrutex (narrow) + suffrutices (narrow) + tree (narrow) + vine (narrow) + woody clump (narrow) + clonal colony (related) + colony (related) + whole plant + + + + + + + + + An anatomical structure that is or was part of a plant, or was derived from a part of a plant. + estructura vegetal (Spanish, exact) + 植物 構造 (Japanese, exact) + plant structure + + + + + + + + + An anatomical entity that is or was part of a plant. + entidad anat&#243mica vegetal (Spanish, exact) + 植物 解剖学（形態）的実体 (Japanese, exact) + plant anatomical entity + + + + + + + + + A material entity consisting of multiple components that are causally integrated. + May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43 + Chris Mungall + http://www.jbiomedsem.com/content/4/1/43 + system + + + + + + + + + Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. + anatomical entity + + + + + + + + + + + + + + + + + + + + + + + + + + + + + example to be eventually removed + + + + + + + + + The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job + Person:Alan Ruttenberg + failed exploratory term + + + + + + + + + Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete. + metadata complete + + + + + + + + + term created to ease viewing/sort terms for development purpose, and will not be included in a release + organizational term + + + + + + + + + + Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release." + ready for release + + + + + + + + + Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors. + metadata incomplete + + + + + + + + + Nothing done yet beyond assigning a unique class ID and proposing a preferred term. + uncurated + + + + + + + + + + All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor. + pending final vetting + + + + + + + + + Core is an instance of a grouping of terms from an ontology or ontologies. It is used by the ontology to identify main classes. + PERSON: Alan Ruttenberg + PERSON: Melanie Courtot + core + + + + + + + + + placeholder removed + + + + + + + + + An editor note should explain what were the merged terms and the reason for the merge. + terms merged + + + + + + + + + This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use. + term imported + + + + + + + + + This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created. + term split + + + + + + + + + Hard to give a definition for. Intuitively a "natural kind" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents. + Alan Ruttenberg + A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf + universal + + + + + + + + + A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal + "definitions", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal. + Alan Ruttenberg + defined class + + + + + + + + + A named class expression is a logical expression that is given a name. The name can be used in place of the expression. + named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions + Alan Ruttenberg + named class expression + + + + + + + + + Terms with this status should eventually replaced with a term from another ontology. + Alan Ruttenberg + group:OBI + to be replaced with external ontology term + + + + + + + + + + A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues. + Alan Ruttenberg + group:OBI + requires discussion + + + + + + + + + +## Elucidation + +This is used when the statement/axiom is assumed to hold true 'eternally' + +## How to interpret (informal) + +First the "atemporal" FOL is derived from the OWL using the standard +interpretation. This axiom is temporalized by embedding the axiom +within a for-all-times quantified sentence. The t argument is added to +all instantiation predicates and predicates that use this relation. + +## Example + + Class: nucleus + SubClassOf: part_of some cell + + forall t : + forall n : + instance_of(n,Nucleus,t) + implies + exists c : + instance_of(c,Cell,t) + part_of(n,c,t) + +## Notes + +This interpretation is *not* the same as an at-all-times relation + + + axiom holds for all times + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z + infer input from direct reg + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + GP(X) part_of complex(Y) enables MF(Z) -> X contributes_to Z + contrib to MF + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z), +e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity' + enabling an MF enables its parts + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction' + involved in BP + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + From ligand activity to has_ligand + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to "... -> overlaps" + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this. + inferring direct reg edge from input to regulatory subfunction + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + inferring direct neg reg edge from input to regulatory subfunction + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + inferring direct positive reg edge from input to regulatory subfunction + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + From has_ligand to ligand activity + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + effector input is compound function input + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Input of effector is input of its parent MF + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + if effector directly regulates X, its parent MF directly regulates X + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + if effector directly positively regulates X, its parent MF directly positively regulates X + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + if effector directly negatively regulates X, its parent MF directly negatively regulates X + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - + diff --git a/imports/ro_import.json b/imports/ro_import.json index fc2dd078..460bee9c 100644 --- a/imports/ro_import.json +++ b/imports/ro_import.json @@ -1,161 +1,268 @@ { "graphs" : [ { "nodes" : [ { - "id" : "http://purl.obolibrary.org/obo/CARO_0000006", + "id" : "http://purl.obolibrary.org/obo/GO_0003674", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/caro.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "molecular process" } ] }, "type" : "CLASS", - "lbl" : "material anatomical entity" + "lbl" : "molecular_function" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0003674", + "id" : "http://purl.obolibrary.org/obo/RO_0002331", + "meta" : { + "definition" : { + "val" : "c involved_in p if and only if c enables some process p', and p' is part of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Involved_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "enables part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "actively involved in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002211", "meta" : { + "definition" : { + "val" : "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Hill" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Regulation precludes parthood; the regulatory process may not be within the regulated process." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Tanya Berardini" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GO" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "molecular process" + "val" : "regulates (processual)" } ] }, + "type" : "PROPERTY", + "lbl" : "regulates" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000402", "type" : "CLASS", - "lbl" : "molecular_function" + "lbl" : "branched" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000015", + "id" : "http://purl.obolibrary.org/obo/RO_0002212", "meta" : { "definition" : { - "val" : "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.", + "val" : "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", "xrefs" : [ ] - } + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "negatively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] }, - "type" : "CLASS", - "lbl" : "process" + "type" : "PROPERTY", + "lbl" : "negatively regulates" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0005634", + "id" : "http://purl.obolibrary.org/obo/RO_0002333", "meta" : { + "definition" : { + "val" : "inverse of enables", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/go.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "nucleus" + "type" : "PROPERTY", + "lbl" : "enabled by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002090", + "id" : "http://purl.obolibrary.org/obo/RO_0002450", "meta" : { + "definition" : { + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly increases activity of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "ends_at_start_of" + "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "meets" + "val" : "activates" } ] }, "type" : "PROPERTY", - "lbl" : "immediately precedes" + "lbl" : "activity directly positively regulates activity of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000052", + "id" : "http://purl.obolibrary.org/obo/RO_0002448", "meta" : { "definition" : { - "val" : "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence", + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.", "xrefs" : [ ] }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly controls", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this red color inheres in this apple" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "activity directly regulates activity of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002327", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is executing" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "A dependent inheres in its bearer at all times for which the dependent exists." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this fragility inheres in this vase" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is catalyzing" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "inheres in" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "inheres_in" + "val" : "catalyzes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "a particular instances of akt-2 enables some instance of protein kinase activity" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "inheres in" + "lbl" : "enables" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000056", + "id" : "http://purl.obolibrary.org/obo/RO_0002449", "meta" : { "definition" : { - "val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process", + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.", "xrefs" : [ ] }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly decreases activity of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this input material (or this output material) participates in this process" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this investigator participates in this investigation" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "participates_in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this blood clot participates in this blood coagulation" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "participates in" + "val" : "inhibits" } ] }, "type" : "PROPERTY", - "lbl" : "participates in" + "lbl" : "activity directly negatively regulates activity of" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0044464", + "id" : "http://purl.obolibrary.org/obo/RO_0002328", "meta" : { + "definition" : { + "val" : "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/go.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This is a grouping relation that collects relations used for the purpose of connecting structure and function" } ] }, - "type" : "CLASS", - "lbl" : "cell part" + "type" : "PROPERTY", + "lbl" : "functionally related to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000053", + "id" : "http://purl.obolibrary.org/obo/RO_0002329", "meta" : { "definition" : { - "val" : "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", + "val" : "this relation holds between c and p when c is part of some c', and c' is capable of p.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "bearer of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this vase is bearer of this fragility" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "bearer_of" - }, { + "val" : "false" + } ] + }, + "type" : "PROPERTY", + "lbl" : "part of structure that is capable of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002604", + "meta" : { + "definition" : { + "val" : "x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x).", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this apple is bearer of this red color" + "val" : "'anterior end of organism' is-opposite-of 'posterior end of organism'" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "is bearer of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'increase in temperature' is-opposite-of 'decrease in temperature'" } ] }, "type" : "PROPERTY", - "lbl" : "bearer of" + "lbl" : "is opposite of" }, { "id" : "http://purl.obolibrary.org/obo/CL_0000000", "meta" : { @@ -166,10 +273,6 @@ }, "type" : "CLASS", "lbl" : "cell" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0008150", - "type" : "CLASS", - "lbl" : "biological_process" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000050", "meta" : { @@ -178,9 +281,6 @@ "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" }, { @@ -192,18 +292,48 @@ }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "is part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000004" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this day is part of this year (occurrent parthood)" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000017" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000019" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000031" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." @@ -212,318 +342,2629 @@ "type" : "PROPERTY", "lbl" : "part of" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0030000", - "type" : "CLASS", - "lbl" : "biological entity" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016301", - "type" : "CLASS", - "lbl" : "kinase activity" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016740", - "type" : "CLASS", - "lbl" : "transferase activity" - }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000051", + "id" : "http://purl.obolibrary.org/obo/RO_0002323", "meta" : { "definition" : { - "val" : "a core relation that holds between a whole and its part", + "val" : "A mereological relationship or a topological relationship", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "has part" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my body has part my brain (continuant parthood, two material entities)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "mereotopologically related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002202", + "meta" : { + "definition" : { + "val" : "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has_part" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This is the transitive form of the develops from relation" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this year has part this day (occurrent parthood)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "PROPERTY", - "lbl" : "has part" + "lbl" : "develops from" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0000014", + "id" : "http://purl.obolibrary.org/obo/RO_0002324", "meta" : { + "definition" : { + "val" : "A relationship that holds between entities participating in some developmental process (GO:0032502)", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/caro.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "cell part (CARO)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" } ] }, - "type" : "CLASS", - "lbl" : "cell part" + "type" : "PROPERTY", + "lbl" : "developmentally related to" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000004", + "id" : "http://purl.obolibrary.org/obo/RO_0002566", "meta" : { "definition" : { - "val" : "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.", + "val" : "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b", "xrefs" : [ ] - } + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influences (material entity to material entity)" + } ] }, - "type" : "CLASS", - "lbl" : "independent continuant" + "type" : "PROPERTY", + "lbl" : "causally influences" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002222", + "id" : "http://purl.obolibrary.org/obo/RO_0002203", "meta" : { + "definition" : { + "val" : "inverse of develops from", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" } ] }, "type" : "PROPERTY", - "lbl" : "temporally related to" + "lbl" : "develops into" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002086", + "id" : "http://purl.obolibrary.org/obo/RO_0002447", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Axiomatization to GO to be added later" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "ends after" + "lbl" : "phosphorylates" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002087", + "id" : "http://purl.obolibrary.org/obo/PATO_0000001", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "starts_at_end_of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "quality (PATO)" + } ] + }, + "type" : "CLASS", + "lbl" : "quality" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000116", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" } ] }, "type" : "PROPERTY", - "lbl" : "immediately preceded by" + "lbl" : "editor note" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000057", + "id" : "http://purl.obolibrary.org/obo/IAO_0000117", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "term editor" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000114", + "type" : "PROPERTY", + "lbl" : "has curation status" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016740", + "type" : "CLASS", + "lbl" : "transferase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000115", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "definition" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000051", "meta" : { "definition" : { - "val" : "a relation between a process and a continuant, in which the continuant is somehow involved in the process", + "val" : "a core relation that holds between a whole and its part", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/source", - "val" : "http://www.obofoundry.org/ro/#OBO_REL:has_participant" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this blood coagulation has participant this blood clot" + "val" : "my body has part my brain (continuant parthood, two material entities)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "has participant" + "val" : "has part" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has_participant" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." + "val" : "has_part" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this process has participant this input material (or this output material)" + "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this investigation has participant this investigator" + "val" : "this year has part this day (occurrent parthood)" } ] }, "type" : "PROPERTY", - "lbl" : "has participant" + "lbl" : "has part" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000066", + "id" : "http://purl.obolibrary.org/obo/IAO_0000112", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "example of usage" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002608", "meta" : { "definition" : { - "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "val" : "Inverse of 'causal agent in process'", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "occurs_in" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", - "val" : "http://purl.obolibrary.org/obo/bfo.owl" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "unfolds_in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "unfolds in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "occurs in" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, "type" : "PROPERTY", - "lbl" : "occurs in" + "lbl" : "process has causal agent" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0001010", - "type" : "CLASS", - "lbl" : "organism or virus or viroid" + "id" : "http://purl.obolibrary.org/obo/IAO_0000111", + "type" : "PROPERTY", + "lbl" : "editor preferred term" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "id" : "http://purl.obolibrary.org/obo/IAO_0000118", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "alternative term" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000119", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "definition source" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002286", "meta" : { "definition" : { - "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "val" : "Inverse of developmentally preceded by", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "site of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally succeeded by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002563", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", - "val" : "http://purl.obolibrary.org/obo/bfo.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" } ] }, "type" : "PROPERTY", - "lbl" : "contains process" + "lbl" : "interaction relation helper property" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016772", - "type" : "CLASS", - "lbl" : "transferase activity, transferring phosphorus-containing groups" + "id" : "http://purl.obolibrary.org/obo/RO_0002564", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecular interaction relation helper property" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000002", + "id" : "http://purl.obolibrary.org/obo/RO_0002559", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influenced by (material entity to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally influenced by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001900", "meta" : { "definition" : { - "val" : "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.", + "val" : "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.", "xrefs" : [ ] - } + }, + "basicPropertyValues" : [ { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/ROAndTime" + } ] }, - "type" : "CLASS", - "lbl" : "continuant" + "type" : "PROPERTY", + "lbl" : "temporal interpretation" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000003", + "id" : "http://purl.obolibrary.org/obo/RO_0001901", "meta" : { "definition" : { - "val" : "An entity that has temporal parts and that happens, unfolds or develops through time.", + "val" : "\n\n## Elucidation\n\nThis is used when the statement/axiom is assumed to hold true 'eternally'\n\n## How to interpret (informal)\n\nFirst the \"atemporal\" FOL is derived from the OWL using the standard\ninterpretation. This axiom is temporalized by embedding the axiom\nwithin a for-all-times quantified sentence. The t argument is added to\nall instantiation predicates and predicates that use this relation.\n\n## Example\n\n Class: nucleus\n SubClassOf: part_of some cell\n\n forall t :\n forall n :\n instance_of(n,Nucleus,t)\n implies\n exists c :\n instance_of(c,Cell,t)\n part_of(n,c,t)\n\n## Notes\n\nThis interpretation is *not* the same as an at-all-times relation\n\n", "xrefs" : [ ] } }, - "type" : "CLASS", - "lbl" : "occurrent" + "type" : "INDIVIDUAL", + "lbl" : "axiom holds for all times" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000062", + "id" : "http://purl.obolibrary.org/obo/RO_0002434", "meta" : { "definition" : { - "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "val" : "A relationship that holds between two entities in which the processes executed by the two entities are causally connected.", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "in pairwise interaction with", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "is preceded by" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." + "val" : "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." }, { - "pred" : "http://purl.org/dc/elements/1.1/source", - "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "preceded_by" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "preceded by" + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0914" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Considering relabeling as 'pairwise interacts with'" } ] }, "type" : "PROPERTY", - "lbl" : "preceded by" + "lbl" : "interacts with" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000040", + "id" : "http://purl.obolibrary.org/obo/RO_0002314", "meta" : { "definition" : { - "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.", + "val" : "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.", "xrefs" : [ ] - } + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + } ] }, - "type" : "CLASS", - "lbl" : "material entity" + "type" : "PROPERTY", + "lbl" : "inheres in part of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002436", + "meta" : { + "definition" : { + "val" : "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/ECO_0000353" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "molecularly binds with" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0915" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "binds" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecularly interacts with" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", + "type" : "PROPERTY", + "lbl" : "has_related_synonym" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000125", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "pending final vetting" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000040", + "meta" : { + "definition" : { + "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "material entity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002430", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in negative regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002431", + "meta" : { + "definition" : { + "val" : "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "OWL does not allow defining object properties via a Union" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "involved in or reguates" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in or involved in regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002432", + "meta" : { + "definition" : { + "val" : "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.", + "xrefs" : [ "GOC:cjm", "GOC:dos" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "enables activity in", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A protein that enables activity in a cytosol." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes activity in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is active in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002305", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + }, { + "pred" : "http://purl.org/dc/terms/creator", + "val" : "cjm" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of, negative effect" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002427", + "meta" : { + "definition" : { + "val" : "inverse of causally upstream of or within", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally downstream of or within" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000141", + "type" : "CLASS", + "lbl" : "structure" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002428", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some p' and p' regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0008150", + "type" : "CLASS", + "lbl" : "biological_process" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002429", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some p' and p' positively regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in positive regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001199", + "type" : "CLASS", + "lbl" : "linear" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002304", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/terms/creator", + "val" : "cjm" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of, positive effect" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", + "type" : "PROPERTY", + "lbl" : "has_obo_format_version" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000412", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "imported from" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0004047", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002418" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-03-13T23:55:19Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of or within, positive effect" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002022", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:24Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly regulated by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002385", + "meta" : { + "definition" : { + "val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to developmentally contribute to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002264", + "meta" : { + "definition" : { + "val" : "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." + } ] + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of or within" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002023", + "meta" : { + "definition" : { + "val" : "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:38Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly negatively regulated by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0004046", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-03-13T23:55:05Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002418" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of or within, negative effect" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002024", + "meta" : { + "definition" : { + "val" : "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly positively regulated by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002387", + "meta" : { + "definition" : { + "val" : "x has the potential to develop into y iff x develops into y or if x is capable of developing into y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to develop into" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002388", + "meta" : { + "definition" : { + "val" : "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to directly develop into" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002025", + "meta" : { + "definition" : { + "val" : "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-22T14:14:36Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has effector activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002263", + "meta" : { + "definition" : { + "val" : "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." + } ] + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002384", + "meta" : { + "definition" : { + "val" : "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has developmental potential involving" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002019", + "meta" : { + "definition" : { + "val" : "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-07-19T17:30:36Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has ligand" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001241", + "type" : "CLASS", + "lbl" : "physical object quality" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002418", + "meta" : { + "definition" : { + "val" : "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "influences (processual)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of or within" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002015", + "meta" : { + "definition" : { + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:17Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'." + } ] + }, + "type" : "PROPERTY", + "lbl" : "has positive regulatory component activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002411", + "meta" : { + "definition" : { + "val" : "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002258", + "meta" : { + "definition" : { + "val" : "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "In general you should not use this relation to make assertions - use one of the more specific relations below this one" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally preceded by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002412", + "meta" : { + "definition" : { + "val" : "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately causally upstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002017", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:44:33Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has component activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002018", + "meta" : { + "definition" : { + "val" : "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:49:21Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has component process" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000066", + "meta" : { + "definition" : { + "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "occurs_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds_in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "occurs in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "occurs in" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "meta" : { + "definition" : { + "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "site of" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" + } ] + }, + "type" : "PROPERTY", + "lbl" : "contains process" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000062", + "meta" : { + "definition" : { + "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is preceded by" + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "preceded_by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "preceded by" + } ] + }, + "type" : "PROPERTY", + "lbl" : "preceded by" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000063", + "meta" : { + "definition" : { + "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "precedes" + } ] + }, + "type" : "PROPERTY", + "lbl" : "precedes" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0003824", + "type" : "CLASS", + "lbl" : "catalytic activity" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000000", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "anatomical entity" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000003", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "connected anatomical structure" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000019", + "type" : "CLASS", + "lbl" : "quality" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000006", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "material anatomical entity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000015", + "meta" : { + "definition" : { + "val" : "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "process" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002090", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/BFO_0000063" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "ends_at_start_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "meets" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately precedes" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002254", + "meta" : { + "definition" : { + "val" : "x has developmental contribution from y iff x has some part z such that z develops from y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has developmental contribution from" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0004035", + "meta" : { + "definition" : { + "val" : "c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of,_negative_effect" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002263" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-26T23:53:22Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of, negative effect" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002255", + "meta" : { + "definition" : { + "val" : "inverse of has developmental contribution from", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally contributes to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002013", + "meta" : { + "definition" : { + "val" : "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:30:46Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has regulatory component activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002014", + "meta" : { + "definition" : { + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:01Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has negative regulatory component activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002410", + "meta" : { + "definition" : { + "val" : "This relation groups causal relations between material entities and causal relations between processes", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0004032", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within,_positive_effect" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002264" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-26T23:49:30Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of or within, positive effect" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0004031", + "meta" : { + "definition" : { + "val" : "Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-25T23:20:13Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "enables subfunction" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0044464", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "cell part" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0004034", + "meta" : { + "definition" : { + "val" : "c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of,_positive_effect" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002263" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-26T23:53:14Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of, positive effect" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0004033", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002264" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-26T23:49:51Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of or within, negative effect" + }, { + 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In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:Componency" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has component" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002584", + "meta" : { + "definition" : { + "val" : "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has part structure that is capable of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002222", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/terms/source", + "val" : "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "temporally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002464", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." + } ] + }, + "type" : "PROPERTY", + "lbl" : "helper property (not for use in curation)" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002581", + "meta" : { + "definition" : { + "val" : "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL", + "xrefs" : [ ] + } + }, + "type" : "PROPERTY", + "lbl" : "is a defining property chain axiom" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002582", + "meta" : { + "definition" : { + "val" : "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.", + "xrefs" : [ ] + } + }, + "type" : "PROPERTY", + "lbl" : "is a defining property chain axiom where second argument is reflexive" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002217", + "meta" : { + "definition" : { + "val" : "x actively participates in y if and only if x participates in y and x realizes some active role", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "agent in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "actively participates in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002218", + "meta" : { + "definition" : { + "val" : "x has participant y if and only if x realizes some active role that inheres in y", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'heart development' has active participant some Shh protein" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This may be obsoleted and replaced by the original 'has agent' relation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has agent" + } ] + }, + "type" : "PROPERTY", + "lbl" : "obsolete has active participant" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002334", + "meta" : { + "definition" : { + "val" : "inverse of regulates", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "regulated by (processual)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "regulated by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002213", + "meta" : { + "definition" : { + "val" : "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "positively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "positively regulates" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002335", + "meta" : { + "definition" : { + "val" : "inverse of negatively regulates", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "negatively regulated by" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0042995", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "cell projection" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002578", + "meta" : { + "definition" : { + "val" : "Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). 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"sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" } ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002506", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002506", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002334", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002434", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002501", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002258", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002215", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], @@ -1197,6 +3419,10 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002479", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002501", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002018", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], @@ -1223,39 +3449,21 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000066", "http://purl.obolibrary.org/obo/BFO_0000050" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002598", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002213" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0004034", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002304" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002264", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002418" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0004035", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002305" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0004033", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0004046" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002448", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002211", "http://purl.obolibrary.org/obo/RO_0002333" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002327", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002429", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002213" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002597", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002212" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0004032", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0004047" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002596", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002211" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002430", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/RO_0002212" ] @@ -1263,32 +3471,17 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002584", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002215" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002428", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002211" ] + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002202" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002449", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002630", "http://purl.obolibrary.org/obo/RO_0002333" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002432", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000066" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/BFO_0000050" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002216", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/BFO_0000050" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002479", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/BFO_0000066" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0004031", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002314", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0000052", "http://purl.obolibrary.org/obo/BFO_0000050" ] @@ -1301,9 +3494,6 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002566", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002411", "http://purl.obolibrary.org/obo/RO_0002333" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002211", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002578", "http://purl.obolibrary.org/obo/RO_0002578" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000062", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000062" ] @@ -1313,9 +3503,6 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002566", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002411", "http://purl.obolibrary.org/obo/RO_0002233" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002450", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002629", "http://purl.obolibrary.org/obo/RO_0002333" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0000057" ] @@ -1331,6 +3518,54 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002430", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002131", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002598", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004034", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002304" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002264", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002418" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004033", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0004046" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002255", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002203", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002429", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002596", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002211" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002428", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002211" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002479", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/BFO_0000066" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004031", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002211", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002578", "http://purl.obolibrary.org/obo/RO_0002578" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002450", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002629", "http://purl.obolibrary.org/obo/RO_0002333" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002314", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002314", "http://purl.obolibrary.org/obo/BFO_0000050" ] diff --git a/imports/ro_import.obo b/imports/ro_import.obo index ffe7a670..5fc7cd09 100644 --- a/imports/ro_import.obo +++ b/imports/ro_import.obo @@ -1,6 +1,9 @@ format-version: 1.2 +data-version: pato/releases/2019-10-29/imports/ro_import.owl +subsetdef: ro-eco "" +subsetdef: RO:0002259 "" ontology: pato/imports/ro_import -owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(AnnotationProperty())\n\n\n\n############################\n# Classes\n############################\n\n# Class: (continuant)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (occurrent)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (kinase activity)\n\nSubClassOf( ObjectHasSelf())\n\n\nSubClassOf(ObjectSomeValuesFrom( ) ObjectUnionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))))\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z\"^^xsd:string) Annotation(rdfs:label \"infer input from direct reg\"^^xsd:string) Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z),\ne.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'\") Annotation(rdfs:label \"enabling an MF enables its parts\") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'\"^^xsd:string) Annotation(rdfs:label \"involved in BP\"^^xsd:string) Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From ligand activity to has_ligand\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to \\\"... -> overlaps\\\"\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.\") Annotation(rdfs:label \"inferring direct reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct neg reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct positive reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From has_ligand to ligand activity\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"effector input is compound function input\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"Input of effector is input of its parent MF\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly regulates X, its parent MF directly regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly positively regulates X, its parent MF directly positively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"if effector directly negatively regulates X, its parent MF directly negatively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\n) +owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(AnnotationProperty())\n\n\n\n############################\n# Classes\n############################\n\n# Class: (continuant)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (occurrent)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (kinase activity)\n\nSubClassOf( ObjectHasSelf())\n\n\nSubClassOf(ObjectSomeValuesFrom( ) ObjectUnionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))))\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z\"^^xsd:string) Annotation(rdfs:label \"infer input from direct reg\"^^xsd:string) Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z),\ne.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'\") Annotation(rdfs:label \"enabling an MF enables its parts\") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'\"^^xsd:string) Annotation(rdfs:label \"involved in BP\"^^xsd:string) Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From ligand activity to has_ligand\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to \\\"... -> overlaps\\\"\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.\") Annotation(rdfs:label \"inferring direct reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct neg reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct positive reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From has_ligand to ligand activity\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"effector input is compound function input\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"Input of effector is input of its parent MF\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly regulates X, its parent MF directly regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly positively regulates X, its parent MF directly positively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"if effector directly negatively regulates X, its parent MF directly negatively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nAnnotationAssertion(rdfs:comment \"\")\n) [Term] id: BFO:0000002 @@ -29,6 +32,12 @@ name: process def: "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." [] is_a: BFO:0000003 ! occurrent +[Term] +id: BFO:0000019 +name: quality +is_a: BFO:0000020 ! specifically dependent continuant +relationship: BFO:0000050 BFO:0000019 ! part of quality + [Term] id: BFO:0000020 name: specifically dependent continuant @@ -121,12 +130,65 @@ id: GO:0016772 name: transferase activity, transferring phosphorus-containing groups is_a: GO:0016740 ! transferase activity +[Term] +id: GO:0042995 +name: cell projection +is_a: GO:0044464 ! cell part +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl + [Term] id: GO:0044464 name: cell part is_a: CARO:0000014 ! cell part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl +[Term] +id: PATO:0000001 +name: quality +is_a: BFO:0000020 ! specifically dependent continuant +property_value: IAO:0000589 "quality (PATO)" xsd:string + +[Term] +id: PATO:0000051 +name: morphology +is_a: BFO:0000019 ! quality +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0000052 +name: shape +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000141 +name: structure +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000402 +name: branched +is_a: PATO:0002009 ! branchiness + +[Term] +id: PATO:0001199 +name: linear +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001241 +name: physical object quality +is_a: PATO:0000001 ! quality + +[Term] +id: PATO:0002009 +name: branchiness +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0002124 +name: laminar +is_a: PATO:0000141 ! structure + [Typedef] id: BFO:0000050 name: part of @@ -140,9 +202,18 @@ property_value: IAO:0000116 "Occurrents are not subject to change and so parthoo property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string property_value: IAO:0000118 "part_of" xsd:string property_value: RO:0001900 RO:0001901 +property_value: RO:0040042 BFO:0000002 +property_value: RO:0040042 BFO:0000003 +property_value: RO:0040042 BFO:0000004 +property_value: RO:0040042 BFO:0000017 +property_value: RO:0040042 BFO:0000019 +property_value: RO:0040042 BFO:0000020 +property_value: RO:0040042 BFO:0000031 +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf property_value: seeAlso http://www.obofoundry.org/ro/#OBO_REL:part_of xsd:string is_transitive: true -is_a: RO:0002131 +is_a: RO:0002131 ! overlaps inverse_of: BFO:0000051 ! has part [Typedef] @@ -159,12 +230,13 @@ property_value: IAO:0000116 "Parthood requires the part and the whole to have co property_value: IAO:0000118 "has_part" xsd:string property_value: RO:0001900 RO:0001901 is_transitive: true -is_a: RO:0002131 +is_a: RO:0002131 ! overlaps [Typedef] id: BFO:0000062 name: preceded by def: "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] +subset: ro-eco property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:preceded_by xsd:string property_value: IAO:0000111 "preceded by" xsd:string property_value: IAO:0000116 "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." xsd:string @@ -181,6 +253,7 @@ inverse_of: BFO:0000063 ! precedes id: BFO:0000063 name: precedes def: "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] +subset: ro-eco property_value: IAO:0000111 "precedes" xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent @@ -222,7 +295,7 @@ property_value: IAO:0000112 "this red color inheres in this apple" xsd:string property_value: IAO:0000116 "A dependent inheres in its bearer at all times for which the dependent exists." xsd:string property_value: IAO:0000118 "inheres_in" xsd:string property_value: RO:0001900 RO:0001901 -is_a: RO:0002314 +is_a: RO:0002314 ! inheres in part of inverse_of: RO:0000053 ! bearer of [Typedef] @@ -268,59 +341,103 @@ holds_over_chain: BFO:0000051 RO:0000057 [Typedef] id: RO:0002013 -is_a: RO:0002017 -is_a: RO:0002334 +name: has regulatory component activity +def: "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B." [] +is_a: RO:0002017 ! has component activity +is_a: RO:0002334 ! regulated by +created_by: dos +creation_date: 2017-05-24T09:30:46Z [Typedef] id: RO:0002014 -is_a: RO:0002013 -is_a: RO:0002335 +name: has negative regulatory component activity +def: "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B." [] +comment: By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'. +is_a: RO:0002013 ! has regulatory component activity +is_a: RO:0002335 ! negatively regulated by +created_by: dos +creation_date: 2017-05-24T09:31:01Z [Typedef] id: RO:0002015 -is_a: RO:0002013 -is_a: RO:0002336 +name: has positive regulatory component activity +def: "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B." [] +comment: By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'. +is_a: RO:0002013 ! has regulatory component activity +is_a: RO:0002336 ! positively regulated by +created_by: dos +creation_date: 2017-05-24T09:31:17Z [Typedef] id: RO:0002017 -is_a: RO:0002018 +name: has component activity +comment: A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B. +is_a: RO:0002018 ! has component process +created_by: dos +creation_date: 2017-05-24T09:44:33Z [Typedef] id: RO:0002018 +name: has component process +def: "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] domain: BFO:0000015 ! process range: BFO:0000015 ! process -is_a: RO:0002180 +is_a: RO:0002180 ! has component +created_by: dos +creation_date: 2017-05-24T09:49:21Z [Typedef] id: RO:0002019 +name: has ligand +def: "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function." [] domain: GO:0004872 -is_a: RO:0002233 +is_a: RO:0002233 ! has input +created_by: dos +creation_date: 2017-07-19T17:30:36Z [Typedef] id: RO:0002022 -is_a: RO:0002334 -inverse_of: RO:0002578 +name: directly regulated by +comment: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2. {xref="GOC:dos"} +is_a: RO:0002334 ! regulated by +inverse_of: RO:0002578 ! directly regulates +created_by: dos +creation_date: 2017-09-17T13:52:24Z [Typedef] id: RO:0002023 -is_a: RO:0002022 -inverse_of: RO:0002630 +name: directly negatively regulated by +def: "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1." [GOC:dos] +is_a: RO:0002022 ! directly regulated by +inverse_of: RO:0002630 ! directly negatively regulates +created_by: dos +creation_date: 2017-09-17T13:52:38Z [Typedef] id: RO:0002024 -is_a: RO:0002022 -inverse_of: RO:0002629 +name: directly positively regulated by +def: "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1." [GOC:dos] +is_a: RO:0002022 ! directly regulated by +inverse_of: RO:0002629 ! directly positively regulates +created_by: dos +creation_date: 2017-09-17T13:52:47Z [Typedef] id: RO:0002025 +name: has effector activity +def: "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity." [GOC:dos] +comment: This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations. is_functional: true -is_a: RO:0002017 -is_a: RO:0002211 +is_a: RO:0002017 ! has component activity +is_a: RO:0002211 ! regulates +created_by: dos +creation_date: 2017-09-22T14:14:36Z [Typedef] id: RO:0002086 name: ends after comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) +subset: ro-eco property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string is_transitive: true is_a: RO:0002222 ! temporally related to @@ -338,367 +455,869 @@ inverse_of: RO:0002090 ! immediately precedes id: RO:0002090 name: immediately precedes comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) +subset: ro-eco property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string property_value: IAO:0000118 "ends_at_start_of" xsd:string property_value: IAO:0000118 "meets" xsd:string +property_value: RO:0002575 BFO:0000063 is_a: BFO:0000063 ! precedes [Typedef] id: RO:0002131 +name: overlaps +def: "x overlaps y if and only if there exists some z such that x has part z and z part of y" [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: RO:0001900 RO:0001901 holds_over_chain: BFO:0000050 BFO:0000050 holds_over_chain: BFO:0000051 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} holds_over_chain: BFO:0000051 RO:0002131 -is_a: RO:0002323 +is_a: RO:0002323 ! mereotopologically related to +transitive_over: BFO:0000050 ! part of +expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" [] [Typedef] id: RO:0002180 +name: has component +def: "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." xsd:string +property_value: IAO:0000232 "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." xsd:string +property_value: RO:0001900 RO:0001901 +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:Componency is_a: BFO:0000051 ! has part +[Typedef] +id: RO:0002202 +name: develops from +def: "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y" [] +comment: This is the transitive form of the develops from relation +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000117 "Melissa Haendel" xsd:string +property_value: IAO:0000117 "Terry Meehan" xsd:string +domain: BFO:0000004 ! independent continuant +range: BFO:0000004 ! independent continuant +is_transitive: true +is_a: RO:0002258 ! developmentally preceded by +inverse_of: RO:0002203 ! develops into + +[Typedef] +id: RO:0002203 +name: develops into +def: "inverse of develops from" [] +subset: RO:0002259 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000117 "Terry Meehan" xsd:string +is_transitive: true +is_a: RO:0002286 ! developmentally succeeded by +is_a: RO:0002387 ! has potential to develop into +is_a: RO:0002388 ! has potential to directly develop into + [Typedef] id: RO:0002211 +name: regulates +def: "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2." [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000117 "David Hill" xsd:string +property_value: IAO:0000117 "Tanya Berardini" xsd:string +property_value: IAO:0000119 "GO" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000232 "Regulation precludes parthood; the regulatory process may not be within the regulated process." xsd:string +property_value: IAO:0000589 "regulates (processual)" xsd:string +property_value: IAO:0000600 "false" xsd:boolean domain: BFO:0000015 ! process range: BFO:0000015 ! process holds_over_chain: RO:0002578 RO:0002578 is_transitive: true -is_a: RO:0002411 -inverse_of: RO:0002334 +is_a: RO:0002411 ! causally upstream of +inverse_of: RO:0002334 ! regulated by [Typedef] id: RO:0002212 -is_a: RO:0002211 -is_a: RO:0002305 -inverse_of: RO:0002335 +name: negatively regulates +def: "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "negatively regulates (process to process)" xsd:string +property_value: RO:0004050 RO:0002211 +is_a: RO:0002211 ! regulates +is_a: RO:0002305 ! causally upstream of, negative effect +inverse_of: RO:0002335 ! negatively regulated by [Typedef] id: RO:0002213 +name: positively regulates +def: "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "positively regulates (process to process)" xsd:string +property_value: RO:0004049 RO:0002211 holds_over_chain: RO:0002212 RO:0002212 is_transitive: true -is_a: RO:0002211 -is_a: RO:0002304 -inverse_of: RO:0002336 +is_a: RO:0002211 ! regulates +is_a: RO:0002304 ! causally upstream of, positive effect +inverse_of: RO:0002336 ! positively regulated by [Typedef] id: RO:0002215 +name: capable of +def: "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. " [] +subset: ro-eco +property_value: IAO:0000112 "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" xsd:string +property_value: IAO:0000112 "osteoclast SubClassOf 'capable of' some 'bone resorption'" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "has function realized in" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20123131 +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/21208450 +property_value: IAO:0000232 "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." xsd:string domain: BFO:0000004 ! independent continuant range: BFO:0000015 ! process -is_a: RO:0002216 +is_a: RO:0002216 ! capable of part of +expand_expression_to: "RO_0000053 some (RO_0000054 only ?Y)" [] [Typedef] id: RO:0002216 +name: capable of part of +def: "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "has function in" xsd:string +property_value: seeAlso "defining-property-chains-involving-reflexivity" holds_over_chain: RO:0002215 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} -is_a: RO:0002328 -is_a: RO:0002500 +is_a: RO:0002328 ! functionally related to +is_a: RO:0002500 ! causal agent in process +expand_expression_to: "RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))" [] [Typedef] id: RO:0002217 +name: actively participates in +def: "x actively participates in y if and only if x participates in y and x realizes some active role" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "agent in" xsd:string is_a: RO:0000056 ! participates in -inverse_of: RO:0002218 +inverse_of: RO:0002218 ! obsolete has active participant [Typedef] id: RO:0002218 +name: obsolete has active participant +def: "x has participant y if and only if x realizes some active role that inheres in y" [] +subset: ro-eco +property_value: IAO:0000112 "'heart development' has active participant some Shh protein" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "This may be obsoleted and replaced by the original 'has agent' relation" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "has agent" xsd:string is_a: RO:0000057 ! has participant +is_obsolete: true [Typedef] id: RO:0002222 name: temporally related to comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. +subset: ro-eco +property_value: http://purl.org/dc/terms/source https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 xsd:anyURI property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000119 https://en.wikipedia.org/wiki/Allen%27s_interval_algebra +property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent [Typedef] id: RO:0002233 +name: has input +def: "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "consumes" xsd:string domain: BFO:0000015 ! process range: BFO:0000040 ! material entity is_a: RO:0000057 ! has participant -inverse_of: RO:0002352 +inverse_of: RO:0002352 ! input of + +[Typedef] +id: RO:0002254 +name: has developmental contribution from +def: "x has developmental contribution from y iff x has some part z such that z develops from y" [] +property_value: IAO:0000112 "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +domain: CARO:0000000 ! anatomical entity +range: CARO:0000000 ! anatomical entity +holds_over_chain: BFO:0000051 RO:0002202 +is_a: RO:0002258 ! developmentally preceded by +inverse_of: RO:0002255 ! developmentally contributes to + +[Typedef] +id: RO:0002255 +name: developmentally contributes to +def: "inverse of has developmental contribution from" [] +subset: RO:0002259 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +holds_over_chain: RO:0002203 BFO:0000050 +is_a: RO:0002286 ! developmentally succeeded by +is_a: RO:0002385 ! has potential to developmentally contribute to + +[Typedef] +id: RO:0002258 +name: developmentally preceded by +def: "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p" [] +comment: This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "false" xsd:boolean +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "In general you should not use this relation to make assertions - use one of the more specific relations below this one" xsd:string +domain: BFO:0000002 ! continuant +range: BFO:0000002 ! continuant +is_a: RO:0002324 ! developmentally related to +inverse_of: RO:0002286 ! developmentally succeeded by [Typedef] id: RO:0002263 +name: acts upstream of +def: "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes." [] +property_value: IAO:0000112 "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." xsd:string +property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of holds_over_chain: RO:0002327 RO:0002411 -is_a: RO:0002264 +is_a: RO:0002264 ! acts upstream of or within [Typedef] id: RO:0002264 +name: acts upstream of or within +def: "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process." [] +synonym: "affects" RELATED [] +property_value: IAO:0000112 "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." xsd:string +property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within holds_over_chain: RO:0002327 RO:0002418 -is_a: RO:0002500 +is_a: RO:0002500 ! causal agent in process + +[Typedef] +id: RO:0002286 +name: developmentally succeeded by +def: "Inverse of developmentally preceded by" [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002384 ! has developmental potential involving [Typedef] id: RO:0002304 -is_a: RO:0002411 -is_a: RO:0004047 +name: causally upstream of, positive effect +comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y +property_value: http://purl.org/dc/terms/creator "cjm" xsd:string +property_value: RO:0004049 RO:0002411 +is_a: RO:0002411 ! causally upstream of +is_a: RO:0004047 ! causally upstream of or within, positive effect [Typedef] id: RO:0002305 -is_a: RO:0002411 -is_a: RO:0004046 +name: causally upstream of, negative effect +comment: holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y +property_value: http://purl.org/dc/terms/creator "cjm" xsd:string +property_value: RO:0004050 RO:0002411 +is_a: RO:0002411 ! causally upstream of +is_a: RO:0004046 ! causally upstream of or within, negative effect [Typedef] id: RO:0002314 +name: inheres in part of +def: "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w." [] +property_value: IAO:0000116 "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20064205 +property_value: RO:0001900 RO:0001901 +property_value: seeAlso "defining-property-chains-involving-reflexivity" holds_over_chain: RO:0000052 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} -is_a: RO:0002502 +is_a: RO:0002502 ! depends on transitive_over: BFO:0000050 ! part of +[Typedef] +id: RO:0002323 +name: mereotopologically related to +def: "A mereological relationship or a topological relationship" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" xsd:string +property_value: RO:0001900 RO:0001901 + +[Typedef] +id: RO:0002324 +name: developmentally related to +def: "A relationship that holds between entities participating in some developmental process (GO:0032502)" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" xsd:string + [Typedef] id: RO:0002327 -is_a: RO:0002215 -inverse_of: RO:0002333 +name: enables +property_value: IAO:0000112 "a particular instances of akt-2 enables some instance of protein kinase activity" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "catalyzes" xsd:string +property_value: IAO:0000118 "executes" xsd:string +property_value: IAO:0000118 "has" xsd:string +property_value: IAO:0000118 "is catalyzing" xsd:string +property_value: IAO:0000118 "is executing" xsd:string +property_value: IAO:0000232 "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." xsd:string +property_value: IAO:0000232 "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." xsd:string +is_a: RO:0002215 ! capable of +inverse_of: RO:0002333 ! enabled by transitive_over: BFO:0000051 ! has part -transitive_over: RO:0002017 +transitive_over: RO:0002017 ! has component activity + +[Typedef] +id: RO:0002328 +name: functionally related to +def: "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "This is a grouping relation that collects relations used for the purpose of connecting structure and function" xsd:string [Typedef] id: RO:0002329 +name: part of structure that is capable of +def: "this relation holds between c and p when c is part of some c', and c' is capable of p." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "false" xsd:boolean holds_over_chain: BFO:0000050 RO:0002215 {http://purl.obolibrary.org/obo/RO_0002581="true"} -is_a: RO:0002328 +is_a: RO:0002328 ! functionally related to [Typedef] id: RO:0002331 +name: involved in +def: "c involved_in p if and only if c enables some process p', and p' is part of p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "actively involved in" xsd:string +property_value: IAO:0000118 "enables part of" xsd:string +property_value: seeAlso Involved:in holds_over_chain: RO:0002327 BFO:0000050 -is_a: RO:0002217 -is_a: RO:0002431 +is_a: RO:0002217 ! actively participates in +is_a: RO:0002431 ! involved in or involved in regulation of transitive_over: BFO:0000050 ! part of [Typedef] id: RO:0002333 +name: enabled by +def: "inverse of enables" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: RO:0000057 ! has participant -is_a: RO:0002328 +is_a: RO:0002328 ! functionally related to [Typedef] id: RO:0002334 +name: regulated by +def: "inverse of regulates" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000589 "regulated by (processual)" xsd:string domain: BFO:0000015 ! process range: BFO:0000015 ! process is_transitive: true -is_a: RO:0002427 +is_a: RO:0002427 ! causally downstream of or within [Typedef] id: RO:0002335 -is_a: RO:0002334 +name: negatively regulated by +def: "inverse of negatively regulates" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002334 ! regulated by [Typedef] id: RO:0002336 -is_a: RO:0002334 +name: positively regulated by +def: "inverse of positively regulates" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002334 ! regulated by [Typedef] id: RO:0002352 +name: input of +def: "inverse of has input" [] +subset: ro-eco +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: RO:0000056 ! participates in -is_a: RO:0002328 +is_a: RO:0002328 ! functionally related to + +[Typedef] +id: RO:0002384 +name: has developmental potential involving +def: "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction)." [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +domain: CARO:0000000 ! anatomical entity +range: CARO:0000000 ! anatomical entity +is_a: RO:0002324 ! developmentally related to + +[Typedef] +id: RO:0002385 +name: has potential to developmentally contribute to +def: "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002384 ! has developmental potential involving + +[Typedef] +id: RO:0002387 +name: has potential to develop into +def: "x has the potential to develop into y iff x develops into y or if x is capable of developing into y" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002384 ! has developmental potential involving + +[Typedef] +id: RO:0002388 +name: has potential to directly develop into +def: "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002387 ! has potential to develop into [Typedef] id: RO:0002404 +name: causally downstream of +def: "inverse of upstream of" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: BFO:0000062 ! preceded by -is_a: RO:0002427 -inverse_of: RO:0002411 +is_a: RO:0002427 ! causally downstream of or within +inverse_of: RO:0002411 ! causally upstream of [Typedef] id: RO:0002405 +name: immediately causally downstream of +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: RO:0002087 ! immediately preceded by -is_a: RO:0002404 -inverse_of: RO:0002412 +is_a: RO:0002404 ! causally downstream of +inverse_of: RO:0002412 ! immediately causally upstream of + +[Typedef] +id: RO:0002410 +name: causally related to +def: "This relation groups causal relations between material entities and causal relations between processes" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000116 "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string [Typedef] id: RO:0002411 +name: causally upstream of +def: "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string is_transitive: true is_a: BFO:0000063 ! precedes -is_a: RO:0002418 +is_a: RO:0002418 ! causally upstream of or within [Typedef] id: RO:0002412 +name: immediately causally upstream of +def: "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q." [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: RO:0002575 RO:0002411 is_a: RO:0002090 ! immediately precedes -is_a: RO:0002411 +is_a: RO:0002411 ! causally upstream of [Typedef] id: RO:0002418 +name: causally upstream of or within +def: "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q." [] +synonym: "affects" RELATED [] +property_value: IAO:0000116 "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "influences (processual)" xsd:string is_transitive: true -is_a: RO:0002501 -inverse_of: RO:0002427 +is_a: RO:0002501 ! causal relation between processes +inverse_of: RO:0002427 ! causally downstream of or within [Typedef] id: RO:0002427 +name: causally downstream of or within +def: "inverse of causally upstream of or within" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations is_transitive: true -is_a: RO:0002501 +is_a: RO:0002501 ! causal relation between processes [Typedef] id: RO:0002428 +name: involved in regulation of +def: "c involved in regulation of p if c is involved in some p' and p' regulates some p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string holds_over_chain: RO:0002327 RO:0002211 holds_over_chain: RO:0002331 RO:0002211 -is_a: RO:0002263 -is_a: RO:0002431 +is_a: RO:0002263 ! acts upstream of +is_a: RO:0002431 ! involved in or involved in regulation of [Typedef] id: RO:0002429 +name: involved in positive regulation of +def: "c involved in regulation of p if c is involved in some p' and p' positively regulates some p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: RO:0004049 RO:0002428 holds_over_chain: RO:0002327 RO:0002213 holds_over_chain: RO:0002331 RO:0002213 -is_a: RO:0002428 +is_a: RO:0002428 ! involved in regulation of [Typedef] id: RO:0002430 +name: involved in negative regulation of +def: "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: RO:0004050 RO:0002428 holds_over_chain: RO:0002327 RO:0002212 holds_over_chain: RO:0002331 RO:0002212 -is_a: RO:0002428 +is_a: RO:0002428 ! involved in regulation of [Typedef] id: RO:0002431 -is_a: RO:0002264 -is_a: RO:0002328 -is_a: RO:0002500 +name: involved in or involved in regulation of +def: "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" [] +property_value: IAO:0000116 "OWL does not allow defining object properties via a Union" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "involved in or reguates" xsd:string +is_a: RO:0002264 ! acts upstream of or within +is_a: RO:0002328 ! functionally related to +is_a: RO:0002500 ! causal agent in process [Typedef] id: RO:0002432 +name: is active in +def: "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure." [GOC:cjm, GOC:dos] +synonym: "enables activity in" EXACT [] +property_value: IAO:0000112 "A protein that enables activity in a cytosol." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "executes activity in" xsd:string holds_over_chain: RO:0002327 BFO:0000066 {http://purl.obolibrary.org/obo/RO_0002581="true"} -is_a: RO:0002131 -is_a: RO:0002328 +is_a: RO:0002131 ! overlaps +is_a: RO:0002328 ! functionally related to [Typedef] id: RO:0002434 +name: interacts with +def: "A relationship that holds between two entities in which the processes executed by the two entities are causally connected." [] +subset: ro-eco +synonym: "in pairwise interaction with" EXACT [] +property_value: http://xmlns.com/foaf/0.1/page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI +property_value: IAO:0000116 "Considering relabeling as 'pairwise interacts with'" xsd:anyURI +property_value: IAO:0000116 "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." xsd:string +property_value: seeAlso http://purl.obolibrary.org/obo/MI_0914 xsd:anyURI domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_symmetric: true [Typedef] id: RO:0002436 +name: molecularly interacts with +def: "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "binds" xsd:string +property_value: IAO:0000118 "molecularly binds with" xsd:string +property_value: seeAlso ECO:0000353 +property_value: seeAlso http://purl.obolibrary.org/obo/MI_0915 xsd:anyURI is_symmetric: true -is_a: RO:0002434 +is_a: RO:0002434 ! interacts with [Typedef] id: RO:0002447 -is_a: RO:0002436 +name: phosphorylates +property_value: IAO:0000116 "Axiomatization to GO to be added later" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." xsd:string +is_a: RO:0002436 ! molecularly interacts with [Typedef] id: RO:0002448 -is_a: RO:0002436 -is_a: RO:0002566 +name: activity directly regulates activity of +def: "Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B." [] +synonym: "molecularly controls" EXACT [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002436 ! molecularly interacts with +is_a: RO:0002566 ! causally influences [Typedef] id: RO:0002449 -is_a: RO:0002448 +name: activity directly negatively regulates activity of +def: "Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B." [] +synonym: "molecularly decreases activity of" EXACT [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "inhibits" xsd:string +is_a: RO:0002448 ! activity directly regulates activity of [Typedef] id: RO:0002450 -is_a: RO:0002448 +name: activity directly positively regulates activity of +def: "Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B." [] +synonym: "molecularly increases activity of" EXACT [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "activates" xsd:string +is_a: RO:0002448 ! activity directly regulates activity of + +[Typedef] +id: RO:0002464 +name: helper property (not for use in curation) +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." xsd:string + +[Typedef] +id: RO:0002473 +name: composed primarily of +def: "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y." [] +subset: ro-eco +property_value: IAO:0000112 "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/22293552 +property_value: RO:0001900 RO:0001901 +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity +is_a: BFO:0000051 ! has part [Typedef] id: RO:0002479 +name: has part that occurs in +def: "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c." [] +subset: ro-eco +property_value: IAO:0000117 "Chris Mungall" xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000004 ! independent continuant holds_over_chain: BFO:0000051 BFO:0000066 {http://purl.obolibrary.org/obo/RO_0002581="true"} [Typedef] id: RO:0002481 -is_a: RO:0002564 +name: is kinase activity +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002564 ! molecular interaction relation helper property [Typedef] id: RO:0002500 -is_a: RO:0002595 -inverse_of: RO:0002608 +name: causal agent in process +def: "A relationship between a material entity and a process where the material entity has some causal role that influences the process" [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +is_a: RO:0002595 ! causal relation between material entity and a process +inverse_of: RO:0002608 ! process has causal agent [Typedef] id: RO:0002501 +name: causal relation between processes +def: "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent -is_a: RO:0002410 +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0002502 +name: depends on +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: seeAlso BFO:0000169 [Typedef] id: RO:0002506 +name: causal relation between material entities +property_value: IAO:0000116 "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity -is_a: RO:0002410 +is_a: RO:0002410 ! causally related to [Typedef] id: RO:0002559 -is_a: RO:0002506 -inverse_of: RO:0002566 +name: causally influenced by +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "causally influenced by (material entity to material entity)" xsd:string +is_a: RO:0002506 ! causal relation between material entities +inverse_of: RO:0002566 ! causally influences [Typedef] id: RO:0002563 -is_a: RO:0002464 +name: interaction relation helper property +property_value: http://xmlns.com/foaf/0.1/page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29 +is_a: RO:0002464 ! helper property (not for use in curation) [Typedef] id: RO:0002564 -is_a: RO:0002563 +name: molecular interaction relation helper property +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002563 ! interaction relation helper property [Typedef] id: RO:0002566 -is_a: RO:0002506 +name: causally influences +def: "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "causally influences (material entity to material entity)" xsd:string +is_a: RO:0002506 ! causal relation between material entities [Typedef] id: RO:0002578 -is_a: RO:0002211 -is_a: RO:0002412 +name: directly regulates +def: "Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "directly regulates (processual)" xsd:string +property_value: RO:0002575 RO:0002211 +is_a: RO:0002211 ! regulates +is_a: RO:0002412 ! immediately causally upstream of [Typedef] id: RO:0002584 +name: has part structure that is capable of +def: "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p" [] +property_value: IAO:0000112 "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string holds_over_chain: BFO:0000051 RO:0002215 -is_a: RO:0002328 -is_a: RO:0002595 +is_a: RO:0002328 ! functionally related to +is_a: RO:0002595 ! causal relation between material entity and a process [Typedef] id: RO:0002595 +name: causal relation between material entity and a process +def: "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity." [] +property_value: IAO:0000116 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations domain: BFO:0000040 ! material entity range: BFO:0000015 ! process -is_a: RO:0002410 +is_a: RO:0002410 ! causally related to [Typedef] id: RO:0002596 +name: capable of regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a regulates p." [] +property_value: IAO:0000112 "pyrethroid -> growth" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations holds_over_chain: RO:0002215 RO:0002211 -is_a: RO:0002500 +is_a: RO:0002500 ! causal agent in process [Typedef] id: RO:0002597 +name: capable of negatively regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations holds_over_chain: RO:0002215 RO:0002212 -is_a: RO:0002596 +is_a: RO:0002596 ! capable of regulating [Typedef] id: RO:0002598 +name: capable of positively regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p." [] +property_value: IAO:0000112 "renin -> arteriolar smooth muscle contraction" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations holds_over_chain: RO:0002215 RO:0002213 -is_a: RO:0002596 +is_a: RO:0002596 ! capable of regulating [Typedef] id: RO:0002608 -is_a: RO:0002410 +name: process has causal agent +def: "Inverse of 'causal agent in process'" [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +is_a: RO:0002410 ! causally related to [Typedef] id: RO:0002629 -is_a: RO:0002213 -is_a: RO:0002578 +name: directly positively regulates +def: "Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "directly positively regulates (process to process)" xsd:string +property_value: RO:0004049 RO:0002578 +is_a: RO:0002213 ! positively regulates +is_a: RO:0002578 ! directly regulates [Typedef] id: RO:0002630 -is_a: RO:0002212 -is_a: RO:0002578 +name: directly negatively regulates +def: "Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "directly negatively regulates (process to process)" xsd:string +property_value: RO:0004050 RO:0002578 +is_a: RO:0002212 ! negatively regulates +is_a: RO:0002578 ! directly regulates [Typedef] id: RO:0004031 +name: enables subfunction +def: "Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P." [] holds_over_chain: RO:0002327 BFO:0000051 -is_a: RO:0002328 +is_a: RO:0002328 ! functionally related to +created_by: cjm +creation_date: 2018-01-25T23:20:13Z [Typedef] id: RO:0004032 +name: acts upstream of or within, positive effect +property_value: RO:0004049 RO:0002264 +property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within,_positive_effect holds_over_chain: RO:0002327 RO:0004047 -is_a: RO:0002264 +is_a: RO:0002264 ! acts upstream of or within +created_by: cjm +creation_date: 2018-01-26T23:49:30Z [Typedef] id: RO:0004033 +name: acts upstream of or within, negative effect +property_value: RO:0004050 RO:0002264 holds_over_chain: RO:0002327 RO:0004046 -is_a: RO:0002264 +is_a: RO:0002264 ! acts upstream of or within +created_by: cjm +creation_date: 2018-01-26T23:49:51Z [Typedef] id: RO:0004034 +name: acts upstream of, positive effect +def: "c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive" [] +property_value: RO:0004049 RO:0002263 +property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of,_positive_effect holds_over_chain: RO:0002327 RO:0002304 -is_a: RO:0002263 -is_a: RO:0004032 +is_a: RO:0002263 ! acts upstream of +is_a: RO:0004032 ! acts upstream of or within, positive effect +created_by: cjm +creation_date: 2018-01-26T23:53:14Z [Typedef] id: RO:0004035 +name: acts upstream of, negative effect +def: "c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative" [] +property_value: RO:0004050 RO:0002263 +property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of,_negative_effect holds_over_chain: RO:0002327 RO:0002305 -is_a: RO:0002263 -is_a: RO:0004033 +is_a: RO:0002263 ! acts upstream of +is_a: RO:0004033 ! acts upstream of or within, negative effect +created_by: cjm +creation_date: 2018-01-26T23:53:22Z [Typedef] id: RO:0004046 -is_a: RO:0002418 +name: causally upstream of or within, negative effect +property_value: RO:0004050 RO:0002418 +is_a: RO:0002418 ! causally upstream of or within +created_by: cjm +creation_date: 2018-03-13T23:55:05Z [Typedef] id: RO:0004047 -is_a: RO:0002418 +name: causally upstream of or within, positive effect +property_value: RO:0004049 RO:0002418 +is_a: RO:0002418 ! causally upstream of or within +created_by: cjm +creation_date: 2018-03-13T23:55:19Z diff --git a/imports/ro_import.owl b/imports/ro_import.owl index fe6ab54e..185b8ed3 100644 --- a/imports/ro_import.owl +++ b/imports/ro_import.owl @@ -7,11 +7,17 @@ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" + xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:swrl="http://www.w3.org/2003/11/swrl#" xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#" - xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"> - + xmlns:swrlb="http://www.w3.org/2003/11/swrlb#" + xmlns:terms="http://purl.org/dc/terms/" + xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" + xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> + + + @@ -28,79 +34,193 @@ - + + editor preferred term + - + + + example of usage + - + + has curation status + - + + + definition + definition + - + + + editor note + - + + + term editor + - + + + alternative term + - + + + definition source + + + + + + + - + + + imported from + + + + + + + - + + + OBO foundry unique label + + + + + + + - + + An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context. + temporal interpretation + https://github.com/oborel/obo-relations/wiki/ROAndTime + + + + + + + + + + + + + + + - + + If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL + is a defining property chain axiom + - + + If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R. + is a defining property chain axiom where second argument is reflexive + + + + + + + + 'anterior end of organism' is-opposite-of 'posterior end of organism' + 'increase in temperature' is-opposite-of 'decrease in temperature' + x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). + is opposite of + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -110,12 +230,106 @@ + + + + + + + + + + + + + + + + subset_property + + + + + + + + + + + + + + + + + + + + has_broad_synonym + + + + + + + + database_cross_reference + + + + + + + + has_exact_synonym + + + + + + + + has_obo_format_version + + + + + + + + has_related_synonym + + + + + + + + + + + + + + in_subset + + + + + + + + shorthand + + + + @@ -128,6 +342,12 @@ + + + + + + + + + + + + + + + x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y + Chris Mungall + David Osumi-Sutherland + Melissa Haendel + Terry Meehan + This is the transitive form of the develops from relation + develops from + + + + + + + + + + + + + inverse of develops from + Chris Mungall + David Osumi-Sutherland + Terry Meehan + + develops into @@ -515,6 +872,18 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2. + We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit + Chris Mungall + David Hill + Tanya Berardini + + GO + Regulation precludes parthood; the regulatory process may not be within the regulated process. + regulates (processual) + false + regulates @@ -525,6 +894,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2. + Chris Mungall + + negatively regulates (process to process) + + negatively regulates @@ -540,6 +915,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2. + Chris Mungall + + positively regulates (process to process) + + positively regulates @@ -550,6 +931,17 @@ A continuant cannot have an occurrent as part: use 'participates in'. + mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974) + osteoclast SubClassOf 'capable of' some 'bone resorption' + A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. + Chris Mungall + has function realized in + + + For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)". + RO_0000053 some (RO_0000054 only ?Y) + + capable of @@ -563,6 +955,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p. + Chris Mungall + has function in + RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y)) + capable of part of + @@ -581,6 +979,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + x actively participates in y if and only if x participates in y and x realizes some active role + Chris Mungall + agent in + actively participates in @@ -589,6 +991,15 @@ A continuant cannot have an occurrent as part: use 'participates in'. + 'heart development' has active participant some Shh protein + + x has participant y if and only if x realizes some active role that inheres in y + This may be obsoleted and replaced by the original 'has agent' relation + Chris Mungall + has agent + + obsolete has active participant + true @@ -599,7 +1010,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Chris Mungall + Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends. + https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 + A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. temporally related to @@ -613,6 +1028,68 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p. + Chris Mungall + consumes + + has input + + + + + + + + + + + + + + + + Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong] + + x has developmental contribution from y iff x has some part z such that z develops from y + Chris Mungall + has developmental contribution from + + + + + + + + + + + + + + + inverse of has developmental contribution from + Chris Mungall + + developmentally contributes to + + + + + + + + + + + + + Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p + false + Chris Mungall + In general you should not use this relation to make assertions - use one of the more specific relations below this one + This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from + developmentally preceded by @@ -625,6 +1102,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision. + c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes. + acts upstream of + @@ -637,6 +1118,23 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway. + c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process. + affects + acts upstream of or within + + + + + + + + + + + Inverse of developmentally preceded by + Chris Mungall + developmentally succeeded by @@ -646,6 +1144,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y + causally upstream of, positive effect @@ -655,6 +1157,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y + causally upstream of, negative effect @@ -671,6 +1177,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. + q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w. + Because part_of is transitive, inheres in is a sub-relation of inheres in part of + Chris Mungall + + + inheres in part of + @@ -686,7 +1199,24 @@ A continuant cannot have an occurrent as part: use 'participates in'. - + + A mereological relationship or a topological relationship + Chris Mungall + Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships + + mereotopologically related to + + + + + + + + A relationship that holds between entities participating in some developmental process (GO:0032502) + Chris Mungall + Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development + developmentally related to + @@ -703,13 +1233,28 @@ A continuant cannot have an occurrent as part: use 'participates in'. + a particular instances of akt-2 enables some instance of protein kinase activity + Chris Mungall + catalyzes + executes + has + is catalyzing + is executing + This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized. + This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time. + enables - + + A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities. + Chris Mungall + This is a grouping relation that collects relations used for the purpose of connecting structure and function + functionally related to + @@ -721,6 +1266,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + this relation holds between c and p when c is part of some c', and c' is capable of p. + Chris Mungall + false + part of structure that is capable of @@ -747,6 +1296,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c involved_in p if and only if c enables some process p', and p' is part of p + Chris Mungall + actively involved in + enables part of + involved in + @@ -756,6 +1311,9 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of enables + Chris Mungall + enabled by @@ -767,6 +1325,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of regulates + Chris Mungall + regulated by (processual) + + regulated by @@ -775,6 +1338,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of negatively regulates + Chris Mungall + + negatively regulated by @@ -783,6 +1350,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of positively regulates + Chris Mungall + + positively regulated by @@ -792,6 +1363,61 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of has input + Chris Mungall + + + input of + + + + + + + + + + + + x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction). + Chris Mungall + has developmental potential involving + + + + + + + + + + x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y + Chris Mungall + has potential to developmentally contribute to + + + + + + + + + + x has the potential to develop into y iff x develops into y or if x is capable of developing into y + Chris Mungall + has potential to develop into + + + + + + + + + + x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y + Chris Mungall + has potential to directly develop into @@ -802,6 +1428,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + inverse of upstream of + Chris Mungall + causally downstream of @@ -812,13 +1442,37 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + Chris Mungall + immediately causally downstream of - + + + This relation groups causal relations between material entities and causal relations between processes + This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. + +To define causal relations in an activity-flow type network, we make use of 3 primitives: + + * Temporal: how do the intervals of the two occurrents relate? + * Is the causal relation regulatory? + * Is the influence positive or negative + +The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. + +For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. + +For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. + +Each of these 3 primitives can be composed to yield a cross-product of different relation types. + Chris Mungall + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causally related to + @@ -828,6 +1482,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain + Chris Mungall + causally upstream of @@ -837,6 +1495,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q. + Chris Mungall + + immediately causally upstream of @@ -847,6 +1510,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q. + We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2 + Chris Mungall + influences (processual) + affects + causally upstream of or within @@ -856,6 +1525,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of causally upstream of or within + Chris Mungall + + + causally downstream of or within @@ -873,6 +1547,9 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c involved in regulation of p if c is involved in some p' and p' regulates some p + Chris Mungall + involved in regulation of @@ -889,6 +1566,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c involved in regulation of p if c is involved in some p' and p' positively regulates some p + Chris Mungall + + involved in positive regulation of @@ -905,6 +1586,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c involved in regulation of p if c is involved in some p' and p' negatively regulates some p + Chris Mungall + + involved in negative regulation of @@ -915,6 +1600,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p + OWL does not allow defining object properties via a Union + Chris Mungall + involved in or reguates + involved in or involved in regulation of @@ -928,6 +1618,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A protein that enables activity in a cytosol. + c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure. + Chris Mungall + executes activity in + enables activity in + + is active in @@ -938,6 +1635,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. true + + + + c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure. + GOC:cjm + GOC:dos + @@ -947,6 +1651,16 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A relationship that holds between two entities in which the processes executed by the two entities are causally connected. + Considering relabeling as 'pairwise interacts with' + This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact. + Chris Mungall + Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules. + in pairwise interaction with + + interacts with + http://purl.obolibrary.org/obo/MI_0914 + https://github.com/oborel/obo-relations/wiki/InteractionRelations @@ -956,6 +1670,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. + An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other. + Chris Mungall + binds + molecularly binds with + molecularly interacts with + + http://purl.obolibrary.org/obo/MI_0915 @@ -964,6 +1685,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Axiomatization to GO to be added later + Chris Mungall + An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y. + phosphorylates @@ -978,6 +1703,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. + Chris Mungall + molecularly controls + activity directly regulates activity of @@ -991,6 +1720,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B. + Chris Mungall + inhibits + molecularly decreases activity of + activity directly negatively regulates activity of @@ -1004,13 +1738,39 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B. + Chris Mungall + activates + molecularly increases activity of + activity directly positively regulates activity of - + + Chris Mungall + This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning. + helper property (not for use in curation) + + + + + + + + + + + 'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate' + x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y. + Chris Mungall + + + + composed primarily of + @@ -1023,6 +1783,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c. + Chris Mungall + + has part that occurs in @@ -1040,6 +1804,8 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Chris Mungall + is kinase activity @@ -1049,6 +1815,9 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A relationship between a material entity and a process where the material entity has some causal role that influences the process + + causal agent in process @@ -1059,13 +1828,22 @@ A continuant cannot have an occurrent as part: use 'participates in'. + p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q. + Chris Mungall + + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causal relation between processes - + + Chris Mungall + depends on + + @@ -1075,6 +1853,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch + Chris Mungall + + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causal relation between material entities @@ -1084,6 +1867,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Chris Mungall + + causally influenced by (material entity to material entity) + causally influenced by @@ -1092,6 +1879,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Chris Mungall + interaction relation helper property + + https://github.com/oborel/obo-relations/wiki/InteractionRelations @@ -1100,6 +1891,8 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Chris Mungall + molecular interaction relation helper property @@ -1118,6 +1911,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b + Chris Mungall + + causally influences (material entity to material entity) + causally influences @@ -1127,6 +1925,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2. + Chris Mungall + + directly regulates (processual) + + directly regulates @@ -1140,6 +1944,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + gland SubClassOf 'has part structure that is capable of' some 'secretion by cell' + s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p + Chris Mungall + has part structure that is capable of @@ -1150,6 +1958,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + Chris Mungall + + causal relation between material entity and a process @@ -1162,6 +1975,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + pyrethroid -> growth + Holds between c and p if and only if c is capable of some activity a, and a regulates p. + + capable of regulating @@ -1174,6 +1991,9 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p. + + capable of negatively regulating @@ -1186,6 +2006,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + renin -> arteriolar smooth muscle contraction + Holds between c and p if and only if c is capable of some activity a, and a positively regulates p. + + capable of positively regulating @@ -1194,6 +2018,9 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Inverse of 'causal agent in process' + + process has causal agent @@ -1203,6 +2030,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2. + + directly positively regulates (process to process) + + directly positively regulates @@ -1212,6 +2044,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2. + + directly negatively regulates (process to process) + + directly negatively regulates @@ -1224,6 +2061,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P. + cjm + 2018-01-25T23:20:13Z + enables subfunction @@ -1236,6 +2077,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + 2018-01-26T23:49:30Z + acts upstream of or within, positive effect + @@ -1248,6 +2094,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + 2018-01-26T23:49:51Z + acts upstream of or within, negative effect @@ -1261,6 +2111,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive + + cjm + 2018-01-26T23:53:14Z + acts upstream of, positive effect + @@ -1274,6 +2130,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative + + cjm + 2018-01-26T23:53:22Z + acts upstream of, negative effect + @@ -1282,6 +2144,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + 2018-03-13T23:55:05Z + causally upstream of or within, negative effect @@ -1290,6 +2156,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + 2018-03-13T23:55:19Z + causally upstream of or within, positive effect @@ -1375,6 +2245,21 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + + + + + + quality + + + + @@ -1447,7 +2332,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. - organism or virus or viroid + organism or virus or viroid @@ -1456,7 +2341,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. - biological entity + biological entity @@ -1476,7 +2361,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. molecular process - molecular_function + molecular_function @@ -1485,7 +2370,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. - catalytic activity + catalytic activity @@ -1510,7 +2395,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. - biological_process + biological_process @@ -1525,7 +2410,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. true - kinase activity + kinase activity @@ -1534,7 +2419,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. - transferase activity + transferase activity @@ -1543,7 +2428,17 @@ A continuant cannot have an occurrent as part: use 'participates in'. - transferase activity, transferring phosphorus-containing groups + transferase activity, transferring phosphorus-containing groups + + + + + + + + + + cell projection @@ -1564,6 +2459,148 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + quality (PATO) + quality + + + + + + + + + + morphology + + + + + + + + + shape + + + + + + + + + structure + + + + + + + + + branched + + + + + + + + + linear + + + + + + + + + physical object quality + + + + + + + + + branchiness + + + + + + + + + laminar + + + + + + + + + + + + + + pending final vetting + + + + + + + + + +## Elucidation + +This is used when the statement/axiom is assumed to hold true 'eternally' + +## How to interpret (informal) + +First the "atemporal" FOL is derived from the OWL using the standard +interpretation. This axiom is temporalized by embedding the axiom +within a for-all-times quantified sentence. The t argument is added to +all instantiation predicates and predicates that use this relation. + +## Example + + Class: nucleus + SubClassOf: part_of some cell + + forall t : + forall n : + instance_of(n,Nucleus,t) + implies + exists c : + instance_of(c,Cell,t) + part_of(n,c,t) + +## Notes + +This interpretation is *not* the same as an at-all-times relation + + + axiom holds for all times + + + + + + + + + + + + IAO:0000112 + uberon + example_of_usage + true + example_of_usage + example of usage + + + + + + + + definition + + + + + + + + IAO:0000116 + uberon + editor_note + true + editor_note + editor note + + + + + + + + + + + + + + + + + + + + term replaced by + + + + + + + + + + + + + + + + + + + + + + + uberon + dc-creator + true + dc-creator + creator + + + + + + + + + uberon + dc-source + true + dc-source + derived from resource + + + + + + + + subset_property + + + + + + + + consider + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + has_alternative_id + + + + + + + + has_broad_synonym + + + + + + + + database_cross_reference + + + + + + + + has_exact_synonym + + + + + + + + has_narrow_synonym + + + + + + + + has_obo_format_version + + + + + + + + has_obo_namespace + + + + + + + + has_related_synonym + + + + + + + + + + + + + + in_subset + + + + + + + + + + + + + + + + + + + + + + + + + + shorthand + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + BFO:0000050 + uberon + part_of + part_of + part of + + + + + + + + + BFO:0000051 + uberon + has_part + has_part + has part + + + + + + + + + X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X) + BFO:0000062 + is preceded by + takes place after + uberon + preceded_by + preceded_by + preceded_by + + + + + is preceded by + SIO:000249 + + + + + takes place after + Allen:precedes + + + + + + + + + BFO:0000063 + uberon + precedes + precedes + precedes + + + + + + + + BFO:0000067 + uberon + contains_process + contains_process + contains process + + + + + + + + RO:0000053 + uberon + bearer_of + bearer_of + bearer of + + + + + + + + + X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) + A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]. + RO:0002087 + directly preceded by + is directly preceded by + is immediately preceded by + starts_at_end_of + uberon + immediately_preceded_by + immediately_preceded_by + immediately_preceded_by + + + + + + A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]. + SIO:000251 + + + + + is immediately preceded by + SIO:000251 + + + + + + + + A overlaps B if they share some part in common. + BFO_0000051 some (BFO_0000050 some ?Y) + RO:0002131 + uberon + overlaps + overlaps + overlaps + + + + + + + + + RO:0002180 + uberon + has_component + has_component + has component + + + + + + + + + RO:0002215 + uberon + capable_of + capable_of + capable of + + + + + + + + + RO:0002216 + uberon + capable_of_part_of + capable_of_part_of + capable of part of + + + + + + + + RO:0002328 + uberon + functionally_related_to + functionally_related_to + functionally related to + + + + + + + + + + + + + RO:0002329 + uberon + part_of_structure_that_is_capable_of + part_of_structure_that_is_capable_of + part of structure that is capable of + + + + + + + + + RO:0002352 + uberon + input_of + input_of + input of + + + + + + + + + x composed_primarily_of y iff: more than half of the mass of x is made from parts of y + RO:0002473 + uberon + RO:0002473 + composed_primarily_of + composed_primarily_of + composed primarily of + + + + + + + + + + + + + Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. + + AAO:0010841 + AEO:0000000 + BILA:0000000 + BIRNLEX:6 + CARO:0000000 + EHDAA2:0002229 + FBbt:10000000 + FBbt_root:00000000 + FMA:62955 + HAO:0000000 + MA:0000001 + NCIT:C12219 + TAO:0100000 + TGMA:0001822 + UMLS:C1515976 + WBbt:0000100 + XAO:0000000 + ZFA:0100000 + uberon + UBERON:0001062 + + anatomical entity + + + + + Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. + + FMA:62955 + + + + + UMLS:C1515976 + ncithesaurus:Anatomic_Structure_System_or_Substance + - + diff --git a/pato-base.json b/pato-base.json index e0065dcc..c1ee77a5 100644 --- a/pato-base.json +++ b/pato-base.json @@ -2650,11 +2650,6 @@ "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "flared", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -6921,6 +6916,35 @@ }, "type" : "CLASS", "lbl" : "obsolete relative neurobehavioral function value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040023", + "meta" : { + "definition" : { + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body.", + "xrefs" : [ "https://en.wiktionary.org/wiki/distomedial" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "distomedial", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "disto-medial orientation", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-19T21:54:33Z" + } ] + }, + "type" : "CLASS", + "lbl" : "distomedial orientation" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000804", "meta" : { @@ -6947,6 +6971,28 @@ }, "type" : "CLASS", "lbl" : "obsolete tactile response value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040024", + "meta" : { + "definition" : { + "val" : "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] + }, + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "paired", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0001-5208-3432" + } ] + }, + "type" : "CLASS", + "lbl" : "bilaterally paired" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000806", "meta" : { @@ -6960,6 +7006,23 @@ }, "type" : "CLASS", "lbl" : "obsolete olfactory value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040021", + "meta" : { + "definition" : { + "val" : "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism..", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0001-5208-3432" + } ] + }, + "type" : "CLASS", + "lbl" : "unpaired" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000805", "meta" : { @@ -6973,6 +7036,26 @@ }, "type" : "CLASS", "lbl" : "obsolete auditory value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040022", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-19T21:49:07Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0001-5208-3432" + } ] + }, + "type" : "CLASS", + "lbl" : "flared" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000808", "meta" : { @@ -7007,7 +7090,7 @@ "xrefs" : [ "NCIT:C3824" ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7029,6 +7112,31 @@ }, "type" : "CLASS", "lbl" : "obsolete taste value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040026", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being marked by interruptions or gaps.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "structurally interrupted", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is intended for use for terms such as MP:0010461 discontinuous pulmonary artery and MP:0004157 interrupted aortic arch." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "structurally discontinuous" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000800", "meta" : { @@ -35908,7 +36016,7 @@ } ] }, "type" : "CLASS", - "lbl" : "grand multi[arous" + "lbl" : "grand multiparous" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000195", "meta" : { @@ -49813,14 +49921,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001629", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001729", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002178", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001729", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005004", "pred" : "is_a", @@ -50125,14 +50233,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002189", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001632", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001516", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001632", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001465", "pred" : "is_a", @@ -50145,14 +50253,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045070", "pred" : "is_a", @@ -50485,14 +50593,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001825", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001054", "pred" : "is_a", @@ -50641,10 +50749,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002069", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002067" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", "pred" : "is_a", @@ -50653,6 +50757,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001539", "pred" : "is_a", @@ -50817,14 +50925,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001964", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002507", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000998", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000992" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002507", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0025001", "pred" : "is_a", @@ -50909,14 +51017,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002367", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000384" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001362", "pred" : "is_a", @@ -51049,14 +51157,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002541", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001431" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002460", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001431" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000261", "pred" : "is_a", @@ -51181,14 +51289,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001614", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000467", "pred" : "is_a", @@ -51337,14 +51445,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002265", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002185", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002183" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002365", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000383" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002185", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002183" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000646", "pred" : "is_a", @@ -51417,14 +51525,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001615", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", "pred" : "is_a", @@ -51617,14 +51725,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001243", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002026", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001243", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002228", "pred" : "is_a", @@ -52181,14 +52289,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001961", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001934", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001961", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045004", "pred" : "is_a", @@ -52341,14 +52449,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001440", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001531" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001855", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002376", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001855", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002163", "pred" : "is_a", @@ -52913,14 +53021,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000992", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001548" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001997", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000992", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001548" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002348", "pred" : "is_a", @@ -52957,14 +53065,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045061", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000921" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001408", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045021", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001408", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000273", "pred" : "is_a", @@ -52973,14 +53081,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045030", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000125" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001335", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001895" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001385" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001335", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001895" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002333", "pred" : "is_a", @@ -53217,14 +53325,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001873", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000946", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002132", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000946", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001384", "pred" : "is_a", @@ -53333,6 +53441,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000299", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001923", "pred" : "is_a", @@ -53341,10 +53453,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", "pred" : "is_a", @@ -53485,14 +53593,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002172", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001786" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002299", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002078" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002279", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002278" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002299", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002078" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002101", "pred" : "is_a", @@ -53645,14 +53753,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001552", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001457" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045051", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001323" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045073", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045051", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001323" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001739", "pred" : "is_a", @@ -53693,14 +53801,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045058", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001761", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001767" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045037", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001761", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001767" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001750", "pred" : "is_a", @@ -53785,14 +53893,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002385", "pred" : "is_a", @@ -54106,13 +54214,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001206" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001553", + "sub" : "http://purl.obolibrary.org/obo/PATO_0040023", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001551" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001311", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001310" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001553", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001551" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045043", "pred" : "is_a", @@ -54458,17 +54570,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000040" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001193", + "sub" : "http://purl.obolibrary.org/obo/PATO_0045049", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045054" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045049", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001193", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001258", "pred" : "is_a", @@ -54509,14 +54621,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000165" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001861", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002013" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001875", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001861", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002013" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000152", "pred" : "is_a", @@ -54565,14 +54677,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002041", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002316", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002129", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002316", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002436", "pred" : "is_a", @@ -54825,14 +54937,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001598" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002313", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002424", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002313", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000622", "pred" : "is_a", @@ -54997,14 +55109,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002345", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001814", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002345", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045034", "pred" : "is_a", @@ -55021,14 +55133,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045055", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045054" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040012", "pred" : "is_a", @@ -55037,6 +55149,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040026", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002310", "pred" : "is_a", @@ -55121,26 +55237,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001830", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002180", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002135", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000502" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002167", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002180", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001646" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002327", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002167", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001646" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002456", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002327", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000499", "pred" : "is_a", @@ -55293,6 +55409,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001370", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002012" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040022", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", @@ -55389,14 +55509,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000624", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", - "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", + "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002435", "pred" : "is_a", @@ -55585,14 +55705,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002212" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001430", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001428" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002212" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002324", "pred" : "is_a", @@ -55865,14 +55985,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000983", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000970" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001900", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001250", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000320" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001900", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000956", "pred" : "is_a", @@ -55945,14 +56065,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001188", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001748", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001758", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001757" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001748", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001746", "pred" : "is_a", @@ -56261,14 +56381,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001717", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001674", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001674", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001480", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -56357,14 +56477,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002106", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002054", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002078", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002054", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002403", "pred" : "is_a", @@ -56429,14 +56549,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001744", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001739" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000077" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001744", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001739" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000330", "pred" : "is_a", @@ -56481,14 +56601,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002034", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001161", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001161", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005024", "pred" : "is_a", @@ -56589,6 +56709,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001474", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040021", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002503", "pred" : "is_a", @@ -56685,14 +56809,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002205", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002226", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002194", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002226", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001912", "pred" : "is_a", @@ -56789,14 +56913,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001264", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000403", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045086", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000403", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000321", "pred" : "is_a", @@ -56945,14 +57069,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001547" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002405", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001874", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002405", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001290", "pred" : "is_a", @@ -56965,14 +57089,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002534", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002123", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001535", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001533" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002123", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001432", "pred" : "is_a", @@ -57137,14 +57261,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001454", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000085" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002501", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000632", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002501", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002407", "pred" : "is_a", @@ -57257,14 +57381,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001887", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001886" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002535", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001754", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002535", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045084", "pred" : "is_a", @@ -57345,14 +57469,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045060", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002073", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002073", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001284", "pred" : "is_a", @@ -57481,6 +57605,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040024", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001354", "pred" : "is_a", @@ -57569,14 +57697,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001321", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001321", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", @@ -57729,14 +57857,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001194", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002261", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002155", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002261", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001793", "pred" : "is_a", @@ -57853,14 +57981,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001339", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000619", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000627", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000619", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001511", "pred" : "is_a", @@ -57890,7 +58018,7 @@ "pred" : "http://www.geneontology.org/formats/oboInOwl#saved-by", "val" : "segerdel" } ], - "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-09-13/pato-base.json" + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29/pato-base.json" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ { @@ -58342,15 +58470,15 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045035", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001655" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045075", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001615" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045075", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001615" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045035", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001655" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" @@ -59512,15 +59640,15 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001551", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001457" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001778", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001230" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001778", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001230" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001551", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001457" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" diff --git a/pato-base.obo b/pato-base.obo index ee942a4c..2e868be9 100644 --- a/pato-base.obo +++ b/pato-base.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: pato/releases/2019-09-13/pato-base.owl +data-version: pato/releases/2019-10-29/pato-base.owl date: 07:02:2018 10:27 saved-by: segerdel auto-generated-by: OBO-Edit 2.3.1 @@ -12292,7 +12292,6 @@ def: "A curvature quality inhering in a bearer by virtue of the bearer's being c comment: TODO: obsolete, definition too ambiguous. subset: cell_quality subset: value_slim -synonym: "flared" EXACT [] is_a: PATO:0000406 ! curved [Term] @@ -17856,7 +17855,7 @@ creation_date: 2012-05-03T11:29:38Z [Term] id: PATO:0002372 -name: grand multi[arous +name: grand multiparous def: "A viviparous organism that has given birth five or more times." [wiki:http\://en.wikipedia.org/wiki/Parity_(biology)] subset: value_slim is_a: PATO:0002369 ! multiparous @@ -20371,11 +20370,53 @@ is_a: PATO:0000383 ! female property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-16T22:52:49Z xsd:dateTime +[Term] +id: PATO:0040021 +name: unpaired +def: "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.." [https://orcid.org/0000-0003-3162-7490] +is_a: PATO:0000467 ! present +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 + +[Term] +id: PATO:0040022 +name: flared +def: "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape." [] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:49:07Z xsd:dateTime + +[Term] +id: PATO:0040023 +name: distomedial orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body." [https://en.wiktionary.org/wiki/distomedial] +synonym: "disto-medial orientation" EXACT [] +synonym: "distomedial" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:54:33Z xsd:dateTime + +[Term] +id: PATO:0040024 +name: bilaterally paired +def: "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism." [https://orcid.org/0000-0003-3162-7490] +synonym: "paired" BROAD [] +is_a: PATO:0000467 ! present +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 + [Term] id: PATO:0040025 name: lesioned def: "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present." [NCIT:C3824] is_a: PATO:0000141 ! structure +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 + +[Term] +id: PATO:0040026 +name: structurally discontinuous +def: "A structural quality inhering in a bearer by virtue of the bearer's being marked by interruptions or gaps." [] +comment: This term is intended for use for terms such as MP:0010461 discontinuous pulmonary artery and MP:0004157 interrupted aortic arch. +synonym: "structurally interrupted" EXACT [] +is_a: PATO:0001241 ! physical object quality created_by: http://orcid.org/0000-0001-5208-3432 [Term] diff --git a/pato-base.owl b/pato-base.owl index 6a356bdb..1cc5e546 100644 --- a/pato-base.owl +++ b/pato-base.owl @@ -11,7 +11,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + OBO-Edit 2.3.1 07:02:2018 10:27 quality @@ -30197,7 +30197,6 @@ Association is weaker than correlation or proportionality. These relations may b A curvature quality inhering in a bearer by virtue of the bearer's being curved outward. - flared quality PATO:0001785 @@ -43491,7 +43490,7 @@ Association is weaker than correlation or proportionality. These relations may b quality PATO:0002372 - grand multi[arous + grand multiparous @@ -49372,12 +49371,87 @@ height'). + + + + + The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.. + + quality + PATO:0040021 + unpaired + + + + + The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape. + + 2018-11-19T21:49:07Z + quality + PATO:0040022 + flared + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body. + + 2018-11-19T21:54:33Z + disto-medial orientation + distomedial + quality + PATO:0040023 + distomedial orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body. + https://en.wiktionary.org/wiki/distomedial + + + + + + + + + The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism. + + paired + quality + PATO:0040024 + bilaterally paired + + + + + The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism. + https://orcid.org/0000-0003-3162-7490 + + + + A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present. - http://orcid.org/0000-0001-5208-3432 + quality PATO:0040025 lesioned @@ -49391,6 +49465,21 @@ height'). + + + + + A structural quality inhering in a bearer by virtue of the bearer's being marked by interruptions or gaps. + http://orcid.org/0000-0001-5208-3432 + structurally interrupted + quality + PATO:0040026 + This term is intended for use for terms such as MP:0010461 discontinuous pulmonary artery and MP:0004157 interrupted aortic arch. + structurally discontinuous + + + + diff --git a/pato-full.json b/pato-full.json index c9ab92e5..97a4a296 100644 --- a/pato-full.json +++ b/pato-full.json @@ -62,6 +62,20 @@ }, "type" : "CLASS", "lbl" : "obsolete unknown sex" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0010646", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of cell communication" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000487", "meta" : { @@ -85,6 +99,44 @@ }, "type" : "CLASS", "lbl" : "responsive to" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0044424", + "meta" : { + "definition" : { + "val" : "OBSOLETE. Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.", + "xrefs" : [ "GOC:jl" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", + "val" : "GO:0005622" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete intracellular part" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0010647", + "meta" : { + "definition" : { + "val" : "Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of cell communication" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000003", "meta" : { @@ -113,10 +165,6 @@ }, "type" : "CLASS", "lbl" : "yeast mating type" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0044424", - "type" : "CLASS", - "lbl" : "intracellular part" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001334", "meta" : { @@ -237,6 +285,20 @@ }, "type" : "CLASS", "lbl" : "mixed sex" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0010648", + "meta" : { + "definition" : { + "val" : "Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of cell communication" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001339", "meta" : { @@ -415,35 +477,38 @@ "type" : "CLASS", "lbl" : "obsolete value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000485", + "id" : "http://purl.obolibrary.org/obo/PATO_0000001", "meta" : { + "definition" : { + "val" : "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities", + "xrefs" : [ "PATOC:GVG" ] + }, "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "quality (PATO)" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000072" } ] }, "type" : "CLASS", - "lbl" : "obsolete mild response" + "lbl" : "quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000001", + "id" : "http://purl.obolibrary.org/obo/PATO_0000485", "meta" : { - "definition" : { - "val" : "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities", - "xrefs" : [ "PATOC:GVG" ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000072" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "quality" + "lbl" : "obsolete mild response" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001331", "meta" : { @@ -516,6 +581,23 @@ }, "type" : "CLASS", "lbl" : "color hue" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002286", + "meta" : { + "definition" : { + "val" : "Inverse of developmentally preceded by", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally succeeded by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001347", "meta" : { @@ -1550,6 +1632,28 @@ }, "type" : "CLASS", "lbl" : "obsolete relative compatability" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002264", + "meta" : { + "definition" : { + "val" : "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." + } ] + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of or within" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002216", "meta" : { @@ -1828,6 +1932,23 @@ }, "type" : "CLASS", "lbl" : "fan-shaped" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002263", + "meta" : { + "definition" : { + "val" : "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." + } ] + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001361", "meta" : { @@ -1999,6 +2120,32 @@ }, "type" : "CLASS", "lbl" : "punctiform" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002258", + "meta" : { + "definition" : { + "val" : "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "false" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "In general you should not use this relation to make assertions - use one of the more specific relations below this one" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally preceded by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000032", "meta" : { @@ -2180,6 +2327,26 @@ }, "type" : "CLASS", "lbl" : "increased flexibility" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002254", + "meta" : { + "definition" : { + "val" : "x has developmental contribution from y iff x has some part z such that z develops from y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has developmental contribution from" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000443", "meta" : { @@ -2239,6 +2406,24 @@ }, "type" : "CLASS", "lbl" : "polyphasic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002255", + "meta" : { + "definition" : { + "val" : "inverse of has developmental contribution from", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally contributes to" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000446", "meta" : { @@ -2317,9 +2502,38 @@ }, { "id" : "http://purl.obolibrary.org/obo/GO_0044464", "meta" : { + "definition" : { + "val" : "OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms.", + "xrefs" : [ "GOC:jl" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "xrefs" : [ { + "val" : "NIF_Subcellular:sao628508602" + } ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "protoplast", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasExactSynonym", + "val" : "cellular subcomponent", + "xrefs" : [ "NIF_Subcellular:sao628508602" ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", + "val" : "CL:0000000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://purl.obolibrary.org/obo/go.owl" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." } ] }, "type" : "CLASS", @@ -2664,11 +2878,6 @@ "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "flared", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -3325,6 +3534,27 @@ }, "type" : "CLASS", "lbl" : "obsolete marked" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002233", + "meta" : { + "definition" : { + "val" : "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "consumes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has input" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000468", "meta" : { @@ -3954,12 +4184,22 @@ }, { "id" : "http://purl.obolibrary.org/obo/RO_0002222", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." + }, { + "pred" : "http://purl.org/dc/terms/source", + "val" : "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" @@ -4063,6 +4303,53 @@ }, "type" : "CLASS", "lbl" : "actinomorphic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002217", + "meta" : { + "definition" : { + "val" : "x actively participates in y if and only if x participates in y and x realizes some active role", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "agent in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "actively participates in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002218", + "meta" : { + "definition" : { + "val" : "x has participant y if and only if x realizes some active role that inheres in y", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This may be obsoleted and replaced by the original 'has agent' relation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has agent" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'heart development' has active participant some Shh protein" + } ] + }, + "type" : "PROPERTY", + "lbl" : "obsolete has active participant" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000471", "meta" : { @@ -4121,6 +4408,38 @@ }, "type" : "CLASS", "lbl" : "increased amount" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002213", + "meta" : { + "definition" : { + "val" : "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002213" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "positively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "positively_regulates" + } ] + }, + "type" : "PROPERTY", + "lbl" : "positively regulates" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000473", "meta" : { @@ -4193,6 +4512,42 @@ }, "type" : "CLASS", "lbl" : "obsolete threshability value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002215", + "meta" : { + "definition" : { + "val" : "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. ", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/21208450" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has function realized in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "osteoclast SubClassOf 'capable of' some 'bone resorption'" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "RO_0000053 some (RO_0000054 only ?Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20123131" + } ] + }, + "type" : "PROPERTY", + "lbl" : "capable of" }, { "id" : "http://purl.obolibrary.org/obo/pato#towards", "meta" : { @@ -4234,6 +4589,29 @@ }, "type" : "CLASS", "lbl" : "pubescent hair" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002216", + "meta" : { + "definition" : { + "val" : "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has function in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + } ] + }, + "type" : "PROPERTY", + "lbl" : "capable of part of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000408", "meta" : { @@ -4420,6 +4798,56 @@ }, "type" : "CLASS", "lbl" : "branched" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002211", + "meta" : { + "definition" : { + "val" : "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002211" + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "false" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Tanya Berardini" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Hill" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Regulation precludes parthood; the regulatory process may not be within the regulated process." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GO" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "regulates" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "regulates (processual)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" + } ] + }, + "type" : "PROPERTY", + "lbl" : "regulates" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001730", "meta" : { @@ -4461,6 +4889,38 @@ }, "type" : "CLASS", "lbl" : "obsolete shape value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002212", + "meta" : { + "definition" : { + "val" : "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002212" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "negatively_regulates" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "negatively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "negatively regulates" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000885", "meta" : { @@ -4702,6 +5162,35 @@ }, "type" : "CLASS", "lbl" : "obsolete cytoplasmic male sterility value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002202", + "meta" : { + "definition" : { + "val" : "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This is the transitive form of the develops from relation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" + } ] + }, + "type" : "PROPERTY", + "lbl" : "develops from" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000880", "meta" : { @@ -4715,6 +5204,30 @@ }, "type" : "CLASS", "lbl" : "obsolete fertility value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002203", + "meta" : { + "definition" : { + "val" : "inverse of develops from", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" + } ] + }, + "type" : "PROPERTY", + "lbl" : "develops into" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000882", "meta" : { @@ -6442,6 +6955,20 @@ }, "type" : "CLASS", "lbl" : "obsolete flinch reflex value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043549", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.", + "xrefs" : [ "GOC:bf" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of kinase activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001718", "meta" : { @@ -6603,6 +7130,26 @@ }, "type" : "CLASS", "lbl" : "obsolete spinal reflex value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002630", + "meta" : { + "definition" : { + "val" : "Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly negatively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002578" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly negatively regulates" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000863", "meta" : { @@ -6753,6 +7300,45 @@ }, "type" : "CLASS", "lbl" : "obsolete postural reflex value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051174", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.", + "xrefs" : [ "GOC:ai" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of phosphorus metabolism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of phosphorus metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002629", + "meta" : { + "definition" : { + "val" : "Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly positively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002578" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly positively regulates" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001729", "meta" : { @@ -7070,6 +7656,35 @@ }, "type" : "CLASS", "lbl" : "obsolete relative neurobehavioral function value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040023", + "meta" : { + "definition" : { + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body.", + "xrefs" : [ "https://en.wiktionary.org/wiki/distomedial" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "distomedial", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "disto-medial orientation", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-19T21:54:33Z" + } ] + }, + "type" : "CLASS", + "lbl" : "distomedial orientation" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000804", "meta" : { @@ -7096,6 +7711,28 @@ }, "type" : "CLASS", "lbl" : "obsolete tactile response value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040024", + "meta" : { + "definition" : { + "val" : "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] + }, + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "paired", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0001-5208-3432" + } ] + }, + "type" : "CLASS", + "lbl" : "bilaterally paired" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000806", "meta" : { @@ -7109,6 +7746,23 @@ }, "type" : "CLASS", "lbl" : "obsolete olfactory value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040021", + "meta" : { + "definition" : { + "val" : "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism..", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0001-5208-3432" + } ] + }, + "type" : "CLASS", + "lbl" : "unpaired" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000805", "meta" : { @@ -7122,6 +7776,26 @@ }, "type" : "CLASS", "lbl" : "obsolete auditory value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040022", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-19T21:49:07Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0001-5208-3432" + } ] + }, + "type" : "CLASS", + "lbl" : "flared" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000808", "meta" : { @@ -7156,7 +7830,7 @@ "xrefs" : [ "NCIT:C3824" ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7178,6 +7852,31 @@ }, "type" : "CLASS", "lbl" : "obsolete taste value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040026", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being marked by interruptions or gaps.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "structurally interrupted", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is intended for use for terms such as MP:0010461 discontinuous pulmonary artery and MP:0004157 interrupted aortic arch." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "structurally discontinuous" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000800", "meta" : { @@ -7219,6 +7918,30 @@ "lbl" : "obsolete motor function value" }, { "id" : "http://purl.obolibrary.org/obo/GO_0016740", + "meta" : { + "definition" : { + "val" : "Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.", + "xrefs" : [ "ISBN:0198506732" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], + "xrefs" : [ { + "val" : "Reactome:R-HSA-5668414" + }, { + "val" : "Reactome:R-HSA-8868783" + }, { + "val" : "Reactome:R-HSA-1483089" + }, { + "val" : "Reactome:R-HSA-6787403" + }, { + "val" : "Reactome:R-HSA-1483186" + }, { + "val" : "EC:2" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + } ] + }, "type" : "CLASS", "lbl" : "transferase activity" }, { @@ -7293,6 +8016,41 @@ }, "type" : "CLASS", "lbl" : "obsolete relative odor acuity value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005622", + "meta" : { + "definition" : { + "val" : "The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.", + "xrefs" : [ "ISBN:0198506732" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "xrefs" : [ { + "val" : "Wikipedia:Intracellular" + } ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "nucleocytoplasm", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "protoplast", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasExactSynonym", + "val" : "internal to cell", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "protoplasm", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "intracellular" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000819", "meta" : { @@ -7308,6 +8066,25 @@ "lbl" : "obsolete quantity" }, { "id" : "http://purl.obolibrary.org/obo/GO_0005623", + "meta" : { + "definition" : { + "val" : "The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.", + "xrefs" : [ "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "xrefs" : [ { + "val" : "NIF_Subcellular:sao1813327414" + }, { + "val" : "Wikipedia:Cell_(biology)" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "cell and encapsulating structures" + } ] + }, "type" : "CLASS", "lbl" : "cell" }, { @@ -8913,6 +9690,37 @@ }, "type" : "PROPERTY", "lbl" : "has_dividend_entity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051100", + "meta" : { + "definition" : { + "val" : "Any process that stops or reduces the rate or extent of binding, the selective interaction 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enables f, and f is causally upstream of p, and the direction of f is positive", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-26T23:53:14Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of,_positive_effect" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002263" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + } ] + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of, positive effect" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002108", "meta" : { @@ -10400,6 +11450,22 @@ }, "type" : "CLASS", "lbl" : "caseous" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0004033", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : 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formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.", + "xrefs" : [ "ISBN:0198506732" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "xrefs" : [ { + "val" : "Wikipedia:Phosphorylation" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "phosphorylation" }, { "id" : "http://purl.obolibrary.org/obo/GO_0005634", "meta" : { + "definition" : { + "val" : "A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.", + "xrefs" : [ "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "xrefs" : [ { + "val" : "MIPS_funcat:70.10" + }, { + "val" : "Wikipedia:Cell_nucleus" + }, { + "val" : "NIF_Subcellular:sao1702920020" + } ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "cell nucleus", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "horsetail nucleus", + "xrefs" : [ "GOC:al", "GOC:mah", "GOC:vw", "PMID:15030757" ] + } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", "val" : "http://purl.obolibrary.org/obo/go.owl" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" } ] }, "type" : "CLASS", @@ -11456,6 +12588,58 @@ }, "type" : "CLASS", "lbl" : "desaturated cyan" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0023056", + "meta" : { + "definition" : { + "val" : "Any process that activates, maintains or increases the frequency, rate or extent of a signaling process.", + "xrefs" : [ "GOC:mtg_signal" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "positive regulation of signalling process", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "positive regulation of signaling process", + "xrefs" : [ "GOC:bf" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-02-16T09:30:50Z" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of signaling" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0023057", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process.", + "xrefs" : [ "GOC:mtg_signal" ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "negative regulation of signalling process", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "negative regulation of signaling process", + "xrefs" : [ "GOC:bf" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-02-16T09:30:50Z" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of signaling" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002139", "meta" : { @@ -11527,6 +12711,83 @@ }, "type" : "CLASS", "lbl" : "edibility" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0023052", + "meta" : { + "definition" : { + "val" : "The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered.", + "xrefs" : [ "GOC:mtg_signal", "GOC:mtg_signaling_feb11", "GOC:signaling" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pombe", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_agr" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "single organism signaling", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "signalling", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "biological signaling", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "signalling process", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasExactSynonym", + "val" : "signaling process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044700" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-02-16T09:30:50Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0023046" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "janelomax" + } ] + }, + "type" : "CLASS", + "lbl" : "signaling" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0023051", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of a signaling process.", + "xrefs" : [ "GOC:mtg_signal" ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "regulation of signalling process", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "regulation of signaling process", + "xrefs" : [ "GOC:bf" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-02-16T09:30:50Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of signaling" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002131", "meta" : { @@ -11828,6 +13089,23 @@ "lbl" : "red brown" }, { "id" : "http://purl.obolibrary.org/obo/GO_0016772", + "meta" : { + "definition" : { + "val" : "Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).", + "xrefs" : [ "GOC:jl", "ISBN:0198506732" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "xrefs" : [ { + "val" : "EC:2.7" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + } ] + }, "type" : "CLASS", "lbl" : "transferase activity, transferring phosphorus-containing groups" }, { @@ -12120,6 +13398,26 @@ } ] }, "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0065009", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.", + "xrefs" : [ "GOC:isa_complete" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of a molecular function", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of molecular function" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000361", "meta" : { @@ -12133,6 +13431,26 @@ }, "type" : "CLASS", "lbl" : "obsolete gel consistency value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0065007", + "meta" : { + "definition" : { + "val" : "Any process that modulates a measurable attribute of any biological process, quality or function.", + "xrefs" : [ "GOC:dph", "GOC:isa_complete", "GOC:mah", "GOC:pr", "GOC:vw" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "regulation", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "biological regulation" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001690", "meta" : { @@ -12593,6 +13911,28 @@ }, "type" : "CLASS", "lbl" : "obsolete distance value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043227", + "meta" : { + "definition" : { + "val" : "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.", + "xrefs" : [ "GOC:go_curators" ] + }, + "xrefs" : [ { + "val" : "NIF_Subcellular:sao414196390" + } ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "membrane-enclosed organelle", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "membrane-bounded organelle" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000374", "meta" : { @@ -12616,10 +13956,6 @@ }, "type" : "CLASS", "lbl" : "increased distance" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0043227", - "type" : "CLASS", - "lbl" : "membrane-bounded organelle" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001222", "meta" : { @@ -12633,6 +13969,26 @@ }, "type" : "CLASS", "lbl" : "obsolete solid_angle_unit" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043226", + "meta" : { + "definition" : { + "val" : "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane.", + "xrefs" : [ "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "xrefs" : [ { + "val" : "Wikipedia:Organelle" + }, { + "val" : "NIF_Subcellular:sao1539965131" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "organelle" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000373", "meta" : { @@ -12660,9 +14016,20 @@ "type" : "CLASS", "lbl" : "obsolete quantitative value" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0043226", + "id" : "http://purl.obolibrary.org/obo/GO_0043229", + "meta" : { + "definition" : { + "val" : "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.", + "xrefs" : [ "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, "type" : "CLASS", - "lbl" : "organelle" + "lbl" : "intracellular organelle" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000376", "meta" : { @@ -12689,10 +14056,6 @@ }, "type" : "CLASS", "lbl" : "obsolete angle_unit" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0043229", - "type" : "CLASS", - "lbl" : "intracellular organelle" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001221", "meta" : { @@ -12860,6 +14223,22 @@ "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/GO_0043231", + "meta" : { + "definition" : { + "val" : "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.", + "xrefs" : [ "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "intracellular membrane-enclosed organelle", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, "type" : "CLASS", "lbl" : "intracellular membrane-bounded organelle" }, { @@ -13116,6 +14495,16 @@ }, "type" : "CLASS", "lbl" : "obsolete heat insentive" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000412", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "imported from" }, { "id" : "http://purl.obolibrary.org/obo/pato#relational_slim", "meta" : { @@ -13139,6 +14528,23 @@ "id" : "http://purl.obolibrary.org/obo/IAO_0100001", "type" : "PROPERTY", "lbl" : "term replaced by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002385", + "meta" : { + "definition" : { + "val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to developmentally contribute to" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001248", "meta" : { @@ -13182,6 +14588,23 @@ }, "type" : "CLASS", "lbl" : "dark green" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002387", + "meta" : { + "definition" : { + "val" : "x has the potential to develop into y iff x develops into y or if x is capable of developing into y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to develop into" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001246", "meta" : { @@ -13197,6 +14620,23 @@ }, "type" : "CLASS", "lbl" : "light brown" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002388", + "meta" : { + "definition" : { + "val" : "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to directly develop into" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001247", "meta" : { @@ -13212,6 +14652,23 @@ }, "type" : "CLASS", "lbl" : "light cyan" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002384", + "meta" : { + "definition" : { + "val" : "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has developmental potential involving" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000392", "meta" : { @@ -14132,6 +15589,66 @@ }, "type" : "CLASS", "lbl" : "increased resistance to" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0032991", + "meta" : { + "definition" : { + "val" : "A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.", + "xrefs" : [ "GOC:dos", "GOC:mah" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "protein complex", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "protein containing complex", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "protein-protein complex", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "macromolecule complex", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "macromolecular complex", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0043234" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole." + } ] + }, + "type" : "CLASS", + "lbl" : "protein-containing complex" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016020", + "meta" : { + "definition" : { + "val" : "A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.", + "xrefs" : [ "GOC:dos", "GOC:mah", "ISBN:0815316194" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "xrefs" : [ { + "val" : "Wikipedia:Biological_membrane" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "membrane" }, { "id" : "http://purl.obolibrary.org/obo/CARO_0000014", "meta" : { @@ -14794,6 +16311,21 @@ }, "type" : "CLASS", "lbl" : "mesiolateral orientation" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002352", + "meta" : { + "definition" : { + "val" : "inverse of has input", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "input of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000345", "meta" : { @@ -15822,6 +17354,24 @@ }, "type" : "CLASS", "lbl" : "obsolete electrolyte composition value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002334", + "meta" : { + "definition" : { + "val" : "inverse of regulates", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "regulated by (processual)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "regulated by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002531", "meta" : { @@ -15957,6 +17507,21 @@ }, "type" : "CLASS", "lbl" : "magnetic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002335", + "meta" : { + "definition" : { + "val" : "inverse of negatively regulates", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "negatively regulated by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001682", "meta" : { @@ -15985,6 +17550,21 @@ }, "type" : "CLASS", "lbl" : "obsolete protein composition value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002336", + "meta" : { + "definition" : { + "val" : "inverse of positively regulates", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "positively regulated by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000353", "meta" : { @@ -16166,6 +17746,29 @@ }, "type" : "CLASS", "lbl" : "obsolete impaired" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002331", + "meta" : { + "definition" : { + "val" : "c involved_in p if and only if c enables some process p', and p' is part of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "enables part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "actively involved in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Involved_in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001612", "meta" : { @@ -16232,6 +17835,20 @@ }, "type" : "CLASS", "lbl" : "passive" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002333", + "meta" : { + "definition" : { + "val" : "inverse of enables", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "enabled by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001615", "meta" : { @@ -16437,6 +18054,111 @@ }, "type" : "CLASS", "lbl" : "obsolete decreased consumption" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002327", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is catalyzing" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "a particular instances of akt-2 enables some instance of protein kinase activity" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "catalyzes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is executing" + } ] + }, + "type" : "PROPERTY", + "lbl" : "enables" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002328", + "meta" : { + "definition" : { + "val" : "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This is a grouping relation that collects relations used for the purpose of connecting structure and function" + } ] + }, + "type" : "PROPERTY", + "lbl" : "functionally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002329", + "meta" : { + "definition" : { + "val" : "this relation holds between c and p when c is part of some c', and c' is capable of p.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "false" + } ] + }, + "type" : "PROPERTY", + "lbl" : "part of structure that is capable of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002323", + "meta" : { + "definition" : { + "val" : "A mereological relationship or a topological relationship", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" + } ] + }, + "type" : "PROPERTY", + "lbl" : "mereotopologically related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002324", + "meta" : { + "definition" : { + "val" : "A relationship that holds between entities participating in some developmental process (GO:0032502)", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally related to" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000761", "meta" : { @@ -16865,6 +18587,32 @@ }, "type" : "CLASS", "lbl" : "indifference" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002314", + "meta" : { + "definition" : { + "val" : "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + } ] + }, + "type" : "PROPERTY", + "lbl" : "inheres in part of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000771", "meta" : { @@ -17301,6 +19049,22 @@ }, "type" : "CLASS", "lbl" : "obsolete absolute age value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002305", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y" + }, { + "pred" : "http://purl.org/dc/terms/creator", + "val" : "cjm" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of, negative effect" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000781", "meta" : { @@ -17355,6 +19119,22 @@ }, "type" : "CLASS", "lbl" : "obsolete digestive function value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002304", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y" + }, { + "pred" : "http://purl.org/dc/terms/creator", + "val" : "cjm" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of, positive effect" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000782", "meta" : { @@ -17368,6 +19148,35 @@ }, "type" : "CLASS", "lbl" : "obsolete defensive function value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0098796", + "meta" : { + "definition" : { + "val" : "Any protein complex that is part of a membrane.", + "xrefs" : [ "GOC:dos" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "membrane protein complex" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0098797", + "meta" : { + "definition" : { + "val" : "Any protein complex that is part of the plasma membrane.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "plasma membrane protein complex" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000319", "meta" : { @@ -17888,6 +19697,24 @@ }, "type" : "CLASS", "lbl" : "obsolete high yield" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0007154", + "meta" : { + "definition" : { + "val" : "Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", + "xrefs" : [ "GOC:mah" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "xrefs" : [ { + "val" : "Wikipedia:Cell_signaling" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "cell communication" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000722", "meta" : { @@ -17927,6 +19754,86 @@ }, "type" : "CLASS", "lbl" : "obsolete low yield" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0042325", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule.", + "xrefs" : [ "GOC:jl" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of phosphorylation" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0042327", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule.", + "xrefs" : [ "GOC:jl" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "up regulation of phosphorylation", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of phosphorylation", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of phosphorylation", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of phosphorylation", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of phosphorylation", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of phosphorylation" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0042326", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule.", + "xrefs" : [ "GOC:jl" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "downregulation of phosphorylation", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of phosphorylation", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of phosphorylation", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of phosphorylation", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of phosphorylation" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000738", "meta" : { @@ -18031,6 +19938,49 @@ }, "type" : "CLASS", "lbl" : "obsolete piloerection value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0007165", + "meta" : { + "definition" : { + "val" : "The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.", + "xrefs" : [ "GOC:go_curators", "GOC:mtg_signaling_feb11" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_aspergillus" ], + "xrefs" : [ { + "val" : "Wikipedia:Signal_transduction" + }, { + "val" : "MIPS_funcat:30" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "signalling cascade", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "signalling pathway", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "signaling cascade", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "signaling pathway", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that signal transduction is defined broadly to include a ligand interacting with a receptor, downstream signaling steps and a response being triggered. A change in form of the signal in every step is not necessary. Note that in many cases the end of this process is regulation of the initiation of transcription. Note that specific transcription factors may be annotated to this term, but core/general transcription machinery such as RNA polymerase should not." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0023033" + } ] + }, + "type" : "CLASS", + "lbl" : "signal transduction" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000736", "meta" : { @@ -18498,6 +20448,29 @@ }, "type" : "CLASS", "lbl" : "obsolete learning and memory value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0050789", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.", + "xrefs" : [ "GOC:ai", "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of physiological process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0050791" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of biological process" }, { "id" : "http://purl.obolibrary.org/obo/CL_0000000", "meta" : { @@ -18508,10 +20481,165 @@ }, "type" : "CLASS", "lbl" : "cell" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0050794", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.", + "xrefs" : [ "GOC:go_curators" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of cellular physiological process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0051244" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of cellular process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_1900121", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor.", + "xrefs" : [ "GOC:TermGenie", "GOC:signaling" ] + }, + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of receptor ligand", + "xrefs" : [ "GOC:TermGenie" ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "down regulation of receptor-associated protein activity", + "xrefs" : [ "GOC:TermGenie" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-02-22T11:40:57Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "bf" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of receptor binding" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_1900120", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor.", + "xrefs" : [ "GOC:TermGenie", "GOC:signaling" ] + }, + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "regulation of receptor ligand", + "xrefs" : [ "GOC:TermGenie" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "bf" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-02-22T11:40:53Z" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of receptor binding" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_1900122", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor.", + "xrefs" : [ "GOC:TermGenie", "GOC:signaling" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "upregulation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-02-22T11:41:00Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "bf" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of receptor binding" }, { "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", "type" : "PROPERTY", "lbl" : "has_related_synonym" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0050790", + "meta" : { + "definition" : { + "val" : "Any process that modulates the activity of an enzyme.", + "xrefs" : [ "GOC:ai", "GOC:ebc", "GOC:vw" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "xrefs" : [ { + "val" : "MIPS_funcat:18.02.01" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "regulation of metalloenzyme activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "regulation of enzyme activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0048552" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of catalytic activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000705", "meta" : { @@ -18690,6 +20818,72 @@ }, "type" : "CLASS", "lbl" : "obsolete threshold value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0032092", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of protein binding.", + "xrefs" : [ "GOC:mah" ] + }, + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of protein binding", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of protein binding" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0032091", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding.", + "xrefs" : [ "GOC:mah" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "downregulation of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of protein binding", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of protein binding" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000716", "meta" : { @@ -18763,6 +20957,21 @@ }, "type" : "CLASS", "lbl" : "viable" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0004872", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/GO_0038023" + } ] + }, + "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000710", "meta" : { @@ -18776,6 +20985,50 @@ }, "type" : "CLASS", "lbl" : "obsolete time value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0048018", + "meta" : { + "definition" : { + "val" : "The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands).", + "xrefs" : [ "GOC:kv", "GOC:molecular_function_refactoring", "GOC:pdt" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "receptor agonist activity", + "xrefs" : [ "GOC:molecular_function_refactoring" ] + }, { + "pred" : "hasExactSynonym", + "val" : "signaling molecule", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "signaling receptor ligand activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "vitamin D receptor activator activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-13T04:51:59Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Definition discussed in https://github.com/geneontology/go-ontology/issues/14220" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "midori" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0071884" + } ] + }, + "type" : "CLASS", + "lbl" : "receptor ligand activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000712", "meta" : { @@ -19039,6 +21292,21 @@ }, "type" : "CLASS", "lbl" : "absorption wavelength" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0098772", + "meta" : { + "definition" : { + "val" : "A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators.", + "xrefs" : [ "GOC:dos", "GOC:pt" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + } ] + }, + "type" : "CLASS", + "lbl" : "molecular function regulator" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002076", "meta" : { @@ -19573,6 +21841,71 @@ }, "type" : "CLASS", "lbl" : "neoplastic, malignant" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0035556", + "meta" : { + "definition" : { + "val" : "The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.", + "xrefs" : [ "GOC:bf", "GOC:jl", "GOC:signaling", "ISBN:3527303782" ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "intracellular signaling cascade", + "xrefs" : [ "GOC:signaling" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "signal transduction via intracellular signaling cascade", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "intracellular signal transduction pathway", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "signal transmission via intracellular cascade", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "intracellular protein kinase cascade", + "xrefs" : [ "GOC:signaling" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "protein kinase cascade", + "xrefs" : [ "GOC:signaling" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "intracellular signaling pathway", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "intracellular signaling chain", + "xrefs" : [ "ISBN:3527303782" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-05-14T01:14:37Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0023034" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "rfoulger" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0007242" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0007243" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0023013" + } ] + }, + "type" : "CLASS", + "lbl" : "intracellular signal transduction" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002090", "meta" : { @@ -20198,6 +22531,20 @@ }, "type" : "CLASS", "lbl" : "specificity to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001900", + "meta" : { + "definition" : { + "val" : "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/ROAndTime" + } ] + }, + "type" : "PROPERTY", + "lbl" : "temporal interpretation" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001183", "meta" : { @@ -20232,6 +22579,16 @@ }, "type" : "CLASS", "lbl" : "upturned" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001901", + "meta" : { + "definition" : { + "val" : "\n\n## Elucidation\n\nThis is used when the statement/axiom is assumed to hold true 'eternally'\n\n## How to interpret (informal)\n\nFirst the \"atemporal\" FOL is derived from the OWL using the standard\ninterpretation. This axiom is temporalized by embedding the axiom\nwithin a for-all-times quantified sentence. The t argument is added to\nall instantiation predicates and predicates that use this relation.\n\n## Example\n\n Class: nucleus\n SubClassOf: part_of some cell\n\n forall t :\n forall n :\n instance_of(n,Nucleus,t)\n implies\n exists c :\n instance_of(c,Cell,t)\n part_of(n,c,t)\n\n## Notes\n\nThis interpretation is *not* the same as an at-all-times relation\n\n", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "axiom holds for all times" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001184", "meta" : { @@ -22678,6 +25035,46 @@ }, "type" : "CLASS", "lbl" : "poorly ossified" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0044092", + "meta" : { + "definition" : { + "val" : "Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.", + "xrefs" : [ "GO:jl" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-04-21T04:07:27Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "jane" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of molecular function" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0044093", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.", + "xrefs" : [ "GO:jl" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-04-21T04:11:06Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "jane" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of molecular function" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002018", "meta" : { @@ -23588,6 +25985,56 @@ }, "type" : "CLASS", "lbl" : "having decreased processual parts" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0009892", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", + "xrefs" : [ "GOC:go_curators" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "down regulation of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of organismal metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "negative regulation of organismal metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "negative regulation of metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "negative regulation of multicellular organismal metabolic process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044252" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of metabolic process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001571", "meta" : { @@ -23603,6 +26050,64 @@ }, "type" : "CLASS", "lbl" : "dilated" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0009893", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", + "xrefs" : [ "GOC:go_curators" ] + }, + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "positive regulation of organismal metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of organismal metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "positive regulation of multicellular organismal metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "positive regulation of metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "up-regulation of organismal metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of metabolic process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044253" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of metabolic process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000240", "meta" : { @@ -24496,6 +27001,130 @@ }, "type" : "CLASS", "lbl" : "obsolete vibrissae reflex" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0019222", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", + "xrefs" : [ "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "regulation of organismal metabolic process", + "xrefs" : [ "GOC:tb" ] + }, { + "pred" : "hasExactSynonym", + "val" : "regulation of metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "regulation of multicellular organismal metabolic process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044246" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0019220", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates.", + "xrefs" : [ "GOC:go_curators" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of phosphate metabolism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of phosphate metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0031324", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.", + "xrefs" : [ "GOC:mah" ] + }, + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "negative regulation of cellular metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of cellular metabolic process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of cellular metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0031325", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.", + "xrefs" : [ "GOC:mah" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "upregulation of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "positive regulation of cellular metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of cellular metabolic process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of cellular metabolic process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001116", "meta" : { @@ -25179,6 +27808,25 @@ }, "type" : "CLASS", "lbl" : "unornamented" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0031323", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.", + "xrefs" : [ "GOC:mah" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of cellular metabolism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of cellular metabolic process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002458", "meta" : { @@ -25215,6 +27863,22 @@ }, "type" : "CLASS", "lbl" : "male fertility" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002022", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:24Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly regulated by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001127", "meta" : { @@ -25262,6 +27926,23 @@ }, "type" : "CLASS", "lbl" : "obsolete hybrid fertility" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002023", + "meta" : { + "definition" : { + "val" : "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:38Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly negatively regulated by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001128", "meta" : { @@ -25309,6 +27990,23 @@ }, "type" : "CLASS", "lbl" : "inflorescence-like" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002024", + "meta" : { + "definition" : { + "val" : "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly positively regulated by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002457", "meta" : { @@ -25330,6 +28028,26 @@ }, "type" : "CLASS", "lbl" : "leaf-like" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002025", + "meta" : { + "definition" : { + "val" : "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-22T14:14:36Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has effector activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001126", "meta" : { @@ -25390,6 +28108,23 @@ }, "type" : "CLASS", "lbl" : "firm" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002019", + "meta" : { + "definition" : { + "val" : "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-07-19T17:30:36Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has ligand" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002451", "meta" : { @@ -25465,6 +28200,26 @@ }, "type" : "CLASS", "lbl" : "obsolete relative neurobehavioral function" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002015", + "meta" : { + "definition" : { + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:17Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has positive regulatory component activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002454", "meta" : { @@ -25574,6 +28329,22 @@ }, "type" : "CLASS", "lbl" : "obsolete power value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002017", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:44:33Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B." + } ] + }, + "type" : "PROPERTY", + "lbl" : "has component activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002452", "meta" : { @@ -25613,6 +28384,23 @@ }, "type" : "CLASS", "lbl" : "female fertility" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002018", + "meta" : { + "definition" : { + "val" : "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:49:21Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has component process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000276", "meta" : { @@ -25830,6 +28618,23 @@ }, "type" : "CLASS", "lbl" : "obsolete absolute locomotor_activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002013", + "meta" : { + "definition" : { + "val" : "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:30:46Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has regulatory component activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000203", "meta" : { @@ -25876,6 +28681,26 @@ }, "type" : "CLASS", "lbl" : "obsolete relative rate value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002014", + "meta" : { + "definition" : { + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:01Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has negative regulatory component activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001538", "meta" : { @@ -26221,6 +29046,29 @@ }, "type" : "CLASS", "lbl" : "obsolete neurobehavioral function" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0044237", + "meta" : { + "definition" : { + "val" : "The chemical reactions and pathways by which individual cells transform chemical substances.", + "xrefs" : [ "GOC:go_curators" ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "intermediary metabolism", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasExactSynonym", + "val" : "cellular metabolism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "cellular metabolic process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001546", "meta" : { @@ -26433,6 +29281,16 @@ }, "type" : "CLASS", "lbl" : "obsolete heart rate" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002481", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is kinase activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000219", "meta" : { @@ -26501,6 +29359,22 @@ "lbl" : "obsolete repair function" }, { "id" : "http://purl.obolibrary.org/obo/GO_0120025", + "meta" : { + "definition" : { + "val" : "A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon.", + "xrefs" : [ "GOC:krc" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-03-21T17:26:07Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "kchris" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, "type" : "CLASS", "lbl" : "plasma membrane bounded cell projection" }, { @@ -26647,6 +29521,21 @@ }, "type" : "CLASS", "lbl" : "heterochronic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002479", + "meta" : { + "definition" : { + "val" : "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has part that occurs in" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0010003", "meta" : { @@ -26789,6 +29678,20 @@ } ] }, "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043393", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of protein binding.", + "xrefs" : [ "GOC:go_curators" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of protein binding" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002409", "meta" : { @@ -26848,6 +29751,30 @@ } ] }, "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002473", + "meta" : { + "definition" : { + "val" : "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + } ] + }, + "type" : "PROPERTY", + "lbl" : "composed primarily of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002403", "meta" : { @@ -27401,6 +30328,32 @@ }, "type" : "CLASS", "lbl" : "increased sensitivity of a process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005488", + "meta" : { + "definition" : { + "val" : "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.", + "xrefs" : [ "GOC:ceb", "GOC:mah", "ISBN:0198506732" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], + "xrefs" : [ { + "val" : "Wikipedia:Binding_(molecular)" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "ligand", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children." + } ] + }, + "type" : "CLASS", + "lbl" : "binding" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002414", "meta" : { @@ -27523,6 +30476,19 @@ }, "type" : "CLASS", "lbl" : "dark yellow brown" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002464", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." + } ] + }, + "type" : "PROPERTY", + "lbl" : "helper property (not for use in curation)" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001565", "meta" : { @@ -28247,6 +31213,28 @@ }, "type" : "CLASS", "lbl" : "obstructed" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002450", + "meta" : { + "definition" : { + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly increases activity of", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "activates" + } ] + }, + "type" : "PROPERTY", + "lbl" : "activity directly positively regulates activity of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001977", "meta" : { @@ -28282,6 +31270,47 @@ }, "type" : "CLASS", "lbl" : "necrotic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002448", + "meta" : { + "definition" : { + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly controls", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "activity directly regulates activity of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002449", + "meta" : { + "definition" : { + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly decreases activity of", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "inhibits" + } ] + }, + "type" : "PROPERTY", + "lbl" : "activity directly negatively regulates activity of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001970", "meta" : { @@ -28332,10 +31361,70 @@ }, "type" : "CLASS", "lbl" : "dysplastic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002447", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Axiomatization to GO to be added later" + } ] + }, + "type" : "PROPERTY", + "lbl" : "phosphorylates" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000116", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "editor note" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000117", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "term editor" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000114", + "type" : "PROPERTY", + "lbl" : "has curation status" }, { "id" : "http://purl.obolibrary.org/obo/IAO_0000115", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, "type" : "PROPERTY", "lbl" : "definition" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000112", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "example of usage" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000111", + "type" : "PROPERTY", + "lbl" : "editor preferred term" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001509", "meta" : { @@ -28381,6 +31470,26 @@ } ] }, "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000118", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "alternative term" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000119", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "definition source" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001985", "meta" : { @@ -28749,6 +31858,41 @@ }, "type" : "CLASS", "lbl" : "auriculate" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002434", + "meta" : { + "definition" : { + "val" : "A relationship that holds between two entities in which the processes executed by the two entities are causally connected.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "in pairwise interaction with", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0914" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Considering relabeling as 'pairwise interacts with'" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." + }, { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." + } ] + }, + "type" : "PROPERTY", + "lbl" : "interacts with" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001982", "meta" : { @@ -28802,6 +31946,32 @@ }, "type" : "CLASS", "lbl" : "digitate" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002436", + "meta" : { + "definition" : { + "val" : "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "molecularly binds with" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/ECO_0000353" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0915" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "binds" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecularly interacts with" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000650", "meta" : { @@ -28817,6 +31987,16 @@ } ] }, "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000125", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "pending final vetting" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001518", "meta" : { @@ -28948,6 +32128,23 @@ }, "type" : "CLASS", "lbl" : "decreased amount" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002430", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in negative regulation of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000663", "meta" : { @@ -28989,6 +32186,26 @@ }, "type" : "CLASS", "lbl" : "obsolete energy_quantity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002431", + "meta" : { + "definition" : { + "val" : "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "involved in or reguates" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "OWL does not allow defining object properties via a Union" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in or involved in regulation of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001510", "meta" : { @@ -29083,6 +32300,34 @@ }, "type" : "CLASS", "lbl" : "non-functional" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002432", + "meta" : { + "definition" : { + "val" : "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.", + "xrefs" : [ "GOC:cjm", "GOC:dos" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "enables activity in", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes activity in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A protein that enables activity in a cytosol." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is active in" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001995", "meta" : { @@ -29238,10 +32483,238 @@ }, "type" : "CLASS", "lbl" : "obsolete concentration_unit" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0008152", + "meta" : { + "definition" : { + "val" : "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.", + "xrefs" : [ "GOC:go_curators", "ISBN:0198547684" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "xrefs" : [ { + "val" : "MIPS_funcat:01" + }, { + "val" : "Wikipedia:Metabolism" + } ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "single-organism metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "metabolism resulting in cell growth", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "metabolic process resulting in cell growth", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "multicellular organism metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "metabolism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044710" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "janelomax" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044236" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-10-17T15:46:40Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002427", + "meta" : { + "definition" : { + "val" : "inverse of causally upstream of or within", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally downstream of or within" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0045936", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates.", + "xrefs" : [ "GOC:go_curators" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "downregulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "negative regulation of phosphate metabolism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of phosphate metabolic process" }, { "id" : "http://purl.obolibrary.org/obo/GO_0008150", + "meta" : { + "definition" : { + "val" : "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.", + "xrefs" : [ "GOC:pdt" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_pombe", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_candida" ], + "xrefs" : [ { + "val" : "Wikipedia:Biological_process" + } ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "single organism process", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "single-organism process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "physiological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "biological process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-09-19T15:05:24Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code \"no data\" (ND), is used to indicate this." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044699" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "janelomax" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0007582" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0000004" + } ] + }, "type" : "CLASS", "lbl" : "biological_process" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002428", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some p' and p' regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002429", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some p' and p' positively regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in positive regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0045937", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates.", + "xrefs" : [ "GOC:go_curators" ] + }, + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "activation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "positive regulation of phosphate metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of phosphate metabolic process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of phosphate metabolic process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001992", "meta" : { @@ -29582,6 +33055,31 @@ }, "type" : "CLASS", "lbl" : "ultrasonic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002418", + "meta" : { + "definition" : { + "val" : "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "influences (processual)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of or within" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000671", "meta" : { @@ -29595,6 +33093,43 @@ }, "type" : "CLASS", "lbl" : "obsolete water value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002411", + "meta" : { + "definition" : { + "val" : "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002412", + "meta" : { + "definition" : { + "val" : "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately causally upstream of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001520", "meta" : { @@ -29872,6 +33407,29 @@ }, "type" : "CLASS", "lbl" : "increased width" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002410", + "meta" : { + "definition" : { + "val" : "This relation groups causal relations between material entities and causal relations between processes", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally related to" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000602", "meta" : { @@ -29989,6 +33547,36 @@ }, "type" : "CLASS", "lbl" : "opposite" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002404", + "meta" : { + "definition" : { + "val" : "inverse of upstream of", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally downstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002405", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately causally downstream of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000617", "meta" : { @@ -31223,12 +34811,133 @@ }, "type" : "CLASS", "lbl" : "interdigitated" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000589", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "OBO foundry unique label" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0048585", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.", + "xrefs" : [ "GOC:jid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of response to stimulus", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of response to stimulus" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0048584", + "meta" : { + "definition" : { + "val" : "Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.", + "xrefs" : [ "GOC:jid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "upregulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of response to stimulus", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of response to stimulus" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0048583", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.", + "xrefs" : [ "GOC:jid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of response to stimulus" }, { "id" : "http://purl.obolibrary.org/obo/GO_0003674", "meta" : { + "definition" : { + "val" : "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.", + "xrefs" : [ "GOC:pdt" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecular function", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "molecular process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0005554" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code \"no data\" (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex." } ] }, "type" : "CLASS", @@ -32198,6 +35907,111 @@ }, "type" : "CLASS", "lbl" : "obsolete flux value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051338", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.", + "xrefs" : [ "EC:2.-.-.-", "GOC:ai" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "transferase regulator", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead." + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of transferase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051347", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor.", + "xrefs" : [ "GOC:ai" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "activation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "transferase activator", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of transferase activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead." + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of transferase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051348", + "meta" : { + "definition" : { + "val" : "Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor.", + "xrefs" : [ "GOC:ai" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "transferase inhibitor", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of transferase activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead." + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of transferase activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0005008", "meta" : { @@ -32816,6 +36630,52 @@ }, "type" : "CLASS", "lbl" : "obsolete relative susceptibility" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0006796", + "meta" : { + "definition" : { + "val" : "The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid.", + "xrefs" : [ "GOC:ai" ] + }, + "xrefs" : [ { + "val" : "MIPS_funcat:01.04" + } ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "phosphate metabolism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "phosphate-containing compound metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0006793", + "meta" : { + "definition" : { + "val" : "The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4).", + "xrefs" : [ "GOC:ai" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "phosphorus metabolism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "phosphorus metabolic process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002395", "meta" : { @@ -32992,6 +36852,45 @@ }, "type" : "CLASS", "lbl" : "anteromedially rotated" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0048519", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.", + "xrefs" : [ "GOC:jid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "down regulation of biological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of biological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of biological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "negative regulation of physiological process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of biological process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0043118" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of biological process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001069", "meta" : { @@ -33018,6 +36917,49 @@ }, "type" : "CLASS", "lbl" : "obsolete absolute stiffness" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0048518", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.", + "xrefs" : [ "GOC:jid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "up regulation of biological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of biological process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of biological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of biological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "positive regulation of physiological process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of biological process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0043119" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of biological process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002397", "meta" : { @@ -33173,6 +37115,86 @@ }, "type" : "CLASS", "lbl" : "radius" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0048523", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.", + "xrefs" : [ "GOC:jid" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "downregulation of cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "negative regulation of cellular physiological process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0051243" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of cellular process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0048522", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.", + "xrefs" : [ "GOC:jid" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "up regulation of cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "positive regulation of cellular physiological process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of cellular process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0051242" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of cellular process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001075", "meta" : { @@ -33553,7 +37575,11 @@ }, { "id" : "http://purl.obolibrary.org/obo/RO_0002090", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/BFO_0000063" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Osumi-Sutherland" }, { @@ -33773,6 +37799,24 @@ }, "type" : "CLASS", "lbl" : "obsolete absolute occurence value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051716", + "meta" : { + "definition" : { + "val" : "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.", + "xrefs" : [ "GOC:bf", "GOC:jl" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "cellular response to stimulus" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001019", "meta" : { @@ -34601,6 +38645,7 @@ }, { "id" : "http://purl.obolibrary.org/obo/RO_0002086", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "David Osumi-Sutherland" @@ -35974,6 +40019,91 @@ }, "type" : "CLASS", "lbl" : "obsolete body tone" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0050896", + "meta" : { + "definition" : { + "val" : "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.", + "xrefs" : [ "GOC:ai", "GOC:bf" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_agr" ], + "xrefs" : [ { + "val" : "MIPS_funcat:34.11" + } ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "physiological response to stimulus", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0051869" + } ] + }, + "type" : "CLASS", + "lbl" : "response to stimulus" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005886", + "meta" : { + "definition" : { + "val" : "The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.", + "xrefs" : [ "ISBN:0716731363" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], + "xrefs" : [ { + "val" : "NIF_Subcellular:sao1663586795" + }, { + "val" : "Wikipedia:Cell_membrane" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "inner endospore membrane", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "plasmalemma", + "xrefs" : [ ] + }, { + "pred" : "hasBroadSynonym", + "val" : "juxtamembrane", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "cellular membrane", + "xrefs" : [ "NIF_Subcellular:sao6433132645" ] + }, { + "pred" : "hasExactSynonym", + "val" : "cell membrane", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "bacterial inner membrane", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "cytoplasmic membrane", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "plasma membrane lipid bilayer", + "xrefs" : [ "GOC:mah" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0005904" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "plasma membrane" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001048", "meta" : { @@ -36222,7 +40352,7 @@ } ] }, "type" : "CLASS", - "lbl" : "grand multi[arous" + "lbl" : "grand multiparous" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000195", "meta" : { @@ -38944,6 +43074,27 @@ }, "type" : "CLASS", "lbl" : "obsolete solid substance" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0071944", + "meta" : { + "definition" : { + "val" : "The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures.", + "xrefs" : [ "GOC:mah" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "midori" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-04T01:51:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "cell periphery" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001474", "meta" : { @@ -39062,6 +43213,20 @@ }, "type" : "CLASS", "lbl" : "normal distance" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051098", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.", + "xrefs" : [ "GOC:ai" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of binding" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045010", "meta" : { @@ -39083,6 +43248,41 @@ }, "type" : "CLASS", "lbl" : "normal concentration" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051099", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.", + "xrefs" : [ "GOC:ai" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "up regulation of binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of binding", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of binding", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of binding", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of binding" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045026", "meta" : { @@ -39166,6 +43366,26 @@ }, "type" : "CLASS", "lbl" : "normal male receptivity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0110165", + "meta" : { + "definition" : { + "val" : "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex.", + "xrefs" : [ "GOC:kmv" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2019-08-12T18:01:37Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "kmv" + } ] + }, + "type" : "CLASS", + "lbl" : "cellular anatomical entity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000158", "meta" : { @@ -40296,6 +44516,27 @@ }, "type" : "CLASS", "lbl" : "morbidity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002131", + "meta" : { + "definition" : { + "val" : "x overlaps y if and only if there exists some z such that x has part z and z part of y", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "overlaps" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001416", "meta" : { @@ -40835,6 +45076,23 @@ }, "type" : "CLASS", "lbl" : "obsolete relative length value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002598", + "meta" : { + "definition" : { + "val" : "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "renin -> arteriolar smooth muscle contraction" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "capable of positively regulating" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001420", "meta" : { @@ -40942,6 +45200,53 @@ }, "type" : "CLASS", "lbl" : "increased length" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0009987", + "meta" : { + "definition" : { + "val" : "Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.", + "xrefs" : [ "GOC:go_curators", "GOC:isa_complete" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "cellular physiological process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "cell growth and/or maintenance", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "cell physiology", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "single-organism cellular process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044763" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0050875" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "janelomax" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0008151" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-11T16:56:55Z" + } ] + }, + "type" : "CLASS", + "lbl" : "cellular process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045000", "meta" : { @@ -41080,6 +45385,26 @@ }, "type" : "CLASS", "lbl" : "obsolete micronutrient sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002595", + "meta" : { + "definition" : { + "val" : "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + } ] + }, + "type" : "PROPERTY", + "lbl" : "causal relation between material entity and a process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001436", "meta" : { @@ -41150,6 +45475,23 @@ }, "type" : "CLASS", "lbl" : "obsolete macronutrient sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002596", + "meta" : { + "definition" : { + "val" : "Holds between c and p if and only if c is capable of some activity a, and a regulates p.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "pyrethroid -> growth" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "capable of regulating" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000589", "meta" : { @@ -41248,6 +45590,20 @@ }, "type" : "CLASS", "lbl" : "obsolete osmotic response sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002597", + "meta" : { + "definition" : { + "val" : "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "capable of negatively regulating" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000107", "meta" : { @@ -41568,6 +45924,42 @@ }, "type" : "CLASS", "lbl" : "alkaline" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0030545", + "meta" : { + "definition" : { + "val" : "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed.", + "xrefs" : [ "GOC:ceb" ] + }, + "xrefs" : [ { + "val" : "MIPS_funcat:18.02.07" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + } ] + }, + "type" : "CLASS", + "lbl" : "receptor regulator activity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0030546", + "meta" : { + "definition" : { + "val" : "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased.", + "xrefs" : [ "GOC:ceb" ] + }, + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "receptor activator activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + } ] + }, + "type" : "CLASS", + "lbl" : "signaling receptor activator activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000114", "meta" : { @@ -41646,6 +46038,23 @@ }, "type" : "CLASS", "lbl" : "obsolete radiation sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002584", + "meta" : { + "definition" : { + "val" : "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has part structure that is capable of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000597", "meta" : { @@ -41805,6 +46214,16 @@ }, "type" : "CLASS", "lbl" : "size" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002581", + "meta" : { + "definition" : { + "val" : "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL", + "xrefs" : [ ] + } + }, + "type" : "PROPERTY", + "lbl" : "is a defining property chain axiom" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001448", "meta" : { @@ -41853,6 +46272,16 @@ }, "type" : "CLASS", "lbl" : "height" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002582", + "meta" : { + "definition" : { + "val" : "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.", + "xrefs" : [ ] + } + }, + "type" : "PROPERTY", + "lbl" : "is a defining property chain axiom where second argument is reflexive" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000590", "meta" : { @@ -42028,6 +46457,29 @@ }, "type" : "CLASS", "lbl" : "decreased volume" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002578", + "meta" : { + "definition" : { + "val" : "Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly regulates (processual)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly regulates" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000112", "meta" : { @@ -42111,6 +46563,120 @@ }, "type" : "CLASS", "lbl" : "heterophilic" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0009966", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of signal transduction.", + "xrefs" : [ "GOC:sm" ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "regulation of signaling pathway", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "regulation of signalling pathway", + "xrefs" : [ "GOC:mah" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0035466" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of signal transduction" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0009967", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of signal transduction.", + "xrefs" : [ "GOC:sm" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "up regulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "positive regulation of signalling pathway", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "positive regulation of signaling pathway", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0035468" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of signal transduction" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0009968", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction.", + "xrefs" : [ "GOC:sm" ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "negative regulation of signalling pathway", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "negative regulation of signaling pathway", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of signal transduction", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0035467" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of signal transduction" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000529", "meta" : { @@ -42436,6 +47002,26 @@ }, "type" : "CLASS", "lbl" : "scarred" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002566", + "meta" : { + "definition" : { + "val" : "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influences (material entity to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally influences" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000539", "meta" : { @@ -42513,6 +47099,22 @@ }, "type" : "CLASS", "lbl" : "obsolete macronutrient sensitivity value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002563", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "interaction relation helper property" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001862", "meta" : { @@ -42559,6 +47161,16 @@ }, "type" : "CLASS", "lbl" : "obsolete osmotic response sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002564", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecular interaction relation helper property" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001863", "meta" : { @@ -42700,6 +47312,22 @@ }, "type" : "CLASS", "lbl" : "obsolete acid sensitivity value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002559", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influenced by (material entity to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally influenced by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001860", "meta" : { @@ -43678,6 +48306,25 @@ "lbl" : "obsolete u v light sensitivity value" }, { "id" : "http://purl.obolibrary.org/obo/GO_0003824", + "meta" : { + "definition" : { + "val" : "Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.", + "xrefs" : [ "GOC:vw", "ISBN:0198506732" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant" ], + "xrefs" : [ { + "val" : "Wikipedia:Enzyme" + } ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "enzyme activity", + "xrefs" : [ "GOC:dph", "GOC:tb" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + } ] + }, "type" : "CLASS", "lbl" : "catalytic activity" }, { @@ -44080,10 +48727,38 @@ }, "type" : "CLASS", "lbl" : "obsolete symmetry value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0010562", + "meta" : { + "definition" : { + "val" : "Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of phosphorus metabolic process" }, { "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", "type" : "PROPERTY", "lbl" : "in_subset" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0010563", + "meta" : { + "definition" : { + "val" : "Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of phosphorus metabolic process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001828", "meta" : { @@ -44393,6 +49068,76 @@ }, "type" : "CLASS", "lbl" : "permeability" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0033674", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.", + "xrefs" : [ "GOC:mah" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "upregulation of kinase activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of kinase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of kinase activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "kinase activator", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of kinase activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of kinase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0033673", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.", + "xrefs" : [ "GOC:mah" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "downregulation of kinase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of kinase activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of kinase activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "kinase inhibitor", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of kinase activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of kinase activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000507", "meta" : { @@ -44889,6 +49634,39 @@ }, "type" : "CLASS", "lbl" : "arrhythmic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002506", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + } ] + }, + "type" : "PROPERTY", + "lbl" : "causal relation between material entities" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002500", + "meta" : { + "definition" : { + "val" : "A relationship between a material entity and a process where the material entity has some causal role that influences the process", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causal agent in process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000981", "meta" : { @@ -44902,6 +49680,26 @@ }, "type" : "CLASS", "lbl" : "obsolete relative porosity value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002501", + "meta" : { + "definition" : { + "val" : "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causal relation between processes" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000980", "meta" : { @@ -44915,6 +49713,19 @@ }, "type" : "CLASS", "lbl" : "obsolete absolute porosity value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002502", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/BFO_0000169" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "depends on" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000518", "meta" : { @@ -44984,6 +49795,35 @@ }, "type" : "CLASS", "lbl" : "obsolete humidity sensitivity value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0098590", + "meta" : { + "definition" : { + "val" : "A membrane that is a (regional) part of the plasma membrane.", + "xrefs" : [ "GOC:dos" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "region of plasma membrane", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-03-06T11:55:32Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term should not be used for direct manual annotation as it should always be possible to choose a more specific subclass." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : 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"lbl" : "process has causal agent" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000936", "meta" : { @@ -46563,14 +51807,115 @@ "lbl" : "decreased rate" }, { "id" : "http://purl.obolibrary.org/obo/GO_0042995", + "meta" : { + "definition" : { + "val" : "A prolongation or process extending from a cell, e.g. a flagellum or axon.", + "xrefs" : [ "GOC:jl", "http://www.cogsci.princeton.edu/~wn/" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "cellular projection", + "xrefs" : [ ] + }, { + "pred" : "hasBroadSynonym", + "val" : "cell process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, "type" : "CLASS", "lbl" : "cell projection" }, { "id" : "http://purl.obolibrary.org/obo/GO_0005929", + "meta" : { + "definition" : { + "val" : "A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body.", + "xrefs" : [ "GOC:cilia", "GOC:curators", "GOC:kmv", "GOC:vw", "ISBN:0198547684", "PMID:16824949", "PMID:17009929", "PMID:20144998" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_generic" ], + "xrefs" : [ { + "val" : "NIF_Subcellular:sao787716553" + }, { + "val" : "Wikipedia:Cilium" + }, { + "val" : "FMA:67181" + } ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "microtubule-based flagellum", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "primary cilium", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "eukaryotic flagellum", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "flagellum", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0072372" + } ] + }, "type" : "CLASS", "lbl" : "cilium" }, { "id" : "http://purl.obolibrary.org/obo/GO_0005575", + "meta" : { + "definition" : { + "val" : "A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome).", + "xrefs" : [ "GOC:pdt", "NIF_Subcellular:sao1337158144" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "xrefs" : [ { + "val" : "NIF_Subcellular:sao1337158144" + } ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "cell or subcellular entity", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "subcellular entity", + "xrefs" : [ "NIF_Subcellular:nlx_subcell_100315" ] + }, { + "pred" : "hasExactSynonym", + "val" : "cellular component", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0008372" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code \"no data\" (ND), is used to indicate this." + } ] + }, "type" : "CLASS", "lbl" : "cellular_component" }, { @@ -46749,12 +52094,33 @@ }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this day is part of this year (occurrent parthood)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000031" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000004" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000017" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000019" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." @@ -46764,12 +52130,21 @@ }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "part_of" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my brain is part of my body (continuant parthood, two material entities)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." @@ -46954,6 +52329,9 @@ }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my body has part my brain (continuant parthood, two material entities)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." @@ -47034,6 +52412,40 @@ } ] }, "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005102", + "meta" : { + "definition" : { + "val" : "Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.", + "xrefs" : [ "GOC:bf", "GOC:ceb", "ISBN:0198506732" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], + "xrefs" : [ { + "val" : "Wikipedia:Ligand_(biochemistry)" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "receptor ligand", + "xrefs" : [ ] + }, { + "pred" : "hasBroadSynonym", + "val" : "receptor binding", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "receptor-associated protein activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Where appropriate, also consider annotating to 'receptor agonist activity ; GO:0048018'." + } ] + }, + "type" : "CLASS", + "lbl" : "signaling receptor binding" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002274", "meta" : { @@ -47559,6 +52971,37 @@ }, "type" : "CLASS", "lbl" : "decreased elasticity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0030990", + "meta" : { + "definition" : { + "val" : "A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules.", + "xrefs" : [ "GOC:cilia", "GOC:kmv", "PMID:14570576", "PMID:22118932", "PMID:23945166" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "intraflagellar transport complex", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "intraflagellar transport particle", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "IFT complex", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that we deem cilia and microtubule-based flagella to be equivalent." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "intraciliary transport particle" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002281", "meta" : { @@ -47776,18 +53219,27 @@ "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", "xrefs" : [ ] }, + "xrefs" : [ { + "val" : "BFO:0000066" + } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "occurs_in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "occurs in" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "occurs_in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "unfolds_in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "unfolds in" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", "val" : "http://purl.obolibrary.org/obo/bfo.owl" @@ -47825,6 +53277,7 @@ "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "is preceded by" @@ -47904,6 +53357,7 @@ "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "precedes" @@ -47947,6 +53401,10 @@ }, "type" : "CLASS", "lbl" : "agenesis" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000019", + "type" : "CLASS", + "lbl" : "quality" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000015", "meta" : { @@ -49142,6 +54600,45 @@ }, "type" : "CLASS", "lbl" : "paleopolyploid" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005515", + "meta" : { + "definition" : { + "val" : "Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).", + "xrefs" : [ "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_candida" ], + "xrefs" : [ { + "val" : "MIPS_funcat:16.01" + }, { + "val" : "MIPS_funcat:18.01.07" + }, { + "val" : "Reactome:R-HSA-170846" + }, { + "val" : "Reactome:R-HSA-170835" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "glycoprotein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "protein amino acid binding", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0045308" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0001948" + } ] + }, + "type" : "CLASS", + "lbl" : "protein binding" }, { "id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym", "type" : "PROPERTY", @@ -49719,6 +55216,33 @@ }, "type" : "CLASS", "lbl" : "spatial pattern" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002180", + "meta" : { + "definition" : { + "val" : "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:Componency" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has component" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002258", "meta" : { @@ -50221,14 +55745,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001280", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000954" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000088", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001756", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001585" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0098772", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0003674" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002025", "pred" : "is_a", @@ -50237,10 +55761,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000338", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0042995", "pred" : "is_a", @@ -50261,22 +55781,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001651", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001178" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000458", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001968", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000325", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000182", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0019222", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0008152" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001043", "pred" : "is_a", @@ -50286,17 +55798,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000205", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0051100", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0005488" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001765", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000195", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000628", "pred" : "is_a", @@ -50309,10 +55817,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000384", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001894" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000075", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000404", "pred" : "is_a", @@ -50321,30 +55825,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045072", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000218", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000935", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000802", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000672", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000328", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000017" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010648", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048523" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002415", "pred" : "is_a", @@ -50353,22 +55845,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000383", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001894" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000815", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001166", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002462", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001033", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001910", "pred" : "is_a", @@ -50377,10 +55857,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001920", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000792", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002397", "pred" : "is_a", @@ -50393,10 +55869,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002487", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001059", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002629", "pred" : "is_a", @@ -50409,18 +55881,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000632", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000440" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0045936", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0006796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002252", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000922", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001179", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002115", "pred" : "is_a", @@ -50429,10 +55897,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000303", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001140", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002361", "pred" : "is_a", @@ -50445,38 +55909,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000578", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000445", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001629", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001729", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002178", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000565", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001729", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002318" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000312", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002485", "pred" : "is_a", @@ -50489,10 +55937,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002463", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000698", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001869", "pred" : "is_a", @@ -50505,10 +55949,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002103", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000685", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001774", "pred" : "is_a", @@ -50517,10 +55957,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002476", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000432", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001757", "pred" : "is_a", @@ -50538,13 +55974,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" }, { - "sub" : "http://www.w3.org/2002/07/owl#Nothing", + "sub" : "http://purl.obolibrary.org/obo/GO_0098590", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Nothing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001273", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0016020" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001496", "pred" : "is_a", @@ -50569,18 +56001,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001382", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000552", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000828", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000947", "pred" : "is_a", @@ -50605,14 +56029,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002339", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000454" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001642", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001515", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000019" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0016020", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0110165" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001735", "pred" : "is_a", @@ -50638,41 +56062,41 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001709" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000061", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000204", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0050794", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000194", + "sub" : "http://purl.obolibrary.org/obo/GO_0050794", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0050789" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0045937", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0006796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000074", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000217", + "sub" : "http://purl.obolibrary.org/obo/GO_1900120", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0043393" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000920", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0023057", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0023052" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0023056", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0023052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", "pred" : "is_a", @@ -50689,10 +56113,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002221", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0043229", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0044424" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043229", "pred" : "is_a", @@ -50701,30 +56121,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000050", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000165" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000087", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000814", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000551", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000599", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000921" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001045", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", "pred" : "is_a", @@ -50734,9 +56138,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001294" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000671", + "sub" : "http://purl.obolibrary.org/obo/GO_0010647", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0048522" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000415", "pred" : "is_a", @@ -50749,10 +56153,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045087", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045000" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000791", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045091", "pred" : "is_a", @@ -50765,10 +56165,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000327", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000016" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000934", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001394", "pred" : "is_a", @@ -50777,22 +56173,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001473", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000470" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000801", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001890", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001058", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000181", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001396", "pred" : "is_a", @@ -50802,9 +56186,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000457", + "sub" : "http://purl.obolibrary.org/obo/GO_0008152", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", "pred" : "is_a", @@ -50837,42 +56221,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002362", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002360" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000577", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002170", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001786" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000444", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002090", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000311", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000564", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000707", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001165", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001383", "pred" : "is_a", @@ -50881,10 +56241,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001480", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001032", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045077", "pred" : "is_a", @@ -50893,14 +56249,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002464", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000697", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000827", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001713", "pred" : "is_a", @@ -50910,17 +56258,21 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000684", + "sub" : "http://purl.obolibrary.org/obo/GO_0051100", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000431", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0044092" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001467", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051347", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043085" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0007165", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0051716" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002477", "pred" : "is_a", @@ -50954,17 +56306,21 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001590" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", + "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048585", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048519" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045070", "pred" : "is_a", @@ -51017,18 +56373,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001669", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000447", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000314", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000567", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000048", "pred" : "is_a", @@ -51037,10 +56381,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001677", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001029" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000291", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -51065,26 +56405,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002471", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001049", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004034", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004032" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000171", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001824", "pred" : "is_a", @@ -51093,10 +56425,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001895", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000047" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000184", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002021", "pred" : "is_a", @@ -51109,34 +56437,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002250", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002248" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0004872", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001966", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000207", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000197", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001966", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001986", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000064", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015008", "pred" : "is_a", @@ -51150,13 +56462,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000781", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0009967", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001155", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0009968", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001863", "pred" : "is_a", @@ -51170,21 +56482,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000924", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001048", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002332", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001431" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002470", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002332", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001431" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002081", "pred" : "is_a", @@ -51221,22 +56525,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002383", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002381" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000687", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000434", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002126", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000301", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002030", "pred" : "is_a", @@ -51250,41 +56542,25 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001555" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000554", + "sub" : "http://purl.obolibrary.org/obo/GO_0048519", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0050789" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000421", + "sub" : "http://purl.obolibrary.org/obo/GO_0051348", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0043086" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001927", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001290" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001142", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001393", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001374" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000674", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002247", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000804", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000541", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002177", "pred" : "is_a", @@ -51293,10 +56569,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001501", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000661", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001371", "pred" : "is_a", @@ -51305,22 +56577,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002068", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002067" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0044424", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0044464" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000817", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001633", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000794", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001472", "pred" : "is_a", @@ -51338,9 +56598,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000339", + "sub" : "http://purl.obolibrary.org/obo/GO_0033674", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0043549" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001620", "pred" : "is_a", @@ -51353,10 +56613,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001380", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002004", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045020", "pred" : "is_a", @@ -51381,18 +56637,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001652", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000089", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001679", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000918" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001631", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045010", "pred" : "is_a", @@ -51402,45 +56650,37 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000459", + "sub" : "http://purl.obolibrary.org/obo/GO_0030990", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0032991" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001967", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000326", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0005886", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0071944" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001728", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001727" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001625", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001559" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001678", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001029" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001281", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001625", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000951" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001559" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000579", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001281", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000951" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001334", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001708" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001644", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000068", "pred" : "is_a", @@ -51450,9 +56690,9 @@ "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002334" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000446", + "sub" : "http://purl.obolibrary.org/obo/GO_0098797", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0098796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001650", "pred" : "is_a", @@ -51461,10 +56701,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001673", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000170", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001801", "pred" : "is_a", @@ -51481,10 +56717,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000183", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001054", "pred" : "is_a", @@ -51509,10 +56741,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001991", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000206", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000051", "pred" : "is_a", @@ -51521,10 +56749,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002022", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000196", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000317", "pred" : "is_a", @@ -51533,18 +56757,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002472", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000063", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002130", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002129" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000076", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002251", "pred" : "is_a", @@ -51553,10 +56769,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002372", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002369" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000219", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001764", "pred" : "is_a", @@ -51566,29 +56778,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002005" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000660", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000923", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000793", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/RO_0002258", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002286" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002486", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000780", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000803", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002628", "pred" : "is_a", @@ -51605,22 +56801,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002246", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000910", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0003674", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/BFO_0000015" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001047", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000290", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001295", "pred" : "is_a", @@ -51633,18 +56817,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000566", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000313", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000709", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002317", "pred" : "is_a", @@ -51661,14 +56833,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000040" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000829", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000699", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002066", "pred" : "is_a", @@ -51681,10 +56845,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002384", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002381" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000686", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002475", "pred" : "is_a", @@ -51693,10 +56853,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000304", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000433", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002082", "pred" : "is_a", @@ -51710,9 +56866,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001274", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0048584", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0050896" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048585", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0050896" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001767", "pred" : "is_a", @@ -51722,9 +56882,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002067" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000816", + "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", "pred" : "is_a", @@ -51733,10 +56893,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001539", "pred" : "is_a", @@ -51749,10 +56905,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001164", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001019" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000553", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001031", "pred" : "is_a", @@ -51762,37 +56914,25 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000068" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000420", + "sub" : "http://purl.obolibrary.org/obo/GO_0044237", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0008152" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001773", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001141", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001643", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001178" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000673", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001643", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001402", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000540", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001542", "pred" : "is_a", @@ -51809,6 +56949,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000963", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000957" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002384", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002324" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045079", "pred" : "is_a", @@ -51874,9 +57018,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000470" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000810", + "sub" : "http://purl.obolibrary.org/obo/GO_0009967", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0010647" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0016740", "pred" : "is_a", @@ -51889,10 +57033,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001713", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001711" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000227", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001763", "pred" : "is_a", @@ -51905,22 +57045,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002180", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000084", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000107", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0055001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000097", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002362", "pred" : "is_a", @@ -51933,58 +57061,34 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000169", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000943", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045070", + "sub" : "http://purl.obolibrary.org/obo/GO_0043549", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000515" + "obj" : "http://purl.obolibrary.org/obo/GO_0042325" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000930", + "sub" : "http://purl.obolibrary.org/obo/PATO_0045070", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000515" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000128", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001035" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000837", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002427", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000717", + "sub" : "http://purl.obolibrary.org/obo/GO_0043393", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0051098" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015021", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000561", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001068", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000201", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000704", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001904", "pred" : "is_a", @@ -52001,26 +57105,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000998", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000992" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000681", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0025001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0025000" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000191", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002029", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000214", + "sub" : "http://purl.obolibrary.org/obo/GO_0048585", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0048583" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002338", "pred" : "is_a", @@ -52029,14 +57125,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002478", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001410" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000071", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000824", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000083", "pred" : "is_a", @@ -52053,10 +57141,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002187", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001042", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000337", "pred" : "is_a", @@ -52065,10 +57149,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002199", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002198" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000347", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002499", "pred" : "is_a", @@ -52085,6 +57165,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048583", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050789" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002042", "pred" : "is_a", @@ -52105,10 +57189,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000152" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000334", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002127", "pred" : "is_a", @@ -52125,18 +57205,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002367", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000384" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0023057", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048519" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001362", "pred" : "is_a", @@ -52153,14 +57237,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002500", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002595" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001175", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002015", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001786", "pred" : "is_a", @@ -52189,10 +57265,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001655", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001797", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000596", "pred" : "is_a", @@ -52237,46 +57309,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001726", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001721" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001557", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000106", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000096", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001788", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001823", + "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001822" + "obj" : "http://purl.obolibrary.org/obo/GO_0010648" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000942", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001823", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001822" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001894", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000047" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000239", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000822", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001937", "pred" : "is_a", @@ -52290,9 +57342,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001329" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001771", + "sub" : "http://purl.obolibrary.org/obo/GO_0023051", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0050789" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001965", "pred" : "is_a", @@ -52309,42 +57361,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002140", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002138" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000200", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002541", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002460", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001431" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000190", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000716", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000849", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000213", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000560", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002460", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000261", "pred" : "is_a", @@ -52353,34 +57381,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002482", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000703", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000823", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000336", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000693", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002382", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002381" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000836", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000680", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001162", "pred" : "is_a", @@ -52389,18 +57397,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002080", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001444" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000226", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002176", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002175" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000359", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002043", "pred" : "is_a", @@ -52413,6 +57413,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000323", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0019220", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0006796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002479", "pred" : "is_a", @@ -52429,58 +57433,38 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002233", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001174", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001041", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000587", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000479", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000346", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002506", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002410" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001067", + "sub" : "http://purl.obolibrary.org/obo/GO_0009893", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0048518" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002481", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002564" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000466", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002188", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000729", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045068", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002360" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000051", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002003", "pred" : "is_a", @@ -52489,6 +57473,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001340", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001894" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0023056", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048518" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0007165", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0023052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001253", "pred" : "is_a", @@ -52497,10 +57489,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0025000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001641", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001359", "pred" : "is_a", @@ -52525,18 +57513,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001410", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000349", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001597", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002158", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001623", "pred" : "is_a", @@ -52549,22 +57529,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001832", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000891" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000469", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001614", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000467", "pred" : "is_a", @@ -52573,14 +57549,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001723", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001720" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000193", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000073", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001517", "pred" : "is_a", @@ -52597,10 +57565,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001305", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000216", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002374", "pred" : "is_a", @@ -52609,26 +57573,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001747", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001744" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000932", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001499", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002398", + "sub" : "http://purl.obolibrary.org/obo/GO_0005488", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0003674" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000229", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001808", "pred" : "is_a", @@ -52638,13 +57594,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000086", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000109", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/RO_0002286", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002384" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001595", "pred" : "is_a", @@ -52653,30 +57605,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001592", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000099", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002528", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001522", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000008" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002420", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000683", + "sub" : "http://purl.obolibrary.org/obo/GO_0051347", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0051338" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000430", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002420", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002070" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001781", "pred" : "is_a", @@ -52685,10 +57625,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002350", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001057", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002122", "pred" : "is_a", @@ -52697,10 +57633,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002147", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000959", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001908", "pred" : "is_a", @@ -52709,42 +57641,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002295", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000550", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001803", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000927" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001177", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000826", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002428", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002263" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000933", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000800", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000670", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002497", "pred" : "is_a", @@ -52753,14 +57661,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002483", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000180", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000813", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001962", "pred" : "is_a", @@ -52769,10 +57669,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001902", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000203", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000454", "pred" : "is_a", @@ -52781,10 +57677,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001892", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000790", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000708", "pred" : "is_a", @@ -52793,10 +57685,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015027", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000589", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001930", "pred" : "is_a", @@ -52817,10 +57705,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000569", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000119" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001151", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000583", "pred" : "is_a", @@ -52830,17 +57714,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000456", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002185", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002183" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002365", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000383" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002185", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002183" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000646", "pred" : "is_a", @@ -52849,34 +57729,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001244", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001044", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000839", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000576", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000443", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000945", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000310", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000563", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001300", "pred" : "is_a", @@ -52901,14 +57757,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002269", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000696", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002159", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045031", "pred" : "is_a", @@ -52925,6 +57773,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001172", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001031" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0045937", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010562" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045080", "pred" : "is_a", @@ -52933,10 +57785,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001319", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000189" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001666", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", "pred" : "is_a", @@ -52949,14 +57797,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001615", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", "pred" : "is_a", @@ -52977,10 +57825,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001625", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001510" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000348", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000964", "pred" : "is_a", @@ -53001,18 +57845,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001506", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001505" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000931", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001559", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000072", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001490", "pred" : "is_a", @@ -53025,10 +57861,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0010005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002062" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000811", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002271", "pred" : "is_a", @@ -53053,18 +57885,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001859", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000769" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000228", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001858", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002076" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000108", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002025", "pred" : "subPropertyOf", @@ -53073,22 +57897,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001973", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000098", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001593", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002529", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009987", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001762", "pred" : "is_a", @@ -53097,6 +57917,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001888", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001548" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0050790", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0065009" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045009", "pred" : "is_a", @@ -53110,57 +57934,29 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001640", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000562", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000958", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001069", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0016301", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000705", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001903", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001963", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001903", + "sub" : "http://purl.obolibrary.org/obo/GO_0051348", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000825", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0051338" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002148", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000682", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000082", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000838", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001056", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005013", "pred" : "is_a", @@ -53169,18 +57965,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000616", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000812", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002337", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001877" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000202", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000453", "pred" : "is_a", @@ -53201,10 +57989,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000440", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000192", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", "pred" : "is_a", @@ -53214,17 +57998,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000215", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002124", + "sub" : "http://purl.obolibrary.org/obo/GO_0048584", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + "obj" : "http://purl.obolibrary.org/obo/GO_0048583" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000944", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002124", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002366", "pred" : "is_a", @@ -53249,26 +58033,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002026", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001243", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000468", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002026", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002228", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001150", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000719", "pred" : "is_a", @@ -53277,10 +58053,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002596", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000335", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001931", "pred" : "is_a", @@ -53297,10 +58069,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002050", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0001905" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001176", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002186", "pred" : "is_a", @@ -53325,18 +58093,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000625", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000575", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001324", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000442", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045006", "pred" : "is_a", @@ -53345,6 +58105,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002312", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0110165", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0005575" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000069", "pred" : "is_a", @@ -53353,22 +58117,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002151", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001785" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002201", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002016" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000284", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000031", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002201", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002326", "pred" : "is_a", @@ -53386,13 +58142,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001591" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000667", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000164", + "sub" : "http://purl.obolibrary.org/obo/GO_0005622", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0005575" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002139", "pred" : "is_a", @@ -53405,10 +58157,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001702", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001424" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000391", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001690", "pred" : "is_a", @@ -53417,34 +58165,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000057", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002323" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000534", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002467", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000787", + "sub" : "http://purl.obolibrary.org/obo/GO_0019220", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000401", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000177", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000654", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000521", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0051174" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", "pred" : "is_a", @@ -53457,14 +58185,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000297", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002218", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002206", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002218", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0016301", "pred" : "is_a", @@ -53474,21 +58202,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002370" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0030007", + "sub" : "http://purl.obolibrary.org/obo/GO_0009893", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0030003" + "obj" : "http://purl.obolibrary.org/obo/GO_0019222" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001136", + "sub" : "http://purl.obolibrary.org/obo/PATO_0030007", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0030003" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002157", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001852" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001003", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000927", "pred" : "is_a", @@ -53497,6 +58221,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045033", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001331" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0035556", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042327", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0045937" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000427", "pred" : "is_a", @@ -53517,18 +58249,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002014", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002335" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000307", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000271", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001389", "pred" : "is_a", @@ -53538,21 +58262,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001998" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001149", + "sub" : "http://purl.obolibrary.org/obo/GO_0031325", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0009893" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001375", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001393" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001016", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000151", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000613", "pred" : "is_a", @@ -53569,6 +58285,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002400", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001409" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042326", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002418", "pred" : "inverseOf", @@ -53593,18 +58313,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004047", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002418" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001002", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0005575", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002085", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002322", "pred" : "is_a", @@ -53617,46 +58325,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001341", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001342" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001122", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000773", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000189" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001462", + "sub" : "http://purl.obolibrary.org/obo/GO_0009892", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001464" + "obj" : "http://purl.obolibrary.org/obo/GO_0019222" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000641", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001462", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001464" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000894", + "sub" : "http://purl.obolibrary.org/obo/GO_0050789", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0065007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000948", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000904", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002509", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000774", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000917", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001342", "pred" : "is_a", @@ -53697,10 +58389,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002444", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000881", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001795", "pred" : "is_a", @@ -53713,10 +58401,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000163", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001880", "pred" : "is_a", @@ -53729,38 +58413,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001690" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000559", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001691", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001579" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000296", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002334", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002331" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000426", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000679", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000176", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040019", "pred" : "is_a", @@ -53777,10 +58441,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001897", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000666", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002335", "pred" : "is_a", @@ -53789,26 +58449,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005575" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000929", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000799", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002455", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000390", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002152", "pred" : "is_a", @@ -53817,22 +58465,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001841", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000049" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000786", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000533", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000400", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000809", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000150", "pred" : "is_a", @@ -53841,14 +58473,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000614", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000440" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001148", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001015", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001025", "pred" : "is_a", @@ -53857,6 +58481,10 @@ "sub" : "http://purl.obolibrary.org/obo/CL_0000000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/CARO_0000003" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042326", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0045936" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001872", "pred" : "is_a", @@ -53869,18 +58497,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002369", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002370" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001135", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001749", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000270", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002015", "pred" : "subPropertyOf", @@ -53893,6 +58513,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0016772", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0016740" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051099", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044093" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000631", "pred" : "is_a", @@ -53901,26 +58525,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000283", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000030", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000439", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002058", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000306", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001475", "pred" : "is_a", @@ -53929,10 +58537,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045041", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001121", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001378", "pred" : "is_a", @@ -53969,6 +58573,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001507", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051338", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0016740" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001463", "pred" : "is_a", @@ -53981,14 +58589,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001555", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0000070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001134", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001001", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001591", "pred" : "is_a", @@ -54001,10 +58601,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001936", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001891" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002086", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001546", "pred" : "is_a", @@ -54013,10 +58609,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001586", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000916", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", "pred" : "is_a", @@ -54025,10 +58617,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001343", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001337" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000653", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001952", "pred" : "is_a", @@ -54037,14 +58625,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001453", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001435" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001864", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000520", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001484", "pred" : "is_a", @@ -54053,6 +58633,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002473", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042327", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0042325" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002074", "pred" : "is_a", @@ -54065,18 +58649,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001907", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000880", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001796", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000893", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001946", "pred" : "is_a", @@ -54085,10 +58661,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000189", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000903", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001593", "pred" : "is_a", @@ -54097,18 +58669,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001704", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001424" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000393", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000789", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000536", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002465", "pred" : "is_a", @@ -54141,6 +58701,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002028", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002027" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0032091", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0005515" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000015", "pred" : "is_a", @@ -54154,41 +58718,21 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000153", + "sub" : "http://purl.obolibrary.org/obo/GO_0048523", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000656", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000523", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0050794" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000020", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000896", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002358", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000286", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001242", "pred" : "is_a", @@ -54201,10 +58745,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002419", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000906", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000647", "pred" : "is_a", @@ -54213,30 +58753,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001911", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002076" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000776", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002299", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000919", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000166", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045032", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000510", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0005929", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", + "obj" : "http://purl.obolibrary.org/obo/GO_0030990" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030005", "pred" : "is_a", @@ -54261,18 +58789,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045083", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001125", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001498", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002349", "pred" : "is_a", @@ -54281,14 +58801,6 @@ "sub" : "http://purl.obolibrary.org/obo/pato#has_divisor_quality", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/pato#has_ratio_quality" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000429", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001112", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002263", "pred" : "subPropertyOf", @@ -54309,34 +58821,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000411", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000947" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000549", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001138", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000394", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000049" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000669", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001882", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000260", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000416", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001251", "pred" : "is_a", @@ -54353,10 +58845,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002320", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002318" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001471", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0055001", "pred" : "is_a", @@ -54385,14 +58873,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002405", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002412" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001111", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001231", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001989", "pred" : "is_a", @@ -54413,10 +58893,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001481", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000167", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001018", "pred" : "is_a", @@ -54425,6 +58901,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002334", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042326", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0042325" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002071", "pred" : "is_a", @@ -54437,10 +58917,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001698", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000547" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000883", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015022", "pred" : "is_a", @@ -54449,10 +58925,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001440", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001531" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000750", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002376", "pred" : "is_a", @@ -54461,14 +58933,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001855", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002163", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001645" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001570", "pred" : "is_a", @@ -54482,9 +58954,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000990", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0042327", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002137", "pred" : "is_a", @@ -54501,10 +58973,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000870", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001798", "pred" : "is_a", @@ -54521,22 +58989,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001984", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", + "sub" : "http://purl.obolibrary.org/obo/GO_0048018", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" + "obj" : "http://purl.obolibrary.org/obo/GO_0005102" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0033673", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0016301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002355", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002353" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000668", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040004", "pred" : "is_a", @@ -54546,17 +59018,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002027" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000392", + "sub" : "http://purl.obolibrary.org/obo/PATO_0040014", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045009", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0040014", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002150", "pred" : "is_a", @@ -54565,30 +59033,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002017", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002016" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000285", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000535", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001613", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000788", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002466", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000032", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045027", "pred" : "is_a", @@ -54609,10 +59061,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000655", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015019", "pred" : "is_a", @@ -54621,14 +59069,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000428", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000298", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000522", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000014", "pred" : "is_a", @@ -54638,33 +59078,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000178", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000775", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001840", + "sub" : "http://purl.obolibrary.org/obo/GO_0010563", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0031324" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002181", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000045", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000464", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001998" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001004", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001883", "pred" : "is_a", @@ -54685,6 +59109,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0010003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0010002" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0030546", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0030545" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002359", "pred" : "is_a", @@ -54693,10 +59121,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002278", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001961" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001124", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000630", "pred" : "is_a", @@ -54709,10 +59133,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000043", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001017", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000592", "pred" : "is_a", @@ -54725,34 +59145,34 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002412", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002090" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002258", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002324" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001870", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000548", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001137", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0010563", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0006793" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000272", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0010562", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0006793" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001337", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001895" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002385", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002384" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002023", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002022" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001363", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001388", "pred" : "is_a", @@ -54785,6 +59205,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001374", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051348", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0016740" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051347", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0016740" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001434", "pred" : "is_a", @@ -54801,10 +59229,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001486", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001123", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001827", "pred" : "is_a", @@ -54821,10 +59245,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004031", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001110", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", @@ -54834,49 +59254,21 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000762", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000882", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000179", + "sub" : "http://purl.obolibrary.org/obo/GO_0010562", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0031325" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001441", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001531" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000046", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000895", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002441", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002440" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000059", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002084", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000759", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/PATO_0000763" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000905", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001291", "pred" : "is_a", @@ -54889,10 +59281,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002072", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0032092", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0005515" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002356", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002354" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048522", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048523", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002119", "pred" : "is_a", @@ -54909,10 +59313,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001030", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000449", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002045", "pred" : "is_a", @@ -54921,10 +59321,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001600", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000316", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002102", "pred" : "is_a", @@ -54933,30 +59329,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001995", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000209", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000199", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001022", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0033673", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043549" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002411", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000063" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000436", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000079", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001743", "pred" : "is_a", @@ -54997,10 +59381,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001819", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000608" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000556", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045067", "pred" : "is_a", @@ -55018,13 +59398,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000973" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001038", + "sub" : "http://purl.obolibrary.org/obo/GO_0005515", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0005488" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000280", + "sub" : "http://purl.obolibrary.org/obo/GO_0043085", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0050790" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001178", "pred" : "is_a", @@ -55037,18 +59417,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002211", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000293", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000160", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001158", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001924", "pred" : "is_a", @@ -55065,14 +59433,18 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002087", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002090" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043393", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0005515" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000410", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000173", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0043549", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0016301" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002233", "pred" : "subPropertyOf", @@ -55081,10 +59453,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001167", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001020" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000053", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045055", "pred" : "is_a", @@ -55101,26 +59469,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001159", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001144", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001011", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000900", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000688", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000913", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002375", "pred" : "is_a", @@ -55130,9 +59482,9 @@ "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002022" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001131", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/RO_0002387", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002384" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001397", "pred" : "is_a", @@ -55145,10 +59497,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045080", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002146" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001157", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045060", "pred" : "is_a", @@ -55177,38 +59525,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001364", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001598" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000939", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000676", + "sub" : "http://purl.obolibrary.org/obo/GO_0005886", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0016020" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000947" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000543", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000806", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000663", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002256", "pred" : "is_a", @@ -55222,13 +59554,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000819", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000796", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0033674", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0016301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002147", "pred" : "is_a", @@ -55241,46 +59569,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001590", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000530", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000783", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002363", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000952" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001647", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002038", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002037" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", + "sub" : "http://purl.obolibrary.org/obo/GO_0033674", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001035" + "obj" : "http://purl.obolibrary.org/obo/GO_0042327" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0044464", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0005575" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001035" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001637", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000926", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000650", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002285", "pred" : "is_a", @@ -55294,17 +59602,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045029", + "sub" : "http://purl.obolibrary.org/obo/GO_0048584", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + "obj" : "http://purl.obolibrary.org/obo/GO_0048518" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000208", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000198", + "sub" : "http://purl.obolibrary.org/obo/PATO_0045029", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001021", "pred" : "is_a", @@ -55313,10 +59617,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001624", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000065", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002148", "pred" : "is_a", @@ -55337,18 +59637,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002308", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000448", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000315", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000568", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001886", "pred" : "is_a", @@ -55362,9 +59650,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0030000" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000435", + "sub" : "http://purl.obolibrary.org/obo/GO_0065009", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0065007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000185", "pred" : "is_a", @@ -55385,14 +59673,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001997", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000302", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002348", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043086", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050790" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000078", "pred" : "is_a", @@ -55405,34 +59693,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000319", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000292", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002117", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000172", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001037", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/RO_0002254", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002258" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000274", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001434" - }, { - "sub" : "http://purl.obolibrary.org/obo/PCO_0000003", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015025", "pred" : "is_a", @@ -55450,61 +59726,57 @@ "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002017" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001408", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" + "sub" : "http://purl.obolibrary.org/obo/GO_0007165", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0007154" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045021", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001408", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002608", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002410" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001143", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/RO_0002388", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002387" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000273", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001434" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001010", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/RO_0002255", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002385" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045030", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000125" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001386", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001385" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001335", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001895" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001169", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001386", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001385" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002333", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001036", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001608", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001156", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0009966", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001472", "pred" : "is_a", @@ -55514,13 +59786,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000047" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000818", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000555", + "sub" : "http://purl.obolibrary.org/obo/GO_0048518", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0050789" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002221", "pred" : "is_a", @@ -55529,10 +59797,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002472", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002242" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001766", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002133", "pred" : "is_a", @@ -55549,42 +59813,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000665", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000016" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000675", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000303", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000542", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001513", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002095", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002246", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001035" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000662", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001415", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002003" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000925", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001697", "pred" : "is_a", @@ -55593,14 +59833,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002286", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000795", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001130", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002354", "pred" : "is_a", @@ -55609,14 +59841,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000782", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000805", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002105", "pred" : "is_a", @@ -55633,34 +59857,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001983", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000175", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000305", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001736", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001546" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000042", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000055", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000558", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000425", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045006", "pred" : "is_a", @@ -55677,22 +59877,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001815" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000678", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002088", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001673" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000545", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000808", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002136", "pred" : "is_a", @@ -55705,10 +59893,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001320", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000454" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000412", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045039", "pred" : "is_a", @@ -55717,10 +59901,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001024", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000798", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000309", "pred" : "is_a", @@ -55729,10 +59909,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000516" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001027", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001360", "pred" : "is_a", @@ -55758,13 +59934,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000951" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001147", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001014", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0098590", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0005886" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000040", "pred" : "is_a", @@ -55777,10 +59949,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002013", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002017" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000282", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002331", "pred" : "subPropertyOf", @@ -55798,17 +59966,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000998" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000162", + "sub" : "http://purl.obolibrary.org/obo/GO_0006793", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0044237" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001289", + "sub" : "http://purl.obolibrary.org/obo/GO_0032092", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001287" + "obj" : "http://purl.obolibrary.org/obo/GO_0051099" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000295", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001289", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001287" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001922", "pred" : "is_a", @@ -55817,18 +59985,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001000", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001929", "pred" : "http://purl.obolibrary.org/obo/pato#towards", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001120", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000642", "pred" : "is_a", @@ -55841,42 +60001,34 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002222" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001146", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001013", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002629", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002213" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042325", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001395", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001394" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043085", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0003824" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043086", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0003824" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001996", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000643", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001598" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001133", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001610", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002138", "pred" : "is_a", @@ -55885,14 +60037,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002050", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000785", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000532", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045013", "pred" : "is_a", @@ -55921,30 +60065,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001873", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002132", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000946", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002132", + "sub" : "http://purl.obolibrary.org/obo/GO_0051100", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" + "obj" : "http://purl.obolibrary.org/obo/GO_0051098" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001384", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000928", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002559", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002566" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000652", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002452", "pred" : "is_a", @@ -55965,18 +60105,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002449", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001633" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001240", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001714", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000573" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000902", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002044", "pred" : "is_a", @@ -56013,10 +60145,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001851", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000054", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045019", "pred" : "is_a", @@ -56025,18 +60153,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001853", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001450" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000187", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000152" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000437", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001851", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -56053,22 +60173,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001914", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001912" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000557", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000308", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000424", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000067", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001829", "pred" : "is_a", @@ -56077,26 +60185,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001817", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001815" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000677", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001980", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000544", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000299", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + "sub" : "http://purl.obolibrary.org/obo/GO_0098796", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0016020" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001923", "pred" : "is_a", @@ -56106,13 +60206,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001279", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002212", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005102", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0005515" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", "pred" : "is_a", @@ -56121,10 +60225,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0043227", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043226" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000281", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001206", "pred" : "is_a", @@ -56157,10 +60257,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001288", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001287" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000294", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001201", "pred" : "is_a", @@ -56170,25 +60266,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001039", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000174", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000041", + "sub" : "http://purl.obolibrary.org/obo/GO_1900121", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0032091" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001168", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001020" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001132", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000423", "pred" : "is_a", @@ -56197,10 +60281,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002450", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000048" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000901", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002395", "pred" : "is_a", @@ -56225,18 +60305,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001493", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001492" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001145", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001385", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001374" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001012", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001505", "pred" : "is_a", @@ -56245,18 +60317,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002409", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000664", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001580", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001690" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000797", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002414", "pred" : "is_a", @@ -56265,14 +60329,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001715", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000574" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000531", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000784", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002164", "pred" : "is_a", @@ -56297,14 +60353,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002019", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002233" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000807", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000914", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002291", "pred" : "is_a", @@ -56313,6 +60361,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000770", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000188" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0033673", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0042326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001571", "pred" : "is_a", @@ -56325,30 +60377,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002172", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001786" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002299", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002078" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002279", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002278" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002306", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002299", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002078" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002101", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002262", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002306", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001238", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002262", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000037", "pred" : "is_a", @@ -56357,38 +60405,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000387", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000048" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001095", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000996", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000743", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000500", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000863", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/RO_0002202", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002203" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000513", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000085" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000876", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001105", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000585", "pred" : "is_a", @@ -56397,10 +60425,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002162", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001082", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000969", "pred" : "is_a", @@ -56417,38 +60441,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002055", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000850", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000240", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000066", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000067" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000730", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000120", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001118", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000253", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000769", "pred" : "is_a", @@ -56457,22 +60457,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002305", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000649", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001452", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000373", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002282", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044237", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001696", "pred" : "is_a", @@ -56493,22 +60485,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000493", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001349", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001348" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001225", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000360", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000062", "pred" : "inverseOf", @@ -56529,6 +60509,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002597", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002596" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1900122", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0032092" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001809", "pred" : "is_a", @@ -56541,14 +60525,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002223", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001212", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000889", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001688", "pred" : "is_a", @@ -56557,14 +60533,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002097", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000756", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000480", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002584", "pred" : "subPropertyOf", @@ -56573,6 +60541,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001362" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0031323", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050794" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001956", "pred" : "http://purl.obolibrary.org/obo/pato#towards", @@ -56593,10 +60565,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001933", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000027", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001314", "pred" : "is_a", @@ -56621,14 +60589,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001552", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001457" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045073", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045051", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001323" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045073", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001739", "pred" : "is_a", @@ -56641,10 +60609,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045074", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001227" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002255", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002286" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010648", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010646" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001899", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001713" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1900121", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0005102" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001664", "pred" : "is_a", @@ -56653,22 +60633,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002566", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002506" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001451", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001917", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001632" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000121", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002531", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045063", "pred" : "is_a", @@ -56681,10 +60649,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002584", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000254", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001950", "pred" : "is_a", @@ -56693,10 +60657,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000134", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045058", "pred" : "is_a", @@ -56710,9 +60670,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000001", + "sub" : "http://purl.obolibrary.org/obo/GO_0016310", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0006796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", "pred" : "is_a", @@ -56721,6 +60681,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001750", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001749" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044093", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0003674" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001046", "pred" : "is_a", @@ -56729,10 +60693,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000635", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000267", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015028", "pred" : "is_a", @@ -56757,22 +60717,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002282", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000147", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015002" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009893", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0008152" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000040" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000875", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002327", "pred" : "inverseOf", @@ -56785,22 +60741,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045028", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000891" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001117", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000755", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000584", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000595" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001237", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045059", "pred" : "is_a", @@ -56817,14 +60761,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000634", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001094", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000742", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002370", "pred" : "is_a", @@ -56841,30 +60777,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045038", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000252", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000048" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000995", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002023", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002630" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000862", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000132", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0030000", "pred" : "is_a", @@ -56881,10 +60801,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001211", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002385", "pred" : "is_a", @@ -56893,18 +60809,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002343", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000631" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000385", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045087", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000044" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000528", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002392", "pred" : "is_a", @@ -56929,10 +60837,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001595" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000372", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001459", "pred" : "is_a", @@ -56941,22 +60845,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045086", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000768", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001104", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001689", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001687" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001081", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002098", "pred" : "is_a", @@ -56969,10 +60861,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001588", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000492", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002297", "pred" : "is_a", @@ -56989,10 +60877,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002272", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001224", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001918", "pred" : "is_a", @@ -57001,14 +60885,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001315", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001333", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002324" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001653", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001652" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001333", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002324" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001312", "pred" : "is_a", @@ -57029,14 +60913,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001028", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010647", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010646" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002333", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000399", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040013", "pred" : "is_a", @@ -57085,10 +60969,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001356", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000529", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001256", "pred" : "is_a", @@ -57117,10 +60997,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000000", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", @@ -57133,14 +61009,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001695", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000266", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000013", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001987", "pred" : "is_a", @@ -57157,14 +61025,6 @@ "sub" : "http://purl.obolibrary.org/obo/CARO_0000000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/CARO_0030000" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001820", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002532", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001751", "pred" : "is_a", @@ -57185,18 +61045,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000159", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000026", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000852", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002239", "pred" : "is_a", @@ -57205,34 +61053,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002303", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002373", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002110", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000732", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001214", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002373", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004033", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002264" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001071", + "sub" : "http://purl.obolibrary.org/obo/GO_0009966", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0048583" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002300", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000069" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009892", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0008152" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000146", "pred" : "is_a", @@ -57245,18 +61089,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002051", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001097", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001107", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000972", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002421", "pred" : "is_a", @@ -57265,10 +61097,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002378", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001979" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001084", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002425", "pred" : "is_a", @@ -57277,14 +61105,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000582", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000128" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001837", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000495", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0000056", "pred" : "inverseOf", @@ -57293,10 +61113,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002331", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002217" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000362", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001488", "pred" : "is_a", @@ -57313,10 +61129,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002333", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000482", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000570", "pred" : "is_a", @@ -57329,14 +61141,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045054", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000122" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000745", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000865", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045002", "pred" : "is_a", @@ -57349,10 +61153,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001348", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001335" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000878", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001456", "pred" : "is_a", @@ -57369,14 +61169,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001849", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000612", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001444", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001442" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0098796", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0032991" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002294", "pred" : "is_a", @@ -57398,21 +61198,21 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001206" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000269", + "sub" : "http://purl.obolibrary.org/obo/PATO_0040023", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0000052", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000053" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001553", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001551" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001311", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001310" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001553", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001551" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045043", "pred" : "is_a", @@ -57425,10 +61225,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001979", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000149", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002212", "pred" : "subPropertyOf", @@ -57441,38 +61237,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002065", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PCO_0000001", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001727", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000376", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000519", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002304", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004047" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001560", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000077", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000029", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001563", "pred" : "is_a", @@ -57482,29 +61258,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000322" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", + "sub" : "http://purl.obolibrary.org/obo/GO_0043085", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001566" + "obj" : "http://purl.obolibrary.org/obo/GO_0044093" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000496", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000363", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000506", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001566" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045048", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000110", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045056", "pred" : "is_a", @@ -57514,9 +61278,9 @@ "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002428" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000243", + "sub" : "http://purl.obolibrary.org/obo/GO_0031325", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0031323" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001461", "pred" : "is_a", @@ -57537,10 +61301,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002346", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000123", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015018", "pred" : "is_a", @@ -57553,14 +61313,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000039", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000256", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001835", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0032091", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051100" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002412", "pred" : "is_a", @@ -57577,10 +61337,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045035", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000003", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000629", "pred" : "is_a", @@ -57589,6 +61345,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002301", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000069" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044092", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0003674" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", "pred" : "is_a", @@ -57597,18 +61357,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002413", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001106", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000611", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000333", "pred" : "is_a", @@ -57617,38 +61369,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002304", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001479", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001083", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000997", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000501", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001226", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000864", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002227", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000731", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001865", "pred" : "is_a", @@ -57662,53 +61390,29 @@ "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002264" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000971", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001119", + "sub" : "http://purl.obolibrary.org/obo/GO_0031324", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0031323" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002304", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000757", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000185" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000851", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001239", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000241", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002111", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001096", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002230", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000517", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002096", "pred" : "is_a", @@ -57737,34 +61441,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002303", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1900120", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0005102" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000888" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000494", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000637", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000361", + "sub" : "http://purl.obolibrary.org/obo/GO_0043086", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0044092" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000877", + "sub" : "http://purl.obolibrary.org/obo/GO_0033674", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0051347" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001213", + "sub" : "http://purl.obolibrary.org/obo/GO_0010563", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001070", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0051174" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000639", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -57777,10 +61473,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045040", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000481", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002058", "pred" : "is_a", @@ -57793,10 +61485,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001442", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002079", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040010", "pred" : "is_a", @@ -57805,10 +61493,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002315", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000744", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", "pred" : "is_a", @@ -57826,13 +61510,21 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001310" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000148", + "sub" : "http://purl.obolibrary.org/obo/GO_0042325", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0019220" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0071944", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0110165" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0010001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051098", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0065009" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002305", "pred" : "subPropertyOf", @@ -57849,10 +61541,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001700", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000062" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000388", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001313", "pred" : "is_a", @@ -57861,10 +61549,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002329", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000028", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002296", "pred" : "is_a", @@ -57873,18 +61557,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045010", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001692", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001708", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000117" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002160", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002213", "pred" : "subPropertyOf", @@ -57929,10 +61605,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001332", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000518", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001559", "pred" : "is_a", @@ -57942,17 +61614,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001712" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001572", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0098797", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0005886" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001845", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000242", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001663", "pred" : "is_a", @@ -57973,10 +61641,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000375", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000040" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002530", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001193", "pred" : "is_a", @@ -57993,38 +61657,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001258", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000954" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000255", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0043226", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0005575" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002352", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001729" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000135", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000002", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000268", + "sub" : "http://purl.obolibrary.org/obo/GO_0043226", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0110165" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", "pred" : "is_a", @@ -58041,10 +61689,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001879", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000898", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000405", "pred" : "is_a", @@ -58054,29 +61698,29 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002201" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002325", + "sub" : "http://purl.obolibrary.org/obo/GO_0065007", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002323" + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000908", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002325", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002323" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000165" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000778", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001875", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001861", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002013" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001875", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" + "sub" : "http://purl.obolibrary.org/obo/GO_0010646", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0007154" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000152", "pred" : "is_a", @@ -58085,34 +61729,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002290", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001007", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000262", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000512", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000765", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000142", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000595", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000275", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005009", "pred" : "is_a", @@ -58141,42 +61761,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002274", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001533" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000885", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000155", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001832", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000752", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000022", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002041", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002316", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002129", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001091", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002316", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002436", "pred" : "is_a", @@ -58205,14 +61805,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001478", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001101", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000418", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001598", "pred" : "is_a", @@ -58221,18 +61813,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002458", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000538", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001127", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001428", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001842" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010562", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051174" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001604", "pred" : "is_a", @@ -58241,30 +61829,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004035", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002263" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000658", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000382", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001617", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000525", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000140", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001114", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001345", "pred" : "is_a", @@ -58301,18 +61873,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001366", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001616", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001100", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002335", "pred" : "subPropertyOf", @@ -58333,10 +61897,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001476", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001220", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001409", "pred" : "is_a", @@ -58353,18 +61913,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001583", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000156", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001726", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000023", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001681", "pred" : "is_a", @@ -58373,18 +61925,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000279", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000274" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000872", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000289", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000036", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001584", "pred" : "is_a", @@ -58441,6 +61981,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000133", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000001", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002484", "pred" : "is_a", @@ -58458,25 +62002,21 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000657", + "sub" : "http://purl.obolibrary.org/obo/GO_0048522", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000021", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" + "obj" : "http://purl.obolibrary.org/obo/GO_0050794" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002052", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001876", + "sub" : "http://purl.obolibrary.org/obo/PATO_0000021", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000524", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001876", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000016", "pred" : "is_a", @@ -58485,10 +62025,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001813", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001139", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001833", "pred" : "is_a", @@ -58501,10 +62037,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000777", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000276", "pred" : "is_a", @@ -58521,42 +62053,26 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0044464", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/CARO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000511", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002416", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001687" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000154", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000884", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000897", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0048519", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000287", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0048518", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000034", + "sub" : "http://purl.obolibrary.org/obo/GO_0043549", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0051338" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002040", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001355" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000907", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000395", "pred" : "is_a", @@ -58569,30 +62085,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002446", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0006796", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0006793" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001598" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001113", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002313", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002424", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002313", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000622", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001090", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000165", "pred" : "is_a", @@ -58601,10 +62113,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002437", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001006", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002076", "pred" : "is_a", @@ -58617,10 +62125,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002049", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001787" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000417", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001346", "pred" : "is_a", @@ -58657,18 +62161,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001227", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000537", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000389", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001126", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002257", "pred" : "is_a", @@ -58725,6 +62221,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001836", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0019222", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050789" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001361", "pred" : "is_a", @@ -58753,10 +62253,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001951", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001232", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001278", "pred" : "is_a", @@ -58765,10 +62261,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000938", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002264" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001508", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002336", "pred" : "subPropertyOf", @@ -58785,22 +62277,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001562", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000125" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000871", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000288", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001671", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001566" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000035", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001353", "pred" : "is_a", @@ -58813,14 +62293,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015021" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000751", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000168", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002217", "pred" : "inverseOf", @@ -58837,18 +62309,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002217", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000056" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002345", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001814", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001722", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002345", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045034", "pred" : "is_a", @@ -58882,13 +62350,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000991", + "sub" : "http://purl.obolibrary.org/obo/PATO_0040026", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002310", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051716", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050896" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001890", "pred" : "is_a", @@ -58901,22 +62373,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000633", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001129", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/CHEBI_46662", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001843", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000491", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001723", "pred" : "is_a", @@ -58929,10 +62389,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000621", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000638", "pred" : "is_a", @@ -58949,30 +62405,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001580", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000887", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001603", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001116", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001956", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000754", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000251", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002277", "pred" : "is_a", @@ -58985,14 +62425,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001873", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000994", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000741", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002448", "pred" : "is_a", @@ -59006,29 +62438,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001791" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000131", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000861", + "sub" : "http://purl.obolibrary.org/obo/GO_0042995", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0110165" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001830", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001009", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000874", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000264", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002135", "pred" : "is_a", @@ -59049,10 +62465,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002456", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000397", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000499", "pred" : "is_a", @@ -59065,10 +62477,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001223", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002427", "pred" : "subPropertyOf", @@ -59085,10 +62493,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002336", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001210", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002039", "pred" : "is_a", @@ -59101,22 +62505,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002447", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002436" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000527", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001489", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001093", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002077", "pred" : "is_a", @@ -59137,10 +62529,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000620", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0030001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000371", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001509", "pred" : "is_a", @@ -59149,30 +62537,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001330", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000043" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000767", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001311", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000499" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000514", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001379", + "sub" : "http://purl.obolibrary.org/obo/GO_0048018", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" + "obj" : "http://purl.obolibrary.org/obo/GO_0030546" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001103", + "sub" : "http://purl.obolibrary.org/obo/GO_0051099", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0051098" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001080", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001379", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001851", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -59197,14 +62577,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001582", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0050790", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0003824" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001547", "pred" : "is_a", @@ -59213,10 +62593,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001255", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000953" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000398", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002360", "pred" : "is_a", @@ -59237,18 +62613,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001846", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000408", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000012", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000265", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015014", "pred" : "is_a", @@ -59281,10 +62645,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001268", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000952" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000145", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043231", "pred" : "is_a", @@ -59302,17 +62662,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002012" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002061", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000278", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000981", + "sub" : "http://purl.obolibrary.org/obo/PATO_0040022", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", @@ -59325,10 +62677,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000158", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045050", "pred" : "is_a", @@ -59342,9 +62690,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001779" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000038", + "sub" : "http://purl.obolibrary.org/obo/GO_0023052", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001581", "pred" : "is_a", @@ -59361,10 +62709,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002218", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001008", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002431", "pred" : "is_a", @@ -59373,10 +62717,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001844", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000766", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002273", "pred" : "is_a", @@ -59385,34 +62725,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001470", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002000", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001999" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000886", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002000", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001999" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002422", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000490", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000250", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000899", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002213", "pred" : "inverseOf", @@ -59421,70 +62745,42 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002203", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002201" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001128", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0120025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0042995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000909", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002314", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000130", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002212", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002335" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000873", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043231", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043229" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002292", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002182", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000010", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000263", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002292", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001831", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000753", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0050789", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002211", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000143", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002311", "pred" : "is_a", @@ -59501,34 +62797,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000624", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002435", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000740", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000419", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002435", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002389", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000631" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001102", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000570", "pred" : "is_a", @@ -59553,34 +62837,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002154", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001785" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000539", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005010", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001222", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001477", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000659", + "sub" : "http://purl.obolibrary.org/obo/GO_0031324", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001115", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000526", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0009892" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002099", "pred" : "is_a", @@ -59597,22 +62865,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001536", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001092", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001235", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001427", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001842" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000779", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0010648", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0007154" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010647", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0007154" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015017", "pred" : "is_a", @@ -59669,14 +62933,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000970", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001221", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0010003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051716", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000892", "pred" : "is_a", @@ -59697,10 +62961,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001267", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000952" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000144", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000921", "pred" : "is_a", @@ -59722,9 +62982,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/CARO_0000000" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000980", + "sub" : "http://purl.obolibrary.org/obo/GO_0031323", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0019222" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001780", "pred" : "is_a", @@ -59733,14 +62993,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001802", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000993", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000157", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001817", "pred" : "is_a", @@ -59749,18 +63001,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001475", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000860", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001715", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000024", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001350", "pred" : "is_a", @@ -59805,14 +63049,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002212" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001430", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001428" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002212" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002324", "pred" : "is_a", @@ -59821,6 +63065,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002253", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000407" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1900121", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_1900120" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045065", "pred" : "is_a", @@ -59841,14 +63089,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045077", "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045084", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045071", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045084", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001699", "pred" : "is_a", @@ -59861,6 +63109,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000461", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000068" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0045936", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010563" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", "pred" : "is_a", @@ -59869,10 +63121,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001412", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001184", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001555", "pred" : "is_a", @@ -59905,10 +63153,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002436", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002434" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000129", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002280", "pred" : "is_a", @@ -59929,6 +63173,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002251", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0065009", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0003674" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0032991", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0005575" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001189", "pred" : "is_a", @@ -59941,34 +63193,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002481", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000978", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001636", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001634" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000845", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001661", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002412", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000712", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000009", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001528", "pred" : "is_a", @@ -60001,10 +63233,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001790", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001164" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000832", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001866", "pred" : "is_a", @@ -60017,6 +63245,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001416", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0035556", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000066", + "obj" : "http://purl.obolibrary.org/obo/GO_0005622" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001944", "pred" : "is_a", @@ -60025,22 +63257,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002494", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000223", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000476", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001615" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000343", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001663", "pred" : "is_a", @@ -60073,22 +63293,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045068", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000103", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000606", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001783", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000739", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002411", "pred" : "subPropertyOf", @@ -60102,9 +63310,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000236", + "sub" : "http://purl.obolibrary.org/obo/GO_0007165", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0050794" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002229", "pred" : "is_a", @@ -60121,26 +63329,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001650", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000726", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000979", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000093", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000846", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000116", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002074", "pred" : "is_a", @@ -60157,22 +63345,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001734", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001729" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000450", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000859", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000249", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002539", "pred" : "is_a", @@ -60201,18 +63377,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001263", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001197", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002195", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001064", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000983", "pred" : "is_a", @@ -60233,18 +63401,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002032", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001294" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001207", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000117" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000369", + "sub" : "http://purl.obolibrary.org/obo/GO_1900122", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_1900120" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001567", "pred" : "is_a", @@ -60257,34 +63421,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000210", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000489", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000356", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000502" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001077", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001276", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000321" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001170", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000460", "pred" : "is_a", @@ -60297,22 +63441,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045078", "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0031323", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0044237" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001787", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001591" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001063", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000982", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000970" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001183", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000955", "pred" : "is_a", @@ -60325,10 +63465,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000592", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000915" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001050", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002449", "pred" : "subPropertyOf", @@ -60346,17 +63482,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001326", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000581", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000977", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001746", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001744" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001758", "pred" : "is_a", @@ -60365,30 +63493,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001748", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001746", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001744" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000724", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001660", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000844", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002632", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000068" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000857", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002141", "pred" : "is_a", @@ -60413,10 +63521,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001818", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000831", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001417", "pred" : "is_a", @@ -60425,10 +63529,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001807", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000711", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001664", "pred" : "is_a", @@ -60469,14 +63569,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001533", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000019" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000102", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000355", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001651", "pred" : "is_a", @@ -60489,6 +63581,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051099", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0005488" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001420", "pred" : "is_a", @@ -60501,10 +63597,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002344", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000454" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000235", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045051", "pred" : "is_a", @@ -60513,38 +63605,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015022", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000475", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001927", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000342", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000092", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000115", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002496", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000605", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000858", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001901", "pred" : "is_a", @@ -60553,18 +63621,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001711" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000248", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002184", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002183" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000738", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001711", "pred" : "is_a", @@ -60577,22 +63637,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045030", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002202", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002258" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002518", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000725", + "sub" : "http://purl.obolibrary.org/obo/GO_0030545", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002196", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" + "obj" : "http://purl.obolibrary.org/obo/GO_0098772" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0050001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002196", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002019", "pred" : "is_a", @@ -60601,10 +63665,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002059", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001219", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045088", "pred" : "is_a", @@ -60617,6 +63677,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002197", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051174", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0031323" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002093", "pred" : "is_a", @@ -60625,10 +63689,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002033", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001294" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001076", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000617", "pred" : "is_a", @@ -60641,6 +63701,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001262", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000322" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0031324", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048523" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002388", "pred" : "is_a", @@ -60653,34 +63717,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000344", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000021" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0048018", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000701", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000368", + "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", + "sub" : "http://purl.obolibrary.org/obo/GO_1902531", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" + "obj" : "http://purl.obolibrary.org/obo/GO_0009966" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000122" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001275", "pred" : "is_a", @@ -60689,14 +63749,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001089", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000222", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002268", "pred" : "is_a", @@ -60705,6 +63757,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000125", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1902531", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0035556" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000595", "pred" : "is_a", @@ -60725,6 +63781,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002382", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1902532", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_1902531" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040009", "pred" : "is_a", @@ -60734,9 +63794,13 @@ "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002501" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001160", + "sub" : "http://purl.obolibrary.org/obo/GO_0032091", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0043393" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005634", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044464" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001482", "pred" : "is_a", @@ -60745,10 +63809,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002284", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001556", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001689", "pred" : "is_a", @@ -60766,9 +63826,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001569", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0048018", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002433", "pred" : "is_a", @@ -60777,18 +63837,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002502", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000821", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000118", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000691", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001755", "pred" : "is_a", @@ -60805,10 +63853,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001717", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000834", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001674", "pred" : "is_a", @@ -60901,6 +63945,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002214", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001979" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010646", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050794" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", "pred" : "is_a", @@ -60913,14 +63961,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001606", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002012" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001939", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000332", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002106", "pred" : "is_a", @@ -60933,10 +63973,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002078", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000728", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002403", "pred" : "is_a", @@ -60945,22 +63981,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045061", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000212", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001954", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001199" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000848", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000452", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001856", "pred" : "is_a", @@ -60977,10 +64001,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045079", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001079", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002399", "pred" : "is_a", @@ -60989,10 +64009,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002387", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000389" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000835", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002072", "pred" : "is_a", @@ -61005,22 +64021,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001310" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000225", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002217", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000572", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000715", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000329", "pred" : "is_a", @@ -61033,42 +64037,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045066", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000105", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000702", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000095", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005929", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0120025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000077" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001744", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001739" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000330", + "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000077" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000968", + "sub" : "http://purl.obolibrary.org/obo/PATO_0000330", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001634", "pred" : "is_a", @@ -61077,10 +64065,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000588", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000238", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000967", "pred" : "is_a", @@ -61093,6 +64077,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001720", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001719" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009892", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048519" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001266", "pred" : "is_a", @@ -61110,33 +64098,33 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000358", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0051098", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0005488" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001732", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001729" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002203", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002388" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000985", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000973" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001040", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002034", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001173", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/RO_0002203", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002387" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000478", + "sub" : "http://purl.obolibrary.org/obo/GO_1902532", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0009968" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001161", "pred" : "is_a", @@ -61150,25 +64138,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001066", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0023051", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0023052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000322", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001209", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000598", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000465", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001208", "pred" : "is_a", @@ -61190,9 +64166,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001568", + "sub" : "http://purl.obolibrary.org/obo/GO_1902533", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_1902531" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001718", "pred" : "is_a", @@ -61205,6 +64181,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000984", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000973" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0032092", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043393" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002383", "pred" : "is_a", @@ -61229,10 +64209,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001526", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001520" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000833", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045040", "pred" : "is_a", @@ -61257,10 +64233,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000713", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001424", "pred" : "is_a", @@ -61277,6 +64249,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001474", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040021", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001576", "pred" : "is_a", @@ -61289,10 +64265,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001405", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001404" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000966", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001422", "pred" : "is_a", @@ -61301,6 +64273,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001670", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001152" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002411", "pred" : "is_a", @@ -61325,10 +64301,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002511", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000940", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001527", "pred" : "is_a", @@ -61338,17 +64310,21 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002062" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000820", + "sub" : "http://purl.obolibrary.org/obo/GO_0009966", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0010646" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045076", + "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001943", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000951" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045076", - "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" + "sub" : "http://purl.obolibrary.org/obo/GO_0031324", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0044237" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002341", "pred" : "is_a", @@ -61365,10 +64341,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001830", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000888" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000607", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002243", "pred" : "is_a", @@ -61377,10 +64349,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000597", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001892", "pred" : "is_a", @@ -61389,14 +64357,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002408", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000081", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000727", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002516", "pred" : "is_a", @@ -61409,22 +64369,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000224", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002205", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002226", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002194", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002226", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001912", "pred" : "is_a", @@ -61433,14 +64389,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001733", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001729" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000104", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000451", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0060001", "pred" : "is_a", @@ -61457,10 +64405,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000569", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000237", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015024", "pred" : "is_a", @@ -61489,22 +64433,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001972", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000571", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002404", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000094", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000847", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001810", "pred" : "is_a", @@ -61513,10 +64445,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001982", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000714", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001265", "pred" : "is_a", @@ -61529,10 +64457,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001065", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002254", "pred" : "is_a", @@ -61553,6 +64477,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002013", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1902533", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0009967" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001264", "pred" : "is_a", @@ -61565,10 +64493,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045086", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000357", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000321", "pred" : "is_a", @@ -61577,54 +64501,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045084" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001078", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000477", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001566", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000211", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001198", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000515", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001046" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001336", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001589", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002353", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000961", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0098772", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0065009" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001185", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001060", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045022", "pred" : "is_a", @@ -61633,22 +64529,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045046", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002136" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000974", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001203", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000841", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001180", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000499", "pred" : "is_a", @@ -61670,9 +64550,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001086", + "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0048585" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002381", "pred" : "is_a", @@ -61689,18 +64569,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002406", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002405" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001216", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002264" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001073", + "sub" : "http://purl.obolibrary.org/obo/GO_0033673", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051348" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0007154", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001558", "pred" : "is_a", @@ -61721,10 +64601,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005022", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000351", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002219", "pred" : "is_a", @@ -61733,10 +64609,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045063", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000747", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002521", "pred" : "is_a", @@ -61749,14 +64621,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045073", "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000867", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000952", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0023056", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0023051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001438", "pred" : "is_a", @@ -61773,10 +64645,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002200", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002198" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000471", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002512", "pred" : "is_a", @@ -61789,18 +64657,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002210", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000601", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001443", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000854", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", "pred" : "is_a", @@ -61838,25 +64694,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000734", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001535", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001533" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002123", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001535", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001533" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001432", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000721", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002391", "pred" : "is_a", @@ -61873,10 +64721,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045050", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000987", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002225", "pred" : "is_a", @@ -61885,10 +64729,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001698", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000378", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002428", "pred" : "is_a", @@ -61898,29 +64738,25 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002190" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000258", + "sub" : "http://purl.obolibrary.org/obo/GO_0048522", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0048518" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044093", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0065009" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001741", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001740" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002473", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001552", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000138", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000508", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000005", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0020002", "pred" : "is_a", @@ -61929,10 +64765,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000186", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001812", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001491", "pred" : "is_a", @@ -61941,22 +64773,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0003824", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0003674" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000485", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002165", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000352", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000748", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_0051174", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0006793" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002108", "pred" : "is_a", @@ -61985,18 +64809,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001272", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000320" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001099", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002036", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001109", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045005", "pred" : "is_a", @@ -62006,17 +64822,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000232", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_1902532", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0035556" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045094", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045090" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000112", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000407", "pred" : "is_a", @@ -62038,33 +64850,25 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0050001" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000245", + "sub" : "http://purl.obolibrary.org/obo/GO_0009966", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0023051" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001215", + "sub" : "http://purl.obolibrary.org/obo/GO_0009967", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0009966" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001072", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/RO_0002203", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002286" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001196", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000720", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002480", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001448" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000840", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000365", "pred" : "is_a", @@ -62077,10 +64881,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000504", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000853", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000999", "pred" : "is_a", @@ -62089,6 +64889,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002447", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009967", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048584" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002211", "pred" : "is_a", @@ -62101,10 +64905,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001435", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001108", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002429", "pred" : "subPropertyOf", @@ -62117,22 +64917,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001454", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000085" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001085", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002501", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000632", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001228", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002501", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002405", "pred" : "subPropertyOf", @@ -62141,10 +64933,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002407", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002405" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000230", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002394", "pred" : "is_a", @@ -62153,14 +64941,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000498", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000960", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000879", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002287", "pred" : "is_a", @@ -62178,21 +64958,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001688", + "sub" : "http://purl.obolibrary.org/obo/GO_0045937", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" + "obj" : "http://purl.obolibrary.org/obo/GO_0019220" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000483", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001688", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001367", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000350", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001657", "pred" : "is_a", @@ -62201,10 +64977,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000583", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000128" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000746", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045064", "pred" : "is_a", @@ -62221,10 +64993,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045074", "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0023057", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0023051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000951", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0031325", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0044237" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002451", "pred" : "is_a", @@ -62257,14 +65037,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002401", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001202", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000986", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", "pred" : "is_a", @@ -62281,22 +65053,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002237", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000590", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001887", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001886" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000866", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000733", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002535", "pred" : "is_a", @@ -62313,6 +65073,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045084", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044092", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0065009" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001898", "pred" : "is_a", @@ -62321,10 +65085,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002193", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000137", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002264", "pred" : "is_a", @@ -62333,18 +65093,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002536", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000377", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001811", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", "pred" : "is_a", @@ -62354,21 +65106,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000497", + "sub" : "http://purl.obolibrary.org/obo/GO_0048523", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0048519" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002143", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001481" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000364", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000507", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000950", "pred" : "is_a", @@ -62397,14 +65141,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001682", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002429", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002216", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002429", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002192", "pred" : "is_a", @@ -62417,10 +65161,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002073", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000484", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002011", "pred" : "is_a", @@ -62437,10 +65177,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0001558" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000231", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002037", "pred" : "is_a", @@ -62453,10 +65189,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000759", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000111", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015001", "pred" : "is_a", @@ -62465,22 +65197,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002041" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001098", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000244", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045024", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001035" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000124", + "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0009966" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002428", "pred" : "subPropertyOf", @@ -62493,10 +65217,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000503", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000257", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000516", "pred" : "is_a", @@ -62505,14 +65225,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000587", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000117" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000830", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000700", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0120025", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", + "obj" : "http://purl.obolibrary.org/obo/GO_0098590" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", "pred" : "is_a", @@ -62541,10 +65261,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001187", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001062", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001905", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", @@ -62562,29 +65278,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001182", + "sub" : "http://purl.obolibrary.org/obo/GO_0007165", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000600", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000921" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000603", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000856", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002404", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002427" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000593", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000019", "pred" : "is_a", @@ -62593,38 +65297,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002297", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000736", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001483", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002291" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000580", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002087", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000723", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001327", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001324" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0045936", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0019220" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000989", + "sub" : "http://purl.obolibrary.org/obo/PATO_0040024", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001354", "pred" : "is_a", @@ -62657,30 +65353,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001792", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001565", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000976", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001316", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000843", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001654", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001652" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000710", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002168", "pred" : "is_a", @@ -62694,29 +65374,25 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045090" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000091", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000114", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/RO_0002254", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002255" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001459" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000354", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_1900122", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0005102" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001993", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001992" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000247", + "sub" : "http://purl.obolibrary.org/obo/GO_0050896", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040020", "pred" : "is_a", @@ -62745,10 +65421,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000127", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", "pred" : "is_a", @@ -62757,10 +65429,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001321", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000474", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", @@ -62773,10 +65441,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002175", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000341", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001576", "pred" : "is_a", @@ -62785,14 +65449,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001839", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048583", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0050896" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000062", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001530" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000604", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001696", "pred" : "is_a", @@ -62806,29 +65470,21 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000594", + "sub" : "http://purl.obolibrary.org/obo/GO_0051338", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0050790" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001303", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000737", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001261", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000322" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000007", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001088", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "sub" : "http://purl.obolibrary.org/obo/GO_1902533", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0035556" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001670", "pred" : "is_a", @@ -62838,21 +65494,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0030000" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", + "sub" : "http://purl.obolibrary.org/obo/GO_0031325", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + "obj" : "http://purl.obolibrary.org/obo/GO_0048522" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001218", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001683", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001075", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002047", "pred" : "is_a", @@ -62862,9 +65514,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000136" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000221", + "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0023057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001510", "pred" : "is_a", @@ -62873,10 +65525,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002247", "pred" : "http://purl.obolibrary.org/obo/pato#correlates_with", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000101", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001790", "pred" : "is_a", @@ -62897,22 +65545,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002290" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000234", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001181", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045090", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001204", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", "pred" : "is_a", @@ -62921,10 +65557,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002505", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001404" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000962", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001186", "pred" : "is_a", @@ -62937,14 +65569,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000957", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001217", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001074", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005634", "pred" : "is_a", @@ -62957,22 +65581,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000586", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000117" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001061", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000472", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000988", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002224", "pred" : "is_a", @@ -62981,26 +65593,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001328", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001325" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000602", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000646" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000868", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001437", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001435" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000735", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002630", "pred" : "subPropertyOf", @@ -63013,26 +65613,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001194", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002155", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002261", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001793", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000722", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002155", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000975", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001793", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001994", "pred" : "is_a", @@ -63042,17 +65634,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000842", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002070", "pred" : "is_a", @@ -63065,10 +65653,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001304", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000855", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", "pred" : "is_a", @@ -63081,6 +65665,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000953", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043229", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0005622" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002190", "pred" : "is_a", @@ -63097,22 +65685,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001697", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000246", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000509", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002156", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000126", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045093", "pred" : "is_a", @@ -63121,10 +65697,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001322", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000486", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001577", "pred" : "is_a", @@ -63133,18 +65705,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001852", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002181" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000259", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000353", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000749", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002035", "pred" : "is_a", @@ -63153,22 +65713,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001857", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002005" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000869", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000139", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000006", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000473", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000760", "pred" : "is_a", @@ -63177,10 +65721,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001551", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000340", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001684", "pred" : "is_a", @@ -63205,14 +65745,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001339", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001087", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000220", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000619", "pred" : "is_a", @@ -63225,30 +65757,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001511", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000100", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000367", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000233", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000379", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000090", - "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000113", + "sub" : "http://purl.obolibrary.org/obo/GO_0009967", "pred" : "is_a", - "obj" : "http://www.w3.org/2002/07/owl#Thing" + "obj" : "http://purl.obolibrary.org/obo/GO_0023056" } ], "id" : "http://purl.obolibrary.org/obo/pato/pato-full.json", "meta" : { @@ -63270,7 +65786,7 @@ "pred" : "http://www.geneontology.org/formats/oboInOwl#saved-by", "val" : "segerdel" } ], - "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-09-13/pato-full.json" + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29/pato-full.json" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ { @@ -63287,6 +65803,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0019220", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0006796" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001693", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000998" ], @@ -63357,6 +65880,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043229", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0043226" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/BFO_0000050", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0005622" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045032", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000299" ], @@ -63665,6 +66195,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0032091", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0005515" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001997", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000070" ], @@ -63672,6 +66209,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_1902531", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0035556" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045044", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001025" ], @@ -63700,6 +66244,27 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051098", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0005488" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048518", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048519", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001795", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000404" ], @@ -63722,15 +66287,15 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045075", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001615" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045035", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001655" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045035", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001655" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045075", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001615" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" @@ -63763,6 +66328,27 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0065009", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0003674" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001776", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001544" ], @@ -63784,6 +66370,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0032092", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0005515" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045022", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002243" ], @@ -63791,6 +66384,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0033674", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0016301" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002282", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000299" ], @@ -63928,6 +66528,20 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010562", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0006793" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010563", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0006793" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002305", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001241" ], @@ -63956,6 +66570,20 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009967", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009968", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045034", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002027" ], @@ -63963,6 +66591,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0042327", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0016310" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001899", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001648" ], @@ -63984,6 +66619,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0033673", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0016301" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001624", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001510" ], @@ -63991,6 +66633,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051338", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0016740" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001621", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001620" ], @@ -64005,6 +66654,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010646", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0007154" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0015027", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0015026" ], @@ -64040,6 +66696,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051100", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0005488" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045048", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001806" ], @@ -64117,6 +66780,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0042326", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0016310" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002148", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002146" ], @@ -64208,6 +66878,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0050794", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0009987" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0015004", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0015002" ], @@ -64257,6 +66934,20 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043086", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043085", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002029", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002027" ], @@ -64271,6 +66962,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0042325", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0016310" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001596", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001595" ], @@ -64299,6 +66997,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0120025", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0042995" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/BFO_0000051", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0098590" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001695", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000273" ], @@ -64306,6 +67011,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0019222", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0008152" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002327", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002326" ], @@ -64313,6 +67025,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009966", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0015025", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000973" ], @@ -64334,6 +67053,20 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048522", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0009987" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048523", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0009987" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000583", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000128" ], @@ -64362,6 +67095,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0050789", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002288", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001171" ], @@ -64369,6 +67109,20 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0035556", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0007165" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/BFO_0000066", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0005622" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043549", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0016301" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000600", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000921" ], @@ -64397,6 +67151,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043393", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0005515" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045005", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000011" ], @@ -64425,6 +67186,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_1900122", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0005102" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001926", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001290" ], @@ -64474,6 +67242,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0098797", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0032991" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/BFO_0000050", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0005886" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045043", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001687" ], @@ -64488,6 +67263,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0044093", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0003674" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000380", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000044" ], @@ -64516,6 +67298,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_1900121", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0005102" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001308", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001314" ], @@ -64523,6 +67312,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009893", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0008152" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001844", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001842" ], @@ -64593,6 +67389,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0044092", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0003674" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001592", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000406" ], @@ -64614,6 +67417,20 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0031324", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0044237" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_1900120", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0005102" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001475", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000140" ], @@ -64632,6 +67449,20 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051347", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0016740" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051348", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0016740" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001808", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001806" ], @@ -64744,6 +67575,20 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010648", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0007154" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010647", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0007154" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045078", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001314" ], @@ -64758,6 +67603,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0050790", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045013", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000406" ], @@ -64807,6 +67659,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0031323", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0044237" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001476", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000140" ], @@ -64828,6 +67687,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_1902532", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0035556" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0010004", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0010002" ], @@ -64849,6 +67715,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051174", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0006793" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001472", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001595" ], @@ -64982,6 +67855,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009892", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0008152" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002052", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000057" ], @@ -65003,6 +67883,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_1902533", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0035556" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045055", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001334" ], @@ -65024,6 +67911,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0045936", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0006796" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001622", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001620" ], @@ -65059,6 +67953,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0031325", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0044237" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001843", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001842" ], @@ -65073,6 +67974,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051099", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0005488" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045001", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001241" ], @@ -65108,6 +68016,20 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048584", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0050896" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048585", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0050896" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002287", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001171" ], @@ -65171,6 +68093,20 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0045937", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0006796" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0098590", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0016020" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/BFO_0000050", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0005886" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045088", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001457" ], @@ -65276,6 +68212,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023051", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001651", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001178" ], @@ -65304,6 +68247,20 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0098796", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0032991" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/BFO_0000050", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0016020" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048583", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0050896" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002028", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002027" ], @@ -65418,6 +68375,14 @@ "predicateId" : "http://purl.obolibrary.org/obo/pato#directly_associated_with", "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002473", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002595", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], @@ -65444,9 +68409,9 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000050", "allValuesFromEdges" : [ { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -65459,11 +68424,19 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" } ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002506", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/pato#has_divisor_quality", "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470" ], @@ -65495,6 +68468,10 @@ "predicateId" : "http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to", "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002384", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002019", "domainClassIds" : [ "http://purl.obolibrary.org/obo/GO_0004872" ] @@ -65513,6 +68490,10 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002434", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002258", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002479", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], @@ -65551,6 +68532,9 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002430", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002255", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002203", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002428", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002211" ] @@ -65596,6 +68580,9 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000063", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000063" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002131", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002596", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002211" ] @@ -65623,6 +68610,9 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002327", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002202" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002211", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002578", "http://purl.obolibrary.org/obo/RO_0002578" ] diff --git a/pato-full.obo b/pato-full.obo index dcf5b4e0..43bd558a 100644 --- a/pato-full.obo +++ b/pato-full.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: pato/releases/2019-09-13/pato-full.owl +data-version: pato/releases/2019-10-29/pato-full.owl date: 07:02:2018 10:27 saved-by: segerdel auto-generated-by: OBO-Edit 2.3.1 @@ -8,9 +8,25 @@ subsetdef: absent_slim "Absent/present slim" subsetdef: attribute_slim "Attribute slim" subsetdef: cell_quality "cell_quality" subsetdef: disposition_slim "Disposition slim" +subsetdef: gocheck_do_not_annotate "" +subsetdef: gocheck_do_not_manually_annotate "" +subsetdef: goslim_agr "" +subsetdef: goslim_aspergillus "" +subsetdef: goslim_candida "" +subsetdef: goslim_chembl "" +subsetdef: goslim_flybase_ribbon "" +subsetdef: goslim_generic "" +subsetdef: goslim_metagenomics "" +subsetdef: goslim_mouse "" +subsetdef: goslim_pir "" +subsetdef: goslim_plant "" +subsetdef: goslim_pombe "" +subsetdef: goslim_yeast "" subsetdef: hpo_slim "Human phenotype slim" subsetdef: mpath_slim "Pathology slim" subsetdef: relational_slim "Relational slim: types of quality that require an additional entity in order to exist" +subsetdef: ro-eco "" +subsetdef: RO:0002259 "" subsetdef: scalar_slim "Scalar slim" subsetdef: value_slim "Value slim" default-namespace: quality @@ -43,6 +59,12 @@ name: process def: "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." [] is_a: BFO:0000003 ! occurrent +[Term] +id: BFO:0000019 +name: quality +is_a: BFO:0000020 ! specifically dependent continuant +relationship: part_of BFO:0000019 ! quality + [Term] id: BFO:0000020 name: specifically dependent continuant @@ -101,98 +123,1669 @@ property_value: IAO:0000412 http://purl.obolibrary.org/obo/cl.owl [Term] id: GO:0003674 name: molecular_function +namespace: molecular_function +alt_id: GO:0005554 +def: "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process." [GOC:pdt] +comment: Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex. +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +subset: goslim_yeast +synonym: "molecular function" EXACT [] is_a: BFO:0000015 ! process property_value: IAO:0000589 "molecular process" xsd:string [Term] id: GO:0003824 name: catalytic activity +namespace: molecular_function +def: "Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic." [GOC:vw, ISBN:0198506732] +subset: goslim_agr +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +synonym: "enzyme activity" EXACT [GOC:dph, GOC:tb] +xref: Wikipedia:Enzyme +is_a: GO:0003674 ! molecular_function + +[Term] +id: GO:0005102 +name: signaling receptor binding +namespace: molecular_function +def: "Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function." [GOC:bf, GOC:ceb, ISBN:0198506732] +comment: Where appropriate, also consider annotating to 'receptor agonist activity ; GO:0048018'. +subset: goslim_agr +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_mouse +subset: goslim_plant +synonym: "receptor binding" BROAD [] +synonym: "receptor ligand" NARROW [] +synonym: "receptor-associated protein activity" RELATED [] +xref: Wikipedia:Ligand_(biochemistry) +is_a: GO:0005515 ! protein binding + +[Term] +id: GO:0005488 +name: binding +namespace: molecular_function +def: "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule." [GOC:ceb, GOC:mah, ISBN:0198506732] +comment: Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children. +subset: gocheck_do_not_annotate +subset: goslim_pir +subset: goslim_plant +synonym: "ligand" NARROW [] +xref: Wikipedia:Binding_(molecular) is_a: GO:0003674 ! molecular_function +[Term] +id: GO:0005515 +name: protein binding +namespace: molecular_function +alt_id: GO:0001948 +alt_id: GO:0045308 +def: "Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules)." [GOC:go_curators] +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +synonym: "glycoprotein binding" NARROW [] +synonym: "protein amino acid binding" EXACT [] +xref: MIPS_funcat:16.01 +xref: MIPS_funcat:18.01.07 +xref: Reactome:R-HSA-170835 "An anchoring protein, ZFYVE9 (SARA), recruits SMAD2/3" +xref: Reactome:R-HSA-170846 "TGFBR2 recruits TGFBR1" +is_a: GO:0005488 ! binding + [Term] id: GO:0005575 name: cellular_component +namespace: cellular_component +alt_id: GO:0008372 +def: "A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome)." [GOC:pdt, NIF_Subcellular:sao1337158144] +comment: Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +subset: goslim_yeast +synonym: "cell or subcellular entity" EXACT [] +synonym: "cellular component" EXACT [] +synonym: "subcellular entity" RELATED [NIF_Subcellular:nlx_subcell_100315] +xref: NIF_Subcellular:sao1337158144 + +[Term] +id: GO:0005622 +name: intracellular +namespace: cellular_component +def: "The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." [ISBN:0198506732] +subset: gocheck_do_not_annotate +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_plant +synonym: "internal to cell" EXACT [] +synonym: "nucleocytoplasm" RELATED [GOC:mah] +synonym: "protoplasm" EXACT [] +synonym: "protoplast" RELATED [GOC:mah] +xref: Wikipedia:Intracellular +is_a: GO:0005575 ! cellular_component [Term] id: GO:0005623 name: cell +namespace: cellular_component +def: "The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope." [GOC:go_curators] +subset: goslim_chembl +subset: goslim_generic +subset: goslim_plant +xref: NIF_Subcellular:sao1813327414 +xref: Wikipedia:Cell_(biology) is_a: GO:0005575 ! cellular_component +property_value: IAO:0000589 "cell and encapsulating structures" xsd:string [Term] id: GO:0005634 name: nucleus +namespace: cellular_component +def: "A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent." [GOC:go_curators] +subset: goslim_agr +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_mouse +subset: goslim_pir +subset: goslim_plant +subset: goslim_yeast +synonym: "cell nucleus" EXACT [] +synonym: "horsetail nucleus" NARROW [GOC:al, GOC:mah, GOC:vw, PMID:15030757] +xref: MIPS_funcat:70.10 +xref: NIF_Subcellular:sao1702920020 +xref: Wikipedia:Cell_nucleus is_a: GO:0043231 ! intracellular membrane-bounded organelle +is_a: GO:0044464 ! obsolete cell part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl +[Term] +id: GO:0005886 +name: plasma membrane +namespace: cellular_component +alt_id: GO:0005904 +def: "The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins." [ISBN:0716731363] +subset: goslim_agr +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_mouse +subset: goslim_plant +subset: goslim_yeast +synonym: "bacterial inner membrane" NARROW [] +synonym: "cell membrane" EXACT [] +synonym: "cellular membrane" EXACT [NIF_Subcellular:sao6433132645] +synonym: "cytoplasmic membrane" EXACT [] +synonym: "inner endospore membrane" NARROW [] +synonym: "juxtamembrane" BROAD [] +synonym: "plasma membrane lipid bilayer" NARROW [GOC:mah] +synonym: "plasmalemma" EXACT [] +xref: NIF_Subcellular:sao1663586795 +xref: Wikipedia:Cell_membrane +is_a: GO:0016020 ! membrane +relationship: part_of GO:0071944 ! cell periphery + [Term] id: GO:0005929 name: cilium +namespace: cellular_component +alt_id: GO:0072372 +def: "A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body." [GOC:cilia, GOC:curators, GOC:kmv, GOC:vw, ISBN:0198547684, PMID:16824949, PMID:17009929, PMID:20144998] +comment: Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms. +subset: goslim_chembl +subset: goslim_generic +subset: goslim_pir +synonym: "eukaryotic flagellum" EXACT [] +synonym: "flagellum" RELATED [] +synonym: "microtubule-based flagellum" EXACT [] +synonym: "primary cilium" NARROW [] +xref: FMA:67181 +xref: NIF_Subcellular:sao787716553 +xref: Wikipedia:Cilium is_a: GO:0043226 ! organelle is_a: GO:0120025 ! plasma membrane bounded cell projection +relationship: has_part GO:0030990 ! intraciliary transport particle + +[Term] +id: GO:0006793 +name: phosphorus metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4)." [GOC:ai] +subset: goslim_pir +synonym: "phosphorus metabolism" EXACT [] +is_a: GO:0044237 ! cellular metabolic process + +[Term] +id: GO:0006796 +name: phosphate-containing compound metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid." [GOC:ai] +synonym: "phosphate metabolic process" RELATED [] +synonym: "phosphate metabolism" EXACT [] +xref: MIPS_funcat:01.04 +is_a: GO:0006793 ! phosphorus metabolic process + +[Term] +id: GO:0007154 +name: cell communication +namespace: biological_process +def: "Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:mah] +subset: goslim_pir +subset: goslim_plant +xref: Wikipedia:Cell_signaling +is_a: GO:0009987 ! cellular process + +[Term] +id: GO:0007165 +name: signal transduction +namespace: biological_process +alt_id: GO:0023033 +def: "The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell." [GOC:go_curators, GOC:mtg_signaling_feb11] +comment: Note that signal transduction is defined broadly to include a ligand interacting with a receptor, downstream signaling steps and a response being triggered. A change in form of the signal in every step is not necessary. Note that in many cases the end of this process is regulation of the initiation of transcription. Note that specific transcription factors may be annotated to this term, but core/general transcription machinery such as RNA polymerase should not. +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_plant +synonym: "signaling cascade" NARROW [] +synonym: "signaling pathway" RELATED [] +synonym: "signalling cascade" NARROW [] +synonym: "signalling pathway" RELATED [GOC:mah] +xref: MIPS_funcat:30 +xref: Wikipedia:Signal_transduction +is_a: GO:0009987 ! cellular process +is_a: GO:0050794 ! regulation of cellular process +relationship: part_of GO:0007154 ! cell communication +relationship: part_of GO:0023052 ! signaling +relationship: part_of GO:0051716 ! cellular response to stimulus [Term] id: GO:0008150 name: biological_process +namespace: biological_process +alt_id: GO:0000004 +alt_id: GO:0007582 +alt_id: GO:0044699 +def: "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." [GOC:pdt] +comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +subset: goslim_pombe +subset: goslim_yeast +synonym: "biological process" EXACT [] +synonym: "physiological process" EXACT [] +synonym: "single organism process" RELATED [] +synonym: "single-organism process" RELATED [] +xref: Wikipedia:Biological_process is_a: BFO:0000015 ! process +created_by: janelomax +creation_date: 2012-09-19T15:05:24Z + +[Term] +id: GO:0008152 +name: metabolic process +namespace: biological_process +alt_id: GO:0044236 +alt_id: GO:0044710 +def: "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation." [GOC:go_curators, ISBN:0198547684] +comment: Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions. +subset: gocheck_do_not_manually_annotate +subset: goslim_chembl +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +synonym: "metabolic process resulting in cell growth" NARROW [] +synonym: "metabolism" EXACT [] +synonym: "metabolism resulting in cell growth" NARROW [] +synonym: "multicellular organism metabolic process" NARROW [] +synonym: "single-organism metabolic process" RELATED [] +xref: MIPS_funcat:01 +xref: Wikipedia:Metabolism +is_a: GO:0008150 ! biological_process +created_by: janelomax +creation_date: 2012-10-17T15:46:40Z + +[Term] +id: GO:0009892 +name: negative regulation of metabolic process +namespace: biological_process +alt_id: GO:0044252 +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism." [GOC:go_curators] +synonym: "down regulation of metabolic process" EXACT [] +synonym: "down-regulation of metabolic process" EXACT [] +synonym: "downregulation of metabolic process" EXACT [] +synonym: "inhibition of metabolic process" NARROW [] +synonym: "inhibition of organismal metabolic process" NARROW [] +synonym: "negative regulation of metabolism" EXACT [] +synonym: "negative regulation of multicellular organismal metabolic process" NARROW [] +synonym: "negative regulation of organismal metabolism" EXACT [] +is_a: GO:0019222 ! regulation of metabolic process +is_a: GO:0048519 ! negative regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0008152 ! metabolic process +relationship: negatively_regulates GO:0008152 ! metabolic process + +[Term] +id: GO:0009893 +name: positive regulation of metabolic process +namespace: biological_process +alt_id: GO:0044253 +def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism." [GOC:go_curators] +synonym: "activation of metabolic process" NARROW [] +synonym: "positive regulation of metabolism" EXACT [] +synonym: "positive regulation of multicellular organismal metabolic process" NARROW [] +synonym: "positive regulation of organismal metabolism" NARROW [] +synonym: "stimulation of metabolic process" NARROW [] +synonym: "stimulation of organismal metabolic process" NARROW [] +synonym: "up regulation of metabolic process" EXACT [] +synonym: "up-regulation of metabolic process" EXACT [] +synonym: "up-regulation of organismal metabolic process" NARROW [] +synonym: "upregulation of metabolic process" EXACT [] +is_a: GO:0019222 ! regulation of metabolic process +is_a: GO:0048518 ! positive regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0008152 ! metabolic process +relationship: positively_regulates GO:0008152 ! metabolic process + +[Term] +id: GO:0009966 +name: regulation of signal transduction +namespace: biological_process +alt_id: GO:0035466 +def: "Any process that modulates the frequency, rate or extent of signal transduction." [GOC:sm] +synonym: "regulation of signaling pathway" RELATED [] +synonym: "regulation of signalling pathway" RELATED [GOC:mah] +is_a: GO:0010646 ! regulation of cell communication +is_a: GO:0023051 ! regulation of signaling +is_a: GO:0048583 ! regulation of response to stimulus +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0007165 ! signal transduction +relationship: regulates GO:0007165 ! signal transduction + +[Term] +id: GO:0009967 +name: positive regulation of signal transduction +namespace: biological_process +alt_id: GO:0035468 +def: "Any process that activates or increases the frequency, rate or extent of signal transduction." [GOC:sm] +synonym: "activation of signal transduction" NARROW [] +synonym: "positive regulation of signaling pathway" RELATED [] +synonym: "positive regulation of signalling pathway" RELATED [GOC:mah] +synonym: "stimulation of signal transduction" NARROW [] +synonym: "up regulation of signal transduction" EXACT [] +synonym: "up-regulation of signal transduction" EXACT [] +synonym: "upregulation of signal transduction" EXACT [] +is_a: GO:0009966 ! regulation of signal transduction +is_a: GO:0010647 ! positive regulation of cell communication +is_a: GO:0023056 ! positive regulation of signaling +is_a: GO:0048584 ! positive regulation of response to stimulus +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0007165 ! signal transduction +relationship: positively_regulates GO:0007165 ! signal transduction + +[Term] +id: GO:0009968 +name: negative regulation of signal transduction +namespace: biological_process +alt_id: GO:0035467 +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction." [GOC:sm] +synonym: "down regulation of signal transduction" EXACT [] +synonym: "down-regulation of signal transduction" EXACT [] +synonym: "downregulation of signal transduction" EXACT [] +synonym: "inhibition of signal transduction" NARROW [] +synonym: "negative regulation of signaling pathway" RELATED [] +synonym: "negative regulation of signalling pathway" RELATED [GOC:mah] +is_a: GO:0009966 ! regulation of signal transduction +is_a: GO:0010648 ! negative regulation of cell communication +is_a: GO:0023057 ! negative regulation of signaling +is_a: GO:0048585 ! negative regulation of response to stimulus +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0007165 ! signal transduction +relationship: negatively_regulates GO:0007165 ! signal transduction + +[Term] +id: GO:0009987 +name: cellular process +namespace: biological_process +alt_id: GO:0008151 +alt_id: GO:0044763 +alt_id: GO:0050875 +def: "Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:go_curators, GOC:isa_complete] +subset: goslim_plant +synonym: "cell growth and/or maintenance" NARROW [] +synonym: "cell physiology" EXACT [] +synonym: "cellular physiological process" EXACT [] +synonym: "single-organism cellular process" RELATED [] +is_a: GO:0008150 ! biological_process +created_by: janelomax +creation_date: 2012-12-11T16:56:55Z + +[Term] +id: GO:0010562 +name: positive regulation of phosphorus metabolic process +namespace: biological_process +def: "Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus." [GOC:dph, GOC:tb] +is_a: GO:0031325 ! positive regulation of cellular metabolic process +is_a: GO:0051174 ! regulation of phosphorus metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0006793 ! phosphorus metabolic process +relationship: positively_regulates GO:0006793 ! phosphorus metabolic process + +[Term] +id: GO:0010563 +name: negative regulation of phosphorus metabolic process +namespace: biological_process +def: "Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus." [GOC:dph, GOC:tb] +is_a: GO:0031324 ! negative regulation of cellular metabolic process +is_a: GO:0051174 ! regulation of phosphorus metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0006793 ! phosphorus metabolic process +relationship: negatively_regulates GO:0006793 ! phosphorus metabolic process + +[Term] +id: GO:0010646 +name: regulation of cell communication +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:dph, GOC:tb] +is_a: GO:0050794 ! regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0007154 ! cell communication +relationship: regulates GO:0007154 ! cell communication + +[Term] +id: GO:0010647 +name: positive regulation of cell communication +namespace: biological_process +def: "Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:dph, GOC:tb] +is_a: GO:0010646 ! regulation of cell communication +is_a: GO:0048522 ! positive regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0007154 ! cell communication +relationship: positively_regulates GO:0007154 ! cell communication + +[Term] +id: GO:0010648 +name: negative regulation of cell communication +namespace: biological_process +def: "Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:dph, GOC:tb] +is_a: GO:0010646 ! regulation of cell communication +is_a: GO:0048523 ! negative regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0007154 ! cell communication +relationship: negatively_regulates GO:0007154 ! cell communication + +[Term] +id: GO:0016020 +name: membrane +namespace: cellular_component +def: "A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it." [GOC:dos, GOC:mah, ISBN:0815316194] +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +subset: goslim_yeast +xref: Wikipedia:Biological_membrane +is_a: GO:0110165 ! cellular anatomical entity [Term] id: GO:0016301 name: kinase activity +namespace: molecular_function +def: "Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [ISBN:0198506732] +comment: Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term. +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_plant +subset: goslim_yeast +synonym: "phosphokinase activity" EXACT [] +xref: Reactome:R-HSA-6788855 "FN3KRP phosphorylates PsiAm, RibAm" +xref: Reactome:R-HSA-6788867 "FN3K phosphorylates ketosamines" is_a: GO:0016772 ! transferase activity, transferring phosphorus-containing groups +relationship: part_of GO:0016310 ! phosphorylation + +[Term] +id: GO:0016310 +name: phosphorylation +namespace: biological_process +def: "The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide." [ISBN:0198506732] +subset: goslim_chembl +subset: goslim_metagenomics +xref: Wikipedia:Phosphorylation +is_a: GO:0006796 ! phosphate-containing compound metabolic process [Term] id: GO:0016740 name: transferase activity +namespace: molecular_function +def: "Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2." [ISBN:0198506732] +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_metagenomics +subset: goslim_mouse +subset: goslim_pir +subset: goslim_plant +subset: goslim_yeast +xref: EC:2 +xref: Reactome:R-HSA-1483089 "PE is converted to PS by PTDSS2" +xref: Reactome:R-HSA-1483186 "PC is converted to PS by PTDSS1" +xref: Reactome:R-HSA-5668414 "TRAF2 ubiquitinates cIAP1,2 in cIAP1,2:TRAF1:TRAF2:TRAF3:NIK" +xref: Reactome:R-HSA-6787403 "GTPBP3 and MTO1 transform uridine-34 yielding 5-taurinomethyluridine-34 in tRNA" +xref: Reactome:R-HSA-8868783 "TSR3 transfers aminocarboxypropyl group from S-adenosylmethionine to N(1)-methylpseudouridine-1248 of 18SE rRNA yielding N(1)-methyl-N(3)-aminocarboxypropylpseudouridine-1248" is_a: GO:0003824 ! catalytic activity [Term] id: GO:0016772 name: transferase activity, transferring phosphorus-containing groups +namespace: molecular_function +def: "Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor)." [GOC:jl, ISBN:0198506732] +comment: Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides. +subset: goslim_chembl +xref: EC:2.7 is_a: GO:0016740 ! transferase activity +[Term] +id: GO:0019220 +name: regulation of phosphate metabolic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates." [GOC:go_curators] +synonym: "regulation of phosphate metabolism" EXACT [] +is_a: GO:0051174 ! regulation of phosphorus metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0006796 ! phosphate-containing compound metabolic process +relationship: regulates GO:0006796 ! phosphate-containing compound metabolic process + +[Term] +id: GO:0019222 +name: regulation of metabolic process +namespace: biological_process +alt_id: GO:0044246 +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism." [GOC:go_curators] +subset: goslim_metagenomics +synonym: "regulation of metabolism" EXACT [] +synonym: "regulation of multicellular organismal metabolic process" NARROW [] +synonym: "regulation of organismal metabolic process" NARROW [GOC:tb] +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0008152 ! metabolic process +relationship: regulates GO:0008152 ! metabolic process + +[Term] +id: GO:0023051 +name: regulation of signaling +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of a signaling process." [GOC:mtg_signal] +synonym: "regulation of signaling process" RELATED [GOC:bf] +synonym: "regulation of signalling process" RELATED [GOC:mah] +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0023052 ! signaling +relationship: regulates GO:0023052 ! signaling +creation_date: 2010-02-16T09:30:50Z + +[Term] +id: GO:0023052 +name: signaling +namespace: biological_process +alt_id: GO:0023046 +alt_id: GO:0044700 +def: "The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered." [GOC:mtg_signal, GOC:mtg_signaling_feb11, GOC:signaling] +comment: Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change. +subset: goslim_agr +subset: goslim_flybase_ribbon +subset: goslim_mouse +subset: goslim_pombe +subset: goslim_yeast +synonym: "biological signaling" EXACT [] +synonym: "signaling process" EXACT [] +synonym: "signalling" EXACT [] +synonym: "signalling process" RELATED [GOC:mah] +synonym: "single organism signaling" RELATED [] +is_a: GO:0008150 ! biological_process +created_by: janelomax +creation_date: 2010-02-16T09:30:50Z + +[Term] +id: GO:0023056 +name: positive regulation of signaling +namespace: biological_process +def: "Any process that activates, maintains or increases the frequency, rate or extent of a signaling process." [GOC:mtg_signal] +synonym: "positive regulation of signaling process" RELATED [GOC:bf] +synonym: "positive regulation of signalling process" EXACT [GOC:mah] +is_a: GO:0023051 ! regulation of signaling +is_a: GO:0048518 ! positive regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0023052 ! signaling +relationship: positively_regulates GO:0023052 ! signaling +creation_date: 2010-02-16T09:30:50Z + +[Term] +id: GO:0023057 +name: negative regulation of signaling +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process." [GOC:mtg_signal] +synonym: "negative regulation of signaling process" RELATED [GOC:bf] +synonym: "negative regulation of signalling process" RELATED [GOC:mah] +is_a: GO:0023051 ! regulation of signaling +is_a: GO:0048519 ! negative regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0023052 ! signaling +relationship: negatively_regulates GO:0023052 ! signaling +creation_date: 2010-02-16T09:30:50Z + +[Term] +id: GO:0030545 +name: receptor regulator activity +namespace: molecular_function +def: "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed." [GOC:ceb] +xref: MIPS_funcat:18.02.07 +is_a: GO:0098772 ! molecular function regulator + +[Term] +id: GO:0030546 +name: signaling receptor activator activity +namespace: molecular_function +def: "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased." [GOC:ceb] +synonym: "receptor activator activity" BROAD [] +is_a: GO:0030545 ! receptor regulator activity + +[Term] +id: GO:0030990 +name: intraciliary transport particle +namespace: cellular_component +def: "A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules." [GOC:cilia, GOC:kmv, PMID:14570576, PMID:22118932, PMID:23945166] +comment: Note that we deem cilia and microtubule-based flagella to be equivalent. +subset: goslim_pir +synonym: "IFT complex" RELATED [] +synonym: "intraflagellar transport complex" EXACT [] +synonym: "intraflagellar transport particle" EXACT [] +is_a: GO:0032991 ! protein-containing complex + +[Term] +id: GO:0031323 +name: regulation of cellular metabolic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances." [GOC:mah] +synonym: "regulation of cellular metabolism" EXACT [] +is_a: GO:0019222 ! regulation of metabolic process +is_a: GO:0050794 ! regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0044237 ! cellular metabolic process +relationship: regulates GO:0044237 ! cellular metabolic process + +[Term] +id: GO:0031324 +name: negative regulation of cellular metabolic process +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances." [GOC:mah] +synonym: "down regulation of cellular metabolic process" EXACT [] +synonym: "down-regulation of cellular metabolic process" EXACT [] +synonym: "downregulation of cellular metabolic process" EXACT [] +synonym: "inhibition of cellular metabolic process" NARROW [] +synonym: "negative regulation of cellular metabolism" EXACT [] +is_a: GO:0009892 ! negative regulation of metabolic process +is_a: GO:0031323 ! regulation of cellular metabolic process +is_a: GO:0048523 ! negative regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0044237 ! cellular metabolic process +relationship: negatively_regulates GO:0044237 ! cellular metabolic process + +[Term] +id: GO:0031325 +name: positive regulation of cellular metabolic process +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances." [GOC:mah] +synonym: "activation of cellular metabolic process" NARROW [] +synonym: "positive regulation of cellular metabolism" EXACT [] +synonym: "stimulation of cellular metabolic process" NARROW [] +synonym: "up regulation of cellular metabolic process" EXACT [] +synonym: "up-regulation of cellular metabolic process" EXACT [] +synonym: "upregulation of cellular metabolic process" EXACT [] +is_a: GO:0009893 ! positive regulation of metabolic process +is_a: GO:0031323 ! regulation of cellular metabolic process +is_a: GO:0048522 ! positive regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0044237 ! cellular metabolic process +relationship: positively_regulates GO:0044237 ! cellular metabolic process + +[Term] +id: GO:0032091 +name: negative regulation of protein binding +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding." [GOC:mah] +synonym: "down regulation of protein binding" EXACT [] +synonym: "down-regulation of protein binding" EXACT [] +synonym: "downregulation of protein binding" EXACT [] +synonym: "inhibition of protein binding" NARROW [] +is_a: GO:0043393 ! regulation of protein binding +is_a: GO:0051100 ! negative regulation of binding +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0005515 ! protein binding +relationship: negatively_regulates GO:0005515 ! protein binding + +[Term] +id: GO:0032092 +name: positive regulation of protein binding +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of protein binding." [GOC:mah] +synonym: "activation of protein binding" NARROW [] +synonym: "stimulation of protein binding" NARROW [] +synonym: "up regulation of protein binding" EXACT [] +synonym: "up-regulation of protein binding" EXACT [] +synonym: "upregulation of protein binding" EXACT [] +is_a: GO:0043393 ! regulation of protein binding +is_a: GO:0051099 ! positive regulation of binding +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0005515 ! protein binding +relationship: positively_regulates GO:0005515 ! protein binding + +[Term] +id: GO:0032991 +name: protein-containing complex +namespace: cellular_component +alt_id: GO:0043234 +def: "A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together." [GOC:dos, GOC:mah] +comment: A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole. +subset: goslim_agr +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_generic +subset: goslim_pir +synonym: "macromolecular complex" EXACT [] +synonym: "macromolecule complex" EXACT [] +synonym: "protein complex" NARROW [] +synonym: "protein containing complex" EXACT [] +synonym: "protein-protein complex" NARROW [] +is_a: GO:0005575 ! cellular_component + +[Term] +id: GO:0033673 +name: negative regulation of kinase activity +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [GOC:mah] +synonym: "down regulation of kinase activity" EXACT [] +synonym: "down-regulation of kinase activity" EXACT [] +synonym: "downregulation of kinase activity" EXACT [] +synonym: "inhibition of kinase activity" NARROW [] +synonym: "kinase inhibitor" NARROW [] +is_a: GO:0042326 ! negative regulation of phosphorylation +is_a: GO:0043549 ! regulation of kinase activity +is_a: GO:0051348 ! negative regulation of transferase activity +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0016301 ! kinase activity +relationship: negatively_regulates GO:0016301 ! kinase activity + +[Term] +id: GO:0033674 +name: positive regulation of kinase activity +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [GOC:mah] +synonym: "kinase activator" NARROW [] +synonym: "stimulation of kinase activity" NARROW [] +synonym: "up regulation of kinase activity" EXACT [] +synonym: "up-regulation of kinase activity" EXACT [] +synonym: "upregulation of kinase activity" EXACT [] +is_a: GO:0042327 ! positive regulation of phosphorylation +is_a: GO:0043549 ! regulation of kinase activity +is_a: GO:0051347 ! positive regulation of transferase activity +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0016301 ! kinase activity +relationship: positively_regulates GO:0016301 ! kinase activity + +[Term] +id: GO:0035556 +name: intracellular signal transduction +namespace: biological_process +alt_id: GO:0007242 +alt_id: GO:0007243 +alt_id: GO:0023013 +alt_id: GO:0023034 +def: "The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell." [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782] +synonym: "intracellular protein kinase cascade" NARROW [GOC:signaling] +synonym: "intracellular signal transduction pathway" NARROW [] +synonym: "intracellular signaling cascade" RELATED [GOC:signaling] +synonym: "intracellular signaling chain" EXACT [ISBN:3527303782] +synonym: "intracellular signaling pathway" RELATED [] +synonym: "protein kinase cascade" NARROW [GOC:signaling] +synonym: "signal transduction via intracellular signaling cascade" RELATED [] +synonym: "signal transmission via intracellular cascade" NARROW [] +is_a: GO:0007165 ! signal transduction +intersection_of: GO:0007165 ! signal transduction +intersection_of: occurs_in GO:0005622 ! intracellular +relationship: occurs_in GO:0005622 ! intracellular +created_by: rfoulger +creation_date: 2010-05-14T01:14:37Z + +[Term] +id: GO:0038023 +alt_id: GO:0004872 + +[Term] +id: GO:0042325 +name: regulation of phosphorylation +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule." [GOC:jl] +is_a: GO:0019220 ! regulation of phosphate metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0016310 ! phosphorylation +relationship: regulates GO:0016310 ! phosphorylation + +[Term] +id: GO:0042326 +name: negative regulation of phosphorylation +namespace: biological_process +def: "Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule." [GOC:jl] +synonym: "down regulation of phosphorylation" EXACT [] +synonym: "down-regulation of phosphorylation" EXACT [] +synonym: "downregulation of phosphorylation" EXACT [] +synonym: "inhibition of phosphorylation" NARROW [] +is_a: GO:0042325 ! regulation of phosphorylation +is_a: GO:0045936 ! negative regulation of phosphate metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0016310 ! phosphorylation +relationship: negatively_regulates GO:0016310 ! phosphorylation + +[Term] +id: GO:0042327 +name: positive regulation of phosphorylation +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule." [GOC:jl] +synonym: "activation of phosphorylation" NARROW [] +synonym: "stimulation of phosphorylation" NARROW [] +synonym: "up regulation of phosphorylation" EXACT [] +synonym: "up-regulation of phosphorylation" EXACT [] +synonym: "upregulation of phosphorylation" EXACT [] +is_a: GO:0042325 ! regulation of phosphorylation +is_a: GO:0045937 ! positive regulation of phosphate metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0016310 ! phosphorylation +relationship: positively_regulates GO:0016310 ! phosphorylation + [Term] id: GO:0042995 name: cell projection -is_a: GO:0044464 ! cell part +namespace: cellular_component +def: "A prolongation or process extending from a cell, e.g. a flagellum or axon." [GOC:jl, http://www.cogsci.princeton.edu/~wn/] +subset: goslim_agr +subset: goslim_flybase_ribbon +subset: goslim_mouse +subset: goslim_pir +synonym: "cell process" BROAD [] +synonym: "cellular process" BROAD [] +synonym: "cellular projection" EXACT [] +is_a: GO:0044464 ! obsolete cell part +is_a: GO:0110165 ! cellular anatomical entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl + +[Term] +id: GO:0043085 +name: positive regulation of catalytic activity +namespace: biological_process +alt_id: GO:0048554 +def: "Any process that activates or increases the activity of an enzyme." [GOC:ebc, GOC:jl, GOC:tb, GOC:vw] +subset: goslim_chembl +synonym: "activation of enzyme activity" NARROW [] +synonym: "activation of metalloenzyme activity" NARROW [] +synonym: "positive regulation of enzyme activity" EXACT [GOC:tb] +synonym: "positive regulation of metalloenzyme activity" NARROW [] +synonym: "stimulation of enzyme activity" NARROW [] +synonym: "stimulation of metalloenzyme activity" NARROW [] +synonym: "up regulation of enzyme activity" EXACT [] +synonym: "up regulation of metalloenzyme activity" NARROW [] +synonym: "up-regulation of enzyme activity" EXACT [] +synonym: "up-regulation of metalloenzyme activity" NARROW [] +synonym: "upregulation of enzyme activity" EXACT [] +synonym: "upregulation of metalloenzyme activity" NARROW [] +xref: MIPS_funcat:18.02.01.01 +is_a: GO:0044093 ! positive regulation of molecular function +is_a: GO:0050790 ! regulation of catalytic activity +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0003824 ! catalytic activity +relationship: positively_regulates GO:0003824 ! catalytic activity + +[Term] +id: GO:0043086 +name: negative regulation of catalytic activity +namespace: biological_process +alt_id: GO:0048553 +def: "Any process that stops or reduces the activity of an enzyme." [GOC:ebc, GOC:jl, GOC:tb, GOC:vw] +synonym: "down regulation of enzyme activity" EXACT [] +synonym: "down regulation of metalloenzyme activity" NARROW [] +synonym: "down-regulation of enzyme activity" EXACT [] +synonym: "down-regulation of metalloenzyme activity" EXACT [] +synonym: "downregulation of enzyme activity" EXACT [] +synonym: "downregulation of metalloenzyme activity" NARROW [] +synonym: "inhibition of enzyme activity" NARROW [] +synonym: "inhibition of metalloenzyme activity" NARROW [] +synonym: "negative regulation of enzyme activity" EXACT [GOC:tb] +synonym: "negative regulation of metalloenzyme activity" NARROW [] +is_a: GO:0044092 ! negative regulation of molecular function +is_a: GO:0050790 ! regulation of catalytic activity +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0003824 ! catalytic activity +relationship: negatively_regulates GO:0003824 ! catalytic activity [Term] id: GO:0043226 name: organelle -is_a: GO:0005575 ! cellular_component +namespace: cellular_component +def: "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane." [GOC:go_curators] +subset: goslim_chembl +subset: goslim_generic +subset: goslim_pir +xref: NIF_Subcellular:sao1539965131 +xref: Wikipedia:Organelle +is_a: GO:0110165 ! cellular anatomical entity [Term] id: GO:0043227 name: membrane-bounded organelle +namespace: cellular_component +def: "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." [GOC:go_curators] +synonym: "membrane-enclosed organelle" EXACT [] +xref: NIF_Subcellular:sao414196390 is_a: GO:0043226 ! organelle [Term] id: GO:0043229 name: intracellular organelle +namespace: cellular_component +def: "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." [GOC:go_curators] +subset: goslim_pir is_a: GO:0043226 ! organelle -is_a: GO:0044424 ! intracellular part +intersection_of: GO:0043226 ! organelle +intersection_of: part_of GO:0005622 ! intracellular +relationship: part_of GO:0005622 ! intracellular [Term] id: GO:0043231 name: intracellular membrane-bounded organelle +namespace: cellular_component +def: "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." [GOC:go_curators] +subset: goslim_pir +synonym: "intracellular membrane-enclosed organelle" EXACT [] is_a: GO:0043227 ! membrane-bounded organelle is_a: GO:0043229 ! intracellular organelle +[Term] +id: GO:0043393 +name: regulation of protein binding +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of protein binding." [GOC:go_curators] +is_a: GO:0051098 ! regulation of binding +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0005515 ! protein binding +relationship: regulates GO:0005515 ! protein binding + +[Term] +id: GO:0043549 +name: regulation of kinase activity +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [GOC:bf] +is_a: GO:0042325 ! regulation of phosphorylation +is_a: GO:0051338 ! regulation of transferase activity +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0016301 ! kinase activity +relationship: regulates GO:0016301 ! kinase activity + +[Term] +id: GO:0044092 +name: negative regulation of molecular function +namespace: biological_process +def: "Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding." [GO:jl] +is_a: GO:0065009 ! regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0003674 ! molecular_function +relationship: negatively_regulates GO:0003674 ! molecular_function +created_by: jane +creation_date: 2009-04-21T04:07:27Z + +[Term] +id: GO:0044093 +name: positive regulation of molecular function +namespace: biological_process +def: "Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding." [GO:jl] +is_a: GO:0065009 ! regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0003674 ! molecular_function +relationship: positively_regulates GO:0003674 ! molecular_function +created_by: jane +creation_date: 2009-04-21T04:11:06Z + +[Term] +id: GO:0044237 +name: cellular metabolic process +namespace: biological_process +def: "The chemical reactions and pathways by which individual cells transform chemical substances." [GOC:go_curators] +synonym: "cellular metabolism" EXACT [] +synonym: "intermediary metabolism" RELATED [GOC:mah] +is_a: GO:0008152 ! metabolic process +is_a: GO:0009987 ! cellular process + [Term] id: GO:0044424 -name: intracellular part -is_a: GO:0044464 ! cell part +name: obsolete intracellular part +namespace: cellular_component +def: "OBSOLETE. Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." [GOC:jl] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_annotate +is_obsolete: true +consider: GO:0005622 [Term] id: GO:0044464 name: cell part +name: obsolete cell part +namespace: cellular_component +def: "OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms." [GOC:jl] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_annotate +subset: goslim_pir +synonym: "cellular subcomponent" EXACT [NIF_Subcellular:sao628508602] +synonym: "protoplast" RELATED [GOC:mah] +xref: NIF_Subcellular:sao628508602 is_a: CARO:0000014 ! cell part -is_a: GO:0005575 ! cellular_component property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl +is_obsolete: true +consider: CL:0000000 + +[Term] +id: GO:0045936 +name: negative regulation of phosphate metabolic process +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates." [GOC:go_curators] +synonym: "down regulation of phosphate metabolic process" EXACT [] +synonym: "down-regulation of phosphate metabolic process" EXACT [] +synonym: "downregulation of phosphate metabolic process" EXACT [] +synonym: "inhibition of phosphate metabolic process" NARROW [] +synonym: "negative regulation of phosphate metabolism" EXACT [] +is_a: GO:0010563 ! negative regulation of phosphorus metabolic process +is_a: GO:0019220 ! regulation of phosphate metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0006796 ! phosphate-containing compound metabolic process +relationship: negatively_regulates GO:0006796 ! phosphate-containing compound metabolic process + +[Term] +id: GO:0045937 +name: positive regulation of phosphate metabolic process +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates." [GOC:go_curators] +synonym: "activation of phosphate metabolic process" NARROW [] +synonym: "positive regulation of phosphate metabolism" EXACT [] +synonym: "stimulation of phosphate metabolic process" NARROW [] +synonym: "up regulation of phosphate metabolic process" EXACT [] +synonym: "up-regulation of phosphate metabolic process" EXACT [] +synonym: "upregulation of phosphate metabolic process" EXACT [] +is_a: GO:0010562 ! positive regulation of phosphorus metabolic process +is_a: GO:0019220 ! regulation of phosphate metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0006796 ! phosphate-containing compound metabolic process +relationship: positively_regulates GO:0006796 ! phosphate-containing compound metabolic process + +[Term] +id: GO:0048018 +name: receptor ligand activity +namespace: molecular_function +alt_id: GO:0071884 +def: "The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands)." [GOC:kv, GOC:molecular_function_refactoring, GOC:pdt] +comment: Definition discussed in https://github.com/geneontology/go-ontology/issues/14220 +subset: goslim_chembl +synonym: "receptor agonist activity" BROAD [GOC:molecular_function_refactoring] +synonym: "signaling molecule" EXACT [] +synonym: "signaling receptor ligand activity" EXACT [] +synonym: "vitamin D receptor activator activity" NARROW [] +is_a: GO:0005102 ! signaling receptor binding +is_a: GO:0030546 ! signaling receptor activator activity +relationship: part_of GO:0007165 ! signal transduction +created_by: midori +creation_date: 2010-09-13T04:51:59Z + +[Term] +id: GO:0048518 +name: positive regulation of biological process +namespace: biological_process +alt_id: GO:0043119 +def: "Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." [GOC:jid] +subset: gocheck_do_not_annotate +synonym: "activation of biological process" NARROW [] +synonym: "positive regulation of physiological process" EXACT [] +synonym: "stimulation of biological process" NARROW [] +synonym: "up regulation of biological process" EXACT [] +synonym: "up-regulation of biological process" EXACT [] +synonym: "upregulation of biological process" EXACT [] +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0008150 ! biological_process +relationship: positively_regulates GO:0008150 ! biological_process + +[Term] +id: GO:0048519 +name: negative regulation of biological process +namespace: biological_process +alt_id: GO:0043118 +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." [GOC:jid] +subset: gocheck_do_not_annotate +synonym: "down regulation of biological process" EXACT [] +synonym: "down-regulation of biological process" EXACT [] +synonym: "downregulation of biological process" EXACT [] +synonym: "inhibition of biological process" NARROW [] +synonym: "negative regulation of physiological process" EXACT [] +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0008150 ! biological_process +relationship: negatively_regulates GO:0008150 ! biological_process + +[Term] +id: GO:0048522 +name: positive regulation of cellular process +namespace: biological_process +alt_id: GO:0051242 +def: "Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:jid] +synonym: "activation of cellular process" NARROW [] +synonym: "positive regulation of cellular physiological process" EXACT [] +synonym: "stimulation of cellular process" NARROW [] +synonym: "up regulation of cellular process" EXACT [] +synonym: "up-regulation of cellular process" EXACT [] +synonym: "upregulation of cellular process" EXACT [] +is_a: GO:0048518 ! positive regulation of biological process +is_a: GO:0050794 ! regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0009987 ! cellular process +relationship: positively_regulates GO:0009987 ! cellular process + +[Term] +id: GO:0048523 +name: negative regulation of cellular process +namespace: biological_process +alt_id: GO:0051243 +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:jid] +synonym: "down regulation of cellular process" EXACT [] +synonym: "down-regulation of cellular process" EXACT [] +synonym: "downregulation of cellular process" EXACT [] +synonym: "inhibition of cellular process" NARROW [] +synonym: "negative regulation of cellular physiological process" EXACT [] +is_a: GO:0048519 ! negative regulation of biological process +is_a: GO:0050794 ! regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0009987 ! cellular process +relationship: negatively_regulates GO:0009987 ! cellular process + +[Term] +id: GO:0048583 +name: regulation of response to stimulus +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus." [GOC:jid] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_manually_annotate +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0050896 ! response to stimulus +relationship: regulates GO:0050896 ! response to stimulus + +[Term] +id: GO:0048584 +name: positive regulation of response to stimulus +namespace: biological_process +def: "Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus." [GOC:jid] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_manually_annotate +synonym: "activation of response to stimulus" NARROW [] +synonym: "stimulation of response to stimulus" NARROW [] +synonym: "up regulation of response to stimulus" EXACT [] +synonym: "up-regulation of response to stimulus" EXACT [] +synonym: "upregulation of response to stimulus" EXACT [] +is_a: GO:0048518 ! positive regulation of biological process +is_a: GO:0048583 ! regulation of response to stimulus +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0050896 ! response to stimulus +relationship: positively_regulates GO:0050896 ! response to stimulus + +[Term] +id: GO:0048585 +name: negative regulation of response to stimulus +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus." [GOC:jid] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_manually_annotate +synonym: "down regulation of response to stimulus" EXACT [] +synonym: "down-regulation of response to stimulus" EXACT [] +synonym: "downregulation of response to stimulus" EXACT [] +synonym: "inhibition of response to stimulus" NARROW [] +is_a: GO:0048519 ! negative regulation of biological process +is_a: GO:0048583 ! regulation of response to stimulus +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0050896 ! response to stimulus +relationship: negatively_regulates GO:0050896 ! response to stimulus + +[Term] +id: GO:0050789 +name: regulation of biological process +namespace: biological_process +alt_id: GO:0050791 +def: "Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." [GOC:ai, GOC:go_curators] +subset: gocheck_do_not_annotate +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_pir +synonym: "regulation of physiological process" EXACT [] +is_a: GO:0065007 ! biological regulation +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0008150 ! biological_process +relationship: regulates GO:0008150 ! biological_process + +[Term] +id: GO:0050790 +name: regulation of catalytic activity +namespace: biological_process +alt_id: GO:0048552 +def: "Any process that modulates the activity of an enzyme." [GOC:ai, GOC:ebc, GOC:vw] +subset: goslim_chembl +synonym: "regulation of enzyme activity" EXACT [] +synonym: "regulation of metalloenzyme activity" NARROW [] +xref: MIPS_funcat:18.02.01 +is_a: GO:0065009 ! regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0003824 ! catalytic activity +relationship: regulates GO:0003824 ! catalytic activity + +[Term] +id: GO:0050794 +name: regulation of cellular process +namespace: biological_process +alt_id: GO:0051244 +def: "Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:go_curators] +synonym: "regulation of cellular physiological process" EXACT [] +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0009987 ! cellular process +relationship: regulates GO:0009987 ! cellular process + +[Term] +id: GO:0050896 +name: response to stimulus +namespace: biological_process +alt_id: GO:0051869 +def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." [GOC:ai, GOC:bf] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_manually_annotate +subset: goslim_agr +subset: goslim_flybase_ribbon +subset: goslim_mouse +subset: goslim_pir +synonym: "physiological response to stimulus" EXACT [] +xref: MIPS_funcat:34.11 +is_a: GO:0008150 ! biological_process + +[Term] +id: GO:0051098 +name: regulation of binding +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule." [GOC:ai] +is_a: GO:0065009 ! regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0005488 ! binding +relationship: regulates GO:0005488 ! binding + +[Term] +id: GO:0051099 +name: positive regulation of binding +namespace: biological_process +def: "Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule." [GOC:ai] +synonym: "activation of binding" NARROW [] +synonym: "stimulation of binding" NARROW [] +synonym: "up regulation of binding" EXACT [] +synonym: "up-regulation of binding" EXACT [] +synonym: "upregulation of binding" EXACT [] +is_a: GO:0044093 ! positive regulation of molecular function +is_a: GO:0051098 ! regulation of binding +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0005488 ! binding +relationship: positively_regulates GO:0005488 ! binding + +[Term] +id: GO:0051100 +name: negative regulation of binding +namespace: biological_process +def: "Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule." [GOC:ai] +synonym: "down regulation of binding" EXACT [] +synonym: "down-regulation of binding" EXACT [] +synonym: "downregulation of binding" EXACT [] +synonym: "inhibition of binding" NARROW [] +is_a: GO:0044092 ! negative regulation of molecular function +is_a: GO:0051098 ! regulation of binding +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0005488 ! binding +relationship: negatively_regulates GO:0005488 ! binding + +[Term] +id: GO:0051174 +name: regulation of phosphorus metabolic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus." [GOC:ai] +synonym: "regulation of phosphorus metabolism" EXACT [] +is_a: GO:0031323 ! regulation of cellular metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0006793 ! phosphorus metabolic process +relationship: regulates GO:0006793 ! phosphorus metabolic process + +[Term] +id: GO:0051338 +name: regulation of transferase activity +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2." [EC:2.-.-.-, GOC:ai] +comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. +subset: gocheck_do_not_manually_annotate +synonym: "transferase regulator" EXACT [] +is_a: GO:0050790 ! regulation of catalytic activity +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0016740 ! transferase activity +relationship: regulates GO:0016740 ! transferase activity + +[Term] +id: GO:0051347 +name: positive regulation of transferase activity +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor." [GOC:ai] +comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. +subset: gocheck_do_not_manually_annotate +synonym: "activation of transferase activity" NARROW [] +synonym: "stimulation of transferase activity" NARROW [] +synonym: "transferase activator" EXACT [] +synonym: "up regulation of transferase activity" EXACT [] +synonym: "up-regulation of transferase activity" EXACT [] +synonym: "upregulation of transferase activity" EXACT [] +is_a: GO:0043085 ! positive regulation of catalytic activity +is_a: GO:0051338 ! regulation of transferase activity +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0016740 ! transferase activity +relationship: positively_regulates GO:0016740 ! transferase activity + +[Term] +id: GO:0051348 +name: negative regulation of transferase activity +namespace: biological_process +def: "Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor." [GOC:ai] +comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. +subset: gocheck_do_not_manually_annotate +synonym: "down regulation of transferase activity" EXACT [] +synonym: "down-regulation of transferase activity" EXACT [] +synonym: "downregulation of transferase activity" EXACT [] +synonym: "inhibition of transferase activity" NARROW [] +synonym: "transferase inhibitor" EXACT [] +is_a: GO:0043086 ! negative regulation of catalytic activity +is_a: GO:0051338 ! regulation of transferase activity +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0016740 ! transferase activity +relationship: negatively_regulates GO:0016740 ! transferase activity + +[Term] +id: GO:0051716 +name: cellular response to stimulus +namespace: biological_process +def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell." [GOC:bf, GOC:jl] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_manually_annotate +is_a: GO:0009987 ! cellular process +is_a: GO:0050896 ! response to stimulus + +[Term] +id: GO:0065007 +name: biological regulation +namespace: biological_process +def: "Any process that modulates a measurable attribute of any biological process, quality or function." [GOC:dph, GOC:isa_complete, GOC:mah, GOC:pr, GOC:vw] +subset: gocheck_do_not_annotate +subset: goslim_pir +synonym: "regulation" BROAD [] +is_a: GO:0008150 ! biological_process + +[Term] +id: GO:0065009 +name: regulation of molecular function +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding." [GOC:isa_complete] +subset: gocheck_do_not_annotate +subset: goslim_pir +subset: goslim_plant +synonym: "regulation of a molecular function" EXACT [] +is_a: GO:0065007 ! biological regulation +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0003674 ! molecular_function +relationship: regulates GO:0003674 ! molecular_function + +[Term] +id: GO:0071944 +name: cell periphery +namespace: cellular_component +def: "The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures." [GOC:mah] +subset: goslim_flybase_ribbon +is_a: GO:0110165 ! cellular anatomical entity +created_by: midori +creation_date: 2010-10-04T01:51:47Z + +[Term] +id: GO:0098590 +name: plasma membrane region +namespace: cellular_component +def: "A membrane that is a (regional) part of the plasma membrane." [GOC:dos] +comment: Note that this term should not be used for direct manual annotation as it should always be possible to choose a more specific subclass. +subset: gocheck_do_not_manually_annotate +synonym: "region of plasma membrane" EXACT [] +is_a: GO:0016020 ! membrane +intersection_of: GO:0016020 ! membrane +intersection_of: part_of GO:0005886 ! plasma membrane +relationship: part_of GO:0005886 ! plasma membrane +created_by: davidos +creation_date: 2014-03-06T11:55:32Z + +[Term] +id: GO:0098772 +name: molecular function regulator +namespace: molecular_function +def: "A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators." [GOC:dos, GOC:pt] +subset: goslim_flybase_ribbon +is_a: GO:0003674 ! molecular_function +relationship: part_of GO:0065009 ! regulation of molecular function + +[Term] +id: GO:0098796 +name: membrane protein complex +namespace: cellular_component +def: "Any protein complex that is part of a membrane." [GOC:dos] +subset: goslim_metagenomics +is_a: GO:0032991 ! protein-containing complex +intersection_of: GO:0032991 ! protein-containing complex +intersection_of: part_of GO:0016020 ! membrane +relationship: part_of GO:0016020 ! membrane + +[Term] +id: GO:0098797 +name: plasma membrane protein complex +namespace: cellular_component +def: "Any protein complex that is part of the plasma membrane." [GOC:dos] +is_a: GO:0098796 ! membrane protein complex +intersection_of: GO:0032991 ! protein-containing complex +intersection_of: part_of GO:0005886 ! plasma membrane +relationship: part_of GO:0005886 ! plasma membrane + +[Term] +id: GO:0110165 +name: cellular anatomical entity +namespace: cellular_component +def: "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex." [GOC:kmv] +is_a: GO:0005575 ! cellular_component +created_by: kmv +creation_date: 2019-08-12T18:01:37Z [Term] id: GO:0120025 name: plasma membrane bounded cell projection +namespace: cellular_component +def: "A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon." [GOC:krc] is_a: GO:0042995 ! cell projection +intersection_of: GO:0042995 ! cell projection +intersection_of: has_part GO:0098590 ! plasma membrane region +relationship: has_part GO:0098590 ! plasma membrane region +created_by: kchris +creation_date: 2017-03-21T17:26:07Z + +[Term] +id: GO:1900120 +name: regulation of receptor binding +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor." [GOC:signaling, GOC:TermGenie] +synonym: "regulation of receptor ligand" NARROW [GOC:TermGenie] +is_a: GO:0043393 ! regulation of protein binding +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0005102 ! signaling receptor binding +relationship: regulates GO:0005102 ! signaling receptor binding +created_by: bf +creation_date: 2012-02-22T11:40:53Z + +[Term] +id: GO:1900121 +name: negative regulation of receptor binding +namespace: biological_process +def: "Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor." [GOC:signaling, GOC:TermGenie] +synonym: "down regulation of receptor binding" EXACT [GOC:TermGenie] +synonym: "down regulation of receptor-associated protein activity" RELATED [GOC:TermGenie] +synonym: "down-regulation of receptor binding" EXACT [GOC:TermGenie] +synonym: "downregulation of receptor binding" EXACT [GOC:TermGenie] +synonym: "inhibition of receptor binding" NARROW [GOC:TermGenie] +synonym: "inhibition of receptor ligand" NARROW [GOC:TermGenie] +is_a: GO:0032091 ! negative regulation of protein binding +is_a: GO:1900120 ! regulation of receptor binding +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0005102 ! signaling receptor binding +relationship: negatively_regulates GO:0005102 ! signaling receptor binding +created_by: bf +creation_date: 2012-02-22T11:40:57Z + +[Term] +id: GO:1900122 +name: positive regulation of receptor binding +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor." [GOC:signaling, GOC:TermGenie] +synonym: "activation of receptor binding" NARROW [GOC:TermGenie] +synonym: "up regulation of receptor binding" EXACT [GOC:TermGenie] +synonym: "upregulation of receptor binding" EXACT [GOC:TermGenie] +is_a: GO:0032092 ! positive regulation of protein binding +is_a: GO:1900120 ! regulation of receptor binding +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0005102 ! signaling receptor binding +relationship: positively_regulates GO:0005102 ! signaling receptor binding +created_by: bf +creation_date: 2012-02-22T11:41:00Z + +[Term] +id: GO:1902531 +name: regulation of intracellular signal transduction +namespace: biological_process +alt_id: GO:0010627 +def: "Any process that modulates the frequency, rate or extent of intracellular signal transduction." [GOC:dph, GOC:signaling, GOC:tb, GOC:TermGenie] +synonym: "regulation of intracellular protein kinase cascade" NARROW [] +synonym: "regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "regulation of intracellular signaling cascade" EXACT [GOC:TermGenie] +synonym: "regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +is_a: GO:0009966 ! regulation of signal transduction +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0035556 ! intracellular signal transduction +relationship: regulates GO:0035556 ! intracellular signal transduction +created_by: bf +creation_date: 2013-12-02T11:32:52Z + +[Term] +id: GO:1902532 +name: negative regulation of intracellular signal transduction +namespace: biological_process +alt_id: GO:0010741 +def: "Any process that stops, prevents or reduces the frequency, rate or extent of intracellular signal transduction." [GOC:dph, GOC:signaling, GOC:tb, GOC:TermGenie] +synonym: "down regulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "down regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "down regulation of intracellular signaling cascade" NARROW [GOC:TermGenie] +synonym: "down regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "down regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "down regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "down regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "down-regulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "down-regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "down-regulation of intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "down-regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "down-regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "down-regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "down-regulation of signal transmission via intracellular cascade" RELATED [GOC:TermGenie] +synonym: "downregulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "downregulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "downregulation of intracellular signaling cascade" NARROW [GOC:TermGenie] +synonym: "downregulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "downregulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "downregulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "downregulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "inhibition of intracellular signal transduction" NARROW [GOC:TermGenie] +synonym: "inhibition of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "inhibition of intracellular signaling cascade" NARROW [GOC:TermGenie] +synonym: "inhibition of intracellular signaling chain" NARROW [GOC:TermGenie] +synonym: "inhibition of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "inhibition of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "inhibition of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "negative regulation of intracellular protein kinase cascade" EXACT [] +synonym: "negative regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "negative regulation of intracellular signaling cascade" EXACT [GOC:TermGenie] +synonym: "negative regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "negative regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "negative regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "negative regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +is_a: GO:0009968 ! negative regulation of signal transduction +is_a: GO:1902531 ! regulation of intracellular signal transduction +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0035556 ! intracellular signal transduction +relationship: negatively_regulates GO:0035556 ! intracellular signal transduction +created_by: bf +creation_date: 2013-12-02T11:33:01Z + +[Term] +id: GO:1902533 +name: positive regulation of intracellular signal transduction +namespace: biological_process +alt_id: GO:0010740 +def: "Any process that activates or increases the frequency, rate or extent of intracellular signal transduction." [GOC:BHF, GOC:dph, GOC:signaling, GOC:tb, GOC:TermGenie] +synonym: "activation of intracellular signal transduction" NARROW [GOC:TermGenie] +synonym: "activation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "activation of intracellular signaling cascade" NARROW [GOC:TermGenie] +synonym: "activation of intracellular signaling chain" NARROW [GOC:TermGenie] +synonym: "activation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "activation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "activation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "positive regulation of intracellular protein kinase cascade" NARROW [] +synonym: "positive regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "positive regulation of intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "positive regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "positive regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "positive regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "positive regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "up regulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "up regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "up regulation of intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "up regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "up regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "up regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "up regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "up-regulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "up-regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "up-regulation of intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "up-regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "up-regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "up-regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "up-regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "upregulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "upregulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "upregulation of intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "upregulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "upregulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "upregulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "upregulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +is_a: GO:0009967 ! positive regulation of signal transduction +is_a: GO:1902531 ! regulation of intracellular signal transduction +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0035556 ! intracellular signal transduction +relationship: positively_regulates GO:0035556 ! intracellular signal transduction +created_by: bf +creation_date: 2013-12-02T11:33:10Z [Term] id: PATO:0000000 @@ -204,6 +1797,8 @@ id: PATO:0000001 name: quality alt_id: PATO:0000072 def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" [PATOC:GVG] +is_a: BFO:0000020 ! specifically dependent continuant +property_value: IAO:0000589 "quality (PATO)" xsd:string [Term] id: PATO:0000002 @@ -531,6 +2126,7 @@ id: PATO:0000051 name: morphology def: "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure." [PATOC:GVG] subset: attribute_slim +is_a: BFO:0000019 ! quality is_a: PATO:0001241 ! physical object quality [Term] @@ -12486,7 +14082,6 @@ def: "A curvature quality inhering in a bearer by virtue of the bearer's being c comment: TODO: obsolete, definition too ambiguous. subset: cell_quality subset: value_slim -synonym: "flared" EXACT [] is_a: PATO:0000406 ! curved [Term] @@ -18057,7 +19652,7 @@ creation_date: 2012-05-03T11:29:38Z [Term] id: PATO:0002372 -name: grand multi[arous +name: grand multiparous def: "A viviparous organism that has given birth five or more times." [wiki:http\://en.wikipedia.org/wiki/Parity_(biology)] subset: value_slim is_a: PATO:0002369 ! multiparous @@ -20597,11 +22192,53 @@ is_a: PATO:0000383 ! female property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-16T22:52:49Z xsd:dateTime +[Term] +id: PATO:0040021 +name: unpaired +def: "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.." [https://orcid.org/0000-0003-3162-7490] +is_a: PATO:0000467 ! present +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 + +[Term] +id: PATO:0040022 +name: flared +def: "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape." [] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:49:07Z xsd:dateTime + +[Term] +id: PATO:0040023 +name: distomedial orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body." [https://en.wiktionary.org/wiki/distomedial] +synonym: "disto-medial orientation" EXACT [] +synonym: "distomedial" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:54:33Z xsd:dateTime + +[Term] +id: PATO:0040024 +name: bilaterally paired +def: "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism." [https://orcid.org/0000-0003-3162-7490] +synonym: "paired" BROAD [] +is_a: PATO:0000467 ! present +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 + [Term] id: PATO:0040025 name: lesioned def: "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present." [NCIT:C3824] is_a: PATO:0000141 ! structure +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 + +[Term] +id: PATO:0040026 +name: structurally discontinuous +def: "A structural quality inhering in a bearer by virtue of the bearer's being marked by interruptions or gaps." [] +comment: This term is intended for use for terms such as MP:0010461 discontinuous pulmonary artery and MP:0004157 interrupted aortic arch. +synonym: "structurally interrupted" EXACT [] +is_a: PATO:0001241 ! physical object quality created_by: http://orcid.org/0000-0001-5208-3432 [Term] @@ -21819,6 +23456,7 @@ creation_date: 2019-08-23T08:51:22Z id: BFO:0000062 name: preceded by def: "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] +subset: ro-eco property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:preceded_by xsd:string property_value: IAO:0000111 "preceded by" xsd:string property_value: IAO:0000116 "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." xsd:string @@ -21835,6 +23473,7 @@ inverse_of: BFO:0000063 ! precedes id: BFO:0000063 name: precedes def: "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] +subset: ro-eco property_value: IAO:0000111 "precedes" xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent @@ -21842,22 +23481,6 @@ holds_over_chain: part_of BFO:0000063 is_transitive: true is_a: RO:0002222 ! temporally related to -[Typedef] -id: BFO:0000066 -name: occurs in -def: "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" [] -comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant -property_value: IAO:0000111 "occurs in" xsd:string -property_value: IAO:0000118 "occurs_in" xsd:string -property_value: IAO:0000118 "unfolds in" xsd:string -property_value: IAO:0000118 "unfolds_in" xsd:string -property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl -domain: BFO:0000003 ! occurrent -range: BFO:0000004 ! independent continuant -holds_over_chain: part_of BFO:0000066 -inverse_of: BFO:0000067 ! contains process -transitive_over: part_of ! part of - [Typedef] id: BFO:0000067 name: contains process @@ -21876,7 +23499,7 @@ property_value: IAO:0000112 "this red color inheres in this apple" xsd:string property_value: IAO:0000116 "A dependent inheres in its bearer at all times for which the dependent exists." xsd:string property_value: IAO:0000118 "inheres_in" xsd:string property_value: RO:0001900 RO:0001901 -is_a: RO:0002314 +is_a: RO:0002314 ! inheres in part of inverse_of: RO:0000053 ! bearer of [Typedef] @@ -21922,59 +23545,103 @@ holds_over_chain: has_part RO:0000057 [Typedef] id: RO:0002013 -is_a: RO:0002017 -is_a: RO:0002334 +name: has regulatory component activity +def: "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B." [] +is_a: RO:0002017 ! has component activity +is_a: RO:0002334 ! regulated by +created_by: dos +creation_date: 2017-05-24T09:30:46Z [Typedef] id: RO:0002014 -is_a: RO:0002013 -is_a: RO:0002335 +name: has negative regulatory component activity +def: "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B." [] +comment: By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'. +is_a: RO:0002013 ! has regulatory component activity +is_a: RO:0002335 ! negatively regulated by +created_by: dos +creation_date: 2017-05-24T09:31:01Z [Typedef] id: RO:0002015 -is_a: RO:0002013 -is_a: RO:0002336 +name: has positive regulatory component activity +def: "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B." [] +comment: By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'. +is_a: RO:0002013 ! has regulatory component activity +is_a: RO:0002336 ! positively regulated by +created_by: dos +creation_date: 2017-05-24T09:31:17Z [Typedef] id: RO:0002017 -is_a: RO:0002018 +name: has component activity +comment: A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B. +is_a: RO:0002018 ! has component process +created_by: dos +creation_date: 2017-05-24T09:44:33Z [Typedef] id: RO:0002018 +name: has component process +def: "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] domain: BFO:0000015 ! process range: BFO:0000015 ! process -is_a: RO:0002180 +is_a: RO:0002180 ! has component +created_by: dos +creation_date: 2017-05-24T09:49:21Z [Typedef] id: RO:0002019 +name: has ligand +def: "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function." [] domain: GO:0004872 -is_a: RO:0002233 +is_a: RO:0002233 ! has input +created_by: dos +creation_date: 2017-07-19T17:30:36Z [Typedef] id: RO:0002022 -is_a: RO:0002334 -inverse_of: RO:0002578 +name: directly regulated by +comment: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2. {xref="GOC:dos"} +is_a: RO:0002334 ! regulated by +inverse_of: RO:0002578 ! directly regulates +created_by: dos +creation_date: 2017-09-17T13:52:24Z [Typedef] id: RO:0002023 -is_a: RO:0002022 -inverse_of: RO:0002630 +name: directly negatively regulated by +def: "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1." [GOC:dos] +is_a: RO:0002022 ! directly regulated by +inverse_of: RO:0002630 ! directly negatively regulates +created_by: dos +creation_date: 2017-09-17T13:52:38Z [Typedef] id: RO:0002024 -is_a: RO:0002022 -inverse_of: RO:0002629 +name: directly positively regulated by +def: "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1." [GOC:dos] +is_a: RO:0002022 ! directly regulated by +inverse_of: RO:0002629 ! directly positively regulates +created_by: dos +creation_date: 2017-09-17T13:52:47Z [Typedef] id: RO:0002025 +name: has effector activity +def: "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity." [GOC:dos] +comment: This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations. is_functional: true -is_a: RO:0002017 -is_a: RO:0002211 +is_a: regulates ! regulates +is_a: RO:0002017 ! has component activity +created_by: dos +creation_date: 2017-09-22T14:14:36Z [Typedef] id: RO:0002086 name: ends after comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) +subset: ro-eco property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string is_transitive: true is_a: RO:0002222 ! temporally related to @@ -21992,369 +23659,824 @@ inverse_of: RO:0002090 ! immediately precedes id: RO:0002090 name: immediately precedes comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) +subset: ro-eco property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string property_value: IAO:0000118 "ends_at_start_of" xsd:string property_value: IAO:0000118 "meets" xsd:string +property_value: RO:0002575 BFO:0000063 is_a: BFO:0000063 ! precedes [Typedef] id: RO:0002131 +name: overlaps +def: "x overlaps y if and only if there exists some z such that x has part z and z part of y" [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: RO:0001900 RO:0001901 holds_over_chain: has_part part_of {http://purl.obolibrary.org/obo/RO_0002582="true"} holds_over_chain: has_part RO:0002131 holds_over_chain: part_of part_of -is_a: RO:0002323 +is_a: RO:0002323 ! mereotopologically related to +transitive_over: part_of ! part_of +expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" [] [Typedef] id: RO:0002180 +name: has component +def: "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." xsd:string +property_value: IAO:0000232 "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." xsd:string +property_value: RO:0001900 RO:0001901 +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:Componency is_a: has_part ! has part [Typedef] -id: RO:0002211 -domain: BFO:0000015 ! process -range: BFO:0000015 ! process -holds_over_chain: RO:0002578 RO:0002578 +id: RO:0002202 +name: develops from +def: "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y" [] +comment: This is the transitive form of the develops from relation +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000117 "Melissa Haendel" xsd:string +property_value: IAO:0000117 "Terry Meehan" xsd:string +domain: BFO:0000004 ! independent continuant +range: BFO:0000004 ! independent continuant is_transitive: true -is_a: RO:0002411 -inverse_of: RO:0002334 - -[Typedef] -id: RO:0002212 -is_a: RO:0002211 -is_a: RO:0002305 -inverse_of: RO:0002335 +is_a: RO:0002258 ! developmentally preceded by +inverse_of: RO:0002203 ! develops into [Typedef] -id: RO:0002213 -holds_over_chain: RO:0002212 RO:0002212 +id: RO:0002203 +name: develops into +def: "inverse of develops from" [] +subset: RO:0002259 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000117 "Terry Meehan" xsd:string is_transitive: true -is_a: RO:0002211 -is_a: RO:0002304 -inverse_of: RO:0002336 +is_a: RO:0002286 ! developmentally succeeded by +is_a: RO:0002387 ! has potential to develop into +is_a: RO:0002388 ! has potential to directly develop into [Typedef] id: RO:0002215 +name: capable of +def: "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. " [] +subset: ro-eco +property_value: IAO:0000112 "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" xsd:string +property_value: IAO:0000112 "osteoclast SubClassOf 'capable of' some 'bone resorption'" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "has function realized in" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20123131 +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/21208450 +property_value: IAO:0000232 "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." xsd:string domain: BFO:0000004 ! independent continuant range: BFO:0000015 ! process -is_a: RO:0002216 +is_a: RO:0002216 ! capable of part of +expand_expression_to: "RO_0000053 some (RO_0000054 only ?Y)" [] [Typedef] id: RO:0002216 +name: capable of part of +def: "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "has function in" xsd:string +property_value: seeAlso "defining-property-chains-involving-reflexivity" holds_over_chain: RO:0002215 part_of {http://purl.obolibrary.org/obo/RO_0002582="true"} -is_a: RO:0002328 -is_a: RO:0002500 +is_a: RO:0002328 ! functionally related to +is_a: RO:0002500 ! causal agent in process +expand_expression_to: "RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))" [] [Typedef] id: RO:0002217 +name: actively participates in +def: "x actively participates in y if and only if x participates in y and x realizes some active role" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "agent in" xsd:string is_a: RO:0000056 ! participates in -inverse_of: RO:0002218 +inverse_of: RO:0002218 ! obsolete has active participant [Typedef] id: RO:0002218 +name: obsolete has active participant +def: "x has participant y if and only if x realizes some active role that inheres in y" [] +subset: ro-eco +property_value: IAO:0000112 "'heart development' has active participant some Shh protein" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "This may be obsoleted and replaced by the original 'has agent' relation" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "has agent" xsd:string is_a: RO:0000057 ! has participant +is_obsolete: true [Typedef] id: RO:0002222 name: temporally related to comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. +subset: ro-eco +property_value: http://purl.org/dc/terms/source https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 xsd:anyURI property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000119 https://en.wikipedia.org/wiki/Allen%27s_interval_algebra +property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent [Typedef] id: RO:0002233 +name: has input +def: "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "consumes" xsd:string domain: BFO:0000015 ! process range: BFO:0000040 ! material entity is_a: RO:0000057 ! has participant -inverse_of: RO:0002352 +inverse_of: RO:0002352 ! input of + +[Typedef] +id: RO:0002254 +name: has developmental contribution from +def: "x has developmental contribution from y iff x has some part z such that z develops from y" [] +property_value: IAO:0000112 "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +domain: CARO:0000000 ! anatomical entity +range: CARO:0000000 ! anatomical entity +holds_over_chain: has_part RO:0002202 +is_a: RO:0002258 ! developmentally preceded by +inverse_of: RO:0002255 ! developmentally contributes to + +[Typedef] +id: RO:0002255 +name: developmentally contributes to +def: "inverse of has developmental contribution from" [] +subset: RO:0002259 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +holds_over_chain: RO:0002203 part_of +is_a: RO:0002286 ! developmentally succeeded by +is_a: RO:0002385 ! has potential to developmentally contribute to + +[Typedef] +id: RO:0002258 +name: developmentally preceded by +def: "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p" [] +comment: This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "false" xsd:boolean +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "In general you should not use this relation to make assertions - use one of the more specific relations below this one" xsd:string +domain: BFO:0000002 ! continuant +range: BFO:0000002 ! continuant +is_a: RO:0002324 ! developmentally related to +inverse_of: RO:0002286 ! developmentally succeeded by [Typedef] id: RO:0002263 +name: acts upstream of +def: "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes." [] +property_value: IAO:0000112 "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." xsd:string +property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of holds_over_chain: RO:0002327 RO:0002411 -is_a: RO:0002264 +is_a: RO:0002264 ! acts upstream of or within [Typedef] id: RO:0002264 +name: acts upstream of or within +def: "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process." [] +synonym: "affects" RELATED [] +property_value: IAO:0000112 "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." xsd:string +property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within holds_over_chain: RO:0002327 RO:0002418 -is_a: RO:0002500 +is_a: RO:0002500 ! causal agent in process + +[Typedef] +id: RO:0002286 +name: developmentally succeeded by +def: "Inverse of developmentally preceded by" [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002384 ! has developmental potential involving [Typedef] id: RO:0002304 -is_a: RO:0002411 -is_a: RO:0004047 +name: causally upstream of, positive effect +comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y +property_value: http://purl.org/dc/terms/creator "cjm" xsd:string +property_value: RO:0004049 RO:0002411 +is_a: RO:0002411 ! causally upstream of +is_a: RO:0004047 ! causally upstream of or within, positive effect [Typedef] id: RO:0002305 -is_a: RO:0002411 -is_a: RO:0004046 +name: causally upstream of, negative effect +comment: holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y +property_value: http://purl.org/dc/terms/creator "cjm" xsd:string +property_value: RO:0004050 RO:0002411 +is_a: RO:0002411 ! causally upstream of +is_a: RO:0004046 ! causally upstream of or within, negative effect [Typedef] id: RO:0002314 +name: inheres in part of +def: "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w." [] +property_value: IAO:0000116 "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20064205 +property_value: RO:0001900 RO:0001901 +property_value: seeAlso "defining-property-chains-involving-reflexivity" holds_over_chain: RO:0000052 part_of {http://purl.obolibrary.org/obo/RO_0002582="true"} -is_a: RO:0002502 -transitive_over: part_of ! part of +is_a: RO:0002502 ! depends on +transitive_over: part_of ! part_of + +[Typedef] +id: RO:0002323 +name: mereotopologically related to +def: "A mereological relationship or a topological relationship" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" xsd:string +property_value: RO:0001900 RO:0001901 + +[Typedef] +id: RO:0002324 +name: developmentally related to +def: "A relationship that holds between entities participating in some developmental process (GO:0032502)" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" xsd:string [Typedef] id: RO:0002327 -is_a: RO:0002215 -inverse_of: RO:0002333 +name: enables +property_value: IAO:0000112 "a particular instances of akt-2 enables some instance of protein kinase activity" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "catalyzes" xsd:string +property_value: IAO:0000118 "executes" xsd:string +property_value: IAO:0000118 "has" xsd:string +property_value: IAO:0000118 "is catalyzing" xsd:string +property_value: IAO:0000118 "is executing" xsd:string +property_value: IAO:0000232 "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." xsd:string +property_value: IAO:0000232 "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." xsd:string +is_a: RO:0002215 ! capable of +inverse_of: RO:0002333 ! enabled by transitive_over: has_part ! has part -transitive_over: RO:0002017 +transitive_over: RO:0002017 ! has component activity + +[Typedef] +id: RO:0002328 +name: functionally related to +def: "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "This is a grouping relation that collects relations used for the purpose of connecting structure and function" xsd:string [Typedef] id: RO:0002329 +name: part of structure that is capable of +def: "this relation holds between c and p when c is part of some c', and c' is capable of p." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "false" xsd:boolean holds_over_chain: part_of RO:0002215 {http://purl.obolibrary.org/obo/RO_0002581="true"} -is_a: RO:0002328 +is_a: RO:0002328 ! functionally related to [Typedef] id: RO:0002331 +name: involved in +def: "c involved_in p if and only if c enables some process p', and p' is part of p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "actively involved in" xsd:string +property_value: IAO:0000118 "enables part of" xsd:string +property_value: seeAlso Involved:in holds_over_chain: RO:0002327 part_of -is_a: RO:0002217 -is_a: RO:0002431 -transitive_over: part_of ! part of +is_a: RO:0002217 ! actively participates in +is_a: RO:0002431 ! involved in or involved in regulation of +transitive_over: part_of ! part_of [Typedef] id: RO:0002333 +name: enabled by +def: "inverse of enables" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: RO:0000057 ! has participant -is_a: RO:0002328 +is_a: RO:0002328 ! functionally related to [Typedef] id: RO:0002334 +name: regulated by +def: "inverse of regulates" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000589 "regulated by (processual)" xsd:string domain: BFO:0000015 ! process range: BFO:0000015 ! process is_transitive: true -is_a: RO:0002427 +is_a: RO:0002427 ! causally downstream of or within [Typedef] id: RO:0002335 -is_a: RO:0002334 +name: negatively regulated by +def: "inverse of negatively regulates" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002334 ! regulated by [Typedef] id: RO:0002336 -is_a: RO:0002334 +name: positively regulated by +def: "inverse of positively regulates" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002334 ! regulated by [Typedef] id: RO:0002352 +name: input of +def: "inverse of has input" [] +subset: ro-eco +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: RO:0000056 ! participates in -is_a: RO:0002328 +is_a: RO:0002328 ! functionally related to + +[Typedef] +id: RO:0002384 +name: has developmental potential involving +def: "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction)." [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +domain: CARO:0000000 ! anatomical entity +range: CARO:0000000 ! anatomical entity +is_a: RO:0002324 ! developmentally related to + +[Typedef] +id: RO:0002385 +name: has potential to developmentally contribute to +def: "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002384 ! has developmental potential involving + +[Typedef] +id: RO:0002387 +name: has potential to develop into +def: "x has the potential to develop into y iff x develops into y or if x is capable of developing into y" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002384 ! has developmental potential involving + +[Typedef] +id: RO:0002388 +name: has potential to directly develop into +def: "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002387 ! has potential to develop into [Typedef] id: RO:0002404 +name: causally downstream of +def: "inverse of upstream of" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: BFO:0000062 ! preceded by -is_a: RO:0002427 -inverse_of: RO:0002411 +is_a: RO:0002427 ! causally downstream of or within +inverse_of: RO:0002411 ! causally upstream of [Typedef] id: RO:0002405 +name: immediately causally downstream of +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: RO:0002087 ! immediately preceded by -is_a: RO:0002404 -inverse_of: RO:0002412 +is_a: RO:0002404 ! causally downstream of +inverse_of: RO:0002412 ! immediately causally upstream of + +[Typedef] +id: RO:0002410 +name: causally related to +def: "This relation groups causal relations between material entities and causal relations between processes" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000116 "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string [Typedef] id: RO:0002411 +name: causally upstream of +def: "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string is_transitive: true is_a: BFO:0000063 ! precedes -is_a: RO:0002418 +is_a: RO:0002418 ! causally upstream of or within [Typedef] id: RO:0002412 +name: immediately causally upstream of +def: "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q." [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: RO:0002575 RO:0002411 is_a: RO:0002090 ! immediately precedes -is_a: RO:0002411 +is_a: RO:0002411 ! causally upstream of [Typedef] id: RO:0002418 +name: causally upstream of or within +def: "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q." [] +synonym: "affects" RELATED [] +property_value: IAO:0000116 "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "influences (processual)" xsd:string is_transitive: true -is_a: RO:0002501 -inverse_of: RO:0002427 +is_a: RO:0002501 ! causal relation between processes +inverse_of: RO:0002427 ! causally downstream of or within [Typedef] id: RO:0002427 +name: causally downstream of or within +def: "inverse of causally upstream of or within" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations is_transitive: true -is_a: RO:0002501 +is_a: RO:0002501 ! causal relation between processes [Typedef] id: RO:0002428 -holds_over_chain: RO:0002327 RO:0002211 -holds_over_chain: RO:0002331 RO:0002211 -is_a: RO:0002263 -is_a: RO:0002431 +name: involved in regulation of +def: "c involved in regulation of p if c is involved in some p' and p' regulates some p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +holds_over_chain: RO:0002327 regulates +holds_over_chain: RO:0002331 regulates +is_a: RO:0002263 ! acts upstream of +is_a: RO:0002431 ! involved in or involved in regulation of [Typedef] id: RO:0002429 -holds_over_chain: RO:0002327 RO:0002213 -holds_over_chain: RO:0002331 RO:0002213 -is_a: RO:0002428 +name: involved in positive regulation of +def: "c involved in regulation of p if c is involved in some p' and p' positively regulates some p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: RO:0004049 RO:0002428 +holds_over_chain: RO:0002327 positively_regulates +holds_over_chain: RO:0002331 positively_regulates +is_a: RO:0002428 ! involved in regulation of [Typedef] id: RO:0002430 -holds_over_chain: RO:0002327 RO:0002212 -holds_over_chain: RO:0002331 RO:0002212 -is_a: RO:0002428 +name: involved in negative regulation of +def: "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: RO:0004050 RO:0002428 +holds_over_chain: RO:0002327 negatively_regulates +holds_over_chain: RO:0002331 negatively_regulates +is_a: RO:0002428 ! involved in regulation of [Typedef] id: RO:0002431 -is_a: RO:0002264 -is_a: RO:0002328 -is_a: RO:0002500 +name: involved in or involved in regulation of +def: "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" [] +property_value: IAO:0000116 "OWL does not allow defining object properties via a Union" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "involved in or reguates" xsd:string +is_a: RO:0002264 ! acts upstream of or within +is_a: RO:0002328 ! functionally related to +is_a: RO:0002500 ! causal agent in process [Typedef] id: RO:0002432 -holds_over_chain: RO:0002327 BFO:0000066 {http://purl.obolibrary.org/obo/RO_0002581="true"} -is_a: RO:0002131 -is_a: RO:0002328 +name: is active in +def: "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure." [GOC:cjm, GOC:dos] +synonym: "enables activity in" EXACT [] +property_value: IAO:0000112 "A protein that enables activity in a cytosol." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "executes activity in" xsd:string +holds_over_chain: RO:0002327 occurs_in {http://purl.obolibrary.org/obo/RO_0002581="true"} +is_a: RO:0002131 ! overlaps +is_a: RO:0002328 ! functionally related to [Typedef] id: RO:0002434 +name: interacts with +def: "A relationship that holds between two entities in which the processes executed by the two entities are causally connected." [] +subset: ro-eco +synonym: "in pairwise interaction with" EXACT [] +property_value: http://xmlns.com/foaf/0.1/page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI +property_value: IAO:0000116 "Considering relabeling as 'pairwise interacts with'" xsd:anyURI +property_value: IAO:0000116 "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." xsd:string +property_value: seeAlso http://purl.obolibrary.org/obo/MI_0914 xsd:anyURI domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_symmetric: true [Typedef] id: RO:0002436 +name: molecularly interacts with +def: "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "binds" xsd:string +property_value: IAO:0000118 "molecularly binds with" xsd:string +property_value: seeAlso ECO:0000353 +property_value: seeAlso http://purl.obolibrary.org/obo/MI_0915 xsd:anyURI is_symmetric: true -is_a: RO:0002434 +is_a: RO:0002434 ! interacts with [Typedef] id: RO:0002447 -is_a: RO:0002436 +name: phosphorylates +property_value: IAO:0000116 "Axiomatization to GO to be added later" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." xsd:string +is_a: RO:0002436 ! molecularly interacts with [Typedef] id: RO:0002448 -is_a: RO:0002436 -is_a: RO:0002566 +name: activity directly regulates activity of +def: "Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B." [] +synonym: "molecularly controls" EXACT [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002436 ! molecularly interacts with +is_a: RO:0002566 ! causally influences [Typedef] id: RO:0002449 -is_a: RO:0002448 +name: activity directly negatively regulates activity of +def: "Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B." [] +synonym: "molecularly decreases activity of" EXACT [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "inhibits" xsd:string +is_a: RO:0002448 ! activity directly regulates activity of [Typedef] id: RO:0002450 -is_a: RO:0002448 +name: activity directly positively regulates activity of +def: "Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B." [] +synonym: "molecularly increases activity of" EXACT [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "activates" xsd:string +is_a: RO:0002448 ! activity directly regulates activity of + +[Typedef] +id: RO:0002464 +name: helper property (not for use in curation) +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." xsd:string + +[Typedef] +id: RO:0002473 +name: composed primarily of +def: "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y." [] +subset: ro-eco +property_value: IAO:0000112 "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/22293552 +property_value: RO:0001900 RO:0001901 +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity +is_a: has_part ! has part [Typedef] id: RO:0002479 +name: has part that occurs in +def: "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c." [] +subset: ro-eco +property_value: IAO:0000117 "Chris Mungall" xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000004 ! independent continuant -holds_over_chain: has_part BFO:0000066 {http://purl.obolibrary.org/obo/RO_0002581="true"} +holds_over_chain: has_part occurs_in {http://purl.obolibrary.org/obo/RO_0002581="true"} [Typedef] id: RO:0002481 -is_a: RO:0002564 +name: is kinase activity +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002564 ! molecular interaction relation helper property [Typedef] id: RO:0002500 -is_a: RO:0002595 -inverse_of: RO:0002608 +name: causal agent in process +def: "A relationship between a material entity and a process where the material entity has some causal role that influences the process" [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +is_a: RO:0002595 ! causal relation between material entity and a process +inverse_of: RO:0002608 ! process has causal agent [Typedef] id: RO:0002501 +name: causal relation between processes +def: "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent -is_a: RO:0002410 +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0002502 +name: depends on +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: seeAlso BFO:0000169 [Typedef] id: RO:0002506 +name: causal relation between material entities +property_value: IAO:0000116 "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity -is_a: RO:0002410 +is_a: RO:0002410 ! causally related to [Typedef] id: RO:0002559 -is_a: RO:0002506 -inverse_of: RO:0002566 +name: causally influenced by +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "causally influenced by (material entity to material entity)" xsd:string +is_a: RO:0002506 ! causal relation between material entities +inverse_of: RO:0002566 ! causally influences [Typedef] id: RO:0002563 -is_a: RO:0002464 +name: interaction relation helper property +property_value: http://xmlns.com/foaf/0.1/page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29 +is_a: RO:0002464 ! helper property (not for use in curation) [Typedef] id: RO:0002564 -is_a: RO:0002563 +name: molecular interaction relation helper property +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002563 ! interaction relation helper property [Typedef] id: RO:0002566 -is_a: RO:0002506 +name: causally influences +def: "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "causally influences (material entity to material entity)" xsd:string +is_a: RO:0002506 ! causal relation between material entities [Typedef] id: RO:0002578 -is_a: RO:0002211 -is_a: RO:0002412 +name: directly regulates +def: "Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "directly regulates (processual)" xsd:string +property_value: RO:0002575 RO:0002211 +is_a: regulates ! regulates +is_a: RO:0002412 ! immediately causally upstream of [Typedef] id: RO:0002584 +name: has part structure that is capable of +def: "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p" [] +property_value: IAO:0000112 "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string holds_over_chain: has_part RO:0002215 -is_a: RO:0002328 -is_a: RO:0002595 +is_a: RO:0002328 ! functionally related to +is_a: RO:0002595 ! causal relation between material entity and a process [Typedef] id: RO:0002595 +name: causal relation between material entity and a process +def: "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity." [] +property_value: IAO:0000116 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations domain: BFO:0000040 ! material entity range: BFO:0000015 ! process -is_a: RO:0002410 +is_a: RO:0002410 ! causally related to [Typedef] id: RO:0002596 -holds_over_chain: RO:0002215 RO:0002211 -is_a: RO:0002500 +name: capable of regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a regulates p." [] +property_value: IAO:0000112 "pyrethroid -> growth" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +holds_over_chain: RO:0002215 regulates +is_a: RO:0002500 ! causal agent in process [Typedef] id: RO:0002597 -holds_over_chain: RO:0002215 RO:0002212 -is_a: RO:0002596 +name: capable of negatively regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +holds_over_chain: RO:0002215 negatively_regulates +is_a: RO:0002596 ! capable of regulating [Typedef] id: RO:0002598 -holds_over_chain: RO:0002215 RO:0002213 -is_a: RO:0002596 +name: capable of positively regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p." [] +property_value: IAO:0000112 "renin -> arteriolar smooth muscle contraction" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +holds_over_chain: RO:0002215 positively_regulates +is_a: RO:0002596 ! capable of regulating [Typedef] id: RO:0002608 -is_a: RO:0002410 +name: process has causal agent +def: "Inverse of 'causal agent in process'" [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +is_a: RO:0002410 ! causally related to [Typedef] id: RO:0002629 -is_a: RO:0002213 -is_a: RO:0002578 +name: directly positively regulates +def: "Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "directly positively regulates (process to process)" xsd:string +property_value: RO:0004049 RO:0002578 +is_a: positively_regulates ! positively regulates +is_a: RO:0002578 ! directly regulates [Typedef] id: RO:0002630 -is_a: RO:0002212 -is_a: RO:0002578 +name: directly negatively regulates +def: "Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "directly negatively regulates (process to process)" xsd:string +property_value: RO:0004050 RO:0002578 +is_a: negatively_regulates ! negatively regulates +is_a: RO:0002578 ! directly regulates [Typedef] id: RO:0004031 +name: enables subfunction +def: "Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P." [] holds_over_chain: RO:0002327 has_part -is_a: RO:0002328 +is_a: RO:0002328 ! functionally related to +created_by: cjm +creation_date: 2018-01-25T23:20:13Z [Typedef] id: RO:0004032 +name: acts upstream of or within, positive effect +property_value: RO:0004049 RO:0002264 +property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within,_positive_effect holds_over_chain: RO:0002327 RO:0004047 -is_a: RO:0002264 +is_a: RO:0002264 ! acts upstream of or within +created_by: cjm +creation_date: 2018-01-26T23:49:30Z [Typedef] id: RO:0004033 +name: acts upstream of or within, negative effect +property_value: RO:0004050 RO:0002264 holds_over_chain: RO:0002327 RO:0004046 -is_a: RO:0002264 +is_a: RO:0002264 ! acts upstream of or within +created_by: cjm +creation_date: 2018-01-26T23:49:51Z [Typedef] id: RO:0004034 +name: acts upstream of, positive effect +def: "c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive" [] +property_value: RO:0004049 RO:0002263 +property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of,_positive_effect holds_over_chain: RO:0002327 RO:0002304 -is_a: RO:0002263 -is_a: RO:0004032 +is_a: RO:0002263 ! acts upstream of +is_a: RO:0004032 ! acts upstream of or within, positive effect +created_by: cjm +creation_date: 2018-01-26T23:53:14Z [Typedef] id: RO:0004035 +name: acts upstream of, negative effect +def: "c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative" [] +property_value: RO:0004050 RO:0002263 +property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of,_negative_effect holds_over_chain: RO:0002327 RO:0002305 -is_a: RO:0002263 -is_a: RO:0004033 +is_a: RO:0002263 ! acts upstream of +is_a: RO:0004033 ! acts upstream of or within, negative effect +created_by: cjm +creation_date: 2018-01-26T23:53:22Z [Typedef] id: RO:0004046 -is_a: RO:0002418 +name: causally upstream of or within, negative effect +property_value: RO:0004050 RO:0002418 +is_a: RO:0002418 ! causally upstream of or within +created_by: cjm +creation_date: 2018-03-13T23:55:05Z [Typedef] id: RO:0004047 -is_a: RO:0002418 +name: causally upstream of or within, positive effect +property_value: RO:0004049 RO:0002418 +is_a: RO:0002418 ! causally upstream of or within +created_by: cjm +creation_date: 2018-03-13T23:55:19Z [Typedef] id: correlates_with @@ -22421,6 +24543,7 @@ is_a: has_ratio_quality ! has_ratio_quality id: has_part name: has part name: has_part +namespace: external def: "a core relation that holds between a whole and its part" [] def: "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2." [PATOC:CJM] comment: We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. @@ -22435,7 +24558,7 @@ property_value: IAO:0000116 "Parthood requires the part and the whole to have co property_value: IAO:0000118 "has_part" xsd:string property_value: RO:0001900 RO:0001901 is_transitive: true -is_a: RO:0002131 +is_a: RO:0002131 ! overlaps [Typedef] id: has_ratio_quality @@ -22480,7 +24603,10 @@ namespace: pato.ontology [Typedef] id: is_opposite_of name: is opposite of +def: "x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x)." [] xref: RO:0002604 +property_value: IAO:0000112 "'anterior end of organism' is-opposite-of 'posterior end of organism'" xsd:string +property_value: IAO:0000112 "'increase in temperature' is-opposite-of 'decrease in temperature'" xsd:string is_metadata_tag: true is_class_level: true @@ -22489,10 +24615,43 @@ id: is_unit_of name: is_unit_of namespace: pato.ontology +[Typedef] +id: negatively_regulates +name: negatively regulates +namespace: external +def: "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2." [] +xref: RO:0002212 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "negatively regulates (process to process)" xsd:string +property_value: RO:0004050 RO:0002211 +is_a: regulates ! regulates +is_a: RO:0002305 ! causally upstream of, negative effect +inverse_of: RO:0002335 ! negatively regulated by + +[Typedef] +id: occurs_in +name: occurs in +namespace: external +def: "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" [] +comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant +xref: BFO:0000066 +property_value: IAO:0000111 "occurs in" xsd:string +property_value: IAO:0000118 "occurs_in" xsd:string +property_value: IAO:0000118 "unfolds in" xsd:string +property_value: IAO:0000118 "unfolds_in" xsd:string +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl +domain: BFO:0000003 ! occurrent +range: BFO:0000004 ! independent continuant +holds_over_chain: part_of occurs_in +inverse_of: BFO:0000067 ! contains process +transitive_over: part_of ! part_of + [Typedef] id: part_of name: part of name: part_of +namespace: external def: "a core relation that holds between a part and its whole" [] xref: BFO:0000050 property_value: IAO:0000111 "is part of" xsd:string @@ -22504,11 +24663,36 @@ property_value: IAO:0000116 "Occurrents are not subject to change and so parthoo property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string property_value: IAO:0000118 "part_of" xsd:string property_value: RO:0001900 RO:0001901 +property_value: RO:0040042 BFO:0000002 +property_value: RO:0040042 BFO:0000003 +property_value: RO:0040042 BFO:0000004 +property_value: RO:0040042 BFO:0000017 +property_value: RO:0040042 BFO:0000019 +property_value: RO:0040042 BFO:0000020 +property_value: RO:0040042 BFO:0000031 +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf property_value: seeAlso http://www.obofoundry.org/ro/#OBO_REL:part_of xsd:string is_transitive: true -is_a: RO:0002131 +is_a: RO:0002131 ! overlaps inverse_of: has_part ! has part +[Typedef] +id: positively_regulates +name: positively regulates +namespace: external +def: "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2." [] +xref: RO:0002213 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "positively regulates (process to process)" xsd:string +property_value: RO:0004049 RO:0002211 +holds_over_chain: negatively_regulates negatively_regulates +is_transitive: true +is_a: regulates ! regulates +is_a: RO:0002304 ! causally upstream of, positive effect +inverse_of: RO:0002336 ! positively regulated by + [Typedef] id: realized_by name: realized_by @@ -22519,6 +24703,29 @@ name: reciprocal_of def: "q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e." [PATOC:CJM] comment: There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality. +[Typedef] +id: regulates +name: regulates +namespace: external +def: "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2." [] +xref: RO:0002211 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000117 "David Hill" xsd:string +property_value: IAO:0000117 "Tanya Berardini" xsd:string +property_value: IAO:0000119 "GO" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000232 "Regulation precludes parthood; the regulatory process may not be within the regulated process." xsd:string +property_value: IAO:0000589 "regulates (processual)" xsd:string +property_value: IAO:0000600 "false" xsd:boolean +domain: BFO:0000015 ! process +range: BFO:0000015 ! process +holds_over_chain: RO:0002578 RO:0002578 +is_transitive: true +is_a: RO:0002411 ! causally upstream of +inverse_of: RO:0002334 ! regulated by + [Typedef] id: similar_in_magnitude_relative_to name: similar_in_magnitude_relative_to diff --git a/pato-full.owl b/pato-full.owl index 194d8c5b..dd15b2d5 100644 --- a/pato-full.owl +++ b/pato-full.owl @@ -2,19 +2,23 @@ - + OBO-Edit 2.3.1 07:02:2018 10:27 quality @@ -37,25 +41,34 @@ - + + editor preferred term + - + + + example of usage + - + + has curation status + + + definition definition @@ -63,25 +76,37 @@ - + + + editor note + - + + + term editor + - + + + alternative term + - + + + definition source + @@ -91,15 +116,39 @@ + + + + + + - + + + imported from + + + + + + + - + + + OBO foundry unique label + + + + + + + @@ -113,25 +162,52 @@ - + + An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context. + temporal interpretation + https://github.com/oborel/obo-relations/wiki/ROAndTime + + + + + + + + + + + + + + + - + + If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL + is a defining property chain axiom + - + + If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R. + is a defining property chain axiom where second argument is reflexive + + 'anterior end of organism' is-opposite-of 'posterior end of organism' + 'increase in temperature' is-opposite-of 'decrease in temperature' + x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). RO:0002604 quality is_opposite_of @@ -143,6 +219,136 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -233,6 +439,14 @@ + + + + + + + + @@ -251,6 +465,18 @@ + + + + + + + + + + + + @@ -425,6 +651,12 @@ + + + + + + + + + + + + + + + x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y + Chris Mungall + David Osumi-Sutherland + Melissa Haendel + Terry Meehan + This is the transitive form of the develops from relation + develops from + + + + + + + + + + + + + inverse of develops from + Chris Mungall + David Osumi-Sutherland + Terry Meehan + + develops into @@ -830,6 +1208,23 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2. + We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit + Chris Mungall + David Hill + Tanya Berardini + + GO + Regulation precludes parthood; the regulatory process may not be within the regulated process. + regulates (processual) + false + RO:0002211 + external + regulates + regulates + regulates + regulates @@ -840,6 +1235,17 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2. + Chris Mungall + + negatively regulates (process to process) + + RO:0002212 + external + negatively_regulates + negatively_regulates + negatively regulates + negatively regulates @@ -855,6 +1261,17 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2. + Chris Mungall + + positively regulates (process to process) + + RO:0002213 + external + positively_regulates + positively_regulates + positively regulates + positively regulates @@ -865,6 +1282,17 @@ A continuant cannot have an occurrent as part: use 'participates in'. + mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974) + osteoclast SubClassOf 'capable of' some 'bone resorption' + A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. + Chris Mungall + has function realized in + + + For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)". + RO_0000053 some (RO_0000054 only ?Y) + + capable of @@ -878,6 +1306,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p. + Chris Mungall + has function in + RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y)) + capable of part of + @@ -896,6 +1330,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + x actively participates in y if and only if x participates in y and x realizes some active role + Chris Mungall + agent in + actively participates in @@ -904,6 +1342,15 @@ A continuant cannot have an occurrent as part: use 'participates in'. + 'heart development' has active participant some Shh protein + + x has participant y if and only if x realizes some active role that inheres in y + This may be obsoleted and replaced by the original 'has agent' relation + Chris Mungall + has agent + + obsolete has active participant + true @@ -914,7 +1361,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Chris Mungall + Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends. + https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 + A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. temporally related to @@ -928,6 +1379,68 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p. + Chris Mungall + consumes + + has input + + + + + + + + + + + + + + + + Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong] + + x has developmental contribution from y iff x has some part z such that z develops from y + Chris Mungall + has developmental contribution from + + + + + + + + + + + + + + + inverse of has developmental contribution from + Chris Mungall + + developmentally contributes to + + + + + + + + + + + + + Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p + false + Chris Mungall + In general you should not use this relation to make assertions - use one of the more specific relations below this one + This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from + developmentally preceded by @@ -940,6 +1453,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision. + c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes. + acts upstream of + @@ -952,6 +1469,23 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway. + c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process. + affects + acts upstream of or within + + + + + + + + + + + Inverse of developmentally preceded by + Chris Mungall + developmentally succeeded by @@ -961,6 +1495,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y + causally upstream of, positive effect @@ -970,6 +1508,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y + causally upstream of, negative effect @@ -986,6 +1528,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. + q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w. + Because part_of is transitive, inheres in is a sub-relation of inheres in part of + Chris Mungall + + + inheres in part of + @@ -1001,7 +1550,24 @@ A continuant cannot have an occurrent as part: use 'participates in'. - + + A mereological relationship or a topological relationship + Chris Mungall + Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships + + mereotopologically related to + + + + + + + + A relationship that holds between entities participating in some developmental process (GO:0032502) + Chris Mungall + Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development + developmentally related to + @@ -1018,13 +1584,28 @@ A continuant cannot have an occurrent as part: use 'participates in'. + a particular instances of akt-2 enables some instance of protein kinase activity + Chris Mungall + catalyzes + executes + has + is catalyzing + is executing + This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized. + This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time. + enables - + + A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities. + Chris Mungall + This is a grouping relation that collects relations used for the purpose of connecting structure and function + functionally related to + @@ -1036,6 +1617,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + this relation holds between c and p when c is part of some c', and c' is capable of p. + Chris Mungall + false + part of structure that is capable of @@ -1062,6 +1647,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c involved_in p if and only if c enables some process p', and p' is part of p + Chris Mungall + actively involved in + enables part of + involved in + @@ -1071,6 +1662,9 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of enables + Chris Mungall + enabled by @@ -1082,6 +1676,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of regulates + Chris Mungall + regulated by (processual) + + regulated by @@ -1090,6 +1689,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of negatively regulates + Chris Mungall + + negatively regulated by @@ -1098,6 +1701,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of positively regulates + Chris Mungall + + positively regulated by @@ -1107,6 +1714,61 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of has input + Chris Mungall + + + input of + + + + + + + + + + + + x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction). + Chris Mungall + has developmental potential involving + + + + + + + + + + x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y + Chris Mungall + has potential to developmentally contribute to + + + + + + + + + + x has the potential to develop into y iff x develops into y or if x is capable of developing into y + Chris Mungall + has potential to develop into + + + + + + + + + + x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y + Chris Mungall + has potential to directly develop into @@ -1117,6 +1779,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + inverse of upstream of + Chris Mungall + causally downstream of @@ -1127,13 +1793,37 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + Chris Mungall + immediately causally downstream of - + + + This relation groups causal relations between material entities and causal relations between processes + This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. + +To define causal relations in an activity-flow type network, we make use of 3 primitives: + + * Temporal: how do the intervals of the two occurrents relate? + * Is the causal relation regulatory? + * Is the influence positive or negative + +The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. + +For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. + +For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. + +Each of these 3 primitives can be composed to yield a cross-product of different relation types. + Chris Mungall + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causally related to + @@ -1143,6 +1833,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain + Chris Mungall + causally upstream of @@ -1152,6 +1846,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q. + Chris Mungall + + immediately causally upstream of @@ -1162,6 +1861,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q. + We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2 + Chris Mungall + influences (processual) + affects + causally upstream of or within @@ -1171,6 +1876,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of causally upstream of or within + Chris Mungall + + + causally downstream of or within @@ -1188,6 +1898,9 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c involved in regulation of p if c is involved in some p' and p' regulates some p + Chris Mungall + involved in regulation of @@ -1204,6 +1917,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c involved in regulation of p if c is involved in some p' and p' positively regulates some p + Chris Mungall + + involved in positive regulation of @@ -1220,6 +1937,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c involved in regulation of p if c is involved in some p' and p' negatively regulates some p + Chris Mungall + + involved in negative regulation of @@ -1230,6 +1951,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p + OWL does not allow defining object properties via a Union + Chris Mungall + involved in or reguates + involved in or involved in regulation of @@ -1243,6 +1969,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A protein that enables activity in a cytosol. + c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure. + Chris Mungall + executes activity in + enables activity in + + is active in @@ -1253,6 +1986,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. true + + + + c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure. + GOC:cjm + GOC:dos + @@ -1262,6 +2002,16 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A relationship that holds between two entities in which the processes executed by the two entities are causally connected. + Considering relabeling as 'pairwise interacts with' + This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact. + Chris Mungall + Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules. + in pairwise interaction with + + interacts with + http://purl.obolibrary.org/obo/MI_0914 + https://github.com/oborel/obo-relations/wiki/InteractionRelations @@ -1271,6 +2021,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. + An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other. + Chris Mungall + binds + molecularly binds with + molecularly interacts with + + http://purl.obolibrary.org/obo/MI_0915 @@ -1279,6 +2036,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Axiomatization to GO to be added later + Chris Mungall + An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y. + phosphorylates @@ -1293,6 +2054,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. + Chris Mungall + molecularly controls + activity directly regulates activity of @@ -1306,6 +2071,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B. + Chris Mungall + inhibits + molecularly decreases activity of + activity directly negatively regulates activity of @@ -1319,19 +2089,39 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B. + Chris Mungall + activates + molecularly increases activity of + activity directly positively regulates activity of - + + Chris Mungall + This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning. + helper property (not for use in curation) + - + + + + + 'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate' + x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y. + Chris Mungall + + + + composed primarily of + @@ -1344,6 +2134,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c. + Chris Mungall + + has part that occurs in @@ -1361,6 +2155,8 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Chris Mungall + is kinase activity @@ -1370,6 +2166,9 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A relationship between a material entity and a process where the material entity has some causal role that influences the process + + causal agent in process @@ -1380,13 +2179,22 @@ A continuant cannot have an occurrent as part: use 'participates in'. + p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q. + Chris Mungall + + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causal relation between processes - + + Chris Mungall + depends on + + @@ -1396,6 +2204,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch + Chris Mungall + + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causal relation between material entities @@ -1405,6 +2218,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Chris Mungall + + causally influenced by (material entity to material entity) + causally influenced by @@ -1413,6 +2230,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Chris Mungall + interaction relation helper property + + https://github.com/oborel/obo-relations/wiki/InteractionRelations @@ -1421,6 +2242,8 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Chris Mungall + molecular interaction relation helper property @@ -1439,6 +2262,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b + Chris Mungall + + causally influences (material entity to material entity) + causally influences @@ -1448,6 +2276,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2. + Chris Mungall + + directly regulates (processual) + + directly regulates @@ -1461,6 +2295,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + gland SubClassOf 'has part structure that is capable of' some 'secretion by cell' + s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p + Chris Mungall + has part structure that is capable of @@ -1471,6 +2309,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + Chris Mungall + + causal relation between material entity and a process @@ -1483,6 +2326,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + pyrethroid -> growth + Holds between c and p if and only if c is capable of some activity a, and a regulates p. + + capable of regulating @@ -1495,6 +2342,9 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p. + + capable of negatively regulating @@ -1507,6 +2357,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + renin -> arteriolar smooth muscle contraction + Holds between c and p if and only if c is capable of some activity a, and a positively regulates p. + + capable of positively regulating @@ -1515,6 +2369,9 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Inverse of 'causal agent in process' + + process has causal agent @@ -1524,6 +2381,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2. + + directly positively regulates (process to process) + + directly positively regulates @@ -1533,6 +2395,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2. + + directly negatively regulates (process to process) + + directly negatively regulates @@ -1545,6 +2412,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P. + cjm + 2018-01-25T23:20:13Z + enables subfunction @@ -1557,6 +2428,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + 2018-01-26T23:49:30Z + acts upstream of or within, positive effect + @@ -1569,6 +2445,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + 2018-01-26T23:49:51Z + acts upstream of or within, negative effect @@ -1582,6 +2462,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive + + cjm + 2018-01-26T23:53:14Z + acts upstream of, positive effect + @@ -1595,6 +2481,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative + + cjm + 2018-01-26T23:53:22Z + acts upstream of, negative effect + @@ -1603,6 +2495,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + 2018-03-13T23:55:05Z + causally upstream of or within, negative effect @@ -1611,6 +2507,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + 2018-03-13T23:55:19Z + causally upstream of or within, positive effect @@ -2004,6 +2904,21 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + quality + + + + @@ -2076,7 +2991,7 @@ Association is weaker than correlation or proportionality. These relations may b - organism or virus or viroid + organism or virus or viroid @@ -2085,16 +3000,14 @@ Association is weaker than correlation or proportionality. These relations may b - biological entity + biological entity - - - + @@ -2112,9 +3025,29 @@ Association is weaker than correlation or proportionality. These relations may b + A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process. molecular process - molecular_function + GO:0005554 + molecular function + molecular_function + GO:0003674 + + + + + + + + + Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex. + molecular_function + + + + A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process. + GOC:pdt + @@ -2122,25 +3055,221 @@ Association is weaker than correlation or proportionality. These relations may b - catalytic activity + Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. + Wikipedia:Enzyme + enzyme activity + molecular_function + GO:0003824 + + + + + + + catalytic activity + + + + Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. + GOC:vw + ISBN:0198506732 + + + + + enzyme activity + GOC:dph + GOC:tb + - + + + true + + + + + + + + + Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. + receptor binding + Wikipedia:Ligand_(biochemistry) + receptor ligand + molecular_function + receptor-associated protein activity + GO:0005102 + + + + + + Where appropriate, also consider annotating to 'receptor agonist activity ; GO:0048018'. + signaling receptor binding + + + + + Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. + GOC:bf + GOC:ceb + ISBN:0198506732 + + + + + + + + + The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule. + Wikipedia:Binding_(molecular) + ligand + molecular_function + GO:0005488 + + + + Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children. + binding + + + + + The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule. + GOC:ceb + GOC:mah + ISBN:0198506732 + + + + + + + + + Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). + GO:0001948 + GO:0045308 + MIPS_funcat:16.01 + MIPS_funcat:18.01.07 + Reactome:R-HSA-170835 + Reactome:R-HSA-170846 + protein amino acid binding + glycoprotein binding + molecular_function + GO:0005515 + + + + + + + protein binding + + + + Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). + GOC:go_curators + + + + + Reactome:R-HSA-170835 + An anchoring protein, ZFYVE9 (SARA), recruits SMAD2/3 + + + + + Reactome:R-HSA-170846 + TGFBR2 recruits TGFBR1 + - - cellular_component + A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome). + GO:0008372 + NIF_Subcellular:sao1337158144 + cell or subcellular entity + cellular component + cellular_component + subcellular entity + GO:0005575 + + + + + + + + + Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. + cellular_component + + + + + A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome). + GOC:pdt + NIF_Subcellular:sao1337158144 + + + + + subcellular entity + NIF_Subcellular:nlx_subcell_100315 + + + + + + + + + The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. + Wikipedia:Intracellular + internal to cell + protoplasm + cellular_component + nucleocytoplasm + protoplast + GO:0005622 + + + + + + intracellular + + + + The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. + ISBN:0198506732 + + + + + nucleocytoplasm + GOC:mah + + + + + protoplast + GOC:mah + @@ -2148,8 +3277,23 @@ Association is weaker than correlation or proportionality. These relations may b - cell + The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. + cell and encapsulating structures + NIF_Subcellular:sao1813327414 + Wikipedia:Cell_(biology) + cellular_component + GO:0005623 + + + + cell + + + + The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. + GOC:go_curators + @@ -2157,10 +3301,101 @@ Association is weaker than correlation or proportionality. These relations may b + + A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. + MIPS_funcat:70.10 + NIF_Subcellular:sao1702920020 + Wikipedia:Cell_nucleus + cell nucleus + horsetail nucleus + cellular_component + GO:0005634 + + + + + + + + + + + + nucleus nucleus - nucleus + + + + A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. + GOC:go_curators + + + + + horsetail nucleus + GOC:al + GOC:mah + GOC:vw + PMID:15030757 + + + + + + + + + + + + + + + The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. + GO:0005904 + juxtamembrane + NIF_Subcellular:sao1663586795 + Wikipedia:Cell_membrane + cell membrane + cellular membrane + cytoplasmic membrane + plasmalemma + bacterial inner membrane + inner endospore membrane + plasma membrane lipid bilayer + cellular_component + GO:0005886 + + + + + + + + + + plasma membrane + + + + + The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. + ISBN:0716731363 + + + + + cellular membrane + NIF_Subcellular:sao6433132645 + + + + + plasma membrane lipid bilayer + GOC:mah + @@ -2169,8 +3404,162 @@ Association is weaker than correlation or proportionality. These relations may b - cilium + + + + + + + A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body. + GO:0072372 + FMA:67181 + NIF_Subcellular:sao787716553 + Wikipedia:Cilium + eukaryotic flagellum + microtubule-based flagellum + primary cilium + cellular_component + flagellum + GO:0005929 + + + + Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms. + cilium + + + + + A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body. + GOC:cilia + GOC:curators + GOC:kmv + GOC:vw + ISBN:0198547684 + PMID:16824949 + PMID:17009929 + PMID:20144998 + + + + + + + + + The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4). + phosphorus metabolism + biological_process + GO:0006793 + + phosphorus metabolic process + + + + + The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4). + GOC:ai + + + + + + + + + The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid. + MIPS_funcat:01.04 + phosphate metabolism + biological_process + phosphate metabolic process + GO:0006796 + phosphate-containing compound metabolic process + + + + + The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid. + GOC:ai + + + + + + + + + Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + Wikipedia:Cell_signaling + biological_process + GO:0007154 + + + cell communication + + + + Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. + GO:0023033 + MIPS_funcat:30 + Wikipedia:Signal_transduction + signaling cascade + signalling cascade + biological_process + signaling pathway + signalling pathway + GO:0007165 + + + + + + + Note that signal transduction is defined broadly to include a ligand interacting with a receptor, downstream signaling steps and a response being triggered. A change in form of the signal in every step is not necessary. Note that in many cases the end of this process is regulation of the initiation of transcription. Note that specific transcription factors may be annotated to this term, but core/general transcription machinery such as RNA polymerase should not. + signal transduction + + + + + The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. + GOC:go_curators + GOC:mtg_signaling_feb11 + + + + + signalling pathway + GOC:mah + @@ -2178,133 +3567,4024 @@ Association is weaker than correlation or proportionality. These relations may b - biological_process + A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. + janelomax + 2012-09-19T15:05:24Z + GO:0000004 + GO:0007582 + GO:0044699 + Wikipedia:Biological_process + biological process + physiological process + biological_process + single organism process + single-organism process + GO:0008150 + + + + + + + + + + Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. + biological_process + + + + + A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. + GOC:pdt + + + + + + + + + The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. + janelomax + 2012-10-17T15:46:40Z + GO:0044236 + GO:0044710 + MIPS_funcat:01 + Wikipedia:Metabolism + metabolism + metabolic process resulting in cell growth + metabolism resulting in cell growth + multicellular organism metabolic process + biological_process + single-organism metabolic process + GO:0008152 + + + + + + Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions. + metabolic process + + + + + The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. + GOC:go_curators + ISBN:0198547684 + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GO:0044252 + down regulation of metabolic process + down-regulation of metabolic process + downregulation of metabolic process + negative regulation of metabolism + negative regulation of organismal metabolism + inhibition of metabolic process + inhibition of organismal metabolic process + negative regulation of multicellular organismal metabolic process + biological_process + GO:0009892 + negative regulation of metabolic process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GO:0044253 + positive regulation of metabolism + up regulation of metabolic process + up-regulation of metabolic process + upregulation of metabolic process + activation of metabolic process + positive regulation of multicellular organismal metabolic process + positive regulation of organismal metabolism + stimulation of metabolic process + stimulation of organismal metabolic process + up-regulation of organismal metabolic process + biological_process + GO:0009893 + positive regulation of metabolic process + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of signal transduction. + GO:0035466 + biological_process + regulation of signaling pathway + regulation of signalling pathway + GO:0009966 + regulation of signal transduction + + + + + Any process that modulates the frequency, rate or extent of signal transduction. + GOC:sm + + + + + regulation of signalling pathway + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of signal transduction. + GO:0035468 + up regulation of signal transduction + up-regulation of signal transduction + upregulation of signal transduction + activation of signal transduction + stimulation of signal transduction + biological_process + positive regulation of signaling pathway + positive regulation of signalling pathway + GO:0009967 + positive regulation of signal transduction + + + + + Any process that activates or increases the frequency, rate or extent of signal transduction. + GOC:sm + + + + + positive regulation of signalling pathway + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction. + GO:0035467 + down regulation of signal transduction + down-regulation of signal transduction + downregulation of signal transduction + inhibition of signal transduction + biological_process + negative regulation of signaling pathway + negative regulation of signalling pathway + GO:0009968 + negative regulation of signal transduction + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction. + GOC:sm + + + + + negative regulation of signalling pathway + GOC:mah + + + + + + + + + Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + janelomax + 2012-12-11T16:56:55Z + GO:0008151 + GO:0044763 + GO:0050875 + cell physiology + cellular physiological process + cell growth and/or maintenance + biological_process + single-organism cellular process + GO:0009987 + + cellular process + + + + + Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GOC:go_curators + GOC:isa_complete + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + biological_process + GO:0010562 + positive regulation of phosphorus metabolic process + + + + + Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + GOC:dph + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + biological_process + GO:0010563 + negative regulation of phosphorus metabolic process + + + + + Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + GOC:dph + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + biological_process + GO:0010646 + regulation of cell communication + + + + + Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + GOC:dph + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + biological_process + GO:0010647 + positive regulation of cell communication + + + + + Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + GOC:dph + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + biological_process + GO:0010648 + negative regulation of cell communication + + + + + Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + GOC:dph + GOC:tb + + + + + + + + + A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. + Wikipedia:Biological_membrane + cellular_component + GO:0016020 + + + + + + + + + membrane + + + + + A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. + GOC:dos + GOC:mah + ISBN:0815316194 + + + + + + + + + + + + + + + + + + true + + + Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + Reactome:R-HSA-6788855 + Reactome:R-HSA-6788867 + phosphokinase activity + molecular_function + GO:0016301 + + + + + + Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term. + kinase activity + + + + + Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + ISBN:0198506732 + + + + + Reactome:R-HSA-6788855 + FN3KRP phosphorylates PsiAm, RibAm + + + + + Reactome:R-HSA-6788867 + FN3K phosphorylates ketosamines + + + + + + + + + The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. + Wikipedia:Phosphorylation + biological_process + GO:0016310 + + + phosphorylation + + + + + The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. + ISBN:0198506732 + + + + + + + + + Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. + EC:2 + Reactome:R-HSA-1483089 + Reactome:R-HSA-1483186 + Reactome:R-HSA-5668414 + Reactome:R-HSA-6787403 + Reactome:R-HSA-8868783 + molecular_function + GO:0016740 + + + + + + + + + transferase activity + + + + + Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. + ISBN:0198506732 + + + + + Reactome:R-HSA-1483089 + PE is converted to PS by PTDSS2 + + + + + Reactome:R-HSA-1483186 + PC is converted to PS by PTDSS1 + + + + + Reactome:R-HSA-5668414 + TRAF2 ubiquitinates cIAP1,2 in cIAP1,2:TRAF1:TRAF2:TRAF3:NIK + + + + + Reactome:R-HSA-6787403 + GTPBP3 and MTO1 transform uridine-34 yielding 5-taurinomethyluridine-34 in tRNA + + + + + Reactome:R-HSA-8868783 + TSR3 transfers aminocarboxypropyl group from S-adenosylmethionine to N(1)-methylpseudouridine-1248 of 18SE rRNA yielding N(1)-methyl-N(3)-aminocarboxypropylpseudouridine-1248 + + + + + + + + + Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). + EC:2.7 + molecular_function + GO:0016772 + + Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides. + transferase activity, transferring phosphorus-containing groups + + + + + Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). + GOC:jl + ISBN:0198506732 + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + regulation of phosphate metabolism + biological_process + GO:0019220 + regulation of phosphate metabolic process + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GO:0044246 + regulation of metabolism + regulation of multicellular organismal metabolic process + regulation of organismal metabolic process + biological_process + GO:0019222 + + regulation of metabolic process + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GOC:go_curators + + + + + regulation of organismal metabolic process + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a signaling process. + 2010-02-16T09:30:50Z + biological_process + regulation of signaling process + regulation of signalling process + GO:0023051 + regulation of signaling + + + + + Any process that modulates the frequency, rate or extent of a signaling process. + GOC:mtg_signal + + + + + regulation of signaling process + GOC:bf + + + + + regulation of signalling process + GOC:mah + + + + + + + + + The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered. + janelomax + 2010-02-16T09:30:50Z + GO:0023046 + GO:0044700 + biological signaling + signaling process + signalling + biological_process + signalling process + single organism signaling + GO:0023052 + + + + + + Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change. + signaling + + + + + The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered. + GOC:mtg_signal + GOC:mtg_signaling_feb11 + GOC:signaling + + + + + signalling process + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates, maintains or increases the frequency, rate or extent of a signaling process. + 2010-02-16T09:30:50Z + positive regulation of signalling process + biological_process + positive regulation of signaling process + GO:0023056 + positive regulation of signaling + + + + + Any process that activates, maintains or increases the frequency, rate or extent of a signaling process. + GOC:mtg_signal + + + + + positive regulation of signalling process + GOC:mah + + + + + positive regulation of signaling process + GOC:bf + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process. + 2010-02-16T09:30:50Z + biological_process + negative regulation of signaling process + negative regulation of signalling process + GO:0023057 + negative regulation of signaling + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process. + GOC:mtg_signal + + + + + negative regulation of signaling process + GOC:bf + + + + + negative regulation of signalling process + GOC:mah + + + + + + + + + The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed. + MIPS_funcat:18.02.07 + molecular_function + GO:0030545 + receptor regulator activity + + + + + The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed. + GOC:ceb + + + + + + + + + The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased. + receptor activator activity + molecular_function + GO:0030546 + signaling receptor activator activity + + + + + The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased. + GOC:ceb + + + + + + + + + A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules. + intraflagellar transport complex + intraflagellar transport particle + cellular_component + IFT complex + GO:0030990 + + Note that we deem cilia and microtubule-based flagella to be equivalent. + intraciliary transport particle + + + + + A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules. + GOC:cilia + GOC:kmv + PMID:14570576 + PMID:22118932 + PMID:23945166 + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + regulation of cellular metabolism + biological_process + GO:0031323 + regulation of cellular metabolic process + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + down regulation of cellular metabolic process + down-regulation of cellular metabolic process + downregulation of cellular metabolic process + negative regulation of cellular metabolism + inhibition of cellular metabolic process + biological_process + GO:0031324 + negative regulation of cellular metabolic process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + positive regulation of cellular metabolism + up regulation of cellular metabolic process + up-regulation of cellular metabolic process + upregulation of cellular metabolic process + activation of cellular metabolic process + stimulation of cellular metabolic process + biological_process + GO:0031325 + positive regulation of cellular metabolic process + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding. + down regulation of protein binding + down-regulation of protein binding + downregulation of protein binding + inhibition of protein binding + biological_process + GO:0032091 + negative regulation of protein binding + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of protein binding. + up regulation of protein binding + up-regulation of protein binding + upregulation of protein binding + activation of protein binding + stimulation of protein binding + biological_process + GO:0032092 + positive regulation of protein binding + + + + + Any process that activates or increases the frequency, rate or extent of protein binding. + GOC:mah + + + + + + + + + A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together. + GO:0043234 + macromolecular complex + macromolecule complex + protein containing complex + protein complex + protein-protein complex + cellular_component + GO:0032991 + + + + + + A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole. + protein-containing complex + + + + + A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together. + GOC:dos + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + down regulation of kinase activity + down-regulation of kinase activity + downregulation of kinase activity + inhibition of kinase activity + kinase inhibitor + biological_process + GO:0033673 + negative regulation of kinase activity + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + up regulation of kinase activity + up-regulation of kinase activity + upregulation of kinase activity + kinase activator + stimulation of kinase activity + biological_process + GO:0033674 + positive regulation of kinase activity + + + + + Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. + rfoulger + 2010-05-14T01:14:37Z + GO:0007242 + GO:0007243 + GO:0023013 + GO:0023034 + intracellular signaling chain + intracellular protein kinase cascade + intracellular signal transduction pathway + protein kinase cascade + signal transmission via intracellular cascade + biological_process + intracellular signaling cascade + intracellular signaling pathway + signal transduction via intracellular signaling cascade + GO:0035556 + intracellular signal transduction + + + + + The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. + GOC:bf + GOC:jl + GOC:signaling + ISBN:3527303782 + + + + + intracellular signaling chain + ISBN:3527303782 + + + + + intracellular protein kinase cascade + GOC:signaling + + + + + protein kinase cascade + GOC:signaling + + + + + intracellular signaling cascade + GOC:signaling + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule. + biological_process + GO:0042325 + regulation of phosphorylation + + + + + Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule. + GOC:jl + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule. + down regulation of phosphorylation + down-regulation of phosphorylation + downregulation of phosphorylation + inhibition of phosphorylation + biological_process + GO:0042326 + negative regulation of phosphorylation + + + + + Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule. + GOC:jl + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule. + up regulation of phosphorylation + up-regulation of phosphorylation + upregulation of phosphorylation + activation of phosphorylation + stimulation of phosphorylation + biological_process + GO:0042327 + positive regulation of phosphorylation + + + + + Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule. + GOC:jl + + + + + + + + + + A prolongation or process extending from a cell, e.g. a flagellum or axon. + + cell process + cellular process + cellular projection + cellular_component + GO:0042995 + + + + + cell projection + cell projection + + + + + A prolongation or process extending from a cell, e.g. a flagellum or axon. + GOC:jl + http://www.cogsci.princeton.edu/~wn/ + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the activity of an enzyme. + GO:0048554 + MIPS_funcat:18.02.01.01 + positive regulation of enzyme activity + up regulation of enzyme activity + up-regulation of enzyme activity + upregulation of enzyme activity + activation of enzyme activity + activation of metalloenzyme activity + positive regulation of metalloenzyme activity + stimulation of enzyme activity + stimulation of metalloenzyme activity + up regulation of metalloenzyme activity + up-regulation of metalloenzyme activity + upregulation of metalloenzyme activity + biological_process + GO:0043085 + + positive regulation of catalytic activity + + + + + Any process that activates or increases the activity of an enzyme. + GOC:ebc + GOC:jl + GOC:tb + GOC:vw + + + + + positive regulation of enzyme activity + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops or reduces the activity of an enzyme. + GO:0048553 + down regulation of enzyme activity + down-regulation of enzyme activity + down-regulation of metalloenzyme activity + downregulation of enzyme activity + negative regulation of enzyme activity + down regulation of metalloenzyme activity + downregulation of metalloenzyme activity + inhibition of enzyme activity + inhibition of metalloenzyme activity + negative regulation of metalloenzyme activity + biological_process + GO:0043086 + negative regulation of catalytic activity + + + + + Any process that stops or reduces the activity of an enzyme. + GOC:ebc + GOC:jl + GOC:tb + GOC:vw + + + + + negative regulation of enzyme activity + GOC:tb + + + + + + + + + Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane. + NIF_Subcellular:sao1539965131 + Wikipedia:Organelle + cellular_component + GO:0043226 + + + + organelle + + + + + Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane. + GOC:go_curators + + + + + + + + + Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. + NIF_Subcellular:sao414196390 + membrane-enclosed organelle + cellular_component + GO:0043227 + membrane-bounded organelle + + + + + Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. + cellular_component + GO:0043229 + + intracellular organelle + + + + + Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. + GOC:go_curators + + + + + + + + + + Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. + intracellular membrane-enclosed organelle + cellular_component + GO:0043231 + + intracellular membrane-bounded organelle + + + + + Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of protein binding. + biological_process + GO:0043393 + regulation of protein binding + + + + + Any process that modulates the frequency, rate or extent of protein binding. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + biological_process + GO:0043549 + regulation of kinase activity + + + + + Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + GOC:bf + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + jane + 2009-04-21T04:07:27Z + biological_process + GO:0044092 + negative regulation of molecular function + + + + + Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + GO:jl + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + jane + 2009-04-21T04:11:06Z + biological_process + GO:0044093 + positive regulation of molecular function + + + + + Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + GO:jl + + + + + + + + + + The chemical reactions and pathways by which individual cells transform chemical substances. + cellular metabolism + biological_process + intermediary metabolism + GO:0044237 + cellular metabolic process + + + + + The chemical reactions and pathways by which individual cells transform chemical substances. + GOC:go_curators + + + + + intermediary metabolism + GOC:mah + + + + + + + + OBSOLETE. Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. + GO:0005622 + cellular_component + GO:0044424 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + obsolete intracellular part + true + + + + + OBSOLETE. Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. + GOC:jl + + + + + + + + + OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms. + + CL:0000000 + NIF_Subcellular:sao628508602 + cellular subcomponent + cellular_component + protoplast + GO:0044464 + + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + cell part + obsolete cell part + true + + + + + OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms. + GOC:jl + + + + + cellular subcomponent + NIF_Subcellular:sao628508602 + + + + + protoplast + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + down regulation of phosphate metabolic process + down-regulation of phosphate metabolic process + downregulation of phosphate metabolic process + negative regulation of phosphate metabolism + inhibition of phosphate metabolic process + biological_process + GO:0045936 + negative regulation of phosphate metabolic process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + positive regulation of phosphate metabolism + up regulation of phosphate metabolic process + up-regulation of phosphate metabolic process + upregulation of phosphate metabolic process + activation of phosphate metabolic process + stimulation of phosphate metabolic process + biological_process + GO:0045937 + positive regulation of phosphate metabolic process + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + GOC:go_curators + + + + + + + + + + + + + + + + The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands). + midori + 2010-09-13T04:51:59Z + GO:0071884 + receptor agonist activity + signaling molecule + signaling receptor ligand activity + vitamin D receptor activator activity + molecular_function + GO:0048018 + + Definition discussed in https://github.com/geneontology/go-ontology/issues/14220 + receptor ligand activity + + + + + The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands). + GOC:kv + GOC:molecular_function_refactoring + GOC:pdt + + + + + receptor agonist activity + GOC:molecular_function_refactoring + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GO:0043119 + positive regulation of physiological process + up regulation of biological process + up-regulation of biological process + upregulation of biological process + activation of biological process + stimulation of biological process + biological_process + GO:0048518 + + positive regulation of biological process + + + + + Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GO:0043118 + down regulation of biological process + down-regulation of biological process + downregulation of biological process + negative regulation of physiological process + inhibition of biological process + biological_process + GO:0048519 + + negative regulation of biological process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GO:0051242 + positive regulation of cellular physiological process + up regulation of cellular process + up-regulation of cellular process + upregulation of cellular process + activation of cellular process + stimulation of cellular process + biological_process + GO:0048522 + positive regulation of cellular process + + + + + Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GO:0051243 + down regulation of cellular process + down-regulation of cellular process + downregulation of cellular process + negative regulation of cellular physiological process + inhibition of cellular process + biological_process + GO:0048523 + negative regulation of cellular process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + biological_process + GO:0048583 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + regulation of response to stimulus + + + + + Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + up regulation of response to stimulus + up-regulation of response to stimulus + upregulation of response to stimulus + activation of response to stimulus + stimulation of response to stimulus + biological_process + GO:0048584 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + positive regulation of response to stimulus + + + + + Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + down regulation of response to stimulus + down-regulation of response to stimulus + downregulation of response to stimulus + inhibition of response to stimulus + biological_process + GO:0048585 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + negative regulation of response to stimulus + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GO:0050791 + regulation of physiological process + biological_process + GO:0050789 + + + + + regulation of biological process + + + + + Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GOC:ai + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the activity of an enzyme. + GO:0048552 + MIPS_funcat:18.02.01 + regulation of enzyme activity + regulation of metalloenzyme activity + biological_process + GO:0050790 + + regulation of catalytic activity + + + + + Any process that modulates the activity of an enzyme. + GOC:ai + GOC:ebc + GOC:vw + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GO:0051244 + regulation of cellular physiological process + biological_process + GO:0050794 + regulation of cellular process + + + + + Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GOC:go_curators + + + + + + + + + Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. + GO:0051869 + MIPS_funcat:34.11 + physiological response to stimulus + biological_process + GO:0050896 + + + + + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + response to stimulus + + + + + Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. + GOC:ai + GOC:bf + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + biological_process + GO:0051098 + regulation of binding + + + + + Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + up regulation of binding + up-regulation of binding + upregulation of binding + activation of binding + stimulation of binding + biological_process + GO:0051099 + positive regulation of binding + + + + + Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + down regulation of binding + down-regulation of binding + downregulation of binding + inhibition of binding + biological_process + GO:0051100 + negative regulation of binding + + + + + Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + regulation of phosphorus metabolism + biological_process + GO:0051174 + regulation of phosphorus metabolic process + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. + transferase regulator + biological_process + GO:0051338 + + This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. + regulation of transferase activity + + + + + Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. + EC:2.-.-.- + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. + transferase activator + up regulation of transferase activity + up-regulation of transferase activity + upregulation of transferase activity + activation of transferase activity + stimulation of transferase activity + biological_process + GO:0051347 + + This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. + positive regulation of transferase activity + + + + + Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. + down regulation of transferase activity + down-regulation of transferase activity + downregulation of transferase activity + transferase inhibitor + inhibition of transferase activity + biological_process + GO:0051348 + + This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. + negative regulation of transferase activity + + + + + Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. + GOC:ai + + + + + + + + + + Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell. + biological_process + GO:0051716 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + cellular response to stimulus + + + + + Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell. + GOC:bf + GOC:jl + + + + + + + + + Any process that modulates a measurable attribute of any biological process, quality or function. + regulation + biological_process + GO:0065007 + + + biological regulation + + + + + Any process that modulates a measurable attribute of any biological process, quality or function. + GOC:dph + GOC:isa_complete + GOC:mah + GOC:pr + GOC:vw + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + regulation of a molecular function + biological_process + GO:0065009 + + + + regulation of molecular function + + + + + Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + GOC:isa_complete + + + + + + + + + The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures. + midori + 2010-10-04T01:51:47Z + cellular_component + GO:0071944 + + cell periphery + + + + + The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures. + GOC:mah + - + - - + + + + + + + + + + + + + - - true + + - kinase activity + A membrane that is a (regional) part of the plasma membrane. + davidos + 2014-03-06T11:55:32Z + region of plasma membrane + cellular_component + GO:0098590 + + Note that this term should not be used for direct manual annotation as it should always be possible to choose a more specific subclass. + plasma membrane region + + + + A membrane that is a (regional) part of the plasma membrane. + GOC:dos + - + - - - transferase activity + + + + + + + + + A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators. + molecular_function + GO:0098772 + + molecular function regulator + + + + A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators. + GOC:dos + GOC:pt + - + - - - transferase activity, transferring phosphorus-containing groups + + + + + + + + + + + + + + + + + + + + Any protein complex that is part of a membrane. + cellular_component + GO:0098796 + + membrane protein complex + + + + Any protein complex that is part of a membrane. + GOC:dos + - + - - - cell projection + + + + + + + + + + + + + + + + + + + + Any protein complex that is part of the plasma membrane. + cellular_component + GO:0098797 + plasma membrane protein complex + + + + Any protein complex that is part of the plasma membrane. + GOC:dos + - + - + - organelle + A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. + kmv + 2019-08-12T18:01:37Z + cellular_component + GO:0110165 + cellular anatomical entity + + + + A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. + GOC:kmv + - + - - - membrane-bounded organelle + + + + + + + + + + + + + + + + + + + + A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon. + kchris + 2017-03-21T17:26:07Z + cellular_component + GO:0120025 + plasma membrane bounded cell projection + + + + A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon. + GOC:krc + - + - - - - intracellular organelle + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor. + bf + 2012-02-22T11:40:53Z + regulation of receptor ligand + biological_process + GO:1900120 + regulation of receptor binding + + + + Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor. + GOC:TermGenie + GOC:signaling + + + + + regulation of receptor ligand + GOC:TermGenie + - + - - - - intracellular membrane-bounded organelle + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor. + bf + 2012-02-22T11:40:57Z + down regulation of receptor binding + down-regulation of receptor binding + downregulation of receptor binding + inhibition of receptor binding + inhibition of receptor ligand + biological_process + down regulation of receptor-associated protein activity + GO:1900121 + negative regulation of receptor binding + + + + Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor. + GOC:TermGenie + GOC:signaling + + + + + down regulation of receptor binding + GOC:TermGenie + + + + + down-regulation of receptor binding + GOC:TermGenie + + + + + downregulation of receptor binding + GOC:TermGenie + + + + + inhibition of receptor binding + GOC:TermGenie + + + + + inhibition of receptor ligand + GOC:TermGenie + + + + + down regulation of receptor-associated protein activity + GOC:TermGenie + - + - - - intracellular part + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor. + bf + 2012-02-22T11:41:00Z + up regulation of receptor binding + upregulation of receptor binding + activation of receptor binding + biological_process + GO:1900122 + positive regulation of receptor binding + + + + Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor. + GOC:TermGenie + GOC:signaling + + + + + up regulation of receptor binding + GOC:TermGenie + + + + + upregulation of receptor binding + GOC:TermGenie + + + + + activation of receptor binding + GOC:TermGenie + - + - - - - - cell part - cell part - + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of intracellular signal transduction. + bf + 2013-12-02T11:32:52Z + GO:0010627 + regulation of intracellular signaling cascade + regulation of intracellular signaling chain + regulation of intracellular protein kinase cascade + regulation of intracellular signal transduction pathway + regulation of signal transmission via intracellular cascade + biological_process + regulation of intracellular signaling pathway + regulation of signal transduction via intracellular signaling cascade + GO:1902531 + regulation of intracellular signal transduction + + + + + Any process that modulates the frequency, rate or extent of intracellular signal transduction. + GOC:TermGenie + GOC:dph + GOC:signaling + GOC:tb + + + + + regulation of intracellular signaling cascade + GOC:TermGenie + + + + + regulation of intracellular signaling chain + GOC:TermGenie + + + + + regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + regulation of intracellular signaling pathway + GOC:TermGenie + + + + + regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + - + - - - + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of intracellular signal transduction. + bf + 2013-12-02T11:33:01Z + GO:0010741 + down regulation of intracellular signal transduction + down regulation of intracellular signaling chain + down-regulation of intracellular signal transduction + down-regulation of intracellular signaling chain + downregulation of intracellular signal transduction + downregulation of intracellular signaling chain + negative regulation of intracellular protein kinase cascade + negative regulation of intracellular signaling cascade + negative regulation of intracellular signaling chain + down regulation of intracellular signal transduction pathway + down regulation of intracellular signaling cascade + down regulation of signal transmission via intracellular cascade + down-regulation of intracellular signal transduction pathway + downregulation of intracellular signal transduction pathway + downregulation of intracellular signaling cascade + downregulation of signal transmission via intracellular cascade + inhibition of intracellular signal transduction + inhibition of intracellular signal transduction pathway + inhibition of intracellular signaling cascade + inhibition of intracellular signaling chain + inhibition of signal transmission via intracellular cascade + negative regulation of intracellular signal transduction pathway + negative regulation of signal transmission via intracellular cascade + biological_process + down regulation of intracellular signaling pathway + down regulation of signal transduction via intracellular signaling cascade + down-regulation of intracellular signaling cascade + down-regulation of intracellular signaling pathway + down-regulation of signal transduction via intracellular signaling cascade + down-regulation of signal transmission via intracellular cascade + downregulation of intracellular signaling pathway + downregulation of signal transduction via intracellular signaling cascade + inhibition of intracellular signaling pathway + inhibition of signal transduction via intracellular signaling cascade + negative regulation of intracellular signaling pathway + negative regulation of signal transduction via intracellular signaling cascade + GO:1902532 + negative regulation of intracellular signal transduction + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of intracellular signal transduction. + GOC:TermGenie + GOC:dph + GOC:signaling + GOC:tb + + + + + down regulation of intracellular signal transduction + GOC:TermGenie + + + + + down regulation of intracellular signaling chain + GOC:TermGenie + + + + + down-regulation of intracellular signal transduction + GOC:TermGenie + + + + + down-regulation of intracellular signaling chain + GOC:TermGenie + + + + + downregulation of intracellular signal transduction + GOC:TermGenie + + + + + downregulation of intracellular signaling chain + GOC:TermGenie + + + + + negative regulation of intracellular signaling cascade + GOC:TermGenie + + + + + negative regulation of intracellular signaling chain + GOC:TermGenie + + + + + down regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + down regulation of intracellular signaling cascade + GOC:TermGenie + + + + + down regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + down-regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + downregulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + downregulation of intracellular signaling cascade + GOC:TermGenie + + + + + downregulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + inhibition of intracellular signal transduction + GOC:TermGenie + + + + + inhibition of intracellular signal transduction pathway + GOC:TermGenie + + + + + inhibition of intracellular signaling cascade + GOC:TermGenie + + + + + inhibition of intracellular signaling chain + GOC:TermGenie + + + + + inhibition of signal transmission via intracellular cascade + GOC:TermGenie + + + + + negative regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + negative regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + down regulation of intracellular signaling pathway + GOC:TermGenie + + + + + down regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + down-regulation of intracellular signaling cascade + GOC:TermGenie + + + + + down-regulation of intracellular signaling pathway + GOC:TermGenie + + + + + down-regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + down-regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + downregulation of intracellular signaling pathway + GOC:TermGenie + + + + + downregulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + inhibition of intracellular signaling pathway + GOC:TermGenie + + + + + inhibition of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + negative regulation of intracellular signaling pathway + GOC:TermGenie + + + + + negative regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + - + - - - plasma membrane bounded cell projection - + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of intracellular signal transduction. + bf + 2013-12-02T11:33:10Z + GO:0010740 + positive regulation of intracellular signaling chain + up regulation of intracellular signal transduction + up regulation of intracellular signaling chain + up-regulation of intracellular signal transduction + up-regulation of intracellular signaling chain + upregulation of intracellular signal transduction + upregulation of intracellular signaling chain + activation of intracellular signal transduction + activation of intracellular signal transduction pathway + activation of intracellular signaling cascade + activation of intracellular signaling chain + activation of signal transmission via intracellular cascade + positive regulation of intracellular protein kinase cascade + positive regulation of intracellular signal transduction pathway + positive regulation of signal transmission via intracellular cascade + up regulation of intracellular signal transduction pathway + up regulation of signal transmission via intracellular cascade + up-regulation of intracellular signal transduction pathway + up-regulation of signal transmission via intracellular cascade + upregulation of intracellular signal transduction pathway + upregulation of signal transmission via intracellular cascade + biological_process + activation of intracellular signaling pathway + activation of signal transduction via intracellular signaling cascade + positive regulation of intracellular signaling cascade + positive regulation of intracellular signaling pathway + positive regulation of signal transduction via intracellular signaling cascade + up regulation of intracellular signaling cascade + up regulation of intracellular signaling pathway + up regulation of signal transduction via intracellular signaling cascade + up-regulation of intracellular signaling cascade + up-regulation of intracellular signaling pathway + up-regulation of signal transduction via intracellular signaling cascade + upregulation of intracellular signaling cascade + upregulation of intracellular signaling pathway + upregulation of signal transduction via intracellular signaling cascade + GO:1902533 + positive regulation of intracellular signal transduction + + + + + Any process that activates or increases the frequency, rate or extent of intracellular signal transduction. + GOC:BHF + GOC:TermGenie + GOC:dph + GOC:signaling + GOC:tb + + + + + positive regulation of intracellular signaling chain + GOC:TermGenie + + + + + up regulation of intracellular signal transduction + GOC:TermGenie + + + + + up regulation of intracellular signaling chain + GOC:TermGenie + + + + + up-regulation of intracellular signal transduction + GOC:TermGenie + + + + + up-regulation of intracellular signaling chain + GOC:TermGenie + + + + + upregulation of intracellular signal transduction + GOC:TermGenie + + + + + upregulation of intracellular signaling chain + GOC:TermGenie + + + + + activation of intracellular signal transduction + GOC:TermGenie + + + + + activation of intracellular signal transduction pathway + GOC:TermGenie + + + + + activation of intracellular signaling cascade + GOC:TermGenie + + + + + activation of intracellular signaling chain + GOC:TermGenie + + + + + activation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + positive regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + positive regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + up regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + up regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + up-regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + up-regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + upregulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + upregulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + activation of intracellular signaling pathway + GOC:TermGenie + + + + + activation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + positive regulation of intracellular signaling cascade + GOC:TermGenie + + + + + positive regulation of intracellular signaling pathway + GOC:TermGenie + + + + + positive regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + up regulation of intracellular signaling cascade + GOC:TermGenie + + + + + up regulation of intracellular signaling pathway + GOC:TermGenie + + + + + up regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + up-regulation of intracellular signaling cascade + GOC:TermGenie + + + + + up-regulation of intracellular signaling pathway + GOC:TermGenie + + + + + up-regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + upregulation of intracellular signaling cascade + GOC:TermGenie + + + + + upregulation of intracellular signaling pathway + GOC:TermGenie + + + + + upregulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + - quality PATO:0000000 obsolete pato @@ -2316,8 +7596,9 @@ Association is weaker than correlation or proportionality. These relations may b - + A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities + quality (PATO) PATO:0000072 quality PATO:0000001 @@ -2335,7 +7616,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000002 obsolete value @@ -2347,7 +7627,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000003 obsolete assay @@ -2381,7 +7660,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000005 obsolete absolute activity @@ -2393,7 +7671,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000006 obsolete process @@ -2405,7 +7682,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000007 obsolete relative activity @@ -2438,7 +7714,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000009 obsolete absolute speed @@ -2450,7 +7725,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000010 obsolete relative speed @@ -2482,7 +7756,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000012 obsolete absolute age @@ -2494,7 +7767,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000013 obsolete relative age @@ -2629,7 +7901,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -2662,7 +7933,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000022 obsolete gametophytic compatability @@ -2674,7 +7944,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000023 obsolete relative compatability @@ -2686,7 +7955,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000024 obsolete sporophytic compatability @@ -2724,7 +7992,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000026 obsolete carbohydrate composition @@ -2736,7 +8003,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000027 obsolete electrolyte composition @@ -2748,7 +8014,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000028 obsolete macromolecular composition @@ -2760,7 +8025,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000029 obsolete protein composition @@ -2772,7 +8036,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000030 obsolete enzyme composition @@ -2784,7 +8047,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000031 obsolete metabolite composition @@ -2796,7 +8058,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000032 obsolete secondary product composition @@ -2830,7 +8091,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000034 obsolete protein concentration @@ -2842,7 +8102,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000035 obsolete carbohydrate concentration @@ -2854,7 +8113,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000036 obsolete water content @@ -2887,7 +8145,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000038 obsolete gel consistency @@ -2940,7 +8197,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000041 obsolete absolutedistance @@ -2952,7 +8208,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000042 obsolete relative distance @@ -3004,7 +8259,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000045 obsolete absolute frequency @@ -3016,7 +8270,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000046 obsolete relative frequency @@ -3108,6 +8361,7 @@ Association is weaker than correlation or proportionality. These relations may b + A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. quality @@ -3149,7 +8403,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -3160,7 +8413,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000054 obsolete absolute number @@ -3172,7 +8424,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000055 obsolete relative number @@ -3248,7 +8499,6 @@ Association is weaker than correlation or proportionality. These relations may b - A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a parent. parental type quality @@ -3293,7 +8543,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000061 obsolete relative pattern @@ -3324,7 +8573,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000063 obsolete percentage @@ -3336,7 +8584,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000064 obsolete absolute percentage @@ -3348,7 +8595,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000065 obsolete relative percentage @@ -3380,7 +8626,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000067 obsolete relative pilosity @@ -3458,7 +8703,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -3469,7 +8713,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -3480,7 +8723,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000073 obsolete relative_quality @@ -3492,7 +8734,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000074 obsolete shattering @@ -3504,7 +8745,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000075 obsolete threshability @@ -3516,7 +8756,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000076 obsolete regulation @@ -3578,7 +8817,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000079 obsolete absolute rhythym @@ -3609,7 +8847,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -3658,7 +8895,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000084 obsolete relative rhythym @@ -3692,7 +8928,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000086 obsolete absolute sensitivity @@ -3704,7 +8939,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000087 obsolete disease sensitivity @@ -3716,7 +8950,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000088 obsolete absolute disease sensitivity @@ -3728,7 +8961,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000089 obsolete relative disease sensitivity @@ -3740,7 +8972,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000090 obsolete relative sensitivity @@ -3752,7 +8983,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000091 obsolete stress sensitivity @@ -3764,7 +8994,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000092 obsolete abiotic stress sensitivity @@ -3776,7 +9005,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000093 obsolete chemical sensitivity @@ -3788,7 +9016,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000094 obsolete drug sensitivity @@ -3800,7 +9027,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000095 obsolete absolute drug sensitivity @@ -3812,7 +9038,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000096 obsolete relative drug sensitivity @@ -3824,7 +9049,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000097 obsolete herbicide sensitivity @@ -3836,7 +9060,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000098 obsolete insecticide sensitivity @@ -3848,7 +9071,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000099 obsolete plant growth hormone sensitivity @@ -3860,7 +9082,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000100 obsolete soil composition sensitivity @@ -3872,7 +9093,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000101 obsolete soil nutrient sensitivity @@ -3884,7 +9104,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000102 obsolete macronutrient sensitivity @@ -3896,7 +9115,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000103 obsolete micronutrient sensitivity @@ -3908,7 +9126,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000104 obsolete osmotic response sensitivity @@ -3920,7 +9137,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000105 obsolete p h sensitivity @@ -3932,7 +9148,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000106 obsolete acid sensitivity @@ -3944,7 +9159,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000107 obsolete alkali sensitivity @@ -3956,7 +9170,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000108 obsolete salt sensitivity @@ -3968,7 +9181,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000109 obsolete water sensitivity @@ -3980,7 +9192,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000110 obsolete drought sensitivity @@ -3992,7 +9203,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000111 obsolete flooding sensitivity @@ -4004,7 +9214,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000112 obsolete humidity sensitivity @@ -4016,7 +9225,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000113 obsolete radiation sensitivity @@ -4028,7 +9236,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000114 obsolete temperature sensitivity @@ -4040,7 +9247,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000115 obsolete absolute temperature sensitivity @@ -4052,7 +9258,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000116 obsolete relative temperature sensitivity @@ -4084,7 +9289,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000118 obsolete absolute size @@ -4116,7 +9320,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000120 obsolete absolute height @@ -4128,7 +9331,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000121 obsolete relative height @@ -4161,7 +9363,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000123 obsolete absolute length @@ -4173,7 +9374,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000124 obsolete relative length @@ -4206,7 +9406,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000126 obsolete absolute mass @@ -4218,7 +9417,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000127 obsolete relative mass @@ -4250,7 +9448,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000129 obsolete absolute weight @@ -4262,7 +9459,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000130 obsolete relative weight @@ -4274,7 +9470,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000131 obsolete relative size @@ -4286,7 +9481,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -4323,7 +9517,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000134 obsolete absolute_angle @@ -4335,7 +9528,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000135 obsolete relative_angle @@ -4367,7 +9559,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -4378,7 +9569,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000138 obsolete absolute orientation @@ -4390,7 +9580,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000139 obsolete relative orientation @@ -4454,7 +9643,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000142 obsolete substance @@ -4466,7 +9654,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000143 obsolete addictive substance @@ -4478,7 +9665,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000144 This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a solid; 'PATO:0001546' @@ -4491,7 +9677,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000145 This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a liquid; PATO:0001548 ' @@ -4524,7 +9709,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000147 obsolete absolute temperature @@ -4536,7 +9720,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000148 obsolete body temperature @@ -4548,7 +9731,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000149 obsolete relative temperature @@ -4579,7 +9761,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000151 obsolete relative texture @@ -4612,7 +9793,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000153 obsolete absolute threshold @@ -4624,7 +9804,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000154 obsolete pain threshold @@ -4636,7 +9815,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000155 obsolete relative threshold @@ -4648,7 +9826,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -4659,7 +9836,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000157 obsolete absolute temporal @@ -4671,7 +9847,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -4682,7 +9857,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000159 obsolete absolute incidence @@ -4694,7 +9868,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000160 obsolete relative incidence @@ -4726,7 +9899,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000162 obsolete absolute rate @@ -4738,7 +9910,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000163 obsolete relative rate @@ -4750,7 +9921,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000164 obsolete relative temporal @@ -4782,7 +9952,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000166 obsolete absolute time @@ -4794,7 +9963,6 @@ Association is weaker than correlation or proportionality. These relations may b - A limited, often assigned period of activity. quality PATO:0000167 @@ -4814,7 +9982,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000168 obsolete relative time @@ -4846,7 +10013,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000170 obsolete yield @@ -4858,7 +10024,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000171 obsolete absolute yield @@ -4870,7 +10035,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000172 obsolete relative yield @@ -4882,7 +10046,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000173 obsolete function @@ -4894,7 +10057,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000174 obsolete autonomic function @@ -4906,7 +10068,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000175 obsolete behavioral function @@ -4918,7 +10079,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000176 obsolete metabolic function @@ -4930,7 +10090,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000177 obsolete physiological function @@ -4942,7 +10101,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000178 obsolete relative function @@ -4954,7 +10112,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000179 obsolete body position @@ -4966,7 +10123,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000180 obsolete body tone @@ -4978,7 +10134,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000181 obsolete piloerection @@ -4990,7 +10145,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000182 obsolete abdominal tone @@ -5002,7 +10156,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000183 obsolete limb tone @@ -5014,7 +10167,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000184 obsolete arousal @@ -5066,7 +10218,6 @@ Association is weaker than correlation or proportionality. These relations may b - A relational quality of occurrent inhering in a bearer by virtue of the bearer's ability to consume a resource. quality propensity to consume @@ -5131,7 +10282,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000190 obsolete gait @@ -5143,7 +10293,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000191 obsolete learning_and memory @@ -5155,7 +10304,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000192 obsolete locomotor_activity @@ -5167,7 +10315,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000193 obsolete mating @@ -5179,7 +10326,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000194 obsolete spontaneous_activity @@ -5191,7 +10337,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000195 obsolete startle response @@ -5203,7 +10348,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000196 obsolete vocalization @@ -5215,7 +10359,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000197 obsolete transfer_arousal @@ -5227,7 +10370,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000198 obsolete absolute consumption @@ -5239,7 +10381,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000199 obsolete relative consumption @@ -5251,7 +10392,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000200 obsolete learning @@ -5263,7 +10403,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000201 obsolete memory @@ -5275,7 +10414,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000202 obsolete long term memory @@ -5287,7 +10425,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000203 obsolete short term memory @@ -5299,7 +10436,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000204 obsolete absolute locomotor_activity @@ -5311,7 +10447,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000205 obsolete relative locomotor_activity @@ -5323,7 +10458,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000206 obsolete enzyme function @@ -5335,7 +10469,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000207 obsolete circulatory function @@ -5347,7 +10480,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000208 obsolete defensive function @@ -5359,7 +10491,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000209 obsolete digestive function @@ -5371,7 +10502,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000210 obsolete excretory function @@ -5383,7 +10513,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000211 obsolete muscle function @@ -5395,7 +10524,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000212 obsolete neural function @@ -5407,7 +10535,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000213 obsolete neurobehavioral function @@ -5419,7 +10546,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000214 obsolete reproductive function @@ -5431,7 +10557,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000215 obsolete respiratory function @@ -5443,7 +10568,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000216 obsolete heart rate @@ -5455,7 +10579,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000217 obsolete immune function @@ -5467,7 +10590,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000218 obsolete repair function @@ -5479,7 +10601,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000219 obsolete healing @@ -5491,7 +10612,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000220 obsolete regeneration @@ -5503,7 +10623,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000221 obsolete urination @@ -5515,7 +10634,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000222 obsolete muscle elevation @@ -5527,7 +10645,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000223 obsolete muscle strength @@ -5539,7 +10656,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000224 obsolete motor function @@ -5551,7 +10667,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000225 obsolete sensory function @@ -5563,7 +10678,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000226 obsolete tactile response @@ -5575,7 +10689,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000227 obsolete motor performance @@ -5587,7 +10700,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000228 obsolete auditory @@ -5599,7 +10711,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000229 obsolete olfactory @@ -5611,7 +10722,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000230 obsolete proprioreception @@ -5623,7 +10733,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000231 obsolete reflex @@ -5635,7 +10744,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000232 obsolete taste @@ -5647,7 +10755,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000233 obsolete touch @@ -5659,7 +10766,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000234 obsolete visual @@ -5671,7 +10777,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000235 obsolete odor_acuity @@ -5683,7 +10788,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000236 obsolete odor type @@ -5695,7 +10799,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000237 obsolete absolute odor_acuity @@ -5707,7 +10810,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000238 obsolete relative odor_acuity @@ -5719,7 +10821,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000239 obsolete blinking reflex @@ -5731,7 +10832,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000240 obsolete contact righting reflex @@ -5743,7 +10843,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000241 obsolete corneal reflex @@ -5755,7 +10854,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000242 obsolete flinch reflex @@ -5767,7 +10865,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000243 obsolete lordosis reflex @@ -5779,7 +10876,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000244 obsolete ocular reflex @@ -5791,7 +10887,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000245 obsolete pinna reflex @@ -5803,7 +10898,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000246 obsolete postural reflex @@ -5815,7 +10909,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000247 obsolete proboscis extension reflex @@ -5827,7 +10920,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000248 obsolete pupillary reflex @@ -5839,7 +10931,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000249 obsolete righting reflex @@ -5851,7 +10942,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000250 obsolete spinal reflex @@ -5863,7 +10953,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000251 obsolete startle reflex @@ -5875,7 +10964,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000252 obsolete suckling reflex @@ -5887,7 +10975,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000253 obsolete swallowing reflex @@ -5899,7 +10986,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000254 obsolete vibrissae reflex @@ -5911,7 +10997,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000255 obsolete taste_acuity @@ -5923,7 +11008,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000256 obsolete taste type @@ -5935,7 +11019,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000257 obsolete absolute taste_acuity @@ -5947,7 +11030,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000258 obsolete relative taste_acuity @@ -5959,7 +11041,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000259 obsolete visual_ability @@ -5971,7 +11052,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000260 obsolete visual_acuity @@ -6002,7 +11082,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000262 obsolete visual placing @@ -6014,7 +11093,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000263 obsolete visual threshold @@ -6026,7 +11104,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000264 obsolete absolute visual_ability @@ -6038,7 +11115,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000265 obsolete relative visual_ability @@ -6050,7 +11126,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000266 obsolete absolute visual_acuity @@ -6062,7 +11137,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000267 obsolete relative visual_acuity @@ -6074,7 +11148,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000268 obsolete absolute visual threshold @@ -6086,7 +11159,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000269 obsolete relative visual threshold @@ -6098,7 +11170,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000270 obsolete defecation @@ -6110,7 +11181,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000271 obsolete prepulse inhibition @@ -6122,7 +11192,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000272 obsolete relative neurobehavioral function @@ -6175,7 +11244,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000275 obsolete gestational period @@ -6228,7 +11296,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000278 obsolete hybrid fertility @@ -6260,7 +11327,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000280 obsolete backcross fertility @@ -6272,7 +11338,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000281 obsolete cytoplasmic sterility @@ -6284,7 +11349,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000282 obsolete f1 fertility @@ -6296,7 +11360,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000283 obsolete f2 fertility @@ -6308,7 +11371,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000284 obsolete germ line dependent fertility @@ -6320,7 +11382,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000285 obsolete soma dependent fertility @@ -6332,7 +11393,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000286 obsolete cytoplasmic male sterility @@ -6344,7 +11404,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000287 obsolete absolute litter size @@ -6356,7 +11415,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000288 obsolete relative litter size @@ -6368,7 +11426,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000289 obsolete respiratory rate @@ -6380,7 +11437,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000290 obsolete absolute respiratory rate @@ -6392,7 +11448,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000291 obsolete relative respiratory rate @@ -6404,7 +11459,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000292 obsolete mobility value @@ -6416,7 +11470,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000293 obsolete absolute activity value @@ -6428,7 +11481,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000294 obsolete process value @@ -6440,7 +11492,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000295 obsolete relative activity value @@ -6452,7 +11503,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000296 obsolete speed value @@ -6488,7 +11538,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000298 obsolete not arrested value @@ -6544,7 +11593,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000301 obsolete absolute speed value @@ -6556,7 +11604,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000302 obsolete relative speed value @@ -6636,7 +11683,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000305 obsolete age value @@ -6648,7 +11694,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000306 obsolete absolute age value @@ -6660,7 +11705,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000307 obsolete relative age value @@ -6712,7 +11756,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000310 obsolete color value @@ -6724,7 +11767,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000311 obsolete color hue value @@ -6736,7 +11778,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000312 obsolete color intensity value @@ -6748,7 +11789,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000313 obsolete color saturation value @@ -6760,7 +11800,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000314 obsolete flourescence value @@ -6772,7 +11811,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000315 obsolete color pattern value @@ -6784,7 +11822,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000316 obsolete relative color value @@ -6956,7 +11993,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000325 obsolete bright @@ -6968,7 +12004,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000326 obsolete dim @@ -7085,7 +12120,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -7115,7 +12149,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -7126,7 +12159,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality mottled (sensu Drosophila) PATO:0000335 @@ -7182,7 +12214,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000338 obsolete compatability value @@ -7194,7 +12225,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000339 obsolete gametophytic compatability value @@ -7206,7 +12236,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000340 obsolete relative compatability value @@ -7218,7 +12247,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000341 obsolete sporophytic compatability value @@ -7230,7 +12258,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000342 obsolete gametophyte compatible value @@ -7242,7 +12269,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000343 obsolete gametophyte incompatible value @@ -7299,7 +12325,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000346 obsolete sporophyte compatible value @@ -7311,7 +12336,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000347 obsolete sporophyte incompatible value @@ -7323,7 +12347,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000348 obsolete composition value @@ -7335,7 +12358,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000349 obsolete carbohydrate composition value @@ -7347,7 +12369,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000350 obsolete electrolyte composition value @@ -7359,7 +12380,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000351 obsolete macromolecular composition value @@ -7371,7 +12391,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000352 obsolete metabolite composition value @@ -7383,7 +12402,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000353 obsolete secondary product composition value @@ -7395,7 +12413,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000354 obsolete protein composition value @@ -7407,7 +12424,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000355 obsolete enzyme composition value @@ -7419,7 +12435,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000356 obsolete concentration value @@ -7431,7 +12446,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000357 obsolete protein concentration value @@ -7443,7 +12457,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000358 obsolete sugar concentration value @@ -7455,7 +12468,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000359 obsolete water content value @@ -7467,7 +12479,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000360 obsolete consistency value @@ -7479,7 +12490,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000361 obsolete gel consistency value @@ -7491,7 +12501,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000362 obsolete direction value @@ -7503,7 +12512,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000363 obsolete away @@ -7515,7 +12523,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000364 obsolete bi-directional @@ -7585,7 +12592,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000368 obsolete towards1 @@ -7597,7 +12603,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000369 obsolete unidirectional @@ -7629,7 +12634,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000371 obsolete distance value @@ -7641,7 +12645,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000372 obsolete absolute distance value @@ -7653,7 +12656,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000373 obsolete relative distance value @@ -7733,7 +12735,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000376 obsolete flavor value @@ -7745,7 +12746,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000377 obsolete frequency value @@ -7757,7 +12757,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000378 obsolete absolute frequency value @@ -7769,7 +12768,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000379 obsolete relative frequency value @@ -7851,7 +12849,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000382 obsolete gender value @@ -7903,7 +12900,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000385 obsolete hardness value @@ -7986,7 +12982,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000388 obsolete intensity value @@ -8020,7 +13015,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000390 obsolete extreme @@ -8032,7 +13026,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000391 obsolete intense @@ -8044,7 +13037,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000392 obsolete limited @@ -8056,7 +13048,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000393 obsolete maximal @@ -8131,7 +13122,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000397 @@ -8144,7 +13134,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000398 obsolete vigorous @@ -8156,7 +13145,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000399 obsolete life span value @@ -8168,7 +13156,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000400 obsolete morphology value @@ -8180,7 +13167,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000401 obsolete shape value @@ -8331,7 +13317,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -8410,7 +13395,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -8485,7 +13469,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000416 obsolete count value @@ -8497,7 +13480,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000417 obsolete absolute number value @@ -8509,7 +13491,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000418 obsolete relative number value @@ -8521,7 +13502,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -8532,7 +13512,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -8543,7 +13522,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000421 obsolete nutritional value @@ -8597,7 +13575,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000424 obsolete occurence value @@ -8609,7 +13586,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000425 @@ -8622,7 +13598,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -8678,7 +13653,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -8689,7 +13663,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000430 obsolete unique @@ -8701,7 +13674,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000431 obsolete odor value @@ -8713,7 +13685,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000432 obsolete parental type value @@ -8725,7 +13696,6 @@ Association is weaker than correlation or proportionality. These relations may b - A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a father. quality PATO:0000433 @@ -8745,7 +13715,6 @@ Association is weaker than correlation or proportionality. These relations may b - A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a mother. quality PATO:0000434 @@ -8765,7 +13734,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000435 obsolete pattern value @@ -8777,7 +13745,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000436 obsolete concrete @@ -8789,7 +13756,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000437 obsolete sleep pattern value @@ -8823,7 +13789,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000439 obsolete perseverative @@ -8876,7 +13841,6 @@ Association is weaker than correlation or proportionality. These relations may b - A sleep pattern quality inhering in a bearer by virtue of the bearer's inability to sleep. quality PATO:0000442 @@ -8898,7 +13862,6 @@ Association is weaker than correlation or proportionality. These relations may b - A sleep pattern quality inhering in a bearer by virtue of the bearer's disrupted sleep during normal sleeping period; often accompanied by cataplexy, sleep paralysis. quality PATO:0000443 @@ -8914,7 +13877,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000444 obsolete percentage value @@ -8926,7 +13888,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000445 obsolete relative percentage value @@ -8938,7 +13899,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000446 obsolete absolute percentage value @@ -8950,7 +13910,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000447 obsolete decreased percentage @@ -8962,7 +13921,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000448 obsolete high percentage @@ -8974,7 +13932,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000449 obsolete increased percentage @@ -8986,7 +13943,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000450 obsolete low percentage @@ -8998,7 +13954,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000451 obsolete pilosity value @@ -9010,7 +13965,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000452 obsolete relative pilosity value @@ -9084,7 +14038,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000456 obsolete abstract @@ -9096,7 +14049,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000457 obsolete deviation(from_normal) value @@ -9108,7 +14060,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000458 obsolete presence value @@ -9120,7 +14071,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000459 obsolete relative quantity value @@ -9264,7 +14214,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000465 obsolete marked @@ -9276,7 +14225,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000466 obsolete none @@ -9310,7 +14258,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -9321,7 +14268,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000469 obsolete high @@ -9372,7 +14318,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000471 obsolete low @@ -9384,7 +14329,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000472 obsolete quality value @@ -9396,7 +14340,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000473 obsolete relative_quality value @@ -9408,7 +14351,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000474 obsolete shattering value @@ -9420,7 +14362,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000475 obsolete threshability value @@ -9432,7 +14373,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000476 obsolete bad value @@ -9444,7 +14384,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000477 obsolete good value @@ -9456,7 +14395,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000478 obsolete poor value @@ -9468,7 +14406,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000479 obsolete regulation value @@ -9480,7 +14417,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000480 obsolete positive regulation @@ -9492,7 +14428,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000481 obsolete negative regulation @@ -9504,7 +14439,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000482 obsolete response value @@ -9516,7 +14450,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000483 obsolete tactile hyperresponsive @@ -9528,7 +14461,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000484 obsolete tactile hyporesponsive @@ -9540,7 +14472,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000485 obsolete mild response @@ -9552,7 +14483,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000486 obsolete moderate response @@ -9611,7 +14541,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000489 obsolete vigorous response @@ -9623,7 +14552,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000490 obsolete rhythym value @@ -9635,7 +14563,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000491 obsolete sensitivity value @@ -9647,7 +14574,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000492 obsolete absolute rhythym value @@ -9659,7 +14585,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000493 obsolete amplitude value @@ -9671,7 +14596,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000494 obsolete period value @@ -9683,7 +14607,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000495 obsolete persistence value @@ -9695,7 +14618,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000496 obsolete phase value @@ -9707,7 +14629,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000497 obsolete relative rhythym value @@ -9913,7 +14834,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000506 obsolete absolute sensitivity value @@ -9925,7 +14845,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000507 obsolete disease sensitivity value @@ -9937,7 +14856,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000508 obsolete relative sensitivity value @@ -9949,7 +14867,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000509 obsolete stress sensitivity value @@ -9961,7 +14878,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000510 obsolete temperature sensitivity value @@ -9973,7 +14889,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000511 obsolete absolute disease sensitivity value @@ -9985,7 +14900,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000512 obsolete relative disease sensitivity value @@ -10021,7 +14935,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000514 obsolete intolerant value @@ -10079,7 +14992,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000517 obsolete abiotic stress sensitivity value @@ -10091,7 +15003,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000518 obsolete chemical sensitivity value @@ -10103,7 +15014,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000519 obsolete humidity sensitivity value @@ -10115,7 +15025,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000520 obsolete radiation sensitivity value @@ -10127,7 +15036,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000521 obsolete drug sensitivity value @@ -10139,7 +15047,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000522 obsolete herbicide sensitivity value @@ -10151,7 +15058,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000523 obsolete insecticide sensitivity value @@ -10163,7 +15069,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000524 obsolete plant growth hormone sensitivity value @@ -10175,7 +15080,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000525 obsolete soil composition sensitivity value @@ -10187,7 +15091,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000526 obsolete absolute drug sensitivity value @@ -10199,7 +15102,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000527 obsolete relative drug sensitivity value @@ -10211,7 +15113,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000528 obsolete drug insensitive @@ -10223,7 +15124,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000529 obsolete drug sensitive @@ -10235,7 +15135,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000530 obsolete soil nutrient sensitivity value @@ -10247,7 +15146,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000531 obsolete macronutrient sensitivity value @@ -10259,7 +15157,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000532 obsolete micronutrient sensitivity value @@ -10271,7 +15168,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000533 obsolete osmotic response sensitivity @@ -10283,7 +15179,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000534 obsolete p h sensitivity value @@ -10295,7 +15190,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000535 obsolete salt sensitivity value @@ -10307,7 +15201,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000536 obsolete water sensitivity value @@ -10319,7 +15212,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000537 obsolete acid sensitivity value @@ -10331,7 +15223,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000538 obsolete alkali sensitivity value @@ -10343,7 +15234,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000539 obsolete drought sensitivity value @@ -10355,7 +15245,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000540 obsolete flooding sensitivity value @@ -10367,7 +15256,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000541 obsolete photosensitivity value @@ -10379,7 +15267,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000542 obsolete absolute photosensitivity value @@ -10391,7 +15278,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000543 obsolete light intensivity sensitivity value @@ -10403,7 +15289,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000544 obsolete light_quality sensitivity value @@ -10415,7 +15300,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000545 obsolete relative photosensitivity value @@ -10471,7 +15355,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000548 obsolete blue light sensitivity value @@ -10483,7 +15366,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000549 obsolete far red light sensitivity value @@ -10495,7 +15377,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000550 obsolete red light sensitivity value @@ -10507,7 +15388,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000551 obsolete u v light sensitivity value @@ -10519,7 +15399,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000552 obsolete absolute temperature sensitivity value @@ -10531,7 +15410,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000553 obsolete relative temperature sensitivity value @@ -10543,7 +15421,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000554 obsolete cold sensitive @@ -10555,7 +15432,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000555 obsolete heat sensitive @@ -10567,7 +15443,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality thermoresistant PATO:0000556 @@ -10580,7 +15455,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000557 obsolete thermosensitive @@ -10592,7 +15466,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000558 obsolete size value @@ -10604,7 +15477,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000559 obsolete absolute size value @@ -10616,7 +15488,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000560 obsolete height value @@ -10628,7 +15499,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000561 obsolete length value @@ -10640,7 +15510,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000562 obsolete mass value @@ -10652,7 +15521,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000563 obsolete relative size value @@ -10664,7 +15532,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000564 obsolete thickness value @@ -10676,7 +15543,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000565 obsolete volume value @@ -10688,7 +15554,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality :breadth PATO:0000566 @@ -10701,7 +15566,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000567 obsolete absolute height value @@ -10713,7 +15577,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000568 obsolete relative height value @@ -10791,7 +15654,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000571 obsolete absolute length value @@ -10803,7 +15665,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000572 obsolete relative length value @@ -10883,7 +15744,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000575 obsolete absolute mass value @@ -10895,7 +15755,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000576 obsolete relative mass value @@ -10907,7 +15766,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000577 obsolete weight value @@ -10919,7 +15777,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -10930,7 +15787,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -10941,7 +15797,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000580 obsolete absolute weight value @@ -10953,7 +15808,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000581 obsolete relative weight value @@ -11173,7 +16027,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000589 obsolete absolute thickness value @@ -11185,7 +16038,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000590 obsolete relative thickness value @@ -11270,7 +16122,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000593 obsolete absolute volume value @@ -11282,7 +16133,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000594 obsolete relative volume value @@ -11364,7 +16214,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000597 obsolete absolute width value @@ -11376,7 +16225,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000598 obsolete relative width value @@ -11456,7 +16304,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000601 obsolete spatial value @@ -11468,7 +16315,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000602 obsolete angle value @@ -11480,7 +16326,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000603 obsolete closure value @@ -11492,7 +16337,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000604 obsolete orientation value @@ -11504,7 +16348,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality location position @@ -11518,7 +16361,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000606 obsolete absolute angle value @@ -11530,7 +16372,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000607 obsolete relative angle value @@ -11603,7 +16444,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000611 obsolete absolute orientation value @@ -11615,7 +16455,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000612 obsolete relative orientation value @@ -11791,7 +16630,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -12116,7 +16954,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000637 obsolete structure value @@ -12200,7 +17037,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000641 obsolete deposition defective @@ -12369,7 +17205,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -12380,7 +17215,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -12413,7 +17247,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000652 obsolete substance value @@ -12425,7 +17258,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000653 obsolete addictive substance value @@ -12437,7 +17269,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000654 obsolete alcochol value @@ -12449,7 +17280,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000655 obsolete amphetamine value @@ -12461,7 +17291,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000656 obsolete time_quantity @@ -12473,7 +17302,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000657 obsolete length_quantity @@ -12485,7 +17313,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000658 obsolete metamphetamine value @@ -12497,7 +17324,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000659 obsolete temparature_quantity @@ -12509,7 +17335,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000660 obsolete angle_quantity @@ -12521,7 +17346,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000661 obsolete solid substance value @@ -12533,7 +17357,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000662 obsolete volume_quantity @@ -12545,7 +17368,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000663 obsolete occurrent @@ -12557,7 +17379,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000664 obsolete substance_quantity @@ -12590,7 +17411,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000666 obsolete energy_quantity @@ -12602,7 +17422,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000667 obsolete liquid substance value @@ -12614,7 +17433,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000668 obsolete mass_quantity @@ -12626,7 +17444,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000669 obsolete concentration_unit @@ -12638,7 +17455,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000670 obsolete saccharin versus water value @@ -12650,7 +17466,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000671 obsolete water value @@ -12662,7 +17477,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000672 obsolete unit @@ -12674,7 +17488,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000673 obsolete temperature value @@ -12686,7 +17499,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000674 obsolete absolute temperature value @@ -12698,7 +17510,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000675 obsolete body temperature value @@ -12710,7 +17521,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000676 obsolete relative temperature value @@ -12722,7 +17532,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -12733,7 +17542,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -12744,7 +17552,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000679 obsolete temporal value @@ -12756,7 +17563,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000680 obsolete absolute temporal value @@ -12768,7 +17574,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000681 obsolete incidence value @@ -12780,7 +17585,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000682 obsolete rate value @@ -12792,7 +17596,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000683 obsolete relative temporal value @@ -12804,7 +17607,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000684 obsolete absolute incidence value @@ -12816,7 +17618,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000685 obsolete relative incidence value @@ -12828,7 +17629,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000686 obsolete absolute rate value @@ -12840,7 +17640,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000687 obsolete relative rate value @@ -12917,7 +17716,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -12947,7 +17745,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000693 obsolete late @@ -13003,7 +17800,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000696 obsolete texture value @@ -13015,7 +17811,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000697 obsolete relative texture value @@ -13027,7 +17822,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000698 obsolete floury @@ -13039,7 +17833,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000699 obsolete glutinous @@ -13095,7 +17888,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000702 obsolete threshold value @@ -13107,7 +17899,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000703 obsolete absolute threshold value @@ -13119,7 +17910,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000704 obsolete pain threshold value @@ -13131,7 +17921,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000705 obsolete relative threshold value @@ -13179,7 +17968,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -13226,7 +18014,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -13237,7 +18024,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000710 obsolete time value @@ -13249,7 +18035,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000711 obsolete absolute time value @@ -13261,7 +18046,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000712 obsolete bouts value @@ -13273,7 +18057,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000713 obsolete relative time value @@ -13285,7 +18068,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000714 obsolete latency value @@ -13297,7 +18079,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -13308,7 +18089,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -13319,7 +18099,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000717 obsolete viability value @@ -13371,7 +18150,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000720 obsolete yield value @@ -13383,7 +18161,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000721 obsolete absolute yield value @@ -13395,7 +18172,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000722 obsolete relative yield value @@ -13407,7 +18183,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000723 obsolete high yield @@ -13419,7 +18194,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000724 obsolete low yield @@ -13431,7 +18205,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000725 obsolete function value @@ -13443,7 +18216,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000726 obsolete autonomic function value @@ -13455,7 +18227,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000727 obsolete behavioral function value @@ -13467,7 +18238,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000728 obsolete metabolic function value @@ -13479,7 +18249,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000729 obsolete physiological function value @@ -13491,7 +18260,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000730 obsolete relative function value @@ -13503,7 +18271,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000731 obsolete body position value @@ -13515,7 +18282,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000732 obsolete body tone value @@ -13527,7 +18293,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000733 obsolete piloerection value @@ -13539,7 +18304,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000734 obsolete abdominal tone value @@ -13551,7 +18315,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000735 obsolete limb tone value @@ -13563,7 +18326,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000736 obsolete dysfunctional value @@ -13575,7 +18337,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000737 obsolete functional value @@ -13587,7 +18348,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000738 obsolete enzyme function value @@ -13599,7 +18359,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000739 obsolete absolute enzyme function value @@ -13611,7 +18370,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000740 obsolete relative enzyme function value @@ -13623,7 +18381,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000741 obsolete high enzyme function value @@ -13635,7 +18392,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000742 obsolete low enzyme function value @@ -13647,7 +18403,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000743 obsolete arousal value @@ -13659,7 +18414,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000744 obsolete balance value @@ -13671,7 +18425,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000745 obsolete behavioral quality value @@ -13683,7 +18436,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000746 obsolete consumption value @@ -13695,7 +18447,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000747 obsolete coordination value @@ -13707,7 +18458,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000748 obsolete discrimination value @@ -13719,7 +18469,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000749 obsolete gait value @@ -13731,7 +18480,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000750 obsolete learning and memory value @@ -13743,7 +18491,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000751 obsolete locomotor activity value @@ -13755,7 +18502,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000752 obsolete mating value @@ -13767,7 +18513,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000753 obsolete spontaneous activity value @@ -13779,7 +18524,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000754 obsolete startle response @@ -13791,7 +18535,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000755 obsolete vocalization value @@ -13803,7 +18546,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000756 obsolete transfer arousal value @@ -13948,7 +18690,6 @@ Association is weaker than correlation or proportionality. These relations may b - Diminished, damaged, or weakened. PATO:0001624 quality @@ -14008,7 +18749,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000765 obsolete absolute consumption value @@ -14020,7 +18760,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000766 obsolete relative consumption value @@ -14032,7 +18771,6 @@ Association is weaker than correlation or proportionality. These relations may b - A consumption which is relatively high. high consumption quality @@ -14056,7 +18794,6 @@ Association is weaker than correlation or proportionality. These relations may b - A consumption which is relatively low. low consumption quality @@ -14187,7 +18924,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000774 obsolete bizarre gate @@ -14199,7 +18935,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000775 obsolete learning value @@ -14211,7 +18946,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000776 obsolete memory value @@ -14223,7 +18957,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000777 obsolete long term memory value @@ -14235,7 +18968,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000778 obsolete short term memory value @@ -14247,7 +18979,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000779 obsolete absolute locomotor activity value @@ -14259,7 +18990,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000780 obsolete relative locomotor activity value @@ -14271,7 +19001,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000781 obsolete circulatory function value @@ -14283,7 +19012,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000782 obsolete defensive function value @@ -14295,7 +19023,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000783 obsolete digestive function value @@ -14307,7 +19034,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000784 obsolete excretory function value @@ -14319,7 +19045,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000785 obsolete muscle function value @@ -14331,7 +19056,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000786 obsolete neural function value @@ -14343,7 +19067,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000787 obsolete neurobehavioral function value @@ -14355,7 +19078,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000788 obsolete reproductive function value @@ -14367,7 +19089,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000789 obsolete respiratory function value @@ -14379,7 +19100,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000790 obsolete heart rate value @@ -14391,7 +19111,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000791 obsolete immune function value @@ -14403,7 +19122,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000792 obsolete repair function value @@ -14415,7 +19133,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000793 obsolete immubocompetent value @@ -14427,7 +19144,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000794 obsolete immunodeficient value @@ -14439,7 +19155,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000795 obsolete healing value @@ -14451,7 +19166,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000796 obsolete regeneration value @@ -14463,7 +19177,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000797 obsolete urination value @@ -14475,7 +19188,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000798 obsolete defecation value @@ -14487,7 +19199,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000799 obsolete muscle elevation value @@ -14499,7 +19210,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000800 obsolete muscle strength value @@ -14511,7 +19221,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000801 obsolete motor function value @@ -14523,7 +19232,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000802 obsolete sensory function value @@ -14535,7 +19243,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000803 obsolete tactile response value @@ -14547,7 +19254,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000804 obsolete motor performance value @@ -14559,7 +19265,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000805 obsolete auditory value @@ -14571,7 +19276,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000806 obsolete olfactory value @@ -14583,7 +19287,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000807 obsolete proprioreception value @@ -14595,7 +19298,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000808 obsolete reflex value @@ -14607,7 +19309,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000809 obsolete taste value @@ -14619,7 +19320,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000810 obsolete touch value @@ -14631,7 +19331,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000811 obsolete visual value @@ -14643,7 +19342,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000812 obsolete odor acuity value @@ -14655,7 +19353,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000813 obsolete odor type value @@ -14667,7 +19364,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000814 obsolete taste acuity value @@ -14679,7 +19375,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000815 obsolete absolute odor acuity value @@ -14691,7 +19386,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000816 obsolete relative odor acuity value @@ -14703,7 +19397,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000817 obsolete anosmia @@ -14715,7 +19408,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000818 obsolete concentration_quantity @@ -14727,7 +19419,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000819 obsolete quantity @@ -14739,7 +19430,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000820 obsolete absolute taste acuity value @@ -14751,7 +19441,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000821 obsolete relative taste acuity value @@ -14763,7 +19452,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000822 obsolete taste type value @@ -14775,7 +19463,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000823 obsolete quinine taste @@ -14787,7 +19474,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000824 obsolete water taste @@ -14799,7 +19485,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000825 obsolete visual ability value @@ -14811,7 +19496,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000826 obsolete visual acuity value @@ -14823,7 +19507,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000827 obsolete visual threshold value @@ -14835,7 +19518,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000828 obsolete visual placing value @@ -14847,7 +19529,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000829 obsolete absolute visual ability value @@ -14859,7 +19540,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000830 obsolete relative visual ability value @@ -14871,7 +19551,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000831 obsolete absolute visual acuity value @@ -14883,7 +19562,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000832 obsolete relative visual acuity value @@ -14895,7 +19573,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000833 obsolete absolute visual threshold value @@ -14907,7 +19584,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000834 obsolete relative visual threshold value @@ -14919,7 +19595,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000835 obsolete auditory acuity value @@ -14931,7 +19606,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000836 obsolete auditory ability value @@ -14943,7 +19617,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000837 obsolete auditory threshold value @@ -14955,7 +19628,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000838 obsolete absolute auditory ability value @@ -14967,7 +19639,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000839 obsolete relative auditory ability value @@ -14979,7 +19650,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000840 obsolete absolute auditory acuity value @@ -14991,7 +19661,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000841 obsolete relative auditory acuity value @@ -15003,7 +19672,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000842 obsolete absolute auditory threshold value @@ -15015,7 +19683,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000843 obsolete relative auditory threshold value @@ -15027,7 +19694,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000844 obsolete auditory acuity @@ -15039,7 +19705,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000845 obsolete auditory ability @@ -15051,7 +19716,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000846 obsolete auditory threshold @@ -15063,7 +19727,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000847 obsolete absolute auditory acuity @@ -15075,7 +19738,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000848 obsolete relative auditory acuity @@ -15087,7 +19749,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000849 obsolete absolute auditory ability @@ -15099,7 +19760,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000850 obsolete relative auditory ability @@ -15111,7 +19771,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000851 obsolete absolute auditory threshold @@ -15123,7 +19782,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000852 obsolete relative auditory threshold @@ -15135,7 +19793,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000853 obsolete blinking reflex value @@ -15147,7 +19804,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000854 obsolete contact righting reflex value @@ -15159,7 +19815,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000855 obsolete corneal reflex value @@ -15171,7 +19826,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000856 obsolete flinch reflex value @@ -15183,7 +19837,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000857 obsolete lordosis reflex value @@ -15195,7 +19848,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000858 obsolete ocular reflex value @@ -15207,7 +19859,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000859 obsolete pinna reflex value @@ -15219,7 +19870,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000860 obsolete postural reflex value @@ -15231,7 +19881,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000861 obsolete proboscis extension reflex value @@ -15243,7 +19892,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000862 obsolete pupillary reflex value @@ -15255,7 +19903,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000863 obsolete righting reflex value @@ -15267,7 +19914,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000864 obsolete spinal reflex value @@ -15279,7 +19925,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000865 obsolete startle reflex value @@ -15291,7 +19936,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000866 obsolete suckling reflex value @@ -15303,7 +19947,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000867 obsolete swallowing reflex value @@ -15315,7 +19958,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000868 obsolete vibrissae reflex value @@ -15327,7 +19969,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000869 obsolete prepulse inhibition value @@ -15339,7 +19980,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000870 obsolete relative neurobehavioral function value @@ -15351,7 +19991,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000871 obsolete aggressive @@ -15363,7 +20002,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000872 obsolete anxious @@ -15375,7 +20013,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000873 obsolete cataleptic @@ -15387,7 +20024,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000874 obsolete fearful @@ -15399,7 +20035,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000875 obsolete irritable @@ -15411,7 +20046,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000876 obsolete respiratory rate value @@ -15423,7 +20057,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000877 obsolete absolute respiratory rate value @@ -15435,7 +20068,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000878 obsolete relative respiratory rate value @@ -15447,7 +20079,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000879 obsolete fecundity value @@ -15459,7 +20090,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000880 obsolete fertility value @@ -15471,7 +20101,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000881 obsolete gestational period value @@ -15483,7 +20112,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000882 obsolete litter size value @@ -15495,7 +20123,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000883 obsolete female fertility value @@ -15507,7 +20134,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000884 obsolete hybrid fertility value @@ -15519,7 +20145,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000885 obsolete male fertility value @@ -15531,7 +20156,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000886 obsolete absolute litter size value @@ -15543,7 +20167,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000887 obsolete relative litter size value @@ -15577,7 +20200,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000889 obsolete cytoplasmic male sterility value @@ -15655,7 +20277,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000893 obsolete backcross fertility value @@ -15667,7 +20288,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000894 obsolete cytoplasmic sterility value @@ -15679,7 +20299,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000895 obsolete f1 fertility value @@ -15691,7 +20310,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000896 obsolete f2 fertility value @@ -15703,7 +20321,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000897 obsolete germ line dependent fertility value @@ -15715,7 +20332,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000898 obsolete intercross fertility value @@ -15727,7 +20343,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000899 obsolete soma dependent fertility value @@ -15739,7 +20354,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000900 obsolete backcross fertile @@ -15751,7 +20365,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality backcross infertile PATO:0000901 @@ -15764,7 +20377,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000902 obsolete chinsurah boro type value @@ -15776,7 +20388,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000903 obsolete cms-hl type value @@ -15788,7 +20399,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000904 obsolete wild abortive value @@ -15800,7 +20410,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000905 obsolete f1 fertile @@ -15812,7 +20421,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality F1 infertile PATO:0000906 @@ -15825,7 +20433,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000907 obsolete f2 fertile @@ -15837,7 +20444,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality F2 infertile PATO:0000908 @@ -15850,7 +20456,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000909 obsolete intercross fertile @@ -15862,7 +20467,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality intercross infertile PATO:0000910 @@ -15944,7 +20548,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000913 obsolete qualitative value @@ -15956,7 +20559,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000914 obsolete continuant @@ -15988,7 +20590,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000916 obsolete absolute thickness @@ -16000,7 +20601,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000917 obsolete relative thickness @@ -16033,7 +20633,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000919 obsolete absolute volume @@ -16045,7 +20644,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000920 obsolete relative volume @@ -16078,7 +20676,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000922 obsolete absolute width @@ -16090,7 +20687,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000923 obsolete relative width @@ -16102,7 +20698,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000924 obsolete relative enzyme function @@ -16114,7 +20709,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000925 obsolete absolute enzyme function @@ -16126,7 +20720,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000926 obsolete intercross fertility @@ -16159,7 +20752,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000928 obsolete absolute photosensitivity @@ -16171,7 +20763,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000929 obsolete light intensivity sensitivity @@ -16183,7 +20774,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000930 obsolete light_quality sensitivity @@ -16195,7 +20785,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000931 obsolete blue light sensitivity @@ -16207,7 +20796,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000932 obsolete far red light sensitivity @@ -16219,7 +20807,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000933 obsolete red light sensitivity @@ -16231,7 +20818,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000934 obsolete u v light sensitivity @@ -16243,7 +20829,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000935 obsolete relative photosensitivity @@ -16318,7 +20903,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000939 @@ -16331,7 +20915,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000940 @@ -16365,7 +20948,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -16376,7 +20958,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -16681,7 +21262,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000958 obsolete opacity value @@ -16693,7 +21273,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000959 obsolete relative opacity @@ -16705,7 +21284,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000960 obsolete absolute opacity @@ -16717,7 +21295,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000961 obsolete relative opacity value @@ -16729,7 +21306,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000962 obsolete absolute opacity value @@ -16807,7 +21383,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000966 obsolete symmetry value @@ -16848,7 +21423,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000968 obsolete albino value @@ -16901,7 +21475,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000971 obsolete absolute permeability @@ -16913,7 +21486,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000972 obsolete relative permeability @@ -16946,7 +21518,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000974 obsolete relative porosity @@ -16958,7 +21529,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000975 obsolete absolute porosity @@ -16970,7 +21540,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000976 obsolete permeability value @@ -16982,7 +21551,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000977 obsolete absolute permeability value @@ -16994,7 +21562,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000978 obsolete relative permeability value @@ -17006,7 +21573,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000979 obsolete porosity value @@ -17018,7 +21584,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000980 obsolete absolute porosity value @@ -17030,7 +21595,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000981 obsolete relative porosity value @@ -17129,7 +21693,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000986 obsolete absolute consistency @@ -17141,7 +21704,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000987 obsolete relative consistency @@ -17153,7 +21715,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000988 obsolete relative consistency value @@ -17165,7 +21726,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000989 obsolete absolute consistency value @@ -17177,7 +21737,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000990 obsolete consistent @@ -17189,7 +21748,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000991 obsolete inconsistent @@ -17221,7 +21779,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000993 obsolete relative viscosity @@ -17233,7 +21790,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000994 obsolete absolute viscosity @@ -17245,7 +21801,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000995 obsolete viscosity value @@ -17257,7 +21812,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000996 obsolete absolute viscosity value @@ -17269,7 +21823,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0000997 obsolete relative viscosity value @@ -17321,7 +21874,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001000 obsolete relative alternation @@ -17333,7 +21885,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001001 obsolete absolute alternation @@ -17345,7 +21896,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001002 obsolete alternation value @@ -17357,7 +21907,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001003 obsolete relative alternation value @@ -17369,7 +21918,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001004 obsolete absolute alternation value @@ -17401,7 +21949,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001006 obsolete absolute latency @@ -17413,7 +21960,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001007 obsolete relative latency @@ -17425,7 +21971,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001008 obsolete absolute latency value @@ -17437,7 +21982,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001009 obsolete relative latency value @@ -17449,7 +21993,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001010 obsolete relative intensity @@ -17461,7 +22004,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001011 obsolete absolute intensity @@ -17473,7 +22015,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001012 obsolete relative intensity value @@ -17485,7 +22026,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001013 obsolete absolute intensity value @@ -17497,7 +22037,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001014 obsolete absolute occurence @@ -17509,7 +22048,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001015 obsolete relative occurence @@ -17521,7 +22059,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001016 obsolete absolute occurence value @@ -17533,7 +22070,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001017 obsolete relative occurence value @@ -17725,7 +22261,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001027 obsolete physical quantity @@ -17817,7 +22352,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -17828,7 +22362,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001033 obsolete stiffness @@ -17880,7 +22413,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001036 obsolete relative life span @@ -17892,7 +22424,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001037 obsolete absolute life span @@ -17904,7 +22435,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001038 obsolete ratio @@ -17916,7 +22446,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001039 obsolete absolute ratio @@ -17928,7 +22457,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001040 obsolete relative ratio @@ -17940,7 +22468,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001041 obsolete relative amplitude @@ -17952,7 +22479,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001042 obsolete absolute amplitude @@ -17987,7 +22513,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001044 obsolete absolute power @@ -17999,7 +22524,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001045 obsolete relative power @@ -18035,7 +22559,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001047 obsolete absolute resistance @@ -18047,7 +22570,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001048 obsolete relative resistance @@ -18059,7 +22581,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001049 obsolete absolute susceptibility @@ -18071,7 +22592,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001050 obsolete relative susceptibility @@ -18183,7 +22703,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001056 obsolete number @@ -18195,7 +22714,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001057 obsolete relative acceleration @@ -18207,7 +22725,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001058 obsolete absolute acceleration @@ -18219,7 +22736,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001059 obsolete relative efficiency @@ -18231,7 +22747,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001060 obsolete absolute efficiency @@ -18243,7 +22758,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001061 obsolete relative elasticity @@ -18255,7 +22769,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001062 obsolete absolute elasticity @@ -18267,7 +22780,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001063 obsolete relative flux @@ -18279,7 +22791,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001064 obsolete absolute flux @@ -18291,7 +22802,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001065 obsolete relative stiffness @@ -18303,7 +22813,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001066 obsolete absolute stiffness @@ -18315,7 +22824,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001067 obsolete absolute strain @@ -18327,7 +22835,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001068 obsolete relative strain @@ -18339,7 +22846,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001069 obsolete relative density @@ -18351,7 +22857,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001070 obsolete absolute density @@ -18363,7 +22868,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001071 obsolete relative energy @@ -18375,7 +22879,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001072 obsolete absolute energy @@ -18387,7 +22890,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001073 obsolete relative impulse @@ -18399,7 +22901,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001074 obsolete absolute impulse @@ -18411,7 +22912,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001075 obsolete absolute momentum @@ -18423,7 +22923,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001076 obsolete relative momentum @@ -18435,7 +22934,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001077 obsolete absolute pressure @@ -18447,7 +22945,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001078 obsolete relative pressure @@ -18459,7 +22956,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001079 obsolete absolute work @@ -18471,7 +22967,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001080 obsolete relative work @@ -18483,7 +22978,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001081 obsolete physical measure value @@ -18495,7 +22989,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001082 obsolete damage value @@ -18507,7 +23000,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001083 obsolete acceleration value @@ -18519,7 +23011,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001084 obsolete relative acceleration value @@ -18531,7 +23022,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001085 obsolete absolute acceleration value @@ -18543,7 +23033,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001086 obsolete efficiency value @@ -18555,7 +23044,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001087 obsolete relative efficiency value @@ -18567,7 +23055,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001088 obsolete absolute efficiency value @@ -18579,7 +23066,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001089 obsolete elasticity value @@ -18591,7 +23077,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001090 obsolete absolute elasticity value @@ -18603,7 +23088,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001091 obsolete relative elasticity value @@ -18615,7 +23099,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001092 obsolete flux value @@ -18627,7 +23110,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001093 obsolete relative flux value @@ -18639,7 +23121,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001094 obsolete absolute flux value @@ -18651,7 +23132,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001095 obsolete force value @@ -18663,7 +23143,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001096 obsolete absolute force value @@ -18675,7 +23154,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001097 obsolete relative force value @@ -18687,7 +23165,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001098 obsolete absolute force @@ -18699,7 +23176,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001099 obsolete relative force @@ -18711,7 +23187,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001100 obsolete position value @@ -18723,7 +23198,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001101 obsolete stiffness value @@ -18735,7 +23209,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001102 obsolete absolute stiffness value @@ -18747,7 +23220,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001103 obsolete relative stiffness value @@ -18759,7 +23231,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001104 obsolete strain value @@ -18771,7 +23242,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001105 obsolete absolute strain value @@ -18783,7 +23253,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001106 obsolete relative strain value @@ -18795,7 +23264,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001107 obsolete density value @@ -18807,7 +23275,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001108 obsolete relative amplitude value @@ -18819,7 +23286,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001109 obsolete absolute amplitude value @@ -18831,7 +23297,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001110 obsolete absolute density value @@ -18843,7 +23308,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001111 obsolete relative density value @@ -18855,7 +23319,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001112 obsolete energy value @@ -18867,7 +23330,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001113 obsolete absolute energy value @@ -18879,7 +23341,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001114 obsolete relative energy value @@ -18891,7 +23352,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001115 obsolete impulse value @@ -18903,7 +23363,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001116 obsolete relative impulse value @@ -18915,7 +23374,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001117 obsolete absolute impulse value @@ -18927,7 +23385,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001118 obsolete momentum value @@ -18939,7 +23396,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001119 obsolete absolute momentum value @@ -18951,7 +23407,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001120 obsolete relative momentum value @@ -18963,7 +23418,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001121 obsolete power value @@ -18975,7 +23429,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001122 obsolete absolute power value @@ -18987,7 +23440,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001123 obsolete relative power value @@ -18999,7 +23451,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001124 obsolete pressure value @@ -19011,7 +23462,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001125 obsolete absolute pressure value @@ -19023,7 +23473,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001126 obsolete relative pressure value @@ -19035,7 +23484,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001127 obsolete work value @@ -19047,7 +23495,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001128 obsolete absolute work value @@ -19059,7 +23506,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001129 obsolete relative work value @@ -19071,7 +23517,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001130 obsolete ratio value @@ -19083,7 +23528,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001131 obsolete absolute ratio value @@ -19095,7 +23539,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001132 obsolete relative ratio value @@ -19107,7 +23550,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001133 obsolete immunoglobulin concentration @@ -19119,7 +23561,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001134 obsolete ig a concentration @@ -19131,7 +23572,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001135 obsolete ig d concentration @@ -19143,7 +23583,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001136 obsolete ig e concentration @@ -19155,7 +23594,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001137 obsolete ig g concentration @@ -19167,7 +23605,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001138 obsolete ig m concentration @@ -19179,7 +23616,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001139 obsolete urine glucose composition @@ -19191,7 +23627,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001140 obsolete immunoglobulin concentration value @@ -19203,7 +23638,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001141 obsolete ig a concentration value @@ -19215,7 +23649,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001142 obsolete ig d concentration value @@ -19227,7 +23660,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001143 obsolete ig e concentration value @@ -19239,7 +23671,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001144 obsolete ig g concentration value @@ -19251,7 +23682,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001145 obsolete ig m concentration value @@ -19263,7 +23693,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001146 obsolete resistance value @@ -19275,7 +23704,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001147 obsolete absolute resistance value @@ -19287,7 +23715,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001148 obsolete relative resistance value @@ -19299,7 +23726,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001149 obsolete susceptibility value @@ -19311,7 +23737,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001150 obsolete absolute susceptibility value @@ -19323,7 +23748,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001151 obsolete relative susceptibility value @@ -19402,7 +23826,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001155 obsolete absolute concentration @@ -19414,7 +23837,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001156 obsolete relative concentration @@ -19426,7 +23848,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001157 obsolete absolute concentration value @@ -19438,7 +23859,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001158 obsolete relative concentration value @@ -19470,7 +23890,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001160 obsolete unconcentrated @@ -19590,7 +24009,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001165 obsolete urine enzyme composition value @@ -19602,7 +24020,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001166 obsolete urine enzyme composition @@ -19655,7 +24072,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -19666,7 +24082,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001170 obsolete numerical value @@ -19723,7 +24138,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001173 obsolete urine glucose composition value @@ -19735,7 +24149,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001174 obsolete urine composition @@ -19747,7 +24160,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001175 obsolete urine composition @@ -19759,7 +24171,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001176 obsolete deaf @@ -19771,7 +24182,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001177 obsolete blind @@ -19805,7 +24215,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001179 obsolete immune @@ -19817,7 +24226,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001180 obsolete relative response @@ -19829,7 +24237,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001181 obsolete absolute response @@ -19841,7 +24248,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001182 obsolete relative response @@ -19853,7 +24259,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001183 obsolete absolute response value @@ -19865,7 +24270,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001184 obsolete maturity value @@ -20151,7 +24555,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001197 obsolete modified direction @@ -20163,7 +24566,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001198 obsolete unmodified direction @@ -20236,7 +24638,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -20247,7 +24648,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -20258,7 +24658,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001204 @@ -20317,7 +24716,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001207 obsolete absolute compatability @@ -20349,7 +24747,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001209 obsolete absolute function @@ -20361,7 +24758,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001210 obsolete plane_angle_quantity @@ -20373,7 +24769,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001211 obsolete solid_angle_quantity @@ -20385,7 +24780,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001212 obsolete length_unit @@ -20397,7 +24791,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001213 obsolete mass_unit @@ -20409,7 +24802,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001214 obsolete temparature_unit @@ -20421,7 +24813,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001215 obsolete time_unit @@ -20433,7 +24824,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001216 obsolete volume_unit @@ -20445,7 +24835,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001217 obsolete energy_unit @@ -20457,7 +24846,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001218 obsolete substance_unit @@ -20469,7 +24857,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001219 obsolete area_unit @@ -20481,7 +24868,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001220 obsolete angle_unit @@ -20493,7 +24879,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001221 obsolete plane_angle_unit @@ -20505,7 +24890,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001222 obsolete solid_angle_unit @@ -20517,7 +24901,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001223 obsolete quantitative value @@ -20529,7 +24912,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001224 obsolete real number @@ -20541,7 +24923,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001225 obsolete relational number @@ -20553,7 +24934,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -20586,7 +24966,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001228 obsolete dull @@ -20640,7 +25019,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001231 obsolete cold insensitive @@ -20652,7 +25030,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001232 obsolete heat insentive @@ -20711,7 +25088,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001235 obsolete strength value @@ -20749,7 +25125,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -20760,7 +25135,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -20771,7 +25145,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -20782,7 +25155,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -21443,7 +25815,6 @@ Association is weaker than correlation or proportionality. These relations may b - A color consisting of grey color and high saturation. quality PATO:0001273 @@ -21463,7 +25834,6 @@ Association is weaker than correlation or proportionality. These relations may b - A color consisting of grey color and low saturation. quality PATO:0001274 @@ -21563,7 +25933,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -22606,7 +26975,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001326 @@ -22800,7 +27168,6 @@ Association is weaker than correlation or proportionality. These relations may b - A biological sex quality inhering in an individual whose sex is unknown. quality PATO:0001336 @@ -23344,7 +27711,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -24950,7 +29316,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -25117,7 +29482,6 @@ Association is weaker than correlation or proportionality. These relations may b - An extended swelling in plant organs caused primarily by an excessive accumulation of water. quality edemic @@ -25139,7 +29503,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -25531,7 +29894,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -25725,7 +30087,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -25940,7 +30301,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -26093,7 +30453,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -26300,7 +30659,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -26402,7 +30760,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -27362,7 +31719,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -27373,7 +31729,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -27443,7 +31798,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -27564,7 +31918,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -27620,7 +31973,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -27631,7 +31983,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -27682,7 +32033,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -27956,7 +32306,6 @@ Association is weaker than correlation or proportionality. These relations may b - A spatial quality inhering in an inactive muscle or muscle fibers by virtue of the bearer's exhibiting gradual lengthening. quality PATO:0001582 @@ -28155,7 +32504,6 @@ Association is weaker than correlation or proportionality. These relations may b - Increased, intensified. PATO:0002017 quality @@ -28641,7 +32989,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -28783,7 +33130,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -29176,7 +33522,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -29352,7 +33697,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -29363,7 +33707,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -29374,7 +33717,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -29404,7 +33746,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -29458,7 +33799,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -29782,7 +34122,6 @@ Association is weaker than correlation or proportionality. These relations may b - An action potential which is relatively low. low action potential quality @@ -29803,7 +34142,6 @@ Association is weaker than correlation or proportionality. These relations may b - An action potential which is relatively high. high action potential quality @@ -29938,7 +34276,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -30605,7 +34942,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -31335,7 +35671,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -32299,7 +36634,6 @@ Association is weaker than correlation or proportionality. These relations may b - A cellular quality inhering in a cell by virtue of its anisotropic intracellular organization. PATO:0001769 quality @@ -32400,7 +36734,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -32759,7 +37092,6 @@ Association is weaker than correlation or proportionality. These relations may b A curvature quality inhering in a bearer by virtue of the bearer's being curved outward. - flared quality PATO:0001785 @@ -33061,7 +37393,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -33375,7 +37706,6 @@ Association is weaker than correlation or proportionality. These relations may b - A relaxation which is relatively high. high relaxation quality @@ -33397,7 +37727,6 @@ Association is weaker than correlation or proportionality. These relations may b - A relaxation which is relatively low. low relaxation quality @@ -33569,7 +37898,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -34012,7 +38340,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -34089,7 +38416,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -34640,7 +38966,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -36254,7 +40579,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -37390,7 +41714,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -37603,7 +41926,6 @@ Association is weaker than correlation or proportionality. These relations may b - A shape that inheres in a part of a surface. An object can have different surface shapes on different parts of its surface. quality PATO:0002004 @@ -37837,7 +42159,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -38920,7 +43241,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -39359,7 +43679,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -39455,7 +43774,6 @@ Association is weaker than correlation or proportionality. These relations may b - The period after death of the organism. George Gkoutos 2009-09-25T11:29:21Z @@ -39478,7 +43796,6 @@ Association is weaker than correlation or proportionality. These relations may b - The period before death of the organism. George Gkoutos 2009-09-25T11:31:13Z @@ -39501,7 +43818,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -39689,7 +44005,6 @@ Association is weaker than correlation or proportionality. These relations may b - A disposition inhering in a tumour to progress or fail to progress during it's life time. george 2009-10-05T12:15:02Z @@ -41148,7 +45463,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -41159,7 +45473,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -41170,7 +45483,6 @@ Association is weaker than correlation or proportionality. These relations may b - true @@ -46090,7 +50402,7 @@ Association is weaker than correlation or proportionality. These relations may b quality PATO:0002372 - grand multi[arous + grand multiparous @@ -46688,7 +51000,6 @@ Association is weaker than correlation or proportionality. These relations may b - gkoutos 2012-12-07T05:34:16Z quality @@ -49509,7 +53820,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - PATO:0002628 quality PATO:0002528 @@ -49523,7 +53833,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - PATO:0002629 quality PATO:0002529 @@ -49537,7 +53846,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - PATO:0002630 quality PATO:0002530 @@ -49551,7 +53859,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - PATO:0002631 quality PATO:0002531 @@ -49565,7 +53872,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - PATO:0002632 quality PATO:0002532 @@ -52002,12 +56308,87 @@ height'). + + + + + The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.. + + quality + PATO:0040021 + unpaired + + + + + The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape. + + 2018-11-19T21:49:07Z + quality + PATO:0040022 + flared + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body. + + 2018-11-19T21:54:33Z + disto-medial orientation + distomedial + quality + PATO:0040023 + distomedial orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body. + https://en.wiktionary.org/wiki/distomedial + + + + + + + + + The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism. + + paired + quality + PATO:0040024 + bilaterally paired + + + + + The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism. + https://orcid.org/0000-0003-3162-7490 + + + + A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present. - http://orcid.org/0000-0001-5208-3432 + quality PATO:0040025 lesioned @@ -52021,6 +56402,21 @@ height'). + + + + + A structural quality inhering in a bearer by virtue of the bearer's being marked by interruptions or gaps. + http://orcid.org/0000-0001-5208-3432 + structurally interrupted + quality + PATO:0040026 + This term is intended for use for terms such as MP:0010461 discontinuous pulmonary artery and MP:0004157 interrupted aortic arch. + structurally discontinuous + + + + @@ -54781,25 +59177,72 @@ height'). - - - + - - - + + + + + + - + - - - + + + pending final vetting + + + + + + + + + +## Elucidation + +This is used when the statement/axiom is assumed to hold true 'eternally' + +## How to interpret (informal) + +First the "atemporal" FOL is derived from the OWL using the standard +interpretation. This axiom is temporalized by embedding the axiom +within a for-all-times quantified sentence. The t argument is added to +all instantiation predicates and predicates that use this relation. + +## Example + + Class: nucleus + SubClassOf: part_of some cell + + forall t : + forall n : + instance_of(n,Nucleus,t) + implies + exists c : + instance_of(c,Cell,t) + part_of(n,c,t) + +## Notes + +This interpretation is *not* the same as an at-all-times relation + + + axiom holds for all times + @@ -55679,9 +60122,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + @@ -55690,9 +60133,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + diff --git a/pato-simple.json b/pato-simple.json index 650f2f30..e2c16732 100644 --- a/pato-simple.json +++ b/pato-simple.json @@ -411,35 +411,38 @@ "type" : "CLASS", "lbl" : "obsolete value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000485", + "id" : "http://purl.obolibrary.org/obo/PATO_0000001", "meta" : { + "definition" : { + "val" : "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities", + "xrefs" : [ "PATOC:GVG" ] + }, "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "quality (PATO)" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000072" } ] }, "type" : "CLASS", - "lbl" : "obsolete mild response" + "lbl" : "quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000001", + "id" : "http://purl.obolibrary.org/obo/PATO_0000485", "meta" : { - "definition" : { - "val" : "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities", - "xrefs" : [ "PATOC:GVG" ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000072" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "quality" + "lbl" : "obsolete mild response" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001331", "meta" : { @@ -2650,11 +2653,6 @@ "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "flared", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -6917,6 +6915,35 @@ }, "type" : "CLASS", "lbl" : "obsolete relative neurobehavioral function value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040023", + "meta" : { + "definition" : { + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body.", + "xrefs" : [ "https://en.wiktionary.org/wiki/distomedial" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "distomedial", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "disto-medial orientation", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-19T21:54:33Z" + } ] + }, + "type" : "CLASS", + "lbl" : "distomedial orientation" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000804", "meta" : { @@ -6943,6 +6970,28 @@ }, "type" : "CLASS", "lbl" : "obsolete tactile response value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040024", + "meta" : { + "definition" : { + "val" : "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] + }, + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "paired", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0001-5208-3432" + } ] + }, + "type" : "CLASS", + "lbl" : "bilaterally paired" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000806", "meta" : { @@ -6956,6 +7005,23 @@ }, "type" : "CLASS", "lbl" : "obsolete olfactory value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040021", + "meta" : { + "definition" : { + "val" : "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism..", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0001-5208-3432" + } ] + }, + "type" : "CLASS", + "lbl" : "unpaired" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000805", "meta" : { @@ -6969,6 +7035,26 @@ }, "type" : "CLASS", "lbl" : "obsolete auditory value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040022", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-19T21:49:07Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0001-5208-3432" + } ] + }, + "type" : "CLASS", + "lbl" : "flared" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000808", "meta" : { @@ -7003,7 +7089,7 @@ "xrefs" : [ "NCIT:C3824" ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7025,6 +7111,31 @@ }, "type" : "CLASS", "lbl" : "obsolete taste value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040026", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being marked by interruptions or gaps.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "structurally interrupted", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is intended for use for terms such as MP:0010461 discontinuous pulmonary artery and MP:0004157 interrupted aortic arch." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "structurally discontinuous" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000800", "meta" : { @@ -35864,7 +35975,7 @@ } ] }, "type" : "CLASS", - "lbl" : "grand multi[arous" + "lbl" : "grand multiparous" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000195", "meta" : { @@ -46345,12 +46456,33 @@ }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this day is part of this year (occurrent parthood)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000031" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000004" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000017" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000019" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." @@ -46360,12 +46492,21 @@ }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "part_of" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my brain is part of my body (continuant parthood, two material entities)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." @@ -46550,6 +46691,9 @@ }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my body has part my brain (continuant parthood, two material entities)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." @@ -49648,14 +49792,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001163", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001159" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001247", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001163", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001159" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001381", "pred" : "is_a", @@ -49804,14 +49948,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001629", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001729", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002178", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001729", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005004", "pred" : "is_a", @@ -50084,14 +50228,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001480", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002464", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045077", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002464", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001713", "pred" : "is_a", @@ -50120,14 +50264,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002189", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001632", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001516", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001632", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001465", "pred" : "is_a", @@ -50137,17 +50281,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001590" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", + "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045070", "pred" : "is_a", @@ -50228,14 +50372,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002471", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001824", "pred" : "is_a", @@ -50256,14 +50400,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002250", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002248" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001966", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001986", "pred" : "is_a", @@ -50404,14 +50548,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001248", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001380", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000955" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001380", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000066", "pred" : "is_a", @@ -50452,14 +50596,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001728", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001727" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001678", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001029" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001625", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001559" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001678", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001029" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001281", "pred" : "is_a", @@ -50645,17 +50789,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002067" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001230" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", + "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001230" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001539", "pred" : "is_a", @@ -50680,14 +50824,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001773", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001178" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001643", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001178" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001402", "pred" : "is_a", @@ -50928,14 +51072,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002367", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000384" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002367", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000384" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", "pred" : "is_a", @@ -51056,14 +51200,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001965", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001877", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001419" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002351", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001877", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001419" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002140", "pred" : "is_a", @@ -51208,14 +51352,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001614", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000467", "pred" : "is_a", @@ -51452,14 +51596,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001615", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", "pred" : "is_a", @@ -51520,14 +51664,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002271", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0055002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", "pred" : "is_a", @@ -51628,14 +51772,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002498", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000944", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002124", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000944", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002366", "pred" : "is_a", @@ -51660,14 +51804,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002026", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001243", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002026", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002228", "pred" : "is_a", @@ -51700,14 +51844,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000300", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001055", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001269", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001055", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002287", "pred" : "is_a", @@ -51736,14 +51880,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002151", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001785" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002018", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002016" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002201", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002018", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002016" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002326", "pred" : "is_a", @@ -52228,14 +52372,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001961", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001934", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001961", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", "pred" : "is_a", @@ -52284,14 +52428,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015010", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015009" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000381", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000044" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0010004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0010002" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000381", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000044" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002109", "pred" : "is_a", @@ -52412,22 +52556,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001440", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001531" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002376", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001855", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002163", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002376", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001645" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002163", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001645" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001570", "pred" : "is_a", @@ -52492,14 +52636,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002029", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002027" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045009", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045009", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002150", "pred" : "is_a", @@ -53276,14 +53420,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000643", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001598" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002138", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002050", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002138", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045013", "pred" : "is_a", @@ -53429,17 +53573,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001923", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", "pred" : "is_a", @@ -53872,14 +54016,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000626", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000634", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000626", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002370", "pred" : "is_a", @@ -53900,14 +54044,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002385", "pred" : "is_a", @@ -53984,14 +54128,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001315", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001333", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002324" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001653", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001652" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001333", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002324" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001312", "pred" : "is_a", @@ -54236,6 +54380,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001205", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001206" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040023", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001553", "pred" : "is_a", @@ -54316,14 +54464,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015017" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000161", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002062" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000039", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000161", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002062" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001835", "pred" : "is_a", @@ -54528,14 +54676,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001333", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045013", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001229", "pred" : "is_a", @@ -54588,14 +54736,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000375", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000040" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045049", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045054" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045049", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001193", "pred" : "is_a", @@ -54972,14 +55120,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001598" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002424", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002313", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002424", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000622", "pred" : "is_a", @@ -55116,14 +55264,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001951", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000938", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002264" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001278", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000953" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000938", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002264" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000636", "pred" : "is_a", @@ -55160,14 +55308,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002345", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001814", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002345", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045034", "pred" : "is_a", @@ -55200,6 +55348,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040026", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002310", "pred" : "is_a", @@ -55296,14 +55448,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002167", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001646" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002327", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002456", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002327", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000499", "pred" : "is_a", @@ -55340,14 +55492,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002077", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001476", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045076", "pred" : "is_a", @@ -55468,6 +55620,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001370", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002012" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040022", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", @@ -55564,14 +55720,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000624", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002435", "pred" : "is_a", @@ -55768,14 +55924,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001430", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/PATO_0002212" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001430", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002324", "pred" : "is_a", @@ -56148,14 +56304,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001746", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001744" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001748", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001758", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001757" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001748", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002632", "pred" : "is_a", @@ -56372,14 +56528,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000122" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000122" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001275", "pred" : "is_a", @@ -56468,14 +56624,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001717", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001674", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001480", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -56572,14 +56728,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002106", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002078", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002054", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002078", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002403", "pred" : "is_a", @@ -56648,14 +56804,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000077" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001744", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001739" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000077" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000330", "pred" : "is_a", @@ -56812,6 +56968,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001474", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040021", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002503", "pred" : "is_a", @@ -56860,14 +57020,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002323", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002062" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045076", - "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001943", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000951" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045076", + "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002341", "pred" : "is_a", @@ -57020,14 +57180,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001264", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045086", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000403", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045086", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000321", "pred" : "is_a", @@ -57196,14 +57356,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001290", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002534", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001753", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002534", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002123", "pred" : "is_a", @@ -57376,14 +57536,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001454", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000085" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002501", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000632", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002501", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002407", "pred" : "is_a", @@ -57724,6 +57884,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040024", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001354", "pred" : "is_a", @@ -57768,14 +57932,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002168", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002149", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001788" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045092", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045090" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002149", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001788" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", "pred" : "is_a", @@ -57812,14 +57976,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001321", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001321", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", @@ -57972,14 +58136,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001194", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002261", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002155", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002261", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001793", "pred" : "is_a", @@ -57992,14 +58156,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001317", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002070", "pred" : "is_a", @@ -58100,14 +58264,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001339", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000627", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000619", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000627", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001511", "pred" : "is_a", @@ -58137,7 +58301,7 @@ "pred" : "http://www.geneontology.org/formats/oboInOwl#saved-by", "val" : "segerdel" } ], - "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-09-13/pato-simple.json" + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29/pato-simple.json" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ ], diff --git a/pato-simple.obo b/pato-simple.obo index 5e6cbfbe..98110b4d 100644 --- a/pato-simple.obo +++ b/pato-simple.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: pato/releases/2019-09-13/pato-simple.owl +data-version: pato/releases/2019-10-29/pato-simple.owl date: 07:02:2018 10:27 saved-by: segerdel auto-generated-by: OBO-Edit 2.3.1 @@ -26,6 +26,7 @@ id: PATO:0000001 name: quality alt_id: PATO:0000072 def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" [PATOC:GVG] +property_value: IAO:0000589 "quality (PATO)" xsd:string [Term] id: PATO:0000002 @@ -12072,7 +12073,6 @@ def: "A curvature quality inhering in a bearer by virtue of the bearer's being c comment: TODO: obsolete, definition too ambiguous. subset: cell_quality subset: value_slim -synonym: "flared" EXACT [] is_a: PATO:0000406 ! curved [Term] @@ -17493,7 +17493,7 @@ creation_date: 2012-05-03T11:29:38Z [Term] id: PATO:0002372 -name: grand multi[arous +name: grand multiparous def: "A viviparous organism that has given birth five or more times." [wiki:http\://en.wikipedia.org/wiki/Parity_(biology)] subset: value_slim is_a: PATO:0002369 ! multiparous @@ -19991,11 +19991,53 @@ is_a: PATO:0000383 ! female property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-16T22:52:49Z xsd:dateTime +[Term] +id: PATO:0040021 +name: unpaired +def: "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.." [https://orcid.org/0000-0003-3162-7490] +is_a: PATO:0000467 ! present +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 + +[Term] +id: PATO:0040022 +name: flared +def: "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape." [] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:49:07Z xsd:dateTime + +[Term] +id: PATO:0040023 +name: distomedial orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body." [https://en.wiktionary.org/wiki/distomedial] +synonym: "disto-medial orientation" EXACT [] +synonym: "distomedial" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:54:33Z xsd:dateTime + +[Term] +id: PATO:0040024 +name: bilaterally paired +def: "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism." [https://orcid.org/0000-0003-3162-7490] +synonym: "paired" BROAD [] +is_a: PATO:0000467 ! present +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 + [Term] id: PATO:0040025 name: lesioned def: "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present." [NCIT:C3824] is_a: PATO:0000141 ! structure +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 + +[Term] +id: PATO:0040026 +name: structurally discontinuous +def: "A structural quality inhering in a bearer by virtue of the bearer's being marked by interruptions or gaps." [] +comment: This term is intended for use for terms such as MP:0010461 discontinuous pulmonary artery and MP:0004157 interrupted aortic arch. +synonym: "structurally interrupted" EXACT [] +is_a: PATO:0001241 ! physical object quality created_by: http://orcid.org/0000-0001-5208-3432 [Term] @@ -21090,6 +21132,7 @@ is_a: has_ratio_quality ! has_ratio_quality id: has_part name: has part name: has_part +namespace: external def: "a core relation that holds between a whole and its part" [] def: "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2." [PATOC:CJM] comment: We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. @@ -21154,6 +21197,7 @@ namespace: pato.ontology id: part_of name: part of name: part_of +namespace: external def: "a core relation that holds between a part and its whole" [] xref: BFO:0000050 property_value: IAO:0000111 "is part of" xsd:string @@ -21165,6 +21209,15 @@ property_value: IAO:0000116 "Occurrents are not subject to change and so parthoo property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string property_value: IAO:0000118 "part_of" xsd:string property_value: RO:0001900 RO:0001901 +property_value: RO:0040042 BFO:0000002 +property_value: RO:0040042 BFO:0000003 +property_value: RO:0040042 BFO:0000004 +property_value: RO:0040042 BFO:0000017 +property_value: RO:0040042 BFO:0000019 +property_value: RO:0040042 BFO:0000020 +property_value: RO:0040042 BFO:0000031 +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf property_value: seeAlso http://www.obofoundry.org/ro/#OBO_REL:part_of xsd:string is_transitive: true inverse_of: has_part ! has part diff --git a/pato-simple.owl b/pato-simple.owl index 787de563..97aa9ad5 100644 --- a/pato-simple.owl +++ b/pato-simple.owl @@ -11,7 +11,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + OBO-Edit 2.3.1 07:02:2018 10:27 quality @@ -68,6 +68,12 @@ + + + + + + @@ -86,6 +92,12 @@ + + + + + + @@ -302,12 +314,23 @@ A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'. part_of + + + + + + + BFO:0000050 + external quality part_of part_of + part of part of part_of + + http://www.obofoundry.org/ro/#OBO_REL:part_of @@ -331,10 +354,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. has_part BFO:0000051 + external quality has_part has_part We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. + has part has part has_part @@ -681,6 +706,7 @@ Association is weaker than correlation or proportionality. These relations may b A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities + quality (PATO) PATO:0000072 quality PATO:0000001 @@ -28878,7 +28904,6 @@ Association is weaker than correlation or proportionality. These relations may b A curvature quality inhering in a bearer by virtue of the bearer's being curved outward. - flared quality PATO:0001785 @@ -41364,7 +41389,7 @@ Association is weaker than correlation or proportionality. These relations may b quality PATO:0002372 - grand multi[arous + grand multiparous @@ -47042,12 +47067,87 @@ height'). + + + + + The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.. + + quality + PATO:0040021 + unpaired + + + + + The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape. + + 2018-11-19T21:49:07Z + quality + PATO:0040022 + flared + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body. + + 2018-11-19T21:54:33Z + disto-medial orientation + distomedial + quality + PATO:0040023 + distomedial orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body. + https://en.wiktionary.org/wiki/distomedial + + + + + + + + + The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism. + + paired + quality + PATO:0040024 + bilaterally paired + + + + + The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism. + https://orcid.org/0000-0003-3162-7490 + + + + A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present. - http://orcid.org/0000-0001-5208-3432 + quality PATO:0040025 lesioned @@ -47061,6 +47161,21 @@ height'). + + + + + A structural quality inhering in a bearer by virtue of the bearer's being marked by interruptions or gaps. + http://orcid.org/0000-0001-5208-3432 + structurally interrupted + quality + PATO:0040026 + This term is intended for use for terms such as MP:0010461 discontinuous pulmonary artery and MP:0004157 interrupted aortic arch. + structurally discontinuous + + + + diff --git a/pato.json b/pato.json index 994ee92c..7c45f9e6 100644 --- a/pato.json +++ b/pato.json @@ -62,6 +62,20 @@ }, "type" : "CLASS", "lbl" : "obsolete unknown sex" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0010646", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of cell communication" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000487", "meta" : { @@ -85,6 +99,44 @@ }, "type" : "CLASS", "lbl" : "responsive to" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0044424", + "meta" : { + "definition" : { + "val" : "OBSOLETE. Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.", + "xrefs" : [ "GOC:jl" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", + "val" : "GO:0005622" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete intracellular part" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0010647", + "meta" : { + "definition" : { + "val" : "Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of cell communication" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000003", "meta" : { @@ -233,6 +285,20 @@ }, "type" : "CLASS", "lbl" : "mixed sex" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0010648", + "meta" : { + "definition" : { + "val" : "Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of cell communication" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001339", "meta" : { @@ -411,35 +477,38 @@ "type" : "CLASS", "lbl" : "obsolete value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000485", + "id" : "http://purl.obolibrary.org/obo/PATO_0000001", "meta" : { + "definition" : { + "val" : "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities", + "xrefs" : [ "PATOC:GVG" ] + }, "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "quality (PATO)" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000072" } ] }, "type" : "CLASS", - "lbl" : "obsolete mild response" + "lbl" : "quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000001", + "id" : "http://purl.obolibrary.org/obo/PATO_0000485", "meta" : { - "definition" : { - "val" : "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities", - "xrefs" : [ "PATOC:GVG" ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000072" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "quality" + "lbl" : "obsolete mild response" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001331", "meta" : { @@ -512,6 +581,23 @@ }, "type" : "CLASS", "lbl" : "color hue" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002286", + "meta" : { + "definition" : { + "val" : "Inverse of developmentally preceded by", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally succeeded by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001347", "meta" : { @@ -1546,6 +1632,28 @@ }, "type" : "CLASS", "lbl" : "obsolete relative compatability" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002264", + "meta" : { + "definition" : { + "val" : "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." + } ] + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of or within" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002216", "meta" : { @@ -1824,6 +1932,23 @@ }, "type" : "CLASS", "lbl" : "fan-shaped" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002263", + "meta" : { + "definition" : { + "val" : "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." + } ] + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001361", "meta" : { @@ -1995,6 +2120,32 @@ }, "type" : "CLASS", "lbl" : "punctiform" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002258", + "meta" : { + "definition" : { + "val" : "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "false" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "In general you should not use this relation to make assertions - use one of the more specific relations below this one" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally preceded by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000032", "meta" : { @@ -2176,6 +2327,26 @@ }, "type" : "CLASS", "lbl" : "increased flexibility" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002254", + "meta" : { + "definition" : { + "val" : "x has developmental contribution from y iff x has some part z such that z develops from y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has developmental contribution from" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000443", "meta" : { @@ -2235,6 +2406,24 @@ }, "type" : "CLASS", "lbl" : "polyphasic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002255", + "meta" : { + "definition" : { + "val" : "inverse of has developmental contribution from", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally contributes to" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000446", "meta" : { @@ -2310,6 +2499,45 @@ }, "type" : "CLASS", "lbl" : "borderline intensity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0044464", + "meta" : { + "definition" : { + "val" : "OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms.", + "xrefs" : [ "GOC:jl" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "xrefs" : [ { + "val" : "NIF_Subcellular:sao628508602" + } ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "protoplast", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasExactSynonym", + "val" : "cellular subcomponent", + "xrefs" : [ "NIF_Subcellular:sao628508602" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", + "val" : "CL:0000000" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + } ] + }, + "type" : "CLASS", + "lbl" : "cell part" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000447", "meta" : { @@ -2650,11 +2878,6 @@ "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "flared", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -2949,6 +3172,38 @@ }, "type" : "CLASS", "lbl" : "dystrophic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000057", + "meta" : { + "definition" : { + "val" : "a relation between a process and a continuant, in which the continuant is somehow involved in the process", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this process has participant this input material (or this output material)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this blood coagulation has participant this blood clot" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_participant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has participant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this investigation has participant this investigator" + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:has_participant" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has participant" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002630", "meta" : { @@ -3194,6 +3449,35 @@ }, "type" : "CLASS", "lbl" : "kinked" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000052", + "meta" : { + "definition" : { + "val" : "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this fragility inheres in this vase" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "inheres_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this red color inheres in this apple" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "inheres in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A dependent inheres in its bearer at all times for which the dependent exists." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + } ] + }, + "type" : "PROPERTY", + "lbl" : "inheres in" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000466", "meta" : { @@ -3250,6 +3534,27 @@ }, "type" : "CLASS", "lbl" : "obsolete marked" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002233", + "meta" : { + "definition" : { + "val" : "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "consumes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has input" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000468", "meta" : { @@ -3385,6 +3690,32 @@ }, "type" : "CLASS", "lbl" : "indiscriminate" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000056", + "meta" : { + "definition" : { + "val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this investigator participates in this investigation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this input material (or this output material) participates in this process" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "participates in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "participates_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this blood clot participates in this blood coagulation" + } ] + }, + "type" : "PROPERTY", + "lbl" : "participates in" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000469", "meta" : { @@ -3446,6 +3777,38 @@ }, "type" : "CLASS", "lbl" : "severe increased temperature" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000053", + "meta" : { + "definition" : { + "val" : "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this vase is bearer of this fragility" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is bearer of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "bearer_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "bearer of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this apple is bearer of this red color" + } ] + }, + "type" : "PROPERTY", + "lbl" : "bearer of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001790", "meta" : { @@ -3818,6 +4181,32 @@ }, "type" : "CLASS", "lbl" : "area" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002222", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." + }, { + "pred" : "http://purl.org/dc/terms/source", + "val" : "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "temporally related to" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001324", "meta" : { @@ -3914,6 +4303,53 @@ }, "type" : "CLASS", "lbl" : "actinomorphic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002217", + "meta" : { + "definition" : { + "val" : "x actively participates in y if and only if x participates in y and x realizes some active role", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "agent in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "actively participates in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002218", + "meta" : { + "definition" : { + "val" : "x has participant y if and only if x realizes some active role that inheres in y", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This may be obsoleted and replaced by the original 'has agent' relation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has agent" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'heart development' has active participant some Shh protein" + } ] + }, + "type" : "PROPERTY", + "lbl" : "obsolete has active participant" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000471", "meta" : { @@ -3972,6 +4408,38 @@ }, "type" : "CLASS", "lbl" : "increased amount" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002213", + "meta" : { + "definition" : { + "val" : "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002213" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "positively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "positively_regulates" + } ] + }, + "type" : "PROPERTY", + "lbl" : "positively regulates" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000473", "meta" : { @@ -4044,6 +4512,42 @@ }, "type" : "CLASS", "lbl" : "obsolete threshability value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002215", + "meta" : { + "definition" : { + "val" : "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. ", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/21208450" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has function realized in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "osteoclast SubClassOf 'capable of' some 'bone resorption'" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "RO_0000053 some (RO_0000054 only ?Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20123131" + } ] + }, + "type" : "PROPERTY", + "lbl" : "capable of" }, { "id" : "http://purl.obolibrary.org/obo/pato#towards", "meta" : { @@ -4085,6 +4589,29 @@ }, "type" : "CLASS", "lbl" : "pubescent hair" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002216", + "meta" : { + "definition" : { + "val" : "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has function in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + } ] + }, + "type" : "PROPERTY", + "lbl" : "capable of part of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000408", "meta" : { @@ -4271,6 +4798,56 @@ }, "type" : "CLASS", "lbl" : "branched" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002211", + "meta" : { + "definition" : { + "val" : "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002211" + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "false" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Tanya Berardini" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Hill" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Regulation precludes parthood; the regulatory process may not be within the regulated process." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GO" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "regulates" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "regulates (processual)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" + } ] + }, + "type" : "PROPERTY", + "lbl" : "regulates" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001730", "meta" : { @@ -4312,6 +4889,38 @@ }, "type" : "CLASS", "lbl" : "obsolete shape value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002212", + "meta" : { + "definition" : { + "val" : "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002212" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "negatively_regulates" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "negatively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "negatively regulates" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000885", "meta" : { @@ -4553,6 +5162,35 @@ }, "type" : "CLASS", "lbl" : "obsolete cytoplasmic male sterility value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002202", + "meta" : { + "definition" : { + "val" : "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This is the transitive form of the develops from relation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" + } ] + }, + "type" : "PROPERTY", + "lbl" : "develops from" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000880", "meta" : { @@ -4566,6 +5204,30 @@ }, "type" : "CLASS", "lbl" : "obsolete fertility value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002203", + "meta" : { + "definition" : { + "val" : "inverse of develops from", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" + } ] + }, + "type" : "PROPERTY", + "lbl" : "develops into" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000882", "meta" : { @@ -5510,6 +6172,10 @@ } ] }, "type" : "CLASS" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "type" : "PROPERTY", + "lbl" : "has_obo_namespace" }, { "id" : "http://purl.obolibrary.org/obo/pato#similar_in_magnitude_relative_to", "meta" : { @@ -6289,6 +6955,20 @@ }, "type" : "CLASS", "lbl" : "obsolete flinch reflex value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043549", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.", + "xrefs" : [ "GOC:bf" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of kinase activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001718", "meta" : { @@ -6450,6 +7130,26 @@ }, "type" : "CLASS", "lbl" : "obsolete spinal reflex value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002630", + "meta" : { + "definition" : { + "val" : "Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly negatively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002578" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly negatively regulates" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000863", "meta" : { @@ -6600,6 +7300,45 @@ }, "type" : "CLASS", "lbl" : "obsolete postural reflex value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051174", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.", + "xrefs" : [ "GOC:ai" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of phosphorus metabolism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of phosphorus metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002629", + "meta" : { + "definition" : { + "val" : "Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly positively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002578" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly positively regulates" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001729", "meta" : { @@ -6917,6 +7656,35 @@ }, "type" : "CLASS", "lbl" : "obsolete relative neurobehavioral function value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040023", + "meta" : { + "definition" : { + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body.", + "xrefs" : [ "https://en.wiktionary.org/wiki/distomedial" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "distomedial", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "disto-medial orientation", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-19T21:54:33Z" + } ] + }, + "type" : "CLASS", + "lbl" : "distomedial orientation" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000804", "meta" : { @@ -6943,6 +7711,28 @@ }, "type" : "CLASS", "lbl" : "obsolete tactile response value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040024", + "meta" : { + "definition" : { + "val" : "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] + }, + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "paired", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0001-5208-3432" + } ] + }, + "type" : "CLASS", + "lbl" : "bilaterally paired" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000806", "meta" : { @@ -6956,6 +7746,23 @@ }, "type" : "CLASS", "lbl" : "obsolete olfactory value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040021", + "meta" : { + "definition" : { + "val" : "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism..", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0001-5208-3432" + } ] + }, + "type" : "CLASS", + "lbl" : "unpaired" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000805", "meta" : { @@ -6969,6 +7776,26 @@ }, "type" : "CLASS", "lbl" : "obsolete auditory value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040022", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-19T21:49:07Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0001-5208-3432" + } ] + }, + "type" : "CLASS", + "lbl" : "flared" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000808", "meta" : { @@ -7003,7 +7830,7 @@ "xrefs" : [ "NCIT:C3824" ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "pred" : "http://purl.org/dc/elements/1.1/creator", "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7025,6 +7852,31 @@ }, "type" : "CLASS", "lbl" : "obsolete taste value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040026", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being marked by interruptions or gaps.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "structurally interrupted", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is intended for use for terms such as MP:0010461 discontinuous pulmonary artery and MP:0004157 interrupted aortic arch." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "structurally discontinuous" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000800", "meta" : { @@ -7064,6 +7916,34 @@ }, "type" : "CLASS", "lbl" : "obsolete motor function value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016740", + "meta" : { + "definition" : { + "val" : "Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.", + "xrefs" : [ "ISBN:0198506732" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], + "xrefs" : [ { + "val" : "Reactome:R-HSA-5668414" + }, { + "val" : "Reactome:R-HSA-8868783" + }, { + "val" : "Reactome:R-HSA-1483089" + }, { + "val" : "Reactome:R-HSA-6787403" + }, { + "val" : "Reactome:R-HSA-1483186" + }, { + "val" : "EC:2" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + } ] + }, + "type" : "CLASS", + "lbl" : "transferase activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0040020", "meta" : { @@ -7136,6 +8016,41 @@ }, "type" : "CLASS", "lbl" : "obsolete relative odor acuity value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005622", + "meta" : { + "definition" : { + "val" : "The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.", + "xrefs" : [ "ISBN:0198506732" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "xrefs" : [ { + "val" : "Wikipedia:Intracellular" + } ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "nucleocytoplasm", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "protoplast", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasExactSynonym", + "val" : "internal to cell", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "protoplasm", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "intracellular" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000819", "meta" : { @@ -7149,6 +8064,29 @@ }, "type" : "CLASS", "lbl" : "obsolete quantity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005623", + "meta" : { + "definition" : { + "val" : "The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.", + "xrefs" : [ "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "xrefs" : [ { + "val" : "NIF_Subcellular:sao1813327414" + }, { + "val" : "Wikipedia:Cell_(biology)" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "cell and encapsulating structures" + } ] + }, + "type" : "CLASS", + "lbl" : "cell" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000818", "meta" : { @@ -8752,6 +9690,37 @@ }, "type" : "PROPERTY", "lbl" : "has_dividend_entity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051100", + "meta" : { + "definition" : { + "val" : "Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.", + "xrefs" : [ "GOC:ai" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "down regulation of binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of binding", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of binding", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of binding" }, { "id" : "http://purl.obolibrary.org/obo/pato#inversely_associated_with", "meta" : { @@ -9708,6 +10677,10 @@ }, "type" : "CLASS", "lbl" : "herniated out of" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", + "type" : "PROPERTY", + "lbl" : "has_obo_format_version" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0015009", "meta" : { @@ -9789,6 +10762,166 @@ }, "type" : "CLASS", "lbl" : "bicornuate" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043085", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the activity of an enzyme.", + "xrefs" : [ "GOC:ebc", "GOC:jl", "GOC:tb", "GOC:vw" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "xrefs" : [ { + "val" : "MIPS_funcat:18.02.01.01" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "activation of enzyme activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of enzyme activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "positive regulation of enzyme activity", + "xrefs" : [ "GOC:tb" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "upregulation of metalloenzyme activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of enzyme activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "positive regulation of metalloenzyme activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of metalloenzyme activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of metalloenzyme activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "up regulation of metalloenzyme activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of enzyme activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "up-regulation of metalloenzyme activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of enzyme activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0048554" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of catalytic activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0004047", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-03-13T23:55:19Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002418" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of or within, positive effect" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0004046", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : 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Excludes the plasma membrane.", + "xrefs" : [ "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "xrefs" : [ { + "val" : "Wikipedia:Organelle" + }, { + "val" : "NIF_Subcellular:sao1539965131" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "organelle" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000373", "meta" : { @@ -12468,6 +14015,21 @@ }, "type" : "CLASS", "lbl" : "obsolete quantitative value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043229", + "meta" : { + "definition" : { + "val" : "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.", + "xrefs" : [ "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "intracellular organelle" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000376", "meta" : { @@ -12659,6 +14221,26 @@ } ] }, "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043231", + "meta" : { + "definition" : { + "val" : "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.", + "xrefs" : [ "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "intracellular membrane-enclosed organelle", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "intracellular membrane-bounded organelle" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000381", "meta" : { @@ -12913,6 +14495,16 @@ }, "type" : "CLASS", "lbl" : "obsolete heat insentive" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000412", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "imported from" }, { "id" : "http://purl.obolibrary.org/obo/pato#relational_slim", "meta" : { @@ -12932,6 +14524,27 @@ }, "type" : "PROPERTY", "lbl" : "has_dividend_quality" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0100001", + "type" : "PROPERTY", + "lbl" : "term replaced by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002385", + "meta" : { + "definition" : { + "val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to developmentally contribute to" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001248", "meta" : { @@ -12975,6 +14588,23 @@ }, "type" : "CLASS", "lbl" : "dark green" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002387", + "meta" : { + "definition" : { + "val" : "x has the potential to develop into y iff x develops into y or if x is capable of developing into y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to develop into" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001246", "meta" : { @@ -12990,6 +14620,23 @@ }, "type" : "CLASS", "lbl" : "light brown" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002388", + "meta" : { + "definition" : { + "val" : "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to directly develop into" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001247", "meta" : { @@ -13005,6 +14652,23 @@ }, "type" : "CLASS", "lbl" : "light cyan" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002384", + "meta" : { + "definition" : { + "val" : "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has developmental potential involving" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000392", "meta" : { @@ -13250,6 +14914,20 @@ }, "type" : "CLASS", "lbl" : "light blue" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000000", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "anatomical entity" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "type" : "PROPERTY", + "lbl" : "has_alternative_id" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000390", "meta" : { @@ -13263,6 +14941,16 @@ }, "type" : "CLASS", "lbl" : "obsolete extreme" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000003", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "connected anatomical structure" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002508", "meta" : { @@ -13305,6 +14993,16 @@ }, "type" : "CLASS", "lbl" : "hexagonal" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000006", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "material anatomical entity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000323", "meta" : { @@ -13891,6 +15589,79 @@ }, "type" : "CLASS", "lbl" : "increased resistance to" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0032991", + "meta" : { + "definition" : { + "val" : "A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.", + "xrefs" : [ "GOC:dos", "GOC:mah" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "protein complex", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "protein containing complex", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "protein-protein complex", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "macromolecule complex", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "macromolecular complex", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0043234" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole." + } ] + }, + "type" : "CLASS", + "lbl" : "protein-containing complex" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016020", + "meta" : { + "definition" : { + "val" : "A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.", + "xrefs" : [ "GOC:dos", "GOC:mah", "ISBN:0815316194" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "xrefs" : [ { + "val" : "Wikipedia:Biological_membrane" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "membrane" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000014", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "cell part (CARO)" + } ] + }, + "type" : "CLASS", + "lbl" : "cell part" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002519", "meta" : { @@ -14540,6 +16311,21 @@ }, "type" : "CLASS", "lbl" : "mesiolateral orientation" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002352", + "meta" : { + "definition" : { + "val" : "inverse of has input", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "input of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000345", "meta" : { @@ -14894,6 +16680,10 @@ }, "type" : "CLASS", "lbl" : "decreased susceptibility toward" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "type" : "PROPERTY", + "lbl" : "shorthand" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001673", "meta" : { @@ -15564,6 +17354,24 @@ }, "type" : "CLASS", "lbl" : "obsolete electrolyte composition value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002334", + "meta" : { + "definition" : { + "val" : "inverse of regulates", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "regulated by (processual)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "regulated by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002531", "meta" : { @@ -15699,6 +17507,21 @@ }, "type" : "CLASS", "lbl" : "magnetic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002335", + "meta" : { + "definition" : { + "val" : "inverse of negatively regulates", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "negatively regulated by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001682", "meta" : { @@ -15727,6 +17550,21 @@ }, "type" : "CLASS", "lbl" : "obsolete protein composition value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002336", + "meta" : { + "definition" : { + "val" : "inverse of positively regulates", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "positively regulated by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000353", "meta" : { @@ -15908,6 +17746,29 @@ }, "type" : "CLASS", "lbl" : "obsolete impaired" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002331", + "meta" : { + "definition" : { + "val" : "c involved_in p if and only if c enables some process p', and p' is part of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "enables part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "actively involved in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Involved_in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001612", "meta" : { @@ -15974,6 +17835,20 @@ }, "type" : "CLASS", "lbl" : "passive" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002333", + "meta" : { + "definition" : { + "val" : "inverse of enables", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "enabled by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001615", "meta" : { @@ -16179,6 +18054,111 @@ }, "type" : "CLASS", "lbl" : "obsolete decreased consumption" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002327", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is catalyzing" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "a particular instances of akt-2 enables some instance of protein kinase activity" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "catalyzes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is executing" + } ] + }, + "type" : "PROPERTY", + "lbl" : "enables" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002328", + "meta" : { + "definition" : { + "val" : "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This is a grouping relation that collects relations used for the purpose of connecting structure and function" + } ] + }, + "type" : "PROPERTY", + "lbl" : "functionally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002329", + "meta" : { + "definition" : { + "val" : "this relation holds between c and p when c is part of some c', and c' is capable of p.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "false" + } ] + }, + "type" : "PROPERTY", + "lbl" : "part of structure that is capable of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002323", + "meta" : { + "definition" : { + "val" : "A mereological relationship or a topological relationship", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" + } ] + }, + "type" : "PROPERTY", + "lbl" : "mereotopologically related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002324", + "meta" : { + "definition" : { + "val" : "A relationship that holds between entities participating in some developmental process (GO:0032502)", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally related to" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000761", "meta" : { @@ -16607,6 +18587,32 @@ }, "type" : "CLASS", "lbl" : "indifference" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002314", + "meta" : { + "definition" : { + "val" : "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + } ] + }, + "type" : "PROPERTY", + "lbl" : "inheres in part of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000771", "meta" : { @@ -17043,6 +19049,22 @@ }, "type" : "CLASS", "lbl" : "obsolete absolute age value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002305", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y" + }, { + "pred" : "http://purl.org/dc/terms/creator", + "val" : "cjm" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of, negative effect" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000781", "meta" : { @@ -17097,6 +19119,22 @@ }, "type" : "CLASS", "lbl" : "obsolete digestive function value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002304", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y" + }, { + "pred" : "http://purl.org/dc/terms/creator", + "val" : "cjm" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of, positive effect" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000782", "meta" : { @@ -17110,6 +19148,35 @@ }, "type" : "CLASS", "lbl" : "obsolete defensive function value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0098796", + "meta" : { + "definition" : { + "val" : "Any protein complex that is part of a membrane.", + "xrefs" : [ "GOC:dos" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "membrane protein complex" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0098797", + "meta" : { + "definition" : { + "val" : "Any protein complex that is part of the plasma membrane.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "plasma membrane protein complex" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000319", "meta" : { @@ -17630,6 +19697,24 @@ }, "type" : "CLASS", "lbl" : "obsolete high yield" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0007154", + "meta" : { + "definition" : { + "val" : "Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", + "xrefs" : [ "GOC:mah" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "xrefs" : [ { + "val" : "Wikipedia:Cell_signaling" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "cell communication" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000722", "meta" : { @@ -17669,6 +19754,86 @@ }, "type" : "CLASS", "lbl" : "obsolete low yield" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0042325", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule.", + "xrefs" : [ "GOC:jl" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of phosphorylation" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0042327", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule.", + "xrefs" : [ "GOC:jl" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "up regulation of phosphorylation", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of phosphorylation", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of phosphorylation", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of phosphorylation", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of phosphorylation", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of phosphorylation" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0042326", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule.", + "xrefs" : [ "GOC:jl" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "downregulation of phosphorylation", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of phosphorylation", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of phosphorylation", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of phosphorylation", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of phosphorylation" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000738", "meta" : { @@ -17773,6 +19938,49 @@ }, "type" : "CLASS", "lbl" : "obsolete piloerection value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0007165", + "meta" : { + "definition" : { + "val" : "The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.", + "xrefs" : [ "GOC:go_curators", "GOC:mtg_signaling_feb11" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_aspergillus" ], + "xrefs" : [ { + "val" : "Wikipedia:Signal_transduction" + }, { + "val" : "MIPS_funcat:30" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "signalling cascade", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "signalling pathway", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "signaling cascade", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "signaling pathway", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that signal transduction is defined broadly to include a ligand interacting with a receptor, downstream signaling steps and a response being triggered. A change in form of the signal in every step is not necessary. Note that in many cases the end of this process is regulation of the initiation of transcription. Note that specific transcription factors may be annotated to this term, but core/general transcription machinery such as RNA polymerase should not." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0023033" + } ] + }, + "type" : "CLASS", + "lbl" : "signal transduction" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000736", "meta" : { @@ -18240,6 +20448,198 @@ }, "type" : "CLASS", "lbl" : "obsolete learning and memory value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0050789", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.", + "xrefs" : [ "GOC:ai", "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of physiological process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0050791" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of biological process" + }, { + "id" : "http://purl.obolibrary.org/obo/CL_0000000", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/cl.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "cell" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0050794", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.", + "xrefs" : [ "GOC:go_curators" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of cellular physiological process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0051244" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of cellular process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_1900121", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor.", + "xrefs" : [ "GOC:TermGenie", "GOC:signaling" ] + }, + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] 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"negative regulation of receptor binding" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_1900120", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor.", + "xrefs" : [ "GOC:TermGenie", "GOC:signaling" ] + }, + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "regulation of receptor ligand", + "xrefs" : [ "GOC:TermGenie" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "bf" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-02-22T11:40:53Z" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of receptor binding" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_1900122", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor.", + "xrefs" : [ "GOC:TermGenie", "GOC:signaling" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "upregulation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-02-22T11:41:00Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "bf" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of receptor binding" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", + "type" : "PROPERTY", + "lbl" : "has_related_synonym" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0050790", + "meta" : { + "definition" : { + "val" : "Any process that modulates the activity of an enzyme.", + "xrefs" : [ "GOC:ai", "GOC:ebc", "GOC:vw" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "xrefs" : [ { + "val" : "MIPS_funcat:18.02.01" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "regulation of metalloenzyme activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "regulation of enzyme activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0048552" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of catalytic activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000705", "meta" : { @@ -18418,6 +20818,72 @@ }, "type" : "CLASS", "lbl" : "obsolete threshold value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0032092", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of protein binding.", + "xrefs" : [ "GOC:mah" ] + }, + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of protein binding", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of protein binding" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0032091", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding.", + "xrefs" : [ "GOC:mah" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "downregulation of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of protein binding", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of protein binding" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000716", "meta" : { @@ -18491,6 +20957,21 @@ }, "type" : "CLASS", "lbl" : "viable" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0004872", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/GO_0038023" + } ] + }, + "type" : "CLASS" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000710", "meta" : { @@ -18504,6 +20985,50 @@ }, "type" : "CLASS", "lbl" : "obsolete time value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0048018", + "meta" : { + "definition" : { + "val" : "The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands).", + "xrefs" : [ "GOC:kv", "GOC:molecular_function_refactoring", "GOC:pdt" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "receptor agonist activity", + "xrefs" : [ "GOC:molecular_function_refactoring" ] + }, { + "pred" : "hasExactSynonym", + "val" : "signaling molecule", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "signaling receptor ligand activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "vitamin D receptor activator activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-13T04:51:59Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Definition discussed in https://github.com/geneontology/go-ontology/issues/14220" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "midori" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0071884" + } ] + }, + "type" : "CLASS", + "lbl" : "receptor ligand activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000712", "meta" : { @@ -18767,6 +21292,21 @@ }, "type" : "CLASS", "lbl" : "absorption wavelength" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0098772", + "meta" : { + "definition" : { + "val" : "A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators.", + "xrefs" : [ "GOC:dos", "GOC:pt" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + } ] + }, + "type" : "CLASS", + "lbl" : "molecular function regulator" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002076", "meta" : { @@ -19301,6 +21841,71 @@ }, "type" : "CLASS", "lbl" : "neoplastic, malignant" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0035556", + "meta" : { + "definition" : { + "val" : "The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.", + "xrefs" : [ "GOC:bf", "GOC:jl", "GOC:signaling", "ISBN:3527303782" ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "intracellular signaling cascade", + "xrefs" : [ "GOC:signaling" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "signal transduction via intracellular signaling cascade", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "intracellular signal transduction pathway", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "signal transmission via intracellular cascade", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "intracellular protein kinase cascade", + "xrefs" : [ "GOC:signaling" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "protein kinase cascade", + "xrefs" : [ "GOC:signaling" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "intracellular signaling pathway", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "intracellular signaling chain", + "xrefs" : [ "ISBN:3527303782" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-05-14T01:14:37Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0023034" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "rfoulger" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0007242" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0007243" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0023013" + } ] + }, + "type" : "CLASS", + "lbl" : "intracellular signal transduction" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002090", "meta" : { @@ -19926,6 +22531,20 @@ }, "type" : "CLASS", "lbl" : "specificity to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001900", + "meta" : { + "definition" : { + "val" : "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/ROAndTime" + } ] + }, + "type" : "PROPERTY", + "lbl" : "temporal interpretation" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001183", "meta" : { @@ -19960,6 +22579,16 @@ }, "type" : "CLASS", "lbl" : "upturned" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001901", + "meta" : { + "definition" : { + "val" : "\n\n## Elucidation\n\nThis is used when the statement/axiom is assumed to hold true 'eternally'\n\n## How to interpret (informal)\n\nFirst the \"atemporal\" FOL is derived from the OWL using the standard\ninterpretation. This axiom is temporalized by embedding the axiom\nwithin a for-all-times quantified sentence. The t argument is added to\nall instantiation predicates and predicates that use this relation.\n\n## Example\n\n Class: nucleus\n SubClassOf: part_of some cell\n\n forall t :\n forall n :\n instance_of(n,Nucleus,t)\n implies\n exists c :\n instance_of(c,Cell,t)\n part_of(n,c,t)\n\n## Notes\n\nThis interpretation is *not* the same as an at-all-times relation\n\n", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "axiom holds for all times" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001184", "meta" : { @@ -22406,6 +25035,46 @@ }, "type" : "CLASS", "lbl" : "poorly ossified" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0044092", + "meta" : { + "definition" : { + "val" : "Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.", + "xrefs" : [ "GO:jl" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-04-21T04:07:27Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "jane" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of molecular function" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0044093", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.", + "xrefs" : [ "GO:jl" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-04-21T04:11:06Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "jane" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of molecular function" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002018", "meta" : { @@ -23316,6 +25985,56 @@ }, "type" : "CLASS", "lbl" : "having decreased processual parts" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0009892", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", + "xrefs" : [ "GOC:go_curators" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "down regulation of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of organismal metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "negative regulation of organismal metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "negative regulation of metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "negative regulation of multicellular organismal metabolic process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044252" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of metabolic process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001571", "meta" : { @@ -23331,6 +26050,64 @@ }, "type" : "CLASS", "lbl" : "dilated" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0009893", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", + "xrefs" : [ "GOC:go_curators" ] + }, + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "positive regulation of organismal metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of organismal metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "positive regulation of multicellular organismal metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "positive regulation of metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "up-regulation of organismal metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of metabolic process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044253" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of metabolic process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000240", "meta" : { @@ -24224,6 +27001,130 @@ }, "type" : "CLASS", "lbl" : "obsolete vibrissae reflex" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0019222", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", + "xrefs" : [ "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "regulation of organismal metabolic process", + "xrefs" : [ "GOC:tb" ] + }, { + "pred" : "hasExactSynonym", + "val" : "regulation of metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "regulation of multicellular organismal metabolic process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044246" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0019220", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates.", + "xrefs" : [ "GOC:go_curators" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of phosphate metabolism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of phosphate metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0031324", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.", + "xrefs" : [ "GOC:mah" ] + }, + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "negative regulation of cellular metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of cellular metabolic process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of cellular metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0031325", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.", + "xrefs" : [ "GOC:mah" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "upregulation of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "positive regulation of cellular metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of cellular metabolic process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of cellular metabolic process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001116", "meta" : { @@ -24907,6 +27808,25 @@ }, "type" : "CLASS", "lbl" : "unornamented" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0031323", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.", + "xrefs" : [ "GOC:mah" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of cellular metabolism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of cellular metabolic process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002458", "meta" : { @@ -24943,6 +27863,22 @@ }, "type" : "CLASS", "lbl" : "male fertility" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002022", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:24Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly regulated by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001127", "meta" : { @@ -24990,6 +27926,23 @@ }, "type" : "CLASS", "lbl" : "obsolete hybrid fertility" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002023", + "meta" : { + "definition" : { + "val" : "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:38Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly negatively regulated by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001128", "meta" : { @@ -25037,6 +27990,23 @@ }, "type" : "CLASS", "lbl" : "inflorescence-like" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002024", + "meta" : { + "definition" : { + "val" : "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly positively regulated by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002457", "meta" : { @@ -25058,6 +28028,26 @@ }, "type" : "CLASS", "lbl" : "leaf-like" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002025", + "meta" : { + "definition" : { + "val" : "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-22T14:14:36Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has effector activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001126", "meta" : { @@ -25118,6 +28108,23 @@ }, "type" : "CLASS", "lbl" : "firm" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002019", + "meta" : { + "definition" : { + "val" : "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-07-19T17:30:36Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has ligand" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002451", "meta" : { @@ -25193,6 +28200,26 @@ }, "type" : "CLASS", "lbl" : "obsolete relative neurobehavioral function" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002015", + "meta" : { + "definition" : { + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:17Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has positive regulatory component activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002454", "meta" : { @@ -25302,6 +28329,22 @@ }, "type" : "CLASS", "lbl" : "obsolete power value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002017", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:44:33Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B." + } ] + }, + "type" : "PROPERTY", + "lbl" : "has component activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002452", "meta" : { @@ -25341,6 +28384,23 @@ }, "type" : "CLASS", "lbl" : "female fertility" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002018", + "meta" : { + "definition" : { + "val" : "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:49:21Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has component process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000276", "meta" : { @@ -25558,6 +28618,23 @@ }, "type" : "CLASS", "lbl" : "obsolete absolute locomotor_activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002013", + "meta" : { + "definition" : { + "val" : "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:30:46Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has regulatory component activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000203", "meta" : { @@ -25604,6 +28681,26 @@ }, "type" : "CLASS", "lbl" : "obsolete relative rate value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002014", + "meta" : { + "definition" : { + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:01Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has negative regulatory component activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001538", "meta" : { @@ -25949,6 +29046,29 @@ }, "type" : "CLASS", "lbl" : "obsolete neurobehavioral function" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0044237", + "meta" : { + "definition" : { + "val" : "The chemical reactions and pathways by which individual cells transform chemical substances.", + "xrefs" : [ "GOC:go_curators" ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "intermediary metabolism", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasExactSynonym", + "val" : "cellular metabolism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "cellular metabolic process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001546", "meta" : { @@ -26161,6 +29281,16 @@ }, "type" : "CLASS", "lbl" : "obsolete heart rate" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002481", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is kinase activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000219", "meta" : { @@ -26227,6 +29357,26 @@ }, "type" : "CLASS", "lbl" : "obsolete repair function" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0120025", + "meta" : { + "definition" : { + "val" : "A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon.", + "xrefs" : [ "GOC:krc" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-03-21T17:26:07Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "kchris" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "plasma membrane bounded cell projection" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000691", "meta" : { @@ -26371,6 +29521,21 @@ }, "type" : "CLASS", "lbl" : "heterochronic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002479", + "meta" : { + "definition" : { + "val" : "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has part that occurs in" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0010003", "meta" : { @@ -26513,6 +29678,20 @@ } ] }, "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0043393", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of protein binding.", + "xrefs" : [ "GOC:go_curators" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of protein binding" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002409", "meta" : { @@ -26572,6 +29751,30 @@ } ] }, "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002473", + "meta" : { + "definition" : { + "val" : "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + } ] + }, + "type" : "PROPERTY", + "lbl" : "composed primarily of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002403", "meta" : { @@ -27125,6 +30328,32 @@ }, "type" : "CLASS", "lbl" : "increased sensitivity of a process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005488", + "meta" : { + "definition" : { + "val" : "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.", + "xrefs" : [ "GOC:ceb", "GOC:mah", "ISBN:0198506732" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], + "xrefs" : [ { + "val" : "Wikipedia:Binding_(molecular)" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "ligand", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children." + } ] + }, + "type" : "CLASS", + "lbl" : "binding" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002414", "meta" : { @@ -27247,6 +30476,19 @@ }, "type" : "CLASS", "lbl" : "dark yellow brown" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002464", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." + } ] + }, + "type" : "PROPERTY", + "lbl" : "helper property (not for use in curation)" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001565", "meta" : { @@ -27677,6 +30919,10 @@ }, "type" : "CLASS", "lbl" : "decreased mass" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0001010", + "type" : "CLASS", + "lbl" : "organism or virus or viroid" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000649", "meta" : { @@ -27967,6 +31213,28 @@ }, "type" : "CLASS", "lbl" : "obstructed" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002450", + "meta" : { + "definition" : { + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly increases activity of", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "activates" + } ] + }, + "type" : "PROPERTY", + "lbl" : "activity directly positively regulates activity of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001977", "meta" : { @@ -28002,6 +31270,47 @@ }, "type" : "CLASS", "lbl" : "necrotic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002448", + "meta" : { + "definition" : { + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly controls", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "activity directly regulates activity of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002449", + "meta" : { + "definition" : { + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly decreases activity of", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "inhibits" + } ] + }, + "type" : "PROPERTY", + "lbl" : "activity directly negatively regulates activity of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001970", "meta" : { @@ -28052,6 +31361,70 @@ }, "type" : "CLASS", "lbl" : "dysplastic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002447", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Axiomatization to GO to be added later" + } ] + }, + "type" : "PROPERTY", + "lbl" : "phosphorylates" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000116", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "editor note" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000117", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "term editor" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000114", + "type" : "PROPERTY", + "lbl" : "has curation status" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000115", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "definition" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000112", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "example of usage" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000111", + "type" : "PROPERTY", + "lbl" : "editor preferred term" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001509", "meta" : { @@ -28097,6 +31470,26 @@ } ] }, "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000118", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "alternative term" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000119", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "definition source" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001985", "meta" : { @@ -28465,6 +31858,41 @@ }, "type" : "CLASS", "lbl" : "auriculate" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002434", + "meta" : { + "definition" : { + "val" : "A relationship that holds between two entities in which the processes executed by the two entities are causally connected.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "in pairwise interaction with", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0914" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Considering relabeling as 'pairwise interacts with'" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." + }, { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." + } ] + }, + "type" : "PROPERTY", + "lbl" : "interacts with" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001982", "meta" : { @@ -28518,6 +31946,32 @@ }, "type" : "CLASS", "lbl" : "digitate" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002436", + "meta" : { + "definition" : { + "val" : "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "molecularly binds with" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/ECO_0000353" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0915" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "binds" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecularly interacts with" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000650", "meta" : { @@ -28533,6 +31987,16 @@ } ] }, "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000125", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "pending final vetting" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001518", "meta" : { @@ -28664,6 +32128,23 @@ }, "type" : "CLASS", "lbl" : "decreased amount" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002430", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in negative regulation of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000663", "meta" : { @@ -28705,6 +32186,26 @@ }, "type" : "CLASS", "lbl" : "obsolete energy_quantity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002431", + "meta" : { + "definition" : { + "val" : "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "involved in or reguates" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "OWL does not allow defining object properties via a Union" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in or involved in regulation of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001510", "meta" : { @@ -28799,6 +32300,34 @@ }, "type" : "CLASS", "lbl" : "non-functional" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002432", + "meta" : { + "definition" : { + "val" : "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.", + "xrefs" : [ "GOC:cjm", "GOC:dos" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "enables activity in", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes activity in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A protein that enables activity in a cytosol." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is active in" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001995", "meta" : { @@ -28954,6 +32483,238 @@ }, "type" : "CLASS", "lbl" : "obsolete concentration_unit" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0008152", + "meta" : { + "definition" : { + "val" : "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.", + "xrefs" : [ "GOC:go_curators", "ISBN:0198547684" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "xrefs" : [ { + "val" : "MIPS_funcat:01" + }, { + "val" : "Wikipedia:Metabolism" + } ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "single-organism metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "metabolism resulting in cell growth", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "metabolic process resulting in cell growth", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "multicellular organism metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "metabolism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044710" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "janelomax" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044236" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-10-17T15:46:40Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002427", + "meta" : { + "definition" : { + "val" : "inverse of causally upstream of or within", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally downstream of or within" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0045936", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates.", + "xrefs" : [ "GOC:go_curators" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "downregulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "negative regulation of phosphate metabolism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of phosphate metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0008150", + "meta" : { + "definition" : { + "val" : "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.", + "xrefs" : [ "GOC:pdt" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_pombe", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_candida" ], + "xrefs" : [ { + "val" : "Wikipedia:Biological_process" + } ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "single organism process", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "single-organism process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "physiological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "biological process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-09-19T15:05:24Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code \"no data\" (ND), is used to indicate this." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044699" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "janelomax" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0007582" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0000004" + } ] + }, + "type" : "CLASS", + "lbl" : "biological_process" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002428", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some p' and p' regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002429", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some p' and p' positively regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in positive regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0045937", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates.", + "xrefs" : [ "GOC:go_curators" ] + }, + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "activation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "positive regulation of phosphate metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of phosphate metabolic process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of phosphate metabolic process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001992", "meta" : { @@ -29294,6 +33055,31 @@ }, "type" : "CLASS", "lbl" : "ultrasonic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002418", + "meta" : { + "definition" : { + "val" : "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "influences (processual)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of or within" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000671", "meta" : { @@ -29307,6 +33093,43 @@ }, "type" : "CLASS", "lbl" : "obsolete water value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002411", + "meta" : { + "definition" : { + "val" : "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002412", + "meta" : { + "definition" : { + "val" : "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately causally upstream of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001520", "meta" : { @@ -29584,6 +33407,29 @@ }, "type" : "CLASS", "lbl" : "increased width" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002410", + "meta" : { + "definition" : { + "val" : "This relation groups causal relations between material entities and causal relations between processes", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally related to" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000602", "meta" : { @@ -29701,6 +33547,36 @@ }, "type" : "CLASS", "lbl" : "opposite" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002404", + "meta" : { + "definition" : { + "val" : "inverse of upstream of", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally downstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002405", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately causally downstream of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000617", "meta" : { @@ -30163,6 +34039,10 @@ }, "type" : "CLASS", "lbl" : "defasciculated" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref", + "type" : "PROPERTY", + "lbl" : "database_cross_reference" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000620", "meta" : { @@ -30931,6 +34811,137 @@ }, "type" : "CLASS", "lbl" : "interdigitated" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000589", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "OBO foundry unique label" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0048585", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.", + "xrefs" : [ "GOC:jid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of response to stimulus", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of response to stimulus" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0048584", + "meta" : { + "definition" : { + "val" : "Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.", + "xrefs" : [ "GOC:jid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "upregulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of response to stimulus", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of response to stimulus" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0048583", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.", + "xrefs" : [ "GOC:jid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of response to stimulus" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0003674", + "meta" : { + "definition" : { + "val" : "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.", + "xrefs" : [ "GOC:pdt" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecular function", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "molecular process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0005554" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code \"no data\" (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex." + } ] + }, + "type" : "CLASS", + "lbl" : "molecular_function" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0005019", "meta" : { @@ -31294,6 +35305,10 @@ }, "type" : "CLASS", "lbl" : "back" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#consider", + "type" : "PROPERTY", + "lbl" : "consider" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001902", "meta" : { @@ -31892,6 +35907,111 @@ }, "type" : "CLASS", "lbl" : "obsolete flux value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051338", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.", + "xrefs" : [ "EC:2.-.-.-", "GOC:ai" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "transferase regulator", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead." + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of transferase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051347", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor.", + "xrefs" : [ "GOC:ai" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "activation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "transferase activator", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of transferase activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead." + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of transferase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051348", + "meta" : { + "definition" : { + "val" : "Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor.", + "xrefs" : [ "GOC:ai" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "transferase inhibitor", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of transferase activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead." + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of transferase activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0005008", "meta" : { @@ -32510,6 +36630,52 @@ }, "type" : "CLASS", "lbl" : "obsolete relative susceptibility" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0006796", + "meta" : { + "definition" : { + "val" : "The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid.", + "xrefs" : [ "GOC:ai" ] + }, + "xrefs" : [ { + "val" : "MIPS_funcat:01.04" + } ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "phosphate metabolism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "phosphate-containing compound metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0006793", + "meta" : { + "definition" : { + "val" : "The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4).", + "xrefs" : [ "GOC:ai" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "phosphorus metabolism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "phosphorus metabolic process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002395", "meta" : { @@ -32686,6 +36852,45 @@ }, "type" : "CLASS", "lbl" : "anteromedially rotated" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0048519", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.", + "xrefs" : [ "GOC:jid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "down regulation of biological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of biological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of biological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "negative regulation of physiological process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of biological process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0043118" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of biological process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001069", "meta" : { @@ -32712,6 +36917,49 @@ }, "type" : "CLASS", "lbl" : "obsolete absolute stiffness" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0048518", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.", + "xrefs" : [ "GOC:jid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "up regulation of biological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of biological process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of biological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of biological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "positive regulation of physiological process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of biological process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0043119" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of biological process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002397", "meta" : { @@ -32808,6 +37056,10 @@ }, "type" : "CLASS", "lbl" : "obsolete absolute efficiency" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym", + "type" : "PROPERTY", + "lbl" : "has_narrow_synonym" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002392", "meta" : { @@ -32863,6 +37115,86 @@ }, "type" : "CLASS", "lbl" : "radius" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0048523", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.", + "xrefs" : [ "GOC:jid" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "downregulation of cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "negative regulation of cellular physiological process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0051243" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of cellular process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0048522", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.", + "xrefs" : [ "GOC:jid" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "up regulation of cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "positive regulation of cellular physiological process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of cellular process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0051242" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of cellular process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001075", "meta" : { @@ -33240,6 +37572,29 @@ }, "type" : "CLASS", "lbl" : "obsolete physical measure value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002090", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/BFO_0000063" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "ends_at_start_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "meets" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately precedes" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001017", "meta" : { @@ -33444,6 +37799,24 @@ }, "type" : "CLASS", "lbl" : "obsolete absolute occurence value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051716", + "meta" : { + "definition" : { + "val" : "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.", + "xrefs" : [ "GOC:bf", "GOC:jl" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "cellular response to stimulus" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001019", "meta" : { @@ -34269,6 +38642,36 @@ }, "type" : "CLASS", "lbl" : "obsolete physical quantity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002086", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "ends after" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002087", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "starts_at_end_of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately preceded by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002351", "meta" : { @@ -35616,6 +40019,91 @@ }, "type" : "CLASS", "lbl" : "obsolete body tone" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0050896", + "meta" : { + "definition" : { + "val" : "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.", + "xrefs" : [ "GOC:ai", "GOC:bf" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_agr" ], + "xrefs" : [ { + "val" : "MIPS_funcat:34.11" + } ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "physiological response to stimulus", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0051869" + } ] + }, + "type" : "CLASS", + "lbl" : "response to stimulus" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005886", + "meta" : { + "definition" : { + "val" : "The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.", + "xrefs" : [ "ISBN:0716731363" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], + "xrefs" : [ { + "val" : "NIF_Subcellular:sao1663586795" + }, { + "val" : "Wikipedia:Cell_membrane" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "inner endospore membrane", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "plasmalemma", + "xrefs" : [ ] + }, { + "pred" : "hasBroadSynonym", + "val" : "juxtamembrane", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "cellular membrane", + "xrefs" : [ "NIF_Subcellular:sao6433132645" ] + }, { + "pred" : "hasExactSynonym", + "val" : "cell membrane", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "bacterial inner membrane", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "cytoplasmic membrane", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "plasma membrane lipid bilayer", + "xrefs" : [ "GOC:mah" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0005904" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "plasma membrane" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001048", "meta" : { @@ -35864,7 +40352,7 @@ } ] }, "type" : "CLASS", - "lbl" : "grand multi[arous" + "lbl" : "grand multiparous" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000195", "meta" : { @@ -38586,6 +43074,27 @@ }, "type" : "CLASS", "lbl" : "obsolete solid substance" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0071944", + "meta" : { + "definition" : { + "val" : "The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures.", + "xrefs" : [ "GOC:mah" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "midori" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-04T01:51:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "cell periphery" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001474", "meta" : { @@ -38704,6 +43213,20 @@ }, "type" : "CLASS", "lbl" : "normal distance" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051098", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.", + "xrefs" : [ "GOC:ai" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of binding" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045010", "meta" : { @@ -38725,6 +43248,41 @@ }, "type" : "CLASS", "lbl" : "normal concentration" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051099", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.", + "xrefs" : [ "GOC:ai" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "up regulation of binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of binding", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of binding", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of binding", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of binding" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045026", "meta" : { @@ -38808,6 +43366,26 @@ }, "type" : "CLASS", "lbl" : "normal male receptivity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0110165", + "meta" : { + "definition" : { + "val" : "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex.", + "xrefs" : [ "GOC:kmv" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2019-08-12T18:01:37Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "kmv" + } ] + }, + "type" : "CLASS", + "lbl" : "cellular anatomical entity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000158", "meta" : { @@ -39938,6 +44516,27 @@ }, "type" : "CLASS", "lbl" : "morbidity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002131", + "meta" : { + "definition" : { + "val" : "x overlaps y if and only if there exists some z such that x has part z and z part of y", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "overlaps" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001416", "meta" : { @@ -40477,6 +45076,23 @@ }, "type" : "CLASS", "lbl" : "obsolete relative length value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002598", + "meta" : { + "definition" : { + "val" : "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "renin -> arteriolar smooth muscle contraction" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "capable of positively regulating" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001420", "meta" : { @@ -40584,6 +45200,53 @@ }, "type" : "CLASS", "lbl" : "increased length" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0009987", + "meta" : { + "definition" : { + "val" : "Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.", + "xrefs" : [ "GOC:go_curators", "GOC:isa_complete" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "cellular physiological process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "cell growth and/or maintenance", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "cell physiology", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "single-organism cellular process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044763" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0050875" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "janelomax" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0008151" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-11T16:56:55Z" + } ] + }, + "type" : "CLASS", + "lbl" : "cellular process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0045000", "meta" : { @@ -40722,6 +45385,26 @@ }, "type" : "CLASS", "lbl" : "obsolete micronutrient sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002595", + "meta" : { + "definition" : { + "val" : "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + } ] + }, + "type" : "PROPERTY", + "lbl" : "causal relation between material entity and a process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001436", "meta" : { @@ -40792,6 +45475,23 @@ }, "type" : "CLASS", "lbl" : "obsolete macronutrient sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002596", + "meta" : { + "definition" : { + "val" : "Holds between c and p if and only if c is capable of some activity a, and a regulates p.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "pyrethroid -> growth" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "capable of regulating" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000589", "meta" : { @@ -40890,6 +45590,20 @@ }, "type" : "CLASS", "lbl" : "obsolete osmotic response sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002597", + "meta" : { + "definition" : { + "val" : "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "capable of negatively regulating" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000107", "meta" : { @@ -41210,6 +45924,42 @@ }, "type" : "CLASS", "lbl" : "alkaline" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0030545", + "meta" : { + "definition" : { + "val" : "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed.", + "xrefs" : [ "GOC:ceb" ] + }, + "xrefs" : [ { + "val" : "MIPS_funcat:18.02.07" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + } ] + }, + "type" : "CLASS", + "lbl" : "receptor regulator activity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0030546", + "meta" : { + "definition" : { + "val" : "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased.", + "xrefs" : [ "GOC:ceb" ] + }, + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "receptor activator activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + } ] + }, + "type" : "CLASS", + "lbl" : "signaling receptor activator activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000114", "meta" : { @@ -41288,6 +46038,23 @@ }, "type" : "CLASS", "lbl" : "obsolete radiation sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002584", + "meta" : { + "definition" : { + "val" : "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has part structure that is capable of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000597", "meta" : { @@ -41447,6 +46214,16 @@ }, "type" : "CLASS", "lbl" : "size" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002581", + "meta" : { + "definition" : { + "val" : "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL", + "xrefs" : [ ] + } + }, + "type" : "PROPERTY", + "lbl" : "is a defining property chain axiom" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001448", "meta" : { @@ -41495,6 +46272,16 @@ }, "type" : "CLASS", "lbl" : "height" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002582", + "meta" : { + "definition" : { + "val" : "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.", + "xrefs" : [ ] + } + }, + "type" : "PROPERTY", + "lbl" : "is a defining property chain axiom where second argument is reflexive" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000590", "meta" : { @@ -41670,6 +46457,29 @@ }, "type" : "CLASS", "lbl" : "decreased volume" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002578", + "meta" : { + "definition" : { + "val" : "Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly regulates (processual)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly regulates" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000112", "meta" : { @@ -41753,6 +46563,120 @@ }, "type" : "CLASS", "lbl" : "heterophilic" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0009966", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of signal transduction.", + "xrefs" : [ "GOC:sm" ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "regulation of signaling pathway", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "regulation of signalling pathway", + "xrefs" : [ "GOC:mah" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0035466" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of signal transduction" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0009967", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of signal transduction.", + "xrefs" : [ "GOC:sm" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "up regulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "positive regulation of signalling pathway", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "positive regulation of signaling pathway", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0035468" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of signal transduction" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0009968", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction.", + "xrefs" : [ "GOC:sm" ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "negative regulation of signalling pathway", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "negative regulation of signaling pathway", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of signal transduction", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0035467" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of signal transduction" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000529", "meta" : { @@ -42078,6 +47002,26 @@ }, "type" : "CLASS", "lbl" : "scarred" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002566", + "meta" : { + "definition" : { + "val" : "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influences (material entity to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally influences" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000539", "meta" : { @@ -42155,6 +47099,22 @@ }, "type" : "CLASS", "lbl" : "obsolete macronutrient sensitivity value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002563", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "interaction relation helper property" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001862", "meta" : { @@ -42201,6 +47161,16 @@ }, "type" : "CLASS", "lbl" : "obsolete osmotic response sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002564", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecular interaction relation helper property" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001863", "meta" : { @@ -42342,6 +47312,22 @@ }, "type" : "CLASS", "lbl" : "obsolete acid sensitivity value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002559", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influenced by (material entity to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally influenced by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001860", "meta" : { @@ -43318,6 +48304,29 @@ }, "type" : "CLASS", "lbl" : "obsolete u v light sensitivity value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0003824", + "meta" : { + "definition" : { + "val" : "Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.", + "xrefs" : [ "GOC:vw", "ISBN:0198506732" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant" ], + "xrefs" : [ { + "val" : "Wikipedia:Enzyme" + } ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "enzyme activity", + "xrefs" : [ "GOC:dph", "GOC:tb" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + } ] + }, + "type" : "CLASS", + "lbl" : "catalytic activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001817", "meta" : { @@ -43718,6 +48727,38 @@ }, "type" : "CLASS", "lbl" : "obsolete symmetry value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0010562", + "meta" : { + "definition" : { + "val" : "Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of phosphorus metabolic process" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", + "type" : "PROPERTY", + "lbl" : "in_subset" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0010563", + "meta" : { + "definition" : { + "val" : "Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of phosphorus metabolic process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001828", "meta" : { @@ -44027,6 +49068,76 @@ }, "type" : "CLASS", "lbl" : "permeability" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0033674", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.", + "xrefs" : [ "GOC:mah" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "upregulation of kinase activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of kinase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of kinase activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "kinase activator", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of kinase activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of kinase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0033673", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.", + "xrefs" : [ "GOC:mah" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "downregulation of kinase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of kinase activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of kinase activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "kinase inhibitor", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of kinase activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of kinase activity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000507", "meta" : { @@ -44523,6 +49634,39 @@ }, "type" : "CLASS", "lbl" : "arrhythmic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002506", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + } ] + }, + "type" : "PROPERTY", + "lbl" : "causal relation between material entities" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002500", + "meta" : { + "definition" : { + "val" : "A relationship between a material entity and a process where the material entity has some causal role that influences the process", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causal agent in process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000981", "meta" : { @@ -44536,6 +49680,26 @@ }, "type" : "CLASS", "lbl" : "obsolete relative porosity value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002501", + "meta" : { + "definition" : { + "val" : "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causal relation between processes" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000980", "meta" : { @@ -44549,6 +49713,19 @@ }, "type" : "CLASS", "lbl" : "obsolete absolute porosity value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002502", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/BFO_0000169" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "depends on" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000518", "meta" : { @@ -44618,6 +49795,35 @@ }, "type" : "CLASS", "lbl" : "obsolete humidity sensitivity value" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0098590", + "meta" : { + "definition" : { + "val" : "A membrane that is a (regional) part of the plasma membrane.", + "xrefs" : [ "GOC:dos" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "region of plasma membrane", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-03-06T11:55:32Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term should not be used for direct manual annotation as it should always be possible to choose a more specific subclass." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "davidos" + } ] + }, + "type" : "CLASS", + "lbl" : "plasma membrane region" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000510", "meta" : { @@ -45113,6 +50319,222 @@ }, "type" : "CLASS", "lbl" : "obsolete absolute photosensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_1902533", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of intracellular signal transduction.", + "xrefs" : [ "GOC:BHF", "GOC:TermGenie", "GOC:dph", "GOC:signaling", "GOC:tb" ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "up regulation of intracellular signaling cascade", + "xrefs" : [ "GOC:TermGenie" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "up-regulation of intracellular signaling pathway", + "xrefs" : [ "GOC:TermGenie" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "positive regulation of signal transmission via intracellular 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"definition" : { + "val" : "x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x).", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002604" + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'anterior end of organism' is-opposite-of 'posterior end of organism'" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'increase in temperature' is-opposite-of 'decrease in temperature'" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_class_level", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "is_opposite_of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is opposite of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002608", + "meta" : { + "definition" : { + "val" : "Inverse of 'causal agent in process'", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "process has causal agent" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000936", "meta" : { @@ -46006,6 +51638,10 @@ }, "type" : "CLASS", "lbl" : "obsolete backcross fertile" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0030000", + "type" : "CLASS", + "lbl" : "biological entity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000914", "meta" : { @@ -46169,6 +51805,119 @@ }, "type" : "CLASS", "lbl" : "decreased rate" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0042995", + "meta" : { + "definition" : { + "val" : "A prolongation or process extending from a cell, e.g. a flagellum or axon.", + "xrefs" : [ "GOC:jl", "http://www.cogsci.princeton.edu/~wn/" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "cellular process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "cellular projection", + "xrefs" : [ ] + }, { + "pred" : "hasBroadSynonym", + "val" : "cell process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "cell projection" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005929", + "meta" : { + "definition" : { + "val" : "A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body.", + "xrefs" : [ "GOC:cilia", "GOC:curators", "GOC:kmv", "GOC:vw", "ISBN:0198547684", "PMID:16824949", "PMID:17009929", "PMID:20144998" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_generic" ], + "xrefs" : [ { + "val" : "NIF_Subcellular:sao787716553" + }, { + "val" : "Wikipedia:Cilium" + }, { + "val" : "FMA:67181" + } ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "microtubule-based flagellum", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "primary cilium", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "eukaryotic flagellum", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "flagellum", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0072372" + } ] + }, + "type" : "CLASS", + "lbl" : "cilium" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005575", + "meta" : { + "definition" : { + "val" : "A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome).", + "xrefs" : [ "GOC:pdt", "NIF_Subcellular:sao1337158144" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "xrefs" : [ { + "val" : "NIF_Subcellular:sao1337158144" + } ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "cell or subcellular entity", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "subcellular entity", + "xrefs" : [ "NIF_Subcellular:nlx_subcell_100315" ] + }, { + "pred" : "hasExactSynonym", + "val" : "cellular component", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0008372" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code \"no data\" (ND), is used to indicate this." + } ] + }, + "type" : "CLASS", + "lbl" : "cellular_component" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002269", "meta" : { @@ -46345,12 +52094,33 @@ }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this day is part of this year (occurrent parthood)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000031" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000004" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000017" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000019" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." @@ -46360,12 +52130,21 @@ }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", "val" : "part_of" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my brain is part of my body (continuant parthood, two material entities)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." @@ -46550,6 +52329,9 @@ }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my body has part my brain (continuant parthood, two material entities)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." @@ -46630,6 +52412,40 @@ } ] }, "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005102", + "meta" : { + "definition" : { + "val" : "Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.", + "xrefs" : [ "GOC:bf", "GOC:ceb", "ISBN:0198506732" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], + "xrefs" : [ { + "val" : "Wikipedia:Ligand_(biochemistry)" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "receptor ligand", + "xrefs" : [ ] + }, { + "pred" : "hasBroadSynonym", + "val" : "receptor binding", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "receptor-associated protein activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Where appropriate, also consider annotating to 'receptor agonist activity ; GO:0048018'." + } ] + }, + "type" : "CLASS", + "lbl" : "signaling receptor binding" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002274", "meta" : { @@ -46917,6 +52733,16 @@ }, "type" : "CLASS", "lbl" : "increased accumulation" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000040", + "meta" : { + "definition" : { + "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "material entity" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000090", "meta" : { @@ -47145,6 +52971,37 @@ }, "type" : "CLASS", "lbl" : "decreased elasticity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0030990", + "meta" : { + "definition" : { + "val" : "A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules.", + "xrefs" : [ "GOC:cilia", "GOC:kmv", "PMID:14570576", "PMID:22118932", "PMID:23945166" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "intraflagellar transport complex", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "intraflagellar transport particle", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "IFT complex", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that we deem cilia and microtubule-based flagella to be equivalent." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + } ] + }, + "type" : "CLASS", + "lbl" : "intraciliary transport particle" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002281", "meta" : { @@ -47355,6 +53212,91 @@ }, "type" : "CLASS", "lbl" : "tubular" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000066", + "meta" : { + "definition" : { + "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "BFO:0000066" + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "occurs_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "occurs in" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "occurs_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds in" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" + } ] + }, + "type" : "PROPERTY", + "lbl" : "occurs in" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "meta" : { + "definition" : { + "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "site of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "contains process" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000062", + "meta" : { + "definition" : { + "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is preceded by" + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "preceded by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "preceded_by" + } ] + }, + "type" : "PROPERTY", + "lbl" : "preceded by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002292", "meta" : { @@ -47408,6 +53350,21 @@ }, "type" : "CLASS", "lbl" : "permanent" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000063", + "meta" : { + "definition" : { + "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "precedes" + } ] + }, + "type" : "PROPERTY", + "lbl" : "precedes" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002290", "meta" : { @@ -47444,6 +53401,20 @@ }, "type" : "CLASS", "lbl" : "agenesis" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000019", + "type" : "CLASS", + "lbl" : "quality" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000015", + "meta" : { + "definition" : { + "val" : "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "process" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000048", "meta" : { @@ -48006,6 +53977,16 @@ }, "type" : "CLASS", "lbl" : "obsolete absolute frequency" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000004", + "meta" : { + "definition" : { + "val" : "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "independent continuant" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000059", "meta" : { @@ -48584,6 +54565,26 @@ }, "type" : "CLASS", "lbl" : "monosomy" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000002", + "meta" : { + "definition" : { + "val" : "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "continuant" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000003", + "meta" : { + "definition" : { + "val" : "An entity that has temporal parts and that happens, unfolds or develops through time.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "occurrent" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001380", "meta" : { @@ -48599,6 +54600,49 @@ }, "type" : "CLASS", "lbl" : "paleopolyploid" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005515", + "meta" : { + "definition" : { + "val" : "Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).", + "xrefs" : [ "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_candida" ], + "xrefs" : [ { + "val" : "MIPS_funcat:16.01" + }, { + "val" : "MIPS_funcat:18.01.07" + }, { + "val" : "Reactome:R-HSA-170846" + }, { + "val" : "Reactome:R-HSA-170835" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "glycoprotein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "protein amino acid binding", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0045308" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0001948" + } ] + }, + "type" : "CLASS", + "lbl" : "protein binding" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym", + "type" : "PROPERTY", + "lbl" : "has_exact_synonym" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002249", "meta" : { @@ -49172,6 +55216,33 @@ }, "type" : "CLASS", "lbl" : "spatial pattern" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002180", + "meta" : { + "definition" : { + "val" : "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:Componency" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has component" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002258", "meta" : { @@ -49588,6 +55659,16 @@ } ] }, "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000020", + "meta" : { + "definition" : { + "val" : "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "specifically dependent continuant" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000070", "meta" : { @@ -49648,14 +55729,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001247", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001163", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001159" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001247", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001381", "pred" : "is_a", @@ -49668,6 +55749,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001756", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001585" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0098772", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0003674" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002025", "pred" : "is_a", @@ -49676,10 +55761,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042995", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044464" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001848", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002501", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002410" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001414", "pred" : "is_a", @@ -49692,6 +55785,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001968", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0019222", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0008152" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001043", "pred" : "is_a", @@ -49700,6 +55797,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051100", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0005488" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001765", "pred" : "is_a", @@ -49732,6 +55833,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000328", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000017" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010648", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048523" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002415", "pred" : "is_a", @@ -49776,6 +55881,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000632", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000440" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0045936", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0006796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002252", "pred" : "is_a", @@ -49864,6 +55973,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001403", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0098590", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0016020" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001496", "pred" : "is_a", @@ -49920,6 +56033,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001515", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000019" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0016020", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0110165" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001735", "pred" : "is_a", @@ -49944,10 +56061,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001323", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001709" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0050794", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0050794", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050789" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0045937", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0006796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005003", "pred" : "is_a", @@ -49956,6 +56085,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1900120", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043393" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0023057", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0023052" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0023056", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0023052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", "pred" : "is_a", @@ -49972,6 +56113,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002221", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043229", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043226" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000050", "pred" : "is_a", @@ -49992,6 +56137,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001297", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001294" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010647", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048522" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000415", "pred" : "is_a", @@ -50036,6 +56185,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000708", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0008152", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", "pred" : "is_a", @@ -50044,6 +56197,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001769", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/CARO_0001010", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000040" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001457", "pred" : "is_a", @@ -50100,10 +56257,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002116", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051100", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044092" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001467", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051347", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043085" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0007165", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0051716" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002477", "pred" : "is_a", @@ -50136,18 +56305,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002488", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001590" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048585", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048519" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045070", "pred" : "is_a", @@ -50216,6 +56389,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001282", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000951" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002630", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002212" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015013", "pred" : "is_a", @@ -50228,6 +56405,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002471", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0004034", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0004032" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", "pred" : "is_a", @@ -50256,14 +56437,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002250", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002248" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001966", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001986", "pred" : "is_a", @@ -50280,6 +56461,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009967", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009968", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001863", "pred" : "is_a", @@ -50308,6 +56497,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0030000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000646" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0004035", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0004033" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002371", "pred" : "is_a", @@ -50348,6 +56541,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002083", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001555" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048519", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050789" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051348", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043086" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001927", "pred" : "is_a", @@ -50396,6 +56597,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000911", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0033674", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043549" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001620", "pred" : "is_a", @@ -50404,14 +56609,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001248", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045020", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000955" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001380", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045020", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000955" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000066", "pred" : "is_a", @@ -50444,6 +56649,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001958", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0030990", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0032991" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001967", "pred" : "is_a", @@ -50452,6 +56661,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001728", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001727" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005886", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0071944" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001678", "pred" : "is_a", @@ -50472,6 +56685,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000068", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000001" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002022", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002334" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0098797", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0098796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001650", "pred" : "is_a", @@ -50488,14 +56709,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001825", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001054", "pred" : "is_a", @@ -50556,6 +56777,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002538", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002005" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002258", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002286" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002486", "pred" : "is_a", @@ -50576,6 +56801,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002246", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0003674", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000015" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001295", "pred" : "is_a", @@ -50636,6 +56865,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001514", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048584", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0050896" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048585", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0050896" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001767", "pred" : "is_a", @@ -50645,17 +56882,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002067" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", + "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001230" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001539", "pred" : "is_a", @@ -50677,17 +56914,21 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000068" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001773", + "sub" : "http://purl.obolibrary.org/obo/GO_0044237", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" + "obj" : "http://purl.obolibrary.org/obo/GO_0008152" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001773", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001178" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001643", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001178" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001402", "pred" : "is_a", @@ -50708,6 +56949,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000963", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000957" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002384", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002324" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045079", "pred" : "is_a", @@ -50736,6 +56981,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001531", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002131", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002323" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001020", "pred" : "is_a", @@ -50768,6 +57017,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002118", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000470" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009967", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010647" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0016740", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0003824" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001959", "pred" : "is_a", @@ -50784,6 +57041,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001948", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002255" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002180", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0055001", "pred" : "is_a", @@ -50804,6 +57065,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043549", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0042325" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045070", "pred" : "is_a", @@ -50816,6 +57081,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002427", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043393", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051098" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015021", "pred" : "is_a", @@ -50844,6 +57113,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002029", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048585", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048583" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002338", "pred" : "is_a", @@ -50892,6 +57165,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048583", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050789" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002042", "pred" : "is_a", @@ -50928,18 +57205,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002367", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000384" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0023057", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048519" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001362", "pred" : "is_a", @@ -50952,6 +57233,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002267", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002500", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002595" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001786", "pred" : "is_a", @@ -51024,6 +57309,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001726", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001721" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009968", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010648" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001788", "pred" : "is_a", @@ -51052,6 +57341,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002474", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001329" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0023051", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050789" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001965", "pred" : "is_a", @@ -51120,6 +57413,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000323", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0019220", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0006796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002479", "pred" : "is_a", @@ -51144,6 +57441,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002506", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002410" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009893", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048518" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002481", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002564" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002188", "pred" : "is_a", @@ -51152,6 +57461,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045068", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002360" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000051", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002003", "pred" : "is_a", @@ -51160,6 +57473,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001340", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001894" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0023056", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048518" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0007165", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0023052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001253", "pred" : "is_a", @@ -51172,6 +57493,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001359", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002087", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000062" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040000", "pred" : "is_a", @@ -51208,14 +57533,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001614", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000467", "pred" : "is_a", @@ -51252,6 +57577,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001499", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005488", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0003674" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045008", "pred" : "is_a", @@ -51264,6 +57593,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000060", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002286", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002384" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001595", "pred" : "is_a", @@ -51276,6 +57609,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001522", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000008" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051347", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051338" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002420", "pred" : "is_a", @@ -51308,6 +57645,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001803", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000927" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002428", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002263" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015014", "pred" : "is_a", @@ -51432,6 +57773,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001172", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001031" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0045937", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010562" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045080", "pred" : "is_a", @@ -51452,14 +57797,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001615", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", "pred" : "is_a", @@ -51484,14 +57829,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000964", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000957" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001627", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001626" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002091", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001627", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001626" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001594", "pred" : "is_a", @@ -51521,13 +57866,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0055002", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" + "sub" : "http://purl.obolibrary.org/obo/RO_0002013", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002334" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0055002", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", "pred" : "is_a", @@ -51540,6 +57889,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001858", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002076" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002025", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002211" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001973", "pred" : "is_a", @@ -51552,6 +57905,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009987", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001762", "pred" : "is_a", @@ -51560,6 +57917,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001888", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001548" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0050790", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0065009" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045009", "pred" : "is_a", @@ -51572,14 +57933,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001626", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0016301", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0016310" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001903", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001963", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001903", + "sub" : "http://purl.obolibrary.org/obo/GO_0051348", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" + "obj" : "http://purl.obolibrary.org/obo/GO_0051338" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002148", "pred" : "is_a", @@ -51628,6 +57997,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002498", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048584", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048583" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000944", "pred" : "is_a", @@ -51676,6 +58049,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000719", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002596", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002500" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001931", "pred" : "is_a", @@ -51700,14 +58077,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000300", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001269", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001055", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001269", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002287", "pred" : "is_a", @@ -51728,6 +58105,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002312", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0110165", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0005575" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000069", "pred" : "is_a", @@ -51736,14 +58117,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002151", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001785" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002201", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002016" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002201", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002326", "pred" : "is_a", @@ -51760,6 +58141,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000406", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001591" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005622", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0005575" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002139", "pred" : "is_a", @@ -51784,6 +58169,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002467", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0019220", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051174" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", "pred" : "is_a", @@ -51796,18 +58185,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000297", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002324" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002206", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002218", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002206", + "sub" : "http://purl.obolibrary.org/obo/GO_0016301", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" + "obj" : "http://purl.obolibrary.org/obo/GO_0016772" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002368", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002370" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009893", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0019222" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030007", "pred" : "is_a", @@ -51824,6 +58221,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045033", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001331" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0035556", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042327", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0045937" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000427", "pred" : "is_a", @@ -51840,6 +58245,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002014", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002335" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045019", "pred" : "is_a", @@ -51852,6 +58261,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000463", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001998" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0031325", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0009893" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001375", "pred" : "is_a", @@ -51872,6 +58285,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002400", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001409" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042326", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0016310" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002418", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002427" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000600", "pred" : "is_a", @@ -51880,14 +58301,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001418", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001487", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001372", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001294" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001487", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" + "sub" : "http://purl.obolibrary.org/obo/RO_0004047", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002418" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002322", "pred" : "is_a", @@ -51904,10 +58329,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000773", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000189" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009892", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0019222" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001462", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001464" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0050789", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0065007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000948", "pred" : "is_a", @@ -52012,6 +58445,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002335", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005623", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0005575" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", "pred" : "is_a", @@ -52040,6 +58477,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/CL_0000000", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CARO_0000003" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042326", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0045936" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001872", "pred" : "is_a", @@ -52056,10 +58501,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001749", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002015", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002336" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001376", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001393" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0016772", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0016740" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051099", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044093" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000631", "pred" : "is_a", @@ -52100,6 +58557,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001596", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001595" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001373", "pred" : "is_a", @@ -52112,10 +58573,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001507", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051338", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0016740" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001463", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001464" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0004046", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002418" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001555", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", @@ -52124,6 +58593,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001591", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000051", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002131" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001936", "pred" : "is_a", @@ -52160,6 +58633,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002473", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042327", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0042325" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002074", "pred" : "is_a", @@ -52224,18 +58701,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002028", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002027" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0032091", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0005515" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001301" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001961", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001934", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001961", + "sub" : "http://purl.obolibrary.org/obo/GO_0048523", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + "obj" : "http://purl.obolibrary.org/obo/GO_0050794" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", "pred" : "is_a", @@ -52276,6 +58761,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045032", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005929", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", + "obj" : "http://purl.obolibrary.org/obo/GO_0030990" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030005", "pred" : "is_a", @@ -52312,6 +58801,10 @@ "sub" : "http://purl.obolibrary.org/obo/pato#has_divisor_quality", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/pato#has_ratio_quality" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002263", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002264" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005017", "pred" : "is_a", @@ -52368,14 +58861,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001277", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000953" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002131" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002342", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002227" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002405", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002412" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001989", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001591" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002595", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002410" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002404", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002411" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000937", "pred" : "is_a", @@ -52392,6 +58901,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002334", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042326", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0042325" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002071", "pred" : "is_a", @@ -52412,22 +58925,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001440", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001531" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001855", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002376", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001855", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002163", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001645" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001570", "pred" : "is_a", @@ -52440,6 +58953,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002537", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042327", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002137", "pred" : "is_a", @@ -52480,6 +58997,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048018", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0005102" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0033673", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0016301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002355", "pred" : "is_a", @@ -52524,6 +59049,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002352", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001868", "pred" : "is_a", @@ -52552,6 +59081,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002181", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010563", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0031324" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000464", "pred" : "is_a", @@ -52576,6 +59109,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0010003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0010002" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0030546", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0030545" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002359", "pred" : "is_a", @@ -52588,6 +59125,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000630", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0030002" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002352", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000056" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000043", "pred" : "is_a", @@ -52600,14 +59141,38 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000380", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000044" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002412", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002090" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002258", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002324" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001870", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010563", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0006793" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010562", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0006793" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001337", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001895" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002385", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002384" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002023", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002022" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001388", "pred" : "is_a", @@ -52640,6 +59205,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001374", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051348", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0016740" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051347", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0016740" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001434", "pred" : "is_a", @@ -52664,6 +59237,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001497", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002629", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002578" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0004031", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", @@ -52672,6 +59253,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002506", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010562", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0031325" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001441", "pred" : "is_a", @@ -52696,10 +59281,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002072", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0032092", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0005515" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002356", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002354" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048522", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048523", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002119", "pred" : "is_a", @@ -52736,6 +59333,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001022", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0033673", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043549" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002411", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000063" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001743", "pred" : "is_a", @@ -52792,6 +59397,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015024", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000973" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005515", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0005488" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043085", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050790" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001178", "pred" : "is_a", @@ -52800,6 +59413,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002107", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002211", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002411" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001924", "pred" : "is_a", @@ -52812,10 +59429,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001200", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001890" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002087", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002090" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043393", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0005515" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000410", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043549", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0016301" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002233", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001167", "pred" : "is_a", @@ -52828,6 +59461,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000422", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000056" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002216", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002500" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001159", "pred" : "is_a", @@ -52840,6 +59477,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002375", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002024", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002022" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002387", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002384" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001397", "pred" : "is_a", @@ -52884,6 +59529,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005886", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0016020" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040001", "pred" : "is_a", @@ -52904,6 +59553,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002396", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0033674", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0016301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002147", "pred" : "is_a", @@ -52924,6 +59577,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002038", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002037" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0033674", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0042327" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", "pred" : "is_a", @@ -52944,6 +59601,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001601", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048584", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048518" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045029", "pred" : "is_a", @@ -52988,6 +59649,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0030004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0030000" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0065009", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0065007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000185", "pred" : "is_a", @@ -53000,18 +59665,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000992", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001548" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001997", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000992", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001548" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002348", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043086", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050790" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000078", "pred" : "is_a", @@ -53032,6 +59701,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002254", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002258" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000274", "pred" : "is_a", @@ -53048,6 +59721,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045061", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000921" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002025", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002017" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0007165", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0007154" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045021", "pred" : "is_a", @@ -53056,22 +59737,34 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001408", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002608", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002410" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002388", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002387" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000273", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001434" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002255", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002385" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045030", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000125" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001386", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001385" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001335", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001895" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001386", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001385" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002333", "pred" : "is_a", @@ -53080,6 +59773,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001608", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009966", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001472", "pred" : "is_a", @@ -53088,6 +59785,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0020000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000047" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048518", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050789" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002221", "pred" : "is_a", @@ -53232,10 +59933,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001260", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000951" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0098590", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0005886" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000040", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001621", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002013", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002017" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002331", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002431" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045007", "pred" : "is_a", @@ -53248,6 +59965,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045081", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000998" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0006793", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044237" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0032092", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051099" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001289", "pred" : "is_a", @@ -53268,10 +59993,38 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000642", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002222" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002014", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002013" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002629", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002213" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042325", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001395", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001394" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043085", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0003824" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043086", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0003824" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002431", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002500" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000643", "pred" : "is_a", @@ -53312,22 +60065,34 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001873", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000946", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002132", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000946", + "sub" : "http://purl.obolibrary.org/obo/GO_0051100", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" + "obj" : "http://purl.obolibrary.org/obo/GO_0051098" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001384", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002559", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002566" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002452", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002450", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002448" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001605", "pred" : "is_a", @@ -53428,6 +60193,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000299", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0098796", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0016020" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", "pred" : "is_a", @@ -53440,10 +60209,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002212", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005102", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0005515" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001043" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043227", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043226" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001206", "pred" : "is_a", @@ -53484,6 +60265,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1900121", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0032091" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001168", "pred" : "is_a", @@ -53508,6 +60293,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001872", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000413" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002015", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002013" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002131", "pred" : "is_a", @@ -53560,6 +60349,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002031", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002019", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002233" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002291", "pred" : "is_a", @@ -53568,6 +60361,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000770", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000188" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0033673", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0042326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001571", "pred" : "is_a", @@ -53580,22 +60377,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002172", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001786" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002299", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002078" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002279", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002278" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002306", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002299", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002078" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002101", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002306", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002262", "pred" : "is_a", @@ -53612,6 +60409,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000500", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002202", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002203" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000513", "pred" : "is_a", @@ -53640,6 +60441,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002055", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000066", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000067" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", "pred" : "is_a", @@ -53656,10 +60461,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002282", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044237", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001696", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000273" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002334", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002427" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002423", "pred" : "is_a", @@ -53676,18 +60489,38 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001349", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001348" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000062", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000063" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001458", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001457" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002213", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001331", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000058" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002597", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002596" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1900122", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0032092" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001809", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000440" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002405", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002087" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002223", "pred" : "is_a", @@ -53700,10 +60533,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002097", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002584", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002595" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001362" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0031323", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050794" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001956", "pred" : "http://purl.obolibrary.org/obo/pato#towards", @@ -53748,14 +60589,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001552", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001457" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045073", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045051", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001323" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045073", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001739", "pred" : "is_a", @@ -53768,14 +60609,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045074", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001227" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002255", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002286" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010648", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010646" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001899", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001713" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1900121", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0005102" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001664", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002566", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002506" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001917", "pred" : "is_a", @@ -53788,6 +60645,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001257", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000954" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002584", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001950", "pred" : "is_a", @@ -53808,6 +60669,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001761", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001767" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0016310", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0006796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", "pred" : "is_a", @@ -53816,6 +60681,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001750", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001749" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044093", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0003674" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001046", "pred" : "is_a", @@ -53852,10 +60721,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015002" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009893", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0008152" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000040" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002327", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002333" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0008150", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000015" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045028", "pred" : "is_a", @@ -53872,14 +60753,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000634", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000626", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000634", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002370", "pred" : "is_a", @@ -53888,6 +60769,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000387", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/CARO_0000003", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CARO_0000006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045038", "pred" : "is_a", @@ -53896,6 +60781,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000048" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002023", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002630" + }, { + "sub" : "http://purl.obolibrary.org/obo/CARO_0030000", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002056", "pred" : "is_a", @@ -53936,6 +60829,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002347", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002021" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002598", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002596" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", @@ -53972,6 +60869,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001544", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001543" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002314", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002502" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002272", "pred" : "is_a", @@ -53984,14 +60885,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001315", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001333", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002324" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001653", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001652" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001333", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002324" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001312", "pred" : "is_a", @@ -54000,6 +60901,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001192", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002017", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001671", "pred" : "is_a", @@ -54008,6 +60913,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001028", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010647", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010646" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002333", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040013", "pred" : "is_a", @@ -54104,6 +61017,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002067", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002024", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002629" + }, { + "sub" : "http://purl.obolibrary.org/obo/CARO_0000000", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CARO_0030000" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001751", "pred" : "is_a", @@ -54116,6 +61037,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015013" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000015", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045012", "pred" : "is_a", @@ -54136,10 +61061,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002373", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0004033", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002264" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009966", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048583" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002300", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000069" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009892", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0008152" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000146", "pred" : "is_a", @@ -54168,6 +61105,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000582", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000128" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0000056", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000057" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002331", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002217" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001488", "pred" : "is_a", @@ -54176,6 +61121,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002276", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001533" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002404", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000062" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002333", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000570", "pred" : "is_a", @@ -54208,6 +61161,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045038", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000547" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002578", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002412" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001849", "pred" : "is_a", @@ -54216,6 +61173,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001444", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001442" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0098796", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0032991" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002294", "pred" : "is_a", @@ -54236,6 +61197,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001205", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001206" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040023", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0000052", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000053" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001311", "pred" : "is_a", @@ -54256,6 +61225,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001979", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002212", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002211" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0010000", "pred" : "is_a", @@ -54268,6 +61241,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001727", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002304", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0004047" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000077", "pred" : "is_a", @@ -54280,6 +61257,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001283", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000322" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043085", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044093" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", "pred" : "is_a", @@ -54292,6 +61273,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045055" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002430", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002428" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0031325", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0031323" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001461", "pred" : "is_a", @@ -54316,18 +61305,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015017" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000161", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002062" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000039", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000161", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002062" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001835", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0032091", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051100" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002412", "pred" : "is_a", @@ -54352,6 +61345,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002301", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000069" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044092", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0003674" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", "pred" : "is_a", @@ -54385,17 +61382,29 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002304", + "sub" : "http://purl.obolibrary.org/obo/CARO_0000014", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" + "obj" : "http://purl.obolibrary.org/obo/CARO_0000003" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000757", + "sub" : "http://purl.obolibrary.org/obo/RO_0004032", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002264" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0031324", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000185" + "obj" : "http://purl.obolibrary.org/obo/GO_0031323" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002304", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000757", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000185" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002111", "pred" : "is_a", @@ -54432,10 +61441,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002303", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1900120", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0005102" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000888" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043086", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044092" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0033674", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051347" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010563", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051174" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000639", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -54452,6 +61477,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002058", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001323" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002564", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002563" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001442", "pred" : "is_a", @@ -54480,10 +61509,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001312", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001310" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042325", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0019220" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0071944", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0110165" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0010001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051098", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0065009" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002305", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0004046" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000402", "pred" : "is_a", @@ -54516,6 +61561,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001708", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000117" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002213", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002211" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001789", "pred" : "is_a", @@ -54528,14 +61577,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001333", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045013", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045013", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001229", "pred" : "is_a", @@ -54564,6 +61613,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001898", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001712" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0098797", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0005886" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001845", "pred" : "is_a", @@ -54588,10 +61641,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000375", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000040" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045054" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045049", "pred" : "is_a", @@ -54600,6 +61649,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001193", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045054" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001258", "pred" : "is_a", @@ -54616,10 +61669,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043226", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0110165" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000769" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0000052", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002314" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000062", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002086" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001879", "pred" : "is_a", @@ -54632,6 +61697,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002204", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002201" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0065007", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002325", "pred" : "is_a", @@ -54640,14 +61709,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000165" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001861", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002013" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001875", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001861", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002013" + "sub" : "http://purl.obolibrary.org/obo/GO_0010646", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0007154" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000152", "pred" : "is_a", @@ -54672,14 +61745,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000639" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002001", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001999" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002024", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002001", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001999" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002445", "pred" : "is_a", @@ -54744,10 +61817,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001428", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001842" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010562", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051174" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001604", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000050" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0004035", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002263" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001617", "pred" : "is_a", @@ -54784,6 +61865,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045033", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002216", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001366", "pred" : "is_a", @@ -54792,6 +61877,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002335", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002334" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001684", "pred" : "is_a", @@ -54892,6 +61981,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000133", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000001", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002484", "pred" : "is_a", @@ -54900,18 +61993,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002540", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0004034", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002263" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000141", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000021", + "sub" : "http://purl.obolibrary.org/obo/GO_0048522", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" + "obj" : "http://purl.obolibrary.org/obo/GO_0050794" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002052", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000021", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001876", "pred" : "is_a", @@ -54928,14 +62029,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001833", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0005008", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001230", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0005008", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000276", "pred" : "is_a", @@ -54948,10 +62049,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000058", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044464", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CARO_0000014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002416", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001687" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048519", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048518", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043549", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051338" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002040", "pred" : "is_a", @@ -54968,6 +62085,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002446", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0006796", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0006793" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000623", "pred" : "is_a", @@ -55012,10 +62133,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002459", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002563", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002464" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002207", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000040" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002559", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002506" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002063", "pred" : "is_a", @@ -55092,6 +62221,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001836", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0019222", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050789" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001361", "pred" : "is_a", @@ -55108,6 +62241,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001252", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000950" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002215", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002216" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045045", "pred" : "is_a", @@ -55116,14 +62253,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001951", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001278", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000953" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000938", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002264" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001278", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000953" + "sub" : "http://purl.obolibrary.org/obo/RO_0002336", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002334" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000636", "pred" : "is_a", @@ -55152,6 +62293,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015021" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002217", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002218" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001541", "pred" : "is_a", @@ -55160,6 +62305,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002217", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000056" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002345", "pred" : "is_a", @@ -55184,14 +62333,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045055", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045054" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040012", "pred" : "is_a", @@ -55200,10 +62349,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040026", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002310", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051716", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050896" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001890", "pred" : "is_a", @@ -55232,14 +62389,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000638", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002430", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000638", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002062", "pred" : "is_a", @@ -55281,17 +62438,21 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001791" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001830", + "sub" : "http://purl.obolibrary.org/obo/GO_0042995", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + "obj" : "http://purl.obolibrary.org/obo/GO_0110165" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002180", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001830", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002135", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000502" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002180", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002167", "pred" : "is_a", @@ -55316,6 +62477,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002427", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002501" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002018", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002180" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000954", "pred" : "is_a", @@ -55332,6 +62501,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001377", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001393" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002447", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002436" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002008", "pred" : "is_a", @@ -55340,14 +62513,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002077", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001476", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045076", "pred" : "is_a", @@ -55368,6 +62541,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001311", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000499" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048018", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0030546" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051099", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051098" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001379", "pred" : "is_a", @@ -55396,6 +62577,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002431", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0050790", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0003824" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001547", "pred" : "is_a", @@ -55444,18 +62633,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001519", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001705", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001424" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001714", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001334" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001705", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001424" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001268", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000952" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043231", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043227" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000049", "pred" : "is_a", @@ -55468,6 +62661,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001370", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002012" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040022", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", @@ -55492,6 +62689,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001779" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0023052", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001581", "pred" : "is_a", @@ -55504,6 +62705,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001604", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002218", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002431", "pred" : "is_a", @@ -55532,26 +62737,50 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002422", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002213", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002336" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002203", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002201" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0120025", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0042995" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002314", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002292", + "sub" : "http://purl.obolibrary.org/obo/RO_0002212", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002335" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043231", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + "obj" : "http://purl.obolibrary.org/obo/GO_0043229" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002182", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002292", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001831", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0050789", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002211", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002334" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002311", "pred" : "is_a", @@ -55560,18 +62789,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000596", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002448", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002566" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000624", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002435", "pred" : "is_a", @@ -55588,6 +62821,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002146", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002448", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002436" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002457", "pred" : "is_a", @@ -55608,6 +62845,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001477", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0031324", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0009892" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002099", "pred" : "is_a", @@ -55628,6 +62869,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001427", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001842" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010648", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0007154" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010647", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0007154" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015017", "pred" : "is_a", @@ -55656,10 +62905,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045045", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002432", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001548", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002198" + }, { + "sub" : "http://purl.obolibrary.org/obo/CARO_0000006", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000040" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045012", "pred" : "is_a", @@ -55680,14 +62937,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0010003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051716", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000892", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000956" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005929", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043226" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001683", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001685" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002304", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002411" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001267", "pred" : "is_a", @@ -55708,6 +62977,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045089", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045088" + }, { + "sub" : "http://purl.obolibrary.org/obo/CARO_0000006", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CARO_0000000" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0031323", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0019222" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001780", "pred" : "is_a", @@ -55764,18 +63041,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001919", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002086", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002212" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001430", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001428" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002212" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002324", "pred" : "is_a", @@ -55784,6 +63065,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002253", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000407" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1900121", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_1900120" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045065", "pred" : "is_a", @@ -55824,6 +63109,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000461", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000068" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0045936", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010563" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", "pred" : "is_a", @@ -55852,10 +63141,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001425", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002578", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002211" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001772", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002436", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002434" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002280", "pred" : "is_a", @@ -55876,6 +63173,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002251", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0065009", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0003674" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0032991", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0005575" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001189", "pred" : "is_a", @@ -55893,13 +63198,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001634" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001331" + "sub" : "http://purl.obolibrary.org/obo/RO_0002412", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002411" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001528", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001519" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001331" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000018", "pred" : "is_a", @@ -55936,6 +63245,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001416", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0035556", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000066", + "obj" : "http://purl.obolibrary.org/obo/GO_0005622" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001944", "pred" : "is_a", @@ -55984,14 +63297,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001783", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002411", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002418" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001770", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001782", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000049" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001770", + "sub" : "http://purl.obolibrary.org/obo/GO_0007165", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" + "obj" : "http://purl.obolibrary.org/obo/GO_0050794" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002229", "pred" : "is_a", @@ -56048,6 +63369,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002305", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002411" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001263", "pred" : "is_a", @@ -56060,14 +63385,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000983", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000970" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001250", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000320" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001900", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001250", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000320" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000956", "pred" : "is_a", @@ -56080,6 +63405,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000117" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1900122", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_1900120" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001567", "pred" : "is_a", @@ -56112,6 +63441,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045078", "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0031323", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0044237" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001787", "pred" : "is_a", @@ -56132,6 +63465,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000592", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000915" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002449", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002448" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000918", "pred" : "is_a", @@ -56244,6 +63581,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051099", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0005488" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001420", "pred" : "is_a", @@ -56296,10 +63637,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045030", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002202", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002258" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002518", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0030545", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0098772" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0050001", "pred" : "is_a", @@ -56324,6 +63673,10 @@ "sub" : "http://purl.obolibrary.org/obo/pato#has_dividend_quality", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/pato#has_ratio_quality" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051174", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0031323" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002197", "pred" : "is_a", @@ -56348,6 +63701,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001262", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000322" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0031324", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048523" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002388", "pred" : "is_a", @@ -56364,14 +63721,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000701", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", + "sub" : "http://purl.obolibrary.org/obo/GO_1902531", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + "obj" : "http://purl.obolibrary.org/obo/GO_0009966" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", "pred" : "is_a", @@ -56396,6 +63757,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000125", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1902531", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0035556" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000595", "pred" : "is_a", @@ -56416,10 +63781,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002382", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1902532", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_1902531" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040009", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002418", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002501" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0032091", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043393" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005634", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044464" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001482", "pred" : "is_a", @@ -56444,6 +63825,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048018", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002433", "pred" : "is_a", @@ -56476,6 +63861,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001674", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002022", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002578" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001480", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -56557,13 +63946,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001979" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001743", + "sub" : "http://purl.obolibrary.org/obo/GO_0010646", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001741" + "obj" : "http://purl.obolibrary.org/obo/GO_0050794" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001743", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001741" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001606", "pred" : "is_a", @@ -56572,14 +63965,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002106", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002078", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002054", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002078", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002403", "pred" : "is_a", @@ -56649,13 +64042,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000070" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", + "sub" : "http://purl.obolibrary.org/obo/GO_0005929", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000077" + "obj" : "http://purl.obolibrary.org/obo/GO_0120025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001744", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001739" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000077" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000330", "pred" : "is_a", @@ -56680,18 +64077,38 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001720", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001719" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009892", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048519" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001266", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002329", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002327", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002215" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0050000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051098", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0005488" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001732", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001729" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002203", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002388" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000985", "pred" : "is_a", @@ -56701,17 +64118,29 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", + "sub" : "http://purl.obolibrary.org/obo/RO_0002203", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002387" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1902532", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" + "obj" : "http://purl.obolibrary.org/obo/GO_0009968" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001161", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005024", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0023051", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0023052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000322", "pred" : "is_a", @@ -56736,6 +64165,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001449", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1902533", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_1902531" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001718", "pred" : "is_a", @@ -56748,6 +64181,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000984", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000973" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0032092", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043393" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002383", "pred" : "is_a", @@ -56813,13 +64250,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002503", + "sub" : "http://purl.obolibrary.org/obo/PATO_0040021", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001576", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001025" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002503", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001405", "pred" : "is_a", @@ -56832,6 +64273,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001670", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001152" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002411", "pred" : "is_a", @@ -56848,6 +64293,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000117", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002233", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002352" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002511", "pred" : "is_a", @@ -56860,6 +64309,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002323", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002062" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009966", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010646" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045076", "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", @@ -56868,6 +64321,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001943", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000951" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0031324", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0044237" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002341", "pred" : "is_a", @@ -56960,6 +64417,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000455", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002500", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002608" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001051", "pred" : "is_a", @@ -57016,6 +64477,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002013", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1902533", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0009967" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001264", "pred" : "is_a", @@ -57048,6 +64513,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002353", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0098772", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0065009" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001185", "pred" : "is_a", @@ -57080,6 +64549,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000505", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009968", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048585" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002381", "pred" : "is_a", @@ -57096,6 +64569,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002406", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002405" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002431", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002264" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0033673", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051348" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0007154", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001558", "pred" : "is_a", @@ -57140,6 +64625,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000952", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0023056", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0023051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001438", "pred" : "is_a", @@ -57196,14 +64685,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001290", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001753", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002534", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001753", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002123", "pred" : "is_a", @@ -57248,10 +64737,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002191", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002190" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048522", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048518" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044093", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0065009" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001741", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001740" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002473", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001552", "pred" : "is_a", @@ -57268,10 +64769,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001491", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001749" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0003824", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0003674" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002165", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051174", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0006793" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002108", "pred" : "is_a", @@ -57312,6 +64821,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000297", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002052" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1902532", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0035556" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045094", "pred" : "is_a", @@ -57328,10 +64841,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001586", "pred" : "http://purl.obolibrary.org/obo/pato#towards", "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002264", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002500" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001492", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0050001" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009966", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0023051" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009967", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0009966" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002203", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002286" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001196", "pred" : "is_a", @@ -57360,14 +64889,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002447", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009967", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048584" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002211", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002432", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002131" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001435", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002429", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001296", "pred" : "is_a", @@ -57384,6 +64925,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002501", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002405", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002404" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002407", "pred" : "is_a", @@ -57412,6 +64957,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002491", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0045937", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0019220" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001688", "pred" : "is_a", @@ -57444,10 +64993,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045074", "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0023057", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0023051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000951", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0031325", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0044237" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002451", "pred" : "is_a", @@ -57500,18 +65057,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001887", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001886" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002535", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001754", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002535", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + "sub" : "http://purl.obolibrary.org/obo/RO_0002090", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000063" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045084", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044092", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0065009" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001898", "pred" : "is_a", @@ -57540,6 +65105,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001929", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048523", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048519" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002143", "pred" : "is_a", @@ -57588,14 +65157,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045060", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002011", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002073", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002011", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001284", "pred" : "is_a", @@ -57632,6 +65201,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045024", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001035" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009968", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0009966" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002428", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002431" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001195", "pred" : "is_a", @@ -57652,6 +65229,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000700", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0120025", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", + "obj" : "http://purl.obolibrary.org/obo/GO_0098590" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", "pred" : "is_a", @@ -57696,10 +65277,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002524", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0007165", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000600", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000921" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002404", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002427" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000019", "pred" : "is_a", @@ -57720,10 +65309,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001327", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001324" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0045936", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0019220" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040024", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001354", "pred" : "is_a", @@ -57776,14 +65373,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002149", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001788" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002254", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002255" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001459" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1900122", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0005102" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001993", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001992" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0050896", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040020", "pred" : "is_a", @@ -57812,14 +65421,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001321", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001321", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", @@ -57844,6 +65453,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000062", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001530" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048583", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0050896" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001696", "pred" : "is_a", @@ -57856,6 +65469,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001563", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051338", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050790" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001303", "pred" : "is_a", @@ -57864,6 +65481,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001261", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000322" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1902533", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0035556" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001670", "pred" : "is_a", @@ -57872,6 +65493,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000615", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0030000" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0031325", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048522" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", "pred" : "is_a", @@ -57888,6 +65513,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000608", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000136" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009968", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0023057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001510", "pred" : "is_a", @@ -57920,6 +65549,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045090", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002505", "pred" : "is_a", @@ -57936,6 +65569,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000957", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0005634", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0043231" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002520", "pred" : "is_a", @@ -57964,6 +65601,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001437", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001435" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002630", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002578" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001889", "pred" : "is_a", @@ -57992,14 +65633,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001317", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002070", "pred" : "is_a", @@ -58024,6 +65665,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000953", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043229", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0005622" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002190", "pred" : "is_a", @@ -58116,6 +65761,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000367", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009967", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0023056" } ], "id" : "http://purl.obolibrary.org/obo/pato.json", "meta" : { @@ -58137,53 +65786,2878 @@ "pred" : "http://www.geneontology.org/formats/oboInOwl#saved-by", "val" : "segerdel" } ], - "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-09-13" + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29" }, "equivalentNodesSets" : [ ], - "logicalDefinitionAxioms" : [ ], + "logicalDefinitionAxioms" : [ { + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045041", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002326" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", + "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002043", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002041" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", + "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0019220", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0006796" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001693", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000998" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", + "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002297", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001488" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", + "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045010", + "genusIds" : [ 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"predicateId" : "http://purl.obolibrary.org/obo/RO_0002222", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to", "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002384", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002019", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/GO_0004872" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/pato#has_dividend_entity", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002334", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002434", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002258", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002479", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002215", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/pato#has_ratio_quality", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002018", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000062", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000063", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] } ], - "propertyChainAxioms" : [ ] + "propertyChainAxioms" : [ { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000066", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002566", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002411", "http://purl.obolibrary.org/obo/RO_0002233" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002430", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002255", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002203", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002428", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002211" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002479", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/BFO_0000066" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002449", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002630", "http://purl.obolibrary.org/obo/RO_0002333" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002429", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004035", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002305" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002448", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002211", "http://purl.obolibrary.org/obo/RO_0002333" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002131" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004034", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002304" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002216", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004031", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002432", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000066" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000062", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000062" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000063", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000063" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002131", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002596", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002211" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002450", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002629", "http://purl.obolibrary.org/obo/RO_0002333" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002597", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002566", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002411", "http://purl.obolibrary.org/obo/RO_0002333" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000066" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002598", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002314", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0000052", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002327", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002202" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002211", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002578", "http://purl.obolibrary.org/obo/RO_0002578" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002314", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002314", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002329", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002215" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004032", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0004047" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002263", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002411" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0000057" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004033", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0004046" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002428", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/RO_0002211" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002430", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002429", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002213", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002212", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002584", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002215" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002264", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002418" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002327", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002017" ] + } ] } ] } \ No newline at end of file diff --git a/pato.obo b/pato.obo index ee942a4c..e8a41468 100644 --- a/pato.obo +++ b/pato.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: pato/releases/2019-09-13/pato-base.owl +data-version: pato/releases/2019-10-29/pato.obo date: 07:02:2018 10:27 saved-by: segerdel auto-generated-by: OBO-Edit 2.3.1 @@ -14,7 +14,7 @@ subsetdef: relational_slim "Relational slim: types of quality that require an ad subsetdef: scalar_slim "Scalar slim" subsetdef: value_slim "Value slim" default-namespace: quality -ontology: pato/pato-base +ontology: pato.obo [Term] id: PATO:0000000 @@ -12292,7 +12292,6 @@ def: "A curvature quality inhering in a bearer by virtue of the bearer's being c comment: TODO: obsolete, definition too ambiguous. subset: cell_quality subset: value_slim -synonym: "flared" EXACT [] is_a: PATO:0000406 ! curved [Term] @@ -17856,7 +17855,7 @@ creation_date: 2012-05-03T11:29:38Z [Term] id: PATO:0002372 -name: grand multi[arous +name: grand multiparous def: "A viviparous organism that has given birth five or more times." [wiki:http\://en.wikipedia.org/wiki/Parity_(biology)] subset: value_slim is_a: PATO:0002369 ! multiparous @@ -20371,11 +20370,53 @@ is_a: PATO:0000383 ! female property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-16T22:52:49Z xsd:dateTime +[Term] +id: PATO:0040021 +name: unpaired +def: "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.." [https://orcid.org/0000-0003-3162-7490] +is_a: PATO:0000467 ! present +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 + +[Term] +id: PATO:0040022 +name: flared +def: "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape." [] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:49:07Z xsd:dateTime + +[Term] +id: PATO:0040023 +name: distomedial orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body." [https://en.wiktionary.org/wiki/distomedial] +synonym: "disto-medial orientation" EXACT [] +synonym: "distomedial" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:54:33Z xsd:dateTime + +[Term] +id: PATO:0040024 +name: bilaterally paired +def: "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism." [https://orcid.org/0000-0003-3162-7490] +synonym: "paired" BROAD [] +is_a: PATO:0000467 ! present +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 + [Term] id: PATO:0040025 name: lesioned def: "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present." [NCIT:C3824] is_a: PATO:0000141 ! structure +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 + +[Term] +id: PATO:0040026 +name: structurally discontinuous +def: "A structural quality inhering in a bearer by virtue of the bearer's being marked by interruptions or gaps." [] +comment: This term is intended for use for terms such as MP:0010461 discontinuous pulmonary artery and MP:0004157 interrupted aortic arch. +synonym: "structurally interrupted" EXACT [] +is_a: PATO:0001241 ! physical object quality created_by: http://orcid.org/0000-0001-5208-3432 [Term] diff --git a/pato.owl b/pato.owl index 3253ddda..3fb33239 100644 --- a/pato.owl +++ b/pato.owl @@ -2,16 +2,23 @@ - + OBO-Edit 2.3.1 07:02:2018 10:27 quality @@ -34,31 +41,72 @@ - + + editor preferred term + - + + + example of usage + + + + + + + + has curation status + - + + + definition + definition + - + + + editor note + + + + + + + + + term editor + - + + + alternative term + + + + + + + + + definition source + @@ -68,21 +116,236 @@ + + + + + + + + + + + imported from + + + + + + + + + + + + + + + OBO foundry unique label + + + + + + + + + + - + + term replaced by + - + + An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context. + temporal interpretation + https://github.com/oborel/obo-relations/wiki/ROAndTime + + + + + + + + + + + + + + + + + + + + + + If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL + is a defining property chain axiom + + + + + + + + If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R. + is a defining property chain axiom where second argument is reflexive + - + + 'anterior end of organism' is-opposite-of 'posterior end of organism' + 'increase in temperature' is-opposite-of 'decrease in temperature' + x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). + RO:0002604 + quality + is_opposite_of + true + true + is_opposite_of + is opposite of + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -176,6 +439,14 @@ + + + + + + + + @@ -188,6 +459,30 @@ + + + + + + + + + + + + + + + + + + + + + + + + @@ -196,9 +491,17 @@ + + + + + + - + + consider + @@ -214,45 +517,79 @@ + + + + + + + + + + + + - + + has_alternative_id + - + + has_broad_synonym + - + + database_cross_reference + - + + has_exact_synonym + - + + has_narrow_synonym + + + + + + + + has_obo_format_version + - + + has_obo_namespace + - + + has_related_synonym + @@ -264,13 +601,59 @@ - + + in_subset + + + + + + + + + + + + + + + + + + + - + + shorthand + + + + + + + + + + + + + + + + + + + + + + + + + @@ -288,6 +671,7 @@ + is part of @@ -302,12 +686,23 @@ A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'. part_of + + + + + + + BFO:0000050 + external quality part_of part_of + part of part of part_of + + http://www.obofoundry.org/ro/#OBO_REL:part_of @@ -316,6 +711,7 @@ A continuant cannot be part of an occurrent: use 'participates in'. An + has part my body has part my brain (continuant parthood, two material entities) @@ -331,10 +727,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. has_part BFO:0000051 + external quality has_part has_part We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. + has part has part has_part @@ -347,322 +745,6840 @@ A continuant cannot have an occurrent as part: use 'participates in'. - + - - quality - correlates_with - correlates_with + + + + + + + + + + + preceded by + x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. + An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other. + is preceded by + preceded_by + http://www.obofoundry.org/ro/#OBO_REL:preceded_by + + preceded by - + - - + + - - - q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. - quality - decreased_in_magnitude_relative_to - This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'. - decreased_in_magnitude_relative_to + + + + + + + precedes + x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. + + precedes + + + + + + + + + + + + + + + + + + + occurs in + b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t + occurs_in + unfolds in + unfolds_in + BFO:0000066 + external + occurs_in + occurs_in + Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant + + occurs in + occurs in + + + + + + + + site of + [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t + Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant + + contains process + + + + + + + + + + inheres in + this fragility inheres in this vase + this red color inheres in this apple + a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence + A dependent inheres in its bearer at all times for which the dependent exists. + inheres_in + + inheres in + + + + + + + + + bearer of + this apple is bearer of this red color + this vase is bearer of this fragility + a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence + A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist. + bearer_of + is bearer of + + bearer of + + + + + + + + + + + participates in + this blood clot participates in this blood coagulation + this input material (or this output material) participates in this process + this investigator participates in this investigation + a relation between a continuant and a process, in which the continuant is somehow involved in the process + participates_in + participates in + + + + + + + + + + + + + + has participant + this blood coagulation has participant this blood clot + this investigation has participant this investigator + this process has participant this input material (or this output material) + a relation between a process and a continuant, in which the continuant is somehow involved in the process + Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time. + has_participant + http://www.obofoundry.org/ro/#OBO_REL:has_participant + has participant + + + + + + + + + + A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B. + dos + 2017-05-24T09:30:46Z + has regulatory component activity + + + + + + + + + + A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B. + dos + 2017-05-24T09:31:01Z + By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'. + has negative regulatory component activity + + + + + + + + + + A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B. + dos + 2017-05-24T09:31:17Z + By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'. + has positive regulatory component activity + + + + + + + + + dos + 2017-05-24T09:44:33Z + A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B. + has component activity + + + + + + + + + + + w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type. + dos + 2017-05-24T09:49:21Z + has component process + + + + + + + + + + A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function. + dos + 2017-07-19T17:30:36Z + has ligand + + + + + + + + + + dos + 2017-09-17T13:52:24Z + Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2. + directly regulated by - - - q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. - PATOC:CJM + + + Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2. + GOC:dos - + - - - - q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. - quality - different_in_magnitude_relative_to - different_in_magnitude_relative_to + + + + Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1. + dos + 2017-09-17T13:52:38Z + directly negatively regulated by - + - q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. - PATOC:CJM + Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1. + GOC:dos - + - - - - q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear. - cjm - 2009-08-26T02:50:08Z - quality - directly_associated_with - Example: 'Lewy bodies increased number related to dystrophic neurite increased number' (from annotation of PMID:8740227 in http://ccdb.ucsd.edu/1.0/NDPO.owl#ndpo_404). Here the increase in the number of lewy bodies is directly_associated_with the increase in the number of dystrophic neurites. -Association is weaker than correlation or proportionality. These relations may be later added to PATO. - directly_associated_with + + + + Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1. + dos + 2017-09-17T13:52:47Z + directly positively regulated by - + - q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear. - PATOC:cjm - Wikipedia:Association_(statistics) + Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1. + GOC:dos - + - - s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2. - quality - has_cross_section - Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round. - has_cross_section + + + + + A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity. + dos + 2017-09-22T14:14:36Z + This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations. + has effector activity - + - s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2. - PATOC:CJM + A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity. + GOC:dos - + - - - quality - has_dividend_entity - has_dividend_entity + + + + David Osumi-Sutherland + + X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) + ends after - + - - - - - quality - has_dividend_quality - has_dividend_quality + + + + David Osumi-Sutherland + starts_at_end_of + X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) + immediately preceded by - + - - - quality - has_divisor_entity - has_divisor_entity + + + David Osumi-Sutherland + ends_at_start_of + meets + + + X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) + immediately precedes - + + + + + + + + + + + + + + + + + + + + + + x overlaps y if and only if there exists some z such that x has part z and z part of y + http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y) + + + overlaps + + + + + + + + + true + + - - - - - quality - has_divisor_quality - has_divisor_quality + + + + + + + w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type. + The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity. + For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit. + + + has component + - + - - - - quality - has_ratio_quality - has_ratio_quality + + + + + + + + x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y + Chris Mungall + David Osumi-Sutherland + Melissa Haendel + Terry Meehan + This is the transitive form of the develops from relation + develops from - + - - quality - has_relative_magnitude - has_relative_magnitude + + + + + + + inverse of develops from + Chris Mungall + David Osumi-Sutherland + Terry Meehan + + develops into - + - - + + + - - - q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. - quality - increased_in_magnitude_relative_to - This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'. - increased_in_magnitude_relative_to + + + + + + + + process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2. + We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit + Chris Mungall + David Hill + Tanya Berardini + + GO + Regulation precludes parthood; the regulatory process may not be within the regulated process. + regulates (processual) + false + RO:0002211 + external + regulates + regulates + regulates + regulates + + + + + + + + + + + Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2. + Chris Mungall + + negatively regulates (process to process) + + RO:0002212 + external + negatively_regulates + negatively_regulates + negatively regulates + negatively regulates + + + + + + + + + + + + + + + + Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2. + Chris Mungall + + positively regulates (process to process) + + RO:0002213 + external + positively_regulates + positively_regulates + positively regulates + positively regulates + + + + + + + + + + + mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974) + osteoclast SubClassOf 'capable of' some 'bone resorption' + A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. + Chris Mungall + has function realized in + + + For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)". + RO_0000053 some (RO_0000054 only ?Y) + + capable of + + + + + + + + + + + + + + c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p. + Chris Mungall + has function in + RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y)) + capable of part of + + + + + + + + + + true + + + + + + + + + + x actively participates in y if and only if x participates in y and x realizes some active role + Chris Mungall + agent in + actively participates in + + + + + + + + + 'heart development' has active participant some Shh protein + + x has participant y if and only if x realizes some active role that inheres in y + This may be obsoleted and replaced by the original 'has agent' relation + Chris Mungall + has agent + + obsolete has active participant + true + + + + + + + + + + + Chris Mungall + + Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends. + https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 + + A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. + temporally related to + + + + + + + + + + + + + p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p. + Chris Mungall + consumes + + has input + + + + + + + + + + + + + + + + Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong] + + x has developmental contribution from y iff x has some part z such that z develops from y + Chris Mungall + has developmental contribution from + + + + + + + + + + + + + + + inverse of has developmental contribution from + Chris Mungall + + developmentally contributes to + + + + + + + + + + + + + Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p + false + Chris Mungall + In general you should not use this relation to make assertions - use one of the more specific relations below this one + This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from + developmentally preceded by + + + + + + + + + + + + + A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision. + c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes. + acts upstream of + + + + + + + + + + + + + + A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway. + c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process. + affects + acts upstream of or within + + + + + + + + + + + Inverse of developmentally preceded by + Chris Mungall + developmentally succeeded by + + + + + + + + + + + cjm + holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y + causally upstream of, positive effect + + + + + + + + + + + cjm + holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y + causally upstream of, negative effect + + + + + + + + + + + + + + + + q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w. + Because part_of is transitive, inheres in is a sub-relation of inheres in part of + Chris Mungall + + + inheres in part of + + + + + + + + + + true + + + + + + + + A mereological relationship or a topological relationship + Chris Mungall + Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships + + mereotopologically related to + + + + + + + + A relationship that holds between entities participating in some developmental process (GO:0032502) + Chris Mungall + Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development + developmentally related to + + + + + + + + + + + + + + + + + + a particular instances of akt-2 enables some instance of protein kinase activity + Chris Mungall + catalyzes + executes + has + is catalyzing + is executing + This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized. + This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time. + enables + + + + + + + + A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities. + Chris Mungall + This is a grouping relation that collects relations used for the purpose of connecting structure and function + functionally related to + + + + + + + + + + + + + this relation holds between c and p when c is part of some c', and c' is capable of p. + Chris Mungall + false + part of structure that is capable of + + + + + + + + + true + + + + + + + + + + + + + + + + + + c involved_in p if and only if c enables some process p', and p' is part of p + Chris Mungall + actively involved in + enables part of + involved in + + + + + + + + + + + inverse of enables + Chris Mungall + enabled by + + + + + + + + + + + + inverse of regulates + Chris Mungall + regulated by (processual) + + regulated by + + + + + + + + + inverse of negatively regulates + Chris Mungall + + negatively regulated by + + + + + + + + + inverse of positively regulates + Chris Mungall + + positively regulated by + + + + + + + + + + inverse of has input + Chris Mungall + + + input of + + + + + + + + + + + + x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction). + Chris Mungall + has developmental potential involving + + + + + + + + + + x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y + Chris Mungall + has potential to developmentally contribute to + + + + + + + + + + x has the potential to develop into y iff x develops into y or if x is capable of developing into y + Chris Mungall + has potential to develop into + + + + + + + + + + x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y + Chris Mungall + has potential to directly develop into + + + + + + + + + + + + inverse of upstream of + Chris Mungall + causally downstream of + + + + + + + + + + + + Chris Mungall + immediately causally downstream of + + + + + + + + + This relation groups causal relations between material entities and causal relations between processes + This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. + +To define causal relations in an activity-flow type network, we make use of 3 primitives: + + * Temporal: how do the intervals of the two occurrents relate? + * Is the causal relation regulatory? + * Is the influence positive or negative + +The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. + +For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. + +For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. + +Each of these 3 primitives can be composed to yield a cross-product of different relation types. + Chris Mungall + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causally related to + + + + + + + + + + + + p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain + Chris Mungall + causally upstream of + + + + + + + + + + + p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q. + Chris Mungall + + immediately causally upstream of + + + + + + + + + + + p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q. + We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2 + Chris Mungall + influences (processual) + affects + causally upstream of or within + + + + + + + + + + inverse of causally upstream of or within + Chris Mungall + + + causally downstream of or within + + + + + + + + + + + + + + + + + + c involved in regulation of p if c is involved in some p' and p' regulates some p + Chris Mungall + involved in regulation of + + + + + + + + + + + + + + + + + c involved in regulation of p if c is involved in some p' and p' positively regulates some p + Chris Mungall + + involved in positive regulation of + + + + + + + + + + + + + + + + + c involved in regulation of p if c is involved in some p' and p' negatively regulates some p + Chris Mungall + + involved in negative regulation of + + + + + + + + + + + c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p + OWL does not allow defining object properties via a Union + Chris Mungall + involved in or reguates + involved in or involved in regulation of + + + + + + + + + + + + + + A protein that enables activity in a cytosol. + c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure. + Chris Mungall + executes activity in + enables activity in + + is active in + + + + + + + + + true + + + + + c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure. + GOC:cjm + GOC:dos + + + + + + + + + + + A relationship that holds between two entities in which the processes executed by the two entities are causally connected. + Considering relabeling as 'pairwise interacts with' + This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact. + Chris Mungall + Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules. + in pairwise interaction with + + interacts with + http://purl.obolibrary.org/obo/MI_0914 + https://github.com/oborel/obo-relations/wiki/InteractionRelations + + + + + + + + + + An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other. + Chris Mungall + binds + molecularly binds with + molecularly interacts with + + http://purl.obolibrary.org/obo/MI_0915 + + + + + + + + + Axiomatization to GO to be added later + Chris Mungall + An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y. + phosphorylates + + + + + + + + + + + + + + + Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. + Chris Mungall + molecularly controls + activity directly regulates activity of + + + + + + + + + + + + + + Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B. + Chris Mungall + inhibits + molecularly decreases activity of + activity directly negatively regulates activity of + + + + + + + + + + + + + + Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B. + Chris Mungall + activates + molecularly increases activity of + activity directly positively regulates activity of + + + + + + + + Chris Mungall + This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning. + helper property (not for use in curation) + + + + + + + + + + + 'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate' + x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y. + Chris Mungall + + + + composed primarily of + + + + + + + + + + + + + + p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c. + Chris Mungall + + has part that occurs in + + + + + + + + + true + + + + + + + + + Chris Mungall + is kinase activity + + + + + + + + + + A relationship between a material entity and a process where the material entity has some causal role that influences the process + + causal agent in process + + + + + + + + + + + p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q. + Chris Mungall + + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causal relation between processes + + + + + + + + Chris Mungall + depends on + + + + + + + + + + + + The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch + Chris Mungall + + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causal relation between material entities + + + + + + + + + + Chris Mungall + + causally influenced by (material entity to material entity) + causally influenced by + + + + + + + + + Chris Mungall + interaction relation helper property + + https://github.com/oborel/obo-relations/wiki/InteractionRelations + + + + + + + + + Chris Mungall + molecular interaction relation helper property + + + + + + + + + + + + + + + + + + + Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b + Chris Mungall + + causally influences (material entity to material entity) + causally influences + + + + + + + + + + Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2. + Chris Mungall + + directly regulates (processual) + + directly regulates + + + + + + + + + + + + + + gland SubClassOf 'has part structure that is capable of' some 'secretion by cell' + s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p + Chris Mungall + has part structure that is capable of + + + + + + + + + + + A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + Chris Mungall + + causal relation between material entity and a process + + + + + + + + + + + + + pyrethroid -> growth + Holds between c and p if and only if c is capable of some activity a, and a regulates p. + + capable of regulating + + + + + + + + + + + + + Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p. + + capable of negatively regulating + + + + + + + + + + + + + renin -> arteriolar smooth muscle contraction + Holds between c and p if and only if c is capable of some activity a, and a positively regulates p. + + capable of positively regulating + + + + + + + + + Inverse of 'causal agent in process' + + process has causal agent + + + + + + + + + + Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2. + + directly positively regulates (process to process) + + directly positively regulates + + + + + + + + + + Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2. + + directly negatively regulates (process to process) + + directly negatively regulates + + + + + + + + + + + + + Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P. + cjm + 2018-01-25T23:20:13Z + enables subfunction + + + + + + + + + + + + + + cjm + 2018-01-26T23:49:30Z + acts upstream of or within, positive effect + + + + + + + + + + + + + + + cjm + 2018-01-26T23:49:51Z + acts upstream of or within, negative effect + + + + + + + + + + + + + + c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive + + cjm + 2018-01-26T23:53:14Z + acts upstream of, positive effect + + + + + + + + + + + + + + + c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative + + cjm + 2018-01-26T23:53:22Z + acts upstream of, negative effect + + + + + + + + + + + cjm + 2018-03-13T23:55:05Z + causally upstream of or within, negative effect + + + + + + + + + + cjm + 2018-03-13T23:55:19Z + causally upstream of or within, positive effect + + + + + + + + quality + correlates_with + correlates_with + + + + + + + + + + + + q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + quality + decreased_in_magnitude_relative_to + This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'. + decreased_in_magnitude_relative_to + + + + + q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + PATOC:CJM + + + + + + + + + + q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + quality + different_in_magnitude_relative_to + different_in_magnitude_relative_to + + + + + q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + PATOC:CJM + + + + + + + + + + q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear. + cjm + 2009-08-26T02:50:08Z + quality + directly_associated_with + Example: 'Lewy bodies increased number related to dystrophic neurite increased number' (from annotation of PMID:8740227 in http://ccdb.ucsd.edu/1.0/NDPO.owl#ndpo_404). Here the increase in the number of lewy bodies is directly_associated_with the increase in the number of dystrophic neurites. +Association is weaker than correlation or proportionality. These relations may be later added to PATO. + directly_associated_with + + + + + q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear. + PATOC:cjm + Wikipedia:Association_(statistics) + + + + + + + + s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2. + quality + has_cross_section + Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round. + has_cross_section + + + + + s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2. + PATOC:CJM + + + + + + + + + quality + has_dividend_entity + has_dividend_entity + + + + + + + + + + + quality + has_dividend_quality + has_dividend_quality + + + + + + + + + quality + has_divisor_entity + has_divisor_entity + + + + + + + + + + + quality + has_divisor_quality + has_divisor_quality + + + + + + + + + + quality + has_ratio_quality + has_ratio_quality + + + + + + + + quality + has_relative_magnitude + has_relative_magnitude + + + + + + + + + + + + q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + quality + increased_in_magnitude_relative_to + This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'. + increased_in_magnitude_relative_to + + + + + q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + PATOC:CJM + + + + + + + + + + q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear. + cjm + 2009-08-26T02:50:24Z + quality + inversely_associated_with + Association is weaker than correlation or proportionality. These relations may be later added to PATO. + inversely_associated_with + + + + + q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear. + PATOC:cjm + Wikipedia:Association_(statistics) + + + + + + + + pato.ontology + is_magnitude_of + is_magnitude_of + + + + + + + + pato.ontology + is_measurement_of + is_measurement_of + + + + + + + + pato.ontology + is_unit_of + is_unit_of + + + + + + + + quality + realized_by + realized_by + + + + + + + + q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e. + quality + reciprocal_of + There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality. + reciprocal_of + + + + + q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e. + PATOC:CJM + + + + + + + + + + q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + quality + similar_in_magnitude_relative_to + similar_in_magnitude_relative_to + + + + + q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. + PATOC:CJM + + + + + + + + monadic_form_of + quality + singly_occurring_form_of + PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them. + singly_occurring_form_of + + + + + + + + quality + towards + Relation binding a relational quality or disposition to the relevant type of entity. + towards + + + + + + + + + + + + + + + + + + + + + + + + + + An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts. + continuant + + + + + + + + + + + + + + + + + + + + An entity that has temporal parts and that happens, unfolds or develops through time. + occurrent + + + + + + + + + + + + + + + + A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything. + independent continuant + + + + + + + + + An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. + process + + + + + + + + + + + + + + + quality + + + + + + + + + + + + + + + A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same. + specifically dependent continuant + + + + + + + + + An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. + material entity + + + + + + + + + + anatomical entity + + + + + + + + + + connected anatomical structure + + + + + + + + + + + material anatomical entity + + + + + + + + + + cell part (CARO) + cell part + + + + + + + + + organism or virus or viroid + + + + + + + + + biological entity + + + + + + + + + + + + + + + + cell + + + + + + + + + A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process. + molecular process + GO:0005554 + molecular function + molecular_function + GO:0003674 + + + + + + + + + Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex. + molecular_function + + + + + A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process. + GOC:pdt + + + + + + + + + Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. + Wikipedia:Enzyme + enzyme activity + molecular_function + GO:0003824 + + + + + + + catalytic activity + + + + + Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. + GOC:vw + ISBN:0198506732 + + + + + enzyme activity + GOC:dph + GOC:tb + + + + + + + + + + true + + + + + + + + + Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. + receptor binding + Wikipedia:Ligand_(biochemistry) + receptor ligand + molecular_function + receptor-associated protein activity + GO:0005102 + + + + + + Where appropriate, also consider annotating to 'receptor agonist activity ; GO:0048018'. + signaling receptor binding + + + + + Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. + GOC:bf + GOC:ceb + ISBN:0198506732 + + + + + + + + + The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule. + Wikipedia:Binding_(molecular) + ligand + molecular_function + GO:0005488 + + + + Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children. + binding + + + + + The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule. + GOC:ceb + GOC:mah + ISBN:0198506732 + + + + + + + + + Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). + GO:0001948 + GO:0045308 + MIPS_funcat:16.01 + MIPS_funcat:18.01.07 + Reactome:R-HSA-170835 + Reactome:R-HSA-170846 + protein amino acid binding + glycoprotein binding + molecular_function + GO:0005515 + + + + + + + protein binding + + + + + Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). + GOC:go_curators + + + + + Reactome:R-HSA-170835 + An anchoring protein, ZFYVE9 (SARA), recruits SMAD2/3 + + + + + Reactome:R-HSA-170846 + TGFBR2 recruits TGFBR1 + + + + + + + + A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome). + GO:0008372 + NIF_Subcellular:sao1337158144 + cell or subcellular entity + cellular component + cellular_component + subcellular entity + GO:0005575 + + + + + + + + + Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. + cellular_component + + + + + A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome). + GOC:pdt + NIF_Subcellular:sao1337158144 + + + + + subcellular entity + NIF_Subcellular:nlx_subcell_100315 + + + + + + + + + The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. + Wikipedia:Intracellular + internal to cell + protoplasm + cellular_component + nucleocytoplasm + protoplast + GO:0005622 + + + + + + intracellular + + + + + The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. + ISBN:0198506732 + + + + + nucleocytoplasm + GOC:mah + + + + + protoplast + GOC:mah + + + + + + + + + The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. + cell and encapsulating structures + NIF_Subcellular:sao1813327414 + Wikipedia:Cell_(biology) + cellular_component + GO:0005623 + + + + cell + + + + + The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. + GOC:go_curators + + + + + + + + + + A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. + + MIPS_funcat:70.10 + NIF_Subcellular:sao1702920020 + Wikipedia:Cell_nucleus + cell nucleus + horsetail nucleus + cellular_component + GO:0005634 + + + + + + + + + + + + nucleus + nucleus + + + + + A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. + GOC:go_curators + + + + + horsetail nucleus + GOC:al + GOC:mah + GOC:vw + PMID:15030757 + + + + + + + + + + + + + + + The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. + GO:0005904 + juxtamembrane + NIF_Subcellular:sao1663586795 + Wikipedia:Cell_membrane + cell membrane + cellular membrane + cytoplasmic membrane + plasmalemma + bacterial inner membrane + inner endospore membrane + plasma membrane lipid bilayer + cellular_component + GO:0005886 + + + + + + + + + + plasma membrane + + + + + The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. + ISBN:0716731363 + + + + + cellular membrane + NIF_Subcellular:sao6433132645 + + + + + plasma membrane lipid bilayer + GOC:mah + + + + + + + + + + + + + + + + A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body. + GO:0072372 + FMA:67181 + NIF_Subcellular:sao787716553 + Wikipedia:Cilium + eukaryotic flagellum + microtubule-based flagellum + primary cilium + cellular_component + flagellum + GO:0005929 + + + + Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms. + cilium + + + + + A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body. + GOC:cilia + GOC:curators + GOC:kmv + GOC:vw + ISBN:0198547684 + PMID:16824949 + PMID:17009929 + PMID:20144998 + + + + + + + + + The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4). + phosphorus metabolism + biological_process + GO:0006793 + + phosphorus metabolic process + + + + + The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4). + GOC:ai + + + + + + + + + The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid. + MIPS_funcat:01.04 + phosphate metabolism + biological_process + phosphate metabolic process + GO:0006796 + phosphate-containing compound metabolic process + + + + + The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid. + GOC:ai + + + + + + + + + Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + Wikipedia:Cell_signaling + biological_process + GO:0007154 + + + cell communication + + + + + Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. + GO:0023033 + MIPS_funcat:30 + Wikipedia:Signal_transduction + signaling cascade + signalling cascade + biological_process + signaling pathway + signalling pathway + GO:0007165 + + + + + + + Note that signal transduction is defined broadly to include a ligand interacting with a receptor, downstream signaling steps and a response being triggered. A change in form of the signal in every step is not necessary. Note that in many cases the end of this process is regulation of the initiation of transcription. Note that specific transcription factors may be annotated to this term, but core/general transcription machinery such as RNA polymerase should not. + signal transduction + + + + + The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. + GOC:go_curators + GOC:mtg_signaling_feb11 + + + + + signalling pathway + GOC:mah + + + + + + + + + A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. + janelomax + 2012-09-19T15:05:24Z + GO:0000004 + GO:0007582 + GO:0044699 + Wikipedia:Biological_process + biological process + physiological process + biological_process + single organism process + single-organism process + GO:0008150 + + + + + + + + + + Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. + biological_process + + + + + A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. + GOC:pdt + + + + + + + + + The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. + janelomax + 2012-10-17T15:46:40Z + GO:0044236 + GO:0044710 + MIPS_funcat:01 + Wikipedia:Metabolism + metabolism + metabolic process resulting in cell growth + metabolism resulting in cell growth + multicellular organism metabolic process + biological_process + single-organism metabolic process + GO:0008152 + + + + + + Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions. + metabolic process + + + + + The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. + GOC:go_curators + ISBN:0198547684 + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GO:0044252 + down regulation of metabolic process + down-regulation of metabolic process + downregulation of metabolic process + negative regulation of metabolism + negative regulation of organismal metabolism + inhibition of metabolic process + inhibition of organismal metabolic process + negative regulation of multicellular organismal metabolic process + biological_process + GO:0009892 + negative regulation of metabolic process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GO:0044253 + positive regulation of metabolism + up regulation of metabolic process + up-regulation of metabolic process + upregulation of metabolic process + activation of metabolic process + positive regulation of multicellular organismal metabolic process + positive regulation of organismal metabolism + stimulation of metabolic process + stimulation of organismal metabolic process + up-regulation of organismal metabolic process + biological_process + GO:0009893 + positive regulation of metabolic process + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of signal transduction. + GO:0035466 + biological_process + regulation of signaling pathway + regulation of signalling pathway + GO:0009966 + regulation of signal transduction + + + + + Any process that modulates the frequency, rate or extent of signal transduction. + GOC:sm + + + + + regulation of signalling pathway + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of signal transduction. + GO:0035468 + up regulation of signal transduction + up-regulation of signal transduction + upregulation of signal transduction + activation of signal transduction + stimulation of signal transduction + biological_process + positive regulation of signaling pathway + positive regulation of signalling pathway + GO:0009967 + positive regulation of signal transduction + + + + + Any process that activates or increases the frequency, rate or extent of signal transduction. + GOC:sm + + + + + positive regulation of signalling pathway + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction. + GO:0035467 + down regulation of signal transduction + down-regulation of signal transduction + downregulation of signal transduction + inhibition of signal transduction + biological_process + negative regulation of signaling pathway + negative regulation of signalling pathway + GO:0009968 + negative regulation of signal transduction + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction. + GOC:sm + + + + + negative regulation of signalling pathway + GOC:mah + + + + + + + + + Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + janelomax + 2012-12-11T16:56:55Z + GO:0008151 + GO:0044763 + GO:0050875 + cell physiology + cellular physiological process + cell growth and/or maintenance + biological_process + single-organism cellular process + GO:0009987 + + cellular process + + + + + Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GOC:go_curators + GOC:isa_complete + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + biological_process + GO:0010562 + positive regulation of phosphorus metabolic process + + + + + Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + GOC:dph + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + biological_process + GO:0010563 + negative regulation of phosphorus metabolic process + + + + + Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + GOC:dph + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + biological_process + GO:0010646 + regulation of cell communication + + + + + Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + GOC:dph + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + biological_process + GO:0010647 + positive regulation of cell communication + + + + + Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + GOC:dph + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + biological_process + GO:0010648 + negative regulation of cell communication + + + + + Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + GOC:dph + GOC:tb + + + + + + + + + A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. + Wikipedia:Biological_membrane + cellular_component + GO:0016020 + + + + + + + + + membrane + + + + + A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. + GOC:dos + GOC:mah + ISBN:0815316194 + + + + + + + + + + + + + + + + + + true + + + Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + Reactome:R-HSA-6788855 + Reactome:R-HSA-6788867 + phosphokinase activity + molecular_function + GO:0016301 + + + + + + Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term. + kinase activity + + + + + Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + ISBN:0198506732 + + + + + Reactome:R-HSA-6788855 + FN3KRP phosphorylates PsiAm, RibAm + + + + + Reactome:R-HSA-6788867 + FN3K phosphorylates ketosamines + + + + + + + + + The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. + Wikipedia:Phosphorylation + biological_process + GO:0016310 + + + phosphorylation + + + + + The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. + ISBN:0198506732 + + + + + + + + + Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. + EC:2 + Reactome:R-HSA-1483089 + Reactome:R-HSA-1483186 + Reactome:R-HSA-5668414 + Reactome:R-HSA-6787403 + Reactome:R-HSA-8868783 + molecular_function + GO:0016740 + + + + + + + + + transferase activity + + + + + Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. + ISBN:0198506732 + + + + + Reactome:R-HSA-1483089 + PE is converted to PS by PTDSS2 + + + + + Reactome:R-HSA-1483186 + PC is converted to PS by PTDSS1 + + + + + Reactome:R-HSA-5668414 + TRAF2 ubiquitinates cIAP1,2 in cIAP1,2:TRAF1:TRAF2:TRAF3:NIK + + + + + Reactome:R-HSA-6787403 + GTPBP3 and MTO1 transform uridine-34 yielding 5-taurinomethyluridine-34 in tRNA + + + + + Reactome:R-HSA-8868783 + TSR3 transfers aminocarboxypropyl group from S-adenosylmethionine to N(1)-methylpseudouridine-1248 of 18SE rRNA yielding N(1)-methyl-N(3)-aminocarboxypropylpseudouridine-1248 + + + + + + + + + Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). + EC:2.7 + molecular_function + GO:0016772 + + Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides. + transferase activity, transferring phosphorus-containing groups + + + + + Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). + GOC:jl + ISBN:0198506732 + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + regulation of phosphate metabolism + biological_process + GO:0019220 + regulation of phosphate metabolic process + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GO:0044246 + regulation of metabolism + regulation of multicellular organismal metabolic process + regulation of organismal metabolic process + biological_process + GO:0019222 + + regulation of metabolic process + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GOC:go_curators + + + + + regulation of organismal metabolic process + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a signaling process. + 2010-02-16T09:30:50Z + biological_process + regulation of signaling process + regulation of signalling process + GO:0023051 + regulation of signaling + + + + + Any process that modulates the frequency, rate or extent of a signaling process. + GOC:mtg_signal + + + + + regulation of signaling process + GOC:bf + + + + + regulation of signalling process + GOC:mah + + + + + + + + + The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered. + janelomax + 2010-02-16T09:30:50Z + GO:0023046 + GO:0044700 + biological signaling + signaling process + signalling + biological_process + signalling process + single organism signaling + GO:0023052 + + + + + + Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change. + signaling + + + + + The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered. + GOC:mtg_signal + GOC:mtg_signaling_feb11 + GOC:signaling + + + + + signalling process + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates, maintains or increases the frequency, rate or extent of a signaling process. + 2010-02-16T09:30:50Z + positive regulation of signalling process + biological_process + positive regulation of signaling process + GO:0023056 + positive regulation of signaling + + + + + Any process that activates, maintains or increases the frequency, rate or extent of a signaling process. + GOC:mtg_signal + + + + + positive regulation of signalling process + GOC:mah + + + + + positive regulation of signaling process + GOC:bf + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process. + 2010-02-16T09:30:50Z + biological_process + negative regulation of signaling process + negative regulation of signalling process + GO:0023057 + negative regulation of signaling + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process. + GOC:mtg_signal + + + + + negative regulation of signaling process + GOC:bf + + + + + negative regulation of signalling process + GOC:mah + + + + + + + + + The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed. + MIPS_funcat:18.02.07 + molecular_function + GO:0030545 + receptor regulator activity + + + + + The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed. + GOC:ceb + + + + + + + + + The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased. + receptor activator activity + molecular_function + GO:0030546 + signaling receptor activator activity + + + + + The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased. + GOC:ceb + + + + + + + + + A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules. + intraflagellar transport complex + intraflagellar transport particle + cellular_component + IFT complex + GO:0030990 + + Note that we deem cilia and microtubule-based flagella to be equivalent. + intraciliary transport particle + + + + + A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules. + GOC:cilia + GOC:kmv + PMID:14570576 + PMID:22118932 + PMID:23945166 + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + regulation of cellular metabolism + biological_process + GO:0031323 + regulation of cellular metabolic process + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + down regulation of cellular metabolic process + down-regulation of cellular metabolic process + downregulation of cellular metabolic process + negative regulation of cellular metabolism + inhibition of cellular metabolic process + biological_process + GO:0031324 + negative regulation of cellular metabolic process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + positive regulation of cellular metabolism + up regulation of cellular metabolic process + up-regulation of cellular metabolic process + upregulation of cellular metabolic process + activation of cellular metabolic process + stimulation of cellular metabolic process + biological_process + GO:0031325 + positive regulation of cellular metabolic process + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding. + down regulation of protein binding + down-regulation of protein binding + downregulation of protein binding + inhibition of protein binding + biological_process + GO:0032091 + negative regulation of protein binding + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of protein binding. + up regulation of protein binding + up-regulation of protein binding + upregulation of protein binding + activation of protein binding + stimulation of protein binding + biological_process + GO:0032092 + positive regulation of protein binding + + + + + Any process that activates or increases the frequency, rate or extent of protein binding. + GOC:mah + + + + + + + + + A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together. + GO:0043234 + macromolecular complex + macromolecule complex + protein containing complex + protein complex + protein-protein complex + cellular_component + GO:0032991 + + + + + + A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole. + protein-containing complex + + + + + A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together. + GOC:dos + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + down regulation of kinase activity + down-regulation of kinase activity + downregulation of kinase activity + inhibition of kinase activity + kinase inhibitor + biological_process + GO:0033673 + negative regulation of kinase activity + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + up regulation of kinase activity + up-regulation of kinase activity + upregulation of kinase activity + kinase activator + stimulation of kinase activity + biological_process + GO:0033674 + positive regulation of kinase activity + + + + + Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. + rfoulger + 2010-05-14T01:14:37Z + GO:0007242 + GO:0007243 + GO:0023013 + GO:0023034 + intracellular signaling chain + intracellular protein kinase cascade + intracellular signal transduction pathway + protein kinase cascade + signal transmission via intracellular cascade + biological_process + intracellular signaling cascade + intracellular signaling pathway + signal transduction via intracellular signaling cascade + GO:0035556 + intracellular signal transduction + + + + + The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. + GOC:bf + GOC:jl + GOC:signaling + ISBN:3527303782 + + + + + intracellular signaling chain + ISBN:3527303782 + + + + + intracellular protein kinase cascade + GOC:signaling + + + + + protein kinase cascade + GOC:signaling + + + + + intracellular signaling cascade + GOC:signaling + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule. + biological_process + GO:0042325 + regulation of phosphorylation + + + + + Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule. + GOC:jl + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule. + down regulation of phosphorylation + down-regulation of phosphorylation + downregulation of phosphorylation + inhibition of phosphorylation + biological_process + GO:0042326 + negative regulation of phosphorylation + + + + + Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule. + GOC:jl + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule. + up regulation of phosphorylation + up-regulation of phosphorylation + upregulation of phosphorylation + activation of phosphorylation + stimulation of phosphorylation + biological_process + GO:0042327 + positive regulation of phosphorylation + + + + + Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule. + GOC:jl + + + + + + + + + + A prolongation or process extending from a cell, e.g. a flagellum or axon. + + cell process + cellular process + cellular projection + cellular_component + GO:0042995 + + + + + cell projection + cell projection + + + + + A prolongation or process extending from a cell, e.g. a flagellum or axon. + GOC:jl + http://www.cogsci.princeton.edu/~wn/ + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the activity of an enzyme. + GO:0048554 + MIPS_funcat:18.02.01.01 + positive regulation of enzyme activity + up regulation of enzyme activity + up-regulation of enzyme activity + upregulation of enzyme activity + activation of enzyme activity + activation of metalloenzyme activity + positive regulation of metalloenzyme activity + stimulation of enzyme activity + stimulation of metalloenzyme activity + up regulation of metalloenzyme activity + up-regulation of metalloenzyme activity + upregulation of metalloenzyme activity + biological_process + GO:0043085 + + positive regulation of catalytic activity + + + + + Any process that activates or increases the activity of an enzyme. + GOC:ebc + GOC:jl + GOC:tb + GOC:vw + + + + + positive regulation of enzyme activity + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops or reduces the activity of an enzyme. + GO:0048553 + down regulation of enzyme activity + down-regulation of enzyme activity + down-regulation of metalloenzyme activity + downregulation of enzyme activity + negative regulation of enzyme activity + down regulation of metalloenzyme activity + downregulation of metalloenzyme activity + inhibition of enzyme activity + inhibition of metalloenzyme activity + negative regulation of metalloenzyme activity + biological_process + GO:0043086 + negative regulation of catalytic activity + + + + + Any process that stops or reduces the activity of an enzyme. + GOC:ebc + GOC:jl + GOC:tb + GOC:vw + + + + + negative regulation of enzyme activity + GOC:tb + + + + + + + + + Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane. + NIF_Subcellular:sao1539965131 + Wikipedia:Organelle + cellular_component + GO:0043226 + + + + organelle + + + + + Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane. + GOC:go_curators + + + + + + + + + Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. + NIF_Subcellular:sao414196390 + membrane-enclosed organelle + cellular_component + GO:0043227 + membrane-bounded organelle + + + + + Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. + cellular_component + GO:0043229 + + intracellular organelle + + + + + Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. + GOC:go_curators + + + + + + + + + + Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. + intracellular membrane-enclosed organelle + cellular_component + GO:0043231 + + intracellular membrane-bounded organelle + + + + + Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of protein binding. + biological_process + GO:0043393 + regulation of protein binding + + + + + Any process that modulates the frequency, rate or extent of protein binding. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + biological_process + GO:0043549 + regulation of kinase activity + + + + + Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + GOC:bf + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + jane + 2009-04-21T04:07:27Z + biological_process + GO:0044092 + negative regulation of molecular function + + + + + Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + GO:jl + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + jane + 2009-04-21T04:11:06Z + biological_process + GO:0044093 + positive regulation of molecular function + + + + + Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + GO:jl + + + + + + + + + + The chemical reactions and pathways by which individual cells transform chemical substances. + cellular metabolism + biological_process + intermediary metabolism + GO:0044237 + cellular metabolic process + + + + + The chemical reactions and pathways by which individual cells transform chemical substances. + GOC:go_curators + + + + + intermediary metabolism + GOC:mah + + + + + + + + OBSOLETE. Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. + GO:0005622 + cellular_component + GO:0044424 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + obsolete intracellular part + true + + + + + OBSOLETE. Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. + GOC:jl + + + + + + + + + OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms. + + CL:0000000 + NIF_Subcellular:sao628508602 + cellular subcomponent + cellular_component + protoplast + GO:0044464 + + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + cell part + obsolete cell part + true + + + + + OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms. + GOC:jl + + + + + cellular subcomponent + NIF_Subcellular:sao628508602 + + + + + protoplast + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + down regulation of phosphate metabolic process + down-regulation of phosphate metabolic process + downregulation of phosphate metabolic process + negative regulation of phosphate metabolism + inhibition of phosphate metabolic process + biological_process + GO:0045936 + negative regulation of phosphate metabolic process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + positive regulation of phosphate metabolism + up regulation of phosphate metabolic process + up-regulation of phosphate metabolic process + upregulation of phosphate metabolic process + activation of phosphate metabolic process + stimulation of phosphate metabolic process + biological_process + GO:0045937 + positive regulation of phosphate metabolic process + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + GOC:go_curators + + + + + + + + + + + + + + + + The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands). + midori + 2010-09-13T04:51:59Z + GO:0071884 + receptor agonist activity + signaling molecule + signaling receptor ligand activity + vitamin D receptor activator activity + molecular_function + GO:0048018 + + Definition discussed in https://github.com/geneontology/go-ontology/issues/14220 + receptor ligand activity + + + + + The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands). + GOC:kv + GOC:molecular_function_refactoring + GOC:pdt + + + + + receptor agonist activity + GOC:molecular_function_refactoring + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GO:0043119 + positive regulation of physiological process + up regulation of biological process + up-regulation of biological process + upregulation of biological process + activation of biological process + stimulation of biological process + biological_process + GO:0048518 + + positive regulation of biological process + + + + + Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GO:0043118 + down regulation of biological process + down-regulation of biological process + downregulation of biological process + negative regulation of physiological process + inhibition of biological process + biological_process + GO:0048519 + + negative regulation of biological process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GO:0051242 + positive regulation of cellular physiological process + up regulation of cellular process + up-regulation of cellular process + upregulation of cellular process + activation of cellular process + stimulation of cellular process + biological_process + GO:0048522 + positive regulation of cellular process + + + + + Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GO:0051243 + down regulation of cellular process + down-regulation of cellular process + downregulation of cellular process + negative regulation of cellular physiological process + inhibition of cellular process + biological_process + GO:0048523 + negative regulation of cellular process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + biological_process + GO:0048583 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + regulation of response to stimulus + + + + + Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + up regulation of response to stimulus + up-regulation of response to stimulus + upregulation of response to stimulus + activation of response to stimulus + stimulation of response to stimulus + biological_process + GO:0048584 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + positive regulation of response to stimulus + + + + + Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + down regulation of response to stimulus + down-regulation of response to stimulus + downregulation of response to stimulus + inhibition of response to stimulus + biological_process + GO:0048585 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + negative regulation of response to stimulus + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GO:0050791 + regulation of physiological process + biological_process + GO:0050789 + + + + + regulation of biological process + + + + + Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GOC:ai + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the activity of an enzyme. + GO:0048552 + MIPS_funcat:18.02.01 + regulation of enzyme activity + regulation of metalloenzyme activity + biological_process + GO:0050790 + + regulation of catalytic activity + + + + + Any process that modulates the activity of an enzyme. + GOC:ai + GOC:ebc + GOC:vw + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GO:0051244 + regulation of cellular physiological process + biological_process + GO:0050794 + regulation of cellular process + + + + + Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GOC:go_curators + + + + + + + + + Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. + GO:0051869 + MIPS_funcat:34.11 + physiological response to stimulus + biological_process + GO:0050896 + + + + + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + response to stimulus + + + + + Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. + GOC:ai + GOC:bf + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + biological_process + GO:0051098 + regulation of binding + + + + + Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + up regulation of binding + up-regulation of binding + upregulation of binding + activation of binding + stimulation of binding + biological_process + GO:0051099 + positive regulation of binding + + + + + Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + down regulation of binding + down-regulation of binding + downregulation of binding + inhibition of binding + biological_process + GO:0051100 + negative regulation of binding + + + + + Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + regulation of phosphorus metabolism + biological_process + GO:0051174 + regulation of phosphorus metabolic process + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. + transferase regulator + biological_process + GO:0051338 + + This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. + regulation of transferase activity + + + + + Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. + EC:2.-.-.- + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. + transferase activator + up regulation of transferase activity + up-regulation of transferase activity + upregulation of transferase activity + activation of transferase activity + stimulation of transferase activity + biological_process + GO:0051347 + + This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. + positive regulation of transferase activity + + + + + Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. + down regulation of transferase activity + down-regulation of transferase activity + downregulation of transferase activity + transferase inhibitor + inhibition of transferase activity + biological_process + GO:0051348 + + This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. + negative regulation of transferase activity + + + + + Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. + GOC:ai + + + + + + + + + + Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell. + biological_process + GO:0051716 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + cellular response to stimulus + + + + + Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell. + GOC:bf + GOC:jl + + + + + + + + + Any process that modulates a measurable attribute of any biological process, quality or function. + regulation + biological_process + GO:0065007 + + + biological regulation + + + + + Any process that modulates a measurable attribute of any biological process, quality or function. + GOC:dph + GOC:isa_complete + GOC:mah + GOC:pr + GOC:vw + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + regulation of a molecular function + biological_process + GO:0065009 + + + + regulation of molecular function + + + + + Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + GOC:isa_complete + + + + + + + + + The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures. + midori + 2010-10-04T01:51:47Z + cellular_component + GO:0071944 + + cell periphery + + + + + The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + A membrane that is a (regional) part of the plasma membrane. + davidos + 2014-03-06T11:55:32Z + region of plasma membrane + cellular_component + GO:0098590 + + Note that this term should not be used for direct manual annotation as it should always be possible to choose a more specific subclass. + plasma membrane region + + + + + A membrane that is a (regional) part of the plasma membrane. + GOC:dos + + + + + + + + + + + + + + + A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators. + molecular_function + GO:0098772 + + molecular function regulator + - + - q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. - PATOC:CJM + A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators. + GOC:dos + GOC:pt - + - - - - q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear. - cjm - 2009-08-26T02:50:24Z - quality - inversely_associated_with - Association is weaker than correlation or proportionality. These relations may be later added to PATO. - inversely_associated_with - + + + + + + + + + + + + + + + + + + + + Any protein complex that is part of a membrane. + cellular_component + GO:0098796 + + membrane protein complex + - + - q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear. - PATOC:cjm - Wikipedia:Association_(statistics) + Any protein complex that is part of a membrane. + GOC:dos - + - - pato.ontology - is_magnitude_of - is_magnitude_of - + + + + + + + + + + + + + + + + + + + + Any protein complex that is part of the plasma membrane. + cellular_component + GO:0098797 + plasma membrane protein complex + + + + + Any protein complex that is part of the plasma membrane. + GOC:dos + - + - - pato.ontology - is_measurement_of - is_measurement_of - + + + A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. + kmv + 2019-08-12T18:01:37Z + cellular_component + GO:0110165 + cellular anatomical entity + + + + + A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. + GOC:kmv + - + - - pato.ontology - is_unit_of - is_unit_of - + + + + + + + + + + + + + + + + + + + + A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon. + kchris + 2017-03-21T17:26:07Z + cellular_component + GO:0120025 + plasma membrane bounded cell projection + + + + + A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon. + GOC:krc + - + - - quality - realized_by - realized_by - + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor. + bf + 2012-02-22T11:40:53Z + regulation of receptor ligand + biological_process + GO:1900120 + regulation of receptor binding + + + + + Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor. + GOC:TermGenie + GOC:signaling + + + + + regulation of receptor ligand + GOC:TermGenie + - + - - q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e. - quality - reciprocal_of - There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality. - reciprocal_of - + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor. + bf + 2012-02-22T11:40:57Z + down regulation of receptor binding + down-regulation of receptor binding + downregulation of receptor binding + inhibition of receptor binding + inhibition of receptor ligand + biological_process + down regulation of receptor-associated protein activity + GO:1900121 + negative regulation of receptor binding + - + - q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e. - PATOC:CJM + Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor. + GOC:TermGenie + GOC:signaling + + + + + down regulation of receptor binding + GOC:TermGenie + + + + + down-regulation of receptor binding + GOC:TermGenie + + + + + downregulation of receptor binding + GOC:TermGenie + + + + + inhibition of receptor binding + GOC:TermGenie + + + + + inhibition of receptor ligand + GOC:TermGenie + + + + + down regulation of receptor-associated protein activity + GOC:TermGenie - + - - - - q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. - quality - similar_in_magnitude_relative_to - similar_in_magnitude_relative_to - + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor. + bf + 2012-02-22T11:41:00Z + up regulation of receptor binding + upregulation of receptor binding + activation of receptor binding + biological_process + GO:1900122 + positive regulation of receptor binding + - + - q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale. - PATOC:CJM + Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor. + GOC:TermGenie + GOC:signaling + + + + + up regulation of receptor binding + GOC:TermGenie + + + + + upregulation of receptor binding + GOC:TermGenie + + + + + activation of receptor binding + GOC:TermGenie - + - - monadic_form_of - quality - singly_occurring_form_of - PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them. - singly_occurring_form_of - + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of intracellular signal transduction. + bf + 2013-12-02T11:32:52Z + GO:0010627 + regulation of intracellular signaling cascade + regulation of intracellular signaling chain + regulation of intracellular protein kinase cascade + regulation of intracellular signal transduction pathway + regulation of signal transmission via intracellular cascade + biological_process + regulation of intracellular signaling pathway + regulation of signal transduction via intracellular signaling cascade + GO:1902531 + regulation of intracellular signal transduction + + + + + Any process that modulates the frequency, rate or extent of intracellular signal transduction. + GOC:TermGenie + GOC:dph + GOC:signaling + GOC:tb + + + + + regulation of intracellular signaling cascade + GOC:TermGenie + + + + + regulation of intracellular signaling chain + GOC:TermGenie + + + + + regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + regulation of intracellular signaling pathway + GOC:TermGenie + + + + + regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + - + - - quality - towards - Relation binding a relational quality or disposition to the relevant type of entity. - towards - + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of intracellular signal transduction. + bf + 2013-12-02T11:33:01Z + GO:0010741 + down regulation of intracellular signal transduction + down regulation of intracellular signaling chain + down-regulation of intracellular signal transduction + down-regulation of intracellular signaling chain + downregulation of intracellular signal transduction + downregulation of intracellular signaling chain + negative regulation of intracellular protein kinase cascade + negative regulation of intracellular signaling cascade + negative regulation of intracellular signaling chain + down regulation of intracellular signal transduction pathway + down regulation of intracellular signaling cascade + down regulation of signal transmission via intracellular cascade + down-regulation of intracellular signal transduction pathway + downregulation of intracellular signal transduction pathway + downregulation of intracellular signaling cascade + downregulation of signal transmission via intracellular cascade + inhibition of intracellular signal transduction + inhibition of intracellular signal transduction pathway + inhibition of intracellular signaling cascade + inhibition of intracellular signaling chain + inhibition of signal transmission via intracellular cascade + negative regulation of intracellular signal transduction pathway + negative regulation of signal transmission via intracellular cascade + biological_process + down regulation of intracellular signaling pathway + down regulation of signal transduction via intracellular signaling cascade + down-regulation of intracellular signaling cascade + down-regulation of intracellular signaling pathway + down-regulation of signal transduction via intracellular signaling cascade + down-regulation of signal transmission via intracellular cascade + downregulation of intracellular signaling pathway + downregulation of signal transduction via intracellular signaling cascade + inhibition of intracellular signaling pathway + inhibition of signal transduction via intracellular signaling cascade + negative regulation of intracellular signaling pathway + negative regulation of signal transduction via intracellular signaling cascade + GO:1902532 + negative regulation of intracellular signal transduction + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of intracellular signal transduction. + GOC:TermGenie + GOC:dph + GOC:signaling + GOC:tb + + + + + down regulation of intracellular signal transduction + GOC:TermGenie + + + + + down regulation of intracellular signaling chain + GOC:TermGenie + + + + + down-regulation of intracellular signal transduction + GOC:TermGenie + + + + + down-regulation of intracellular signaling chain + GOC:TermGenie + + + + + downregulation of intracellular signal transduction + GOC:TermGenie + + + + + downregulation of intracellular signaling chain + GOC:TermGenie + + + + + negative regulation of intracellular signaling cascade + GOC:TermGenie + + + + + negative regulation of intracellular signaling chain + GOC:TermGenie + + + + + down regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + down regulation of intracellular signaling cascade + GOC:TermGenie + + + + + down regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + down-regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + downregulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + downregulation of intracellular signaling cascade + GOC:TermGenie + + + + + downregulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + inhibition of intracellular signal transduction + GOC:TermGenie + + + + + inhibition of intracellular signal transduction pathway + GOC:TermGenie + + + + + inhibition of intracellular signaling cascade + GOC:TermGenie + + + + + inhibition of intracellular signaling chain + GOC:TermGenie + + + + + inhibition of signal transmission via intracellular cascade + GOC:TermGenie + + + + + negative regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + negative regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + down regulation of intracellular signaling pathway + GOC:TermGenie + + + + + down regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + down-regulation of intracellular signaling cascade + GOC:TermGenie + + + + + down-regulation of intracellular signaling pathway + GOC:TermGenie + + + + + down-regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + down-regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + downregulation of intracellular signaling pathway + GOC:TermGenie + + + + + downregulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + inhibition of intracellular signaling pathway + GOC:TermGenie + + + + + inhibition of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + negative regulation of intracellular signaling pathway + GOC:TermGenie + + + + + negative regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + - + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of intracellular signal transduction. + bf + 2013-12-02T11:33:10Z + GO:0010740 + positive regulation of intracellular signaling chain + up regulation of intracellular signal transduction + up regulation of intracellular signaling chain + up-regulation of intracellular signal transduction + up-regulation of intracellular signaling chain + upregulation of intracellular signal transduction + upregulation of intracellular signaling chain + activation of intracellular signal transduction + activation of intracellular signal transduction pathway + activation of intracellular signaling cascade + activation of intracellular signaling chain + activation of signal transmission via intracellular cascade + positive regulation of intracellular protein kinase cascade + positive regulation of intracellular signal transduction pathway + positive regulation of signal transmission via intracellular cascade + up regulation of intracellular signal transduction pathway + up regulation of signal transmission via intracellular cascade + up-regulation of intracellular signal transduction pathway + up-regulation of signal transmission via intracellular cascade + upregulation of intracellular signal transduction pathway + upregulation of signal transmission via intracellular cascade + biological_process + activation of intracellular signaling pathway + activation of signal transduction via intracellular signaling cascade + positive regulation of intracellular signaling cascade + positive regulation of intracellular signaling pathway + positive regulation of signal transduction via intracellular signaling cascade + up regulation of intracellular signaling cascade + up regulation of intracellular signaling pathway + up regulation of signal transduction via intracellular signaling cascade + up-regulation of intracellular signaling cascade + up-regulation of intracellular signaling pathway + up-regulation of signal transduction via intracellular signaling cascade + upregulation of intracellular signaling cascade + upregulation of intracellular signaling pathway + upregulation of signal transduction via intracellular signaling cascade + GO:1902533 + positive regulation of intracellular signal transduction + + + + + Any process that activates or increases the frequency, rate or extent of intracellular signal transduction. + GOC:BHF + GOC:TermGenie + GOC:dph + GOC:signaling + GOC:tb + + + + + positive regulation of intracellular signaling chain + GOC:TermGenie + + + + + up regulation of intracellular signal transduction + GOC:TermGenie + + + + + up regulation of intracellular signaling chain + GOC:TermGenie + + + + + up-regulation of intracellular signal transduction + GOC:TermGenie + + + + + up-regulation of intracellular signaling chain + GOC:TermGenie + + + + + upregulation of intracellular signal transduction + GOC:TermGenie + + + + + upregulation of intracellular signaling chain + GOC:TermGenie + + + + + activation of intracellular signal transduction + GOC:TermGenie + + + + + activation of intracellular signal transduction pathway + GOC:TermGenie + + + + + activation of intracellular signaling cascade + GOC:TermGenie + + + + + activation of intracellular signaling chain + GOC:TermGenie + + + + + activation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + positive regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + positive regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + up regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + up regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + up-regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + up-regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + upregulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + upregulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + activation of intracellular signaling pathway + GOC:TermGenie + + + + + activation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + positive regulation of intracellular signaling cascade + GOC:TermGenie + + + + + positive regulation of intracellular signaling pathway + GOC:TermGenie + + + + + positive regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + up regulation of intracellular signaling cascade + GOC:TermGenie + + + + + up regulation of intracellular signaling pathway + GOC:TermGenie + + + + + up regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + up-regulation of intracellular signaling cascade + GOC:TermGenie + + + + + up-regulation of intracellular signaling pathway + GOC:TermGenie + + + + + up-regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + upregulation of intracellular signaling cascade + GOC:TermGenie + + + + + upregulation of intracellular signaling pathway + GOC:TermGenie + + + + + upregulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + @@ -680,7 +7596,9 @@ Association is weaker than correlation or proportionality. These relations may b + A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities + quality (PATO) PATO:0000072 quality PATO:0000001 @@ -1443,6 +8361,7 @@ Association is weaker than correlation or proportionality. These relations may b + A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. quality @@ -4696,6 +11615,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A speed which is relatively high. @@ -4719,6 +11649,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A speed which is relatively low. @@ -5726,6 +12667,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A distance which is greater relative to the normal or average. @@ -5749,6 +12701,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A distance which is lesser relative to the normal or average. @@ -5816,6 +12779,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A frequency which is relatively high. @@ -5840,6 +12814,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A frequency which is relatively low. @@ -5926,6 +12911,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A hardness quality of being rigid and resistant to pressure. @@ -5952,6 +12948,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A hardness quality of giving little resistance to pressure. @@ -7272,6 +14279,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An amount which is relatively high. @@ -7622,6 +14640,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A duration quality of a process which is relatively high. @@ -7650,6 +14679,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A duration quality of a process which is relatively low. @@ -8548,6 +15588,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A height which is relatively low. @@ -8570,6 +15621,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A height which is relatively high. @@ -8614,6 +15676,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A length quality which is relatively large. @@ -8636,6 +15709,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A length quality which is relatively small. @@ -8735,6 +15819,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A weight which is relatively high. @@ -8758,6 +15853,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A weight which is relatively low. @@ -8826,6 +15932,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A size quality which is relatively high. @@ -8853,6 +15970,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A size quality which is relatively low. @@ -8921,6 +16049,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A thickness which is relatively high. @@ -8947,6 +16086,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A thickness which is relatively low. @@ -8994,6 +16144,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A volume which is relatively high. @@ -9018,6 +16179,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A volume which is relatively low. @@ -9064,6 +16236,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A width which is relatively small. @@ -9086,6 +16269,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A width which is relatively large. @@ -10738,6 +17932,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A threshold which is relatively high. @@ -10773,6 +17978,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A threshold which is relatively low. @@ -11408,6 +18624,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity. @@ -11430,6 +18657,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity. @@ -13241,6 +20479,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A rate which is relatively low. @@ -13264,6 +20513,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A rate which is relatively high. @@ -16661,6 +23921,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A concentration which is higher relative to the normal or average. @@ -16684,6 +23955,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A concentration which is lower relative to the normal or average. @@ -17136,6 +24418,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent. @@ -17183,6 +24476,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent. @@ -19111,6 +26415,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + @@ -19136,6 +26451,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A temperature which is relatively high. @@ -19160,6 +26486,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A temperature which is relatively low. @@ -19184,6 +26521,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A variability of temperature which is relatively low. @@ -19206,6 +26554,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A variability of temperature which is relatively high. @@ -19271,6 +26630,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A duration of temperature which is lesser relative to the normal or average enduring or continuing in time. @@ -19292,6 +26662,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time. @@ -22523,6 +29904,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A depth which is relatively low. @@ -22588,6 +29980,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A position which is relatively high. @@ -22610,6 +30013,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A positional which is relatively low. @@ -22748,6 +30162,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + Absence of an organ, tissue or cell due to failure to develop from a primordium or precursor cell. @@ -24054,6 +31476,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A sensitivity toward an external stimulus which is higher than normal/average. @@ -24079,6 +31512,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A sensitivity toward an external stimulus which is lower than normal/average. @@ -24104,6 +31548,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A sensitivity of a process which is higher than normal or average. @@ -24128,6 +31583,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A sensitivity of a process which is lower than normal or average. @@ -24152,6 +31618,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A sensitivity of occurrent to oxygen which is higher than normal or average. @@ -24175,6 +31652,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A sensitivity of a process to oxygen which is lower than normal or average. @@ -24277,6 +31765,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A functionality quality which is held by the bearer when the latter is able to perform additional or different function(s). @@ -24330,6 +31829,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A mass which is lower than normal or average. @@ -24354,6 +31864,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A mass which is higher than normal or average. @@ -24562,6 +32083,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A pressure which is relatively low. @@ -24584,6 +32116,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A pressure which is relatively high. @@ -24606,6 +32149,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A permeability which is relatively high. @@ -24629,6 +32183,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A permeability which is relatively low. @@ -24673,6 +32238,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A contractility which is relatively high. @@ -24696,6 +32272,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A contractility which is relatively low. @@ -24738,6 +32325,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A variability which is relatively low. @@ -24760,6 +32358,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A variability which is relatively high. @@ -24829,6 +32438,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A variability of rate which is relatively high. @@ -24851,6 +32471,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A variability of rate which is relatively low. @@ -24933,6 +32564,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A curvature which is relatively high. @@ -24954,6 +32596,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A curvature which is relatively low. @@ -25014,6 +32667,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A depth quality which is relatively high. @@ -25161,6 +32825,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A life span which is relatively high. @@ -25182,6 +32857,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A life span which is relatively low. @@ -25338,6 +33024,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A variability of color which is relatively high. @@ -25360,6 +33057,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A variability of color which is relatively low. @@ -25453,6 +33161,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A tonicity which is relatively high. @@ -25476,6 +33195,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A tonicity which is relatively low. @@ -25519,6 +33249,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A turgor which is relatively low. @@ -25542,6 +33283,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A turgor which is relatively high. @@ -25587,6 +33339,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s). @@ -25620,6 +33383,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s). @@ -26074,6 +33848,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A resistance to a stimulus which is relatively high. @@ -26099,6 +33884,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A resistance to a stimulus which is relatively low. @@ -26217,6 +34013,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A osmolarity which is relatively low. @@ -26240,6 +34047,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A osmolarity which is relatively high. @@ -26365,6 +34183,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A solubility which is relatively high. @@ -26389,6 +34218,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A solubility which is relatively low. @@ -26491,6 +34331,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A susceptibility toward an external stimulus which is higher than normal/average. @@ -26516,6 +34367,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A susceptibility toward an external stimulus which is lower than normal/average. @@ -26541,6 +34403,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A distribution which is relatively high. @@ -26563,6 +34436,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A distribution which is relatively low. @@ -26627,6 +34511,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An efficiency which is relatively low. @@ -26649,6 +34544,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An efficiency which is relatively high. @@ -26794,6 +34700,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A magnetism which is relatively high. @@ -26817,6 +34734,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A magnetism which is relatively low. @@ -26902,6 +34830,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An elevation which is relatively high. @@ -26925,6 +34864,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An elevation which is relatively low. @@ -27002,6 +34952,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A viscosity which relatively high. @@ -27025,6 +34986,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A viscosity which relatively low. @@ -27048,6 +35020,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A fecundity which is relatively high. @@ -27071,6 +35054,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A fecundity which is relatively low. @@ -27094,6 +35088,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A photosensitivity which is relatively low. @@ -27118,6 +35123,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A photosensitivity which is relatively high. @@ -27404,6 +35420,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A perimeter which is relatively high. @@ -27425,6 +35452,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A perimeter which is relatively low. @@ -27446,6 +35484,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A diameter which is relatively large. @@ -27467,6 +35516,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A diameter which is relatively small. @@ -27621,6 +35681,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A female receptivity which is relatively high. @@ -27644,6 +35715,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A female receptivity which is relatively low. @@ -27667,6 +35749,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A male receptivity which is relatively high. @@ -27690,6 +35783,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A male receptivity which is relatively low. @@ -28018,6 +36122,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A radioactivity which is relatively low. @@ -28040,6 +36155,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A radioactivity which is relatively high. @@ -28442,6 +36568,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An age which is high relative to the normal or average. @@ -28464,6 +36601,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An age which is low relative to the normal or average. @@ -28677,6 +36825,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A flexibility which is relatively high. @@ -28700,6 +36859,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A flexibility which is relatively low. @@ -28723,6 +36893,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A strength which is relatively high. @@ -28745,6 +36926,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A strength which is relatively low. @@ -28807,6 +36999,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An intensity which is relatively high. @@ -28829,6 +37032,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An intensity which is relatively low. @@ -28878,7 +37092,6 @@ Association is weaker than correlation or proportionality. These relations may b A curvature quality inhering in a bearer by virtue of the bearer's being curved outward. - flared quality PATO:0001785 @@ -28943,6 +37156,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A density which is higher relative to the normal or average. @@ -28986,6 +37210,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A density which is lower relative to the normal or average. @@ -29090,6 +37325,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A coiling which is relatively high. @@ -29113,6 +37359,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A coiling which is relatively low. @@ -29208,6 +37465,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A composition quality inhering in an bearer by virtue of the reduction in amount of water the bearer contains. @@ -29331,6 +37599,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A sensitivity to irradiation which is relatively low. @@ -29354,6 +37633,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A sensitivity to irradiation which is relatively high. @@ -29704,6 +37994,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A wetness quality that is relatively high. @@ -29725,6 +38026,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A wetness quality that is relatively low. @@ -29804,6 +38116,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A female fertility which is relatively low. @@ -29827,6 +38150,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A female fertility which is relatively high. @@ -29850,6 +38184,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A male fertility which is relatively high. @@ -29873,6 +38218,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A male fertility which is relatively low. @@ -29896,6 +38252,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A fertility which is relatively low. @@ -29919,6 +38286,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A fertility which is relatively high. @@ -29972,6 +38350,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A flow that is relatively low. @@ -29994,6 +38383,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A fluid flow that is relatively high. @@ -30068,6 +38468,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An acidity which is relatively low. @@ -30090,6 +38501,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An acidity which is relatively high. @@ -30410,6 +38832,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A coordination which is relatively high. @@ -30433,6 +38866,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A coordination which is relatively low. @@ -31138,6 +39582,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An odor quality of having decreased odor. @@ -31159,6 +39614,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An odor quality of having increased odor. @@ -31253,6 +39719,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A circumference which is relatively high. @@ -31274,6 +39751,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A circumference which is relatively low. @@ -31802,6 +40290,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A fluorescence which is higher than normal. @@ -31824,6 +40323,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A fluorescence which is lower than normal. @@ -32422,6 +40932,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A variability of size which is relatively low. @@ -32444,6 +40965,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A variability of size which is relatively high. @@ -33192,6 +41724,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An amount which is relatively low. @@ -33288,6 +41831,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. @@ -33314,6 +41868,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. @@ -33825,6 +42390,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An osmolality which is relatively low. @@ -33850,6 +42426,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An osmolality which is relatively high. @@ -34136,6 +42723,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An anterior-posterior diameter quality which is relatively small. @@ -34158,6 +42756,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An anterior-posterior diameter quality which is relatively large. @@ -34340,6 +42949,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An occurrence which is relatively high. @@ -34363,6 +42983,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An occurrence which is relatively low. @@ -34430,6 +43061,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A fragility which is relatively high. @@ -34454,6 +43096,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A fragility which is relatively low. @@ -34478,6 +43131,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An area which is relatively high. @@ -34501,6 +43165,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An area which is relatively low. @@ -34772,6 +43447,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An affinity which is relatively high. @@ -34797,6 +43483,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An affinity which is relatively low. @@ -34846,6 +43543,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An avidity which is relatively high. @@ -34871,6 +43579,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An avidity which is relatively low. @@ -36377,6 +45096,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A radiopacity that is relatively high. @@ -36401,6 +45131,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A radiopacity that is relatively low. @@ -36448,6 +45189,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A virulence that is relatively low. @@ -36472,6 +45224,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A virulence that is relatively high. @@ -36751,6 +45514,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch of an increased apical height. @@ -38043,6 +46817,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups. @@ -38067,6 +46852,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully. @@ -38570,6 +47366,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A force which relative high. @@ -38594,6 +47401,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A force which is relative low. @@ -38694,6 +47512,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A degree of pigmentation quality that is relatively high. @@ -38719,6 +47548,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A degree of pigmentation quality that is relative low. @@ -39391,6 +48231,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A mobility which is relative high. @@ -39414,6 +48265,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A mobility which is relative low. @@ -39503,6 +48365,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An elasticity which is relatively high. @@ -39526,6 +48399,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An elasticity which is relatively low. @@ -39712,6 +48596,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A cellular motility which is lower relative to the normal or average. @@ -39733,6 +48628,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A cellular motility which is higher relative to the normal or average. @@ -39778,6 +48684,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + @@ -39805,6 +48722,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + @@ -39832,6 +48760,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A quality of a process that has a value that is decreased compared to normal or average. @@ -39854,6 +48793,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A quality of an object that has a value that is decreased compared to normal or average. @@ -39876,6 +48826,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A quality of a process that has a value that is increased compared to normal or average. @@ -39898,6 +48859,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A quality of an object that has a value that is increased compared to normal or average. @@ -40385,6 +49357,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An angle which is relatively high. @@ -40409,6 +49392,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + An angle which is relatively low. @@ -40521,6 +49515,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A adhesivity which is relatively high. @@ -40544,6 +49549,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A adhesivity which is relatively low. @@ -41117,6 +50133,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A tendency which is relatively high. @@ -41142,6 +50169,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A tendency which is relatively low. @@ -41364,7 +50402,7 @@ Association is weaker than correlation or proportionality. These relations may b quality PATO:0002372 - grand multi[arous + grand multiparous @@ -41571,6 +50609,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A waxiness which is relatively high. @@ -41594,6 +50643,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A waxiness which is relatively low. @@ -41805,6 +50865,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus. @@ -41829,6 +50900,17 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus. @@ -43474,6 +52556,17 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position. @@ -43497,6 +52590,17 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + + + + + + A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position. @@ -45676,6 +54780,17 @@ height'). + + + + + + + + + + + A propagation velocity that is higher than normal. @@ -45697,6 +54812,17 @@ height'). + + + + + + + + + + + A propagation velocity that is lower than normal. @@ -45739,6 +54865,14 @@ height'). + + + + + + + + Absence due to a degenerative process. @@ -45781,6 +54915,17 @@ height'). + + + + + + + + + + + A decrease in the ability of a process to produce its output. @@ -45803,6 +54948,17 @@ height'). + + + + + + + + + + + A increase in the ability of a process to produce its output. @@ -45937,6 +55093,17 @@ height'). + + + + + + + + + + + An increase in humidity. @@ -45959,6 +55126,17 @@ height'). + + + + + + + + + + + An decrease in humidity. @@ -46018,6 +55196,17 @@ height'). + + + + + + + + + + + An increase in illumination. @@ -46040,6 +55229,17 @@ height'). + + + + + + + + + + + An decrease in illumination. @@ -46182,6 +55382,17 @@ height'). + + + + + + + + + + + An increase in combustibility. @@ -46198,6 +55409,17 @@ height'). + + + + + + + + + + + An decrease in combustibility. @@ -46214,6 +55436,17 @@ height'). + + + + + + + + + + + An increase in porosity. @@ -46234,6 +55467,17 @@ height'). + + + + + + + + + + + An decrease in porosity. @@ -46275,6 +55519,17 @@ height'). + + + + + + + + + + + An increase in stability. @@ -46296,6 +55551,17 @@ height'). + + + + + + + + + + + A decrease in stability. @@ -47042,12 +56308,87 @@ height'). + + + + + The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.. + + quality + PATO:0040021 + unpaired + + + + + The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.. + https://orcid.org/0000-0003-3162-7490 + + + + + + + + + A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape. + + 2018-11-19T21:49:07Z + quality + PATO:0040022 + flared + + + + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body. + + 2018-11-19T21:54:33Z + disto-medial orientation + distomedial + quality + PATO:0040023 + distomedial orientation + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body. + https://en.wiktionary.org/wiki/distomedial + + + + + + + + + The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism. + + paired + quality + PATO:0040024 + bilaterally paired + + + + + The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism. + https://orcid.org/0000-0003-3162-7490 + + + + A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present. - http://orcid.org/0000-0001-5208-3432 + quality PATO:0040025 lesioned @@ -47061,9 +56402,35 @@ height'). + + + + + A structural quality inhering in a bearer by virtue of the bearer's being marked by interruptions or gaps. + http://orcid.org/0000-0001-5208-3432 + structurally interrupted + quality + PATO:0040026 + This term is intended for use for terms such as MP:0010461 discontinuous pulmonary artery and MP:0004157 interrupted aortic arch. + structurally discontinuous + + + + + + + + + + + + + + + A rate which is relatively normal. @@ -47079,6 +56446,17 @@ height'). + + + + + + + + + + + @@ -47099,6 +56477,17 @@ height'). + + + + + + + + + + + An acidity which is relatively normal. @@ -47113,6 +56502,17 @@ height'). + + + + + + + + + + + A adhesivity which is relatively normal or average. @@ -47129,6 +56529,17 @@ height'). + + + + + + + + + + + An affinity which is relatively normal or average. @@ -47145,6 +56556,17 @@ height'). + + + + + + + + + + + An age which is relatively normal or average. @@ -47161,6 +56583,17 @@ height'). + + + + + + + + + + + An avidity which is relatively normal or average. @@ -47178,6 +56611,17 @@ height'). + + + + + + + + + + + A behavioural quality of a process inhering in a bearer by virtue of the bearer's exhibiting normal or average activity. @@ -47194,6 +56638,17 @@ height'). + + + + + + + + + + + A cellular motility which is normal or average. @@ -47210,6 +56665,17 @@ height'). + + + + + + + + + + + A coiling which is normal or average. @@ -47227,6 +56693,17 @@ height'). + + + + + + + + + + + A concentration which is relatively normal or average. @@ -47244,6 +56721,17 @@ height'). + + + + + + + + + + + A contractility which is relatively normal or average. @@ -47261,6 +56749,17 @@ height'). + + + + + + + + + + + A coordination which is relatively normal or average. @@ -47278,6 +56777,17 @@ height'). + + + + + + + + + + + A curvature which is relatively normal or average. @@ -47294,6 +56804,17 @@ height'). + + + + + + + + + + + A distance which is relatively normal or average. @@ -47311,6 +56832,17 @@ height'). + + + + + + + + + + + An efficiency which is relatively normal or average. @@ -47327,6 +56859,17 @@ height'). + + + + + + + + + + + An elasticity which is relatively normal or average. @@ -47343,6 +56886,17 @@ height'). + + + + + + + + + + + A fecundity which is relatively normal or average. @@ -47360,6 +56914,17 @@ height'). + + + + + + + + + + + A female fertility which is relatively normal or average. @@ -47377,6 +56942,17 @@ height'). + + + + + + + + + + + A female receptivity which is relatively normal or average. @@ -47394,6 +56970,17 @@ height'). + + + + + + + + + + + A fertility which is relatively normal or average. @@ -47411,6 +56998,17 @@ height'). + + + + + + + + + + + A flexibility which is relatively normal or average. @@ -47428,6 +57026,17 @@ height'). + + + + + + + + + + + A fluid flow which is relatively normal or average. @@ -47444,6 +57053,17 @@ height'). + + + + + + + + + + + A fluorescence which is relatively normal or average. @@ -47460,6 +57080,17 @@ height'). + + + + + + + + + + + A force which is relatively normal or average. @@ -47476,6 +57107,17 @@ height'). + + + + + + + + + + + A fragility which is relatively normal or average. @@ -47493,6 +57135,17 @@ height'). + + + + + + + + + + + A life span which is relatively normal or average. @@ -47508,6 +57161,17 @@ height'). + + + + + + + + + + + A magnetism which is relatively normal or average. @@ -47525,6 +57189,17 @@ height'). + + + + + + + + + + + A male fertility which is relatively normal or average. @@ -47542,6 +57217,17 @@ height'). + + + + + + + + + + + A male receptivity which is relatively normal or average. @@ -47559,6 +57245,17 @@ height'). + + + + + + + + + + + A mass which is relatively normal or average. @@ -47575,6 +57272,17 @@ height'). + + + + + + + + + + + A density which is relatively normal or average. @@ -47591,6 +57299,17 @@ height'). + + + + + + + + + + + A mobility which is relatively normal or average. @@ -47607,6 +57326,17 @@ height'). + + + + + + + + + + + An odor quality of having relatively normal or average odor. @@ -47623,6 +57353,17 @@ height'). + + + + + + + + + + + An osmolality which is relatively normal or average odor. @@ -47640,6 +57381,17 @@ height'). + + + + + + + + + + + An osmolarity which is relatively normal or average odor. @@ -47657,6 +57409,17 @@ height'). + + + + + + + + + + + A permeability which is relatively normal or average. @@ -47674,6 +57437,17 @@ height'). + + + + + + + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a normal or average extent. @@ -47690,6 +57464,17 @@ height'). + + + + + + + + + + + A photosensitivity which is relatively normal or average @@ -47708,6 +57493,17 @@ height'). + + + + + + + + + + + A degree of pigmentation quality which is relatively normal or average @@ -47725,6 +57521,17 @@ height'). + + + + + + + + + + + A position which is relatively normal or average @@ -47741,6 +57548,17 @@ height'). + + + + + + + + + + + An angle which is relatively normal or average @@ -47758,6 +57576,17 @@ height'). + + + + + + + + + + + A distribution which is relatively normal or average @@ -47774,6 +57603,17 @@ height'). + + + + + + + + + + + An elevation which is relatively normal or average @@ -47790,6 +57630,17 @@ height'). + + + + + + + + + + + A pressure which is relatively normal or average @@ -47806,6 +57657,17 @@ height'). + + + + + + + + + + + A radioactivity which is relatively normal or average @@ -47822,6 +57684,17 @@ height'). + + + + + + + + + + + A radiopacity which is relatively normal or average @@ -47839,6 +57712,17 @@ height'). + + + + + + + + + + + A resistance to a stimulus which is relatively normal or average @@ -47857,6 +57741,17 @@ height'). + + + + + + + + + + + A sensitivity to irradiation which is relatively normal or average @@ -47874,6 +57769,17 @@ height'). + + + + + + + + + + + A sensitivity toward an external stimulus which is relatively normal or average @@ -47892,6 +57798,17 @@ height'). + + + + + + + + + + + A size quality which is relatively normal or average @@ -47908,6 +57825,17 @@ height'). + + + + + + + + + + + An area which is relatively normal or average @@ -47924,6 +57852,17 @@ height'). + + + + + + + + + + + A depth quality which is relatively normal or average @@ -47940,6 +57879,17 @@ height'). + + + + + + + + + + + A height which is relatively normal or average @@ -47956,6 +57906,17 @@ height'). + + + + + + + + + + + A length quality which is relatively normal or average @@ -47972,6 +57933,17 @@ height'). + + + + + + + + + + + A diameter which is relatively normal or average @@ -47988,6 +57960,17 @@ height'). + + + + + + + + + + + An anterior-posterior diameter which is relatively normal or average @@ -48004,6 +57987,17 @@ height'). + + + + + + + + + + + A perimeter which is relatively normal or average @@ -48020,6 +58014,17 @@ height'). + + + + + + + + + + + A circumference which is relatively normal or average @@ -48036,6 +58041,17 @@ height'). + + + + + + + + + + + A thickness which is relatively normal or average @@ -48052,6 +58068,17 @@ height'). + + + + + + + + + + + A volume which is relatively normal or average @@ -48069,6 +58096,17 @@ height'). + + + + + + + + + + + A width which is relatively normal or average @@ -48085,6 +58123,17 @@ height'). + + + + + + + + + + + A solubility which is relatively normal or average @@ -48103,6 +58152,17 @@ height'). + + + + + + + + + + + A speed which is relatively normal or average @@ -48119,6 +58179,17 @@ height'). + + + + + + + + + + + A strength which is relatively normal or average @@ -48135,6 +58206,17 @@ height'). + + + + + + + + + + + A fatigability which is relatively normal or average @@ -48152,6 +58234,17 @@ height'). + + + + + + + + + + + A susceptibility toward an external stimulus which is relatively normal or average @@ -48170,6 +58263,17 @@ height'). + + + + + + + + + + + A temperature which is relatively normal or average @@ -48186,6 +58290,17 @@ height'). + + + + + + + + + + + A tendency which is relatively normal or average @@ -48202,6 +58317,17 @@ height'). + + + + + + + + + + + A threshold which is relatively normal or average @@ -48220,6 +58346,17 @@ height'). + + + + + + + + + + + A tolerance to an external stimulus which is relatively normal or average @@ -48237,6 +58374,17 @@ height'). + + + + + + + + + + + A tonicity which is relatively normal or average @@ -48254,6 +58402,17 @@ height'). + + + + + + + + + + + A turgor which is relatively normal or average @@ -48271,6 +58430,17 @@ height'). + + + + + + + + + + + @@ -48291,6 +58461,17 @@ height'). + + + + + + + + + + + @@ -48312,6 +58493,17 @@ height'). + + + + + + + + + + + @@ -48333,6 +58525,17 @@ height'). + + + + + + + + + + + @@ -48354,6 +58557,17 @@ height'). + + + + + + + + + + + @@ -48375,6 +58589,17 @@ height'). + + + + + + + + + + + @@ -48396,6 +58621,17 @@ height'). + + + + + + + + + + + A velocity which is relatively normal or average @@ -48412,6 +58648,17 @@ height'). + + + + + + + + + + + A virulence which is relatively normal or average @@ -48428,6 +58675,17 @@ height'). + + + + + + + + + + + A viscosity which is relatively normal or average @@ -48444,6 +58702,17 @@ height'). + + + + + + + + + + + A waxiness which is relatively normal or average @@ -48460,6 +58729,17 @@ height'). + + + + + + + + + + + A wetness which is relatively normal or average @@ -48476,6 +58756,17 @@ height'). + + + + + + + + + + + A duration quality of a process which is relatively normal. @@ -48490,6 +58781,17 @@ height'). + + + + + + + + + + + A duration quality of temperature quality of a process which is relatively normal. @@ -48504,6 +58806,17 @@ height'). + + + + + + + + + + + An occurrence which is relatively normal. @@ -48518,6 +58831,17 @@ height'). + + + + + + + + + + + A frequency which is relatively normal. @@ -48533,6 +58857,17 @@ height'). + + + + + + + + + + + A sensitivity of a process which is relatively normal. @@ -48548,6 +58883,17 @@ height'). + + + + + + + + + + + A sensitivity of occurrent to oxygen which is relatively normal. @@ -48708,6 +59054,17 @@ height'). + + + + + + + + + + + A spatial distribution of a process in which the process occupies a smaller length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type. @@ -48729,6 +59086,17 @@ height'). + + + + + + + + + + + A spatial distribution of a process in which the process occupies a greater length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type. @@ -48804,6 +59172,1429 @@ height'). A quality inhering in a bearer by virtue of the bearer's being present in females and absent from males in members of the same species. http://orcid.org/0000-0002-1373-1705 + + + + + + + + + + + + + + + + + + + + + + + + + pending final vetting + + + + + + + + + +## Elucidation + +This is used when the statement/axiom is assumed to hold true 'eternally' + +## How to interpret (informal) + +First the "atemporal" FOL is derived from the OWL using the standard +interpretation. This axiom is temporalized by embedding the axiom +within a for-all-times quantified sentence. The t argument is added to +all instantiation predicates and predicates that use this relation. + +## Example + + Class: nucleus + SubClassOf: part_of some cell + + forall t : + forall n : + instance_of(n,Nucleus,t) + implies + exists c : + instance_of(c,Cell,t) + part_of(n,c,t) + +## Notes + +This interpretation is *not* the same as an at-all-times relation + + + axiom holds for all times + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2 + + + + + + + + + + + 1 + + + + + + + + + + + 2 + + + + + + + + + + + 2 + + + + + + + + + + + + + + + + + + + + + 2 + + + + + + + + + + + 1 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z + infer input from direct reg + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z), +e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity' + enabling an MF enables its parts + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction' + involved in BP + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + From ligand activity to has_ligand + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to "... -> overlaps" + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this. + inferring direct reg edge from input to regulatory subfunction + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + inferring direct neg reg edge from input to regulatory subfunction + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + inferring direct positive reg edge from input to regulatory subfunction + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + From has_ligand to ligand activity + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + effector input is compound function input + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Input of effector is input of its parent MF + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + if effector directly regulates X, its parent MF directly regulates X + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + if effector directly positively regulates X, its parent MF directly positively regulates X + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + if effector directly negatively regulates X, its parent MF directly negatively regulates X + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties). + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties). + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/src/metadata/README.md b/src/metadata/README.md new file mode 100644 index 00000000..2e346438 --- /dev/null +++ b/src/metadata/README.md @@ -0,0 +1,23 @@ +Metadata files for the OBO Library + + * [pato.yml](pato.yml) + * Determines how your purl.obolibrary.org/obo/pato/ redirects will be handled + * Go here: https://github.com/OBOFoundry/purl.obolibrary.org/tree/master/config + * Click [New File](https://github.com/OBOFoundry/purl.obolibrary.org/new/master/config) + * Paste in the contents of [pato.yml](pato.yml) + * Click "Commit new file" + * IMPORTANT: remember to make a pull request + * An OBO admin will merge your Pull Request *providing it meets the requirements of the OBO library* + * [pato.md](pato.md) + * Determines how your metadata is shown on OBO Library, OLS and AberOWL + * Go here: https://github.com/OBOFoundry/OBOFoundry.github.io/tree/master/ontology + * Click [New File](https://github.com/OBOFoundry/OBOFoundry.github.io/new/master/ontology) + * Paste in the contents of [pato.md](pato.md) + * Click "Commit new file" + * IMPORTANT: remember to make a pull request + * An OBO admin will merge your Pull Request *providing it meets the requirements of the OBO library* + +For more background see: + + * http://obofoundry.org/ + * http://obofoundry.org/faq/how-do-i-edit-metadata.html \ No newline at end of file diff --git a/src/metadata/pato.md b/src/metadata/pato.md new file mode 100644 index 00000000..5525b1aa --- /dev/null +++ b/src/metadata/pato.md @@ -0,0 +1,48 @@ +--- +layout: ontology_detail +id: pato +title: Phenotype And Trait Ontology +jobs: + - id: https://travis-ci.org/pato-ontology/pato + type: travis-ci +build: + checkout: git clone https://github.com/pato-ontology/pato.git + system: git + path: "." +contact: + email: + label: + github: +description: Phenotype And Trait Ontology is an ontology... +domain: stuff +homepage: https://github.com/pato-ontology/pato +products: + - id: pato.owl + name: "Phenotype And Trait Ontology main release in OWL format" + - id: pato.obo + name: "Phenotype And Trait Ontology additional release in OBO format" + - id: pato.json + name: "Phenotype And Trait Ontology additional release in OBOJSon format" + - id: pato/pato-base.owl + name: "Phenotype And Trait Ontology main release in OWL format" + - id: pato/pato-base.obo + name: "Phenotype And Trait Ontology additional release in OBO format" + - id: pato/pato-base.json + name: "Phenotype And Trait Ontology additional release in OBOJSon format" +dependencies: +- id: ro +- id: chebi +- id: go +- id: pco +- id: uberon + +tracker: https://github.com/pato-ontology/pato/issues +license: + url: http://creativecommons.org/licenses/by/3.0/ + label: CC-BY +activity_status: active +--- + +Enter a detailed description of your ontology here. You can use arbitrary markdown and HTML. +You can also embed images too. + diff --git a/src/metadata/pato.yml b/src/metadata/pato.yml new file mode 100644 index 00000000..e2e47ed6 --- /dev/null +++ b/src/metadata/pato.yml @@ -0,0 +1,27 @@ +# PURL configuration for http://purl.obolibrary.org/obo/pato + +idspace: PATO +base_url: /obo/pato + +products: +- pato.owl: https://raw.githubusercontent.com/pato-ontology/pato/master/pato.owl +- pato.obo: https://raw.githubusercontent.com/pato-ontology/pato/master/pato.obo + +term_browser: ontobee +example_terms: +- pato_0000000 + +entries: + +- prefix: /releases/ + replacement: https://raw.githubusercontent.com/pato-ontology/pato/v + +- prefix: /tracker/ + replacement: https://github.com/pato-ontology/pato/issues + +- prefix: /about/ + replacement: http://www.ontobee.org/ontology/PATO?iri=http://purl.obolibrary.org/obo/ + +## generic fall-through, serve direct from github by default +- prefix: / + replacement: https://raw.githubusercontent.com/pato-ontology/pato/master/ diff --git a/src/ontology/Dockerfile b/src/ontology/Dockerfile new file mode 100644 index 00000000..661e66df --- /dev/null +++ b/src/ontology/Dockerfile @@ -0,0 +1,3 @@ +FROM cmungall/osk + +CMD make test diff --git a/src/ontology/Makefile b/src/ontology/Makefile index c854fa0b..34051d9f 100644 --- a/src/ontology/Makefile +++ b/src/ontology/Makefile @@ -168,13 +168,13 @@ $(ONT)-full.json: $(ONT)-full.owl $(ROBOT) annotate --input $< --ontology-iri $(ONTBASE)/$@ --version-iri $(ONTBASE)/releases/$(TODAY)/$@ \ convert --check false -f json -o $@.tmp.json && mv $@.tmp.json $@ # Main release artefacts -$(ONT).owl: $(ONT)-simple.owl +$(ONT).owl: $(ONT)-full.owl $(ROBOT) annotate --input $< --ontology-iri $(URIBASE)/$@ --version-iri $(ONTBASE)/releases/$(TODAY)/$@ \ convert -o $@.tmp.owl && mv $@.tmp.owl $@ $(ONT).obo: $(ONT).owl $(ROBOT) convert --input $< --check false -f obo $(OBO_FORMAT_OPTIONS) -o $@.tmp.obo && grep -v ^owl-axioms $@.tmp.obo > $@ && rm $@.tmp.obo -$(ONT).json: $(ONT)-simple.owl +$(ONT).json: $(ONT)-full.owl $(ROBOT) annotate --input $< --ontology-iri $(URIBASE)/$@ --version-iri $(ONTBASE)/releases/$(TODAY) \ convert --check false -f json -o $@.tmp.json && mv $@.tmp.json $@ # ---------------------------------------- @@ -398,4 +398,7 @@ build-docker: +update_repo: + sh ../scripts/update_repo.sh + include pato.Makefile \ No newline at end of file diff --git a/src/ontology/imports/chebi_import.json b/src/ontology/imports/chebi_import.json index 6fdb3b06..c3566c36 100644 --- a/src/ontology/imports/chebi_import.json +++ b/src/ontology/imports/chebi_import.json @@ -2,34 +2,155 @@ "graphs" : [ { "nodes" : [ { "id" : "http://purl.obolibrary.org/obo/CHEBI_46662", + "meta" : { + "definition" : { + "val" : "In general, a mineral is a chemical substance that is normally crystalline formed and has been formed as a result of geological processes. The term also includes metamict substances (naturally occurring, formerly crystalline substances whose crystallinity has been destroyed by ionising radiation) and can include naturally occurring amorphous substances that have never been crystalline ('mineraloids') such as georgite and calciouranoite as well as substances formed by the action of geological processes on bigenic compounds ('biogenic minerals').", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/chebi#3_STAR" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "minerales", + "xrefs" : [ "ChEBI" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "minerals", + "xrefs" : [ "ChEBI" ] + }, { + "pred" : "hasExactSynonym", + "val" : "mineral", + "xrefs" : [ "ChEBI" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Minerale", + "xrefs" : [ "ChEBI" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "mineraux", + "xrefs" : [ "ChEBI" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "chebi_ontology" + } ] + }, "type" : "CLASS", "lbl" : "mineral" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_24431", + "meta" : { + "definition" : { + "val" : "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/chebi#3_STAR" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "chemical entity", + "xrefs" : [ "UniProt" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "chebi_ontology" + } ] + }, "type" : "CLASS", "lbl" : "chemical entity" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym", + "type" : "PROPERTY", + "lbl" : "has_exact_synonym" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref", + "type" : "PROPERTY", + "lbl" : "database_cross_reference" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "type" : "PROPERTY", + "lbl" : "shorthand" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", + "type" : "PROPERTY", + "lbl" : "in_subset" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "type" : "PROPERTY", + "lbl" : "has_obo_namespace" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", + "type" : "PROPERTY", + "lbl" : "has_obo_format_version" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", + "type" : "PROPERTY", + "lbl" : "has_related_synonym" }, { "id" : "http://purl.obolibrary.org/obo/CHEBI_59999", + "meta" : { + "definition" : { + "val" : "A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/chebi#3_STAR" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "Chemische Substanz", + "xrefs" : [ "ChEBI" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "chebi_ontology" + } ] + }, "type" : "CLASS", "lbl" : "chemical substance" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000115", + "type" : "PROPERTY", + "lbl" : "definition" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000051", + "meta" : { + "xrefs" : [ { + "val" : "BFO:0000051" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "chebi_ontology" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_cyclic", + "val" : "false" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_part" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has part" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#SubsetProperty", + "type" : "PROPERTY", + "lbl" : "subset_property" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "type" : "PROPERTY", + "lbl" : "has_alternative_id" } ], "edges" : [ { - "sub" : "http://purl.obolibrary.org/obo/CHEBI_59999", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/CHEBI_24431" - }, { "sub" : "http://purl.obolibrary.org/obo/CHEBI_46662", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/CHEBI_59999" + }, { + "sub" : "http://purl.obolibrary.org/obo/CHEBI_59999", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CHEBI_24431" } ], - "id" : "file:/imports/chebi_import.owl", + "id" : "http://purl.obolibrary.org/obo/pato/imports/chebi_import.owl", "meta" : { "subsets" : [ ], "xrefs" : [ ], - "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/source", - "val" : "http://purl.obolibrary.org/obo/chebi/131/chebi.owl" - } ] + "basicPropertyValues" : [ ], + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29/imports/chebi_import.owl" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ ], diff --git a/src/ontology/imports/chebi_import.obo b/src/ontology/imports/chebi_import.obo index bc91c66b..f26deab1 100644 --- a/src/ontology/imports/chebi_import.obo +++ b/src/ontology/imports/chebi_import.obo @@ -1,18 +1,43 @@ format-version: 1.2 -ontology: file:/imports/chebi_import.owl -property_value: http://purl.org/dc/elements/1.1/source http://purl.obolibrary.org/obo/chebi/131/chebi.owl +data-version: pato/releases/2019-10-29/imports/chebi_import.owl +subsetdef: 3_STAR "" +ontology: pato/imports/chebi_import [Term] id: CHEBI:24431 name: chemical entity +namespace: chebi_ontology +def: "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances." [] +subset: 3_STAR +synonym: "chemical entity" EXACT [UniProt] [Term] id: CHEBI:46662 name: mineral +namespace: chebi_ontology +def: "In general, a mineral is a chemical substance that is normally crystalline formed and has been formed as a result of geological processes. The term also includes metamict substances (naturally occurring, formerly crystalline substances whose crystallinity has been destroyed by ionising radiation) and can include naturally occurring amorphous substances that have never been crystalline ('mineraloids') such as georgite and calciouranoite as well as substances formed by the action of geological processes on bigenic compounds ('biogenic minerals')." [] +subset: 3_STAR +synonym: "mineral" EXACT [ChEBI] +synonym: "Minerale" RELATED [ChEBI] +synonym: "minerales" RELATED [ChEBI] +synonym: "minerals" RELATED [ChEBI] +synonym: "mineraux" RELATED [ChEBI] is_a: CHEBI:59999 ! chemical substance [Term] id: CHEBI:59999 name: chemical substance +namespace: chebi_ontology +def: "A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types." [] +subset: 3_STAR +synonym: "Chemische Substanz" RELATED [ChEBI] is_a: CHEBI:24431 ! chemical entity +[Typedef] +id: has_part +name: has part +namespace: chebi_ontology +xref: BFO:0000051 +is_cyclic: false +is_transitive: true + diff --git a/src/ontology/imports/chebi_import.owl b/src/ontology/imports/chebi_import.owl index 13c938ed..b7723af3 100644 --- a/src/ontology/imports/chebi_import.owl +++ b/src/ontology/imports/chebi_import.owl @@ -1,17 +1,204 @@ - - - + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" + xmlns:chebi="http://purl.obolibrary.org/obo/chebi#3" + xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> + + + + + + + + + + + definition + + + + + + + + + + + + + + + + + + + + + + + + + + + + subset_property + + + + + + + + + + + + + + + + + + + + has_alternative_id + + + + + + + + database_cross_reference + + + + + + + + has_exact_synonym + + + + + + + + has_obo_format_version + + + + + + + + has_obo_namespace + + + + + + + + has_related_synonym + + + + + + + + + + + + + + in_subset + + + + + + + + + + + + + + + + + + + + shorthand + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + BFO:0000051 + chebi_ontology + has_part + false + has_part + has part + + + + - chemical entity + A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances. + chemical entity + chebi_ontology + CHEBI:24431 + + chemical entity + + + + chemical entity + UniProt + - mineral + In general, a mineral is a chemical substance that is normally crystalline formed and has been formed as a result of geological processes. The term also includes metamict substances (naturally occurring, formerly crystalline substances whose crystallinity has been destroyed by ionising radiation) and can include naturally occurring amorphous substances that have never been crystalline ('mineraloids') such as georgite and calciouranoite as well as substances formed by the action of geological processes on bigenic compounds ('biogenic minerals'). + mineral + chebi_ontology + Minerale + minerales + minerals + mineraux + CHEBI:46662 + + mineral + + + + mineral + ChEBI + + + + + Minerale + ChEBI + + + + + minerales + ChEBI + + + + + minerals + ChEBI + + + + + mineraux + ChEBI + - chemical substance + A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types. + chebi_ontology + Chemische Substanz + CHEBI:59999 + + chemical substance + + + + Chemische Substanz + ChEBI + - + diff --git a/src/ontology/imports/chebi_terms.txt b/src/ontology/imports/chebi_terms.txt new file mode 100644 index 00000000..a62ed837 --- /dev/null +++ b/src/ontology/imports/chebi_terms.txt @@ -0,0 +1,2 @@ +CHEBI:24431 + diff --git a/src/ontology/imports/go_import.json b/src/ontology/imports/go_import.json index 83b1344d..804afece 100644 --- a/src/ontology/imports/go_import.json +++ b/src/ontology/imports/go_import.json @@ -1,120 +1,4979 @@ { "graphs" : [ { "nodes" : [ { - "id" : "http://purl.obolibrary.org/obo/GO_0120025", + "id" : "http://purl.obolibrary.org/obo/GO_0048585", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.", + "xrefs" : [ "GOC:jid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "down regulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of response to stimulus", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + } ] + }, "type" : "CLASS", - "lbl" : "plasma membrane bounded cell projection" + "lbl" : "negative regulation of response to stimulus" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0043227", + "id" : "http://purl.obolibrary.org/obo/GO_0048584", + "meta" : { + "definition" : { + "val" : "Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.", + "xrefs" : [ "GOC:jid" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "upregulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of response to stimulus", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of response to stimulus", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. 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Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of response to stimulus" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0050789", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.", + "xrefs" : [ "GOC:ai", "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_candida" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of physiological process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0050791" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of biological process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0003674", + "meta" : { + "definition" : { + "val" : "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. 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Direct annotations to this term may be amended during annotation QC." + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete intracellular part" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0005575", + "meta" : { + "definition" : { + "val" : "A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. 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When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code \"no data\" (ND), is used to indicate this." + } ] + }, + "type" : "CLASS", + "lbl" : "cellular_component" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0010647", + "meta" : { + "definition" : { + "val" : "Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. 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"fillerId" : "http://purl.obolibrary.org/obo/GO_0098590" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0031325", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0044237" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0019222", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0008152" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051338", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0016740" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009966", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051099", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0005488" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010646", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0007154" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0065009", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0003674" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0031323", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0044237" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" + } ] + } ], "domainRangeAxioms" : [ ], - "propertyChainAxioms" : [ ] + "propertyChainAxioms" : [ { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000066", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002213", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002212", "http://purl.obolibrary.org/obo/RO_0002212" ] + } ] } ] } \ No newline at end of file diff --git a/src/ontology/imports/go_import.obo b/src/ontology/imports/go_import.obo index 6a30a64d..1c196452 100644 --- a/src/ontology/imports/go_import.obo +++ b/src/ontology/imports/go_import.obo @@ -1,65 +1,1719 @@ format-version: 1.2 +data-version: pato/releases/2019-10-29/imports/go_import.owl +subsetdef: gocheck_do_not_annotate "" +subsetdef: gocheck_do_not_manually_annotate "" +subsetdef: goslim_agr "" +subsetdef: goslim_aspergillus "" +subsetdef: goslim_candida "" +subsetdef: goslim_chembl "" +subsetdef: goslim_flybase_ribbon "" +subsetdef: goslim_generic "" +subsetdef: goslim_metagenomics "" +subsetdef: goslim_mouse "" +subsetdef: goslim_pir "" +subsetdef: goslim_plant "" +subsetdef: goslim_pombe "" +subsetdef: goslim_yeast "" ontology: pato/imports/go_import +[Term] +id: GO:0003674 +name: molecular_function +namespace: molecular_function +alt_id: GO:0005554 +def: "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process." [GOC:pdt] +comment: Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex. +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +subset: goslim_yeast +synonym: "molecular function" EXACT [] + +[Term] +id: GO:0003824 +name: catalytic activity +namespace: molecular_function +def: "Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic." [GOC:vw, ISBN:0198506732] +subset: goslim_agr +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +synonym: "enzyme activity" EXACT [GOC:dph, GOC:tb] +xref: Wikipedia:Enzyme +is_a: GO:0003674 ! molecular_function + +[Term] +id: GO:0005102 +name: signaling receptor binding +namespace: molecular_function +def: "Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function." [GOC:bf, GOC:ceb, ISBN:0198506732] +comment: Where appropriate, also consider annotating to 'receptor agonist activity ; GO:0048018'. +subset: goslim_agr +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_mouse +subset: goslim_plant +synonym: "receptor binding" BROAD [] +synonym: "receptor ligand" NARROW [] +synonym: "receptor-associated protein activity" RELATED [] +xref: Wikipedia:Ligand_(biochemistry) +is_a: GO:0005515 ! protein binding + +[Term] +id: GO:0005488 +name: binding +namespace: molecular_function +def: "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule." [GOC:ceb, GOC:mah, ISBN:0198506732] +comment: Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children. +subset: gocheck_do_not_annotate +subset: goslim_pir +subset: goslim_plant +synonym: "ligand" NARROW [] +xref: Wikipedia:Binding_(molecular) +is_a: GO:0003674 ! molecular_function + +[Term] +id: GO:0005515 +name: protein binding +namespace: molecular_function +alt_id: GO:0001948 +alt_id: GO:0045308 +def: "Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules)." [GOC:go_curators] +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +synonym: "glycoprotein binding" NARROW [] +synonym: "protein amino acid binding" EXACT [] +xref: MIPS_funcat:16.01 +xref: MIPS_funcat:18.01.07 +xref: Reactome:R-HSA-170835 "An anchoring protein, ZFYVE9 (SARA), recruits SMAD2/3" +xref: Reactome:R-HSA-170846 "TGFBR2 recruits TGFBR1" +is_a: GO:0005488 ! binding + [Term] id: GO:0005575 name: cellular_component +namespace: cellular_component +alt_id: GO:0008372 +def: "A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome)." [GOC:pdt, NIF_Subcellular:sao1337158144] +comment: Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +subset: goslim_yeast +synonym: "cell or subcellular entity" EXACT [] +synonym: "cellular component" EXACT [] +synonym: "subcellular entity" RELATED [NIF_Subcellular:nlx_subcell_100315] +xref: NIF_Subcellular:sao1337158144 + +[Term] +id: GO:0005622 +name: intracellular +namespace: cellular_component +def: "The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." [ISBN:0198506732] +subset: gocheck_do_not_annotate +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_plant +synonym: "internal to cell" EXACT [] +synonym: "nucleocytoplasm" RELATED [GOC:mah] +synonym: "protoplasm" EXACT [] +synonym: "protoplast" RELATED [GOC:mah] +xref: Wikipedia:Intracellular +is_a: GO:0005575 ! cellular_component [Term] id: GO:0005623 name: cell +namespace: cellular_component +def: "The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope." [GOC:go_curators] +subset: goslim_chembl +subset: goslim_generic +subset: goslim_plant +xref: NIF_Subcellular:sao1813327414 +xref: Wikipedia:Cell_(biology) is_a: GO:0005575 ! cellular_component +property_value: IAO:0000589 "cell and encapsulating structures" xsd:string [Term] id: GO:0005634 name: nucleus +namespace: cellular_component +def: "A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent." [GOC:go_curators] +subset: goslim_agr +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_mouse +subset: goslim_pir +subset: goslim_plant +subset: goslim_yeast +synonym: "cell nucleus" EXACT [] +synonym: "horsetail nucleus" NARROW [GOC:al, GOC:mah, GOC:vw, PMID:15030757] +xref: MIPS_funcat:70.10 +xref: NIF_Subcellular:sao1702920020 +xref: Wikipedia:Cell_nucleus is_a: GO:0043231 ! intracellular membrane-bounded organelle +[Term] +id: GO:0005886 +name: plasma membrane +namespace: cellular_component +alt_id: GO:0005904 +def: "The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins." [ISBN:0716731363] +subset: goslim_agr +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_mouse +subset: goslim_plant +subset: goslim_yeast +synonym: "bacterial inner membrane" NARROW [] +synonym: "cell membrane" EXACT [] +synonym: "cellular membrane" EXACT [NIF_Subcellular:sao6433132645] +synonym: "cytoplasmic membrane" EXACT [] +synonym: "inner endospore membrane" NARROW [] +synonym: "juxtamembrane" BROAD [] +synonym: "plasma membrane lipid bilayer" NARROW [GOC:mah] +synonym: "plasmalemma" EXACT [] +xref: NIF_Subcellular:sao1663586795 +xref: Wikipedia:Cell_membrane +is_a: GO:0016020 ! membrane +relationship: part_of GO:0071944 ! cell periphery + [Term] id: GO:0005929 name: cilium +namespace: cellular_component +alt_id: GO:0072372 +def: "A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body." [GOC:cilia, GOC:curators, GOC:kmv, GOC:vw, ISBN:0198547684, PMID:16824949, PMID:17009929, PMID:20144998] +comment: Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms. +subset: goslim_chembl +subset: goslim_generic +subset: goslim_pir +synonym: "eukaryotic flagellum" EXACT [] +synonym: "flagellum" RELATED [] +synonym: "microtubule-based flagellum" EXACT [] +synonym: "primary cilium" NARROW [] +xref: FMA:67181 +xref: NIF_Subcellular:sao787716553 +xref: Wikipedia:Cilium is_a: GO:0043226 ! organelle is_a: GO:0120025 ! plasma membrane bounded cell projection +relationship: has_part GO:0030990 ! intraciliary transport particle + +[Term] +id: GO:0006793 +name: phosphorus metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4)." [GOC:ai] +subset: goslim_pir +synonym: "phosphorus metabolism" EXACT [] +is_a: GO:0044237 ! cellular metabolic process + +[Term] +id: GO:0006796 +name: phosphate-containing compound metabolic process +namespace: biological_process +def: "The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid." [GOC:ai] +synonym: "phosphate metabolic process" RELATED [] +synonym: "phosphate metabolism" EXACT [] +xref: MIPS_funcat:01.04 +is_a: GO:0006793 ! phosphorus metabolic process + +[Term] +id: GO:0007154 +name: cell communication +namespace: biological_process +def: "Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:mah] +subset: goslim_pir +subset: goslim_plant +xref: Wikipedia:Cell_signaling +is_a: GO:0009987 ! cellular process + +[Term] +id: GO:0007165 +name: signal transduction +namespace: biological_process +alt_id: GO:0023033 +def: "The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell." [GOC:go_curators, GOC:mtg_signaling_feb11] +comment: Note that signal transduction is defined broadly to include a ligand interacting with a receptor, downstream signaling steps and a response being triggered. A change in form of the signal in every step is not necessary. Note that in many cases the end of this process is regulation of the initiation of transcription. Note that specific transcription factors may be annotated to this term, but core/general transcription machinery such as RNA polymerase should not. +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_plant +synonym: "signaling cascade" NARROW [] +synonym: "signaling pathway" RELATED [] +synonym: "signalling cascade" NARROW [] +synonym: "signalling pathway" RELATED [GOC:mah] +xref: MIPS_funcat:30 +xref: Wikipedia:Signal_transduction +is_a: GO:0009987 ! cellular process +is_a: GO:0050794 ! regulation of cellular process +relationship: part_of GO:0007154 ! cell communication +relationship: part_of GO:0023052 ! signaling +relationship: part_of GO:0051716 ! cellular response to stimulus + +[Term] +id: GO:0008150 +name: biological_process +namespace: biological_process +alt_id: GO:0000004 +alt_id: GO:0007582 +alt_id: GO:0044699 +def: "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." [GOC:pdt] +comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +subset: goslim_pombe +subset: goslim_yeast +synonym: "biological process" EXACT [] +synonym: "physiological process" EXACT [] +synonym: "single organism process" RELATED [] +synonym: "single-organism process" RELATED [] +xref: Wikipedia:Biological_process +created_by: janelomax +creation_date: 2012-09-19T15:05:24Z + +[Term] +id: GO:0008152 +name: metabolic process +namespace: biological_process +alt_id: GO:0044236 +alt_id: GO:0044710 +def: "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation." [GOC:go_curators, ISBN:0198547684] +comment: Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions. +subset: gocheck_do_not_manually_annotate +subset: goslim_chembl +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +synonym: "metabolic process resulting in cell growth" NARROW [] +synonym: "metabolism" EXACT [] +synonym: "metabolism resulting in cell growth" NARROW [] +synonym: "multicellular organism metabolic process" NARROW [] +synonym: "single-organism metabolic process" RELATED [] +xref: MIPS_funcat:01 +xref: Wikipedia:Metabolism +is_a: GO:0008150 ! biological_process +created_by: janelomax +creation_date: 2012-10-17T15:46:40Z + +[Term] +id: GO:0009892 +name: negative regulation of metabolic process +namespace: biological_process +alt_id: GO:0044252 +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism." [GOC:go_curators] +synonym: "down regulation of metabolic process" EXACT [] +synonym: "down-regulation of metabolic process" EXACT [] +synonym: "downregulation of metabolic process" EXACT [] +synonym: "inhibition of metabolic process" NARROW [] +synonym: "inhibition of organismal metabolic process" NARROW [] +synonym: "negative regulation of metabolism" EXACT [] +synonym: "negative regulation of multicellular organismal metabolic process" NARROW [] +synonym: "negative regulation of organismal metabolism" EXACT [] +is_a: GO:0019222 ! regulation of metabolic process +is_a: GO:0048519 ! negative regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0008152 ! metabolic process +relationship: negatively_regulates GO:0008152 ! metabolic process + +[Term] +id: GO:0009893 +name: positive regulation of metabolic process +namespace: biological_process +alt_id: GO:0044253 +def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism." [GOC:go_curators] +synonym: "activation of metabolic process" NARROW [] +synonym: "positive regulation of metabolism" EXACT [] +synonym: "positive regulation of multicellular organismal metabolic process" NARROW [] +synonym: "positive regulation of organismal metabolism" NARROW [] +synonym: "stimulation of metabolic process" NARROW [] +synonym: "stimulation of organismal metabolic process" NARROW [] +synonym: "up regulation of metabolic process" EXACT [] +synonym: "up-regulation of metabolic process" EXACT [] +synonym: "up-regulation of organismal metabolic process" NARROW [] +synonym: "upregulation of metabolic process" EXACT [] +is_a: GO:0019222 ! regulation of metabolic process +is_a: GO:0048518 ! positive regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0008152 ! metabolic process +relationship: positively_regulates GO:0008152 ! metabolic process + +[Term] +id: GO:0009966 +name: regulation of signal transduction +namespace: biological_process +alt_id: GO:0035466 +def: "Any process that modulates the frequency, rate or extent of signal transduction." [GOC:sm] +synonym: "regulation of signaling pathway" RELATED [] +synonym: "regulation of signalling pathway" RELATED [GOC:mah] +is_a: GO:0010646 ! regulation of cell communication +is_a: GO:0023051 ! regulation of signaling +is_a: GO:0048583 ! regulation of response to stimulus +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0007165 ! signal transduction +relationship: regulates GO:0007165 ! signal transduction + +[Term] +id: GO:0009967 +name: positive regulation of signal transduction +namespace: biological_process +alt_id: GO:0035468 +def: "Any process that activates or increases the frequency, rate or extent of signal transduction." [GOC:sm] +synonym: "activation of signal transduction" NARROW [] +synonym: "positive regulation of signaling pathway" RELATED [] +synonym: "positive regulation of signalling pathway" RELATED [GOC:mah] +synonym: "stimulation of signal transduction" NARROW [] +synonym: "up regulation of signal transduction" EXACT [] +synonym: "up-regulation of signal transduction" EXACT [] +synonym: "upregulation of signal transduction" EXACT [] +is_a: GO:0009966 ! regulation of signal transduction +is_a: GO:0010647 ! positive regulation of cell communication +is_a: GO:0023056 ! positive regulation of signaling +is_a: GO:0048584 ! positive regulation of response to stimulus +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0007165 ! signal transduction +relationship: positively_regulates GO:0007165 ! signal transduction + +[Term] +id: GO:0009968 +name: negative regulation of signal transduction +namespace: biological_process +alt_id: GO:0035467 +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction." [GOC:sm] +synonym: "down regulation of signal transduction" EXACT [] +synonym: "down-regulation of signal transduction" EXACT [] +synonym: "downregulation of signal transduction" EXACT [] +synonym: "inhibition of signal transduction" NARROW [] +synonym: "negative regulation of signaling pathway" RELATED [] +synonym: "negative regulation of signalling pathway" RELATED [GOC:mah] +is_a: GO:0009966 ! regulation of signal transduction +is_a: GO:0010648 ! negative regulation of cell communication +is_a: GO:0023057 ! negative regulation of signaling +is_a: GO:0048585 ! negative regulation of response to stimulus +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0007165 ! signal transduction +relationship: negatively_regulates GO:0007165 ! signal transduction + +[Term] +id: GO:0009987 +name: cellular process +namespace: biological_process +alt_id: GO:0008151 +alt_id: GO:0044763 +alt_id: GO:0050875 +def: "Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:go_curators, GOC:isa_complete] +subset: goslim_plant +synonym: "cell growth and/or maintenance" NARROW [] +synonym: "cell physiology" EXACT [] +synonym: "cellular physiological process" EXACT [] +synonym: "single-organism cellular process" RELATED [] +is_a: GO:0008150 ! biological_process +created_by: janelomax +creation_date: 2012-12-11T16:56:55Z + +[Term] +id: GO:0010562 +name: positive regulation of phosphorus metabolic process +namespace: biological_process +def: "Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus." [GOC:dph, GOC:tb] +is_a: GO:0031325 ! positive regulation of cellular metabolic process +is_a: GO:0051174 ! regulation of phosphorus metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0006793 ! phosphorus metabolic process +relationship: positively_regulates GO:0006793 ! phosphorus metabolic process + +[Term] +id: GO:0010563 +name: negative regulation of phosphorus metabolic process +namespace: biological_process +def: "Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus." [GOC:dph, GOC:tb] +is_a: GO:0031324 ! negative regulation of cellular metabolic process +is_a: GO:0051174 ! regulation of phosphorus metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0006793 ! phosphorus metabolic process +relationship: negatively_regulates GO:0006793 ! phosphorus metabolic process + +[Term] +id: GO:0010646 +name: regulation of cell communication +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:dph, GOC:tb] +is_a: GO:0050794 ! regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0007154 ! cell communication +relationship: regulates GO:0007154 ! cell communication + +[Term] +id: GO:0010647 +name: positive regulation of cell communication +namespace: biological_process +def: "Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:dph, GOC:tb] +is_a: GO:0010646 ! regulation of cell communication +is_a: GO:0048522 ! positive regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0007154 ! cell communication +relationship: positively_regulates GO:0007154 ! cell communication + +[Term] +id: GO:0010648 +name: negative regulation of cell communication +namespace: biological_process +def: "Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." [GOC:dph, GOC:tb] +is_a: GO:0010646 ! regulation of cell communication +is_a: GO:0048523 ! negative regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0007154 ! cell communication +relationship: negatively_regulates GO:0007154 ! cell communication + +[Term] +id: GO:0016020 +name: membrane +namespace: cellular_component +def: "A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it." [GOC:dos, GOC:mah, ISBN:0815316194] +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_metagenomics +subset: goslim_pir +subset: goslim_plant +subset: goslim_yeast +xref: Wikipedia:Biological_membrane +is_a: GO:0110165 ! cellular anatomical entity + +[Term] +id: GO:0016301 +name: kinase activity +namespace: molecular_function +def: "Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [ISBN:0198506732] +comment: Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term. +subset: goslim_chembl +subset: goslim_generic +subset: goslim_metagenomics +subset: goslim_plant +subset: goslim_yeast +synonym: "phosphokinase activity" EXACT [] +xref: Reactome:R-HSA-6788855 "FN3KRP phosphorylates PsiAm, RibAm" +xref: Reactome:R-HSA-6788867 "FN3K phosphorylates ketosamines" +is_a: GO:0016772 ! transferase activity, transferring phosphorus-containing groups +relationship: part_of GO:0016310 ! phosphorylation + +[Term] +id: GO:0016310 +name: phosphorylation +namespace: biological_process +def: "The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide." [ISBN:0198506732] +subset: goslim_chembl +subset: goslim_metagenomics +xref: Wikipedia:Phosphorylation +is_a: GO:0006796 ! phosphate-containing compound metabolic process + +[Term] +id: GO:0016740 +name: transferase activity +namespace: molecular_function +def: "Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2." [ISBN:0198506732] +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_chembl +subset: goslim_metagenomics +subset: goslim_mouse +subset: goslim_pir +subset: goslim_plant +subset: goslim_yeast +xref: EC:2 +xref: Reactome:R-HSA-1483089 "PE is converted to PS by PTDSS2" +xref: Reactome:R-HSA-1483186 "PC is converted to PS by PTDSS1" +xref: Reactome:R-HSA-5668414 "TRAF2 ubiquitinates cIAP1,2 in cIAP1,2:TRAF1:TRAF2:TRAF3:NIK" +xref: Reactome:R-HSA-6787403 "GTPBP3 and MTO1 transform uridine-34 yielding 5-taurinomethyluridine-34 in tRNA" +xref: Reactome:R-HSA-8868783 "TSR3 transfers aminocarboxypropyl group from S-adenosylmethionine to N(1)-methylpseudouridine-1248 of 18SE rRNA yielding N(1)-methyl-N(3)-aminocarboxypropylpseudouridine-1248" +is_a: GO:0003824 ! catalytic activity + +[Term] +id: GO:0016772 +name: transferase activity, transferring phosphorus-containing groups +namespace: molecular_function +def: "Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor)." [GOC:jl, ISBN:0198506732] +comment: Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides. +subset: goslim_chembl +xref: EC:2.7 +is_a: GO:0016740 ! transferase activity + +[Term] +id: GO:0019220 +name: regulation of phosphate metabolic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates." [GOC:go_curators] +synonym: "regulation of phosphate metabolism" EXACT [] +is_a: GO:0051174 ! regulation of phosphorus metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0006796 ! phosphate-containing compound metabolic process +relationship: regulates GO:0006796 ! phosphate-containing compound metabolic process + +[Term] +id: GO:0019222 +name: regulation of metabolic process +namespace: biological_process +alt_id: GO:0044246 +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism." [GOC:go_curators] +subset: goslim_metagenomics +synonym: "regulation of metabolism" EXACT [] +synonym: "regulation of multicellular organismal metabolic process" NARROW [] +synonym: "regulation of organismal metabolic process" NARROW [GOC:tb] +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0008152 ! metabolic process +relationship: regulates GO:0008152 ! metabolic process + +[Term] +id: GO:0023051 +name: regulation of signaling +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of a signaling process." [GOC:mtg_signal] +synonym: "regulation of signaling process" RELATED [GOC:bf] +synonym: "regulation of signalling process" RELATED [GOC:mah] +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0023052 ! signaling +relationship: regulates GO:0023052 ! signaling +creation_date: 2010-02-16T09:30:50Z + +[Term] +id: GO:0023052 +name: signaling +namespace: biological_process +alt_id: GO:0023046 +alt_id: GO:0044700 +def: "The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered." [GOC:mtg_signal, GOC:mtg_signaling_feb11, GOC:signaling] +comment: Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change. +subset: goslim_agr +subset: goslim_flybase_ribbon +subset: goslim_mouse +subset: goslim_pombe +subset: goslim_yeast +synonym: "biological signaling" EXACT [] +synonym: "signaling process" EXACT [] +synonym: "signalling" EXACT [] +synonym: "signalling process" RELATED [GOC:mah] +synonym: "single organism signaling" RELATED [] +is_a: GO:0008150 ! biological_process +created_by: janelomax +creation_date: 2010-02-16T09:30:50Z + +[Term] +id: GO:0023056 +name: positive regulation of signaling +namespace: biological_process +def: "Any process that activates, maintains or increases the frequency, rate or extent of a signaling process." [GOC:mtg_signal] +synonym: "positive regulation of signaling process" RELATED [GOC:bf] +synonym: "positive regulation of signalling process" EXACT [GOC:mah] +is_a: GO:0023051 ! regulation of signaling +is_a: GO:0048518 ! positive regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0023052 ! signaling +relationship: positively_regulates GO:0023052 ! signaling +creation_date: 2010-02-16T09:30:50Z + +[Term] +id: GO:0023057 +name: negative regulation of signaling +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process." [GOC:mtg_signal] +synonym: "negative regulation of signaling process" RELATED [GOC:bf] +synonym: "negative regulation of signalling process" RELATED [GOC:mah] +is_a: GO:0023051 ! regulation of signaling +is_a: GO:0048519 ! negative regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0023052 ! signaling +relationship: negatively_regulates GO:0023052 ! signaling +creation_date: 2010-02-16T09:30:50Z + +[Term] +id: GO:0030545 +name: receptor regulator activity +namespace: molecular_function +def: "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed." [GOC:ceb] +xref: MIPS_funcat:18.02.07 +is_a: GO:0098772 ! molecular function regulator + +[Term] +id: GO:0030546 +name: signaling receptor activator activity +namespace: molecular_function +def: "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased." [GOC:ceb] +synonym: "receptor activator activity" BROAD [] +is_a: GO:0030545 ! receptor regulator activity + +[Term] +id: GO:0030990 +name: intraciliary transport particle +namespace: cellular_component +def: "A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules." [GOC:cilia, GOC:kmv, PMID:14570576, PMID:22118932, PMID:23945166] +comment: Note that we deem cilia and microtubule-based flagella to be equivalent. +subset: goslim_pir +synonym: "IFT complex" RELATED [] +synonym: "intraflagellar transport complex" EXACT [] +synonym: "intraflagellar transport particle" EXACT [] +is_a: GO:0032991 ! protein-containing complex + +[Term] +id: GO:0031323 +name: regulation of cellular metabolic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances." [GOC:mah] +synonym: "regulation of cellular metabolism" EXACT [] +is_a: GO:0019222 ! regulation of metabolic process +is_a: GO:0050794 ! regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0044237 ! cellular metabolic process +relationship: regulates GO:0044237 ! cellular metabolic process + +[Term] +id: GO:0031324 +name: negative regulation of cellular metabolic process +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances." [GOC:mah] +synonym: "down regulation of cellular metabolic process" EXACT [] +synonym: "down-regulation of cellular metabolic process" EXACT [] +synonym: "downregulation of cellular metabolic process" EXACT [] +synonym: "inhibition of cellular metabolic process" NARROW [] +synonym: "negative regulation of cellular metabolism" EXACT [] +is_a: GO:0009892 ! negative regulation of metabolic process +is_a: GO:0031323 ! regulation of cellular metabolic process +is_a: GO:0048523 ! negative regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0044237 ! cellular metabolic process +relationship: negatively_regulates GO:0044237 ! cellular metabolic process + +[Term] +id: GO:0031325 +name: positive regulation of cellular metabolic process +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances." [GOC:mah] +synonym: "activation of cellular metabolic process" NARROW [] +synonym: "positive regulation of cellular metabolism" EXACT [] +synonym: "stimulation of cellular metabolic process" NARROW [] +synonym: "up regulation of cellular metabolic process" EXACT [] +synonym: "up-regulation of cellular metabolic process" EXACT [] +synonym: "upregulation of cellular metabolic process" EXACT [] +is_a: GO:0009893 ! positive regulation of metabolic process +is_a: GO:0031323 ! regulation of cellular metabolic process +is_a: GO:0048522 ! positive regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0044237 ! cellular metabolic process +relationship: positively_regulates GO:0044237 ! cellular metabolic process + +[Term] +id: GO:0032091 +name: negative regulation of protein binding +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding." [GOC:mah] +synonym: "down regulation of protein binding" EXACT [] +synonym: "down-regulation of protein binding" EXACT [] +synonym: "downregulation of protein binding" EXACT [] +synonym: "inhibition of protein binding" NARROW [] +is_a: GO:0043393 ! regulation of protein binding +is_a: GO:0051100 ! negative regulation of binding +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0005515 ! protein binding +relationship: negatively_regulates GO:0005515 ! protein binding + +[Term] +id: GO:0032092 +name: positive regulation of protein binding +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of protein binding." [GOC:mah] +synonym: "activation of protein binding" NARROW [] +synonym: "stimulation of protein binding" NARROW [] +synonym: "up regulation of protein binding" EXACT [] +synonym: "up-regulation of protein binding" EXACT [] +synonym: "upregulation of protein binding" EXACT [] +is_a: GO:0043393 ! regulation of protein binding +is_a: GO:0051099 ! positive regulation of binding +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0005515 ! protein binding +relationship: positively_regulates GO:0005515 ! protein binding + +[Term] +id: GO:0032991 +name: protein-containing complex +namespace: cellular_component +alt_id: GO:0043234 +def: "A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together." [GOC:dos, GOC:mah] +comment: A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole. +subset: goslim_agr +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_generic +subset: goslim_pir +synonym: "macromolecular complex" EXACT [] +synonym: "macromolecule complex" EXACT [] +synonym: "protein complex" NARROW [] +synonym: "protein containing complex" EXACT [] +synonym: "protein-protein complex" NARROW [] +is_a: GO:0005575 ! cellular_component + +[Term] +id: GO:0033673 +name: negative regulation of kinase activity +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [GOC:mah] +synonym: "down regulation of kinase activity" EXACT [] +synonym: "down-regulation of kinase activity" EXACT [] +synonym: "downregulation of kinase activity" EXACT [] +synonym: "inhibition of kinase activity" NARROW [] +synonym: "kinase inhibitor" NARROW [] +is_a: GO:0042326 ! negative regulation of phosphorylation +is_a: GO:0043549 ! regulation of kinase activity +is_a: GO:0051348 ! negative regulation of transferase activity +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0016301 ! kinase activity +relationship: negatively_regulates GO:0016301 ! kinase activity + +[Term] +id: GO:0033674 +name: positive regulation of kinase activity +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [GOC:mah] +synonym: "kinase activator" NARROW [] +synonym: "stimulation of kinase activity" NARROW [] +synonym: "up regulation of kinase activity" EXACT [] +synonym: "up-regulation of kinase activity" EXACT [] +synonym: "upregulation of kinase activity" EXACT [] +is_a: GO:0042327 ! positive regulation of phosphorylation +is_a: GO:0043549 ! regulation of kinase activity +is_a: GO:0051347 ! positive regulation of transferase activity +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0016301 ! kinase activity +relationship: positively_regulates GO:0016301 ! kinase activity + +[Term] +id: GO:0035556 +name: intracellular signal transduction +namespace: biological_process +alt_id: GO:0007242 +alt_id: GO:0007243 +alt_id: GO:0023013 +alt_id: GO:0023034 +def: "The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell." [GOC:bf, GOC:jl, GOC:signaling, ISBN:3527303782] +synonym: "intracellular protein kinase cascade" NARROW [GOC:signaling] +synonym: "intracellular signal transduction pathway" NARROW [] +synonym: "intracellular signaling cascade" RELATED [GOC:signaling] +synonym: "intracellular signaling chain" EXACT [ISBN:3527303782] +synonym: "intracellular signaling pathway" RELATED [] +synonym: "protein kinase cascade" NARROW [GOC:signaling] +synonym: "signal transduction via intracellular signaling cascade" RELATED [] +synonym: "signal transmission via intracellular cascade" NARROW [] +is_a: GO:0007165 ! signal transduction +intersection_of: GO:0007165 ! signal transduction +intersection_of: occurs_in GO:0005622 ! intracellular +relationship: occurs_in GO:0005622 ! intracellular +created_by: rfoulger +creation_date: 2010-05-14T01:14:37Z + +[Term] +id: GO:0038023 +alt_id: GO:0004872 + +[Term] +id: GO:0042325 +name: regulation of phosphorylation +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule." [GOC:jl] +is_a: GO:0019220 ! regulation of phosphate metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0016310 ! phosphorylation +relationship: regulates GO:0016310 ! phosphorylation + +[Term] +id: GO:0042326 +name: negative regulation of phosphorylation +namespace: biological_process +def: "Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule." [GOC:jl] +synonym: "down regulation of phosphorylation" EXACT [] +synonym: "down-regulation of phosphorylation" EXACT [] +synonym: "downregulation of phosphorylation" EXACT [] +synonym: "inhibition of phosphorylation" NARROW [] +is_a: GO:0042325 ! regulation of phosphorylation +is_a: GO:0045936 ! negative regulation of phosphate metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0016310 ! phosphorylation +relationship: negatively_regulates GO:0016310 ! phosphorylation + +[Term] +id: GO:0042327 +name: positive regulation of phosphorylation +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule." [GOC:jl] +synonym: "activation of phosphorylation" NARROW [] +synonym: "stimulation of phosphorylation" NARROW [] +synonym: "up regulation of phosphorylation" EXACT [] +synonym: "up-regulation of phosphorylation" EXACT [] +synonym: "upregulation of phosphorylation" EXACT [] +is_a: GO:0042325 ! regulation of phosphorylation +is_a: GO:0045937 ! positive regulation of phosphate metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0016310 ! phosphorylation +relationship: positively_regulates GO:0016310 ! phosphorylation [Term] id: GO:0042995 name: cell projection -is_a: GO:0044464 ! cell part +namespace: cellular_component +def: "A prolongation or process extending from a cell, e.g. a flagellum or axon." [GOC:jl, http://www.cogsci.princeton.edu/~wn/] +subset: goslim_agr +subset: goslim_flybase_ribbon +subset: goslim_mouse +subset: goslim_pir +synonym: "cell process" BROAD [] +synonym: "cellular process" BROAD [] +synonym: "cellular projection" EXACT [] +is_a: GO:0110165 ! cellular anatomical entity + +[Term] +id: GO:0043085 +name: positive regulation of catalytic activity +namespace: biological_process +alt_id: GO:0048554 +def: "Any process that activates or increases the activity of an enzyme." [GOC:ebc, GOC:jl, GOC:tb, GOC:vw] +subset: goslim_chembl +synonym: "activation of enzyme activity" NARROW [] +synonym: "activation of metalloenzyme activity" NARROW [] +synonym: "positive regulation of enzyme activity" EXACT [GOC:tb] +synonym: "positive regulation of metalloenzyme activity" NARROW [] +synonym: "stimulation of enzyme activity" NARROW [] +synonym: "stimulation of metalloenzyme activity" NARROW [] +synonym: "up regulation of enzyme activity" EXACT [] +synonym: "up regulation of metalloenzyme activity" NARROW [] +synonym: "up-regulation of enzyme activity" EXACT [] +synonym: "up-regulation of metalloenzyme activity" NARROW [] +synonym: "upregulation of enzyme activity" EXACT [] +synonym: "upregulation of metalloenzyme activity" NARROW [] +xref: MIPS_funcat:18.02.01.01 +is_a: GO:0044093 ! positive regulation of molecular function +is_a: GO:0050790 ! regulation of catalytic activity +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0003824 ! catalytic activity +relationship: positively_regulates GO:0003824 ! catalytic activity + +[Term] +id: GO:0043086 +name: negative regulation of catalytic activity +namespace: biological_process +alt_id: GO:0048553 +def: "Any process that stops or reduces the activity of an enzyme." [GOC:ebc, GOC:jl, GOC:tb, GOC:vw] +synonym: "down regulation of enzyme activity" EXACT [] +synonym: "down regulation of metalloenzyme activity" NARROW [] +synonym: "down-regulation of enzyme activity" EXACT [] +synonym: "down-regulation of metalloenzyme activity" EXACT [] +synonym: "downregulation of enzyme activity" EXACT [] +synonym: "downregulation of metalloenzyme activity" NARROW [] +synonym: "inhibition of enzyme activity" NARROW [] +synonym: "inhibition of metalloenzyme activity" NARROW [] +synonym: "negative regulation of enzyme activity" EXACT [GOC:tb] +synonym: "negative regulation of metalloenzyme activity" NARROW [] +is_a: GO:0044092 ! negative regulation of molecular function +is_a: GO:0050790 ! regulation of catalytic activity +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0003824 ! catalytic activity +relationship: negatively_regulates GO:0003824 ! catalytic activity [Term] id: GO:0043226 name: organelle -is_a: GO:0005575 ! cellular_component +namespace: cellular_component +def: "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane." [GOC:go_curators] +subset: goslim_chembl +subset: goslim_generic +subset: goslim_pir +xref: NIF_Subcellular:sao1539965131 +xref: Wikipedia:Organelle +is_a: GO:0110165 ! cellular anatomical entity [Term] id: GO:0043227 name: membrane-bounded organelle +namespace: cellular_component +def: "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." [GOC:go_curators] +synonym: "membrane-enclosed organelle" EXACT [] +xref: NIF_Subcellular:sao414196390 is_a: GO:0043226 ! organelle [Term] id: GO:0043229 name: intracellular organelle +namespace: cellular_component +def: "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." [GOC:go_curators] +subset: goslim_pir is_a: GO:0043226 ! organelle -is_a: GO:0044424 ! intracellular part +intersection_of: GO:0043226 ! organelle +intersection_of: part_of GO:0005622 ! intracellular +relationship: part_of GO:0005622 ! intracellular [Term] id: GO:0043231 name: intracellular membrane-bounded organelle +namespace: cellular_component +def: "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." [GOC:go_curators] +subset: goslim_pir +synonym: "intracellular membrane-enclosed organelle" EXACT [] is_a: GO:0043227 ! membrane-bounded organelle is_a: GO:0043229 ! intracellular organelle +[Term] +id: GO:0043393 +name: regulation of protein binding +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of protein binding." [GOC:go_curators] +is_a: GO:0051098 ! regulation of binding +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0005515 ! protein binding +relationship: regulates GO:0005515 ! protein binding + +[Term] +id: GO:0043549 +name: regulation of kinase activity +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [GOC:bf] +is_a: GO:0042325 ! regulation of phosphorylation +is_a: GO:0051338 ! regulation of transferase activity +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0016301 ! kinase activity +relationship: regulates GO:0016301 ! kinase activity + +[Term] +id: GO:0044092 +name: negative regulation of molecular function +namespace: biological_process +def: "Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding." [GO:jl] +is_a: GO:0065009 ! regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0003674 ! molecular_function +relationship: negatively_regulates GO:0003674 ! molecular_function +created_by: jane +creation_date: 2009-04-21T04:07:27Z + +[Term] +id: GO:0044093 +name: positive regulation of molecular function +namespace: biological_process +def: "Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding." [GO:jl] +is_a: GO:0065009 ! regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0003674 ! molecular_function +relationship: positively_regulates GO:0003674 ! molecular_function +created_by: jane +creation_date: 2009-04-21T04:11:06Z + +[Term] +id: GO:0044237 +name: cellular metabolic process +namespace: biological_process +def: "The chemical reactions and pathways by which individual cells transform chemical substances." [GOC:go_curators] +synonym: "cellular metabolism" EXACT [] +synonym: "intermediary metabolism" RELATED [GOC:mah] +is_a: GO:0008152 ! metabolic process +is_a: GO:0009987 ! cellular process + [Term] id: GO:0044424 -name: intracellular part -is_a: GO:0044464 ! cell part +name: obsolete intracellular part +namespace: cellular_component +def: "OBSOLETE. Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." [GOC:jl] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_annotate +is_obsolete: true +consider: GO:0005622 [Term] id: GO:0044464 -name: cell part +name: obsolete cell part +namespace: cellular_component +def: "OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms." [GOC:jl] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_annotate +subset: goslim_pir +synonym: "cellular subcomponent" EXACT [NIF_Subcellular:sao628508602] +synonym: "protoplast" RELATED [GOC:mah] +xref: NIF_Subcellular:sao628508602 +is_obsolete: true +consider: CL:0000000 + +[Term] +id: GO:0045936 +name: negative regulation of phosphate metabolic process +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates." [GOC:go_curators] +synonym: "down regulation of phosphate metabolic process" EXACT [] +synonym: "down-regulation of phosphate metabolic process" EXACT [] +synonym: "downregulation of phosphate metabolic process" EXACT [] +synonym: "inhibition of phosphate metabolic process" NARROW [] +synonym: "negative regulation of phosphate metabolism" EXACT [] +is_a: GO:0010563 ! negative regulation of phosphorus metabolic process +is_a: GO:0019220 ! regulation of phosphate metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0006796 ! phosphate-containing compound metabolic process +relationship: negatively_regulates GO:0006796 ! phosphate-containing compound metabolic process + +[Term] +id: GO:0045937 +name: positive regulation of phosphate metabolic process +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates." [GOC:go_curators] +synonym: "activation of phosphate metabolic process" NARROW [] +synonym: "positive regulation of phosphate metabolism" EXACT [] +synonym: "stimulation of phosphate metabolic process" NARROW [] +synonym: "up regulation of phosphate metabolic process" EXACT [] +synonym: "up-regulation of phosphate metabolic process" EXACT [] +synonym: "upregulation of phosphate metabolic process" EXACT [] +is_a: GO:0010562 ! positive regulation of phosphorus metabolic process +is_a: GO:0019220 ! regulation of phosphate metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0006796 ! phosphate-containing compound metabolic process +relationship: positively_regulates GO:0006796 ! phosphate-containing compound metabolic process + +[Term] +id: GO:0048018 +name: receptor ligand activity +namespace: molecular_function +alt_id: GO:0071884 +def: "The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands)." [GOC:kv, GOC:molecular_function_refactoring, GOC:pdt] +comment: Definition discussed in https://github.com/geneontology/go-ontology/issues/14220 +subset: goslim_chembl +synonym: "receptor agonist activity" BROAD [GOC:molecular_function_refactoring] +synonym: "signaling molecule" EXACT [] +synonym: "signaling receptor ligand activity" EXACT [] +synonym: "vitamin D receptor activator activity" NARROW [] +is_a: GO:0005102 ! signaling receptor binding +is_a: GO:0030546 ! signaling receptor activator activity +relationship: part_of GO:0007165 ! signal transduction +created_by: midori +creation_date: 2010-09-13T04:51:59Z + +[Term] +id: GO:0048518 +name: positive regulation of biological process +namespace: biological_process +alt_id: GO:0043119 +def: "Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." [GOC:jid] +subset: gocheck_do_not_annotate +synonym: "activation of biological process" NARROW [] +synonym: "positive regulation of physiological process" EXACT [] +synonym: "stimulation of biological process" NARROW [] +synonym: "up regulation of biological process" EXACT [] +synonym: "up-regulation of biological process" EXACT [] +synonym: "upregulation of biological process" EXACT [] +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0008150 ! biological_process +relationship: positively_regulates GO:0008150 ! biological_process + +[Term] +id: GO:0048519 +name: negative regulation of biological process +namespace: biological_process +alt_id: GO:0043118 +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." [GOC:jid] +subset: gocheck_do_not_annotate +synonym: "down regulation of biological process" EXACT [] +synonym: "down-regulation of biological process" EXACT [] +synonym: "downregulation of biological process" EXACT [] +synonym: "inhibition of biological process" NARROW [] +synonym: "negative regulation of physiological process" EXACT [] +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0008150 ! biological_process +relationship: negatively_regulates GO:0008150 ! biological_process + +[Term] +id: GO:0048522 +name: positive regulation of cellular process +namespace: biological_process +alt_id: GO:0051242 +def: "Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:jid] +synonym: "activation of cellular process" NARROW [] +synonym: "positive regulation of cellular physiological process" EXACT [] +synonym: "stimulation of cellular process" NARROW [] +synonym: "up regulation of cellular process" EXACT [] +synonym: "up-regulation of cellular process" EXACT [] +synonym: "upregulation of cellular process" EXACT [] +is_a: GO:0048518 ! positive regulation of biological process +is_a: GO:0050794 ! regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0009987 ! cellular process +relationship: positively_regulates GO:0009987 ! cellular process + +[Term] +id: GO:0048523 +name: negative regulation of cellular process +namespace: biological_process +alt_id: GO:0051243 +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:jid] +synonym: "down regulation of cellular process" EXACT [] +synonym: "down-regulation of cellular process" EXACT [] +synonym: "downregulation of cellular process" EXACT [] +synonym: "inhibition of cellular process" NARROW [] +synonym: "negative regulation of cellular physiological process" EXACT [] +is_a: GO:0048519 ! negative regulation of biological process +is_a: GO:0050794 ! regulation of cellular process +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0009987 ! cellular process +relationship: negatively_regulates GO:0009987 ! cellular process + +[Term] +id: GO:0048583 +name: regulation of response to stimulus +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus." [GOC:jid] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_manually_annotate +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0050896 ! response to stimulus +relationship: regulates GO:0050896 ! response to stimulus + +[Term] +id: GO:0048584 +name: positive regulation of response to stimulus +namespace: biological_process +def: "Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus." [GOC:jid] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_manually_annotate +synonym: "activation of response to stimulus" NARROW [] +synonym: "stimulation of response to stimulus" NARROW [] +synonym: "up regulation of response to stimulus" EXACT [] +synonym: "up-regulation of response to stimulus" EXACT [] +synonym: "upregulation of response to stimulus" EXACT [] +is_a: GO:0048518 ! positive regulation of biological process +is_a: GO:0048583 ! regulation of response to stimulus +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0050896 ! response to stimulus +relationship: positively_regulates GO:0050896 ! response to stimulus + +[Term] +id: GO:0048585 +name: negative regulation of response to stimulus +namespace: biological_process +def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus." [GOC:jid] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_manually_annotate +synonym: "down regulation of response to stimulus" EXACT [] +synonym: "down-regulation of response to stimulus" EXACT [] +synonym: "downregulation of response to stimulus" EXACT [] +synonym: "inhibition of response to stimulus" NARROW [] +is_a: GO:0048519 ! negative regulation of biological process +is_a: GO:0048583 ! regulation of response to stimulus +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0050896 ! response to stimulus +relationship: negatively_regulates GO:0050896 ! response to stimulus + +[Term] +id: GO:0050789 +name: regulation of biological process +namespace: biological_process +alt_id: GO:0050791 +def: "Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." [GOC:ai, GOC:go_curators] +subset: gocheck_do_not_annotate +subset: goslim_aspergillus +subset: goslim_candida +subset: goslim_pir +synonym: "regulation of physiological process" EXACT [] +is_a: GO:0065007 ! biological regulation +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0008150 ! biological_process +relationship: regulates GO:0008150 ! biological_process + +[Term] +id: GO:0050790 +name: regulation of catalytic activity +namespace: biological_process +alt_id: GO:0048552 +def: "Any process that modulates the activity of an enzyme." [GOC:ai, GOC:ebc, GOC:vw] +subset: goslim_chembl +synonym: "regulation of enzyme activity" EXACT [] +synonym: "regulation of metalloenzyme activity" NARROW [] +xref: MIPS_funcat:18.02.01 +is_a: GO:0065009 ! regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0003824 ! catalytic activity +relationship: regulates GO:0003824 ! catalytic activity + +[Term] +id: GO:0050794 +name: regulation of cellular process +namespace: biological_process +alt_id: GO:0051244 +def: "Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:go_curators] +synonym: "regulation of cellular physiological process" EXACT [] +is_a: GO:0050789 ! regulation of biological process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0009987 ! cellular process +relationship: regulates GO:0009987 ! cellular process + +[Term] +id: GO:0050896 +name: response to stimulus +namespace: biological_process +alt_id: GO:0051869 +def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." [GOC:ai, GOC:bf] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_manually_annotate +subset: goslim_agr +subset: goslim_flybase_ribbon +subset: goslim_mouse +subset: goslim_pir +synonym: "physiological response to stimulus" EXACT [] +xref: MIPS_funcat:34.11 +is_a: GO:0008150 ! biological_process + +[Term] +id: GO:0051098 +name: regulation of binding +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule." [GOC:ai] +is_a: GO:0065009 ! regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0005488 ! binding +relationship: regulates GO:0005488 ! binding + +[Term] +id: GO:0051099 +name: positive regulation of binding +namespace: biological_process +def: "Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule." [GOC:ai] +synonym: "activation of binding" NARROW [] +synonym: "stimulation of binding" NARROW [] +synonym: "up regulation of binding" EXACT [] +synonym: "up-regulation of binding" EXACT [] +synonym: "upregulation of binding" EXACT [] +is_a: GO:0044093 ! positive regulation of molecular function +is_a: GO:0051098 ! regulation of binding +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0005488 ! binding +relationship: positively_regulates GO:0005488 ! binding + +[Term] +id: GO:0051100 +name: negative regulation of binding +namespace: biological_process +def: "Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule." [GOC:ai] +synonym: "down regulation of binding" EXACT [] +synonym: "down-regulation of binding" EXACT [] +synonym: "downregulation of binding" EXACT [] +synonym: "inhibition of binding" NARROW [] +is_a: GO:0044092 ! negative regulation of molecular function +is_a: GO:0051098 ! regulation of binding +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0005488 ! binding +relationship: negatively_regulates GO:0005488 ! binding + +[Term] +id: GO:0051174 +name: regulation of phosphorus metabolic process +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus." [GOC:ai] +synonym: "regulation of phosphorus metabolism" EXACT [] +is_a: GO:0031323 ! regulation of cellular metabolic process +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0006793 ! phosphorus metabolic process +relationship: regulates GO:0006793 ! phosphorus metabolic process + +[Term] +id: GO:0051338 +name: regulation of transferase activity +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2." [EC:2.-.-.-, GOC:ai] +comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. +subset: gocheck_do_not_manually_annotate +synonym: "transferase regulator" EXACT [] +is_a: GO:0050790 ! regulation of catalytic activity +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0016740 ! transferase activity +relationship: regulates GO:0016740 ! transferase activity + +[Term] +id: GO:0051347 +name: positive regulation of transferase activity +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor." [GOC:ai] +comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. +subset: gocheck_do_not_manually_annotate +synonym: "activation of transferase activity" NARROW [] +synonym: "stimulation of transferase activity" NARROW [] +synonym: "transferase activator" EXACT [] +synonym: "up regulation of transferase activity" EXACT [] +synonym: "up-regulation of transferase activity" EXACT [] +synonym: "upregulation of transferase activity" EXACT [] +is_a: GO:0043085 ! positive regulation of catalytic activity +is_a: GO:0051338 ! regulation of transferase activity +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0016740 ! transferase activity +relationship: positively_regulates GO:0016740 ! transferase activity + +[Term] +id: GO:0051348 +name: negative regulation of transferase activity +namespace: biological_process +def: "Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor." [GOC:ai] +comment: This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. +subset: gocheck_do_not_manually_annotate +synonym: "down regulation of transferase activity" EXACT [] +synonym: "down-regulation of transferase activity" EXACT [] +synonym: "downregulation of transferase activity" EXACT [] +synonym: "inhibition of transferase activity" NARROW [] +synonym: "transferase inhibitor" EXACT [] +is_a: GO:0043086 ! negative regulation of catalytic activity +is_a: GO:0051338 ! regulation of transferase activity +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0016740 ! transferase activity +relationship: negatively_regulates GO:0016740 ! transferase activity + +[Term] +id: GO:0051716 +name: cellular response to stimulus +namespace: biological_process +def: "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell." [GOC:bf, GOC:jl] +comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. +subset: gocheck_do_not_manually_annotate +is_a: GO:0009987 ! cellular process +is_a: GO:0050896 ! response to stimulus + +[Term] +id: GO:0065007 +name: biological regulation +namespace: biological_process +def: "Any process that modulates a measurable attribute of any biological process, quality or function." [GOC:dph, GOC:isa_complete, GOC:mah, GOC:pr, GOC:vw] +subset: gocheck_do_not_annotate +subset: goslim_pir +synonym: "regulation" BROAD [] +is_a: GO:0008150 ! biological_process + +[Term] +id: GO:0065009 +name: regulation of molecular function +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding." [GOC:isa_complete] +subset: gocheck_do_not_annotate +subset: goslim_pir +subset: goslim_plant +synonym: "regulation of a molecular function" EXACT [] +is_a: GO:0065007 ! biological regulation +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0003674 ! molecular_function +relationship: regulates GO:0003674 ! molecular_function + +[Term] +id: GO:0071944 +name: cell periphery +namespace: cellular_component +def: "The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures." [GOC:mah] +subset: goslim_flybase_ribbon +is_a: GO:0110165 ! cellular anatomical entity +created_by: midori +creation_date: 2010-10-04T01:51:47Z + +[Term] +id: GO:0098590 +name: plasma membrane region +namespace: cellular_component +def: "A membrane that is a (regional) part of the plasma membrane." [GOC:dos] +comment: Note that this term should not be used for direct manual annotation as it should always be possible to choose a more specific subclass. +subset: gocheck_do_not_manually_annotate +synonym: "region of plasma membrane" EXACT [] +is_a: GO:0016020 ! membrane +intersection_of: GO:0016020 ! membrane +intersection_of: part_of GO:0005886 ! plasma membrane +relationship: part_of GO:0005886 ! plasma membrane +created_by: davidos +creation_date: 2014-03-06T11:55:32Z + +[Term] +id: GO:0098772 +name: molecular function regulator +namespace: molecular_function +def: "A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators." [GOC:dos, GOC:pt] +subset: goslim_flybase_ribbon +is_a: GO:0003674 ! molecular_function +relationship: part_of GO:0065009 ! regulation of molecular function + +[Term] +id: GO:0098796 +name: membrane protein complex +namespace: cellular_component +def: "Any protein complex that is part of a membrane." [GOC:dos] +subset: goslim_metagenomics +is_a: GO:0032991 ! protein-containing complex +intersection_of: GO:0032991 ! protein-containing complex +intersection_of: part_of GO:0016020 ! membrane +relationship: part_of GO:0016020 ! membrane + +[Term] +id: GO:0098797 +name: plasma membrane protein complex +namespace: cellular_component +def: "Any protein complex that is part of the plasma membrane." [GOC:dos] +is_a: GO:0098796 ! membrane protein complex +intersection_of: GO:0032991 ! protein-containing complex +intersection_of: part_of GO:0005886 ! plasma membrane +relationship: part_of GO:0005886 ! plasma membrane + +[Term] +id: GO:0110165 +name: cellular anatomical entity +namespace: cellular_component +def: "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex." [GOC:kmv] is_a: GO:0005575 ! cellular_component +created_by: kmv +creation_date: 2019-08-12T18:01:37Z [Term] id: GO:0120025 name: plasma membrane bounded cell projection +namespace: cellular_component +def: "A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon." [GOC:krc] is_a: GO:0042995 ! cell projection +intersection_of: GO:0042995 ! cell projection +intersection_of: has_part GO:0098590 ! plasma membrane region +relationship: has_part GO:0098590 ! plasma membrane region +created_by: kchris +creation_date: 2017-03-21T17:26:07Z + +[Term] +id: GO:1900120 +name: regulation of receptor binding +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor." [GOC:signaling, GOC:TermGenie] +synonym: "regulation of receptor ligand" NARROW [GOC:TermGenie] +is_a: GO:0043393 ! regulation of protein binding +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0005102 ! signaling receptor binding +relationship: regulates GO:0005102 ! signaling receptor binding +created_by: bf +creation_date: 2012-02-22T11:40:53Z + +[Term] +id: GO:1900121 +name: negative regulation of receptor binding +namespace: biological_process +def: "Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor." [GOC:signaling, GOC:TermGenie] +synonym: "down regulation of receptor binding" EXACT [GOC:TermGenie] +synonym: "down regulation of receptor-associated protein activity" RELATED [GOC:TermGenie] +synonym: "down-regulation of receptor binding" EXACT [GOC:TermGenie] +synonym: "downregulation of receptor binding" EXACT [GOC:TermGenie] +synonym: "inhibition of receptor binding" NARROW [GOC:TermGenie] +synonym: "inhibition of receptor ligand" NARROW [GOC:TermGenie] +is_a: GO:0032091 ! negative regulation of protein binding +is_a: GO:1900120 ! regulation of receptor binding +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0005102 ! signaling receptor binding +relationship: negatively_regulates GO:0005102 ! signaling receptor binding +created_by: bf +creation_date: 2012-02-22T11:40:57Z + +[Term] +id: GO:1900122 +name: positive regulation of receptor binding +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor." [GOC:signaling, GOC:TermGenie] +synonym: "activation of receptor binding" NARROW [GOC:TermGenie] +synonym: "up regulation of receptor binding" EXACT [GOC:TermGenie] +synonym: "upregulation of receptor binding" EXACT [GOC:TermGenie] +is_a: GO:0032092 ! positive regulation of protein binding +is_a: GO:1900120 ! regulation of receptor binding +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0005102 ! signaling receptor binding +relationship: positively_regulates GO:0005102 ! signaling receptor binding +created_by: bf +creation_date: 2012-02-22T11:41:00Z + +[Term] +id: GO:1902531 +name: regulation of intracellular signal transduction +namespace: biological_process +alt_id: GO:0010627 +def: "Any process that modulates the frequency, rate or extent of intracellular signal transduction." [GOC:dph, GOC:signaling, GOC:tb, GOC:TermGenie] +synonym: "regulation of intracellular protein kinase cascade" NARROW [] +synonym: "regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "regulation of intracellular signaling cascade" EXACT [GOC:TermGenie] +synonym: "regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +is_a: GO:0009966 ! regulation of signal transduction +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0035556 ! intracellular signal transduction +relationship: regulates GO:0035556 ! intracellular signal transduction +created_by: bf +creation_date: 2013-12-02T11:32:52Z + +[Term] +id: GO:1902532 +name: negative regulation of intracellular signal transduction +namespace: biological_process +alt_id: GO:0010741 +def: "Any process that stops, prevents or reduces the frequency, rate or extent of intracellular signal transduction." [GOC:dph, GOC:signaling, GOC:tb, GOC:TermGenie] +synonym: "down regulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "down regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "down regulation of intracellular signaling cascade" NARROW [GOC:TermGenie] +synonym: "down regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "down regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "down regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "down regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "down-regulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "down-regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "down-regulation of intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "down-regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "down-regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "down-regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "down-regulation of signal transmission via intracellular cascade" RELATED [GOC:TermGenie] +synonym: "downregulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "downregulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "downregulation of intracellular signaling cascade" NARROW [GOC:TermGenie] +synonym: "downregulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "downregulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "downregulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "downregulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "inhibition of intracellular signal transduction" NARROW [GOC:TermGenie] +synonym: "inhibition of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "inhibition of intracellular signaling cascade" NARROW [GOC:TermGenie] +synonym: "inhibition of intracellular signaling chain" NARROW [GOC:TermGenie] +synonym: "inhibition of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "inhibition of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "inhibition of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "negative regulation of intracellular protein kinase cascade" EXACT [] +synonym: "negative regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "negative regulation of intracellular signaling cascade" EXACT [GOC:TermGenie] +synonym: "negative regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "negative regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "negative regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "negative regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +is_a: GO:0009968 ! negative regulation of signal transduction +is_a: GO:1902531 ! regulation of intracellular signal transduction +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0035556 ! intracellular signal transduction +relationship: negatively_regulates GO:0035556 ! intracellular signal transduction +created_by: bf +creation_date: 2013-12-02T11:33:01Z + +[Term] +id: GO:1902533 +name: positive regulation of intracellular signal transduction +namespace: biological_process +alt_id: GO:0010740 +def: "Any process that activates or increases the frequency, rate or extent of intracellular signal transduction." [GOC:BHF, GOC:dph, GOC:signaling, GOC:tb, GOC:TermGenie] +synonym: "activation of intracellular signal transduction" NARROW [GOC:TermGenie] +synonym: "activation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "activation of intracellular signaling cascade" NARROW [GOC:TermGenie] +synonym: "activation of intracellular signaling chain" NARROW [GOC:TermGenie] +synonym: "activation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "activation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "activation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "positive regulation of intracellular protein kinase cascade" NARROW [] +synonym: "positive regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "positive regulation of intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "positive regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "positive regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "positive regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "positive regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "up regulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "up regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "up regulation of intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "up regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "up regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "up regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "up regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "up-regulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "up-regulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "up-regulation of intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "up-regulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "up-regulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "up-regulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "up-regulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +synonym: "upregulation of intracellular signal transduction" EXACT [GOC:TermGenie] +synonym: "upregulation of intracellular signal transduction pathway" NARROW [GOC:TermGenie] +synonym: "upregulation of intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "upregulation of intracellular signaling chain" EXACT [GOC:TermGenie] +synonym: "upregulation of intracellular signaling pathway" RELATED [GOC:TermGenie] +synonym: "upregulation of signal transduction via intracellular signaling cascade" RELATED [GOC:TermGenie] +synonym: "upregulation of signal transmission via intracellular cascade" NARROW [GOC:TermGenie] +is_a: GO:0009967 ! positive regulation of signal transduction +is_a: GO:1902531 ! regulation of intracellular signal transduction +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0035556 ! intracellular signal transduction +relationship: positively_regulates GO:0035556 ! intracellular signal transduction +created_by: bf +creation_date: 2013-12-02T11:33:10Z + +[Typedef] +id: has_part +name: has part +namespace: external +xref: BFO:0000051 +is_transitive: true + +[Typedef] +id: negatively_regulates +name: negatively regulates +namespace: external +xref: RO:0002212 +is_a: regulates ! regulates + +[Typedef] +id: occurs_in +name: occurs in +namespace: external +xref: BFO:0000066 +transitive_over: part_of ! part of + +[Typedef] +id: part_of +name: part of +namespace: external +xref: BFO:0000050 +is_transitive: true +inverse_of: has_part ! has part + +[Typedef] +id: positively_regulates +name: positively regulates +namespace: external +xref: RO:0002213 +holds_over_chain: negatively_regulates negatively_regulates +is_a: regulates ! regulates + +[Typedef] +id: regulates +name: regulates +namespace: external +xref: RO:0002211 +is_transitive: true diff --git a/src/ontology/imports/go_import.owl b/src/ontology/imports/go_import.owl index 1491520e..e81bfa1c 100644 --- a/src/ontology/imports/go_import.owl +++ b/src/ontology/imports/go_import.owl @@ -1,77 +1,2697 @@ - + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" + xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> + + + + + + + + + + + + + + + definition + + + + + + + + + + + + + + + + + + + + term replaced by + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + subset_property + + + + + + + + consider + + + + + + + + + + + + + + + + + + + + + + + + + + has_alternative_id + + + + + + + + has_broad_synonym + + + + + + + + database_cross_reference + + + + + + + + has_exact_synonym + + + + + + + + has_narrow_synonym + + + + + + + + has_obo_format_version + + + + + + + + has_obo_namespace + + + + + + + + has_related_synonym + + + + + + + + + + + + + + in_subset + + + + + + + + + + + + + + + + + + + + shorthand + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + BFO:0000050 + external + part_of + part_of + part of + + + + + + + + + BFO:0000051 + external + has_part + has_part + has part + + + + + + + + + + + + BFO:0000066 + external + occurs_in + occurs_in + occurs in + + + + + + + + + RO:0002211 + external + regulates + regulates + regulates + + + + + + + + + RO:0002212 + external + negatively_regulates + negatively_regulates + negatively regulates + + + + + + + + + + + + + RO:0002213 + external + positively_regulates + positively_regulates + positively regulates + + + + + + + + + + + + + A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process. + GO:0005554 + molecular function + molecular_function + GO:0003674 + + + + + + + + + Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex. + molecular_function + + + + + A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process. + GOC:pdt + + + + + + + + + Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. + Wikipedia:Enzyme + enzyme activity + molecular_function + GO:0003824 + + + + + + + catalytic activity + + + + + Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. + GOC:vw + ISBN:0198506732 + + + + + enzyme activity + GOC:dph + GOC:tb + + + + + + + + + + true + + + + + + + + + Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. + receptor binding + Wikipedia:Ligand_(biochemistry) + receptor ligand + molecular_function + receptor-associated protein activity + GO:0005102 + + + + + + Where appropriate, also consider annotating to 'receptor agonist activity ; GO:0048018'. + signaling receptor binding + + + + + Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. + GOC:bf + GOC:ceb + ISBN:0198506732 + + + + + + + + + The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule. + Wikipedia:Binding_(molecular) + ligand + molecular_function + GO:0005488 + + + + Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children. + binding + + + + + The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule. + GOC:ceb + GOC:mah + ISBN:0198506732 + + + + + + + + + Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). + GO:0001948 + GO:0045308 + MIPS_funcat:16.01 + MIPS_funcat:18.01.07 + Reactome:R-HSA-170835 + Reactome:R-HSA-170846 + protein amino acid binding + glycoprotein binding + molecular_function + GO:0005515 + + + + + + + protein binding + + + + + Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). + GOC:go_curators + + + + + Reactome:R-HSA-170835 + An anchoring protein, ZFYVE9 (SARA), recruits SMAD2/3 + + + + + Reactome:R-HSA-170846 + TGFBR2 recruits TGFBR1 + + + + + + + + A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome). + GO:0008372 + NIF_Subcellular:sao1337158144 + cell or subcellular entity + cellular component + cellular_component + subcellular entity + GO:0005575 + + + + + + + + + Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. + cellular_component + + + + + A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome). + GOC:pdt + NIF_Subcellular:sao1337158144 + + + + + subcellular entity + NIF_Subcellular:nlx_subcell_100315 + + + + + + + + + The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. + Wikipedia:Intracellular + internal to cell + protoplasm + cellular_component + nucleocytoplasm + protoplast + GO:0005622 + + + + + + intracellular + + + + + The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. + ISBN:0198506732 + + + + + nucleocytoplasm + GOC:mah + + + + + protoplast + GOC:mah + + + + + + + + + The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. + cell and encapsulating structures + NIF_Subcellular:sao1813327414 + Wikipedia:Cell_(biology) + cellular_component + GO:0005623 + + + + cell + + + + + The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. + GOC:go_curators + + + + + + + + + A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. + MIPS_funcat:70.10 + NIF_Subcellular:sao1702920020 + Wikipedia:Cell_nucleus + cell nucleus + horsetail nucleus + cellular_component + GO:0005634 + + + + + + + + + + + + nucleus + + + + + A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. + GOC:go_curators + + + + + horsetail nucleus + GOC:al + GOC:mah + GOC:vw + PMID:15030757 + + + + + + + + + + + + + + + The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. + GO:0005904 + juxtamembrane + NIF_Subcellular:sao1663586795 + Wikipedia:Cell_membrane + cell membrane + cellular membrane + cytoplasmic membrane + plasmalemma + bacterial inner membrane + inner endospore membrane + plasma membrane lipid bilayer + cellular_component + GO:0005886 + + + + + + + + + + plasma membrane + + + + + The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. + ISBN:0716731363 + + + + + cellular membrane + NIF_Subcellular:sao6433132645 + + + + + plasma membrane lipid bilayer + GOC:mah + + + + + + + + + + + + + + + + A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body. + GO:0072372 + FMA:67181 + NIF_Subcellular:sao787716553 + Wikipedia:Cilium + eukaryotic flagellum + microtubule-based flagellum + primary cilium + cellular_component + flagellum + GO:0005929 + + + + Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms. + cilium + + + + + A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body. + GOC:cilia + GOC:curators + GOC:kmv + GOC:vw + ISBN:0198547684 + PMID:16824949 + PMID:17009929 + PMID:20144998 + + + + + + + + + The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4). + phosphorus metabolism + biological_process + GO:0006793 + + phosphorus metabolic process + + + + + The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4). + GOC:ai + + + + + + + + + The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid. + MIPS_funcat:01.04 + phosphate metabolism + biological_process + phosphate metabolic process + GO:0006796 + phosphate-containing compound metabolic process + + + + + The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid. + GOC:ai + + + + + + + + + Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + Wikipedia:Cell_signaling + biological_process + GO:0007154 + + + cell communication + + + + + Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. + GO:0023033 + MIPS_funcat:30 + Wikipedia:Signal_transduction + signaling cascade + signalling cascade + biological_process + signaling pathway + signalling pathway + GO:0007165 + + + + + + + Note that signal transduction is defined broadly to include a ligand interacting with a receptor, downstream signaling steps and a response being triggered. A change in form of the signal in every step is not necessary. Note that in many cases the end of this process is regulation of the initiation of transcription. Note that specific transcription factors may be annotated to this term, but core/general transcription machinery such as RNA polymerase should not. + signal transduction + + + + + The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. + GOC:go_curators + GOC:mtg_signaling_feb11 + + + + + signalling pathway + GOC:mah + + + + + + + + A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. + janelomax + 2012-09-19T15:05:24Z + GO:0000004 + GO:0007582 + GO:0044699 + Wikipedia:Biological_process + biological process + physiological process + biological_process + single organism process + single-organism process + GO:0008150 + + + + + + + + + + Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. + biological_process + + + + + A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. + GOC:pdt + + + + + + + + + The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. + janelomax + 2012-10-17T15:46:40Z + GO:0044236 + GO:0044710 + MIPS_funcat:01 + Wikipedia:Metabolism + metabolism + metabolic process resulting in cell growth + metabolism resulting in cell growth + multicellular organism metabolic process + biological_process + single-organism metabolic process + GO:0008152 + + + + + + Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions. + metabolic process + + + + + The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation. + GOC:go_curators + ISBN:0198547684 + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GO:0044252 + down regulation of metabolic process + down-regulation of metabolic process + downregulation of metabolic process + negative regulation of metabolism + negative regulation of organismal metabolism + inhibition of metabolic process + inhibition of organismal metabolic process + negative regulation of multicellular organismal metabolic process + biological_process + GO:0009892 + negative regulation of metabolic process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GO:0044253 + positive regulation of metabolism + up regulation of metabolic process + up-regulation of metabolic process + upregulation of metabolic process + activation of metabolic process + positive regulation of multicellular organismal metabolic process + positive regulation of organismal metabolism + stimulation of metabolic process + stimulation of organismal metabolic process + up-regulation of organismal metabolic process + biological_process + GO:0009893 + positive regulation of metabolic process + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of signal transduction. + GO:0035466 + biological_process + regulation of signaling pathway + regulation of signalling pathway + GO:0009966 + regulation of signal transduction + + + + + Any process that modulates the frequency, rate or extent of signal transduction. + GOC:sm + + + + + regulation of signalling pathway + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of signal transduction. + GO:0035468 + up regulation of signal transduction + up-regulation of signal transduction + upregulation of signal transduction + activation of signal transduction + stimulation of signal transduction + biological_process + positive regulation of signaling pathway + positive regulation of signalling pathway + GO:0009967 + positive regulation of signal transduction + + + + + Any process that activates or increases the frequency, rate or extent of signal transduction. + GOC:sm + + + + + positive regulation of signalling pathway + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction. + GO:0035467 + down regulation of signal transduction + down-regulation of signal transduction + downregulation of signal transduction + inhibition of signal transduction + biological_process + negative regulation of signaling pathway + negative regulation of signalling pathway + GO:0009968 + negative regulation of signal transduction + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction. + GOC:sm + + + + + negative regulation of signalling pathway + GOC:mah + + + + + + + + + Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + janelomax + 2012-12-11T16:56:55Z + GO:0008151 + GO:0044763 + GO:0050875 + cell physiology + cellular physiological process + cell growth and/or maintenance + biological_process + single-organism cellular process + GO:0009987 + + cellular process + + + + + Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GOC:go_curators + GOC:isa_complete + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + biological_process + GO:0010562 + positive regulation of phosphorus metabolic process + + + + + Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + GOC:dph + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + biological_process + GO:0010563 + negative regulation of phosphorus metabolic process + + + + + Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + GOC:dph + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + biological_process + GO:0010646 + regulation of cell communication + + + + + Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + GOC:dph + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + biological_process + GO:0010647 + positive regulation of cell communication + + + + + Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + GOC:dph + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + biological_process + GO:0010648 + negative regulation of cell communication + + + + + Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. + GOC:dph + GOC:tb + + + + + + + + + A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. + Wikipedia:Biological_membrane + cellular_component + GO:0016020 + + + + + + + + + membrane + + + + + A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. + GOC:dos + GOC:mah + ISBN:0815316194 + + + + + + + + + + + + + + + Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + Reactome:R-HSA-6788855 + Reactome:R-HSA-6788867 + phosphokinase activity + molecular_function + GO:0016301 + + + + + + Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term. + kinase activity + + + + + Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + ISBN:0198506732 + + + + + Reactome:R-HSA-6788855 + FN3KRP phosphorylates PsiAm, RibAm + + + + + Reactome:R-HSA-6788867 + FN3K phosphorylates ketosamines + + + + + + + + + The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. + Wikipedia:Phosphorylation + biological_process + GO:0016310 + + + phosphorylation + + + + + The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. + ISBN:0198506732 + + + + + + + + + Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. + EC:2 + Reactome:R-HSA-1483089 + Reactome:R-HSA-1483186 + Reactome:R-HSA-5668414 + Reactome:R-HSA-6787403 + Reactome:R-HSA-8868783 + molecular_function + GO:0016740 + + + + + + + + + transferase activity + + + + + Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. + ISBN:0198506732 + + + + + Reactome:R-HSA-1483089 + PE is converted to PS by PTDSS2 + + + + + Reactome:R-HSA-1483186 + PC is converted to PS by PTDSS1 + + + + + Reactome:R-HSA-5668414 + TRAF2 ubiquitinates cIAP1,2 in cIAP1,2:TRAF1:TRAF2:TRAF3:NIK + + + + + Reactome:R-HSA-6787403 + GTPBP3 and MTO1 transform uridine-34 yielding 5-taurinomethyluridine-34 in tRNA + + + + + Reactome:R-HSA-8868783 + TSR3 transfers aminocarboxypropyl group from S-adenosylmethionine to N(1)-methylpseudouridine-1248 of 18SE rRNA yielding N(1)-methyl-N(3)-aminocarboxypropylpseudouridine-1248 + + + + + + + + + Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). + EC:2.7 + molecular_function + GO:0016772 + + Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides. + transferase activity, transferring phosphorus-containing groups + + + + + Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). + GOC:jl + ISBN:0198506732 + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + regulation of phosphate metabolism + biological_process + GO:0019220 + regulation of phosphate metabolic process + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GO:0044246 + regulation of metabolism + regulation of multicellular organismal metabolic process + regulation of organismal metabolic process + biological_process + GO:0019222 + + regulation of metabolic process + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. + GOC:go_curators + + + + + regulation of organismal metabolic process + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a signaling process. + 2010-02-16T09:30:50Z + biological_process + regulation of signaling process + regulation of signalling process + GO:0023051 + regulation of signaling + + + + + Any process that modulates the frequency, rate or extent of a signaling process. + GOC:mtg_signal + + + + + regulation of signaling process + GOC:bf + + + + + regulation of signalling process + GOC:mah + + + + + + + + + The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered. + janelomax + 2010-02-16T09:30:50Z + GO:0023046 + GO:0044700 + biological signaling + signaling process + signalling + biological_process + signalling process + single organism signaling + GO:0023052 + + + + + + Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change. + signaling + + + + + The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered. + GOC:mtg_signal + GOC:mtg_signaling_feb11 + GOC:signaling + + + + + signalling process + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates, maintains or increases the frequency, rate or extent of a signaling process. + 2010-02-16T09:30:50Z + positive regulation of signalling process + biological_process + positive regulation of signaling process + GO:0023056 + positive regulation of signaling + + + + + Any process that activates, maintains or increases the frequency, rate or extent of a signaling process. + GOC:mtg_signal + + + + + positive regulation of signalling process + GOC:mah + + + + + positive regulation of signaling process + GOC:bf + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process. + 2010-02-16T09:30:50Z + biological_process + negative regulation of signaling process + negative regulation of signalling process + GO:0023057 + negative regulation of signaling + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process. + GOC:mtg_signal + + + + + negative regulation of signaling process + GOC:bf + + + + + negative regulation of signalling process + GOC:mah + + + + + + + + + The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed. + MIPS_funcat:18.02.07 + molecular_function + GO:0030545 + receptor regulator activity + + + + + The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed. + GOC:ceb + + + + + + + + + The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased. + receptor activator activity + molecular_function + GO:0030546 + signaling receptor activator activity + + + + + The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased. + GOC:ceb + + + + + + + + + A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules. + intraflagellar transport complex + intraflagellar transport particle + cellular_component + IFT complex + GO:0030990 + + Note that we deem cilia and microtubule-based flagella to be equivalent. + intraciliary transport particle + + + + + A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules. + GOC:cilia + GOC:kmv + PMID:14570576 + PMID:22118932 + PMID:23945166 + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + regulation of cellular metabolism + biological_process + GO:0031323 + regulation of cellular metabolic process + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + down regulation of cellular metabolic process + down-regulation of cellular metabolic process + downregulation of cellular metabolic process + negative regulation of cellular metabolism + inhibition of cellular metabolic process + biological_process + GO:0031324 + negative regulation of cellular metabolic process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + positive regulation of cellular metabolism + up regulation of cellular metabolic process + up-regulation of cellular metabolic process + upregulation of cellular metabolic process + activation of cellular metabolic process + stimulation of cellular metabolic process + biological_process + GO:0031325 + positive regulation of cellular metabolic process + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. + GOC:mah + - + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding. + down regulation of protein binding + down-regulation of protein binding + downregulation of protein binding + inhibition of protein binding + biological_process + GO:0032091 + negative regulation of protein binding + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding. + GOC:mah + - + - - cellular_component + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of protein binding. + up regulation of protein binding + up-regulation of protein binding + upregulation of protein binding + activation of protein binding + stimulation of protein binding + biological_process + GO:0032092 + positive regulation of protein binding + + + + Any process that activates or increases the frequency, rate or extent of protein binding. + GOC:mah + - + - + - cell + A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together. + GO:0043234 + macromolecular complex + macromolecule complex + protein containing complex + protein complex + protein-protein complex + cellular_component + GO:0032991 + + + + + + A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole. + protein-containing complex + + + + A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together. + GOC:dos + GOC:mah + - + - - - nucleus + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + down regulation of kinase activity + down-regulation of kinase activity + downregulation of kinase activity + inhibition of kinase activity + kinase inhibitor + biological_process + GO:0033673 + negative regulation of kinase activity + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + GOC:mah + - + - - - - cilium + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + up regulation of kinase activity + up-regulation of kinase activity + upregulation of kinase activity + kinase activator + stimulation of kinase activity + biological_process + GO:0033674 + positive regulation of kinase activity + + + + + Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. + rfoulger + 2010-05-14T01:14:37Z + GO:0007242 + GO:0007243 + GO:0023013 + GO:0023034 + intracellular signaling chain + intracellular protein kinase cascade + intracellular signal transduction pathway + protein kinase cascade + signal transmission via intracellular cascade + biological_process + intracellular signaling cascade + intracellular signaling pathway + signal transduction via intracellular signaling cascade + GO:0035556 + intracellular signal transduction + + + + + The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. + GOC:bf + GOC:jl + GOC:signaling + ISBN:3527303782 + + + + + intracellular signaling chain + ISBN:3527303782 + + + + + intracellular protein kinase cascade + GOC:signaling + + + + + protein kinase cascade + GOC:signaling + + + + + intracellular signaling cascade + GOC:signaling + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule. + biological_process + GO:0042325 + regulation of phosphorylation + + + + + Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule. + GOC:jl + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule. + down regulation of phosphorylation + down-regulation of phosphorylation + downregulation of phosphorylation + inhibition of phosphorylation + biological_process + GO:0042326 + negative regulation of phosphorylation + + + + + Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule. + GOC:jl + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule. + up regulation of phosphorylation + up-regulation of phosphorylation + upregulation of phosphorylation + activation of phosphorylation + stimulation of phosphorylation + biological_process + GO:0042327 + positive regulation of phosphorylation + + + + Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule. + GOC:jl + - - cell projection + + A prolongation or process extending from a cell, e.g. a flagellum or axon. + cell process + cellular process + cellular projection + cellular_component + GO:0042995 + + + + + cell projection + + + + + A prolongation or process extending from a cell, e.g. a flagellum or axon. + GOC:jl + http://www.cogsci.princeton.edu/~wn/ + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the activity of an enzyme. + GO:0048554 + MIPS_funcat:18.02.01.01 + positive regulation of enzyme activity + up regulation of enzyme activity + up-regulation of enzyme activity + upregulation of enzyme activity + activation of enzyme activity + activation of metalloenzyme activity + positive regulation of metalloenzyme activity + stimulation of enzyme activity + stimulation of metalloenzyme activity + up regulation of metalloenzyme activity + up-regulation of metalloenzyme activity + upregulation of metalloenzyme activity + biological_process + GO:0043085 + + positive regulation of catalytic activity + + + + + Any process that activates or increases the activity of an enzyme. + GOC:ebc + GOC:jl + GOC:tb + GOC:vw + + + + + positive regulation of enzyme activity + GOC:tb + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops or reduces the activity of an enzyme. + GO:0048553 + down regulation of enzyme activity + down-regulation of enzyme activity + down-regulation of metalloenzyme activity + downregulation of enzyme activity + negative regulation of enzyme activity + down regulation of metalloenzyme activity + downregulation of metalloenzyme activity + inhibition of enzyme activity + inhibition of metalloenzyme activity + negative regulation of metalloenzyme activity + biological_process + GO:0043086 + negative regulation of catalytic activity + + + + Any process that stops or reduces the activity of an enzyme. + GOC:ebc + GOC:jl + GOC:tb + GOC:vw + + + + + negative regulation of enzyme activity + GOC:tb + - - organelle + + Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane. + NIF_Subcellular:sao1539965131 + Wikipedia:Organelle + cellular_component + GO:0043226 + + + + organelle + + + + Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane. + GOC:go_curators + @@ -79,18 +2699,55 @@ - membrane-bounded organelle + Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. + NIF_Subcellular:sao414196390 + membrane-enclosed organelle + cellular_component + GO:0043227 + membrane-bounded organelle + + + + Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. + GOC:go_curators + + + + + + + + + + + + - - intracellular organelle + + + + + + + Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. + cellular_component + GO:0043229 + + intracellular organelle + + + + Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. + GOC:go_curators + @@ -99,38 +2756,2230 @@ - intracellular membrane-bounded organelle + Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. + intracellular membrane-enclosed organelle + cellular_component + GO:0043231 + + intracellular membrane-bounded organelle + + + + + Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of protein binding. + biological_process + GO:0043393 + regulation of protein binding + + + + + Any process that modulates the frequency, rate or extent of protein binding. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + biological_process + GO:0043549 + regulation of kinase activity + + + + + Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. + GOC:bf + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + jane + 2009-04-21T04:07:27Z + biological_process + GO:0044092 + negative regulation of molecular function + + + + + Any process that stops or reduces the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + GO:jl + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + jane + 2009-04-21T04:11:06Z + biological_process + GO:0044093 + positive regulation of molecular function + + + + + Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + GO:jl + + + + + + + + + + The chemical reactions and pathways by which individual cells transform chemical substances. + cellular metabolism + biological_process + intermediary metabolism + GO:0044237 + cellular metabolic process + + + + The chemical reactions and pathways by which individual cells transform chemical substances. + GOC:go_curators + + + + + intermediary metabolism + GOC:mah + - - intracellular part + OBSOLETE. Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. + GO:0005622 + cellular_component + GO:0044424 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + obsolete intracellular part + true + + + + OBSOLETE. Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. + GOC:jl + + OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms. + CL:0000000 + NIF_Subcellular:sao628508602 + cellular subcomponent + cellular_component + protoplast + GO:0044464 + + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + obsolete cell part + true + + + + + OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms. + GOC:jl + + + + + cellular subcomponent + NIF_Subcellular:sao628508602 + + + + + protoplast + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + down regulation of phosphate metabolic process + down-regulation of phosphate metabolic process + downregulation of phosphate metabolic process + negative regulation of phosphate metabolism + inhibition of phosphate metabolic process + biological_process + GO:0045936 + negative regulation of phosphate metabolic process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + positive regulation of phosphate metabolism + up regulation of phosphate metabolic process + up-regulation of phosphate metabolic process + upregulation of phosphate metabolic process + activation of phosphate metabolic process + stimulation of phosphate metabolic process + biological_process + GO:0045937 + positive regulation of phosphate metabolic process + + + + + Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates. + GOC:go_curators + + + + + + + + + + + + + + + + The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands). + midori + 2010-09-13T04:51:59Z + GO:0071884 + receptor agonist activity + signaling molecule + signaling receptor ligand activity + vitamin D receptor activator activity + molecular_function + GO:0048018 + + Definition discussed in https://github.com/geneontology/go-ontology/issues/14220 + receptor ligand activity + + + + + The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands). + GOC:kv + GOC:molecular_function_refactoring + GOC:pdt + + + + + receptor agonist activity + GOC:molecular_function_refactoring + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GO:0043119 + positive regulation of physiological process + up regulation of biological process + up-regulation of biological process + upregulation of biological process + activation of biological process + stimulation of biological process + biological_process + GO:0048518 + + positive regulation of biological process + + + + + Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GO:0043118 + down regulation of biological process + down-regulation of biological process + downregulation of biological process + negative regulation of physiological process + inhibition of biological process + biological_process + GO:0048519 + + negative regulation of biological process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GO:0051242 + positive regulation of cellular physiological process + up regulation of cellular process + up-regulation of cellular process + upregulation of cellular process + activation of cellular process + stimulation of cellular process + biological_process + GO:0048522 + positive regulation of cellular process + + + + + Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GO:0051243 + down regulation of cellular process + down-regulation of cellular process + downregulation of cellular process + negative regulation of cellular physiological process + inhibition of cellular process + biological_process + GO:0048523 + negative regulation of cellular process + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + biological_process + GO:0048583 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + regulation of response to stimulus + + + + + Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + up regulation of response to stimulus + up-regulation of response to stimulus + upregulation of response to stimulus + activation of response to stimulus + stimulation of response to stimulus + biological_process + GO:0048584 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + positive regulation of response to stimulus + + + + + Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + down regulation of response to stimulus + down-regulation of response to stimulus + downregulation of response to stimulus + inhibition of response to stimulus + biological_process + GO:0048585 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + negative regulation of response to stimulus + + + + + Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. + GOC:jid + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GO:0050791 + regulation of physiological process + biological_process + GO:0050789 + + + + + regulation of biological process + + + + + Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. + GOC:ai + GOC:go_curators + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the activity of an enzyme. + GO:0048552 + MIPS_funcat:18.02.01 + regulation of enzyme activity + regulation of metalloenzyme activity + biological_process + GO:0050790 + + regulation of catalytic activity + + + + + Any process that modulates the activity of an enzyme. + GOC:ai + GOC:ebc + GOC:vw + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GO:0051244 + regulation of cellular physiological process + biological_process + GO:0050794 + regulation of cellular process + + + + + Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. + GOC:go_curators + + + + + + + + + Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. + GO:0051869 + MIPS_funcat:34.11 + physiological response to stimulus + biological_process + GO:0050896 + + + + + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + response to stimulus + + + + + Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism. + GOC:ai + GOC:bf + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + biological_process + GO:0051098 + regulation of binding + + + + + Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + up regulation of binding + up-regulation of binding + upregulation of binding + activation of binding + stimulation of binding + biological_process + GO:0051099 + positive regulation of binding + + + + + Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + down regulation of binding + down-regulation of binding + downregulation of binding + inhibition of binding + biological_process + GO:0051100 + negative regulation of binding + + + + + Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + regulation of phosphorus metabolism + biological_process + GO:0051174 + regulation of phosphorus metabolic process + + + + + Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. + transferase regulator + biological_process + GO:0051338 + + This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. + regulation of transferase activity + + + + + Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. + EC:2.-.-.- + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. + transferase activator + up regulation of transferase activity + up-regulation of transferase activity + upregulation of transferase activity + activation of transferase activity + stimulation of transferase activity + biological_process + GO:0051347 + + This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. + positive regulation of transferase activity + + + + + Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. + GOC:ai + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. + down regulation of transferase activity + down-regulation of transferase activity + downregulation of transferase activity + transferase inhibitor + inhibition of transferase activity + biological_process + GO:0051348 + + This term is useful for grouping, but is too general for manual annotation. Please use a child term instead. + negative regulation of transferase activity + + + + + Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. + GOC:ai + + + + + + + + + + Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell. + biological_process + GO:0051716 + + Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. + cellular response to stimulus + + + + + Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell. + GOC:bf + GOC:jl + + + + + + + + + Any process that modulates a measurable attribute of any biological process, quality or function. + regulation + biological_process + GO:0065007 + + + biological regulation + + + + + Any process that modulates a measurable attribute of any biological process, quality or function. + GOC:dph + GOC:isa_complete + GOC:mah + GOC:pr + GOC:vw + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + regulation of a molecular function + biological_process + GO:0065009 + + + + regulation of molecular function + + + + + Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. + GOC:isa_complete + + + + + + + + + The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures. + midori + 2010-10-04T01:51:47Z + cellular_component + GO:0071944 + + cell periphery + + + + + The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures. + GOC:mah + + + + + + + + + + + + + + + + + + + + + + + + + + A membrane that is a (regional) part of the plasma membrane. + davidos + 2014-03-06T11:55:32Z + region of plasma membrane + cellular_component + GO:0098590 + + Note that this term should not be used for direct manual annotation as it should always be possible to choose a more specific subclass. + plasma membrane region + + + + + A membrane that is a (regional) part of the plasma membrane. + GOC:dos + + + + + + + + + + + + + + + A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators. + molecular_function + GO:0098772 + + molecular function regulator + + + + + A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators. + GOC:dos + GOC:pt + + + + + + + + + + + + + + + + + + + + + + + + + + Any protein complex that is part of a membrane. + cellular_component + GO:0098796 + + membrane protein complex + + + + + Any protein complex that is part of a membrane. + GOC:dos + + + + + + + + + + + + + + + + + + + + + + + + + + Any protein complex that is part of the plasma membrane. + cellular_component + GO:0098797 + plasma membrane protein complex + + + + + Any protein complex that is part of the plasma membrane. + GOC:dos + + + + + + + - cell part + A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. + kmv + 2019-08-12T18:01:37Z + cellular_component + GO:0110165 + cellular anatomical entity + + + + A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex. + GOC:kmv + + + + + + + + + + + + - plasma membrane bounded cell projection + + + + + + + A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon. + kchris + 2017-03-21T17:26:07Z + cellular_component + GO:0120025 + plasma membrane bounded cell projection + + + + + A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon. + GOC:krc + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor. + bf + 2012-02-22T11:40:53Z + regulation of receptor ligand + biological_process + GO:1900120 + regulation of receptor binding + + + + + Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor. + GOC:TermGenie + GOC:signaling + + + + + regulation of receptor ligand + GOC:TermGenie + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor. + bf + 2012-02-22T11:40:57Z + down regulation of receptor binding + down-regulation of receptor binding + downregulation of receptor binding + inhibition of receptor binding + inhibition of receptor ligand + biological_process + down regulation of receptor-associated protein activity + GO:1900121 + negative regulation of receptor binding + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor. + GOC:TermGenie + GOC:signaling + + + + + down regulation of receptor binding + GOC:TermGenie + + + + + down-regulation of receptor binding + GOC:TermGenie + + + + + downregulation of receptor binding + GOC:TermGenie + + + + + inhibition of receptor binding + GOC:TermGenie + + + + + inhibition of receptor ligand + GOC:TermGenie + + + + + down regulation of receptor-associated protein activity + GOC:TermGenie + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor. + bf + 2012-02-22T11:41:00Z + up regulation of receptor binding + upregulation of receptor binding + activation of receptor binding + biological_process + GO:1900122 + positive regulation of receptor binding + + + + + Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor. + GOC:TermGenie + GOC:signaling + + + + + up regulation of receptor binding + GOC:TermGenie + + + + + upregulation of receptor binding + GOC:TermGenie + + + + + activation of receptor binding + GOC:TermGenie + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of intracellular signal transduction. + bf + 2013-12-02T11:32:52Z + GO:0010627 + regulation of intracellular signaling cascade + regulation of intracellular signaling chain + regulation of intracellular protein kinase cascade + regulation of intracellular signal transduction pathway + regulation of signal transmission via intracellular cascade + biological_process + regulation of intracellular signaling pathway + regulation of signal transduction via intracellular signaling cascade + GO:1902531 + regulation of intracellular signal transduction + + + + + Any process that modulates the frequency, rate or extent of intracellular signal transduction. + GOC:TermGenie + GOC:dph + GOC:signaling + GOC:tb + + + + + regulation of intracellular signaling cascade + GOC:TermGenie + + + + + regulation of intracellular signaling chain + GOC:TermGenie + + + + + regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + regulation of intracellular signaling pathway + GOC:TermGenie + + + + + regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of intracellular signal transduction. + bf + 2013-12-02T11:33:01Z + GO:0010741 + down regulation of intracellular signal transduction + down regulation of intracellular signaling chain + down-regulation of intracellular signal transduction + down-regulation of intracellular signaling chain + downregulation of intracellular signal transduction + downregulation of intracellular signaling chain + negative regulation of intracellular protein kinase cascade + negative regulation of intracellular signaling cascade + negative regulation of intracellular signaling chain + down regulation of intracellular signal transduction pathway + down regulation of intracellular signaling cascade + down regulation of signal transmission via intracellular cascade + down-regulation of intracellular signal transduction pathway + downregulation of intracellular signal transduction pathway + downregulation of intracellular signaling cascade + downregulation of signal transmission via intracellular cascade + inhibition of intracellular signal transduction + inhibition of intracellular signal transduction pathway + inhibition of intracellular signaling cascade + inhibition of intracellular signaling chain + inhibition of signal transmission via intracellular cascade + negative regulation of intracellular signal transduction pathway + negative regulation of signal transmission via intracellular cascade + biological_process + down regulation of intracellular signaling pathway + down regulation of signal transduction via intracellular signaling cascade + down-regulation of intracellular signaling cascade + down-regulation of intracellular signaling pathway + down-regulation of signal transduction via intracellular signaling cascade + down-regulation of signal transmission via intracellular cascade + downregulation of intracellular signaling pathway + downregulation of signal transduction via intracellular signaling cascade + inhibition of intracellular signaling pathway + inhibition of signal transduction via intracellular signaling cascade + negative regulation of intracellular signaling pathway + negative regulation of signal transduction via intracellular signaling cascade + GO:1902532 + negative regulation of intracellular signal transduction + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of intracellular signal transduction. + GOC:TermGenie + GOC:dph + GOC:signaling + GOC:tb + + + + + down regulation of intracellular signal transduction + GOC:TermGenie + + + + + down regulation of intracellular signaling chain + GOC:TermGenie + + + + + down-regulation of intracellular signal transduction + GOC:TermGenie + + + + + down-regulation of intracellular signaling chain + GOC:TermGenie + + + + + downregulation of intracellular signal transduction + GOC:TermGenie + + + + + downregulation of intracellular signaling chain + GOC:TermGenie + + + + + negative regulation of intracellular signaling cascade + GOC:TermGenie + + + + + negative regulation of intracellular signaling chain + GOC:TermGenie + + + + + down regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + down regulation of intracellular signaling cascade + GOC:TermGenie + + + + + down regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + down-regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + downregulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + downregulation of intracellular signaling cascade + GOC:TermGenie + + + + + downregulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + inhibition of intracellular signal transduction + GOC:TermGenie + + + + + inhibition of intracellular signal transduction pathway + GOC:TermGenie + + + + + inhibition of intracellular signaling cascade + GOC:TermGenie + + + + + inhibition of intracellular signaling chain + GOC:TermGenie + + + + + inhibition of signal transmission via intracellular cascade + GOC:TermGenie + + + + + negative regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + negative regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + down regulation of intracellular signaling pathway + GOC:TermGenie + + + + + down regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + down-regulation of intracellular signaling cascade + GOC:TermGenie + + + + + down-regulation of intracellular signaling pathway + GOC:TermGenie + + + + + down-regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + down-regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + downregulation of intracellular signaling pathway + GOC:TermGenie + + + + + downregulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + inhibition of intracellular signaling pathway + GOC:TermGenie + + + + + inhibition of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + negative regulation of intracellular signaling pathway + GOC:TermGenie + + + + + negative regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of intracellular signal transduction. + bf + 2013-12-02T11:33:10Z + GO:0010740 + positive regulation of intracellular signaling chain + up regulation of intracellular signal transduction + up regulation of intracellular signaling chain + up-regulation of intracellular signal transduction + up-regulation of intracellular signaling chain + upregulation of intracellular signal transduction + upregulation of intracellular signaling chain + activation of intracellular signal transduction + activation of intracellular signal transduction pathway + activation of intracellular signaling cascade + activation of intracellular signaling chain + activation of signal transmission via intracellular cascade + positive regulation of intracellular protein kinase cascade + positive regulation of intracellular signal transduction pathway + positive regulation of signal transmission via intracellular cascade + up regulation of intracellular signal transduction pathway + up regulation of signal transmission via intracellular cascade + up-regulation of intracellular signal transduction pathway + up-regulation of signal transmission via intracellular cascade + upregulation of intracellular signal transduction pathway + upregulation of signal transmission via intracellular cascade + biological_process + activation of intracellular signaling pathway + activation of signal transduction via intracellular signaling cascade + positive regulation of intracellular signaling cascade + positive regulation of intracellular signaling pathway + positive regulation of signal transduction via intracellular signaling cascade + up regulation of intracellular signaling cascade + up regulation of intracellular signaling pathway + up regulation of signal transduction via intracellular signaling cascade + up-regulation of intracellular signaling cascade + up-regulation of intracellular signaling pathway + up-regulation of signal transduction via intracellular signaling cascade + upregulation of intracellular signaling cascade + upregulation of intracellular signaling pathway + upregulation of signal transduction via intracellular signaling cascade + GO:1902533 + positive regulation of intracellular signal transduction + + + + Any process that activates or increases the frequency, rate or extent of intracellular signal transduction. + GOC:BHF + GOC:TermGenie + GOC:dph + GOC:signaling + GOC:tb + + + + + positive regulation of intracellular signaling chain + GOC:TermGenie + + + + + up regulation of intracellular signal transduction + GOC:TermGenie + + + + + up regulation of intracellular signaling chain + GOC:TermGenie + + + + + up-regulation of intracellular signal transduction + GOC:TermGenie + + + + + up-regulation of intracellular signaling chain + GOC:TermGenie + + + + + upregulation of intracellular signal transduction + GOC:TermGenie + + + + + upregulation of intracellular signaling chain + GOC:TermGenie + + + + + activation of intracellular signal transduction + GOC:TermGenie + + + + + activation of intracellular signal transduction pathway + GOC:TermGenie + + + + + activation of intracellular signaling cascade + GOC:TermGenie + + + + + activation of intracellular signaling chain + GOC:TermGenie + + + + + activation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + positive regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + positive regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + up regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + up regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + up-regulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + up-regulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + upregulation of intracellular signal transduction pathway + GOC:TermGenie + + + + + upregulation of signal transmission via intracellular cascade + GOC:TermGenie + + + + + activation of intracellular signaling pathway + GOC:TermGenie + + + + + activation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + positive regulation of intracellular signaling cascade + GOC:TermGenie + + + + + positive regulation of intracellular signaling pathway + GOC:TermGenie + + + + + positive regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + up regulation of intracellular signaling cascade + GOC:TermGenie + + + + + up regulation of intracellular signaling pathway + GOC:TermGenie + + + + + up regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + up-regulation of intracellular signaling cascade + GOC:TermGenie + + + + + up-regulation of intracellular signaling pathway + GOC:TermGenie + + + + + up-regulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + + + + + upregulation of intracellular signaling cascade + GOC:TermGenie + + + + + upregulation of intracellular signaling pathway + GOC:TermGenie + + + + + upregulation of signal transduction via intracellular signaling cascade + GOC:TermGenie + - + diff --git a/src/ontology/imports/go_terms.txt b/src/ontology/imports/go_terms.txt new file mode 100644 index 00000000..026f97e9 --- /dev/null +++ b/src/ontology/imports/go_terms.txt @@ -0,0 +1,2 @@ +GO:0008150 + diff --git a/src/ontology/imports/pco_import.json b/src/ontology/imports/pco_import.json index 542823c2..fa2b8bde 100644 --- a/src/ontology/imports/pco_import.json +++ b/src/ontology/imports/pco_import.json @@ -1,144 +1,5956 @@ { "graphs" : [ { "nodes" : [ { + "id" : "http://purl.obolibrary.org/obo/GO_0003674", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "molecular process" + } ] + }, + "type" : "CLASS", + "lbl" : "molecular_function" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_01000313", + "meta" : { + "definition" : { + "val" : "An anthropogenic environment is an environmental system which is the product of human activity.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "anthropogenic environment" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002297", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "results_in_formation_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GOC:mtg_berkeley_2013" + } ] + }, + "type" : "PROPERTY", + "lbl" : "results in formation of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002303", + "meta" : { + "definition" : { + "val" : "A quality of an object that has a value that is decreased compared to normal or average.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "decreased object quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001338", + "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in a population of multiple sexes.", + "xrefs" : [ "MGED:MGED" ] + } + }, + "type" : "CLASS", + "lbl" : "mixed sex" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002295", + "meta" : { + "definition" : { + "val" : "p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss).", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "results_in_developmental_progression_of" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Ontology_extensions" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "results in developmental progression of" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_2759", + "meta" : { + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "Eukaryotae", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "eukaryotes", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eucaryotae", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "eukaryotes", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eukarya", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "eucaryotes", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eucaryotae", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "eukaryotes", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eucarya", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eukaryotae", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "eukaryotes", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eucarya", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eukarya", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "eucaryotes", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Eukaryota" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002604", + "meta" : { + "definition" : { + "val" : "x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x).", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'anterior end of organism' is-opposite-of 'posterior end of organism'" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'increase in temperature' is-opposite-of 'decrease in temperature'" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is opposite of" + }, { + "id" : "http://purl.obolibrary.org/obo/CL_0000000", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/cl.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "cell" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002301", + "meta" : { + "definition" : { + "val" : "A quality that has a value that is decreased compared to normal or average.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "decreased quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000001", + "meta" : { + "definition" : { + "val" : "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "trait", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "quality (PATO)" + } ] + }, + "type" : "CLASS", + "lbl" : "quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000004", + "meta" : { + "definition" : { + "val" : "A quality that inheres in a community.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "These may not belong under BFO:quality. May be better to call them community characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Includes qualities like diversity, species richness, stability, resilience, community structure, number of trophic levels. A community quality may depend on the qualities of individual organism in the community, but cannot be measured or described for a single individual." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "CLASS", + "lbl" : "quality of an ecological community" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000003", + "meta" : { + "definition" : { + "val" : "A quality that inheres in a biological population.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Includes qualities like population size, population growth rate, carrying capacity, immigration rate, emigration rate, fecundity, and death rate. A population quality may depend on the qualities of individual organisms in the population, but cannot be measured or described for a single organism. This term may be replaced by a PATO term." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "See Chris's comments on population qualities at: http://code.google.com/p/popcomm-ontology/issues/detail?id=4. These may not belong under BFO:quality. May be better to call them population characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2." + } ] + }, + "type" : "CLASS", + "lbl" : "quality of a population" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016740", + "type" : "CLASS", + "lbl" : "transferase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002608", + "meta" : { + "definition" : { + "val" : "Inverse of 'causal agent in'", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has causal agent" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000078", + "meta" : { + "definition" : { + "val" : "The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "curation status specification" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "OBI_0000266" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Bill Bug" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + } ] + }, + "type" : "CLASS", + "lbl" : "curation status specification" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002609", + "meta" : { + "definition" : { + "val" : "A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + } ] + }, + "type" : "PROPERTY", + "lbl" : "related via dependence to" + }, { + "id" : "http://purl.obolibrary.org/obo/PO_0025131", + "meta" : { + "definition" : { + "val" : "An anatomical entity that is or was part of a plant.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "植物 解剖学（形態）的実体 (Japanese, exact)", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "entidad anatómica vegetal (Spanish, exact)", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "plant anatomical entity" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_7776", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "jawed vertebrates", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "Gnathostomata", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Gnathostomata " + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000014", + "meta" : { + "definition" : { + "val" : "A composite chromatic quality composed of hue, saturation and intensity parts.", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "relative color", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "colour", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "color" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", + "type" : "PROPERTY", + "lbl" : "has_related_synonym" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000017", + "meta" : { + "definition" : { + "val" : "A collection of organisms that has as parts every organism of given species and no organisms of any other species.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000120" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is neutral with respect to which organisms are included in a species. Membership will depend on the species concept and the taxonomic assertions used to define the species. These criteria must be specified by the user." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "At the moment there is no way to specify in an OWL axiom that the collection includes every individual of a species. This should be added, if possible." + } ] + }, + "type" : "CLASS", + "lbl" : "species as a collection of organisms" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000018", + "meta" : { + "definition" : { + "val" : "A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "collection of organisms of the same species" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000120" + } ] + }, + "type" : "CLASS", + "lbl" : "single-species collection of organisms" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000409", + "meta" : { + "definition" : { + "val" : "A denotator type indicates how a term should be interpreted from an ontological perspective.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are \"natural kinds\" and the latter arbitrary collections of entities." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Barry Smith, Werner Ceusters" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Alan Ruttenberg" + } ] + }, + "type" : "CLASS", + "lbl" : "denotator type" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_314146", + "type" : "CLASS", + "lbl" : "Euarchontoglires" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0003001", + "meta" : { + "definition" : { + "val" : "a produced_by b iff some process that occurs_in b has_output a.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" + } ] + }, + "type" : "PROPERTY", + "lbl" : "produced by" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001236", + "meta" : { + "definition" : { + "val" : "A quality which inheres in an process.", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "relational quality of occurrent", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quality of process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quality of occurrent", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quality of a process", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "process quality" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0003000", + "meta" : { + "definition" : { + "val" : "a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "produces" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_00010483", + "meta" : { + "definition" : { + "val" : "A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system.", + "xrefs" : [ "DOI:10.1186/2041-1480-4-43", "MA:ma", "ORCID:0000-0002-4366-3088", "URL:http://ontology.buffalo.edu/smith/articles/niches.html" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "portion of environmental material", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "environmental material" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000141", + "type" : "CLASS", + "lbl" : "structure" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_89593", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "Craniata", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Craniata " + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_33511", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "deuterostomes", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Deuterostomia" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000412", + "meta" : { + "definition" : { + "val" : "For external terms/classes, the ontology from which the term was imported", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "imported from" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Melanie Courtot" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" + } ] + }, + "type" : "PROPERTY", + "lbl" : "imported from" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000410", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Hard to give a definition for. Intuitively a \"natural kind\" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Alan Ruttenberg" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "universal" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_8287", + "type" : "CLASS", + "lbl" : "Sarcopterygii" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0100001", + "meta" : { + "definition" : { + "val" : "Use on obsolete terms, relating the term to another term that can be used as a substitute", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Person:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "term replaced by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Person:Alan Ruttenberg" + } ] + }, + "type" : "PROPERTY", + "lbl" : "term replaced by" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000000", + "meta" : { + "definition" : { + "val" : "A material entity that consists of two or more organisms, viruses, or viroids.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Examples include: population, community, species (meaning the collection of organisms that makes up a species, not the taxonomic rank), and family." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "group of organism" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "May be of the same or different species." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "organism collection" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "CLASS", + "lbl" : "collection of organisms" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000080", + "meta" : { + "definition" : { + "val" : "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "quality_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A quality inheres in its bearer at all times for which the quality exists." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is quality of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this red color is a quality of this apple" + } ] + }, + "type" : "PROPERTY", + "lbl" : "quality of" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0004872", + "type" : "CLASS", + "lbl" : "receptor activity" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000002", + "meta" : { + "definition" : { + "val" : "A community of at least two different species, living in a particular area. 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The word community, as it often used to describe a group of humans living together, is a type of single-species collection of organisms, not an ecological community." + } ] + }, + "type" : "CLASS", + "lbl" : "ecological community" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000001", + "meta" : { + "definition" : { + "val" : "A collection of organisms, all of the same species, that live in the same place.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "ISBN:0878932739" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "This a general term that can include every organism of a species living in an area or any subset of them. 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The definitions should be standardized across OBO Foundry ontologies and only one term used." + } ] + }, + "type" : "CLASS", + "lbl" : "population of organisms" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002264", + "meta" : { + "definition" : { + "val" : "c acts upstream of or within p if c is enables 'p' and p' causally upstream of or within p", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ] + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of or within" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000086", + "meta" : { + "definition" : { + "val" : "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this apple has quality this red color" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." + } ] + }, + "type" : "PROPERTY", + "lbl" : "has quality" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002263", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c enables 'p' and p' causally upstream of p", + "xrefs" : [ ] + } + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002019", + "meta" : { + "definition" : { + "val" : "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-07-19T17:30:36Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has ligand" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001241", + "meta" : { + "definition" : { + "val" : "A quality which inheres in a continuant.", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "monadic quality of an object", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quality of an object", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "monadic quality of continuant", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quality of a single physical entity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "monadic quality of a continuant", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quality of continuant", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "multiply inhering quality of a physical entity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quality of a continuant", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "physical object quality" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002015", + "meta" : { + "definition" : { + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:17Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has positive regulatory component activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002379", + "meta" : { + "definition" : { + "val" : "x spatially_coextensive_with y if and inly if x and y have the same location", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A lump of clay and a statue" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation is added for formal completeness. 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It is intended as a grouping for a diverse set of relations, all involving cause and effect." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causal relation between material entity and a process" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002353", + "meta" : { + "definition" : { + "val" : "inverse of has output", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "output of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002233", + "meta" : { + "definition" : { + "val" : "p has direct input c iff c is a participant in p, c is present at the start of p, and the state of c is modified during p.", + "xrefs" : [ ] + }, + "subsets" : [ 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"http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "pyrethroid -> growth" + } ] + }, + "type" : "PROPERTY", + "lbl" : "capable of regulating" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_9604", + "meta" : { + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "Pongidae", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "great apes", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Hominidae" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002597", + "meta" : { + "definition" : { + "val" : "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "capable of negatively regulating" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002234", + "meta" : { + "definition" : { + "val" : "p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "produces" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has output" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_9605", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "humans", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Homo" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_9606", + "meta" : { + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "humans", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "human", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "man", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Homo sapiens" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000056", + "meta" : { + "definition" : { + "val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this investigator participates in this investigation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this input material (or this output material) participates in this process" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "participates in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "participates_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this blood clot participates in this blood coagulation" + } ] + }, + "type" : "PROPERTY", + "lbl" : "participates in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002350", + "meta" : { + "definition" : { + "val" : "is member of is a mereological relation between a item and a collection.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "SIO" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is member of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "member part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "An organism that is a member of a population of organisms" + } ] + }, + "type" : "PROPERTY", + "lbl" : "member of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000053", + "meta" : { + "definition" : { + "val" : "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this apple is bearer of this red color" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "bearer_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "bearer of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this vase is bearer of this fragility" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is bearer of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "bearer of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002351", + "meta" : { + "definition" : { + "val" : "has member is a mereological relation between a collection and an item.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "SIO" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has member" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001018", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "contained_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "contained in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Containment is location not involving parthood, and arises only where some immaterial continuant is involved." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Intended meaning:\ndomain: material entity\nrange: spatial region or site (immaterial continuant)\n " + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):" + } ] + }, + "type" : "PROPERTY", + "lbl" : "contained in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001019", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "contains" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + } ] + }, + "type" : "PROPERTY", + "lbl" : "contains" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "type" : "PROPERTY", + "lbl" : "shorthand" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001015", + "meta" : { + "definition" : { + "val" : "a relation between two independent continuants, the location and the target, in which the target is entirely within the location", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my head is the location of my brain" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "location_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this cage is the location of this rat" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "is location of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "location of" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000028", + "meta" : { + "definition" : { + "val" : "A collection of organisms of the same species whose members are all either genealogically related to each other or have mated with each other.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Biological or social relations are covered by RO_0002437 (biotically interacts with), but that relations does provide an easy way to specify that two entities are interacting with each other (participating in the same interaction). Until that axiom is specified, the logical definition of this term is incomplete." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "These relations can include shared values, occupying the same spatial regkion. A community be be a single species collection of organsisms (as in a human community, which is also a type of population) or a or multi-species collection of organisms (as in an ecological community)." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000123" + } ] + }, + "type" : "CLASS", + "lbl" : "community" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000027", + "meta" : { + "definition" : { + "val" : "A collection of organisms of the same species that has as members only humans.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "human community" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "human population" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "CLASS", + "lbl" : "collection of humans" + }, { + "id" : "http://purl.obolibrary.org/obo/PCO_0000029", + "meta" : { + "definition" : { + "val" : "A collection of organisms that consists of two or more organisms from at least two species.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Need to add axiom to specify that it has at a mimum members of two different species, but not sure how to specify that. Can't say \"('has member' only ('member of' min 2 'species as a collection of organisms'))\"." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000123" + } ] + }, + "type" : "CLASS", + "lbl" : "multi-species collection of organisms" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#Subset", + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_314295", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "ape", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "apes", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Hominoidea" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002584", + "meta" : { + "definition" : { + "val" : "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has part structure that is capable of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002222", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "temporally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002464", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "helper property" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000117", + "meta" : { + "definition" : { + "val" : "A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "size" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002581", + "meta" : { + "definition" : { + "val" : "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL", + "xrefs" : [ ] + } + }, + "type" : "PROPERTY", + "lbl" : "is a defining property chain axiom" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002582", + "meta" : { + "definition" : { + "val" : "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. 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An editor note should indicate what is the URI of the new term to use." + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "term imported" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000229", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created." + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "term split" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_01000951", + "meta" : { + "definition" : { + "val" : "An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition.", + "xrefs" : [ "https://en.wikipedia.org/wiki/Anthropization", "https://en.wikipedia.org/wiki/Natural_environment" ] + } + }, + "type" : "CLASS", + "lbl" : "natural environment" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002331", + "meta" : { + "definition" : { + "val" : "c involved_in p if and only if c enables some process p', and p' is part of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "enables part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "actively involved in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002211", + "meta" : { + "definition" : { + "val" : "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Hill" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Regulation precludes parthood; the regulatory process may not be within the regulated process." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GO" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Tanya Berardini" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "regulates (processual)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "regulates" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000402", + "type" : "CLASS", + "lbl" : "branched" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002212", + "meta" : { + "definition" : { + "val" : "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "negatively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "negatively regulates" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002333", + "meta" : { + "definition" : { + "val" : "inverse of enables", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "enabled by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002450", + "meta" : { + "definition" : { + "val" : "Holds between molecules a and b if and only if a executes a process that directly activates a process executed by b.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "activates" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecularly increases activity of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002327", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is catalyzing" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is executing" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "catalyzes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "a particular instances of akt-2 enables some instance of protein kinase activity" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "enables" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002448", + "meta" : { + "definition" : { + "val" : "Holds between molecular entities a and b when the execution of a activates or inhibits the activity of b", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecularly controls" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002449", + "meta" : { + "definition" : { + "val" : "Holds between molecules a and b if and only if a executes a process that directly diminishes a process executed by b.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "inhibits" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecularly decreases activity of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002328", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This is a grouping relation that collects relations used for the purpose of connecting structure and function" + } ] + }, + "type" : "PROPERTY", + "lbl" : "functionally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002329", + "meta" : { + "definition" : { + "val" : "this relation holds between c and p when c is part of some c', and c' is capable of p.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "part of structure that is capable of" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000050", + "meta" : { + "definition" : { + "val" : "a core relation that holds between a part and its whole", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "is part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this day is part of this year (occurrent parthood)" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my brain is part of my body (continuant parthood, two material entities)" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." + } ] + }, + "type" : "PROPERTY", + "lbl" : "part of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002323", + "meta" : { + "definition" : { + "val" : "A mereological relationship or a topological relationship", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "mereotopologically related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002324", + "meta" : { + "definition" : { + "val" : "A relationship that holds between entities participating in some developmental process (GO:0032502)", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002566", + "meta" : { + "definition" : { + "val" : "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influences (material entity to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally influences" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002326", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We would like to say\n\nif and only if\n exists c', p'\n c part_of c' and c' capable_of p\n and\n c capable_of p' and p' part_of p\nthen\n c contributes_to p\n\nHowever, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. " + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to \"ribosome binding\". And all three are part_of an eIF2 complex" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to" + } ] + }, + "type" : "PROPERTY", + "lbl" : "contributes to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002447", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Axiomatization to GO to be added later" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." + } ] + }, + "type" : "PROPERTY", + "lbl" : "phosphorylates" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000116", + "meta" : { + "definition" : { + "val" : "An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "editor note" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "editor note" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_01001000", + "meta" : { + "definition" : { + "val" : "An environmental system which is determined by a living organism.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "host-associated environment", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "environmental system determined by an organism" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000117", + "meta" : { + "definition" : { + "val" : "Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "term editor" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115." + } ] + }, + "type" : "PROPERTY", + "lbl" : "term editor" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_01001002", + "meta" : { + "definition" : { + "val" : "An environmental system determined by an animal.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "Metazoan-associated environment", + "xrefs" : [ ] + }, { + "pred" : "hasBroadSynonym", + "val" : "animal environment", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "animal-associated environment" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000114", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Melanie Courtot" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "OBI_0000281" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has curation status" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Bill Bug" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has curation status" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000115", + "meta" : { + "definition" : { + "val" : "The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "2012-04-05: \nBarry Smith\n\nThe official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.\n\nCan you fix to something like:\n\nA statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.\n\nAlan Ruttenberg\n\nYour proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. \n\nOn the specifics of the proposed definition:\n\nWe don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. \n\nPersonally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. \n\nWe also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. " + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "definition" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + } ] + }, + "type" : "PROPERTY", + "lbl" : "definition" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000051", + "meta" : { + "definition" : { + "val" : "a core relation that holds between a whole and its part", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_part" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this year has part this day (occurrent parthood)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my body has part my brain (continuant parthood, two material entities)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has part" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has part" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000112", + "meta" : { + "definition" : { + "val" : "A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "example" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "example of usage" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001291", + "meta" : { + "definition" : { + "val" : "A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Electromagnetic_radiation" ] + } + }, + "type" : "CLASS", + "lbl" : "electromagnetic (EM) radiation quality" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000231", + "meta" : { + "definition" : { + "val" : "Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has obsolescence reason" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Melanie Courtot" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has obsolescence reason" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000111", + "meta" : { + "definition" : { + "val" : "The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "editor preferred term" + } ] + }, + "type" : "PROPERTY", + "lbl" : "editor preferred term" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000118", + "meta" : { + "definition" : { + "val" : "An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "alternative term" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + } ] + }, + "type" : "PROPERTY", + "lbl" : "alternative term" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000119", + "meta" : { + "definition" : { + "val" : "formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "definition source" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + } ] + }, + "type" : "PROPERTY", + "lbl" : "definition source" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002563", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "interaction relation helper property" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002564", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecular interaction relation helper property" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002559", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influenced by (material entity to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally influenced by" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000120", + "meta" : { + "definition" : { + "val" : "Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "metadata complete" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001900", + "meta" : { + "definition" : { + "val" : "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/ROAndTime" + } ] + }, + "type" : "PROPERTY", + "lbl" : "temporal interpretation" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_9443", + "meta" : { + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "primates", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "primate", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Primata", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Primates" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001901", + "meta" : { + "definition" : { + "val" : "\n\n## Elucidation\n\nThis is used when the statement/axiom is assumed to hold true 'eternally'\n\n## How to interpret (informal)\n\nFirst the \"atemporal\" FOL is derived from the OWL using the standard\ninterpretation. This axiom is temporalized by embedding the axiom\nwithin a for-all-times quantified sentence. The t argument is added to\nall instantiation predicates and predicates that use this relation.\n\n## Example\n\n Class: nucleus\n SubClassOf: part_of some cell\n\n forall t :\n forall n :\n instance_of(n,Nucleus,t)\n implies\n exists c :\n instance_of(c,Cell,t)\n part_of(n,c,t)\n\n## Notes\n\nThis interpretation is *not* the same as an at-all-times relation\n\n", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "axiom holds for all times" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002434", + "meta" : { + "definition" : { + "val" : "A relationship that holds between two entities in which the processes executed by the two entities are causally connected.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "in pairwise interaction with", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0914" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Considering relabeling as 'pairwise interacts with'" + } ] + }, + "type" : "PROPERTY", + "lbl" : "interacts with" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002314", + "meta" : { + "definition" : { + "val" : "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "inheres in part of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002436", + "meta" : { + "definition" : { + "val" : "An interaction relationship in which the two partners are molecular entities and are executing molecular processes that are directly causally connected.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/ECO_0000353" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0915" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "molecularly binds with" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "binds" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecularly interacts with" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_01001110", + "meta" : { + "definition" : { + "val" : "An environmental system which includes both living and non-living components.", + "xrefs" : [ "https://en.wikipedia.org/wiki/Ecosystem" ] + } + }, + "type" : "CLASS", + "lbl" : "ecosystem" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000125", + "meta" : { + "definition" : { + "val" : "All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "pending final vetting" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000123", + "meta" : { + "definition" : { + "val" : "Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "metadata incomplete" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000040", + "meta" : { + "definition" : { + "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "material entity" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000002", + "type" : "INDIVIDUAL", + "lbl" : "example to be eventually removed" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000124", + "meta" : { + "definition" : { + "val" : "Nothing done yet beyond assigning a unique class ID and proposing a preferred term.", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "uncurated" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000121", + "meta" : { + "definition" : { + "val" : "term created to ease viewing/sort terms for development purpose, and will not be included in a release", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "organizational term" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000122", + "meta" : { + "definition" : { + "val" : "Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking \"ready_for_release\" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed \"ready_for_release\" will also derived from a chain of ancestor classes that are also \"ready_for_release.\"", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "ready for release" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002430", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in negative regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_9526", + "type" : "CLASS", + "lbl" : "Catarrhini" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002431", + "meta" : { + "definition" : { + "val" : "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "involved in or reguates" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in or involved in regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002432", + "meta" : { + "definition" : { + "val" : "c executes activity in d if and only if c enables p and p occurs_in d", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes activity in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A protein that enables activity in a cytosol." + } ] + }, + "type" : "PROPERTY", + "lbl" : "enables activity in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002305", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "cjm" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of, negative effect" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002427", + "meta" : { + "definition" : { + "val" : "inverse of causally upstream of or within", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally downstream of or within" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0008150", + "meta" : { + "definition" : { + "val" : "Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.", + "xrefs" : [ "GOC:go_curators", "GOC:isa_complete" ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "single-organism process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "biological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "physiological process", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "single organism process", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "biological_process" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002428", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some 'p' and p' regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002429", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in positive regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002304", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "cjm" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of, positive effect" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", + "type" : "PROPERTY", + "lbl" : "has_obo_format_version" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001199", + "type" : "CLASS", + "lbl" : "linear" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_376913", + "type" : "CLASS", + "lbl" : "Haplorrhini" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_207598", + "meta" : { + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "Homo/Pan/Gorilla group", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Homininae" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_40674", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "mammals", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "mammals", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Mammalia" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002418", + "meta" : { + "definition" : { + "val" : "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "influences (processual)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of or within" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002411", + "meta" : { + "definition" : { + "val" : "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002412", + "meta" : { + "definition" : { + "val" : "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately causally upstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_117571", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "bony vertebrates", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Euteleostomi" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_117570", + "type" : "CLASS", + "lbl" : "Teleostomi" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000066", + "meta" : { + "definition" : { + "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "occurs_in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "occurs in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds_in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" + } ] + }, + "type" : "PROPERTY", + "lbl" : "occurs in" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "meta" : { + "definition" : { + "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "site of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "contains process" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000027", + "type" : "CLASS", + "lbl" : "data item" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000062", + "meta" : { + "definition" : { + "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is preceded by" + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "preceded by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "preceded_by" + } ] + }, + "type" : "PROPERTY", + "lbl" : "preceded by" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000063", + "meta" : { + "definition" : { + "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "precedes" + } ] + }, + "type" : "PROPERTY", + "lbl" : "precedes" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0003824", + "type" : "CLASS", + "lbl" : "catalytic activity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000019", + "type" : "CLASS", + "lbl" : "quality" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000015", + "meta" : { + "definition" : { + "val" : "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "process" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000428", + "meta" : { + "definition" : { + "val" : "A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "group:OBI" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "requires discussion" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002090", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/BFO_0000063" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "ends_at_start_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "meets" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately precedes" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001018", + "meta" : { + "definition" : { + "val" : "A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "relational physical quality", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "physical quality" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_02500000", + "meta" : { + "definition" : { + "val" : "A process in which includes the components of an environmental system as participants.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "environmental system process" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002410", + "meta" : { + "definition" : { + "val" : "This relation groups causal relations between material entities and causal relations between processes", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002404", + "meta" : { + "definition" : { + "val" : "inverse of upstream of", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally downstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000161", + "meta" : { + "definition" : { + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.", + "xrefs" : [ "PATOC:melissa" ] + } + }, + "type" : "CLASS", + "lbl" : "rate" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002405", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately causally downstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016301", + "type" : "CLASS", + "lbl" : "kinase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_32525", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "Theria", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Theria " + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", + "type" : "PROPERTY", + "lbl" : "in_subset" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_32524", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "amniotes", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Amniota" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_32523", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "tetrapods", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Tetrapoda" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000004", + "meta" : { + "definition" : { + "val" : "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. 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"http://purl.obolibrary.org/obo/RO_0002566", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002411", "http://purl.obolibrary.org/obo/RO_0002333" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000062", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000062" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002428", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/RO_0002211" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000066" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002598", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002429", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002211", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002578", "http://purl.obolibrary.org/obo/RO_0002578" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002314", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002314", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000063", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000063" ] + } ] } ] } \ No newline at end of file diff --git a/src/ontology/imports/pco_import.obo b/src/ontology/imports/pco_import.obo index 5ad6f962..0c8554e5 100644 --- a/src/ontology/imports/pco_import.obo +++ b/src/ontology/imports/pco_import.obo @@ -1,5 +1,9 @@ format-version: 1.2 -ontology: urn:absolute:/imports/pco_import.owl +data-version: pato/releases/2019-10-29/imports/pco_import.owl +subsetdef: ro-eco "" +subsetdef: RO:0002259 "" +ontology: pato/imports/pco_import +owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(NamedIndividual())\nDeclaration(AnnotationProperty())\n\n############################\n# Object Properties\n############################\n\n# Object Property: (located in)\n\nObjectPropertyRange( ObjectIntersectionOf( ObjectComplementOf()))\n\n# Object Property: (enabled by)\n\nSubObjectPropertyOf( ObjectInverseOf())\n\n# Object Property: (has member)\n\nIrreflexiveObjectProperty()\n\n\n\n############################\n# Classes\n############################\n\n# Class: (continuant)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (occurrent)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (independent continuant)\n\n\n# Class: (specifically dependent continuant)\n\n\n# Class: (generically dependent continuant)\n\n\n# Class: (material entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (immaterial entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (anthropogenic environment)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( ))))\nSubClassOf( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))\n\n# Class: (natural environment)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectComplementOf(ObjectSomeValuesFrom( ))))\n\n# Class: (environmental system determined by a quality)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( )))))\nSubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))\n\n# Class: (environment associated with a plant part or small plant)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ObjectUnionOf( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))))\nSubClassOf( ObjectSomeValuesFrom( ObjectUnionOf( ObjectIntersectionOf( ObjectSomeValuesFrom( )))))\n\n# Class: (ecosystem)\n\nEquivalentClasses( ObjectUnionOf(ObjectIntersectionOf( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( )))\n\n# Class: (environmental system process)\n\nSubClassOf( ObjectSomeValuesFrom( ObjectUnionOf( )))\n\n# Class: (kinase activity)\n\nSubClassOf( ObjectHasSelf())\n\n# Class: (curation status specification)\n\nEquivalentClasses( ObjectOneOf( ))\n\n# Class: (obsolescence reason specification)\n\nEquivalentClasses( ObjectOneOf( ))\n\n# Class: (denotator type)\n\nEquivalentClasses( ObjectOneOf( ))\n\n# Class: (ecological community)\n\nEquivalentClasses( ObjectIntersectionOf( ObjectMinCardinality(2 ObjectIntersectionOf( ObjectSomeValuesFrom( )))))\nSubClassOf( ObjectSomeValuesFrom( ObjectIntersectionOf( ObjectSomeValuesFrom( ))))\n\n# Class: (single-species collection of organisms)\n\nEquivalentClasses( ObjectIntersectionOf(ObjectAllValuesFrom( ) ObjectAllValuesFrom( ObjectExactCardinality(1 )) ObjectMinCardinality(2 )))\n\n# Class: ()\n\nEquivalentClasses( ObjectOneOf())\n\n\n############################\n# Named Individuals\n############################\n\n# Individual: (metadata complete)\n\n\n# Individual: (organizational term)\n\n\n# Individual: (ready for release)\n\n\n# Individual: (metadata incomplete)\n\n\n# Individual: (uncurated)\n\n\n# Individual: (pending final vetting)\n\n\n# Individual: (placeholder removed)\n\n\n# Individual: (terms merged)\n\n\n# Individual: (term imported)\n\n\n# Individual: (term split)\n\n\n# Individual: (to be replaced with external ontology term)\n\n\n# Individual: (requires discussion)\n\n\n\nSubClassOf(ObjectSomeValuesFrom( ) ObjectUnionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))))\nDisjointClasses( )\nDifferentIndividuals( )\nDifferentIndividuals( )\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf() ) )\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z\"^^xsd:string) Annotation(rdfs:label \"infer input from direct reg\"^^xsd:string) Body(ClassAtom( Variable()) ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"GP(X) part_of complex(Y) enables MF(Z) -> X contributes_to Z\"^^xsd:string) Annotation(rdfs:label \"contrib to MF\"^^xsd:string) Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z),\ne.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'\") Annotation(rdfs:label \"enabling an MF enables its parts\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'\"^^xsd:string) Annotation(rdfs:label \"involved in BP\"^^xsd:string) Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From ligand activity to has_ligand\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to \\\"... -> overlaps\\\"\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.\") Annotation(rdfs:label \"inferring direct reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct neg reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct positive reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From has_ligand to ligand activity\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"effector input is compound function input\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"Input of effector is input of its parent MF\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly regulates X, its parent MF directly regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly positively regulates X, its parent MF directly positively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"if effector directly negatively regulates X, its parent MF directly negatively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nAnnotationAssertion(rdfs:comment \"\"@en)\n) [Term] id: BFO:0000001 @@ -8,80 +12,2046 @@ name: entity [Term] id: BFO:0000002 name: continuant +def: "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts." [] is_a: BFO:0000001 ! entity disjoint_from: BFO:0000003 ! occurrent [Term] id: BFO:0000003 name: occurrent +def: "An entity that has temporal parts and that happens, unfolds or develops through time." [] is_a: BFO:0000001 ! entity [Term] id: BFO:0000004 name: independent continuant +def: "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything." [] +def: "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/017-002"} is_a: BFO:0000002 ! continuant disjoint_from: BFO:0000020 ! specifically dependent continuant +disjoint_from: BFO:0000020 ! specifically dependent continuant +disjoint_from: BFO:0000031 ! generically dependent continuant + +[Term] +id: BFO:0000006 +name: spatial region +is_a: BFO:0000141 ! immaterial entity + +[Term] +id: BFO:0000015 +name: process +def: "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." [] +def: "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/083-003"} +is_a: BFO:0000003 ! occurrent + +[Term] +id: BFO:0000019 +name: quality +is_a: BFO:0000020 ! specifically dependent continuant [Term] id: BFO:0000020 name: specifically dependent continuant +def: "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same." [] +def: "b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])" [] +def: "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/050-003"} is_a: BFO:0000002 ! continuant +disjoint_from: BFO:0000031 ! generically dependent continuant [Term] id: BFO:0000027 name: object aggregate is_a: BFO:0000040 ! material entity +[Term] +id: BFO:0000029 +name: site +is_a: BFO:0000141 ! immaterial entity + +[Term] +id: BFO:0000031 +name: generically dependent continuant +def: "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time." [] +def: "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])" [] +is_a: BFO:0000002 ! continuant +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + [Term] id: BFO:0000040 name: material entity +def: "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time." [] +is_a: BFO:0000004 ! independent continuant +disjoint_from: BFO:0000141 ! immaterial entity + +[Term] +id: BFO:0000141 +name: immaterial entity is_a: BFO:0000004 ! independent continuant +[Term] +id: CARO:0000003 +name: anatomical structure +is_a: CARO:0000006 ! material anatomical entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl + +[Term] +id: CARO:0000006 +name: material anatomical entity +is_a: BFO:0000040 ! material entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl + +[Term] +id: CARO:0000014 +name: cell part +is_a: CARO:0000003 ! anatomical structure +property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl +property_value: IAO:0000589 "cell part (CARO)" xsd:string + [Term] id: CARO:0001010 name: organism or virus or viroid +def: "Material anatomical entity that is a member of an individual species or is a viral or viroid particle." [] is_a: PCO:0000031 ! organismal entity +property_value: http://purl.obolibrary.org/obo/IAO_created_by "Melissa Haendel" xsd:string +property_value: http://purl.obolibrary.org/obo/IAO_creation_date "9/18/11" xsd:string +property_value: IAO:0000589 "organism or virus" xsd:string + +[Term] +id: CL:0000000 +name: cell +is_a: CARO:0000003 ! anatomical structure +property_value: IAO:0000412 http://purl.obolibrary.org/obo/cl.owl + +[Term] +id: ENVO:00002297 +name: environmental feature +def: "A material entity which determines an environmental system." [DOI:10.1186/2041-1480-4-43, NM:nm, ORCID:0000-0002-4366-3088] +is_a: BFO:0000040 ! material entity +intersection_of: BFO:0000040 ! material entity +intersection_of: RO:0002508 ENVO:01000254 ! determines environmental system +relationship: RO:0002508 ENVO:01000254 ! determines environmental system + +[Term] +id: ENVO:00010483 +name: environmental material +def: "A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system." [DOI:10.1186/2041-1480-4-43, MA:ma, ORCID:0000-0002-4366-3088, URL:http\://ontology.buffalo.edu/smith/articles/niches.html] +synonym: "portion of environmental material" EXACT [] +is_a: BFO:0000040 ! material entity + +[Term] +id: ENVO:01000254 +name: environmental system +def: "A system which has the disposition to environ one or more material entities." [DOI:10.1186/2041-1480-4-43] +synonym: "environment" EXACT [] +is_a: RO:0002577 ! system + +[Term] +id: ENVO:01000313 +name: anthropogenic environment +def: "An anthropogenic environment is an environmental system which is the product of human activity." [] +is_a: ENVO:01000254 ! environmental system + +[Term] +id: ENVO:01000951 +name: natural environment +def: "An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition." [https://en.wikipedia.org/wiki/Anthropization, https://en.wikipedia.org/wiki/Natural_environment] +is_a: ENVO:01000254 ! environmental system + +[Term] +id: ENVO:01000952 +name: anthropisation +def: "A process during which a natural environmental system is altered by human action." [https://en.wikipedia.org/wiki/Anthropization] +synonym: "anthropization" EXACT [] +is_a: ENVO:02500027 ! anthropogenic environmental process +intersection_of: ENVO:02500027 ! anthropogenic environmental process +intersection_of: RO:0002233 ENVO:01000951 ! has input natural environment +intersection_of: RO:0002234 ENVO:01000313 ! has output anthropogenic environment +relationship: RO:0002233 ENVO:01000951 ! has input natural environment +relationship: RO:0002234 ENVO:01000313 ! has output anthropogenic environment + +[Term] +id: ENVO:01000997 +name: environmental system determined by a quality +def: "An environmental system which is determined by materials bearing roughly homogeneous qualities." [] +is_a: ENVO:01000254 ! environmental system + +[Term] +id: ENVO:01000998 +name: environmental system determined by a material +def: "An environmental system within which an environmental material strongly influences the system's composition and properties." [] +is_a: ENVO:01000254 ! environmental system +intersection_of: ENVO:01000254 ! environmental system +intersection_of: RO:0002507 ENVO:00010483 ! determined by environmental material +relationship: RO:0002507 ENVO:00010483 ! determined by environmental material + +[Term] +id: ENVO:01001000 +name: environmental system determined by an organism +def: "An environmental system which is determined by a living organism." [] +synonym: "host-associated environment" RELATED [] +is_a: ENVO:01001110 ! ecosystem +intersection_of: ENVO:01000254 ! environmental system +intersection_of: RO:0002507 NCBITaxon:131567 ! determined by cellular organisms +relationship: RO:0002507 NCBITaxon:131567 ! determined by cellular organisms + +[Term] +id: ENVO:01001002 +name: animal-associated environment +def: "An environmental system determined by an animal." [] +synonym: "animal environment" BROAD [] +synonym: "Metazoan-associated environment" EXACT [] +is_a: ENVO:01001000 ! environmental system determined by an organism +intersection_of: ENVO:01000254 ! environmental system +intersection_of: RO:0002507 NCBITaxon:33208 ! determined by Metazoa +relationship: RO:0002507 NCBITaxon:33208 ! determined by Metazoa + +[Term] +id: ENVO:01001055 +name: environment associated with an animal part or small animal +def: "An environmental system determined by part of a living or dead animal, or a whole small animal." [] +is_a: ENVO:01000254 ! environmental system +intersection_of: ENVO:01000254 ! environmental system +intersection_of: RO:0002507 CARO:0000006 ! determined by material anatomical entity +relationship: RO:0002507 CARO:0000006 ! determined by material anatomical entity + +[Term] +id: ENVO:01001057 +name: environment associated with a plant part or small plant +def: "An environmental system determined by part of a living or dead plant, or a whole small plant." [] +is_a: ENVO:01000254 ! environmental system + +[Term] +id: ENVO:01001110 +name: ecosystem +def: "An environmental system which includes both living and non-living components." [https://en.wikipedia.org/wiki/Ecosystem] +is_a: ENVO:01000254 ! environmental system + +[Term] +id: ENVO:02500000 +name: environmental system process +def: "A process in which includes the components of an environmental system as participants." [] +is_a: BFO:0000015 ! process + +[Term] +id: ENVO:02500027 +name: anthropogenic environmental process +def: "An environmental process which is driven by the action of humans." [] +is_a: ENVO:02500000 ! environmental system process +intersection_of: ENVO:02500000 ! environmental system process +intersection_of: RO:0002218 NCBITaxon:9606 ! has active participant Homo sapiens +relationship: RO:0002218 NCBITaxon:9606 ! has active participant Homo sapiens + +[Term] +id: GO:0003674 +name: molecular_function +is_a: BFO:0000015 ! process +property_value: IAO:0000589 "molecular process" xsd:string + +[Term] +id: GO:0003824 +name: catalytic activity +is_a: GO:0003674 ! molecular_function + +[Term] +id: GO:0004872 +name: receptor activity + +[Term] +id: GO:0005634 +name: nucleus +is_a: GO:0044464 ! cell part +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl + +[Term] +id: GO:0008150 +name: biological_process +def: "Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end." [GOC:go_curators, GOC:isa_complete] +synonym: "biological process" EXACT [] +synonym: "physiological process" EXACT [] +synonym: "single organism process" RELATED [] +synonym: "single-organism process" RELATED [] +is_a: BFO:0000015 ! process + +[Term] +id: GO:0016301 +name: kinase activity +is_a: GO:0016772 ! transferase activity, transferring phosphorus-containing groups + +[Term] +id: GO:0016740 +name: transferase activity +is_a: GO:0003824 ! catalytic activity + +[Term] +id: GO:0016772 +name: transferase activity, transferring phosphorus-containing groups +is_a: GO:0016740 ! transferase activity + +[Term] +id: GO:0042995 +name: cell projection +is_a: GO:0044464 ! cell part +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl + +[Term] +id: GO:0044464 +name: cell part +is_a: CARO:0000014 ! cell part +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl + +[Term] +id: IAO:0000027 +name: data item +is_a: IAO:0000030 ! information content entity + +[Term] +id: IAO:0000030 +name: information content entity +is_a: BFO:0000031 ! generically dependent continuant + +[Term] +id: IAO:0000078 +name: curation status specification +def: "The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value." [] +is_a: IAO:0000102 ! data about an ontology part +property_value: IAO:0000111 "curation status specification" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)" xsd:string +property_value: IAO:0000117 "PERSON:Bill Bug" xsd:string +property_value: IAO:0000119 GROUP:OBI: xsd:string +property_value: IAO:0000119 "OBI_0000266" xsd:string + +[Term] +id: IAO:0000102 +name: data about an ontology part +def: "data about an ontology part is a data item about a part of an ontology, for example a term" [] +is_a: IAO:0000027 ! data item +property_value: IAO:0000117 "Person:Alan Ruttenberg" xsd:string + +[Term] +id: IAO:0000225 +name: obsolescence reason specification +def: "The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value." [] +is_a: IAO:0000102 ! data about an ontology part +property_value: IAO:0000111 "obsolescence reason specification" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology." xsd:string +property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string +property_value: IAO:0000117 "PERSON: Melanie Courtot" xsd:string + +[Term] +id: IAO:0000409 +name: denotator type +def: "A denotator type indicates how a term should be interpreted from an ontological perspective." [] +is_a: IAO:0000102 ! data about an ontology part +property_value: IAO:0000112 "The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are \"natural kinds\" and the latter arbitrary collections of entities." xsd:string +property_value: IAO:0000117 "Alan Ruttenberg" xsd:string +property_value: IAO:0000119 "Barry Smith, Werner Ceusters" xsd:string + +[Term] +id: NCBITaxon:1 +name: root +synonym: "all" RELATED synonym [] +is_a: BFO:0000040 ! material entity + +[Term] +id: NCBITaxon:117570 +name: Teleostomi +is_a: NCBITaxon:7776 ! Gnathostomata + +[Term] +id: NCBITaxon:117571 +name: Euteleostomi +synonym: "bony vertebrates" EXACT genbank_common_name [] +is_a: NCBITaxon:117570 ! Teleostomi + +[Term] +id: NCBITaxon:131567 +name: cellular organisms +synonym: "biota" RELATED synonym [] +is_a: NCBITaxon:1 ! root + +[Term] +id: NCBITaxon:1338369 +name: Dipnotetrapodomorpha +is_a: NCBITaxon:8287 ! Sarcopterygii + +[Term] +id: NCBITaxon:1437010 +name: Boreoeutheria +synonym: "Boreotheria" RELATED synonym [] +is_a: NCBITaxon:9347 ! Eutheria + +[Term] +id: NCBITaxon:207598 +name: Homininae +synonym: "Homo/Pan/Gorilla group" RELATED synonym [] +is_a: NCBITaxon:9604 ! Hominidae + +[Term] +id: NCBITaxon:2759 +name: Eukaryota +synonym: "Eucarya" RELATED synonym [] +synonym: "Eucaryotae" RELATED synonym [] +synonym: "eucaryotes" EXACT genbank_common_name [] +synonym: "Eukarya" RELATED synonym [] +synonym: "Eukaryotae" RELATED synonym [] +synonym: "eukaryotes" EXACT common_name [] +synonym: "eukaryotes" RELATED blast_name [] +is_a: NCBITaxon:131567 ! cellular organisms + +[Term] +id: NCBITaxon:314146 +name: Euarchontoglires +is_a: NCBITaxon:1437010 ! Boreoeutheria + +[Term] +id: NCBITaxon:314293 +name: Simiiformes +synonym: "Anthropoidea" RELATED synonym [] +is_a: NCBITaxon:376913 ! Haplorrhini + +[Term] +id: NCBITaxon:314295 +name: Hominoidea +synonym: "ape" EXACT common_name [] +synonym: "apes" EXACT genbank_common_name [] +is_a: NCBITaxon:9526 ! Catarrhini + +[Term] +id: NCBITaxon:32523 +name: Tetrapoda +synonym: "tetrapods" EXACT genbank_common_name [] +is_a: NCBITaxon:1338369 ! Dipnotetrapodomorpha + +[Term] +id: NCBITaxon:32524 +name: Amniota +synonym: "amniotes" EXACT genbank_common_name [] +is_a: NCBITaxon:32523 ! Tetrapoda + +[Term] +id: NCBITaxon:32525 +name: Theria +synonym: "Theria" EXACT scientific_name [] +is_a: NCBITaxon:40674 ! Mammalia + +[Term] +id: NCBITaxon:33154 +name: Opisthokonta +synonym: "Fungi/Metazoa group" RELATED synonym [] +synonym: "opisthokonts" RELATED synonym [] +is_a: NCBITaxon:2759 ! Eukaryota + +[Term] +id: NCBITaxon:33208 +name: Metazoa +synonym: "Animalia" RELATED synonym [] +synonym: "animals" RELATED blast_name [] +synonym: "metazoans" EXACT genbank_common_name [] +synonym: "multicellular animals" EXACT common_name [] +is_a: NCBITaxon:33154 ! Opisthokonta + +[Term] +id: NCBITaxon:33213 +name: Bilateria +is_a: NCBITaxon:6072 ! Eumetazoa + +[Term] +id: NCBITaxon:33511 +name: Deuterostomia +synonym: "deuterostomes" EXACT common_name [] +is_a: NCBITaxon:33213 ! Bilateria + +[Term] +id: NCBITaxon:376913 +name: Haplorrhini +is_a: NCBITaxon:9443 ! Primates + +[Term] +id: NCBITaxon:40674 +name: Mammalia +synonym: "mammals" EXACT genbank_common_name [] +synonym: "mammals" RELATED blast_name [] +is_a: NCBITaxon:32524 ! Amniota + +[Term] +id: NCBITaxon:6072 +name: Eumetazoa +is_a: NCBITaxon:33208 ! Metazoa + +[Term] +id: NCBITaxon:7711 +name: Chordata +synonym: "chordates" EXACT genbank_common_name [] +synonym: "chordates" RELATED blast_name [] +is_a: NCBITaxon:33511 ! Deuterostomia + +[Term] +id: NCBITaxon:7742 +name: Vertebrata +synonym: "Vertebrata" EXACT scientific_name [] +synonym: "vertebrates" EXACT genbank_common_name [] +synonym: "vertebrates" RELATED blast_name [] +is_a: NCBITaxon:89593 ! Craniata + +[Term] +id: NCBITaxon:7776 +name: Gnathostomata +synonym: "Gnathostomata" EXACT scientific_name [] +synonym: "jawed vertebrates" EXACT genbank_common_name [] +is_a: NCBITaxon:7742 ! Vertebrata + +[Term] +id: NCBITaxon:8287 +name: Sarcopterygii +is_a: NCBITaxon:117571 ! Euteleostomi + +[Term] +id: NCBITaxon:89593 +name: Craniata +synonym: "Craniata" EXACT scientific_name [] +is_a: NCBITaxon:7711 ! Chordata + +[Term] +id: NCBITaxon:9347 +name: Eutheria +synonym: "eutherian mammals" EXACT common_name [] +synonym: "placental mammals" EXACT common_name [] +synonym: "Placentalia" RELATED synonym [] +synonym: "placentals" EXACT genbank_common_name [] +synonym: "placentals" RELATED blast_name [] +is_a: NCBITaxon:32525 ! Theria + +[Term] +id: NCBITaxon:9443 +name: Primates +synonym: "Primata" RELATED synonym [] +synonym: "primate" EXACT equivalent_name [] +synonym: "primates" RELATED blast_name [] +is_a: NCBITaxon:314146 ! Euarchontoglires + +[Term] +id: NCBITaxon:9526 +name: Catarrhini +is_a: NCBITaxon:314293 ! Simiiformes + +[Term] +id: NCBITaxon:9604 +name: Hominidae +synonym: "great apes" EXACT genbank_common_name [] +synonym: "Pongidae" RELATED synonym [] +is_a: NCBITaxon:314295 ! Hominoidea + +[Term] +id: NCBITaxon:9605 +name: Homo +synonym: "humans" EXACT common_name [] +is_a: NCBITaxon:207598 ! Homininae + +[Term] +id: NCBITaxon:9606 +name: Homo sapiens +synonym: "human" EXACT genbank_common_name [] +synonym: "humans" RELATED [] +synonym: "man" EXACT common_name [] +is_a: NCBITaxon:9605 ! Homo [Term] id: PATO:0000001 name: quality +def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" [PATOC:GVG] +synonym: "trait" EXACT [] +is_a: BFO:0000020 ! specifically dependent continuant +property_value: IAO:0000589 "quality (PATO)" xsd:string + +[Term] +id: PATO:0000014 +name: color +def: "A composite chromatic quality composed of hue, saturation and intensity parts." [PATOC:GVG] +synonym: "colour" EXACT [] +synonym: "relative color" EXACT [] +is_a: PATO:0001300 ! optical quality + +[Term] +id: PATO:0000051 +name: morphology +def: "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure." [] +is_a: BFO:0000019 ! quality +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0000052 +name: shape +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000068 +name: qualitative +is_a: PATO:0000001 ! quality + +[Term] +id: PATO:0000069 +name: deviation(from_normal) +def: "A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average." [] +is_a: PATO:0000068 ! qualitative + +[Term] +id: PATO:0000117 +name: size +def: "A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude." [] +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000141 +name: structure +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000161 +name: rate +def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time." [PATOC:melissa] +is_a: PATO:0002062 ! physical quality of a process + +[Term] +id: PATO:0000322 +name: red +def: "A color hue with high wavelength of the long-wave end of the visible spectrum, evoked in the human observer by radiant energy with wavelengths of approximately 630 to 750 nanometers." [Dictionary:http\://dictionary.reference.com/] +is_a: PATO:0000014 ! color + +[Term] +id: PATO:0000402 +name: branched +is_a: PATO:0002009 ! branchiness + +[Term] +id: PATO:0000587 +name: decreased size +def: "A size quality which is relatively low." [] +synonym: "hypoplasia" NARROW [] +synonym: "reduced" RELATED [] +synonym: "small" RELATED [] +synonym: "tiny" RELATED [] +synonym: "underdeveloped" NARROW [] +is_a: PATO:0000117 ! size +is_a: PATO:0002303 ! decreased object quality + +[Term] +id: PATO:0001018 +name: physical quality +def: "A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities." [PATOC:GVG] +synonym: "relational physical quality" EXACT [] +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0001199 +name: linear +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001236 +name: process quality +def: "A quality which inheres in an process." [PATOC:GVG] +synonym: "quality of a process" EXACT [] +synonym: "quality of occurrent" EXACT [] +synonym: "quality of process" EXACT [] +synonym: "relational quality of occurrent" EXACT [] +is_a: PATO:0000001 ! quality [Term] id: PATO:0001241 name: physical object quality +def: "A quality which inheres in a continuant." [PATOC:GVG] +synonym: "monadic quality of a continuant" EXACT [] +synonym: "monadic quality of an object" NARROW [] +synonym: "monadic quality of continuant" NARROW [] +synonym: "multiply inhering quality of a physical entity" EXACT [] +synonym: "quality of a continuant" EXACT [] +synonym: "quality of a single physical entity" EXACT [] +synonym: "quality of an object" EXACT [] +synonym: "quality of continuant" EXACT [] is_a: PATO:0000001 ! quality +[Term] +id: PATO:0001291 +name: electromagnetic (EM) radiation quality +def: "A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation." [Wikipedia:http\://en.wikipedia.org/wiki/Electromagnetic_radiation] +is_a: PATO:0001739 ! radiation quality + +[Term] +id: PATO:0001300 +name: optical quality +def: "An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light." [PATOC:GVG] +is_a: PATO:0001291 ! electromagnetic (EM) radiation quality + +[Term] +id: PATO:0001338 +name: mixed sex +def: "A biological sex quality inhering in a population of multiple sexes." [MGED:MGED] +is_a: PATO:0002003 ! population quality + +[Term] +id: PATO:0001415 +name: morbidity +def: "A quality inhering in a population by virtue of the proportion of its members that are ill at a given time." [PATOC:GVG] +is_a: PATO:0002003 ! population quality + +[Term] +id: PATO:0001739 +name: radiation quality +def: "A quality that inheres in an bearer by virtue of how that bearer interacts with radiation." [PATOC:GVG] +is_a: PATO:0001018 ! physical quality + [Term] id: PATO:0002003 name: population quality +def: "A quality that inheres in an entire population or part of a population." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality +[Term] +id: PATO:0002009 +name: branchiness +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0002062 +name: physical quality of a process +is_a: PATO:0001236 ! process quality + +[Term] +id: PATO:0002124 +name: laminar +is_a: PATO:0000141 ! structure + +[Term] +id: PATO:0002301 +name: decreased quality +def: "A quality that has a value that is decreased compared to normal or average." [] +is_a: PATO:0000069 ! deviation(from_normal) + +[Term] +id: PATO:0002303 +name: decreased object quality +def: "A quality of an object that has a value that is decreased compared to normal or average." [] +is_a: PATO:0001241 ! physical object quality +is_a: PATO:0002301 ! decreased quality + [Term] id: PCO:0000000 name: collection of organisms +def: "A material entity that consists of two or more organisms, viruses, or viroids." [] +comment: May be of the same or different species. is_a: BFO:0000027 ! object aggregate is_a: PCO:0000031 ! organismal entity +intersection_of: RO:0002351 CARO:0001010 {all_only="true"} ! has member organism or virus or viroid +intersection_of: RO:0002351 CARO:0001010 {minCardinality="2"} ! has member organism or virus or viroid +relationship: RO:0002351 CARO:0001010 ! has member organism or virus or viroid +property_value: IAO:0000112 "Examples include: population, community, species (meaning the collection of organisms that makes up a species, not the taxonomic rank), and family." xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000118 "group of organism" xsd:string +property_value: IAO:0000118 "organism collection" xsd:string [Term] id: PCO:0000001 name: population of organisms +def: "A collection of organisms, all of the same species, that live in the same place." [] +comment: It is sometimes difficult to define the physical boundaries of a population. In the case of sexually reproducing organisms, the individuals within a population have the potential to reproduce with one another during the course of their lifetimes. 'Community', as often used to describe a group of humans, is a type of population. \n\nClasses for population already exist in IDO ('organism population', IDO_0000509) and OBI ('population', OBI_0000181). The definitions should be standardized across OBO Foundry ontologies and only one term used. is_a: PCO:0000018 ! single-species collection of organisms +property_value: IAO:0000112 "" xsd:string +property_value: IAO:0000112 "This a general term that can include every organism of a species living in an area or any subset of them. Subclasses can be more specific as needed." xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000119 ISBN:0878932739 xsd:string + +[Term] +id: PCO:0000002 +name: ecological community +def: "A community of at least two different species, living in a particular area. Must have at least two populations of different species as members." [] +comment: Ecological community is defined broadly here, but includes both ecological interactions (inherited from parent term community) and spatial co-existence. It may be used to describe every organisms living in an area, but is often used to refer only to organisms of a particular taxon or guild (e.g., the plant community, the insect community, the herbivore community). The word community, as it often used to describe a group of humans living together, is a type of single-species collection of organisms, not an ecological community. +is_a: PCO:0000028 ! community +is_a: PCO:0000029 ! multi-species collection of organisms +property_value: IAO:0000114 IAO:0000123 +property_value: IAO:0000116 "Not sure if the equivalancy axiom specifies that both populations are located in the same site." xsd:string +property_value: IAO:0000118 "multispecies community" xsd:string +property_value: IAO:0000119 ISBN:0865423504 xsd:string [Term] id: PCO:0000003 name: quality of a population -is_a: BFO:0000020 ! specifically dependent continuant +def: "A quality that inheres in a biological population." [] +comment: Includes qualities like population size, population growth rate, carrying capacity, immigration rate, emigration rate, fecundity, and death rate. A population quality may depend on the qualities of individual organisms in the population, but cannot be measured or described for a single organism. This term may be replaced by a PATO term. +is_a: PATO:0002003 ! population quality +intersection_of: PATO:0002003 ! population quality +intersection_of: RO:0000052 PCO:0000001 ! inheres in population of organisms +relationship: RO:0000052 PCO:0000001 ! inheres in population of organisms +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000116 "See Chris's comments on population qualities at: http://code.google.com/p/popcomm-ontology/issues/detail?id=4. These may not belong under BFO:quality. May be better to call them population characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2." xsd:string + +[Term] +id: PCO:0000004 +name: quality of an ecological community +def: "A quality that inheres in a community." [] +comment: Includes qualities like diversity, species richness, stability, resilience, community structure, number of trophic levels. A community quality may depend on the qualities of individual organism in the community, but cannot be measured or described for a single individual. is_a: PATO:0002003 ! population quality +intersection_of: PATO:0002003 ! population quality +intersection_of: RO:0000052 PCO:0000002 ! inheres in ecological community +relationship: RO:0000052 PCO:0000002 ! inheres in ecological community +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000116 "These may not belong under BFO:quality. May be better to call them community characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2." xsd:string + +[Term] +id: PCO:0000017 +name: species as a collection of organisms +def: "A collection of organisms that has as parts every organism of given species and no organisms of any other species." [] +comment: This term is neutral with respect to which organisms are included in a species. Membership will depend on the species concept and the taxonomic assertions used to define the species. These criteria must be specified by the user. +is_a: PCO:0000018 ! single-species collection of organisms +property_value: IAO:0000114 IAO:0000120 +property_value: IAO:0000116 "At the moment there is no way to specify in an OWL axiom that the collection includes every individual of a species. This should be added, if possible." xsd:string [Term] id: PCO:0000018 name: single-species collection of organisms +def: "A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species." [] is_a: PCO:0000000 ! collection of organisms +property_value: IAO:0000114 IAO:0000120 +property_value: IAO:0000118 "collection of organisms of the same species" xsd:string + +[Term] +id: PCO:0000027 +name: collection of humans +def: "A collection of organisms of the same species that has as members only humans." [] +is_a: PCO:0000018 ! single-species collection of organisms +intersection_of: PCO:0000018 ! single-species collection of organisms +intersection_of: RO:0002351 NCBITaxon:9606 {all_only="true"} ! has member Homo sapiens +intersection_of: RO:0002351 NCBITaxon:9606 {minCardinality="2"} ! has member Homo sapiens +relationship: RO:0002351 NCBITaxon:9606 ! has member Homo sapiens +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000118 "human community" xsd:string +property_value: IAO:0000118 "human population" xsd:string + +[Term] +id: PCO:0000028 +name: community +def: "A collection of organisms of the same species whose members are all either genealogically related to each other or have mated with each other." [] +comment: These relations can include shared values, occupying the same spatial regkion. A community be be a single species collection of organsisms (as in a human community, which is also a type of population) or a or multi-species collection of organisms (as in an ecological community). +is_a: PCO:0000000 ! collection of organisms +property_value: IAO:0000114 IAO:0000123 +property_value: IAO:0000116 "Biological or social relations are covered by RO_0002437 (biotically interacts with), but that relations does provide an easy way to specify that two entities are interacting with each other (participating in the same interaction). Until that axiom is specified, the logical definition of this term is incomplete." xsd:string + +[Term] +id: PCO:0000029 +name: multi-species collection of organisms +def: "A collection of organisms that consists of two or more organisms from at least two species." [] +is_a: PCO:0000000 ! collection of organisms +property_value: IAO:0000114 IAO:0000123 +property_value: IAO:0000116 "Need to add axiom to specify that it has at a mimum members of two different species, but not sure how to specify that. Can't say \"('has member' only ('member of' min 2 'species as a collection of organisms'))\"." xsd:string [Term] id: PCO:0000031 name: organismal entity +def: "A material entity that is one or more organisms, viruses or viroids." [] is_a: BFO:0000040 ! material entity union_of: CARO:0001010 ! organism or virus or viroid union_of: PCO:0000000 ! collection of organisms +property_value: IAO:0000114 IAO:0000125 + +[Term] +id: PO:0000003 +name: whole plant +def: "A plant structure (PO:0005679) which is a whole organism." [] +synonym: "bush (narrow)" NARROW [] +synonym: "clonal colony (related)" RELATED [] +synonym: "colony (related)" RELATED [] +synonym: "frutex (narrow)" NARROW [] +synonym: "frutices (narrow)" NARROW [] +synonym: "gametophyte (narrow)" NARROW [] +synonym: "genet (broad)" BROAD [] +synonym: "herb (narrow)" NARROW [] +synonym: "liana (narrow)" NARROW [] +synonym: "planta entera (Spanish, exact)" EXACT [] +synonym: "prothalli (narrow)" NARROW [] +synonym: "prothallium (narrow)" NARROW [] +synonym: "prothallus (narrow)" NARROW [] +synonym: "ramet (broad)" BROAD [] +synonym: "seedling (narrow)" NARROW [] +synonym: "shrub (narrow)" NARROW [] +synonym: "sporophyte (narrow)" NARROW [] +synonym: "suffrutex (narrow)" NARROW [] +synonym: "suffrutices (narrow)" NARROW [] +synonym: "tree (narrow)" NARROW [] +synonym: "vine (narrow)" NARROW [] +synonym: "woody clump (narrow)" NARROW [] +synonym: "植物体全体 (Japanese, exact)" EXACT [] +is_a: PO:0009011 ! plant structure + +[Term] +id: PO:0009011 +name: plant structure +def: "An anatomical structure that is or was part of a plant, or was derived from a part of a plant." [] +synonym: "estructura vegetal (Spanish, exact)" EXACT [] +synonym: "植物 構造 (Japanese, exact)" EXACT [] +is_a: PO:0025131 ! plant anatomical entity + +[Term] +id: PO:0025131 +name: plant anatomical entity +def: "An anatomical entity that is or was part of a plant." [] +synonym: "entidad anatómica vegetal (Spanish, exact)" EXACT [] +synonym: "植物 解剖学（形態）的実体 (Japanese, exact)" EXACT [] +is_a: BFO:0000040 ! material entity + +[Term] +id: RO:0002577 +name: system +def: "A material entity consisting of multiple components that are causally integrated." [] +is_a: BFO:0000040 ! material entity +property_value: IAO:0000116 "May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.jbiomedsem.com/content/4/1/43 xsd:string + +[Term] +id: Subset +is_a: IAO:0000102 ! data about an ontology part + +[Term] +id: UBERON:0001062 +name: anatomical entity +def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [] +is_a: BFO:0000004 ! independent continuant + +[Typedef] +id: BFO:0000050 +name: part of +def: "a core relation that holds between a part and its whole" [] +property_value: IAO:0000111 "is part of" xsd:string +property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string +property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string +property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string +property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string +property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string +property_value: IAO:0000118 "part_of" xsd:string +property_value: RO:0001900 RO:0001901 +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf +property_value: seeAlso http://www.obofoundry.org/ro/#OBO_REL:part_of xsd:string +is_transitive: true +is_a: RO:0002131 ! overlaps +inverse_of: BFO:0000051 ! has part + +[Typedef] +id: BFO:0000051 +name: has part +def: "a core relation that holds between a whole and its part" [] +property_value: IAO:0000111 "has part" xsd:string +property_value: IAO:0000112 "my body has part my brain (continuant parthood, two material entities)" xsd:string +property_value: IAO:0000112 "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" xsd:string +property_value: IAO:0000112 "this year has part this day (occurrent parthood)" xsd:string +property_value: IAO:0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." xsd:string +property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string +property_value: IAO:0000118 "has_part" xsd:string +property_value: RO:0001900 RO:0001901 +is_transitive: true +is_a: RO:0002131 ! overlaps + +[Typedef] +id: BFO:0000062 +name: preceded by +def: "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] +subset: ro-eco +property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:preceded_by xsd:string +property_value: IAO:0000111 "preceded by" xsd:string +property_value: IAO:0000116 "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." xsd:string +property_value: IAO:0000118 "is preceded by" xsd:string +property_value: IAO:0000118 "preceded_by" xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent +holds_over_chain: BFO:0000050 BFO:0000062 +is_transitive: true +is_a: RO:0002086 ! ends after +inverse_of: BFO:0000063 ! precedes + +[Typedef] +id: BFO:0000063 +name: precedes +def: "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] +subset: ro-eco +property_value: IAO:0000111 "precedes" xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent +holds_over_chain: BFO:0000050 BFO:0000063 +is_transitive: true +is_a: RO:0002222 ! temporally related to + +[Typedef] +id: BFO:0000066 +name: occurs in +def: "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" [] +comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant +property_value: IAO:0000111 "occurs in" xsd:string +property_value: IAO:0000118 "occurs_in" xsd:string +property_value: IAO:0000118 "unfolds in" xsd:string +property_value: IAO:0000118 "unfolds_in" xsd:string +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl +domain: BFO:0000003 ! occurrent +range: BFO:0000004 ! independent continuant +holds_over_chain: BFO:0000050 BFO:0000066 +inverse_of: BFO:0000067 ! contains process +transitive_over: BFO:0000050 ! part of + +[Typedef] +id: BFO:0000067 +name: contains process +def: "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" [] +comment: Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant +property_value: IAO:0000111 "site of" xsd:string +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + +[Typedef] +id: RO:0000052 +name: inheres in +def: "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence" [] +property_value: IAO:0000111 "inheres in" xsd:string +property_value: IAO:0000112 "this fragility inheres in this vase" xsd:string +property_value: IAO:0000112 "this red color inheres in this apple" xsd:string +property_value: IAO:0000116 "A dependent inheres in its bearer at all times for which the dependent exists." xsd:string +property_value: IAO:0000118 "inheres_in" xsd:string +property_value: RO:0001900 RO:0001901 +is_a: RO:0002314 ! inheres in part of +inverse_of: RO:0000053 ! bearer of + +[Typedef] +id: RO:0000053 +name: bearer of +def: "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence" [] +property_value: IAO:0000111 "bearer of" xsd:string +property_value: IAO:0000112 "this apple is bearer of this red color" xsd:string +property_value: IAO:0000112 "this vase is bearer of this fragility" xsd:string +property_value: IAO:0000116 "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." xsd:string +property_value: IAO:0000118 "bearer_of" xsd:string +property_value: IAO:0000118 "is bearer of" xsd:string +property_value: RO:0001900 RO:0001901 +range: BFO:0000020 ! specifically dependent continuant + +[Typedef] +id: RO:0000056 +name: participates in +def: "a relation between a continuant and a process, in which the continuant is somehow involved in the process" [] +property_value: IAO:0000111 "participates in" xsd:string +property_value: IAO:0000112 "this blood clot participates in this blood coagulation" xsd:string +property_value: IAO:0000112 "this input material (or this output material) participates in this process" xsd:string +property_value: IAO:0000112 "this investigator participates in this investigation" xsd:string +property_value: IAO:0000118 "participates_in" xsd:string +domain: BFO:0000002 ! continuant +range: BFO:0000003 ! occurrent +inverse_of: RO:0000057 ! has participant + +[Typedef] +id: RO:0000057 +name: has participant +def: "a relation between a process and a continuant, in which the continuant is somehow involved in the process" [] +property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:has_participant xsd:string +property_value: IAO:0000111 "has participant" xsd:string +property_value: IAO:0000112 "this blood coagulation has participant this blood clot" xsd:string +property_value: IAO:0000112 "this investigation has participant this investigator" xsd:string +property_value: IAO:0000112 "this process has participant this input material (or this output material)" xsd:string +property_value: IAO:0000116 "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." xsd:string +property_value: IAO:0000118 "has_participant" xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000002 ! continuant +holds_over_chain: BFO:0000051 RO:0000057 + +[Typedef] +id: RO:0000080 +name: quality of +def: "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence" [] +property_value: IAO:0000112 "this red color is a quality of this apple" xsd:string +property_value: IAO:0000116 "A quality inheres in its bearer at all times for which the quality exists." xsd:string +property_value: IAO:0000118 "is quality of" xsd:string +property_value: IAO:0000118 "quality_of" xsd:string +is_a: RO:0000052 ! inheres in +inverse_of: RO:0000086 ! has quality + +[Typedef] +id: RO:0000086 +name: has quality +def: "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence" [] +property_value: IAO:0000112 "this apple has quality this red color" xsd:string +property_value: IAO:0000116 "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." xsd:string +property_value: IAO:0000118 "has_quality" xsd:string +range: BFO:0000019 ! quality +is_a: RO:0000053 ! bearer of + +[Typedef] +id: RO:0001015 +name: location of +def: "a relation between two independent continuants, the location and the target, in which the target is entirely within the location" [] +property_value: IAO:0000111 "is location of" xsd:string +property_value: IAO:0000112 "my head is the location of my brain" xsd:string +property_value: IAO:0000112 "this cage is the location of this rat" xsd:string +property_value: IAO:0000116 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000118 "location_of" xsd:string +property_value: RO:0001900 RO:0001901 +is_transitive: true +inverse_of: RO:0001025 ! located in + +[Typedef] +id: RO:0001018 +name: contained in +subset: ro-eco +property_value: IAO:0000111 "contained in" xsd:string +property_value: IAO:0000116 "Containment is location not involving parthood, and arises only where some immaterial continuant is involved." xsd:string +property_value: IAO:0000116 "Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):" xsd:string +property_value: IAO:0000116 "Intended meaning:\ndomain: material entity\nrange: spatial region or site (immaterial continuant)\n " xsd:string +property_value: IAO:0000118 "contained_in" xsd:string +property_value: RO:0001900 RO:0001901 +domain: BFO:0000040 ! material entity +range: BFO:0000004 ! independent continuant +holds_over_chain: RO:0001025 BFO:0000050 +inverse_of: RO:0001019 ! contains + +[Typedef] +id: RO:0001019 +name: contains +subset: ro-eco +property_value: IAO:0000111 "contains" xsd:string +property_value: RO:0001900 RO:0001901 + +[Typedef] +id: RO:0001025 +name: located in +def: "a relation between two independent continuants, the target and the location, in which the target is entirely within the location" [] +property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:located_in xsd:string +property_value: IAO:0000111 "located in" xsd:string +property_value: IAO:0000112 "my brain is located in my head" xsd:string +property_value: IAO:0000112 "this rat is located in this cage" xsd:string +property_value: IAO:0000116 "Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus" xsd:string +property_value: IAO:0000116 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000118 "located_in" xsd:string +property_value: RO:0001900 RO:0001901 +domain: BFO:0000004 {http://purl.obolibrary.org/obo/IAO_0000116="This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation."} ! independent continuant +range: BFO:0000004 {http://purl.obolibrary.org/obo/IAO_0000116="This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation."} ! independent continuant +is_transitive: true + +[Typedef] +id: RO:0002013 +name: has regulatory component activity +def: "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B." [] +is_a: RO:0002017 ! has component activity +is_a: RO:0002334 ! regulated by +created_by: dos +creation_date: 2017-05-24T09:30:46Z + +[Typedef] +id: RO:0002014 +name: has negative regulatory component activity +def: "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B." [] +comment: By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'. +is_a: RO:0002013 ! has regulatory component activity +is_a: RO:0002335 ! negatively regulated by +created_by: dos +creation_date: 2017-05-24T09:31:01Z + +[Typedef] +id: RO:0002015 +name: has positive regulatory component activity +def: "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B." [] +comment: By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'. +is_a: RO:0002013 ! has regulatory component activity +is_a: RO:0002336 ! positively regulated by +created_by: dos +creation_date: 2017-05-24T09:31:17Z + +[Typedef] +id: RO:0002017 +name: has component activity +comment: A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B. +is_a: RO:0002018 ! has component process +created_by: dos +creation_date: 2017-05-24T09:44:33Z + +[Typedef] +id: RO:0002018 +name: has component process +def: "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] +is_a: RO:0002180 ! has component +created_by: dos +creation_date: 2017-05-24T09:49:21Z + +[Typedef] +id: RO:0002019 +name: has ligand +def: "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function." [GOC:dos] +domain: GO:0004872 ! receptor activity +is_a: RO:0002233 ! has input +created_by: dos +creation_date: 2017-07-19T17:30:36Z + +[Typedef] +id: RO:0002022 +is_a: RO:0002334 ! regulated by +inverse_of: RO:0002578 ! directly regulates + +[Typedef] +id: RO:0002023 +is_a: RO:0002022 +inverse_of: RO:0002630 ! directly negatively regulates + +[Typedef] +id: RO:0002024 +is_a: RO:0002022 +inverse_of: RO:0002629 ! directly positively regulates + +[Typedef] +id: RO:0002025 +is_functional: true +is_a: RO:0002017 ! has component activity +is_a: RO:0002211 ! regulates + +[Typedef] +id: RO:0002086 +name: ends after +comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) +subset: ro-eco +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +is_transitive: true +is_a: RO:0002222 ! temporally related to + +[Typedef] +id: RO:0002087 +name: immediately preceded by +comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000118 "starts_at_end_of" xsd:string +is_a: BFO:0000062 ! preceded by +inverse_of: RO:0002090 ! immediately precedes + +[Typedef] +id: RO:0002090 +name: immediately precedes +comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) +subset: ro-eco +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000118 "ends_at_start_of" xsd:string +property_value: IAO:0000118 "meets" xsd:string +property_value: RO:0002575 BFO:0000063 +is_a: BFO:0000063 ! precedes + +[Typedef] +id: RO:0002131 +name: overlaps +def: "x overlaps y if and only if there exists some z such that x has part z and z part of y" [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: RO:0001900 RO:0001901 +holds_over_chain: BFO:0000050 BFO:0000050 +holds_over_chain: BFO:0000051 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} +holds_over_chain: BFO:0000051 RO:0002131 +is_a: RO:0002323 ! mereotopologically related to +expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" [] + +[Typedef] +id: RO:0002180 +name: has component +def: "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." xsd:string +property_value: IAO:0000232 "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." xsd:string +property_value: RO:0001900 RO:0001901 +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:Componency +is_a: BFO:0000051 ! has part + +[Typedef] +id: RO:0002211 +name: regulates +def: "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2." [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000117 "David Hill" xsd:string +property_value: IAO:0000117 "Tanya Berardini" xsd:string +property_value: IAO:0000119 "GO" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000232 "Regulation precludes parthood; the regulatory process may not be within the regulated process." xsd:string +property_value: IAO:0000589 "regulates (processual)" xsd:string +property_value: IAO:0000600 "false" xsd:boolean +domain: BFO:0000015 ! process +range: BFO:0000015 ! process +holds_over_chain: RO:0002578 RO:0002578 +is_transitive: true +is_a: RO:0002411 ! causally upstream of +inverse_of: RO:0002334 ! regulated by + +[Typedef] +id: RO:0002212 +name: negatively regulates +def: "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2." [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "negatively regulates (process to process)" xsd:string +is_a: RO:0002211 ! regulates +is_a: RO:0002305 ! causally upstream of, negative effect +inverse_of: RO:0002335 ! negatively regulated by + +[Typedef] +id: RO:0002213 +name: positively regulates +def: "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "positively regulates (process to process)" xsd:string +holds_over_chain: RO:0002212 RO:0002212 +is_transitive: true +is_a: RO:0002211 ! regulates +is_a: RO:0002304 ! causally upstream of, positive effect +inverse_of: RO:0002336 ! positively regulated by + +[Typedef] +id: RO:0002215 +name: capable of +def: "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. " [] +subset: ro-eco +property_value: IAO:0000112 "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" xsd:string +property_value: IAO:0000112 "osteoclast SubClassOf 'capable of' some 'bone resorption'" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "has function realized in" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20123131 +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/21208450 +property_value: IAO:0000232 "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." xsd:string +domain: BFO:0000004 ! independent continuant +range: BFO:0000015 ! process +is_a: RO:0002216 ! capable of part of +expand_expression_to: "RO_0000053 some (RO_0000054 only ?Y)" [] + +[Typedef] +id: RO:0002216 +name: capable of part of +def: "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "has function in" xsd:string +holds_over_chain: RO:0002215 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} +is_a: RO:0002328 ! functionally related to +is_a: RO:0002500 ! causal agent in +expand_expression_to: "RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))" [] + +[Typedef] +id: RO:0002217 +name: actively participates in +def: "x actively participates in y if and only if x participates in y and x realizes some active role" [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "agent in" xsd:string +is_a: RO:0000056 ! participates in +inverse_of: RO:0002218 ! has active participant + +[Typedef] +id: RO:0002218 +name: has active participant +def: "x has participant y if and only if x realizes some active role that inheres in y" [] +subset: ro-eco +property_value: IAO:0000112 "'heart development' has active participant some Shh protein" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "This may be obsoleted and replaced by the original 'has agent' relation" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "has agent" xsd:string +is_a: RO:0000057 ! has participant + +[Typedef] +id: RO:0002222 +name: temporally related to +comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. +subset: ro-eco +property_value: http://purl.org/dc/elements/1.1/source https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 xsd:anyURI +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 https://en.wikipedia.org/wiki/Allen%27s_interval_algebra +property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent + +[Typedef] +id: RO:0002233 +name: has input +def: "p has direct input c iff c is a participant in p, c is present at the start of p, and the state of c is modified during p." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "consumes" xsd:string +domain: BFO:0000015 ! process +range: BFO:0000040 ! material entity +is_a: RO:0000057 ! has participant +inverse_of: RO:0002352 ! input of + +[Typedef] +id: RO:0002234 +name: has output +def: "p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "produces" xsd:string +is_a: RO:0000057 ! has participant +inverse_of: RO:0002353 ! output of + +[Typedef] +id: RO:0002263 +name: acts upstream of +def: "c involved in regulation of p if c enables 'p' and p' causally upstream of p" [] +holds_over_chain: RO:0002327 RO:0002411 +is_a: RO:0002264 ! acts upstream of or within + +[Typedef] +id: RO:0002264 +name: acts upstream of or within +def: "c acts upstream of or within p if c is enables 'p' and p' causally upstream of or within p" [] +synonym: "affects" RELATED [] +holds_over_chain: RO:0002327 RO:0002418 +is_a: RO:0002500 ! causal agent in + +[Typedef] +id: RO:0002304 +name: causally upstream of, positive effect +comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y +property_value: http://purl.org/dc/elements/1.1/creator "cjm" xsd:string +is_a: RO:0002411 ! causally upstream of + +[Typedef] +id: RO:0002305 +name: causally upstream of, negative effect +comment: holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y +property_value: http://purl.org/dc/elements/1.1/creator "cjm" xsd:string +is_a: RO:0002411 ! causally upstream of + +[Typedef] +id: RO:0002314 +name: inheres in part of +def: "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w." [] +property_value: IAO:0000116 "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20064205 +property_value: RO:0001900 RO:0001901 +holds_over_chain: RO:0000052 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} +is_a: RO:0002502 ! depends on +transitive_over: BFO:0000050 ! part of + +[Typedef] +id: RO:0002323 +name: mereotopologically related to +def: "A mereological relationship or a topological relationship" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" xsd:string +property_value: RO:0001900 RO:0001901 + +[Typedef] +id: RO:0002324 +name: developmentally related to +def: "A relationship that holds between entities participating in some developmental process (GO:0032502)" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" xsd:string + +[Typedef] +id: RO:0002326 +name: contributes to +property_value: IAO:0000112 "ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity." xsd:string +property_value: IAO:0000112 "eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to \"ribosome binding\". And all three are part_of an eIF2 complex" xsd:string +property_value: IAO:0000112 "Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity." xsd:string +property_value: IAO:0000116 "We would like to say\n\nif and only if\n exists c', p'\n c part_of c' and c' capable_of p\n and\n c capable_of p' and p' part_of p\nthen\n c contributes_to p\n\nHowever, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to xsd:string +property_value: IAO:0000232 "In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. " xsd:string +is_a: RO:0002216 ! capable of part of +is_a: RO:0002329 ! part of structure that is capable of + +[Typedef] +id: RO:0002327 +name: enables +property_value: IAO:0000112 "a particular instances of akt-2 enables some instance of protein kinase activity" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "catalyzes" xsd:string +property_value: IAO:0000118 "executes" xsd:string +property_value: IAO:0000118 "has" xsd:string +property_value: IAO:0000118 "is catalyzing" xsd:string +property_value: IAO:0000118 "is executing" xsd:string +property_value: IAO:0000232 "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." xsd:string +property_value: IAO:0000232 "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." xsd:string +is_a: RO:0002215 ! capable of +inverse_of: RO:0002333 ! enabled by +transitive_over: BFO:0000051 ! has part +transitive_over: RO:0002017 ! has component activity + +[Typedef] +id: RO:0002328 +name: functionally related to +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "This is a grouping relation that collects relations used for the purpose of connecting structure and function" xsd:string + +[Typedef] +id: RO:0002329 +name: part of structure that is capable of +def: "this relation holds between c and p when c is part of some c', and c' is capable of p." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "false" xsd:boolean +holds_over_chain: BFO:0000050 RO:0002215 {http://purl.obolibrary.org/obo/RO_0002581="true"} +is_a: RO:0002328 ! functionally related to + +[Typedef] +id: RO:0002331 +name: involved in +def: "c involved_in p if and only if c enables some process p', and p' is part of p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "actively involved in" xsd:string +property_value: IAO:0000118 "enables part of" xsd:string +holds_over_chain: RO:0002327 BFO:0000050 +is_a: RO:0002431 ! involved in or involved in regulation of +transitive_over: BFO:0000050 ! part of + +[Typedef] +id: RO:0002333 +name: enabled by +def: "inverse of enables" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002328 ! functionally related to + +[Typedef] +id: RO:0002334 +name: regulated by +def: "inverse of regulates" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000589 "regulated by (processual)" xsd:string +domain: BFO:0000015 ! process +range: BFO:0000015 ! process +is_transitive: true +is_a: RO:0002427 ! causally downstream of or within + +[Typedef] +id: RO:0002335 +name: negatively regulated by +def: "inverse of negatively regulates" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002334 ! regulated by + +[Typedef] +id: RO:0002336 +name: positively regulated by +def: "inverse of positively regulates" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002334 ! regulated by + +[Typedef] +id: RO:0002350 +name: member of +def: "is member of is a mereological relation between a item and a collection." [] +property_value: IAO:0000112 "An organism that is a member of a population of organisms" xsd:string +property_value: IAO:0000118 "is member of" xsd:string +property_value: IAO:0000118 "member part of" xsd:string +property_value: IAO:0000119 "SIO" xsd:string +property_value: RO:0001900 RO:0001901 +is_a: BFO:0000050 ! part of +inverse_of: RO:0002351 ! has member + +[Typedef] +id: RO:0002351 +name: has member +def: "has member is a mereological relation between a collection and an item." [] +property_value: IAO:0000119 "SIO" xsd:string +property_value: RO:0001900 RO:0001901 +is_a: BFO:0000051 ! has part + +[Typedef] +id: RO:0002352 +name: input of +def: "inverse of has input" [] +subset: ro-eco +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0000056 ! participates in +is_a: RO:0002328 ! functionally related to + +[Typedef] +id: RO:0002353 +name: output of +def: "inverse of has output" [] +subset: ro-eco +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0000056 ! participates in +is_a: RO:0002328 ! functionally related to + +[Typedef] +id: RO:0002354 +name: formed as result of +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002353 ! output of + +[Typedef] +id: RO:0002379 +name: spatially coextensive with +def: "x spatially_coextensive_with y if and inly if x and y have the same location" [] +property_value: IAO:0000112 "A lump of clay and a statue" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "This relation is added for formal completeness. It is unlikely to be used in many practical scenarios" xsd:string +is_a: RO:0002131 ! overlaps + +[Typedef] +id: RO:0002404 +name: causally downstream of +def: "inverse of upstream of" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: BFO:0000062 ! preceded by +is_a: RO:0002427 ! causally downstream of or within +inverse_of: RO:0002411 ! causally upstream of + +[Typedef] +id: RO:0002405 +name: immediately causally downstream of +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002087 ! immediately preceded by +is_a: RO:0002404 ! causally downstream of +inverse_of: RO:0002412 ! immediately causally upstream of + +[Typedef] +id: RO:0002410 +name: causally related to +def: "This relation groups causal relations between material entities and causal relations between processes" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000116 "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +is_a: RO:0002609 ! related via dependence to + +[Typedef] +id: RO:0002411 +name: causally upstream of +def: "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_transitive: true +is_a: BFO:0000063 ! precedes +is_a: RO:0002418 ! causally upstream of or within + +[Typedef] +id: RO:0002412 +name: immediately causally upstream of +def: "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q." [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: RO:0002575 RO:0002411 +is_a: RO:0002090 ! immediately precedes +is_a: RO:0002411 ! causally upstream of + +[Typedef] +id: RO:0002418 +name: causally upstream of or within +def: "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q." [] +synonym: "affects" RELATED [] +property_value: IAO:0000116 "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "influences (processual)" xsd:string +is_transitive: true +is_a: RO:0002501 ! causal relation between processes +inverse_of: RO:0002427 ! causally downstream of or within + +[Typedef] +id: RO:0002427 +name: causally downstream of or within +def: "inverse of causally upstream of or within" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +is_transitive: true +is_a: RO:0002501 ! causal relation between processes + +[Typedef] +id: RO:0002428 +name: involved in regulation of +def: "c involved in regulation of p if c is involved in some 'p' and p' regulates some p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +holds_over_chain: RO:0002327 RO:0002211 +holds_over_chain: RO:0002331 RO:0002211 +is_a: RO:0002263 ! acts upstream of +is_a: RO:0002431 ! involved in or involved in regulation of + +[Typedef] +id: RO:0002429 +name: involved in positive regulation of +property_value: IAO:0000117 "Chris Mungall" xsd:string +holds_over_chain: RO:0002327 RO:0002213 +holds_over_chain: RO:0002331 RO:0002213 +is_a: RO:0002428 ! involved in regulation of + +[Typedef] +id: RO:0002430 +name: involved in negative regulation of +property_value: IAO:0000117 "Chris Mungall" xsd:string +holds_over_chain: RO:0002327 RO:0002212 +holds_over_chain: RO:0002331 RO:0002212 +is_a: RO:0002428 ! involved in regulation of + +[Typedef] +id: RO:0002431 +name: involved in or involved in regulation of +def: "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "involved in or reguates" xsd:string +is_a: RO:0002264 ! acts upstream of or within +is_a: RO:0002328 ! functionally related to +is_a: RO:0002500 ! causal agent in + +[Typedef] +id: RO:0002432 +name: enables activity in +def: "c executes activity in d if and only if c enables p and p occurs_in d" [] +property_value: IAO:0000112 "A protein that enables activity in a cytosol." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "executes activity in" xsd:string +holds_over_chain: RO:0002327 BFO:0000066 {http://purl.obolibrary.org/obo/RO_0002581="true"} +is_a: RO:0002131 ! overlaps +is_a: RO:0002328 ! functionally related to + +[Typedef] +id: RO:0002434 +name: interacts with +def: "A relationship that holds between two entities in which the processes executed by the two entities are causally connected." [] +subset: ro-eco +synonym: "in pairwise interaction with" EXACT [] +property_value: http://xmlns.com/foaf/0.1/page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI +property_value: IAO:0000116 "Considering relabeling as 'pairwise interacts with'" xsd:anyURI +property_value: IAO:0000116 "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." xsd:string +property_value: seeAlso http://purl.obolibrary.org/obo/MI_0914 xsd:anyURI +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity +is_symmetric: true + +[Typedef] +id: RO:0002436 +name: molecularly interacts with +def: "An interaction relationship in which the two partners are molecular entities and are executing molecular processes that are directly causally connected." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "binds" xsd:string +property_value: IAO:0000118 "molecularly binds with" xsd:string +property_value: seeAlso ECO:0000353 +property_value: seeAlso http://purl.obolibrary.org/obo/MI_0915 xsd:anyURI +is_symmetric: true +is_a: RO:0002434 ! interacts with + +[Typedef] +id: RO:0002447 +name: phosphorylates +property_value: IAO:0000116 "Axiomatization to GO to be added later" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." xsd:string +is_a: RO:0002436 ! molecularly interacts with + +[Typedef] +id: RO:0002448 +name: molecularly controls +def: "Holds between molecular entities a and b when the execution of a activates or inhibits the activity of b" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002436 ! molecularly interacts with +is_a: RO:0002566 ! causally influences + +[Typedef] +id: RO:0002449 +name: molecularly decreases activity of +def: "Holds between molecules a and b if and only if a executes a process that directly diminishes a process executed by b." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "inhibits" xsd:string +is_a: RO:0002448 ! molecularly controls + +[Typedef] +id: RO:0002450 +name: molecularly increases activity of +def: "Holds between molecules a and b if and only if a executes a process that directly activates a process executed by b." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "activates" xsd:string +is_a: RO:0002448 ! molecularly controls + +[Typedef] +id: RO:0002464 +name: helper property +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." xsd:string + +[Typedef] +id: RO:0002473 +name: composed primarily of +def: "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y." [] +subset: ro-eco +property_value: IAO:0000112 "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/22293552 +property_value: RO:0001900 RO:0001901 +is_a: BFO:0000051 ! has part + +[Typedef] +id: RO:0002479 +name: has part that occurs in +def: "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c." [] +subset: ro-eco +property_value: IAO:0000117 "Chris Mungall" xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000004 ! independent continuant +holds_over_chain: BFO:0000051 BFO:0000066 {http://purl.obolibrary.org/obo/RO_0002581="true"} + +[Typedef] +id: RO:0002481 +name: is kinase activity +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002564 ! molecular interaction relation helper property + +[Typedef] +id: RO:0002500 +name: causal agent in +def: "A relationship between a material entity and a process where the material entity has some causal role that influences the process" [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +is_a: RO:0002595 ! causal relation between material entity and a process +inverse_of: RO:0002608 ! has causal agent + +[Typedef] +id: RO:0002501 +name: causal relation between processes +def: "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0002502 +name: depends on +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: seeAlso BFO:0000169 + +[Typedef] +id: RO:0002506 +name: causal relation between material entities +property_value: IAO:0000116 "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0002507 +name: determined by +def: "s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s." [] +subset: ro-eco +property_value: http://purl.org/dc/elements/1.1/creator "Chris Mungall" xsd:string +property_value: http://purl.org/dc/elements/1.1/creator "Pier Buttigieg" xsd:string +property_value: IAO:0000112 "A coral reef environment is determined by a particular coral reef" xsd:string +property_value: IAO:0000116 "The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/24330602 +property_value: IAO:0000589 "determined by (system to material entity)" xsd:string +domain: RO:0002577 ! system +range: BFO:0000040 ! material entity +is_a: BFO:0000050 ! part of +is_a: RO:0002509 ! determined by part of +is_a: RO:0002559 ! causally influenced by +inverse_of: RO:0002508 ! determines + +[Typedef] +id: RO:0002508 +name: determines +def: "inverse of determined by" [] +subset: ro-eco +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000589 "determines (material entity to system)" xsd:string +is_a: RO:0002566 ! causally influences + +[Typedef] +id: RO:0002509 +name: determined by part of +def: "s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w." [] +subset: ro-eco +property_value: IAO:0000117 "Chris Mungall" xsd:string +domain: RO:0002577 ! system +range: BFO:0000040 ! material entity +holds_over_chain: RO:0002507 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} +is_a: RO:0002131 ! overlaps +is_a: RO:0002506 ! causal relation between material entities + +[Typedef] +id: RO:0002559 +name: causally influenced by +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "causally influenced by (material entity to material entity)" xsd:string +is_a: RO:0002506 ! causal relation between material entities +inverse_of: RO:0002566 ! causally influences + +[Typedef] +id: RO:0002563 +name: interaction relation helper property +property_value: http://xmlns.com/foaf/0.1/page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29 +is_a: RO:0002464 ! helper property + +[Typedef] +id: RO:0002564 +name: molecular interaction relation helper property +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002563 ! interaction relation helper property + +[Typedef] +id: RO:0002566 +name: causally influences +def: "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "causally influences (material entity to material entity)" xsd:string +is_a: RO:0002506 ! causal relation between material entities + +[Typedef] +id: RO:0002578 +name: directly regulates +def: "Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "directly regulates (processual)" xsd:string +property_value: RO:0002575 RO:0002211 +is_a: RO:0002211 ! regulates +is_a: RO:0002412 ! immediately causally upstream of + +[Typedef] +id: RO:0002584 +name: has part structure that is capable of +def: "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p" [] +property_value: IAO:0000112 "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +holds_over_chain: BFO:0000051 RO:0002215 +is_a: RO:0002328 ! functionally related to +is_a: RO:0002595 ! causal relation between material entity and a process + +[Typedef] +id: RO:0002595 +name: causal relation between material entity and a process +def: "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity." [] +property_value: IAO:0000116 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +domain: BFO:0000040 ! material entity +range: BFO:0000015 ! process +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0002596 +name: capable of regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a regulates p." [] +property_value: IAO:0000112 "pyrethroid -> growth" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +holds_over_chain: RO:0002215 RO:0002211 +is_a: RO:0002500 ! causal agent in + +[Typedef] +id: RO:0002597 +name: capable of negatively regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +holds_over_chain: RO:0002215 RO:0002212 +is_a: RO:0002596 ! capable of regulating + +[Typedef] +id: RO:0002598 +name: capable of positively regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p." [] +property_value: IAO:0000112 "renin -> arteriolar smooth muscle contraction" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +holds_over_chain: RO:0002215 RO:0002213 +is_a: RO:0002596 ! capable of regulating + +[Typedef] +id: RO:0002608 +name: has causal agent +def: "Inverse of 'causal agent in'" [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0002609 +name: related via dependence to +def: "A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes." [] +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string + +[Typedef] +id: RO:0002629 +name: directly positively regulates +def: "Process(P1) directly regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "directly positively regulates (process to process)" xsd:string +is_a: RO:0002213 ! positively regulates +is_a: RO:0002578 ! directly regulates + +[Typedef] +id: RO:0002630 +name: directly negatively regulates +def: "Process(P1) directly regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "directly negatively regulates (process to process)" xsd:string +is_a: RO:0002212 ! negatively regulates +is_a: RO:0002578 ! directly regulates + +[Typedef] +id: RO:0003000 +name: produces +def: "a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix." [] +comment: Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue. +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Melissa Haendel" xsd:string +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity +inverse_of: RO:0003001 ! produced by + +[Typedef] +id: RO:0003001 +name: produced by +def: "a produced_by b iff some process that occurs_in b has_output a." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Melissa Haendel" xsd:string +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity + +[Typedef] +id: results_in_developmental_progression_of +name: results in developmental progression of +def: "p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss)." [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: seeAlso Ontology:extensions +domain: GO:0008150 ! biological_process +range: CARO:0000003 ! anatomical structure +is_a: RO:0002324 ! developmentally related to + +[Typedef] +id: results_in_formation_of +name: results in formation of +property_value: IAO:0000112 "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists." xsd:string +property_value: IAO:0000112 "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 GOC:mtg_berkeley_2013 xsd:string +is_a: results_in_developmental_progression_of ! results in developmental progression of +is_a: RO:0002234 ! has output +inverse_of: RO:0002354 ! formed as result of diff --git a/src/ontology/imports/pco_import.owl b/src/ontology/imports/pco_import.owl index 176ce3cf..20946f19 100644 --- a/src/ontology/imports/pco_import.owl +++ b/src/ontology/imports/pco_import.owl @@ -1,19 +1,29 @@ - - + xmlns:foaf="http://xmlns.com/foaf/0.1/" + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" + xmlns:swrl="http://www.w3.org/2003/11/swrl#" + xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#" + xmlns:swrlb="http://www.w3.org/2003/11/swrlb#" + xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" + xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> + + + @@ -21,101 +31,4292 @@ - + - - entity - + + editor preferred term + + The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English) + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + editor preferred term + - + - - - - continuant + + example + + A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + example of usage + + + + + + + + has curation status + PERSON:Alan Ruttenberg + PERSON:Bill Bug + PERSON:Melanie Courtot + OBI_0000281 + has curation status + + + + + + + + definition + + The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions. + 2012-04-05: +Barry Smith + +The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. + +Can you fix to something like: + +A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. + +Alan Ruttenberg + +Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. + +On the specifics of the proposed definition: + +We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. + +Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. + +We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + definition + definition + + + + + + + + editor note + + An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology. + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obfoundry.org/obo/obi> + editor note + + + + + + + + term editor + + Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people + 20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115. + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + term editor + + + + + + + + alternative term + + An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent) + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + alternative term + + + + + + + + definition source + + formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007 + PERSON:Daniel Schober + Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + definition source + + + + + + + + has obsolescence reason + Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification. + PERSON:Alan Ruttenberg + PERSON:Melanie Courtot + has obsolescence reason + + + + + + + + + + + + + + imported from + + For external terms/classes, the ontology from which the term was imported + PERSON:Alan Ruttenberg + PERSON:Melanie Courtot + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + imported from + + + + + + + + + + + + + + OBO foundry unique label + + An alternative name for a class or property which is unique across the OBO Foundry. + The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools . + PERSON:Alan Ruttenberg + PERSON:Bjoern Peters + PERSON:Chris Mungall + PERSON:Melanie Courtot + GROUP:OBO Foundry <http://obofoundry.org/> + OBO foundry unique label + + + + + + + + + + + + + + + + + + + + term replaced by + + Add as annotation triples in the granting ontology + Use on obsolete terms, relating the term to another term that can be used as a substitute + Person:Alan Ruttenberg + Person:Alan Ruttenberg + term replaced by + + + + + + + + + + + + + + + + + + + + An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context. + temporal interpretation + https://github.com/oborel/obo-relations/wiki/ROAndTime + + + + + + + + + + + + + + + + + + + + + + If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL + is a defining property chain axiom + + + + + + + + If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R. + is a defining property chain axiom where second argument is reflexive + + + + + + + + 'anterior end of organism' is-opposite-of 'posterior end of organism' + 'increase in temperature' is-opposite-of 'decrease in temperature' + x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). + is opposite of + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + subset_property + + + + + + + + + + + + + + + + + + + + has_broad_synonym + + + + + + + + database_cross_reference + + + + + + + + has_exact_synonym + + + + + + + + + + + + + + has_obo_format_version + + + + + + + + has_related_synonym + + + + + + + + + + + + + + + + + + + + in_subset + + + + + + + + shorthand + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + is part of + my brain is part of my body (continuant parthood, two material entities) + my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity) + this day is part of this year (occurrent parthood) + a core relation that holds between a part and its whole + Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other. + Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) + +A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'. + part_of + + part of + + + http://www.obofoundry.org/ro/#OBO_REL:part_of + + + + + + + + + + has part + my body has part my brain (continuant parthood, two material entities) + my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity) + this year has part this day (occurrent parthood) + a core relation that holds between a whole and its part + Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part. + Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) + +A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'. + has_part + + has part + + + + + + + + + + + + + + + + + preceded by + x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. + An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other. + is preceded by + preceded_by + http://www.obofoundry.org/ro/#OBO_REL:preceded_by + + preceded by + + + + + + + + + + + + + + + + precedes + x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. + + precedes + + + + + + + + + + + + + + + + + + + occurs in + b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t + occurs_in + unfolds in + unfolds_in + Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant + + occurs in + + + + + + + + site of + [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t + Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant + + contains process + + + + + + + + + + inheres in + this fragility inheres in this vase + this red color inheres in this apple + a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence + A dependent inheres in its bearer at all times for which the dependent exists. + inheres_in + + inheres in + + + + + + + + + bearer of + this apple is bearer of this red color + this vase is bearer of this fragility + a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence + A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist. + bearer_of + is bearer of + + bearer of + + + + + + + + + + + participates in + this blood clot participates in this blood coagulation + this input material (or this output material) participates in this process + this investigator participates in this investigation + a relation between a continuant and a process, in which the continuant is somehow involved in the process + participates_in + participates in + + + + + + + + + + + + + + has participant + this blood coagulation has participant this blood clot + this investigation has participant this investigator + this process has participant this input material (or this output material) + a relation between a process and a continuant, in which the continuant is somehow involved in the process + Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time. + has_participant + http://www.obofoundry.org/ro/#OBO_REL:has_participant + has participant + + + + + + + + + + this red color is a quality of this apple + a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence + A quality inheres in its bearer at all times for which the quality exists. + is quality of + quality_of + quality of + + + + + + + + + + this apple has quality this red color + a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence + A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist. + has_quality + has quality + + + + + + + + + + is location of + my head is the location of my brain + this cage is the location of this rat + a relation between two independent continuants, the location and the target, in which the target is entirely within the location + Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + location_of + + location of + + + + + + + + + + + + + + + contained in + Containment is location not involving parthood, and arises only where some immaterial continuant is involved. + Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition): + Intended meaning: +domain: material entity +range: spatial region or site (immaterial continuant) + + contained_in + + + contained in + + + + + + + + contains + + + contains + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + located in + my brain is located in my head + this rat is located in this cage + a relation between two independent continuants, the target and the location, in which the target is entirely within the location + Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus + Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + located_in + + http://www.obofoundry.org/ro/#OBO_REL:located_in + located in + + + + + + This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation. + + + + + + This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation. + + + + + + + + + + A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B. + dos + 2017-05-24T09:30:46Z + has regulatory component activity + + + + + + + + + + A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B. + dos + 2017-05-24T09:31:01Z + By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'. + has negative regulatory component activity + + + + + + + + + + A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B. + dos + 2017-05-24T09:31:17Z + By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'. + has positive regulatory component activity + + + + + + + + + dos + 2017-05-24T09:44:33Z + A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B. + has component activity + + + + + + + + + w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type. + dos + 2017-05-24T09:49:21Z + has component process + + + + + + + + + + A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function. + dos + 2017-07-19T17:30:36Z + has ligand + + + + + A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function. + GOC:dos + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + David Osumi-Sutherland + + X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) + ends after + + + + + + + + + + David Osumi-Sutherland + starts_at_end_of + X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) + immediately preceded by + + + + + + + + + David Osumi-Sutherland + ends_at_start_of + meets + + + X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) + immediately precedes + + + + + + + + + + + + + + + + + + + + + + x overlaps y if and only if there exists some z such that x has part z and z part of y + http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y) + + + overlaps + + + + + + + + + true + + + + + + + + + + w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type. + The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity. + For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit. + + + has component + + + + + + + + + + + + + + + + + + + process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2. + We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit + Chris Mungall + David Hill + Tanya Berardini + + GO + Regulation precludes parthood; the regulatory process may not be within the regulated process. + regulates (processual) + false + regulates + + + + + + + + + + + + Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2. + Chris Mungall + + negatively regulates (process to process) + negatively regulates + + + + + + + + + + + + + + + + Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2. + Chris Mungall + + positively regulates (process to process) + positively regulates + + + + + + + + + + + mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974) + osteoclast SubClassOf 'capable of' some 'bone resorption' + + A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. + Chris Mungall + has function realized in + + + For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)". + RO_0000053 some (RO_0000054 only ?Y) + + capable of + + + + + + + + + + + + + + + c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p. + Chris Mungall + has function in + RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y)) + capable of part of + + + + + + + + + true + + + + + + + + + + + x actively participates in y if and only if x participates in y and x realizes some active role + Chris Mungall + agent in + actively participates in + + + + + + + + + 'heart development' has active participant some Shh protein + + x has participant y if and only if x realizes some active role that inheres in y + This may be obsoleted and replaced by the original 'has agent' relation + Chris Mungall + has agent + + has active participant + + + + + + + + + + + Chris Mungall + + Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends. + https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 + + A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. + temporally related to + + + + + + + + + + + + + p has direct input c iff c is a participant in p, c is present at the start of p, and the state of c is modified during p. + Chris Mungall + consumes + + has input + + + + + + + + + + + p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p. + Chris Mungall + produces + + has output + + + + + + + + + + + + + c involved in regulation of p if c enables 'p' and p' causally upstream of p + acts upstream of + + + + + + + + + + + + + c acts upstream of or within p if c is enables 'p' and p' causally upstream of or within p + affects + acts upstream of or within + + + + + + + + + + + + p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss). + This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint. + Chris Mungall + results_in_developmental_progression_of + results in developmental progression of + + + + + + + + + + + + an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists. + every "endocardial cushion formation" (GO:0003272) results_in_formation_of some "endocardial cushion" (UBERON:0002062) + + Chris Mungall + GOC:mtg_berkeley_2013 + results_in_formation_of + results in formation of + + + + + + + + + cjm + holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y + causally upstream of, positive effect + + + + + + + + + cjm + holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y + causally upstream of, negative effect + + + + + + + + + + + + + + + + + q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w. + Because part_of is transitive, inheres in is a sub-relation of inheres in part of + Chris Mungall + + + inheres in part of + + + + + + + + + true + + + + + + + + A mereological relationship or a topological relationship + Chris Mungall + Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships + + mereotopologically related to + + + + + + + + A relationship that holds between entities participating in some developmental process (GO:0032502) + Chris Mungall + Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development + developmentally related to + + + + + + + + + + ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity. + Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity. + eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to "ribosome binding". And all three are part_of an eIF2 complex + We would like to say + +if and only if + exists c', p' + c part_of c' and c' capable_of p + and + c capable_of p' and p' part_of p +then + c contributes_to p + +However, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction. + Chris Mungall + http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to + In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. + contributes to + + + + + + + + + + + + + + + + + + a particular instances of akt-2 enables some instance of protein kinase activity + Chris Mungall + catalyzes + executes + has + is catalyzing + is executing + This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized. + This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time. + enables + + + + + + + + Chris Mungall + This is a grouping relation that collects relations used for the purpose of connecting structure and function + functionally related to + + + + + + + + + + + + + this relation holds between c and p when c is part of some c', and c' is capable of p. + Chris Mungall + false + part of structure that is capable of + + + + + + + + + true + + + + + + + + + + + + + + + + + c involved_in p if and only if c enables some process p', and p' is part of p + Chris Mungall + actively involved in + enables part of + involved in + + + + + + + + + + + + + + inverse of enables + Chris Mungall + enabled by + + + + + + + + + + + + inverse of regulates + Chris Mungall + regulated by (processual) + + regulated by + + + + + + + + + inverse of negatively regulates + Chris Mungall + + negatively regulated by + + + + + + + + + inverse of positively regulates + Chris Mungall + + positively regulated by + + + + + + + + + + An organism that is a member of a population of organisms + is member of is a mereological relation between a item and a collection. + is member of + member part of + SIO + + member of + + + + + + + + + + has member is a mereological relation between a collection and an item. + SIO + + has member + + + + + + + + + + inverse of has input + Chris Mungall + + + input of + + + + + + + + + + inverse of has output + Chris Mungall + + + output of + + + + + + + + + Chris Mungall + formed as result of + + + + + + + + + + + + + + + A lump of clay and a statue + x spatially_coextensive_with y if and inly if x and y have the same location + Chris Mungall + This relation is added for formal completeness. It is unlikely to be used in many practical scenarios + spatially coextensive with + + + + + + + + + + + + inverse of upstream of + Chris Mungall + causally downstream of + + + + + + + + + + + + Chris Mungall + immediately causally downstream of + + + + + + + + + + This relation groups causal relations between material entities and causal relations between processes + This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. + +To define causal relations in an activity-flow type network, we make use of 3 primitives: + + * Temporal: how do the intervals of the two occurrents relate? + * Is the causal relation regulatory? + * Is the influence positive or negative + +The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. + +For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. + +For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. + +Each of these 3 primitives can be composed to yield a cross-product of different relation types. + Chris Mungall + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causally related to + + + + + + + + + + + + p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain + Chris Mungall + causally upstream of + + + + + + + + + + + p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q. + Chris Mungall + + immediately causally upstream of + + + + + + + + + + + p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q. + We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2 + Chris Mungall + influences (processual) + affects + causally upstream of or within + + + + + + + + + + inverse of causally upstream of or within + Chris Mungall + + + causally downstream of or within + + + + + + + + + + + + + + + + + + c involved in regulation of p if c is involved in some 'p' and p' regulates some p + Chris Mungall + involved in regulation of + + + + + + + + + + + + + + + + + Chris Mungall + involved in positive regulation of + + + + + + + + + + + + + + + + + Chris Mungall + involved in negative regulation of + + + + + + + + + + + c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p + Chris Mungall + involved in or reguates + involved in or involved in regulation of + + + + + + + + + + + + + + A protein that enables activity in a cytosol. + c executes activity in d if and only if c enables p and p occurs_in d + Chris Mungall + executes activity in + enables activity in + + + + + + + + + true + + + + + + + + + + + A relationship that holds between two entities in which the processes executed by the two entities are causally connected. + Considering relabeling as 'pairwise interacts with' + This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact. + Chris Mungall + Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules. + in pairwise interaction with + + interacts with + http://purl.obolibrary.org/obo/MI_0914 + https://github.com/oborel/obo-relations/wiki/InteractionRelations + + + + + + + + + + An interaction relationship in which the two partners are molecular entities and are executing molecular processes that are directly causally connected. + Chris Mungall + binds + molecularly binds with + molecularly interacts with + + http://purl.obolibrary.org/obo/MI_0915 + + + + + + + + + Axiomatization to GO to be added later + Chris Mungall + An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y. + phosphorylates + + + + + + + + + + + + + + + Holds between molecular entities a and b when the execution of a activates or inhibits the activity of b + Chris Mungall + molecularly controls + + + + + + + + + + + + + + Holds between molecules a and b if and only if a executes a process that directly diminishes a process executed by b. + Chris Mungall + inhibits + molecularly decreases activity of + + + + + + + + + + + + + + Holds between molecules a and b if and only if a executes a process that directly activates a process executed by b. + Chris Mungall + activates + molecularly increases activity of + + + + + + + + + Chris Mungall + This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning. + helper property + + + + + + + + + 'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate' + x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y. + Chris Mungall + + + + composed primarily of + + + + + + + + + + + + + + p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c. + Chris Mungall + + has part that occurs in + + + + + + + + + true + + + + + + + + + Chris Mungall + is kinase activity + + + + + + + + + + A relationship between a material entity and a process where the material entity has some causal role that influences the process + + causal agent in + + + + + + + + + + + p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q. + Chris Mungall + + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causal relation between processes + + + + + + + + Chris Mungall + depends on + + + + + + + + + + + + The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch + Chris Mungall + + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causal relation between material entities + + + + + + + + + + + + + + A coral reef environment is determined by a particular coral reef + s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s. + The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future + Chris Mungall + + determined by (system to material entity) + Chris Mungall + Pier Buttigieg + + determined by + + + + + + + + + inverse of determined by + Chris Mungall + determines (material entity to system) + + + determines + + + + + + + + + + + + + + + + s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w. + Chris Mungall + + determined by part of + + + + + + + + + true + + + + + + + + + + Chris Mungall + + causally influenced by (material entity to material entity) + causally influenced by + + + + + + + + + Chris Mungall + interaction relation helper property + + https://github.com/oborel/obo-relations/wiki/InteractionRelations + + + + + + + + + Chris Mungall + molecular interaction relation helper property + + + + + + + + + + + + + + + + + + + Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b + Chris Mungall + + causally influences (material entity to material entity) + causally influences + + + + + + + + + + Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2. + Chris Mungall + + directly regulates (processual) + + directly regulates + + + + + + + + + + + + + + gland SubClassOf 'has part structure that is capable of' some 'secretion by cell' + s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p + Chris Mungall + has part structure that is capable of + + + + + + + + + + + A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + Chris Mungall + + causal relation between material entity and a process + + + + + + + + + + + + + pyrethroid -> growth + Holds between c and p if and only if c is capable of some activity a, and a regulates p. + + capable of regulating + + + + + + + + + + + + + Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p. + + capable of negatively regulating + + + + + + + + + + + + + renin -> arteriolar smooth muscle contraction + Holds between c and p if and only if c is capable of some activity a, and a positively regulates p. + + capable of positively regulating + + + + + + + + + Inverse of 'causal agent in' + + has causal agent + + + + + + + + A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + related via dependence to + + + + + + + + + + Process(P1) directly regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2. + + directly positively regulates (process to process) + directly positively regulates + + + + + + + + + + Process(P1) directly regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2. + + directly negatively regulates (process to process) + directly negatively regulates + + + + + + + + + + + + + + + + + + a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix. + Melissa Haendel + + Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue. + produces + + + + + + + + + + + a produced_by b iff some process that occurs_in b has_output a. + Melissa Haendel + + produced by + + + + + + + + + + + + + entity + + + + + + + + + + + + + + + + An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts. + continuant + + + + + + + + + + + + + + + An entity that has temporal parts and that happens, unfolds or develops through time. + occurrent + + + + + + + + + + + A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything. + b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]) + independent continuant + + + + + b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]) + + + + + + + + + + spatial region + + + + + + + + + An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. + p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) + process + + + + + p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) + + + + + + + + + + quality + + + + + + + + + + A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same. + b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n &gt; 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i &lt; j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004]) + b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]) + specifically dependent continuant + + + + + b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]) + + + + + + + + + + object aggregate + + + + + + + + + site + + + + + + + + + A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time. + b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001]) + + generically dependent continuant + + + + + + + + + + + + + + + + An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. + material entity + + + + + + + + + + + + + + + immaterial entity + + + + + + + + + + anatomical structure + + + + + + + + + + material anatomical entity + + + + + + + + + + cell part (CARO) + cell part + + + + + + + + + Material anatomical entity that is a member of an individual species or is a viral or viroid particle. + organism or virus + Melissa Haendel + 9/18/11 + organism or virus or viroid + + + + + + + + + + cell + + + + + + + + + + + + + + + + + + + + + + + + + + A material entity which determines an environmental system. + environmental feature + + + + + A material entity which determines an environmental system. + DOI:10.1186/2041-1480-4-43 + NM:nm + ORCID:0000-0002-4366-3088 + + + + + + + + + A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system. + portion of environmental material + environmental material + + + + + A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system. + DOI:10.1186/2041-1480-4-43 + MA:ma + ORCID:0000-0002-4366-3088 + URL:http://ontology.buffalo.edu/smith/articles/niches.html + + + + + + + + + A system which has the disposition to environ one or more material entities. + environment + environmental system + + + + + A system which has the disposition to environ one or more material entities. + DOI:10.1186/2041-1480-4-43 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An anthropogenic environment is an environmental system which is the product of human activity. + anthropogenic environment + + + + + + + + + + + + + + + + + + + + + + + + An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition. + natural environment + + + + + An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition. + https://en.wikipedia.org/wiki/Anthropization + https://en.wikipedia.org/wiki/Natural_environment + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A process during which a natural environmental system is altered by human action. + anthropization + anthropisation + + + + + A process during which a natural environmental system is altered by human action. + https://en.wikipedia.org/wiki/Anthropization + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system which is determined by materials bearing roughly homogeneous qualities. + environmental system determined by a quality + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system within which an environmental material strongly influences the system's composition and properties. + environmental system determined by a material + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system which is determined by a living organism. + host-associated environment + environmental system determined by an organism + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system determined by an animal. + animal environment + Metazoan-associated environment + animal-associated environment + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system determined by part of a living or dead animal, or a whole small animal. + environment associated with an animal part or small animal + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system determined by part of a living or dead plant, or a whole small plant. + environment associated with a plant part or small plant + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system which includes both living and non-living components. + ecosystem + + + + + An environmental system which includes both living and non-living components. + https://en.wikipedia.org/wiki/Ecosystem + + + + + + + + + + + + + + + + + + + + + + + A process in which includes the components of an environmental system as participants. + environmental system process + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental process which is driven by the action of humans. + anthropogenic environmental process + + + + + + + + + molecular process + molecular_function + + + + + + + + + catalytic activity + + + + + + + + receptor activity + + + + + + + + + + nucleus + + + + + + + + + Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. + biological process + physiological process + single organism process + single-organism process + biological_process + + + + + Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. + GOC:go_curators + GOC:isa_complete + + + + + + + + + + + + true + + + kinase activity + + + + + + + + + transferase activity + + + + + + + + + transferase activity, transferring phosphorus-containing groups + + + + + + + + + + cell projection + + + + + + + + + + cell part + + + + + + + + + + + + + + + data item + + + + + + + + + information content entity + + + + + + + + + + + + + + + + + + + + + + + + curation status specification + + The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. + Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting) + PERSON:Bill Bug + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + OBI_0000266 + curation status specification + + + + + + + + + data about an ontology part is a data item about a part of an ontology, for example a term + Person:Alan Ruttenberg + data about an ontology part + + + + + + + + + + + + + + + + + + + + obsolescence reason specification + + The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. + The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology. + PERSON: Alan Ruttenberg + PERSON: Melanie Courtot + obsolescence reason specification + + + + + + + + + + + + + + + + + + The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are "natural kinds" and the latter arbitrary collections of entities. + A denotator type indicates how a term should be interpreted from an ontological perspective. + Alan Ruttenberg + Barry Smith, Werner Ceusters + denotator type + + + + + + + + + all + root + + + + + all + + + + + + all + + + + + + + + + + Teleostomi + + + + + + + + + bony vertebrates + Euteleostomi + + + + + bony vertebrates + + + + + + + + + + biota + cellular organisms + + + + + biota + + + + + + biota + + + + + + + + + + Dipnotetrapodomorpha + + + + + + + + + Boreotheria + Boreoeutheria + + + + + Boreotheria + + + + + + + + + + Homo/Pan/Gorilla group + Homininae + + + + + Homo/Pan/Gorilla group + + + + + + + + + + eucaryotes + eukaryotes + Eucarya + Eucaryotae + Eukarya + Eukaryotae + eukaryotes + Eukaryota + + + + + eucaryotes + + + + + + eucaryotes + + + + + + eukaryotes + + + + + + eukaryotes + + + + + + Eucarya + + + + + + Eucarya + + + + + + Eucaryotae + + + + + + Eucaryotae + + + + + + Eukarya + + + + + + Eukarya + + + + + + Eukaryotae + + + + + + Eukaryotae + + + + + + eukaryotes + + + + + + eukaryotes + + + + + + + + + + Euarchontoglires + + + + + + + + + Anthropoidea + Simiiformes + + + + + Anthropoidea + + + + + + + + + + ape + apes + Hominoidea + + + + + ape + + + + + + apes + + + + + + + + + + tetrapods + Tetrapoda + + + + + tetrapods + + + + + + + + + + amniotes + Amniota + + + + + amniotes + + + + + + + + + + Theria + Theria <Mammalia> + + + + + Theria + + + + + + + + + + Fungi/Metazoa group + opisthokonts + Opisthokonta + + + + + Fungi/Metazoa group + + + + + + opisthokonts + + + + + + + + + + metazoans + multicellular animals + Animalia + animals + Metazoa + + + + + metazoans + + + + + + multicellular animals + + + + + + Animalia + + + + + + animals + + + + + + + + + + Bilateria + + + + + + + + + deuterostomes + Deuterostomia + + + + + deuterostomes + + + + + + + + + + Haplorrhini + + + + + + + + + mammals + mammals + Mammalia + + + + + mammals + + + + + + mammals + + + + + + + + + + Eumetazoa + + + + + + + + + chordates + chordates + Chordata + + + + + chordates + + + + + + chordates + + + + + + + + + + Vertebrata + vertebrates + vertebrates + Vertebrata <Metazoa> + + + + + Vertebrata + + + + + + vertebrates + + + + + + vertebrates + + + + + + + + + + Gnathostomata + jawed vertebrates + Gnathostomata <vertebrate> + + + + + Gnathostomata + + + + + + jawed vertebrates + + + + + + + + + + Sarcopterygii + + + + + + + + + Craniata + Craniata <chordata> + + + + + Craniata + + + + + + + + + + eutherian mammals + placental mammals + placentals + Placentalia + placentals + Eutheria + + + + + eutherian mammals + + + + + + placental mammals + + + + + + placentals + + + + + + Placentalia + + + + + + placentals + + + + + + + + + + primate + Primata + primates + Primates + + + + + primate + + + + + + Primata + + + + + + primates + + + + + + + + + + Catarrhini + + + + + + + + + great apes + Pongidae + Hominidae + + + + + great apes + + + + + + Pongidae + + + + + + + + + + humans + Homo + + + + + humans + + + + + + + + + + human + man + humans + Homo sapiens + + + + + human + + + + + + man + + + + + + + + + + A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities + quality (PATO) + trait + quality + + + + + A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities + PATOC:GVG + + + + + + + + + A composite chromatic quality composed of hue, saturation and intensity parts. + colour + relative color + color + + + + + A composite chromatic quality composed of hue, saturation and intensity parts. + PATOC:GVG + + + + + + + + + + A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. + morphology + + + + + + + + + shape + + + + + + + + + qualitative + + + + + + + + + A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. + deviation(from_normal) + + + + + + + + + A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. + size + + + + + + + + + structure + + + + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time. + rate + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time. + PATOC:melissa + + + + + + + + + A color hue with high wavelength of the long-wave end of the visible spectrum, evoked in the human observer by radiant energy with wavelengths of approximately 630 to 750 nanometers. + red + + + + + A color hue with high wavelength of the long-wave end of the visible spectrum, evoked in the human observer by radiant energy with wavelengths of approximately 630 to 750 nanometers. + Dictionary:http://dictionary.reference.com/ + + + + + + + + + branched + + + + + + + + + + A size quality which is relatively low. + hypoplasia + underdeveloped + reduced + small + tiny + decreased size + + + + + + + + + A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. + relational physical quality + physical quality + + + + + A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. + PATOC:GVG + + + + + + + + + linear + + + + + + + + + A quality which inheres in an process. + quality of a process + quality of occurrent + quality of process + relational quality of occurrent + process quality + + + + + A quality which inheres in an process. + PATOC:GVG + + + + + + + + + A quality which inheres in a continuant. + monadic quality of a continuant + multiply inhering quality of a physical entity + quality of a continuant + quality of a single physical entity + quality of an object + quality of continuant + monadic quality of an object + monadic quality of continuant + physical object quality + + + + + A quality which inheres in a continuant. + PATOC:GVG + + + + + + + + + A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation. + electromagnetic (EM) radiation quality + + + + + A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation. + Wikipedia:http://en.wikipedia.org/wiki/Electromagnetic_radiation + + + + + + + + + An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light. + optical quality + + + + An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light. + PATOC:GVG + - + - - - occurrent + + + A biological sex quality inhering in a population of multiple sexes. + mixed sex + + + + A biological sex quality inhering in a population of multiple sexes. + MGED:MGED + - + - - - - independent continuant + + + A quality inhering in a population by virtue of the proportion of its members that are ill at a given time. + morbidity + + + + A quality inhering in a population by virtue of the proportion of its members that are ill at a given time. + PATOC:GVG + - + - - - specifically dependent continuant + + + A quality that inheres in an bearer by virtue of how that bearer interacts with radiation. + radiation quality + + + + A quality that inheres in an bearer by virtue of how that bearer interacts with radiation. + PATOC:GVG + - + - - - object aggregate + + + A quality that inheres in an entire population or part of a population. + population quality + + + + A quality that inheres in an entire population or part of a population. + PATOC:GVG + - + - - - material entity + + + branchiness - + - - - organism or virus or viroid + + + physical quality of a process - + - - quality + + + laminar - + - - - physical object quality + + + A quality that has a value that is decreased compared to normal or average. + decreased quality - + - + - population quality + + A quality of an object that has a value that is decreased compared to normal or average. + decreased object quality @@ -123,8 +4324,37 @@ + + + + + + + + + + 2 + + + + + + + + + + + + Examples include: population, community, species (meaning the collection of organisms that makes up a species, not the taxonomic rank), and family. + + A material entity that consists of two or more organisms, viruses, or viroids. + A material entity that consists of two or more organisms, viruses, or viroids. + group of organism + organism collection + May be of the same or different species. + collection of organisms collection of organisms @@ -134,30 +4364,244 @@ + + This a general term that can include every organism of a species living in an area or any subset of them. Subclasses can be more specific as needed. + + A collection of organisms, all of the same species, that live in the same place. + ISBN:0878932739 + It is sometimes difficult to define the physical boundaries of a population. In the case of sexually reproducing organisms, the individuals within a population have the potential to reproduce with one another during the course of their lifetimes. 'Community', as often used to describe a group of humans, is a type of population. + +Classes for population already exist in IDO ('organism population', IDO_0000509) and OBI ('population', OBI_0000181). The definitions should be standardized across OBO Foundry ontologies and only one term used. population of organisms + + + + + + + + + + 2 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A community of at least two different species, living in a particular area. Must have at least two populations of different species as members. + Not sure if the equivalancy axiom specifies that both populations are located in the same site. + multispecies community + ISBN:0865423504 + Ecological community is defined broadly here, but includes both ecological interactions (inherited from parent term community) and spatial co-existence. It may be used to describe every organisms living in an area, but is often used to refer only to organisms of a particular taxon or guild (e.g., the plant community, the insect community, the herbivore community). The word community, as it often used to describe a group of humans living together, is a type of single-species collection of organisms, not an ecological community. + ecological community + + + + - + + + + + + + + + + + + + + + + + + + A quality that inheres in a biological population. + See Chris's comments on population qualities at: http://code.google.com/p/popcomm-ontology/issues/detail?id=4. These may not belong under BFO:quality. May be better to call them population characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2. + Includes qualities like population size, population growth rate, carrying capacity, immigration rate, emigration rate, fecundity, and death rate. A population quality may depend on the qualities of individual organisms in the population, but cannot be measured or described for a single organism. This term may be replaced by a PATO term. quality of a population + + + + + + + + + + + + + + + + + + + + + + + A quality that inheres in a community. + These may not belong under BFO:quality. May be better to call them community characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2. + Includes qualities like diversity, species richness, stability, resilience, community structure, number of trophic levels. A community quality may depend on the qualities of individual organism in the community, but cannot be measured or described for a single individual. + quality of an ecological community + + + + + + + + + + A collection of organisms that has as parts every organism of given species and no organisms of any other species. + At the moment there is no way to specify in an OWL axiom that the collection includes every individual of a species. This should be added, if possible. + This term is neutral with respect to which organisms are included in a species. Membership will depend on the species concept and the taxonomic assertions used to define the species. These criteria must be specified by the user. + species as a collection of organisms + + + + + + + + + + + + + + + + + 1 + + + + + + + 2 + + + + + + + A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species. + collection of organisms of the same species single-species collection of organisms + + + + + + + + + + + + + + 2 + + + + + + + + + + + + + + A collection of organisms of the same species that has as members only humans. + human community + human population + collection of humans + + + + + + + + + + A collection of organisms of the same species whose members are all either genealogically related to each other or have mated with each other. + Biological or social relations are covered by RO_0002437 (biotically interacts with), but that relations does provide an easy way to specify that two entities are interacting with each other (participating in the same interaction). Until that axiom is specified, the logical definition of this term is incomplete. + These relations can include shared values, occupying the same spatial regkion. A community be be a single species collection of organsisms (as in a human community, which is also a type of population) or a or multi-species collection of organisms (as in an ecological community). + community + + + + + + + + + + A collection of organisms that consists of two or more organisms from at least two species. + Need to add axiom to specify that it has at a mimum members of two different species, but not sure how to specify that. Can't say "('has member' only ('member of' min 2 'species as a collection of organisms'))". + + multi-species collection of organisms + + + + @@ -170,11 +4614,1374 @@ + + A material entity that is one or more organisms, viruses or viroids. organismal entity + + + + + + + + A plant structure (PO:0005679) which is a whole organism. + genet (broad) + ramet (broad) + planta entera (Spanish, exact) + 植物体全体 (Japanese, exact) + bush (narrow) + frutex (narrow) + frutices (narrow) + gametophyte (narrow) + herb (narrow) + liana (narrow) + prothalli (narrow) + prothallium (narrow) + prothallus (narrow) + seedling (narrow) + shrub (narrow) + sporophyte (narrow) + suffrutex (narrow) + suffrutices (narrow) + tree (narrow) + vine (narrow) + woody clump (narrow) + clonal colony (related) + colony (related) + whole plant + + + + + + + + + An anatomical structure that is or was part of a plant, or was derived from a part of a plant. + estructura vegetal (Spanish, exact) + 植物 構造 (Japanese, exact) + plant structure + + + + + + + + + An anatomical entity that is or was part of a plant. + entidad anat&#243mica vegetal (Spanish, exact) + 植物 解剖学（形態）的実体 (Japanese, exact) + plant anatomical entity + + + + + + + + + A material entity consisting of multiple components that are causally integrated. + May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43 + Chris Mungall + http://www.jbiomedsem.com/content/4/1/43 + system + + + + + + + + + Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. + anatomical entity + + + + + + + + + + + + + + + + + + + + + + + + + + + + + example to be eventually removed + + + + + + + + + The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job + Person:Alan Ruttenberg + failed exploratory term + + + + + + + + + Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete. + metadata complete + + + + + + + + + term created to ease viewing/sort terms for development purpose, and will not be included in a release + organizational term + + + + + + + + + + Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release." + ready for release + + + + + + + + + Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors. + metadata incomplete + + + + + + + + + Nothing done yet beyond assigning a unique class ID and proposing a preferred term. + uncurated + + + + + + + + + + All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor. + pending final vetting + + + + + + + + + Core is an instance of a grouping of terms from an ontology or ontologies. It is used by the ontology to identify main classes. + PERSON: Alan Ruttenberg + PERSON: Melanie Courtot + core + + + + + + + + + placeholder removed + + + + + + + + + An editor note should explain what were the merged terms and the reason for the merge. + terms merged + + + + + + + + + This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use. + term imported + + + + + + + + + This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created. + term split + + + + + + + + + Hard to give a definition for. Intuitively a "natural kind" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents. + Alan Ruttenberg + A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf + universal + + + + + + + + + A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal + "definitions", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal. + Alan Ruttenberg + defined class + + + + + + + + + A named class expression is a logical expression that is given a name. The name can be used in place of the expression. + named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions + Alan Ruttenberg + named class expression + + + + + + + + + Terms with this status should eventually replaced with a term from another ontology. + Alan Ruttenberg + group:OBI + to be replaced with external ontology term + + + + + + + + + + A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues. + Alan Ruttenberg + group:OBI + requires discussion + + + + + + + + + +## Elucidation + +This is used when the statement/axiom is assumed to hold true 'eternally' + +## How to interpret (informal) + +First the "atemporal" FOL is derived from the OWL using the standard +interpretation. This axiom is temporalized by embedding the axiom +within a for-all-times quantified sentence. The t argument is added to +all instantiation predicates and predicates that use this relation. + +## Example + + Class: nucleus + SubClassOf: part_of some cell + + forall t : + forall n : + instance_of(n,Nucleus,t) + implies + exists c : + instance_of(c,Cell,t) + part_of(n,c,t) + +## Notes + +This interpretation is *not* the same as an at-all-times relation + + + axiom holds for all times + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z + infer input from direct reg + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + GP(X) part_of complex(Y) enables MF(Z) -> X contributes_to Z + contrib to MF + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z), +e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity' + enabling an MF enables its parts + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true + GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction' + involved in BP + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + From ligand activity to has_ligand + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to "... -> overlaps" + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this. + inferring direct reg edge from input to regulatory subfunction + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + inferring direct neg reg edge from input to regulatory subfunction + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + inferring direct positive reg edge from input to regulatory subfunction + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + From has_ligand to ligand activity + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + effector input is compound function input + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Input of effector is input of its parent MF + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + if effector directly regulates X, its parent MF directly regulates X + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + if effector directly positively regulates X, its parent MF directly positively regulates X + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + if effector directly negatively regulates X, its parent MF directly negatively regulates X + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - + diff --git a/src/ontology/imports/pco_terms.txt b/src/ontology/imports/pco_terms.txt new file mode 100644 index 00000000..b0b46e12 --- /dev/null +++ b/src/ontology/imports/pco_terms.txt @@ -0,0 +1,4 @@ +PCO:0000000 +PCO:0000001 +PCO:0000002 + diff --git a/src/ontology/imports/ro_import.json b/src/ontology/imports/ro_import.json index fc2dd078..460bee9c 100644 --- a/src/ontology/imports/ro_import.json +++ b/src/ontology/imports/ro_import.json @@ -1,161 +1,268 @@ { "graphs" : [ { "nodes" : [ { - "id" : "http://purl.obolibrary.org/obo/CARO_0000006", + "id" : "http://purl.obolibrary.org/obo/GO_0003674", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/caro.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "molecular process" } ] }, "type" : "CLASS", - "lbl" : "material anatomical entity" + "lbl" : "molecular_function" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0003674", + "id" : "http://purl.obolibrary.org/obo/RO_0002331", + "meta" : { + "definition" : { + "val" : "c involved_in p if and only if c enables some process p', and p' is part of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Involved_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "enables part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "actively involved in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002211", "meta" : { + "definition" : { + "val" : "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Hill" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Regulation precludes parthood; the regulatory process may not be within the regulated process." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Tanya Berardini" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GO" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "molecular process" + "val" : "regulates (processual)" } ] }, + "type" : "PROPERTY", + "lbl" : "regulates" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000402", "type" : "CLASS", - "lbl" : "molecular_function" + "lbl" : "branched" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000015", + "id" : "http://purl.obolibrary.org/obo/RO_0002212", "meta" : { "definition" : { - "val" : "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.", + "val" : "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", "xrefs" : [ ] - } + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "negatively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] }, - "type" : "CLASS", - "lbl" : "process" + "type" : "PROPERTY", + "lbl" : "negatively regulates" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0005634", + "id" : "http://purl.obolibrary.org/obo/RO_0002333", "meta" : { + "definition" : { + "val" : "inverse of enables", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/go.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "nucleus" + "type" : "PROPERTY", + "lbl" : "enabled by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002090", + "id" : "http://purl.obolibrary.org/obo/RO_0002450", "meta" : { + "definition" : { + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly increases activity of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "ends_at_start_of" + "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "meets" + "val" : "activates" } ] }, "type" : "PROPERTY", - "lbl" : "immediately precedes" + "lbl" : "activity directly positively regulates activity of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000052", + "id" : "http://purl.obolibrary.org/obo/RO_0002448", "meta" : { "definition" : { - "val" : "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence", + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.", "xrefs" : [ ] }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly controls", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this red color inheres in this apple" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "activity directly regulates activity of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002327", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is executing" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "A dependent inheres in its bearer at all times for which the dependent exists." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this fragility inheres in this vase" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is catalyzing" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "inheres in" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "inheres_in" + "val" : "catalyzes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "a particular instances of akt-2 enables some instance of protein kinase activity" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "inheres in" + "lbl" : "enables" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000056", + "id" : "http://purl.obolibrary.org/obo/RO_0002449", "meta" : { "definition" : { - "val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process", + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.", "xrefs" : [ ] }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly decreases activity of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this input material (or this output material) participates in this process" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this investigator participates in this investigation" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "participates_in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this blood clot participates in this blood coagulation" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "participates in" + "val" : "inhibits" } ] }, "type" : "PROPERTY", - "lbl" : "participates in" + "lbl" : "activity directly negatively regulates activity of" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0044464", + "id" : "http://purl.obolibrary.org/obo/RO_0002328", "meta" : { + "definition" : { + "val" : "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/go.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This is a grouping relation that collects relations used for the purpose of connecting structure and function" } ] }, - "type" : "CLASS", - "lbl" : "cell part" + "type" : "PROPERTY", + "lbl" : "functionally related to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000053", + "id" : "http://purl.obolibrary.org/obo/RO_0002329", "meta" : { "definition" : { - "val" : "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", + "val" : "this relation holds between c and p when c is part of some c', and c' is capable of p.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "bearer of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this vase is bearer of this fragility" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "bearer_of" - }, { + "val" : "false" + } ] + }, + "type" : "PROPERTY", + "lbl" : "part of structure that is capable of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002604", + "meta" : { + "definition" : { + "val" : "x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x).", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this apple is bearer of this red color" + "val" : "'anterior end of organism' is-opposite-of 'posterior end of organism'" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "is bearer of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'increase in temperature' is-opposite-of 'decrease in temperature'" } ] }, "type" : "PROPERTY", - "lbl" : "bearer of" + "lbl" : "is opposite of" }, { "id" : "http://purl.obolibrary.org/obo/CL_0000000", "meta" : { @@ -166,10 +273,6 @@ }, "type" : "CLASS", "lbl" : "cell" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0008150", - "type" : "CLASS", - "lbl" : "biological_process" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000050", "meta" : { @@ -178,9 +281,6 @@ "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" }, { @@ -192,18 +292,48 @@ }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "is part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000004" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this day is part of this year (occurrent parthood)" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000017" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000019" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000031" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." @@ -212,318 +342,2629 @@ "type" : "PROPERTY", "lbl" : "part of" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0030000", - "type" : "CLASS", - "lbl" : "biological entity" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016301", - "type" : "CLASS", - "lbl" : "kinase activity" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016740", - "type" : "CLASS", - "lbl" : "transferase activity" - }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000051", + "id" : "http://purl.obolibrary.org/obo/RO_0002323", "meta" : { "definition" : { - "val" : "a core relation that holds between a whole and its part", + "val" : "A mereological relationship or a topological relationship", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "has part" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my body has part my brain (continuant parthood, two material entities)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "mereotopologically related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002202", + "meta" : { + "definition" : { + "val" : "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has_part" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This is the transitive form of the develops from relation" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this year has part this day (occurrent parthood)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "PROPERTY", - "lbl" : "has part" + "lbl" : "develops from" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0000014", + "id" : "http://purl.obolibrary.org/obo/RO_0002324", "meta" : { + "definition" : { + "val" : "A relationship that holds between entities participating in some developmental process (GO:0032502)", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/caro.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "cell part (CARO)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" } ] }, - "type" : "CLASS", - "lbl" : "cell part" + "type" : "PROPERTY", + "lbl" : "developmentally related to" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000004", + "id" : "http://purl.obolibrary.org/obo/RO_0002566", "meta" : { "definition" : { - "val" : "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.", + "val" : "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b", "xrefs" : [ ] - } + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influences (material entity to material entity)" + } ] }, - "type" : "CLASS", - "lbl" : "independent continuant" + "type" : "PROPERTY", + "lbl" : "causally influences" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002222", + "id" : "http://purl.obolibrary.org/obo/RO_0002203", "meta" : { + "definition" : { + "val" : "inverse of develops from", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" } ] }, "type" : "PROPERTY", - "lbl" : "temporally related to" + "lbl" : "develops into" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002086", + "id" : "http://purl.obolibrary.org/obo/RO_0002447", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Axiomatization to GO to be added later" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "ends after" + "lbl" : "phosphorylates" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002087", + "id" : "http://purl.obolibrary.org/obo/PATO_0000001", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "starts_at_end_of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "quality (PATO)" + } ] + }, + "type" : "CLASS", + "lbl" : "quality" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000116", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" } ] }, "type" : "PROPERTY", - "lbl" : "immediately preceded by" + "lbl" : "editor note" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000057", + "id" : "http://purl.obolibrary.org/obo/IAO_0000117", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "term editor" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000114", + "type" : "PROPERTY", + "lbl" : "has curation status" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016740", + "type" : "CLASS", + "lbl" : "transferase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000115", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "definition" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000051", "meta" : { "definition" : { - "val" : "a relation between a process and a continuant, in which the continuant is somehow involved in the process", + "val" : "a core relation that holds between a whole and its part", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/source", - "val" : "http://www.obofoundry.org/ro/#OBO_REL:has_participant" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this blood coagulation has participant this blood clot" + "val" : "my body has part my brain (continuant parthood, two material entities)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "has participant" + "val" : "has part" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has_participant" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." + "val" : "has_part" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this process has participant this input material (or this output material)" + "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this investigation has participant this investigator" + "val" : "this year has part this day (occurrent parthood)" } ] }, "type" : "PROPERTY", - "lbl" : "has participant" + "lbl" : "has part" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000066", + "id" : "http://purl.obolibrary.org/obo/IAO_0000112", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "example of usage" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002608", "meta" : { "definition" : { - "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "val" : "Inverse of 'causal agent in process'", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "occurs_in" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", - "val" : "http://purl.obolibrary.org/obo/bfo.owl" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "unfolds_in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "unfolds in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "occurs in" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, "type" : "PROPERTY", - "lbl" : "occurs in" + "lbl" : "process has causal agent" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0001010", - "type" : "CLASS", - "lbl" : "organism or virus or viroid" + "id" : "http://purl.obolibrary.org/obo/IAO_0000111", + "type" : "PROPERTY", + "lbl" : "editor preferred term" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "id" : "http://purl.obolibrary.org/obo/IAO_0000118", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "alternative term" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000119", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "definition source" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002286", "meta" : { "definition" : { - "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "val" : "Inverse of developmentally preceded by", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "site of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally succeeded by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002563", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", - "val" : "http://purl.obolibrary.org/obo/bfo.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" } ] }, "type" : "PROPERTY", - "lbl" : "contains process" + "lbl" : "interaction relation helper property" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016772", - "type" : "CLASS", - "lbl" : "transferase activity, transferring phosphorus-containing groups" + "id" : "http://purl.obolibrary.org/obo/RO_0002564", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecular interaction relation helper property" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000002", + "id" : "http://purl.obolibrary.org/obo/RO_0002559", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influenced by (material entity to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally influenced by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001900", "meta" : { "definition" : { - "val" : "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.", + "val" : "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.", "xrefs" : [ ] - } + }, + "basicPropertyValues" : [ { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/ROAndTime" + } ] }, - "type" : "CLASS", - "lbl" : "continuant" + "type" : "PROPERTY", + "lbl" : "temporal interpretation" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000003", + "id" : "http://purl.obolibrary.org/obo/RO_0001901", "meta" : { "definition" : { - "val" : "An entity that has temporal parts and that happens, unfolds or develops through time.", + "val" : "\n\n## Elucidation\n\nThis is used when the statement/axiom is assumed to hold true 'eternally'\n\n## How to interpret (informal)\n\nFirst the \"atemporal\" FOL is derived from the OWL using the standard\ninterpretation. This axiom is temporalized by embedding the axiom\nwithin a for-all-times quantified sentence. The t argument is added to\nall instantiation predicates and predicates that use this relation.\n\n## Example\n\n Class: nucleus\n SubClassOf: part_of some cell\n\n forall t :\n forall n :\n instance_of(n,Nucleus,t)\n implies\n exists c :\n instance_of(c,Cell,t)\n part_of(n,c,t)\n\n## Notes\n\nThis interpretation is *not* the same as an at-all-times relation\n\n", "xrefs" : [ ] } }, - "type" : "CLASS", - "lbl" : "occurrent" + "type" : "INDIVIDUAL", + "lbl" : "axiom holds for all times" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000062", + "id" : "http://purl.obolibrary.org/obo/RO_0002434", "meta" : { "definition" : { - "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "val" : "A relationship that holds between two entities in which the processes executed by the two entities are causally connected.", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "in pairwise interaction with", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "is preceded by" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." + "val" : "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." }, { - "pred" : "http://purl.org/dc/elements/1.1/source", - "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "preceded_by" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "preceded by" + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0914" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Considering relabeling as 'pairwise interacts with'" } ] }, "type" : "PROPERTY", - "lbl" : "preceded by" + "lbl" : "interacts with" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000040", + "id" : "http://purl.obolibrary.org/obo/RO_0002314", "meta" : { "definition" : { - "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.", + "val" : "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.", "xrefs" : [ ] - } + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + } ] }, - "type" : "CLASS", - "lbl" : "material entity" + "type" : "PROPERTY", + "lbl" : "inheres in part of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002436", + "meta" : { + "definition" : { + "val" : "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/ECO_0000353" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "molecularly binds with" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0915" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "binds" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecularly interacts with" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", + "type" : "PROPERTY", + "lbl" : "has_related_synonym" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000125", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "pending final vetting" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000040", + "meta" : { + "definition" : { + "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "material entity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002430", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in negative regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002431", + "meta" : { + "definition" : { + "val" : "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "OWL does not allow defining object properties via a Union" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "involved in or reguates" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in or involved in regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002432", + "meta" : { + "definition" : { + "val" : "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.", + "xrefs" : [ "GOC:cjm", "GOC:dos" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "enables activity in", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A protein that enables activity in a cytosol." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes activity in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is active in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002305", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + }, { + "pred" : "http://purl.org/dc/terms/creator", + "val" : "cjm" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of, negative effect" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002427", + "meta" : { + "definition" : { + "val" : "inverse of causally upstream of or within", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally downstream of or within" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000141", + "type" : "CLASS", + "lbl" : "structure" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002428", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some p' and p' regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0008150", + "type" : "CLASS", + "lbl" : "biological_process" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002429", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some p' and p' positively regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in positive regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001199", + "type" : "CLASS", + "lbl" : "linear" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002304", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/terms/creator", + "val" : "cjm" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of, positive effect" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", + "type" : "PROPERTY", + "lbl" : "has_obo_format_version" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000412", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "imported from" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0004047", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002418" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-03-13T23:55:19Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of or within, positive effect" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002022", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:24Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly regulated by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002385", + "meta" : { + "definition" : { + "val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to developmentally contribute to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002264", + "meta" : { + "definition" : { + "val" : "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." + } ] + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of or within" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002023", + "meta" : { + "definition" : { + "val" : "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:38Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly negatively regulated by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0004046", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-03-13T23:55:05Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002418" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of or within, negative effect" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002024", + "meta" : { + "definition" : { + "val" : "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly positively regulated by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002387", + "meta" : { + "definition" : { + "val" : "x has the potential to develop into y iff x develops into y or if x is capable of developing into y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to develop into" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002388", + "meta" : { + "definition" : { + "val" : "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to directly develop into" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002025", + "meta" : { + "definition" : { + "val" : "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-22T14:14:36Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has effector activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002263", + "meta" : { + "definition" : { + "val" : "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." + } ] + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002384", + "meta" : { + "definition" : { + "val" : "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has developmental potential involving" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002019", + "meta" : { + "definition" : { + "val" : "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-07-19T17:30:36Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has ligand" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001241", + "type" : "CLASS", + "lbl" : "physical object quality" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002418", + "meta" : { + "definition" : { + "val" : "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "influences (processual)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of or within" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002015", + "meta" : { + "definition" : { + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:17Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'." + } ] + }, + "type" : "PROPERTY", + "lbl" : "has positive regulatory component activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002411", + "meta" : { + "definition" : { + "val" : "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002258", + "meta" : { + "definition" : { + "val" : "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "In general you should not use this relation to make assertions - use one of the more specific relations below this one" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally preceded by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002412", + "meta" : { + "definition" : { + "val" : "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately causally upstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002017", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:44:33Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has component activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002018", + "meta" : { + "definition" : { + "val" : "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:49:21Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has component process" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000066", + "meta" : { + "definition" : { + "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "occurs_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds_in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "occurs in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "occurs in" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "meta" : { + "definition" : { + "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "site of" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" + } ] + }, + "type" : "PROPERTY", + "lbl" : "contains process" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000062", + "meta" : { + "definition" : { + "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is preceded by" + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "preceded_by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "preceded by" + } ] + }, + "type" : "PROPERTY", + "lbl" : "preceded by" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000063", + "meta" : { + "definition" : { + "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "precedes" + } ] + }, + "type" : "PROPERTY", + "lbl" : "precedes" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0003824", + "type" : "CLASS", + "lbl" : "catalytic activity" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000000", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "anatomical entity" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000003", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "connected anatomical structure" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000019", + "type" : "CLASS", + "lbl" : "quality" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000006", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "material anatomical entity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000015", + "meta" : { + "definition" : { + "val" : "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "process" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002090", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/BFO_0000063" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "ends_at_start_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "meets" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately precedes" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002254", + "meta" : { + "definition" : { + "val" : "x has developmental contribution from y iff x has some part z such that z develops from y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has developmental contribution from" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0004035", + "meta" : { + "definition" : { + "val" : "c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of,_negative_effect" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002263" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-26T23:53:22Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of, negative effect" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002255", + "meta" : { + "definition" : { + "val" : "inverse of has developmental contribution from", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally contributes to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002013", + "meta" : { + "definition" : { + "val" : "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:30:46Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has regulatory component activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002014", + "meta" : { + "definition" : { + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:01Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has negative regulatory component activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002410", + "meta" : { + "definition" : { + "val" : "This relation groups causal relations between material entities and causal relations between processes", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0004032", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within,_positive_effect" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002264" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-26T23:49:30Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "acts upstream of or within, positive effect" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0004031", + "meta" : { + "definition" : { + "val" : "Holds between an entity and an process P where the entity enables 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Every instance of A requires some specific instance of B which must always be the same.", - "xrefs" : [ ] - } - }, - "type" : "CLASS", - "lbl" : "specifically dependent continuant" - } ], - "edges" : [ { "sub" : "http://purl.obolibrary.org/obo/RO_0002327", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002333" @@ -531,10 +2972,22 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0008150", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/BFO_0000015" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002203", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002286" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000001", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004034", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002263" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000141", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", "pred" : "is_a", @@ -543,14 +2996,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002213", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002336" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0004033", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002264" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002087", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000062" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002352", "pred" : "subPropertyOf", @@ -559,38 +3004,22 @@ "sub" : "http://purl.obolibrary.org/obo/CARO_0000014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/CARO_0000003" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0004032", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002264" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002212", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002335" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0004032", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002264" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0044464", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/CARO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002418", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002501" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002432", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002131" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0005634", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0044464" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002411", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000063" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002131", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002323" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002429", "pred" : "subPropertyOf", @@ -599,14 +3028,6 @@ "sub" : "http://purl.obolibrary.org/obo/CARO_0000003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/CARO_0000006" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000066", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000067" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002501", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002410" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002211", "pred" : "inverseOf", @@ -616,9 +3037,9 @@ "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002566" }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002431", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002264" + "sub" : "http://purl.obolibrary.org/obo/PATO_0000052", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002023", "pred" : "inverseOf", @@ -639,54 +3060,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002022", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002334" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002578", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002211" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0016740", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0003824" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002436", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002434" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002404", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002427" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0016301", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0016772" - }, { - "sub" : 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"http://purl.obolibrary.org/obo/CL_0000000", "pred" : "is_a", @@ -699,42 +3076,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002212", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0004034", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0004032" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002022", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002578" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002404", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000062" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002334", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002427" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002333", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002328" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002412", - 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"pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0016740" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000062", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000063" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002014", + "sub" : "http://purl.obolibrary.org/obo/RO_0002352", "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002335" + "obj" : "http://purl.obolibrary.org/obo/RO_0000056" }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002213", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002304" + "sub" : "http://purl.obolibrary.org/obo/PATO_0000051", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002233", "pred" : "inverseOf", @@ -799,18 +3124,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002563", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002464" - }, { - "sub" : 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"obj" : "http://purl.obolibrary.org/obo/RO_0002222" }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002264", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002500" + "sub" : "http://purl.obolibrary.org/obo/PATO_0000051", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000015", "pred" : "is_a", @@ -1107,31 +3316,28 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000062", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002086" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002218", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002500", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002595" } ], "id" : "http://purl.obolibrary.org/obo/pato/imports/ro_import.owl", "meta" : { "subsets" : [ ], "xrefs" : [ ], - "basicPropertyValues" : [ ] + "basicPropertyValues" : [ ], + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29/imports/ro_import.owl" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ ], "domainRangeAxioms" : [ { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002473", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002595", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002222", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ], + "rangeClassIds" : [ 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"http://purl.obolibrary.org/obo/CARO_0000000" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0000053", "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000020" ] @@ -1156,39 +3370,47 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" } ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002506", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002506", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002334", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002434", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002501", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002258", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002215", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], @@ -1197,6 +3419,10 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002479", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002501", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002018", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], @@ -1223,39 +3449,21 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000066", "http://purl.obolibrary.org/obo/BFO_0000050" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002598", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002213" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0004034", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002304" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002264", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002418" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0004035", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002305" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0004033", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0004046" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002448", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", 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"http://purl.obolibrary.org/obo/RO_0004031", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002314", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0000052", "http://purl.obolibrary.org/obo/BFO_0000050" ] @@ -1301,9 +3494,6 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002566", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002411", "http://purl.obolibrary.org/obo/RO_0002333" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002211", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002578", "http://purl.obolibrary.org/obo/RO_0002578" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000062", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000062" ] @@ -1313,9 +3503,6 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002566", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002411", "http://purl.obolibrary.org/obo/RO_0002233" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002450", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002629", "http://purl.obolibrary.org/obo/RO_0002333" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0000057" ] @@ -1331,6 +3518,54 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002430", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002131", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002598", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004034", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002304" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002264", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002418" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004033", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0004046" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002255", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002203", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002429", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002596", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002211" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002428", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002211" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002479", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/BFO_0000066" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004031", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002211", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002578", "http://purl.obolibrary.org/obo/RO_0002578" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002450", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002629", "http://purl.obolibrary.org/obo/RO_0002333" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002314", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002314", "http://purl.obolibrary.org/obo/BFO_0000050" ] diff --git a/src/ontology/imports/ro_import.obo b/src/ontology/imports/ro_import.obo index ffe7a670..5fc7cd09 100644 --- a/src/ontology/imports/ro_import.obo +++ b/src/ontology/imports/ro_import.obo @@ -1,6 +1,9 @@ format-version: 1.2 +data-version: pato/releases/2019-10-29/imports/ro_import.owl +subsetdef: ro-eco "" +subsetdef: RO:0002259 "" ontology: pato/imports/ro_import -owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(AnnotationProperty())\n\n\n\n############################\n# Classes\n############################\n\n# Class: (continuant)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (occurrent)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (kinase activity)\n\nSubClassOf( ObjectHasSelf())\n\n\nSubClassOf(ObjectSomeValuesFrom( ) ObjectUnionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))))\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z\"^^xsd:string) Annotation(rdfs:label \"infer input from direct reg\"^^xsd:string) Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z),\ne.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'\") Annotation(rdfs:label \"enabling an MF enables its parts\") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'\"^^xsd:string) Annotation(rdfs:label \"involved in BP\"^^xsd:string) Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From ligand activity to has_ligand\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to \\\"... -> overlaps\\\"\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.\") Annotation(rdfs:label \"inferring direct reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct neg reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct positive reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From has_ligand to ligand activity\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"effector input is compound function input\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"Input of effector is input of its parent MF\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly regulates X, its parent MF directly regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly positively regulates X, its parent MF directly positively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"if effector directly negatively regulates X, its parent MF directly negatively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\n) +owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(AnnotationProperty())\n\n\n\n############################\n# Classes\n############################\n\n# Class: (continuant)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (occurrent)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (kinase activity)\n\nSubClassOf( ObjectHasSelf())\n\n\nSubClassOf(ObjectSomeValuesFrom( ) ObjectUnionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))))\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z\"^^xsd:string) Annotation(rdfs:label \"infer input from direct reg\"^^xsd:string) Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z),\ne.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'\") Annotation(rdfs:label \"enabling an MF enables its parts\") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'\"^^xsd:string) Annotation(rdfs:label \"involved in BP\"^^xsd:string) Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From ligand activity to has_ligand\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to \\\"... -> overlaps\\\"\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.\") Annotation(rdfs:label \"inferring direct reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct neg reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct positive reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From has_ligand to ligand activity\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"effector input is compound function input\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"Input of effector is input of its parent MF\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly regulates X, its parent MF directly regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly positively regulates X, its parent MF directly positively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"if effector directly negatively regulates X, its parent MF directly negatively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nAnnotationAssertion(rdfs:comment \"\")\n) [Term] id: BFO:0000002 @@ -29,6 +32,12 @@ name: process def: "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." [] is_a: BFO:0000003 ! occurrent +[Term] +id: BFO:0000019 +name: quality +is_a: BFO:0000020 ! specifically dependent continuant +relationship: BFO:0000050 BFO:0000019 ! part of quality + [Term] id: BFO:0000020 name: specifically dependent continuant @@ -121,12 +130,65 @@ id: GO:0016772 name: transferase activity, transferring phosphorus-containing groups is_a: GO:0016740 ! transferase activity +[Term] +id: GO:0042995 +name: cell projection +is_a: GO:0044464 ! cell part +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl + [Term] id: GO:0044464 name: cell part is_a: CARO:0000014 ! cell part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl +[Term] +id: PATO:0000001 +name: quality +is_a: BFO:0000020 ! specifically dependent continuant +property_value: IAO:0000589 "quality (PATO)" xsd:string + +[Term] +id: PATO:0000051 +name: morphology +is_a: BFO:0000019 ! quality +is_a: PATO:0001241 ! physical object quality + +[Term] +id: PATO:0000052 +name: shape +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000141 +name: structure +is_a: PATO:0000051 ! morphology + +[Term] +id: PATO:0000402 +name: branched +is_a: PATO:0002009 ! branchiness + +[Term] +id: PATO:0001199 +name: linear +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0001241 +name: physical object quality +is_a: PATO:0000001 ! quality + +[Term] +id: PATO:0002009 +name: branchiness +is_a: PATO:0000052 ! shape + +[Term] +id: PATO:0002124 +name: laminar +is_a: PATO:0000141 ! structure + [Typedef] id: BFO:0000050 name: part of @@ -140,9 +202,18 @@ property_value: IAO:0000116 "Occurrents are not subject to change and so parthoo property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string property_value: IAO:0000118 "part_of" xsd:string property_value: RO:0001900 RO:0001901 +property_value: RO:0040042 BFO:0000002 +property_value: RO:0040042 BFO:0000003 +property_value: RO:0040042 BFO:0000004 +property_value: RO:0040042 BFO:0000017 +property_value: RO:0040042 BFO:0000019 +property_value: RO:0040042 BFO:0000020 +property_value: RO:0040042 BFO:0000031 +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf property_value: seeAlso http://www.obofoundry.org/ro/#OBO_REL:part_of xsd:string is_transitive: true -is_a: RO:0002131 +is_a: RO:0002131 ! overlaps inverse_of: BFO:0000051 ! has part [Typedef] @@ -159,12 +230,13 @@ property_value: IAO:0000116 "Parthood requires the part and the whole to have co property_value: IAO:0000118 "has_part" xsd:string property_value: RO:0001900 RO:0001901 is_transitive: true -is_a: RO:0002131 +is_a: RO:0002131 ! overlaps [Typedef] id: BFO:0000062 name: preceded by def: "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] +subset: ro-eco property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:preceded_by xsd:string property_value: IAO:0000111 "preceded by" xsd:string property_value: IAO:0000116 "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." xsd:string @@ -181,6 +253,7 @@ inverse_of: BFO:0000063 ! precedes id: BFO:0000063 name: precedes def: "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] +subset: ro-eco property_value: IAO:0000111 "precedes" xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent @@ -222,7 +295,7 @@ property_value: IAO:0000112 "this red color inheres in this apple" xsd:string property_value: IAO:0000116 "A dependent inheres in its bearer at all times for which the dependent exists." xsd:string property_value: IAO:0000118 "inheres_in" xsd:string property_value: RO:0001900 RO:0001901 -is_a: RO:0002314 +is_a: RO:0002314 ! inheres in part of inverse_of: RO:0000053 ! bearer of [Typedef] @@ -268,59 +341,103 @@ holds_over_chain: BFO:0000051 RO:0000057 [Typedef] id: RO:0002013 -is_a: RO:0002017 -is_a: RO:0002334 +name: has regulatory component activity +def: "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B." [] +is_a: RO:0002017 ! has component activity +is_a: RO:0002334 ! regulated by +created_by: dos +creation_date: 2017-05-24T09:30:46Z [Typedef] id: RO:0002014 -is_a: RO:0002013 -is_a: RO:0002335 +name: has negative regulatory component activity +def: "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B." [] +comment: By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'. +is_a: RO:0002013 ! has regulatory component activity +is_a: RO:0002335 ! negatively regulated by +created_by: dos +creation_date: 2017-05-24T09:31:01Z [Typedef] id: RO:0002015 -is_a: RO:0002013 -is_a: RO:0002336 +name: has positive regulatory component activity +def: "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B." [] +comment: By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'. +is_a: RO:0002013 ! has regulatory component activity +is_a: RO:0002336 ! positively regulated by +created_by: dos +creation_date: 2017-05-24T09:31:17Z [Typedef] id: RO:0002017 -is_a: RO:0002018 +name: has component activity +comment: A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B. +is_a: RO:0002018 ! has component process +created_by: dos +creation_date: 2017-05-24T09:44:33Z [Typedef] id: RO:0002018 +name: has component process +def: "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] domain: BFO:0000015 ! process range: BFO:0000015 ! process -is_a: RO:0002180 +is_a: RO:0002180 ! has component +created_by: dos +creation_date: 2017-05-24T09:49:21Z [Typedef] id: RO:0002019 +name: has ligand +def: "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function." [] domain: GO:0004872 -is_a: RO:0002233 +is_a: RO:0002233 ! has input +created_by: dos +creation_date: 2017-07-19T17:30:36Z [Typedef] id: RO:0002022 -is_a: RO:0002334 -inverse_of: RO:0002578 +name: directly regulated by +comment: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2. {xref="GOC:dos"} +is_a: RO:0002334 ! regulated by +inverse_of: RO:0002578 ! directly regulates +created_by: dos +creation_date: 2017-09-17T13:52:24Z [Typedef] id: RO:0002023 -is_a: RO:0002022 -inverse_of: RO:0002630 +name: directly negatively regulated by +def: "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1." [GOC:dos] +is_a: RO:0002022 ! directly regulated by +inverse_of: RO:0002630 ! directly negatively regulates +created_by: dos +creation_date: 2017-09-17T13:52:38Z [Typedef] id: RO:0002024 -is_a: RO:0002022 -inverse_of: RO:0002629 +name: directly positively regulated by +def: "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1." [GOC:dos] +is_a: RO:0002022 ! directly regulated by +inverse_of: RO:0002629 ! directly positively regulates +created_by: dos +creation_date: 2017-09-17T13:52:47Z [Typedef] id: RO:0002025 +name: has effector activity +def: "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity." [GOC:dos] +comment: This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations. is_functional: true -is_a: RO:0002017 -is_a: RO:0002211 +is_a: RO:0002017 ! has component activity +is_a: RO:0002211 ! regulates +created_by: dos +creation_date: 2017-09-22T14:14:36Z [Typedef] id: RO:0002086 name: ends after comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X) +subset: ro-eco property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string is_transitive: true is_a: RO:0002222 ! temporally related to @@ -338,367 +455,869 @@ inverse_of: RO:0002090 ! immediately precedes id: RO:0002090 name: immediately precedes comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y) +subset: ro-eco property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string property_value: IAO:0000118 "ends_at_start_of" xsd:string property_value: IAO:0000118 "meets" xsd:string +property_value: RO:0002575 BFO:0000063 is_a: BFO:0000063 ! precedes [Typedef] id: RO:0002131 +name: overlaps +def: "x overlaps y if and only if there exists some z such that x has part z and z part of y" [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: RO:0001900 RO:0001901 holds_over_chain: BFO:0000050 BFO:0000050 holds_over_chain: BFO:0000051 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} holds_over_chain: BFO:0000051 RO:0002131 -is_a: RO:0002323 +is_a: RO:0002323 ! mereotopologically related to +transitive_over: BFO:0000050 ! part of +expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" [] [Typedef] id: RO:0002180 +name: has component +def: "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." xsd:string +property_value: IAO:0000232 "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." xsd:string +property_value: RO:0001900 RO:0001901 +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:Componency is_a: BFO:0000051 ! has part +[Typedef] +id: RO:0002202 +name: develops from +def: "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y" [] +comment: This is the transitive form of the develops from relation +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000117 "Melissa Haendel" xsd:string +property_value: IAO:0000117 "Terry Meehan" xsd:string +domain: BFO:0000004 ! independent continuant +range: BFO:0000004 ! independent continuant +is_transitive: true +is_a: RO:0002258 ! developmentally preceded by +inverse_of: RO:0002203 ! develops into + +[Typedef] +id: RO:0002203 +name: develops into +def: "inverse of develops from" [] +subset: RO:0002259 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000117 "Terry Meehan" xsd:string +is_transitive: true +is_a: RO:0002286 ! developmentally succeeded by +is_a: RO:0002387 ! has potential to develop into +is_a: RO:0002388 ! has potential to directly develop into + [Typedef] id: RO:0002211 +name: regulates +def: "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2." [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000117 "David Hill" xsd:string +property_value: IAO:0000117 "Tanya Berardini" xsd:string +property_value: IAO:0000119 "GO" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000232 "Regulation precludes parthood; the regulatory process may not be within the regulated process." xsd:string +property_value: IAO:0000589 "regulates (processual)" xsd:string +property_value: IAO:0000600 "false" xsd:boolean domain: BFO:0000015 ! process range: BFO:0000015 ! process holds_over_chain: RO:0002578 RO:0002578 is_transitive: true -is_a: RO:0002411 -inverse_of: RO:0002334 +is_a: RO:0002411 ! causally upstream of +inverse_of: RO:0002334 ! regulated by [Typedef] id: RO:0002212 -is_a: RO:0002211 -is_a: RO:0002305 -inverse_of: RO:0002335 +name: negatively regulates +def: "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "negatively regulates (process to process)" xsd:string +property_value: RO:0004050 RO:0002211 +is_a: RO:0002211 ! regulates +is_a: RO:0002305 ! causally upstream of, negative effect +inverse_of: RO:0002335 ! negatively regulated by [Typedef] id: RO:0002213 +name: positively regulates +def: "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "positively regulates (process to process)" xsd:string +property_value: RO:0004049 RO:0002211 holds_over_chain: RO:0002212 RO:0002212 is_transitive: true -is_a: RO:0002211 -is_a: RO:0002304 -inverse_of: RO:0002336 +is_a: RO:0002211 ! regulates +is_a: RO:0002304 ! causally upstream of, positive effect +inverse_of: RO:0002336 ! positively regulated by [Typedef] id: RO:0002215 +name: capable of +def: "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. " [] +subset: ro-eco +property_value: IAO:0000112 "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" xsd:string +property_value: IAO:0000112 "osteoclast SubClassOf 'capable of' some 'bone resorption'" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "has function realized in" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20123131 +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/21208450 +property_value: IAO:0000232 "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." xsd:string domain: BFO:0000004 ! independent continuant range: BFO:0000015 ! process -is_a: RO:0002216 +is_a: RO:0002216 ! capable of part of +expand_expression_to: "RO_0000053 some (RO_0000054 only ?Y)" [] [Typedef] id: RO:0002216 +name: capable of part of +def: "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "has function in" xsd:string +property_value: seeAlso "defining-property-chains-involving-reflexivity" holds_over_chain: RO:0002215 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} -is_a: RO:0002328 -is_a: RO:0002500 +is_a: RO:0002328 ! functionally related to +is_a: RO:0002500 ! causal agent in process +expand_expression_to: "RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))" [] [Typedef] id: RO:0002217 +name: actively participates in +def: "x actively participates in y if and only if x participates in y and x realizes some active role" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "agent in" xsd:string is_a: RO:0000056 ! participates in -inverse_of: RO:0002218 +inverse_of: RO:0002218 ! obsolete has active participant [Typedef] id: RO:0002218 +name: obsolete has active participant +def: "x has participant y if and only if x realizes some active role that inheres in y" [] +subset: ro-eco +property_value: IAO:0000112 "'heart development' has active participant some Shh protein" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "This may be obsoleted and replaced by the original 'has agent' relation" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "has agent" xsd:string is_a: RO:0000057 ! has participant +is_obsolete: true [Typedef] id: RO:0002222 name: temporally related to comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. +subset: ro-eco +property_value: http://purl.org/dc/terms/source https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 xsd:anyURI property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000119 https://en.wikipedia.org/wiki/Allen%27s_interval_algebra +property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent [Typedef] id: RO:0002233 +name: has input +def: "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "consumes" xsd:string domain: BFO:0000015 ! process range: BFO:0000040 ! material entity is_a: RO:0000057 ! has participant -inverse_of: RO:0002352 +inverse_of: RO:0002352 ! input of + +[Typedef] +id: RO:0002254 +name: has developmental contribution from +def: "x has developmental contribution from y iff x has some part z such that z develops from y" [] +property_value: IAO:0000112 "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +domain: CARO:0000000 ! anatomical entity +range: CARO:0000000 ! anatomical entity +holds_over_chain: BFO:0000051 RO:0002202 +is_a: RO:0002258 ! developmentally preceded by +inverse_of: RO:0002255 ! developmentally contributes to + +[Typedef] +id: RO:0002255 +name: developmentally contributes to +def: "inverse of has developmental contribution from" [] +subset: RO:0002259 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +holds_over_chain: RO:0002203 BFO:0000050 +is_a: RO:0002286 ! developmentally succeeded by +is_a: RO:0002385 ! has potential to developmentally contribute to + +[Typedef] +id: RO:0002258 +name: developmentally preceded by +def: "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p" [] +comment: This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "false" xsd:boolean +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "In general you should not use this relation to make assertions - use one of the more specific relations below this one" xsd:string +domain: BFO:0000002 ! continuant +range: BFO:0000002 ! continuant +is_a: RO:0002324 ! developmentally related to +inverse_of: RO:0002286 ! developmentally succeeded by [Typedef] id: RO:0002263 +name: acts upstream of +def: "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes." [] +property_value: IAO:0000112 "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." xsd:string +property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of holds_over_chain: RO:0002327 RO:0002411 -is_a: RO:0002264 +is_a: RO:0002264 ! acts upstream of or within [Typedef] id: RO:0002264 +name: acts upstream of or within +def: "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process." [] +synonym: "affects" RELATED [] +property_value: IAO:0000112 "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." xsd:string +property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within holds_over_chain: RO:0002327 RO:0002418 -is_a: RO:0002500 +is_a: RO:0002500 ! causal agent in process + +[Typedef] +id: RO:0002286 +name: developmentally succeeded by +def: "Inverse of developmentally preceded by" [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002384 ! has developmental potential involving [Typedef] id: RO:0002304 -is_a: RO:0002411 -is_a: RO:0004047 +name: causally upstream of, positive effect +comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y +property_value: http://purl.org/dc/terms/creator "cjm" xsd:string +property_value: RO:0004049 RO:0002411 +is_a: RO:0002411 ! causally upstream of +is_a: RO:0004047 ! causally upstream of or within, positive effect [Typedef] id: RO:0002305 -is_a: RO:0002411 -is_a: RO:0004046 +name: causally upstream of, negative effect +comment: holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y +property_value: http://purl.org/dc/terms/creator "cjm" xsd:string +property_value: RO:0004050 RO:0002411 +is_a: RO:0002411 ! causally upstream of +is_a: RO:0004046 ! causally upstream of or within, negative effect [Typedef] id: RO:0002314 +name: inheres in part of +def: "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w." [] +property_value: IAO:0000116 "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20064205 +property_value: RO:0001900 RO:0001901 +property_value: seeAlso "defining-property-chains-involving-reflexivity" holds_over_chain: RO:0000052 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} -is_a: RO:0002502 +is_a: RO:0002502 ! depends on transitive_over: BFO:0000050 ! part of +[Typedef] +id: RO:0002323 +name: mereotopologically related to +def: "A mereological relationship or a topological relationship" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" xsd:string +property_value: RO:0001900 RO:0001901 + +[Typedef] +id: RO:0002324 +name: developmentally related to +def: "A relationship that holds between entities participating in some developmental process (GO:0032502)" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" xsd:string + [Typedef] id: RO:0002327 -is_a: RO:0002215 -inverse_of: RO:0002333 +name: enables +property_value: IAO:0000112 "a particular instances of akt-2 enables some instance of protein kinase activity" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "catalyzes" xsd:string +property_value: IAO:0000118 "executes" xsd:string +property_value: IAO:0000118 "has" xsd:string +property_value: IAO:0000118 "is catalyzing" xsd:string +property_value: IAO:0000118 "is executing" xsd:string +property_value: IAO:0000232 "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." xsd:string +property_value: IAO:0000232 "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." xsd:string +is_a: RO:0002215 ! capable of +inverse_of: RO:0002333 ! enabled by transitive_over: BFO:0000051 ! has part -transitive_over: RO:0002017 +transitive_over: RO:0002017 ! has component activity + +[Typedef] +id: RO:0002328 +name: functionally related to +def: "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "This is a grouping relation that collects relations used for the purpose of connecting structure and function" xsd:string [Typedef] id: RO:0002329 +name: part of structure that is capable of +def: "this relation holds between c and p when c is part of some c', and c' is capable of p." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "false" xsd:boolean holds_over_chain: BFO:0000050 RO:0002215 {http://purl.obolibrary.org/obo/RO_0002581="true"} -is_a: RO:0002328 +is_a: RO:0002328 ! functionally related to [Typedef] id: RO:0002331 +name: involved in +def: "c involved_in p if and only if c enables some process p', and p' is part of p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "actively involved in" xsd:string +property_value: IAO:0000118 "enables part of" xsd:string +property_value: seeAlso Involved:in holds_over_chain: RO:0002327 BFO:0000050 -is_a: RO:0002217 -is_a: RO:0002431 +is_a: RO:0002217 ! actively participates in +is_a: RO:0002431 ! involved in or involved in regulation of transitive_over: BFO:0000050 ! part of [Typedef] id: RO:0002333 +name: enabled by +def: "inverse of enables" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: RO:0000057 ! has participant -is_a: RO:0002328 +is_a: RO:0002328 ! functionally related to [Typedef] id: RO:0002334 +name: regulated by +def: "inverse of regulates" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000589 "regulated by (processual)" xsd:string domain: BFO:0000015 ! process range: BFO:0000015 ! process is_transitive: true -is_a: RO:0002427 +is_a: RO:0002427 ! causally downstream of or within [Typedef] id: RO:0002335 -is_a: RO:0002334 +name: negatively regulated by +def: "inverse of negatively regulates" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002334 ! regulated by [Typedef] id: RO:0002336 -is_a: RO:0002334 +name: positively regulated by +def: "inverse of positively regulates" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002334 ! regulated by [Typedef] id: RO:0002352 +name: input of +def: "inverse of has input" [] +subset: ro-eco +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: RO:0000056 ! participates in -is_a: RO:0002328 +is_a: RO:0002328 ! functionally related to + +[Typedef] +id: RO:0002384 +name: has developmental potential involving +def: "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction)." [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +domain: CARO:0000000 ! anatomical entity +range: CARO:0000000 ! anatomical entity +is_a: RO:0002324 ! developmentally related to + +[Typedef] +id: RO:0002385 +name: has potential to developmentally contribute to +def: "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002384 ! has developmental potential involving + +[Typedef] +id: RO:0002387 +name: has potential to develop into +def: "x has the potential to develop into y iff x develops into y or if x is capable of developing into y" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002384 ! has developmental potential involving + +[Typedef] +id: RO:0002388 +name: has potential to directly develop into +def: "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002387 ! has potential to develop into [Typedef] id: RO:0002404 +name: causally downstream of +def: "inverse of upstream of" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: BFO:0000062 ! preceded by -is_a: RO:0002427 -inverse_of: RO:0002411 +is_a: RO:0002427 ! causally downstream of or within +inverse_of: RO:0002411 ! causally upstream of [Typedef] id: RO:0002405 +name: immediately causally downstream of +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: RO:0002087 ! immediately preceded by -is_a: RO:0002404 -inverse_of: RO:0002412 +is_a: RO:0002404 ! causally downstream of +inverse_of: RO:0002412 ! immediately causally upstream of + +[Typedef] +id: RO:0002410 +name: causally related to +def: "This relation groups causal relations between material entities and causal relations between processes" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000116 "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string [Typedef] id: RO:0002411 +name: causally upstream of +def: "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string is_transitive: true is_a: BFO:0000063 ! precedes -is_a: RO:0002418 +is_a: RO:0002418 ! causally upstream of or within [Typedef] id: RO:0002412 +name: immediately causally upstream of +def: "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q." [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: RO:0002575 RO:0002411 is_a: RO:0002090 ! immediately precedes -is_a: RO:0002411 +is_a: RO:0002411 ! causally upstream of [Typedef] id: RO:0002418 +name: causally upstream of or within +def: "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q." [] +synonym: "affects" RELATED [] +property_value: IAO:0000116 "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "influences (processual)" xsd:string is_transitive: true -is_a: RO:0002501 -inverse_of: RO:0002427 +is_a: RO:0002501 ! causal relation between processes +inverse_of: RO:0002427 ! causally downstream of or within [Typedef] id: RO:0002427 +name: causally downstream of or within +def: "inverse of causally upstream of or within" [] +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations is_transitive: true -is_a: RO:0002501 +is_a: RO:0002501 ! causal relation between processes [Typedef] id: RO:0002428 +name: involved in regulation of +def: "c involved in regulation of p if c is involved in some p' and p' regulates some p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string holds_over_chain: RO:0002327 RO:0002211 holds_over_chain: RO:0002331 RO:0002211 -is_a: RO:0002263 -is_a: RO:0002431 +is_a: RO:0002263 ! acts upstream of +is_a: RO:0002431 ! involved in or involved in regulation of [Typedef] id: RO:0002429 +name: involved in positive regulation of +def: "c involved in regulation of p if c is involved in some p' and p' positively regulates some p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: RO:0004049 RO:0002428 holds_over_chain: RO:0002327 RO:0002213 holds_over_chain: RO:0002331 RO:0002213 -is_a: RO:0002428 +is_a: RO:0002428 ! involved in regulation of [Typedef] id: RO:0002430 +name: involved in negative regulation of +def: "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: RO:0004050 RO:0002428 holds_over_chain: RO:0002327 RO:0002212 holds_over_chain: RO:0002331 RO:0002212 -is_a: RO:0002428 +is_a: RO:0002428 ! involved in regulation of [Typedef] id: RO:0002431 -is_a: RO:0002264 -is_a: RO:0002328 -is_a: RO:0002500 +name: involved in or involved in regulation of +def: "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" [] +property_value: IAO:0000116 "OWL does not allow defining object properties via a Union" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "involved in or reguates" xsd:string +is_a: RO:0002264 ! acts upstream of or within +is_a: RO:0002328 ! functionally related to +is_a: RO:0002500 ! causal agent in process [Typedef] id: RO:0002432 +name: is active in +def: "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure." [GOC:cjm, GOC:dos] +synonym: "enables activity in" EXACT [] +property_value: IAO:0000112 "A protein that enables activity in a cytosol." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "executes activity in" xsd:string holds_over_chain: RO:0002327 BFO:0000066 {http://purl.obolibrary.org/obo/RO_0002581="true"} -is_a: RO:0002131 -is_a: RO:0002328 +is_a: RO:0002131 ! overlaps +is_a: RO:0002328 ! functionally related to [Typedef] id: RO:0002434 +name: interacts with +def: "A relationship that holds between two entities in which the processes executed by the two entities are causally connected." [] +subset: ro-eco +synonym: "in pairwise interaction with" EXACT [] +property_value: http://xmlns.com/foaf/0.1/page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI +property_value: IAO:0000116 "Considering relabeling as 'pairwise interacts with'" xsd:anyURI +property_value: IAO:0000116 "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." xsd:string +property_value: seeAlso http://purl.obolibrary.org/obo/MI_0914 xsd:anyURI domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_symmetric: true [Typedef] id: RO:0002436 +name: molecularly interacts with +def: "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "binds" xsd:string +property_value: IAO:0000118 "molecularly binds with" xsd:string +property_value: seeAlso ECO:0000353 +property_value: seeAlso http://purl.obolibrary.org/obo/MI_0915 xsd:anyURI is_symmetric: true -is_a: RO:0002434 +is_a: RO:0002434 ! interacts with [Typedef] id: RO:0002447 -is_a: RO:0002436 +name: phosphorylates +property_value: IAO:0000116 "Axiomatization to GO to be added later" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." xsd:string +is_a: RO:0002436 ! molecularly interacts with [Typedef] id: RO:0002448 -is_a: RO:0002436 -is_a: RO:0002566 +name: activity directly regulates activity of +def: "Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B." [] +synonym: "molecularly controls" EXACT [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002436 ! molecularly interacts with +is_a: RO:0002566 ! causally influences [Typedef] id: RO:0002449 -is_a: RO:0002448 +name: activity directly negatively regulates activity of +def: "Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B." [] +synonym: "molecularly decreases activity of" EXACT [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "inhibits" xsd:string +is_a: RO:0002448 ! activity directly regulates activity of [Typedef] id: RO:0002450 -is_a: RO:0002448 +name: activity directly positively regulates activity of +def: "Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B." [] +synonym: "molecularly increases activity of" EXACT [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "activates" xsd:string +is_a: RO:0002448 ! activity directly regulates activity of + +[Typedef] +id: RO:0002464 +name: helper property (not for use in curation) +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." xsd:string + +[Typedef] +id: RO:0002473 +name: composed primarily of +def: "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y." [] +subset: ro-eco +property_value: IAO:0000112 "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/22293552 +property_value: RO:0001900 RO:0001901 +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity +is_a: BFO:0000051 ! has part [Typedef] id: RO:0002479 +name: has part that occurs in +def: "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c." [] +subset: ro-eco +property_value: IAO:0000117 "Chris Mungall" xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000004 ! independent continuant holds_over_chain: BFO:0000051 BFO:0000066 {http://purl.obolibrary.org/obo/RO_0002581="true"} [Typedef] id: RO:0002481 -is_a: RO:0002564 +name: is kinase activity +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002564 ! molecular interaction relation helper property [Typedef] id: RO:0002500 -is_a: RO:0002595 -inverse_of: RO:0002608 +name: causal agent in process +def: "A relationship between a material entity and a process where the material entity has some causal role that influences the process" [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +is_a: RO:0002595 ! causal relation between material entity and a process +inverse_of: RO:0002608 ! process has causal agent [Typedef] id: RO:0002501 +name: causal relation between processes +def: "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent -is_a: RO:0002410 +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0002502 +name: depends on +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: seeAlso BFO:0000169 [Typedef] id: RO:0002506 +name: causal relation between material entities +property_value: IAO:0000116 "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity -is_a: RO:0002410 +is_a: RO:0002410 ! causally related to [Typedef] id: RO:0002559 -is_a: RO:0002506 -inverse_of: RO:0002566 +name: causally influenced by +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "causally influenced by (material entity to material entity)" xsd:string +is_a: RO:0002506 ! causal relation between material entities +inverse_of: RO:0002566 ! causally influences [Typedef] id: RO:0002563 -is_a: RO:0002464 +name: interaction relation helper property +property_value: http://xmlns.com/foaf/0.1/page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29 +is_a: RO:0002464 ! helper property (not for use in curation) [Typedef] id: RO:0002564 -is_a: RO:0002563 +name: molecular interaction relation helper property +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002563 ! interaction relation helper property [Typedef] id: RO:0002566 -is_a: RO:0002506 +name: causally influences +def: "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b" [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "causally influences (material entity to material entity)" xsd:string +is_a: RO:0002506 ! causal relation between material entities [Typedef] id: RO:0002578 -is_a: RO:0002211 -is_a: RO:0002412 +name: directly regulates +def: "Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." [] +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "directly regulates (processual)" xsd:string +property_value: RO:0002575 RO:0002211 +is_a: RO:0002211 ! regulates +is_a: RO:0002412 ! immediately causally upstream of [Typedef] id: RO:0002584 +name: has part structure that is capable of +def: "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p" [] +property_value: IAO:0000112 "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string holds_over_chain: BFO:0000051 RO:0002215 -is_a: RO:0002328 -is_a: RO:0002595 +is_a: RO:0002328 ! functionally related to +is_a: RO:0002595 ! causal relation between material entity and a process [Typedef] id: RO:0002595 +name: causal relation between material entity and a process +def: "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity." [] +property_value: IAO:0000116 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations domain: BFO:0000040 ! material entity range: BFO:0000015 ! process -is_a: RO:0002410 +is_a: RO:0002410 ! causally related to [Typedef] id: RO:0002596 +name: capable of regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a regulates p." [] +property_value: IAO:0000112 "pyrethroid -> growth" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations holds_over_chain: RO:0002215 RO:0002211 -is_a: RO:0002500 +is_a: RO:0002500 ! causal agent in process [Typedef] id: RO:0002597 +name: capable of negatively regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations holds_over_chain: RO:0002215 RO:0002212 -is_a: RO:0002596 +is_a: RO:0002596 ! capable of regulating [Typedef] id: RO:0002598 +name: capable of positively regulating +def: "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p." [] +property_value: IAO:0000112 "renin -> arteriolar smooth muscle contraction" xsd:string +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations holds_over_chain: RO:0002215 RO:0002213 -is_a: RO:0002596 +is_a: RO:0002596 ! capable of regulating [Typedef] id: RO:0002608 -is_a: RO:0002410 +name: process has causal agent +def: "Inverse of 'causal agent in process'" [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +is_a: RO:0002410 ! causally related to [Typedef] id: RO:0002629 -is_a: RO:0002213 -is_a: RO:0002578 +name: directly positively regulates +def: "Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "directly positively regulates (process to process)" xsd:string +property_value: RO:0004049 RO:0002578 +is_a: RO:0002213 ! positively regulates +is_a: RO:0002578 ! directly regulates [Typedef] id: RO:0002630 -is_a: RO:0002212 -is_a: RO:0002578 +name: directly negatively regulates +def: "Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2." [] +property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations +property_value: IAO:0000589 "directly negatively regulates (process to process)" xsd:string +property_value: RO:0004050 RO:0002578 +is_a: RO:0002212 ! negatively regulates +is_a: RO:0002578 ! directly regulates [Typedef] id: RO:0004031 +name: enables subfunction +def: "Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P." [] holds_over_chain: RO:0002327 BFO:0000051 -is_a: RO:0002328 +is_a: RO:0002328 ! functionally related to +created_by: cjm +creation_date: 2018-01-25T23:20:13Z [Typedef] id: RO:0004032 +name: acts upstream of or within, positive effect +property_value: RO:0004049 RO:0002264 +property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within,_positive_effect holds_over_chain: RO:0002327 RO:0004047 -is_a: RO:0002264 +is_a: RO:0002264 ! acts upstream of or within +created_by: cjm +creation_date: 2018-01-26T23:49:30Z [Typedef] id: RO:0004033 +name: acts upstream of or within, negative effect +property_value: RO:0004050 RO:0002264 holds_over_chain: RO:0002327 RO:0004046 -is_a: RO:0002264 +is_a: RO:0002264 ! acts upstream of or within +created_by: cjm +creation_date: 2018-01-26T23:49:51Z [Typedef] id: RO:0004034 +name: acts upstream of, positive effect +def: "c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive" [] +property_value: RO:0004049 RO:0002263 +property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of,_positive_effect holds_over_chain: RO:0002327 RO:0002304 -is_a: RO:0002263 -is_a: RO:0004032 +is_a: RO:0002263 ! acts upstream of +is_a: RO:0004032 ! acts upstream of or within, positive effect +created_by: cjm +creation_date: 2018-01-26T23:53:14Z [Typedef] id: RO:0004035 +name: acts upstream of, negative effect +def: "c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative" [] +property_value: RO:0004050 RO:0002263 +property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of,_negative_effect holds_over_chain: RO:0002327 RO:0002305 -is_a: RO:0002263 -is_a: RO:0004033 +is_a: RO:0002263 ! acts upstream of +is_a: RO:0004033 ! acts upstream of or within, negative effect +created_by: cjm +creation_date: 2018-01-26T23:53:22Z [Typedef] id: RO:0004046 -is_a: RO:0002418 +name: causally upstream of or within, negative effect +property_value: RO:0004050 RO:0002418 +is_a: RO:0002418 ! causally upstream of or within +created_by: cjm +creation_date: 2018-03-13T23:55:05Z [Typedef] id: RO:0004047 -is_a: RO:0002418 +name: causally upstream of or within, positive effect +property_value: RO:0004049 RO:0002418 +is_a: RO:0002418 ! causally upstream of or within +created_by: cjm +creation_date: 2018-03-13T23:55:19Z diff --git a/src/ontology/imports/ro_import.owl b/src/ontology/imports/ro_import.owl index fe6ab54e..185b8ed3 100644 --- a/src/ontology/imports/ro_import.owl +++ b/src/ontology/imports/ro_import.owl @@ -7,11 +7,17 @@ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" + xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:swrl="http://www.w3.org/2003/11/swrl#" xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#" - xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"> - + xmlns:swrlb="http://www.w3.org/2003/11/swrlb#" + xmlns:terms="http://purl.org/dc/terms/" + xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" + xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> + + + @@ -28,79 +34,193 @@ - + + editor preferred term + - + + + example of usage + - + + has curation status + - + + + definition + definition + - + + + editor note + - + + + term editor + - + + + alternative term + - + + + definition source + + + + + + + - + + + imported from + + + + + + + - + + + OBO foundry unique label + + + + + + + - + + An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context. + temporal interpretation + https://github.com/oborel/obo-relations/wiki/ROAndTime + + + + + + + + + + + + + + + - + + If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL + is a defining property chain axiom + - + + If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R. + is a defining property chain axiom where second argument is reflexive + + + + + + + + 'anterior end of organism' is-opposite-of 'posterior end of organism' + 'increase in temperature' is-opposite-of 'decrease in temperature' + x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). + is opposite of + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -110,12 +230,106 @@ + + + + + + + + + + + + + + + + subset_property + + + + + + + + + + + + + + + + + + + + has_broad_synonym + + + + + + + + database_cross_reference + + + + + + + + has_exact_synonym + + + + + + + + has_obo_format_version + + + + + + + + has_related_synonym + + + + + + + + + + + + + + in_subset + + + + + + + + shorthand + + + + @@ -128,6 +342,12 @@ + + + + + + + + + + + + + + + x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y + Chris Mungall + David Osumi-Sutherland + Melissa Haendel + Terry Meehan + This is the transitive form of the develops from relation + develops from + + + + + + + + + + + + + inverse of develops from + Chris Mungall + David Osumi-Sutherland + Terry Meehan + + develops into @@ -515,6 +872,18 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2. + We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit + Chris Mungall + David Hill + Tanya Berardini + + GO + Regulation precludes parthood; the regulatory process may not be within the regulated process. + regulates (processual) + false + regulates @@ -525,6 +894,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2. + Chris Mungall + + negatively regulates (process to process) + + negatively regulates @@ -540,6 +915,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2. + Chris Mungall + + positively regulates (process to process) + + positively regulates @@ -550,6 +931,17 @@ A continuant cannot have an occurrent as part: use 'participates in'. + mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974) + osteoclast SubClassOf 'capable of' some 'bone resorption' + A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. + Chris Mungall + has function realized in + + + For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)". + RO_0000053 some (RO_0000054 only ?Y) + + capable of @@ -563,6 +955,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p. + Chris Mungall + has function in + RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y)) + capable of part of + @@ -581,6 +979,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + x actively participates in y if and only if x participates in y and x realizes some active role + Chris Mungall + agent in + actively participates in @@ -589,6 +991,15 @@ A continuant cannot have an occurrent as part: use 'participates in'. + 'heart development' has active participant some Shh protein + + x has participant y if and only if x realizes some active role that inheres in y + This may be obsoleted and replaced by the original 'has agent' relation + Chris Mungall + has agent + + obsolete has active participant + true @@ -599,7 +1010,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Chris Mungall + Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends. + https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 + A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. temporally related to @@ -613,6 +1028,68 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p. + Chris Mungall + consumes + + has input + + + + + + + + + + + + + + + + Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong] + + x has developmental contribution from y iff x has some part z such that z develops from y + Chris Mungall + has developmental contribution from + + + + + + + + + + + + + + + inverse of has developmental contribution from + Chris Mungall + + developmentally contributes to + + + + + + + + + + + + + Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p + false + Chris Mungall + In general you should not use this relation to make assertions - use one of the more specific relations below this one + This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from + developmentally preceded by @@ -625,6 +1102,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision. + c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes. + acts upstream of + @@ -637,6 +1118,23 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway. + c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process. + affects + acts upstream of or within + + + + + + + + + + + Inverse of developmentally preceded by + Chris Mungall + developmentally succeeded by @@ -646,6 +1144,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y + causally upstream of, positive effect @@ -655,6 +1157,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y + causally upstream of, negative effect @@ -671,6 +1177,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. + q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w. + Because part_of is transitive, inheres in is a sub-relation of inheres in part of + Chris Mungall + + + inheres in part of + @@ -686,7 +1199,24 @@ A continuant cannot have an occurrent as part: use 'participates in'. - + + A mereological relationship or a topological relationship + Chris Mungall + Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships + + mereotopologically related to + + + + + + + + A relationship that holds between entities participating in some developmental process (GO:0032502) + Chris Mungall + Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development + developmentally related to + @@ -703,13 +1233,28 @@ A continuant cannot have an occurrent as part: use 'participates in'. + a particular instances of akt-2 enables some instance of protein kinase activity + Chris Mungall + catalyzes + executes + has + is catalyzing + is executing + This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized. + This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time. + enables - + + A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities. + Chris Mungall + This is a grouping relation that collects relations used for the purpose of connecting structure and function + functionally related to + @@ -721,6 +1266,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + this relation holds between c and p when c is part of some c', and c' is capable of p. + Chris Mungall + false + part of structure that is capable of @@ -747,6 +1296,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c involved_in p if and only if c enables some process p', and p' is part of p + Chris Mungall + actively involved in + enables part of + involved in + @@ -756,6 +1311,9 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of enables + Chris Mungall + enabled by @@ -767,6 +1325,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of regulates + Chris Mungall + regulated by (processual) + + regulated by @@ -775,6 +1338,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of negatively regulates + Chris Mungall + + negatively regulated by @@ -783,6 +1350,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of positively regulates + Chris Mungall + + positively regulated by @@ -792,6 +1363,61 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of has input + Chris Mungall + + + input of + + + + + + + + + + + + x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction). + Chris Mungall + has developmental potential involving + + + + + + + + + + x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y + Chris Mungall + has potential to developmentally contribute to + + + + + + + + + + x has the potential to develop into y iff x develops into y or if x is capable of developing into y + Chris Mungall + has potential to develop into + + + + + + + + + + x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y + Chris Mungall + has potential to directly develop into @@ -802,6 +1428,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + inverse of upstream of + Chris Mungall + causally downstream of @@ -812,13 +1442,37 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + Chris Mungall + immediately causally downstream of - + + + This relation groups causal relations between material entities and causal relations between processes + This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. + +To define causal relations in an activity-flow type network, we make use of 3 primitives: + + * Temporal: how do the intervals of the two occurrents relate? + * Is the causal relation regulatory? + * Is the influence positive or negative + +The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. + +For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. + +For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. + +Each of these 3 primitives can be composed to yield a cross-product of different relation types. + Chris Mungall + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causally related to + @@ -828,6 +1482,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain + Chris Mungall + causally upstream of @@ -837,6 +1495,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q. + Chris Mungall + + immediately causally upstream of @@ -847,6 +1510,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q. + We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2 + Chris Mungall + influences (processual) + affects + causally upstream of or within @@ -856,6 +1525,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + inverse of causally upstream of or within + Chris Mungall + + + causally downstream of or within @@ -873,6 +1547,9 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c involved in regulation of p if c is involved in some p' and p' regulates some p + Chris Mungall + involved in regulation of @@ -889,6 +1566,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c involved in regulation of p if c is involved in some p' and p' positively regulates some p + Chris Mungall + + involved in positive regulation of @@ -905,6 +1586,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c involved in regulation of p if c is involved in some p' and p' negatively regulates some p + Chris Mungall + + involved in negative regulation of @@ -915,6 +1600,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p + OWL does not allow defining object properties via a Union + Chris Mungall + involved in or reguates + involved in or involved in regulation of @@ -928,6 +1618,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A protein that enables activity in a cytosol. + c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure. + Chris Mungall + executes activity in + enables activity in + + is active in @@ -938,6 +1635,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. true + + + + c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure. + GOC:cjm + GOC:dos + @@ -947,6 +1651,16 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A relationship that holds between two entities in which the processes executed by the two entities are causally connected. + Considering relabeling as 'pairwise interacts with' + This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact. + Chris Mungall + Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules. + in pairwise interaction with + + interacts with + http://purl.obolibrary.org/obo/MI_0914 + https://github.com/oborel/obo-relations/wiki/InteractionRelations @@ -956,6 +1670,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. + An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other. + Chris Mungall + binds + molecularly binds with + molecularly interacts with + + http://purl.obolibrary.org/obo/MI_0915 @@ -964,6 +1685,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Axiomatization to GO to be added later + Chris Mungall + An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y. + phosphorylates @@ -978,6 +1703,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. + Chris Mungall + molecularly controls + activity directly regulates activity of @@ -991,6 +1720,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B. + Chris Mungall + inhibits + molecularly decreases activity of + activity directly negatively regulates activity of @@ -1004,13 +1738,39 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B. + Chris Mungall + activates + molecularly increases activity of + activity directly positively regulates activity of - + + Chris Mungall + This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning. + helper property (not for use in curation) + + + + + + + + + + + 'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate' + x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y. + Chris Mungall + + + + composed primarily of + @@ -1023,6 +1783,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c. + Chris Mungall + + has part that occurs in @@ -1040,6 +1804,8 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Chris Mungall + is kinase activity @@ -1049,6 +1815,9 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A relationship between a material entity and a process where the material entity has some causal role that influences the process + + causal agent in process @@ -1059,13 +1828,22 @@ A continuant cannot have an occurrent as part: use 'participates in'. + p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q. + Chris Mungall + + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causal relation between processes - + + Chris Mungall + depends on + + @@ -1075,6 +1853,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch + Chris Mungall + + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + causal relation between material entities @@ -1084,6 +1867,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Chris Mungall + + causally influenced by (material entity to material entity) + causally influenced by @@ -1092,6 +1879,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Chris Mungall + interaction relation helper property + + https://github.com/oborel/obo-relations/wiki/InteractionRelations @@ -1100,6 +1891,8 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Chris Mungall + molecular interaction relation helper property @@ -1118,6 +1911,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b + Chris Mungall + + causally influences (material entity to material entity) + causally influences @@ -1127,6 +1925,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2. + Chris Mungall + + directly regulates (processual) + + directly regulates @@ -1140,6 +1944,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + gland SubClassOf 'has part structure that is capable of' some 'secretion by cell' + s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p + Chris Mungall + has part structure that is capable of @@ -1150,6 +1958,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + Chris Mungall + + causal relation between material entity and a process @@ -1162,6 +1975,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + pyrethroid -> growth + Holds between c and p if and only if c is capable of some activity a, and a regulates p. + + capable of regulating @@ -1174,6 +1991,9 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p. + + capable of negatively regulating @@ -1186,6 +2006,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + renin -> arteriolar smooth muscle contraction + Holds between c and p if and only if c is capable of some activity a, and a positively regulates p. + + capable of positively regulating @@ -1194,6 +2018,9 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Inverse of 'causal agent in process' + + process has causal agent @@ -1203,6 +2030,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2. + + directly positively regulates (process to process) + + directly positively regulates @@ -1212,6 +2044,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2. + + directly negatively regulates (process to process) + + directly negatively regulates @@ -1224,6 +2061,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P. + cjm + 2018-01-25T23:20:13Z + enables subfunction @@ -1236,6 +2077,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + 2018-01-26T23:49:30Z + acts upstream of or within, positive effect + @@ -1248,6 +2094,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + 2018-01-26T23:49:51Z + acts upstream of or within, negative effect @@ -1261,6 +2111,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive + + cjm + 2018-01-26T23:53:14Z + acts upstream of, positive effect + @@ -1274,6 +2130,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative + + cjm + 2018-01-26T23:53:22Z + acts upstream of, negative effect + @@ -1282,6 +2144,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + 2018-03-13T23:55:05Z + causally upstream of or within, negative effect @@ -1290,6 +2156,10 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + cjm + 2018-03-13T23:55:19Z + causally upstream of or within, positive effect @@ -1375,6 +2245,21 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + + + + + + quality + + + + @@ -1447,7 +2332,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. - organism or virus or viroid + organism or virus or viroid @@ -1456,7 +2341,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. - biological entity + biological entity @@ -1476,7 +2361,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. molecular process - molecular_function + molecular_function @@ -1485,7 +2370,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. - catalytic activity + catalytic activity @@ -1510,7 +2395,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. - biological_process + biological_process @@ -1525,7 +2410,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. true - kinase activity + kinase activity @@ -1534,7 +2419,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. - transferase activity + transferase activity @@ -1543,7 +2428,17 @@ A continuant cannot have an occurrent as part: use 'participates in'. - transferase activity, transferring phosphorus-containing groups + transferase activity, transferring phosphorus-containing groups + + + + + + + + + + cell projection @@ -1564,6 +2459,148 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + quality (PATO) + quality + + + + + + + + + + morphology + + + + + + + + + shape + + + + + + + + + structure + + + + + + + + + branched + + + + + + + + + linear + + + + + + + + + physical object quality + + + + + + + + + branchiness + + + + + + + + + laminar + + + + + + + + + + + + + + pending final vetting + + + + + + + + + +## Elucidation + +This is used when the statement/axiom is assumed to hold true 'eternally' + +## How to interpret (informal) + +First the "atemporal" FOL is derived from the OWL using the standard +interpretation. This axiom is temporalized by embedding the axiom +within a for-all-times quantified sentence. The t argument is added to +all instantiation predicates and predicates that use this relation. + +## Example + + Class: nucleus + SubClassOf: part_of some cell + + forall t : + forall n : + instance_of(n,Nucleus,t) + implies + exists c : + instance_of(c,Cell,t) + part_of(n,c,t) + +## Notes + +This interpretation is *not* the same as an at-all-times relation + + + axiom holds for all times + + + + + + + + + + + + IAO:0000112 + uberon + example_of_usage + true + example_of_usage + example of usage + + + + + + + + definition + + + + + + + + IAO:0000116 + uberon + editor_note + true + editor_note + editor note + + + + + + + + + + + + + + + + + + + + term replaced by + + + + + + + + + + + + + + + + + + + + + + + uberon + dc-creator + true + dc-creator + creator + + + + + + + + + uberon + dc-source + true + dc-source + derived from resource + + + + + + + + subset_property + + + + + + + + consider + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + has_alternative_id + + + + + + + + has_broad_synonym + + + + + + + + database_cross_reference + + + + + + + + has_exact_synonym + + + + + + + + has_narrow_synonym + + + + + + + + has_obo_format_version + + + + + + + + has_obo_namespace + + + + + + + + has_related_synonym + + + + + + + + + + + + + + in_subset + + + + + + + + + + + + + + + + + + + + + + + + + + shorthand + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + BFO:0000050 + uberon + part_of + part_of + part of + + + + + + + + + BFO:0000051 + uberon + has_part + has_part + has part + + + + + + + + + X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X) + BFO:0000062 + is preceded by + takes place after + uberon + preceded_by + preceded_by + preceded_by + + + + + is preceded by + SIO:000249 + + + + + takes place after + Allen:precedes + + + + + + + + + BFO:0000063 + uberon + precedes + precedes + precedes + + + + + + + + BFO:0000067 + uberon + contains_process + contains_process + contains process + + + + + + + + RO:0000053 + uberon + bearer_of + bearer_of + bearer of + + + + + + + + + X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) + A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]. + RO:0002087 + directly preceded by + is directly preceded by + is immediately preceded by + starts_at_end_of + uberon + immediately_preceded_by + immediately_preceded_by + immediately_preceded_by + + + + + + A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]. + SIO:000251 + + + + + is immediately preceded by + SIO:000251 + + + + + + + + A overlaps B if they share some part in common. + BFO_0000051 some (BFO_0000050 some ?Y) + RO:0002131 + uberon + overlaps + overlaps + overlaps + + + + + + + + + RO:0002180 + uberon + has_component + has_component + has component + + + + + + + + + RO:0002215 + uberon + capable_of + capable_of + capable of + + + + + + + + + RO:0002216 + uberon + capable_of_part_of + capable_of_part_of + capable of part of + + + + + + + + RO:0002328 + uberon + functionally_related_to + functionally_related_to + functionally related to + + + + + + + + + + + + + RO:0002329 + uberon + part_of_structure_that_is_capable_of + part_of_structure_that_is_capable_of + part of structure that is capable of + + + + + + + + + RO:0002352 + uberon + input_of + input_of + input of + + + + + + + + + x composed_primarily_of y iff: more than half of the mass of x is made from parts of y + RO:0002473 + uberon + RO:0002473 + composed_primarily_of + composed_primarily_of + composed primarily of + + + + + + + + + + + + + Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. + + AAO:0010841 + AEO:0000000 + BILA:0000000 + BIRNLEX:6 + CARO:0000000 + EHDAA2:0002229 + FBbt:10000000 + FBbt_root:00000000 + FMA:62955 + HAO:0000000 + MA:0000001 + NCIT:C12219 + TAO:0100000 + TGMA:0001822 + UMLS:C1515976 + WBbt:0000100 + XAO:0000000 + ZFA:0100000 + uberon + UBERON:0001062 + + anatomical entity + + + + + Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. + + FMA:62955 + + + + + UMLS:C1515976 + ncithesaurus:Anatomic_Structure_System_or_Substance + - + diff --git a/src/ontology/imports/uberon_terms.txt b/src/ontology/imports/uberon_terms.txt new file mode 100644 index 00000000..7417ec87 --- /dev/null +++ b/src/ontology/imports/uberon_terms.txt @@ -0,0 +1,2 @@ +UBERON:0001062 + diff --git a/src/ontology/merged-pato-edit.obo b/src/ontology/merged-pato-edit.obo index a4c7eca5..27d92b48 100644 --- a/src/ontology/merged-pato-edit.obo +++ b/src/ontology/merged-pato-edit.obo @@ -12291,7 +12291,6 @@ def: "A curvature quality inhering in a bearer by virtue of the bearer's being c comment: TODO: obsolete, definition too ambiguous. subset: cell_quality subset: value_slim -synonym: "flared" EXACT [] is_a: PATO:0000406 ! curved [Term] @@ -17855,7 +17854,7 @@ creation_date: 2012-05-03T11:29:38Z [Term] id: PATO:0002372 -name: grand multi[arous +name: grand multiparous def: "A viviparous organism that has given birth five or more times." [wiki:http\://en.wikipedia.org/wiki/Parity_(biology)] subset: value_slim is_a: PATO:0002369 ! multiparous @@ -20370,11 +20369,53 @@ is_a: PATO:0000383 ! female property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-16T22:52:49Z xsd:dateTime +[Term] +id: PATO:0040021 +name: unpaired +def: "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.." [https://orcid.org/0000-0003-3162-7490] +is_a: PATO:0000467 ! present +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 + +[Term] +id: PATO:0040022 +name: flared +def: "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape." [] +is_a: PATO:0000052 ! shape +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:49:07Z xsd:dateTime + +[Term] +id: PATO:0040023 +name: distomedial orientation +def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body." [https://en.wiktionary.org/wiki/distomedial] +synonym: "disto-medial orientation" EXACT [] +synonym: "distomedial" EXACT [] +is_a: PATO:0000133 ! orientation +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:54:33Z xsd:dateTime + +[Term] +id: PATO:0040024 +name: bilaterally paired +def: "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism." [https://orcid.org/0000-0003-3162-7490] +synonym: "paired" BROAD [] +is_a: PATO:0000467 ! present +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 + [Term] id: PATO:0040025 name: lesioned def: "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present." [NCIT:C3824] is_a: PATO:0000141 ! structure +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 + +[Term] +id: PATO:0040026 +name: structurally discontinuous +def: "A structural quality inhering in a bearer by virtue of the bearer's being marked by interruptions or gaps." [] +comment: This term is intended for use for terms such as MP:0010461 discontinuous pulmonary artery and MP:0004157 interrupted aortic arch. +synonym: "structurally interrupted" EXACT [] +is_a: PATO:0001241 ! physical object quality created_by: http://orcid.org/0000-0001-5208-3432 [Term] diff --git a/src/ontology/ontologyterms.txt b/src/ontology/ontologyterms.txt index 32f50302..d898f1ad 100644 --- a/src/ontology/ontologyterms.txt +++ b/src/ontology/ontologyterms.txt @@ -1,8 +1,7 @@ term -http://purl.obolibrary.org/obo/PATO_0001030 -http://purl.obolibrary.org/obo/PATO_0001906 -http://purl.obolibrary.org/obo/PATO_0001034 -http://purl.obolibrary.org/obo/PATO_0001018 +http://purl.obolibrary.org/obo/PATO_0002274 +http://purl.obolibrary.org/obo/PATO_0001533 +http://purl.obolibrary.org/obo/PATO_0002273 http://purl.obolibrary.org/obo/PATO_0001807 http://purl.obolibrary.org/obo/PATO_0002305 http://purl.obolibrary.org/obo/PATO_0001806 @@ -11,42 +10,56 @@ http://purl.obolibrary.org/obo/PATO_0002303 http://purl.obolibrary.org/obo/PATO_0001241 http://purl.obolibrary.org/obo/PATO_0002300 http://purl.obolibrary.org/obo/PATO_0000085 -http://purl.obolibrary.org/obo/PATO_0002468 -http://purl.obolibrary.org/obo/PATO_0015008 -http://purl.obolibrary.org/obo/PATO_0000117 +http://purl.obolibrary.org/obo/PATO_0000515 +http://purl.obolibrary.org/obo/PATO_0002041 http://purl.obolibrary.org/obo/PATO_0001619 http://purl.obolibrary.org/obo/PATO_0001439 http://purl.obolibrary.org/obo/PATO_0001579 http://purl.obolibrary.org/obo/PATO_0001618 -http://purl.obolibrary.org/obo/PATO_0002521 -http://purl.obolibrary.org/obo/PATO_0000052 +http://purl.obolibrary.org/obo/PATO_0000461 +http://purl.obolibrary.org/obo/PATO_0001273 +http://purl.obolibrary.org/obo/PATO_0001523 +http://purl.obolibrary.org/obo/PATO_0001242 http://purl.obolibrary.org/obo/PATO_0001842 http://purl.obolibrary.org/obo/PATO_0000033 +http://purl.obolibrary.org/obo/PATO_0002328 +http://purl.obolibrary.org/obo/PATO_0002327 +http://purl.obolibrary.org/obo/PATO_0002326 +http://purl.obolibrary.org/obo/PATO_0001476 http://purl.obolibrary.org/obo/PATO_0000337 http://purl.obolibrary.org/obo/PATO_0000019 -http://purl.obolibrary.org/obo/PATO_0001766 http://purl.obolibrary.org/obo/PATO_0000001 +http://purl.obolibrary.org/obo/PATO_0002309 +http://purl.obolibrary.org/obo/PATO_0002226 +http://purl.obolibrary.org/obo/PATO_0000504 +http://purl.obolibrary.org/obo/PATO_0000505 +http://purl.obolibrary.org/obo/PATO_0000078 +http://purl.obolibrary.org/obo/PATO_0000460 +http://purl.obolibrary.org/obo/PATO_0000068 +http://purl.obolibrary.org/obo/PATO_0000395 +http://purl.obolibrary.org/obo/PATO_0000049 +http://purl.obolibrary.org/obo/PATO_0002515 +http://purl.obolibrary.org/obo/PATO_0001687 +http://purl.obolibrary.org/obo/PATO_0001655 +http://purl.obolibrary.org/obo/PATO_0002429 +http://purl.obolibrary.org/obo/PATO_0000052 http://purl.obolibrary.org/obo/PATO_0002001 http://purl.obolibrary.org/obo/PATO_0002083 http://purl.obolibrary.org/obo/PATO_0001555 http://purl.obolibrary.org/obo/PATO_0002002 http://purl.obolibrary.org/obo/PATO_0001999 -http://purl.obolibrary.org/obo/PATO_0000128 -http://purl.obolibrary.org/obo/PATO_0001035 -http://purl.obolibrary.org/obo/PATO_0001645 -http://purl.obolibrary.org/obo/PATO_0001598 -http://purl.obolibrary.org/obo/PATO_0000461 -http://purl.obolibrary.org/obo/PATO_0002102 -http://purl.obolibrary.org/obo/PATO_0001396 -http://purl.obolibrary.org/obo/PATO_0001294 -http://purl.obolibrary.org/obo/PATO_0001292 -http://purl.obolibrary.org/obo/PATO_0001856 -http://purl.obolibrary.org/obo/PATO_0000614 +http://purl.obolibrary.org/obo/PATO_0001892 +http://purl.obolibrary.org/obo/PATO_0001893 +http://purl.obolibrary.org/obo/PATO_0001331 +http://purl.obolibrary.org/obo/PATO_0002355 +http://purl.obolibrary.org/obo/PATO_0002354 +http://purl.obolibrary.org/obo/PATO_0002353 +http://purl.obolibrary.org/obo/PATO_0002331 http://purl.obolibrary.org/obo/PATO_0001485 http://purl.obolibrary.org/obo/PATO_0002452 http://purl.obolibrary.org/obo/PATO_0000141 -http://purl.obolibrary.org/obo/PATO_0001827 -http://purl.obolibrary.org/obo/PATO_0001894 +http://purl.obolibrary.org/obo/PATO_0002209 +http://purl.obolibrary.org/obo/PATO_0001419 http://purl.obolibrary.org/obo/PATO_0001651 http://purl.obolibrary.org/obo/PATO_0001178 http://purl.obolibrary.org/obo/PATO_0001046 @@ -60,124 +73,134 @@ http://purl.obolibrary.org/obo/PATO_0002364 http://purl.obolibrary.org/obo/PATO_0000051 http://purl.obolibrary.org/obo/PATO_0000319 http://purl.obolibrary.org/obo/PATO_0000014 -http://purl.obolibrary.org/obo/PATO_0001362 -http://purl.obolibrary.org/obo/PATO_0001716 -http://purl.obolibrary.org/obo/PATO_0001662 http://purl.obolibrary.org/obo/PATO_0001654 http://purl.obolibrary.org/obo/PATO_0001653 http://purl.obolibrary.org/obo/PATO_0001652 -http://purl.obolibrary.org/obo/PATO_0000395 -http://purl.obolibrary.org/obo/PATO_0000049 -http://purl.obolibrary.org/obo/PATO_0001005 -http://purl.obolibrary.org/obo/PATO_0000502 +http://purl.obolibrary.org/obo/PATO_0000613 +http://purl.obolibrary.org/obo/PATO_0000614 +http://purl.obolibrary.org/obo/PATO_0000330 +http://purl.obolibrary.org/obo/PATO_0002111 +http://purl.obolibrary.org/obo/PATO_0002099 +http://purl.obolibrary.org/obo/PATO_0015009 +http://purl.obolibrary.org/obo/PATO_0001547 +http://purl.obolibrary.org/obo/PATO_0002381 +http://purl.obolibrary.org/obo/PATO_0001609 +http://purl.obolibrary.org/obo/PATO_0000060 +http://purl.obolibrary.org/obo/PATO_0002377 +http://purl.obolibrary.org/obo/PATO_0002376 +http://purl.obolibrary.org/obo/PATO_0002014 +http://purl.obolibrary.org/obo/PATO_0001919 +http://purl.obolibrary.org/obo/PATO_0000628 +http://purl.obolibrary.org/obo/PATO_0000050 http://purl.obolibrary.org/obo/PATO_0000918 -http://purl.obolibrary.org/obo/PATO_0001710 -http://purl.obolibrary.org/obo/PATO_0000460 -http://purl.obolibrary.org/obo/PATO_0000068 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+http://purl.obolibrary.org/obo/PATO_0001022 +http://purl.obolibrary.org/obo/PATO_0015028 +http://purl.obolibrary.org/obo/PATO_0002035 +http://purl.obolibrary.org/obo/PATO_0002498 http://purl.obolibrary.org/obo/PATO_0002519 -http://purl.obolibrary.org/obo/PATO_0005009 -http://purl.obolibrary.org/obo/PATO_0002030 -http://purl.obolibrary.org/obo/PATO_0001703 -http://purl.obolibrary.org/obo/PATO_0002261 -http://purl.obolibrary.org/obo/PATO_0002299 -http://purl.obolibrary.org/obo/PATO_0005023 -http://purl.obolibrary.org/obo/PATO_0001421 -http://purl.obolibrary.org/obo/PATO_0002187 -http://purl.obolibrary.org/obo/PATO_0002438 -http://purl.obolibrary.org/obo/PATO_0001357 -http://purl.obolibrary.org/obo/PATO_0002385 -http://purl.obolibrary.org/obo/PATO_0000969 -http://purl.obolibrary.org/obo/PATO_0002128 -http://purl.obolibrary.org/obo/PATO_0001947 -http://purl.obolibrary.org/obo/PATO_0002113 -http://purl.obolibrary.org/obo/PATO_0010000 -http://purl.obolibrary.org/obo/PATO_0000609 +http://purl.obolibrary.org/obo/PATO_0000762 +http://purl.obolibrary.org/obo/PATO_0002389 +http://purl.obolibrary.org/obo/PATO_0001402 +http://purl.obolibrary.org/obo/PATO_0001964 +http://purl.obolibrary.org/obo/PATO_0015006 +http://purl.obolibrary.org/obo/PATO_0001518 +http://purl.obolibrary.org/obo/PATO_0002492 http://purl.obolibrary.org/obo/PATO_0001367 +http://purl.obolibrary.org/obo/PATO_0001469 +http://purl.obolibrary.org/obo/PATO_0002205 +http://purl.obolibrary.org/obo/PATO_0001773 +http://purl.obolibrary.org/obo/PATO_0001247 +http://purl.obolibrary.org/obo/PATO_0001258 +http://purl.obolibrary.org/obo/PATO_0001483 +http://purl.obolibrary.org/obo/PATO_0001855 +http://purl.obolibrary.org/obo/PATO_0001966 +http://purl.obolibrary.org/obo/PATO_0005010 +http://purl.obolibrary.org/obo/PATO_0001368 +http://purl.obolibrary.org/obo/PATO_0001320 +http://purl.obolibrary.org/obo/PATO_0000632 +http://purl.obolibrary.org/obo/PATO_0002503 +http://purl.obolibrary.org/obo/PATO_0001333 +http://purl.obolibrary.org/obo/PATO_0000367 +http://purl.obolibrary.org/obo/PATO_0002316 +http://purl.obolibrary.org/obo/PATO_0001971 +http://purl.obolibrary.org/obo/PATO_0002235 +http://purl.obolibrary.org/obo/PATO_0001467 +http://purl.obolibrary.org/obo/PATO_0001482 +http://purl.obolibrary.org/obo/PATO_0001841 +http://purl.obolibrary.org/obo/PATO_0002358 +http://purl.obolibrary.org/obo/PATO_0000588 +http://purl.obolibrary.org/obo/PATO_0040009 +http://purl.obolibrary.org/obo/PATO_0002344 +http://purl.obolibrary.org/obo/PATO_0001468 +http://purl.obolibrary.org/obo/PATO_0002103 +http://purl.obolibrary.org/obo/PATO_0001969 http://purl.obolibrary.org/obo/PATO_0001341 -http://purl.obolibrary.org/obo/PATO_0002256 -http://purl.obolibrary.org/obo/PATO_0001851 -http://purl.obolibrary.org/obo/PATO_0002244 +http://purl.obolibrary.org/obo/PATO_0001245 +http://purl.obolibrary.org/obo/PATO_0001972 +http://purl.obolibrary.org/obo/PATO_0001200 +http://purl.obolibrary.org/obo/PATO_0001758 +http://purl.obolibrary.org/obo/PATO_0001963 +http://purl.obolibrary.org/obo/PATO_0000276 +http://purl.obolibrary.org/obo/PATO_0002335 +http://purl.obolibrary.org/obo/PATO_0002215 +http://purl.obolibrary.org/obo/PATO_0002234 +http://purl.obolibrary.org/obo/PATO_0001770 +http://purl.obolibrary.org/obo/PATO_0002127 +http://purl.obolibrary.org/obo/PATO_0002155 http://purl.obolibrary.org/obo/PATO_0002169 -http://purl.obolibrary.org/obo/PATO_0001955 -http://purl.obolibrary.org/obo/PATO_0001474 -http://purl.obolibrary.org/obo/PATO_0001866 -http://purl.obolibrary.org/obo/PATO_0001704 -http://purl.obolibrary.org/obo/PATO_0002492 -http://purl.obolibrary.org/obo/PATO_0002470 -http://purl.obolibrary.org/obo/PATO_0001793 -http://purl.obolibrary.org/obo/PATO_0001982 -http://purl.obolibrary.org/obo/PATO_0002208 -http://purl.obolibrary.org/obo/PATO_0002004 -http://purl.obolibrary.org/obo/PATO_0001193 -http://purl.obolibrary.org/obo/PATO_0001432 -http://purl.obolibrary.org/obo/PATO_0001277 -http://purl.obolibrary.org/obo/PATO_0001525 -http://purl.obolibrary.org/obo/PATO_0000453 -http://purl.obolibrary.org/obo/PATO_0001934 -http://purl.obolibrary.org/obo/PATO_0002406 -http://purl.obolibrary.org/obo/PATO_0002480 -http://purl.obolibrary.org/obo/PATO_0002343 -http://purl.obolibrary.org/obo/PATO_0001453 -http://purl.obolibrary.org/obo/PATO_0002152 -http://purl.obolibrary.org/obo/PATO_0002350 -http://purl.obolibrary.org/obo/PATO_0001365 -http://purl.obolibrary.org/obo/PATO_0002165 -http://purl.obolibrary.org/obo/PATO_0001600 -http://purl.obolibrary.org/obo/PATO_0001991 -http://purl.obolibrary.org/obo/PATO_0002503 -http://purl.obolibrary.org/obo/PATO_0001804 -http://purl.obolibrary.org/obo/PATO_0002031 -http://purl.obolibrary.org/obo/PATO_0002417 -http://purl.obolibrary.org/obo/PATO_0002499 -http://purl.obolibrary.org/obo/PATO_0001751 -http://purl.obolibrary.org/obo/PATO_0002534 -http://purl.obolibrary.org/obo/PATO_0030006 -http://purl.obolibrary.org/obo/PATO_0001960 -http://purl.obolibrary.org/obo/PATO_0001473 -http://purl.obolibrary.org/obo/PATO_0001351 -http://purl.obolibrary.org/obo/PATO_0002487 -http://purl.obolibrary.org/obo/PATO_0002371 -http://purl.obolibrary.org/obo/PATO_0005024 -http://purl.obolibrary.org/obo/PATO_0002118 -http://purl.obolibrary.org/obo/PATO_0002162 -http://purl.obolibrary.org/obo/PATO_0001413 +http://purl.obolibrary.org/obo/PATO_0002066 +http://purl.obolibrary.org/obo/PATO_0002164 +http://purl.obolibrary.org/obo/PATO_0002408 +http://purl.obolibrary.org/obo/PATO_0001418 +http://purl.obolibrary.org/obo/PATO_0001597 +http://purl.obolibrary.org/obo/PATO_0000403 +http://purl.obolibrary.org/obo/PATO_0001399 +http://purl.obolibrary.org/obo/PATO_0001668 +http://purl.obolibrary.org/obo/PATO_0002437 +http://purl.obolibrary.org/obo/PATO_0001540 +http://purl.obolibrary.org/obo/PATO_0002402 +http://purl.obolibrary.org/obo/PATO_0002365 +http://purl.obolibrary.org/obo/PATO_0001802 +http://purl.obolibrary.org/obo/PATO_0002438 +http://purl.obolibrary.org/obo/PATO_0015001 +http://purl.obolibrary.org/obo/PATO_0001602 +http://purl.obolibrary.org/obo/PATO_0001288 +http://purl.obolibrary.org/obo/PATO_0002329 +http://purl.obolibrary.org/obo/PATO_0002374 +http://purl.obolibrary.org/obo/PATO_0001527 +http://purl.obolibrary.org/obo/PATO_0002088 +http://purl.obolibrary.org/obo/PATO_0000317 +http://purl.obolibrary.org/obo/PATO_0001436 +http://purl.obolibrary.org/obo/PATO_0002310 +http://purl.obolibrary.org/obo/PATO_0002091 +http://purl.obolibrary.org/obo/PATO_0002445 +http://purl.obolibrary.org/obo/PATO_0002401 +http://purl.obolibrary.org/obo/PATO_0000629 +http://purl.obolibrary.org/obo/PATO_0002095 +http://purl.obolibrary.org/obo/PATO_0001915 +http://purl.obolibrary.org/obo/PATO_0002049 +http://purl.obolibrary.org/obo/PATO_0001187 +http://purl.obolibrary.org/obo/PATO_0001491 +http://purl.obolibrary.org/obo/PATO_0002474 +http://purl.obolibrary.org/obo/PATO_0001205 +http://purl.obolibrary.org/obo/PATO_0000634 +http://purl.obolibrary.org/obo/PATO_0001382 +http://purl.obolibrary.org/obo/PATO_0001274 +http://purl.obolibrary.org/obo/PATO_0002204 http://purl.obolibrary.org/obo/PATO_0001283 -http://purl.obolibrary.org/obo/PATO_0001263 +http://purl.obolibrary.org/obo/PATO_0002170 +http://purl.obolibrary.org/obo/PATO_0001980 +http://purl.obolibrary.org/obo/PATO_0020002 +http://purl.obolibrary.org/obo/PATO_0001185 +http://purl.obolibrary.org/obo/PATO_0001353 +http://purl.obolibrary.org/obo/PATO_0001422 +http://purl.obolibrary.org/obo/PATO_0001535 +http://purl.obolibrary.org/obo/PATO_0001266 http://purl.obolibrary.org/obo/PATO_0002121 -http://purl.obolibrary.org/obo/PATO_0000434 -http://purl.obolibrary.org/obo/PATO_0002431 -http://purl.obolibrary.org/obo/PATO_0000409 -http://purl.obolibrary.org/obo/PATO_0001423 -http://purl.obolibrary.org/obo/PATO_0000771 -http://purl.obolibrary.org/obo/PATO_0040016 -http://purl.obolibrary.org/obo/PATO_0002173 -http://purl.obolibrary.org/obo/PATO_0001273 -http://purl.obolibrary.org/obo/PATO_0002430 -http://purl.obolibrary.org/obo/PATO_0001907 -http://purl.obolibrary.org/obo/PATO_0000442 -http://purl.obolibrary.org/obo/PATO_0001445 http://purl.obolibrary.org/obo/PATO_0001986 -http://purl.obolibrary.org/obo/PATO_0005002 -http://purl.obolibrary.org/obo/PATO_0001571 -http://purl.obolibrary.org/obo/PATO_0002107 -http://purl.obolibrary.org/obo/PATO_0001205 -http://purl.obolibrary.org/obo/PATO_0002092 -http://purl.obolibrary.org/obo/PATO_0001909 -http://purl.obolibrary.org/obo/PATO_0005017 -http://purl.obolibrary.org/obo/PATO_0002137 -http://purl.obolibrary.org/obo/PATO_0002035 -http://purl.obolibrary.org/obo/PATO_0001286 -http://purl.obolibrary.org/obo/PATO_0002315 -http://purl.obolibrary.org/obo/PATO_0001953 -http://purl.obolibrary.org/obo/PATO_0001819 -http://purl.obolibrary.org/obo/PATO_0000615 -http://purl.obolibrary.org/obo/PATO_0001680 -http://purl.obolibrary.org/obo/PATO_0002019 -http://purl.obolibrary.org/obo/PATO_0001332 -http://purl.obolibrary.org/obo/PATO_0002523 -http://purl.obolibrary.org/obo/PATO_0001608 -http://purl.obolibrary.org/obo/PATO_0001667 -http://purl.obolibrary.org/obo/PATO_0002230 -http://purl.obolibrary.org/obo/PATO_0002180 -http://purl.obolibrary.org/obo/PATO_0002089 -http://purl.obolibrary.org/obo/PATO_0001406 -http://purl.obolibrary.org/obo/PATO_0002122 -http://purl.obolibrary.org/obo/PATO_0001260 -http://purl.obolibrary.org/obo/PATO_0000276 -http://purl.obolibrary.org/obo/PATO_0002402 -http://purl.obolibrary.org/obo/PATO_0001281 -http://purl.obolibrary.org/obo/PATO_0001521 -http://purl.obolibrary.org/obo/PATO_0001429 -http://purl.obolibrary.org/obo/PATO_0002234 -http://purl.obolibrary.org/obo/PATO_0001745 -http://purl.obolibrary.org/obo/PATO_0001354 -http://purl.obolibrary.org/obo/PATO_0000403 -http://purl.obolibrary.org/obo/PATO_0001358 -http://purl.obolibrary.org/obo/PATO_0002110 -http://purl.obolibrary.org/obo/PATO_0002178 -http://purl.obolibrary.org/obo/PATO_0040017 -http://purl.obolibrary.org/obo/PATO_0002296 -http://purl.obolibrary.org/obo/PATO_0002512 -http://purl.obolibrary.org/obo/PATO_0002368 -http://purl.obolibrary.org/obo/PATO_0002500 -http://purl.obolibrary.org/obo/PATO_0002396 -http://purl.obolibrary.org/obo/PATO_0002444 -http://purl.obolibrary.org/obo/PATO_0001523 -http://purl.obolibrary.org/obo/PATO_0002449 -http://purl.obolibrary.org/obo/PATO_0001376 -http://purl.obolibrary.org/obo/PATO_0002207 -http://purl.obolibrary.org/obo/PATO_0002141 -http://purl.obolibrary.org/obo/PATO_0001267 -http://purl.obolibrary.org/obo/PATO_0002387 -http://purl.obolibrary.org/obo/PATO_0002520 +http://purl.obolibrary.org/obo/PATO_0015030 +http://purl.obolibrary.org/obo/PATO_0001284 +http://purl.obolibrary.org/obo/PATO_0002187 +http://purl.obolibrary.org/obo/PATO_0001277 +http://purl.obolibrary.org/obo/PATO_0005005 +http://purl.obolibrary.org/obo/PATO_0002219 +http://purl.obolibrary.org/obo/PATO_0001942 +http://purl.obolibrary.org/obo/PATO_0002152 +http://purl.obolibrary.org/obo/PATO_0001364 +http://purl.obolibrary.org/obo/PATO_0001259 http://purl.obolibrary.org/obo/PATO_0000904 http://purl.obolibrary.org/obo/PATO_0000714 http://purl.obolibrary.org/obo/PATO_0000524 @@ -2466,6 +2469,7 @@ http://purl.obolibrary.org/obo/PATO_0000959 http://purl.obolibrary.org/obo/PATO_0000579 http://purl.obolibrary.org/obo/PATO_0000199 http://purl.obolibrary.org/obo/PATO_0045045 +http://purl.obolibrary.org/obo/PATO_0040026 http://purl.obolibrary.org/obo/PATO_0000991 http://purl.obolibrary.org/obo/PATO_0000212 http://purl.obolibrary.org/obo/PATO_0001116 @@ -2677,6 +2681,7 @@ http://purl.obolibrary.org/obo/PATO_0000385 http://purl.obolibrary.org/obo/PATO_0000195 http://purl.obolibrary.org/obo/PATO_0001099 http://purl.obolibrary.org/obo/PATO_0045041 +http://purl.obolibrary.org/obo/PATO_0040022 http://purl.obolibrary.org/obo/PATO_0000728 http://purl.obolibrary.org/obo/PATO_0000538 http://purl.obolibrary.org/obo/PATO_0000348 diff --git a/src/ontology/pato-edit.obo b/src/ontology/pato-edit.obo index 9a98ade2..e676d4a1 100644 --- a/src/ontology/pato-edit.obo +++ b/src/ontology/pato-edit.obo @@ -20405,6 +20405,7 @@ synonym: "paired" BROAD [] is_a: PATO:0000467 ! present property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +[Term] id: PATO:0040025 name: lesioned def: "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present." [NCIT:C3824] diff --git a/src/ontology/pato-odk.yaml b/src/ontology/pato-odk.yaml new file mode 100644 index 00000000..d8ca6fa9 --- /dev/null +++ b/src/ontology/pato-odk.yaml @@ -0,0 +1,24 @@ +id: pato +title: "Phenotype And Trait Ontology" +github_org: pato-ontology +repo: pato +report_fail_on: none +edit_format: obo +export_formats: + - owl + - obo + - json +release_artefacts: + - base + - simple + - full +primary_release: base +import_group: + products: + - id: ro + - id: chebi + mirror_from: http://purl.obolibrary.org/obo/chebi.owl.gz + - id: go + - id: pco + - id: uberon +robot_java_args: '-Xmx8G' \ No newline at end of file diff --git a/src/ontology/pato.Makefile b/src/ontology/pato.Makefile index 83584815..a73c7ad7 100644 --- a/src/ontology/pato.Makefile +++ b/src/ontology/pato.Makefile @@ -3,3 +3,6 @@ ## If you need to customize your Makefile, make ## changes here rather than in the main Makefile +$(ONT).obo: $(ONT)-base.owl + $(ROBOT) annotate --input $< --ontology-iri $(URIBASE)/$@ --version-iri $(ONTBASE)/releases/$(TODAY)/$@ \ + convert --check false -f obo $(OBO_FORMAT_OPTIONS) -o $@.tmp.obo && grep -v ^owl-axioms $@.tmp.obo > $@ && rm $@.tmp.obo diff --git a/src/ontology/reports/README.md b/src/ontology/reports/README.md new file mode 100644 index 00000000..933492c7 --- /dev/null +++ b/src/ontology/reports/README.md @@ -0,0 +1,3 @@ +# Reports folder + +Files are added to this during the release process diff --git a/src/ontology/simple_seed.txt b/src/ontology/simple_seed.txt index 6c373bba..f630e48c 100644 --- a/src/ontology/simple_seed.txt +++ b/src/ontology/simple_seed.txt @@ -2643,7 +2643,12 @@ http://purl.obolibrary.org/obo/PATO_0040016 http://purl.obolibrary.org/obo/PATO_0040017 http://purl.obolibrary.org/obo/PATO_0040019 http://purl.obolibrary.org/obo/PATO_0040020 +http://purl.obolibrary.org/obo/PATO_0040021 +http://purl.obolibrary.org/obo/PATO_0040022 +http://purl.obolibrary.org/obo/PATO_0040023 +http://purl.obolibrary.org/obo/PATO_0040024 http://purl.obolibrary.org/obo/PATO_0040025 +http://purl.obolibrary.org/obo/PATO_0040026 http://purl.obolibrary.org/obo/PATO_0045000 http://purl.obolibrary.org/obo/PATO_0045001 http://purl.obolibrary.org/obo/PATO_0045002 diff --git a/src/ontology/tmp/README.md b/src/ontology/tmp/README.md new file mode 100644 index 00000000..1ad5315f --- /dev/null +++ b/src/ontology/tmp/README.md @@ -0,0 +1 @@ +# This folder contains files that are regenerated with every release to keep the src/ontology folder clean \ No newline at end of file diff --git a/src/scripts/update_repo.sh b/src/scripts/update_repo.sh new file mode 100644 index 00000000..491a49ac --- /dev/null +++ b/src/scripts/update_repo.sh @@ -0,0 +1,20 @@ +echo "This (experimental) update script will create a new repo according to your config file. It will:" +echo "(1) overwrite your repositories Makefile, ODK sparql queries (your custom queries wont be touched) and docker wrapper (run.sh)." +echo "(2) and add missing files, if any." + +set -e + +OID=pato +SRCDIR=../ +CONFIG=$OID"-odk.yaml" + +rm -rf target +mkdir target +/tools/odk.py seed -c -g False -C $CONFIG +ls -l target/$OID/src +ls -l $SRCDIR +rsync -r -u --ignore-existing target/$OID/src/ $SRCDIR +cp target/$OID/src/scripts/update_repo.sh $SRCDIR/scripts/ +cp target/$OID/src/ontology/Makefile $SRCDIR/ontology/ +cp target/$OID/src/ontology/run.sh $SRCDIR/ontology/ +cp -r target/$OID/src/sparql/* $SRCDIR/sparql/ \ No newline at end of file From 94ec1a242409192c9c8f7cd01c8977be9589e9cc Mon Sep 17 00:00:00 2001 From: matentzn Date: Tue, 29 Oct 2019 10:17:11 +0000 Subject: [PATCH 08/13] Update obo release --- pato.obo | 4 ++-- src/ontology/pato.Makefile | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/pato.obo b/pato.obo index e8a41468..6f2be253 100644 --- a/pato.obo +++ b/pato.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: pato/releases/2019-10-29/pato.obo +data-version: releases/2019-10-29/pato.obo date: 07:02:2018 10:27 saved-by: segerdel auto-generated-by: OBO-Edit 2.3.1 @@ -14,7 +14,7 @@ subsetdef: relational_slim "Relational slim: types of quality that require an ad subsetdef: scalar_slim "Scalar slim" subsetdef: value_slim "Value slim" default-namespace: quality -ontology: pato.obo +ontology: pato [Term] id: PATO:0000000 diff --git a/src/ontology/pato.Makefile b/src/ontology/pato.Makefile index a73c7ad7..7331c11b 100644 --- a/src/ontology/pato.Makefile +++ b/src/ontology/pato.Makefile @@ -3,6 +3,6 @@ ## If you need to customize your Makefile, make ## changes here rather than in the main Makefile -$(ONT).obo: $(ONT)-base.owl - $(ROBOT) annotate --input $< --ontology-iri $(URIBASE)/$@ --version-iri $(ONTBASE)/releases/$(TODAY)/$@ \ +$(ONT).obo: #$(ONT)-base.owl + $(ROBOT) annotate --input $(ONT)-base.owl --ontology-iri $(URIBASE)/$(ONT).owl --version-iri $(ONTBASE)/releases/$(TODAY)/$@ \ convert --check false -f obo $(OBO_FORMAT_OPTIONS) -o $@.tmp.obo && grep -v ^owl-axioms $@.tmp.obo > $@ && rm $@.tmp.obo From d5911034c494be5c1b11ed0eb3657cf13a179bd0 Mon Sep 17 00:00:00 2001 From: matentzn Date: Tue, 29 Oct 2019 10:41:57 +0000 Subject: [PATCH 09/13] New release --- pato-base.json | 3638 +++++++++------- pato-base.obo | 4 +- pato-base.owl | 2992 +++++++++++-- pato-full.json | 3786 +++++++++-------- pato-full.obo | 3 +- pato-full.owl | 2995 +++++++++++-- pato-simple.json | 1898 ++------- pato-simple.obo | 422 -- pato-simple.owl | 428 -- pato.json | 3716 +++++++++------- pato.obo | 1147 +---- pato.owl | 2995 +++++++++++-- reports/pato-edit.obo-obo-report.tsv | 18 - src/ontology/merged-pato-edit.obo | 4 +- src/ontology/ontologyterms.txt | 3008 ++++++------- src/ontology/pato-edit.obo | 4 +- src/ontology/pato.Makefile | 7 +- .../reports/pato-edit.obo-obo-report.tsv | 18 - src/ontology/simple_seed.txt | 1 + 19 files changed, 15794 insertions(+), 11290 deletions(-) diff --git a/pato-base.json b/pato-base.json index c1ee77a5..58c6ce03 100644 --- a/pato-base.json +++ b/pato-base.json @@ -32,9 +32,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000487" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -76,9 +73,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000488" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -485,9 +479,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000498" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -563,9 +554,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000499" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000715" @@ -1460,9 +1448,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001857" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -1848,9 +1833,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001716" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -2169,9 +2151,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001777" } ] }, "type" : "CLASS", @@ -2213,9 +2192,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001776" } ] }, "type" : "CLASS", @@ -2339,9 +2315,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001779" } ] }, "type" : "CLASS", @@ -2375,9 +2348,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001778" } ] }, "type" : "CLASS", @@ -2424,9 +2394,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000330" } ] }, "type" : "CLASS", @@ -2603,9 +2570,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001790" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -2789,9 +2753,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001308" } ] }, "type" : "CLASS", @@ -2838,9 +2799,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001307" } ] }, "type" : "CLASS", @@ -2880,9 +2838,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001306" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000678" @@ -2910,9 +2865,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000677" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001305" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -2994,9 +2946,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001782" } ] }, "type" : "CLASS", @@ -3125,9 +3074,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001783" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3158,9 +3104,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001313" } ] }, "type" : "CLASS", @@ -3276,9 +3219,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001795" } ] }, "type" : "CLASS", @@ -3299,9 +3239,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001311" } ] }, "type" : "CLASS", @@ -3332,9 +3269,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001314" } ] }, "type" : "CLASS", @@ -3355,9 +3289,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000462" } ] }, "type" : "CLASS", @@ -3371,9 +3302,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001319" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3402,9 +3330,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001318" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3455,9 +3380,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001788" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3512,9 +3434,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, "type" : "CLASS", @@ -3539,9 +3458,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "See documentation here: http://code.google.com/p/phenotype-ontologies/wiki/ModelingOfAbsence" @@ -3601,9 +3517,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001796" } ] }, "type" : "CLASS", @@ -3624,9 +3537,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000460" } ] }, "type" : "CLASS", @@ -3642,9 +3552,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001312" } ] }, "type" : "CLASS", @@ -3680,9 +3587,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000463" } ] }, "type" : "CLASS", @@ -3703,9 +3607,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000464" } ] }, "type" : "CLASS", @@ -3952,9 +3853,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001997" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000650" }, { @@ -4259,9 +4157,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000414" } ] }, "type" : "CLASS", @@ -4367,9 +4262,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001363" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000415" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -4406,9 +4298,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000892" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -4650,9 +4539,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001752" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -4750,9 +4636,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001742" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -4868,9 +4751,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001743" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -4916,9 +4796,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000404" } ] }, "type" : "CLASS", @@ -4990,9 +4867,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000402" } ] }, "type" : "CLASS", @@ -5062,9 +4936,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000890" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5105,9 +4976,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000891" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5141,9 +5009,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000888" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5226,9 +5091,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000423" } ] }, "type" : "CLASS", @@ -5277,9 +5139,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001749" } ] }, "type" : "CLASS", @@ -5306,9 +5165,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000422" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5398,9 +5254,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000427" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5436,9 +5289,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000428" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5555,9 +5405,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001764" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5605,9 +5452,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001760" } ] }, "type" : "CLASS", @@ -5641,9 +5485,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001765" } ] }, "type" : "CLASS", @@ -5756,9 +5597,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001227" } ] }, "type" : "CLASS", @@ -5783,9 +5621,6 @@ "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001762" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5799,9 +5634,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001761" } ] }, "type" : "CLASS", @@ -5826,9 +5658,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001763" } ] }, "type" : "CLASS", @@ -5985,9 +5814,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001706" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6064,9 +5890,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001707" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6117,9 +5940,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001699" } ] }, "type" : "CLASS", @@ -6233,9 +6053,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001501" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6352,9 +6169,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001362" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6473,9 +6287,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001715" } ] }, "type" : "CLASS", @@ -6515,9 +6326,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001714" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6533,9 +6341,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001713" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6566,9 +6371,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001712" } ] }, "type" : "CLASS", @@ -6746,6 +6548,19 @@ }, "type" : "CLASS", "lbl" : "obsolete fearful" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000877", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute respiratory rate value" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001725", "meta" : { @@ -6760,28 +6575,12 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001726" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", "lbl" : "increased male receptivity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000877", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete absolute respiratory rate value" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001726", "meta" : { @@ -6798,9 +6597,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001725" } ] }, "type" : "CLASS", @@ -6832,9 +6628,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001724" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6868,9 +6661,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001723" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -8054,9 +7844,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015022" } ] }, "type" : "CLASS", @@ -8107,9 +7894,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015023" } ] }, "type" : "CLASS", @@ -8140,9 +7924,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015027" } ] }, "type" : "CLASS", @@ -8156,9 +7937,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015024" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -8473,9 +8251,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015011" } ] }, "type" : "CLASS", @@ -8491,9 +8266,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015010" } ] }, "type" : "CLASS", @@ -8544,9 +8316,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015015" } ] }, "type" : "CLASS", @@ -8562,9 +8331,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015014" } ] }, "type" : "CLASS", @@ -8628,9 +8394,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002196" } ] }, "type" : "CLASS", @@ -8644,9 +8407,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002195" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" }, { @@ -8784,9 +8544,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002192" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-10T03:25:59Z" @@ -8811,9 +8568,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002191" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -8898,9 +8652,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002147" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-30T05:13:10Z" @@ -9013,9 +8764,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002139" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-26T01:22:27Z" @@ -9124,9 +8872,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002148" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" }, { @@ -9171,9 +8916,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002145" } ] }, "type" : "CLASS", @@ -9187,9 +8929,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002144" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-30T03:31:31Z" }, { @@ -9611,9 +9350,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015004" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "cjm" @@ -9632,9 +9368,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015003" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "cjm" @@ -10482,9 +10215,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002099" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" }, { @@ -10925,9 +10655,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001821" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000649" @@ -11410,9 +11137,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002140" } ] }, "type" : "CLASS", @@ -11828,9 +11552,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001700" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -11896,9 +11617,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001698" } ] }, "type" : "CLASS", @@ -11945,9 +11663,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001697" } ] }, "type" : "CLASS", @@ -12031,9 +11746,6 @@ }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "This refers to the disposition of the bearer." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001690" } ] }, "type" : "CLASS", @@ -12080,9 +11792,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001691" } ] }, "type" : "CLASS", @@ -12116,9 +11825,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001696" } ] }, "type" : "CLASS", @@ -12191,9 +11897,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001695" } ] }, "type" : "CLASS", @@ -12212,9 +11915,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001694" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -12253,9 +11953,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000370" } ] }, "type" : "CLASS", @@ -12322,9 +12019,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001693" } ] }, "type" : "CLASS", @@ -12381,9 +12075,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000438" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -12473,9 +12164,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000328" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -12493,9 +12181,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000365" } ] }, "type" : "CLASS", @@ -12542,9 +12227,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000375" } ] }, "type" : "CLASS", @@ -12643,9 +12325,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000374" } ] }, "type" : "CLASS", @@ -12659,9 +12338,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001863" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -12797,9 +12473,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000380" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -12824,9 +12497,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000381" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -12900,9 +12570,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001234" } ] }, "type" : "CLASS", @@ -12949,9 +12616,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001233" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -12969,9 +12633,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000386" } ] }, "type" : "CLASS", @@ -13013,9 +12674,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000387" } ] }, "type" : "CLASS", @@ -13508,9 +13166,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001657" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13578,9 +13233,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001654" } ] }, "type" : "CLASS", @@ -13685,9 +13337,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001653" } ] }, "type" : "CLASS", @@ -13706,9 +13355,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000665" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13819,9 +13465,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002527" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -13848,9 +13491,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001656" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13877,9 +13517,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001229" } ] }, "type" : "CLASS", @@ -13938,9 +13575,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001650" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14010,9 +13644,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001651" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14170,9 +13801,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001663" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14221,9 +13849,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000331" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000332" @@ -14466,9 +14091,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001670" } ] }, "type" : "CLASS", @@ -14484,9 +14106,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000440" } ] }, "type" : "CLASS", @@ -14520,9 +14139,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001664" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14620,9 +14236,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000336" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14640,9 +14253,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001678" } ] }, "type" : "CLASS", @@ -14677,9 +14287,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000344" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14716,9 +14323,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001677" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14734,9 +14338,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000345" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14757,9 +14358,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001676" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14837,9 +14435,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001675" } ] }, "type" : "CLASS", @@ -14960,9 +14555,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-03-11T11:28:39Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002491" } ] }, "type" : "CLASS", @@ -14982,9 +14574,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-03-11T11:29:22Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002504" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -15015,9 +14604,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001669" } ] }, "type" : "CLASS", @@ -15146,9 +14732,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001672" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15195,9 +14778,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001671" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15268,9 +14848,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001689" } ] }, "type" : "CLASS", @@ -15349,9 +14926,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001688" } ] }, "type" : "CLASS", @@ -15429,9 +15003,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001685" } ] }, "type" : "CLASS", @@ -15605,9 +15176,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001975" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15744,9 +15312,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001683" } ] }, "type" : "CLASS", @@ -15824,9 +15389,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001686" } ] }, "type" : "CLASS", @@ -15905,9 +15467,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001684" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15928,9 +15487,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001618" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15977,9 +15533,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001619" } ] }, "type" : "CLASS", @@ -16054,9 +15607,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001613" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16115,9 +15665,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001614" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16236,9 +15783,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001612" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16254,9 +15798,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000770" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16272,9 +15813,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001615" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16325,9 +15863,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000760" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16348,9 +15883,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000761" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16373,9 +15905,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001627" } ] }, "type" : "CLASS", @@ -16418,9 +15947,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001621" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16532,9 +16058,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001622" } ] }, "type" : "CLASS", @@ -16589,9 +16112,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001628" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16649,9 +16169,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001625" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -16686,9 +16203,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001624" } ] }, "type" : "CLASS", @@ -16715,9 +16229,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000769" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16763,9 +16274,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000308" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16783,9 +16291,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000309" } ] }, "type" : "CLASS", @@ -16799,9 +16304,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001638" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16874,9 +16376,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000299" } ] }, "type" : "CLASS", @@ -16955,9 +16454,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000304" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17075,9 +16571,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000303" } ] }, "type" : "CLASS", @@ -17104,9 +16597,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001639" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17122,9 +16612,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001636" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17155,9 +16642,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001635" } ] }, "type" : "CLASS", @@ -18231,9 +17715,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001603" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18281,24 +17762,6 @@ }, "type" : "CLASS", "lbl" : "obsolete vocalization value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000758", - "meta" : { - "definition" : { - "val" : "A balance quality inhering in a bearer by virtue of the bearer's lacking balance.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000757" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "unbalanced" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001602", "meta" : { @@ -18319,6 +17782,21 @@ }, "type" : "CLASS", "lbl" : "distended" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000758", + "meta" : { + "definition" : { + "val" : "A balance quality inhering in a bearer by virtue of the bearer's lacking balance.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "unbalanced" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000757", "meta" : { @@ -18328,9 +17806,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000758" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18350,9 +17825,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001604" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18433,9 +17905,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000709" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000708" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -18472,9 +17941,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000706" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000707" }, { @@ -18495,9 +17961,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000700" } ] }, "type" : "CLASS", @@ -18521,9 +17984,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000701" } ] }, "type" : "CLASS", @@ -18795,9 +18255,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002068" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-07-01T02:33:41Z" @@ -18837,9 +18294,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002069" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-07-01T02:31:53Z" @@ -18967,9 +18421,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002075" } ] }, "type" : "CLASS", @@ -18991,9 +18442,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002074" } ] }, "type" : "CLASS", @@ -19048,9 +18496,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002071" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-09-18T01:30:11Z" @@ -19117,9 +18562,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002072" } ] }, "type" : "CLASS", @@ -19380,9 +18822,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002100" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -19585,9 +19024,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002028" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-01-27T10:56:19Z" @@ -19632,9 +19068,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002029" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-01-27T10:55:33Z" @@ -19720,9 +19153,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001171" } ] }, "type" : "CLASS", @@ -19798,9 +19228,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001818" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2008-12-18T12:49:19Z" }, { @@ -19915,9 +19342,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001172" } ] }, "type" : "CLASS", @@ -19936,9 +19360,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000639" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-02-03T11:14:54Z" }, { @@ -19960,9 +19381,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002040" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -20354,9 +19772,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002042" } ] }, "type" : "CLASS", @@ -20429,9 +19844,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001192" } ] }, "type" : "CLASS", @@ -20467,9 +19879,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002043" } ] }, "type" : "CLASS", @@ -20622,9 +20031,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001194" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -20643,9 +20049,6 @@ "val" : "Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx" } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002039" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -20743,9 +20146,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002056" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-26T04:01:37Z" @@ -20769,9 +20169,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002051" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-26T11:12:35Z" }, { @@ -20819,9 +20216,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002057" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-30T04:12:11Z" @@ -20864,9 +20258,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-26T04:02:14Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002055" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -20888,9 +20279,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002058" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-30T04:11:43Z" @@ -20936,9 +20324,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002052" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" }, { @@ -21531,9 +20916,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-09-15T12:05:06Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002471" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -21660,9 +21042,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002472" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-09-15T12:03:45Z" }, { @@ -21829,9 +21208,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000300" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -21941,9 +21317,6 @@ }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "Use this term or an is_a child of this term when the entire shape of the object is known." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002008" } ] }, "type" : "CLASS", @@ -21962,9 +21335,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002007" } ] }, "type" : "CLASS", @@ -22107,9 +21477,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001153" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -22185,9 +21552,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001152" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -22388,9 +21752,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002002" - }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type." }, { @@ -22433,9 +21794,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002364" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -22472,9 +21830,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002001" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001560" }, { @@ -22553,9 +21908,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002017" } ] }, "type" : "CLASS", @@ -22615,9 +21967,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002018" } ] }, "type" : "CLASS", @@ -22638,9 +21987,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-10T05:14:37Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002495" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -22665,9 +22011,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001162" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -22703,9 +22046,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002494" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -22810,9 +22150,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001163" } ] }, "type" : "CLASS", @@ -22843,24 +22180,6 @@ }, "type" : "CLASS", "lbl" : "anteroventral orientation" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001167", - "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001168" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "damaged" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002498", "meta" : { @@ -22887,6 +22206,21 @@ }, "type" : "CLASS", "lbl" : "medial orientation" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001167", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "damaged" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002014", "meta" : { @@ -22954,9 +22288,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001167" } ] }, "type" : "CLASS", @@ -23099,6 +22430,19 @@ "id" : "http://www.geneontology.org/formats/oboInOwl#SubsetProperty", "type" : "PROPERTY", "lbl" : "subset_property" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001160", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete unconcentrated" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002491", "meta" : { @@ -23113,9 +22457,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002526" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -23128,19 +22469,6 @@ }, "type" : "CLASS", "lbl" : "anterodorsal orientation" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001160", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete unconcentrated" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000246", "meta" : { @@ -23191,9 +22519,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001577" } ] }, "type" : "CLASS", @@ -23284,9 +22609,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001575" } ] }, "type" : "CLASS", @@ -23354,9 +22676,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001578" } ] }, "type" : "CLASS", @@ -23558,9 +22877,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001576" } ] }, "type" : "CLASS", @@ -23820,9 +23136,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001588" } ] }, "type" : "CLASS", @@ -23908,9 +23221,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001587" } ] }, "type" : "CLASS", @@ -24030,9 +23340,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001580" } ] }, "type" : "CLASS", @@ -24086,9 +23393,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001581" } ] }, "type" : "CLASS", @@ -24249,9 +23553,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001584" } ] }, "type" : "CLASS", @@ -24317,9 +23618,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001583" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -24660,9 +23958,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001593" } ] }, "type" : "CLASS", @@ -24678,9 +23973,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001592" } ] }, "type" : "CLASS", @@ -24783,9 +24075,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001472" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001666" }, { @@ -24921,9 +24210,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002442" } ] }, "type" : "CLASS", @@ -25036,9 +24322,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002441" } ] }, "type" : "CLASS", @@ -25455,9 +24738,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-08T08:43:31Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001485" } ] }, "type" : "CLASS", @@ -25640,9 +24920,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000695" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -25754,9 +25031,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001537" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -25790,9 +25064,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000690" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000429" }, { @@ -25879,9 +25150,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001538" } ] }, "type" : "CLASS", @@ -26032,9 +25300,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001544" } ] }, "type" : "CLASS", @@ -26209,9 +25474,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001545" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -26277,9 +25539,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001550" } ] }, "type" : "CLASS", @@ -26396,9 +25655,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000689" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000426" }, { @@ -26549,9 +25805,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000688" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -26855,9 +26108,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001553" } ] }, "type" : "CLASS", @@ -27117,9 +26367,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001551" } ] }, "type" : "CLASS", @@ -27174,9 +26421,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001554" } ] }, "type" : "CLASS", @@ -27214,9 +26458,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001549" } ] }, "type" : "CLASS", @@ -27254,9 +26495,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001552" } ] }, "type" : "CLASS", @@ -27293,9 +26531,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001566" } ] }, "type" : "CLASS", @@ -27431,9 +26666,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001567" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001513" @@ -27634,9 +26866,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001562" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000578" @@ -27806,9 +27035,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000579" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001563" } ] }, "type" : "CLASS", @@ -27860,9 +27086,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000651" } ] }, "type" : "CLASS", @@ -27906,9 +27129,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001206" } ] }, "type" : "CLASS", @@ -27936,9 +27156,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000645" } ] }, "type" : "CLASS", @@ -28061,9 +27278,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000644" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -28266,9 +27480,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001701" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -28634,9 +27845,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000642" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -28791,9 +27999,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000468" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000470" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -28854,9 +28059,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001511" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -28894,9 +28096,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000327" } ] }, "type" : "CLASS", @@ -28929,9 +28128,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001640" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001510" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -29600,9 +28796,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000610" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -29668,9 +28861,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001931" } ] }, "type" : "CLASS", @@ -29686,9 +28876,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001930" } ] }, "type" : "CLASS", @@ -29715,9 +28902,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000599" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -29933,9 +29117,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000633" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -30053,9 +29234,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000608" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -30063,29 +29241,26 @@ "type" : "CLASS", "lbl" : "open" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000613", + "id" : "http://purl.obolibrary.org/obo/PATO_0001945", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A moderate yellow-orange to orange color.", + "xrefs" : [ "wordreference:wordreference" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000614" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "disoriented" + "lbl" : "ochre" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001945", + "id" : "http://purl.obolibrary.org/obo/PATO_0000613", "meta" : { "definition" : { - "val" : "A moderate yellow-orange to orange color.", - "xrefs" : [ "wordreference:wordreference" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -30094,7 +29269,7 @@ } ] }, "type" : "CLASS", - "lbl" : "ochre" + "lbl" : "disoriented" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001946", "meta" : { @@ -30164,38 +29339,35 @@ "type" : "CLASS", "lbl" : "wholly anterioralized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000614", + "id" : "http://purl.obolibrary.org/obo/PATO_0001944", "meta" : { "definition" : { - "val" : "A pattern where all the repeated elements are oriented in the same direction.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A color consisting of yellow and orange hue.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000613" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "oriented" + "lbl" : "yellow orange" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001944", + "id" : "http://purl.obolibrary.org/obo/PATO_0000614", "meta" : { "definition" : { - "val" : "A color consisting of yellow and orange hue.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A pattern where all the repeated elements are oriented in the same direction.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "yellow orange" + "lbl" : "oriented" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000628", "meta" : { @@ -30261,9 +29433,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001957" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -30294,9 +29463,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001861" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -30512,9 +29678,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001958" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -30754,9 +29917,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002038" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -30890,9 +30050,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000619" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -31225,9 +30382,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-09-25T15:11:47Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0005013" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -31252,9 +30406,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "wasila.dahdul" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0005012" } ] }, "type" : "CLASS", @@ -31420,6 +30571,10 @@ }, "type" : "CLASS", "lbl" : "multinucleate" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#consider", + "type" : "PROPERTY", + "lbl" : "consider" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001901", "meta" : { @@ -31429,19 +30584,12 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001900" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", "lbl" : "back" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#consider", - "type" : "PROPERTY", - "lbl" : "consider" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001902", "meta" : { @@ -31466,9 +30614,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001901" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -31741,9 +30886,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001926" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -31802,9 +30944,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001927" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -32396,9 +31535,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-07-05T03:18:03Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002383" } ] }, "type" : "CLASS", @@ -32434,9 +31570,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002382" } ] }, "type" : "CLASS", @@ -32743,9 +31876,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002394" } ] }, "type" : "CLASS", @@ -32790,9 +31920,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002393" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-11-15T05:33:05Z" @@ -33039,9 +32166,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Luke Slater" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0045093" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-12-22T14:16:43Z" @@ -33066,9 +32190,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Luke Slater" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0045094" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -33103,9 +32224,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0045091" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -33143,9 +32261,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Luke Slater" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0045092" } ] }, "type" : "CLASS", @@ -33647,9 +32762,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001494" } ] }, "type" : "CLASS", @@ -33747,9 +32859,6 @@ }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001493" } ] }, "type" : "CLASS", @@ -34667,9 +33776,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002354" } ] }, "type" : "CLASS", @@ -34814,9 +33920,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-31T04:52:04Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002355" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -35068,9 +34171,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-03-16T06:32:57Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002361" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -35228,9 +34328,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002362" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-03-16T06:31:57Z" }, { @@ -35292,9 +34389,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0025002" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -35368,53 +34462,50 @@ "type" : "CLASS", "lbl" : "obsolete consumption quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0025002", + "id" : "http://purl.obolibrary.org/obo/PATO_0001035", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration.", - "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "drinkable", + "val" : "force amplitude", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0025001" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2015-09-01T16:19:02Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "pbuttigieg" } ] }, "type" : "CLASS", - "lbl" : "potable" + "lbl" : "force" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001035", + "id" : "http://purl.obolibrary.org/obo/PATO_0025002", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.", - "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration.", + "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "force amplitude", + "val" : "drinkable", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2015-09-01T16:19:02Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "pbuttigieg" } ] }, "type" : "CLASS", - "lbl" : "force" + "lbl" : "potable" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000186", "meta" : { @@ -35482,9 +34573,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001154" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -35900,9 +34988,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001046" } ] }, "type" : "CLASS", @@ -36078,9 +35163,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002376" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -36115,9 +35197,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001043" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -36224,9 +35303,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-07-05T02:55:10Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002377" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -36564,9 +35640,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -36652,9 +35725,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-06-16T06:54:01Z" @@ -36676,9 +35746,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001456" } ] }, "type" : "CLASS", @@ -36691,9 +35758,6 @@ "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-06-16T06:50:59Z" }, { @@ -36730,9 +35794,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001455" } ] }, "type" : "CLASS", @@ -36745,9 +35806,6 @@ "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" }, { @@ -36857,9 +35915,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001460" } ] }, "type" : "CLASS", @@ -36970,9 +36025,6 @@ "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -37021,9 +36073,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-06-16T06:40:15Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002300" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -37643,9 +36692,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001459" } ] }, "type" : "CLASS", @@ -38212,9 +37258,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002328" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-23T12:06:38Z" }, { @@ -38374,9 +37417,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-23T12:06:54Z" @@ -38446,9 +37486,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001596" } ] }, "type" : "CLASS", @@ -38569,9 +37606,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001476" } ] }, "type" : "CLASS", @@ -38601,9 +37635,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-10-12T12:51:19Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002321" } ] }, "type" : "CLASS", @@ -38629,6 +37660,19 @@ }, "type" : "CLASS", "lbl" : "temporal distribution quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000142", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete substance" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001476", "meta" : { @@ -38643,28 +37687,12 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001475" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", "lbl" : "decreased position" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000142", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete substance" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002320", "meta" : { @@ -38759,9 +37787,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002322" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-10-12T12:50:59Z" @@ -39375,9 +38400,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002334" } ] }, "type" : "CLASS", @@ -39467,9 +38489,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002333" } ] }, "type" : "CLASS", @@ -39552,9 +38571,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002332" } ] }, "type" : "CLASS", @@ -39590,9 +38606,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001840" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002452" } ] }, "type" : "CLASS", @@ -39619,9 +38632,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-31T12:28:57Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002331" } ] }, "type" : "CLASS", @@ -39835,9 +38845,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001896" } ] }, "type" : "CLASS", @@ -39879,9 +38886,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001899" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -39914,9 +38918,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001412" } ] }, "type" : "CLASS", @@ -39945,9 +38946,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001897" } ] }, "type" : "CLASS", @@ -39981,9 +38979,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001411" } ] }, "type" : "CLASS", @@ -40002,9 +38997,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000570" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -40022,9 +39014,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001416" } ] }, "type" : "CLASS", @@ -40066,9 +39055,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001898" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -40101,9 +39087,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001417" } ] }, "type" : "CLASS", @@ -40139,9 +39122,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001892" } ] }, "type" : "CLASS", @@ -40256,9 +39236,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001893" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -40607,9 +39584,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000569" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -40696,9 +39670,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000573" } ] }, "type" : "CLASS", @@ -40729,9 +39700,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000574" } ] }, "type" : "CLASS", @@ -40839,9 +39807,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000586" } ] }, "type" : "CLASS", @@ -40921,9 +39886,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001202" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000587" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -41221,9 +40183,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000582" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -41250,9 +40209,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000583" } ] }, "type" : "CLASS", @@ -41288,9 +40244,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000412" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000584" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -41327,9 +40280,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000585" } ] }, "type" : "CLASS", @@ -41534,9 +40484,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000600" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -41682,9 +40629,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000591" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -41719,9 +40663,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000592" } ] }, "type" : "CLASS", @@ -41815,9 +40756,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000595" } ] }, "type" : "CLASS", @@ -41868,9 +40806,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000596" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -41947,9 +40882,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001860" } ] }, "type" : "CLASS", @@ -42108,9 +41040,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001355" } ] }, "type" : "CLASS", @@ -42364,9 +41293,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000389" } ] }, "type" : "CLASS", @@ -42510,9 +41436,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001859" } ] }, "type" : "CLASS", @@ -42531,9 +41454,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001959" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -42718,9 +41638,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000546" } ] }, "type" : "CLASS", @@ -42765,9 +41682,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000547" } ] }, "type" : "CLASS", @@ -43004,9 +41918,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001884" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -43078,9 +41989,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001885" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -43098,9 +42006,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001886" } ] }, "type" : "CLASS", @@ -43183,9 +42088,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001887" } ] }, "type" : "CLASS", @@ -43471,39 +42373,36 @@ "type" : "CLASS", "lbl" : "obsolete u v light sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001817", + "id" : "http://purl.obolibrary.org/obo/PATO_0000969", "meta" : { "definition" : { - "val" : "A fatigability which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally small.", + "xrefs" : [ "Answers.com:Answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low fatigability", + "val" : "dwarfed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001816" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased fatigability" + "lbl" : "dwarf-like" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000969", + "id" : "http://purl.obolibrary.org/obo/PATO_0001817", "meta" : { "definition" : { - "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally small.", - "xrefs" : [ "Answers.com:Answers.com" ] + "val" : "A fatigability which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "dwarfed", + "val" : "low fatigability", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -43512,7 +42411,7 @@ } ] }, "type" : "CLASS", - "lbl" : "dwarf-like" + "lbl" : "decreased fatigability" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001818", "meta" : { @@ -43522,9 +42421,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002026" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -43573,9 +42469,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001817" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -43665,9 +42558,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000964" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -43735,9 +42625,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000963" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -43931,9 +42818,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001825" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -43999,9 +42883,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002112" } ] }, "type" : "CLASS", @@ -44069,9 +42950,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001823" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44100,9 +42978,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001826" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44148,9 +43023,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001824" } ] }, "type" : "CLASS", @@ -44210,9 +43082,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001838" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44274,9 +43143,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001839" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44310,9 +43176,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001830" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44328,9 +43191,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000982" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44351,9 +43211,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001833" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44374,9 +43231,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000983" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44407,9 +43261,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000984" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44425,9 +43276,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000985" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44448,9 +43296,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001831" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44501,9 +43346,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001834" } ] }, "type" : "CLASS", @@ -44585,9 +43427,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001832" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44603,9 +43442,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000504" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44641,9 +43477,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001835" } ] }, "type" : "CLASS", @@ -44670,9 +43503,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000505" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44847,9 +43677,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001844" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45043,9 +43870,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000516" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45066,9 +43890,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001843" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45089,9 +43910,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000513" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45335,21 +44153,15 @@ "val" : "RO:0002604" } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#is_class_level", - "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "is_opposite_of" } ] }, "type" : "PROPERTY", - "lbl" : "is opposite of" + "lbl" : "is_opposite_of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000936", "meta" : { @@ -45392,9 +44204,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000937" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45410,9 +44219,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000938" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45727,9 +44533,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001808" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45815,9 +44618,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001807" } ] }, "type" : "CLASS", @@ -45973,9 +44773,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000955" } ] }, "type" : "CLASS", @@ -45991,9 +44788,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000956" } ] }, "type" : "CLASS", @@ -46315,9 +45109,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000911" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -46338,9 +45129,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000912" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -46403,9 +45191,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002220" } ] }, "type" : "CLASS", @@ -47021,9 +45806,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002271" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-10-26T02:00:20Z" @@ -47061,9 +45843,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002270" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-10-26T02:04:45Z" @@ -47111,9 +45890,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002286" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-03-10T09:07:57Z" @@ -47138,9 +45914,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002285" } ] }, "type" : "CLASS", @@ -47162,9 +45935,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002282" } ] }, "type" : "CLASS", @@ -47228,9 +45998,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-03-30T11:50:21Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002288" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -47255,9 +46022,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002287" } ] }, "type" : "CLASS", @@ -47301,9 +46065,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002283" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -47373,9 +46134,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002298" } ] }, "type" : "CLASS", @@ -47432,9 +46190,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002297" } ] }, "type" : "CLASS", @@ -47820,9 +46575,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002263" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -48016,9 +46768,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002222" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-07-09T01:51:52Z" @@ -48103,9 +46852,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-07-09T01:54:22Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002221" } ] }, "type" : "CLASS", @@ -48739,9 +47485,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002248" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-08-09T04:17:04Z" @@ -48802,9 +47545,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002249" } ] }, "type" : "CLASS", @@ -49028,9 +47768,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002246" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -49103,9 +47840,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002245" } ] }, "type" : "CLASS", @@ -49457,9 +48191,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-08-09T04:17:19Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002251" } ] }, "type" : "CLASS", @@ -49509,9 +48240,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002250" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-08-09T04:17:37Z" @@ -49769,18 +48497,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001163", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001159" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001247", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001163", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001159" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002332", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002331" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001381", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002017", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001280", "pred" : "is_a", @@ -49789,14 +48525,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001756", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001585" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002029", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002028" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001053" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001700", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001699" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002038", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000639" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002441", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002442" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001848", "pred" : "is_a", @@ -49849,6 +48601,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000937", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000938" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000328", "pred" : "is_a", @@ -49897,6 +48653,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000632", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000440" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001691", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001690" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002252", "pred" : "is_a", @@ -50013,10 +48773,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002355", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002354" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000947", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002318" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002246", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002245" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001712", "pred" : "is_a", @@ -50033,10 +48801,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001862", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000274" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002028", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002029" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002026", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001818" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002339", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000454" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001975", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001206" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002332" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001515", "pred" : "is_a", @@ -50049,6 +48833,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001779", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001808", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001807" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045065", "pred" : "is_a", @@ -50085,6 +48873,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000409", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001460", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001459" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001921", "pred" : "is_a", @@ -50093,6 +48885,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002221", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002221" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000050", "pred" : "is_a", @@ -50101,6 +48897,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001593", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001592" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000599", "pred" : "is_a", @@ -50117,6 +48917,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000415", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001794" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001690", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001691" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000708", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000706" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002260", "pred" : "is_a", @@ -50125,6 +48933,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045087", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045000" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000938", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000937" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045091", "pred" : "is_a", @@ -50145,6 +48957,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001473", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000470" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001581", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001580" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001890", "pred" : "is_a", @@ -50205,6 +49021,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002464", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002039", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002040" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001713", "pred" : "is_a", @@ -50229,18 +49049,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002179", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002322", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002321" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002189", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001516", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001632", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001516", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001465", "pred" : "is_a", @@ -50250,17 +49078,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001590" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", + "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045070", "pred" : "is_a", @@ -50281,6 +49109,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001290" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000592" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001241", "pred" : "is_a", @@ -50293,6 +49125,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001400", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002249", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002248" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001549", "pred" : "is_a", @@ -50361,18 +49197,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000070", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0001555" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001790", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001788" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002250", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002248" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001966", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002334", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002333" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001986", "pred" : "is_a", @@ -50389,6 +49233,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001475", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0025002", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0025001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001863", "pred" : "is_a", @@ -50401,6 +49253,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001233", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001234" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001584", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001583" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002332", "pred" : "is_a", @@ -50417,6 +49277,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0030000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000646" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000600", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002371", "pred" : "is_a", @@ -50429,6 +49293,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001294", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001292" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001694" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001578", "pred" : "is_a", @@ -50465,6 +49333,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001393", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001374" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002139", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002247", "pred" : "is_a", @@ -50497,6 +49369,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001242" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002220", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002263" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002248", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002249" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000375" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001401", "pred" : "is_a", @@ -50505,22 +49389,42 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000911", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002442", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002441" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000386", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000387" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002333", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002334" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001620", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002018", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002017" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001248", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001380", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002321", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002322" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000955" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001380", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000066", "pred" : "is_a", @@ -50557,14 +49461,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001728", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001727" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001678", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001029" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001625", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001559" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001678", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001029" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001281", "pred" : "is_a", @@ -50577,6 +49481,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000068", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000592", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000591" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001650", "pred" : "is_a", @@ -50609,6 +49517,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001657", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015022", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015023" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001611", "pred" : "is_a", @@ -50661,6 +49573,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002538", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002005" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001229", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000328" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002486", "pred" : "is_a", @@ -50689,6 +49605,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002042", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001715" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001583", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001584" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", "pred" : "is_a", @@ -50750,17 +49670,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002067" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", + "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001230" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001230" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001539", "pred" : "is_a", @@ -50785,14 +49705,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001773", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001643", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001178" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001643", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001402", "pred" : "is_a", @@ -50801,6 +49721,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001542", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001817", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001816" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001171", "pred" : "is_a", @@ -50817,10 +49741,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001599", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002376", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001318", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000189" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001927" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002452", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001485" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", "pred" : "is_a", @@ -50885,6 +49821,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001948", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002255" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002001", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002002" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002362", "pred" : "is_a", @@ -50897,6 +49837,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000169", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045093", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045091" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002002", "pred" : "is_a", @@ -50925,14 +49869,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001964", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002507", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000998", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000992" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002507", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001493", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001494" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0025001", "pred" : "is_a", @@ -50941,6 +49889,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002029", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000470", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001997" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002338", "pred" : "is_a", @@ -50949,6 +49901,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002478", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001410" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045092", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045094" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000083", "pred" : "is_a", @@ -51017,14 +49973,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002367", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000384" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002367", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000384" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001362", "pred" : "is_a", @@ -51045,6 +50001,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045082", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001818", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002026" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001806", "pred" : "is_a", @@ -51065,6 +50025,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001655", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001817" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000596", "pred" : "is_a", @@ -51089,6 +50053,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001607", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001846" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002472", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002471" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001645", "pred" : "is_a", @@ -51101,6 +50069,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001390", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001389" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001701", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001501" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001764", "pred" : "is_a", @@ -51109,6 +50081,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001726", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001721" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001707", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001706" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001788", "pred" : "is_a", @@ -51137,6 +50113,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002474", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001329" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002364", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001154" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001965", "pred" : "is_a", @@ -51149,22 +50129,34 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002351", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002145", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002144" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002140", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002138" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045091", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045093" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002541", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002460", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001152" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001431" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002460", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000261", "pred" : "is_a", @@ -51173,6 +50165,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002482", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000438", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001227" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000336", "pred" : "is_a", @@ -51229,6 +50225,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001901", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001900" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002188", "pred" : "is_a", @@ -51253,6 +50253,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0025000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001807", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001808" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002148", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002147" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001359", "pred" : "is_a", @@ -51261,6 +50269,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000625" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002354", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002355" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045044", "pred" : "is_a", @@ -51281,6 +50293,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000381", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000380" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001832", "pred" : "is_a", @@ -51289,14 +50305,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001614", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000467", "pred" : "is_a", @@ -51333,10 +50349,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001499", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002221", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000911", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000912" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001808", "pred" : "is_a", @@ -51345,6 +50369,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000060", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002246" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001595", "pred" : "is_a", @@ -51389,6 +50417,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001803", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000927" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001472", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001596" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001592", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001593" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002497", "pred" : "is_a", @@ -51397,6 +50433,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002483", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001580", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001581" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001962", "pred" : "is_a", @@ -51445,14 +50485,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002265", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002365", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000383" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002185", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002183" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002365", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000383" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000646", "pred" : "is_a", @@ -51461,6 +50501,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001244", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000380", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000381" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001168", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001167" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000945", "pred" : "is_a", @@ -51489,6 +50537,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002269", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002377", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002376" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001927", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001926" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045031", "pred" : "is_a", @@ -51593,10 +50649,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002271", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001699", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001700" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045094", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045092" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", "pred" : "is_a", @@ -51625,6 +50689,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001762", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000279" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001959", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001861" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002147", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002148" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001888", "pred" : "is_a", @@ -51642,21 +50714,49 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001963", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002002", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001206", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001975" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001903", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001963", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001494", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001493" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000911" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002148", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001154", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002364" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000082", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001167", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001168" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000708" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005013", "pred" : "is_a", @@ -51685,6 +50785,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000070", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000068" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001227", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000438" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000440", "pred" : "is_a", @@ -51725,14 +50829,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002026", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001243", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002026", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002228", "pred" : "is_a", @@ -51749,6 +50853,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000582", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002245" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000599", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000600" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002050", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", @@ -51761,6 +50869,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000300", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001046", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001043" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001055", "pred" : "is_a", @@ -51777,10 +50889,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000625", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000370", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000365" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001324", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000619", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000633" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000608", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000610" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045006", "pred" : "is_a", @@ -51821,6 +50945,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000406", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001591" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001958", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001957" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002139", "pred" : "is_a", @@ -51845,6 +50973,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002467", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001618" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", "pred" : "is_a", @@ -51877,6 +51009,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002157", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001852" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002251", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002250" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000927", "pred" : "is_a", @@ -51893,6 +51029,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001026", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002287", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002288" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000119", "pred" : "is_a", @@ -51901,10 +51041,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000614", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000613" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002058" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001389", "pred" : "is_a", @@ -51913,6 +51061,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000463", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001998" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002069", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002068" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001375", "pred" : "is_a", @@ -51949,6 +51101,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001487", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000505", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000504" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002322", "pred" : "is_a", @@ -51957,6 +51113,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001398", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002102" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001162", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001163" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001341", "pred" : "is_a", @@ -51965,6 +51125,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000773", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000189" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002250", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002251" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001462", "pred" : "is_a", @@ -51997,6 +51161,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001960", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001825", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001826" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002220", "pred" : "is_a", @@ -52073,6 +51241,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002335", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001619" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001715", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001714" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002383", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002382" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", "pred" : "is_a", @@ -52093,6 +51273,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000150", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001859", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001860" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000614", "pred" : "is_a", @@ -52101,6 +51285,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000700", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000701" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001872", "pred" : "is_a", @@ -52117,6 +51305,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001749", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002056", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002055" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002286", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002285" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001376", "pred" : "is_a", @@ -52125,6 +51321,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000631", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002068", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002069" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002298", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002297" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005018", "pred" : "is_a", @@ -52141,6 +51345,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045041", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000300", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001378", "pred" : "is_a", @@ -52193,6 +51401,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001546", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002198" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002382", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002383" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001586", "pred" : "is_a", @@ -52225,6 +51437,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002074", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001824", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001406", "pred" : "is_a", @@ -52237,6 +51453,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001796", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001958" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001946", "pred" : "is_a", @@ -52253,6 +51473,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001704", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001424" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001839", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001838" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002465", "pred" : "is_a", @@ -52289,14 +51513,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001301" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001961", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001934", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001961", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002495", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002494" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002362", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002361" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045004", "pred" : "is_a", @@ -52309,6 +51541,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001242", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002469", "pred" : "is_a", @@ -52333,6 +51569,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045032", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002471", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002472" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030005", "pred" : "is_a", @@ -52357,6 +51597,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002349", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002144", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002145" }, { "sub" : "http://purl.obolibrary.org/obo/pato#has_divisor_quality", "pred" : "subPropertyOf", @@ -52365,6 +51609,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005017", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000955", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000956" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000701", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000700" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000546", "pred" : "is_a", @@ -52413,10 +51665,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002342", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002227" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001043", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001046" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001989", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001591" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001152", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001153" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000328", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001229" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000937", "pred" : "is_a", @@ -52449,22 +51713,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001440", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001531" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002376", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001855", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002163", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002376", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001645" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002163", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001645" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001570", "pred" : "is_a", @@ -52509,14 +51773,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001984", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001900", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001901" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002355", "pred" : "is_a", @@ -52530,13 +51798,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002027" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0040014", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001825" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045009", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040014", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002150", "pred" : "is_a", @@ -52557,6 +51829,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001838", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001839" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000389", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001863" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001868", "pred" : "is_a", @@ -52581,6 +51861,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002494", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002495" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001863", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000389" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002361", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002362" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002181", "pred" : "is_a", @@ -52633,6 +51925,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000380", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000044" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002058", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002057" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002288", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002287" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001870", "pred" : "is_a", @@ -52641,6 +51941,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001337", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001895" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000956", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000955" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001388", "pred" : "is_a", @@ -52685,6 +51989,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001486", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001163", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001162" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001827", "pred" : "is_a", @@ -52773,6 +52081,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002070" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001638" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040006", "pred" : "is_a", @@ -52805,6 +52117,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045067", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002271", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002270" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000665", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000327" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002009", "pred" : "is_a", @@ -52813,6 +52133,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001152", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001043" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000513", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000516" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002282" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001178", "pred" : "is_a", @@ -52837,6 +52165,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000410", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000985", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000984" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001167", "pred" : "is_a", @@ -52861,10 +52193,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002375", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000428", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000427" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001397", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001194", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001192" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001494", "pred" : "is_a", @@ -52873,6 +52213,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045080", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002146" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002271" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045060", "pred" : "is_a", @@ -52881,6 +52225,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002242", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002282", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002283" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001581", "pred" : "is_a", @@ -52905,6 +52253,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001603", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001604" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040001", "pred" : "is_a", @@ -52913,6 +52265,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001627", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001628" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002256", "pred" : "is_a", @@ -52925,6 +52281,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002396", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001930", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001931" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001723" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001615", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001614" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002147", "pred" : "is_a", @@ -52949,6 +52317,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001035" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001833", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001832" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001637", "pred" : "is_a", @@ -52957,6 +52329,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002285", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001712", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001713" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001942", "pred" : "is_a", @@ -53021,14 +52397,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001997", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000992", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001548" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001997", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002348", "pred" : "is_a", @@ -53037,6 +52413,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000078", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002323" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002052", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001710", "pred" : "is_a", @@ -53053,10 +52433,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000308", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000309" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001192", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001194" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000274", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001434" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000404", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000415" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001249", "pred" : "is_a", @@ -53065,14 +52457,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045061", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000921" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045021", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001408", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045021", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000273", "pred" : "is_a", @@ -53089,6 +52481,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001335", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001895" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000888", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000892" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002333", "pred" : "is_a", @@ -53097,6 +52493,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001608", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0025001", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0025002" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002051", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001614", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001615" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001472", "pred" : "is_a", @@ -53105,6 +52513,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0020000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000047" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001832", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001833" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002221", "pred" : "is_a", @@ -53121,6 +52533,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001639" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001759", "pred" : "is_a", @@ -53133,6 +52549,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000303", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002040", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002039" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002246", "pred" : "is_a", @@ -53157,6 +52577,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001844", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001843" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001723", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001724" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002105", "pred" : "is_a", @@ -53185,10 +52613,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000760", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001726", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001725" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001815" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002394", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002393" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002088", "pred" : "is_a", @@ -53221,6 +52657,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000516" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001171", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001172" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001360", "pred" : "is_a", @@ -53233,6 +52673,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000609", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000610" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002285", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002286" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001997", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000470" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", @@ -53245,14 +52693,38 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001260", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000951" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002043", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002042" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002297", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002298" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001621", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000963", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000964" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002055", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002056" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000639", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002038" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001749", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005006", "pred" : "is_a", @@ -53265,6 +52737,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001289", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001287" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000757", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000758" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001922", "pred" : "is_a", @@ -53285,18 +52761,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001395", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001394" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000309", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000308" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001172", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001171" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000643", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001598" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002138", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002393", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002394" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002050", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002138", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045013", "pred" : "is_a", @@ -53317,6 +52805,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002100", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001714", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001715" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045026", "pred" : "is_a", @@ -53325,14 +52817,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001873", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002132", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000946", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002132", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001384", "pred" : "is_a", @@ -53345,6 +52837,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001605", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001835", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001834" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001468", "pred" : "is_a", @@ -53365,6 +52861,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001768", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002140", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002139" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001482", "pred" : "is_a", @@ -53377,6 +52877,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002104", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001823", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001824" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000299", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000300" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002380", "pred" : "is_a", @@ -53405,6 +52913,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000152" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001355", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001851", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -53421,6 +52933,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001914", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001912" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001628", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001627" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002526", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002491" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000308", "pred" : "is_a", @@ -53442,9 +52962,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002042", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002043" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001923", "pred" : "is_a", @@ -53453,6 +52973,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", "pred" : "is_a", @@ -53477,6 +53001,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002340", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002339" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000964", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000963" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002240", "pred" : "is_a", @@ -53489,6 +53017,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001288", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001287" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000613", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001201", "pred" : "is_a", @@ -53497,14 +53029,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000504", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000505" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001168", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001020" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000516", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000513" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000423", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000056" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000758", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000757" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002450", "pred" : "is_a", @@ -53521,6 +53065,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001872", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000413" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002263", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002131", "pred" : "is_a", @@ -53545,6 +53093,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001580", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001690" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000769", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000770" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001725", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001726" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002414", "pred" : "is_a", @@ -53553,6 +53109,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001715", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000574" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001713", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001712" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002164", "pred" : "is_a", @@ -53569,6 +53129,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001604", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001603" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002031", "pred" : "is_a", @@ -53589,30 +53153,38 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002453", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001835" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002172", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001786" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002279", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002278" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002299", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002078" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002101", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002279", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002278" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002306", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002101", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002262", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001931", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001930" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000037", "pred" : "is_a", @@ -53653,6 +53225,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002055", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001307" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", "pred" : "is_a", @@ -53669,6 +53245,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002282", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002504", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002527" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001696", "pred" : "is_a", @@ -53685,6 +53265,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001549", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001550" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001349", "pred" : "is_a", @@ -53705,6 +53289,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002223", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000303", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001688", "pred" : "is_a", @@ -53753,18 +53341,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001552", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001457" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045073", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045051", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001323" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045073", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001739", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000689", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000690" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001543", "pred" : "is_a", @@ -53777,6 +53369,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001664", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002072", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002071" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001917", "pred" : "is_a", @@ -53793,10 +53389,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001950", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000944" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001417", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001416" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001538", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045058", "pred" : "is_a", @@ -53845,6 +53449,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015002" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001635", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001636" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", "pred" : "is_a", @@ -53853,6 +53461,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045028", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000891" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000633", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000619" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000584", "pred" : "is_a", @@ -53889,22 +53501,34 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000048" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000982", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000983" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001319", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001318" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002385", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001410" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000546", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000547" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002343", "pred" : "is_a", @@ -53917,6 +53541,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002392", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000304", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002198", "pred" : "is_a", @@ -53929,6 +53557,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002347", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002021" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001669", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001670" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", @@ -53949,6 +53581,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002098", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000642", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000651" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002305", "pred" : "is_a", @@ -53961,6 +53597,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001544", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001543" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000414", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002272", "pred" : "is_a", @@ -54017,6 +53657,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001464", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002071", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002072" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001575", "pred" : "is_a", @@ -54029,6 +53673,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002046", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002192", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002191" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001191", "pred" : "is_a", @@ -54065,6 +53713,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001988", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001416", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001417" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040025", "pred" : "is_a", @@ -54073,6 +53725,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000119" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001538" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001369", "pred" : "is_a", @@ -54081,6 +53737,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001695", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001779", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001778" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001987", "pred" : "is_a", @@ -54089,6 +53749,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002067", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000569", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000570" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001307", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001308" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001751", "pred" : "is_a", @@ -54097,6 +53765,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001622", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001621" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001743", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001742" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002239", "pred" : "is_a", @@ -54105,14 +53781,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002303", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002110", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002373", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002110", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002300", "pred" : "is_a", @@ -54141,10 +53817,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002425", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000644", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000645" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000582", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000128" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002196", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002195" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001488", "pred" : "is_a", @@ -54153,6 +53837,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002276", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001533" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002075", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002074" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000983", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000982" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000570", "pred" : "is_a", @@ -54169,6 +53861,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001842" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000547", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000546" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002438", "pred" : "is_a", @@ -54193,6 +53889,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001444", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001442" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000415", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002294", "pred" : "is_a", @@ -54265,14 +53965,38 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001566" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002074", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002075" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002195", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002196" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001831", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001830" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045048", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001843", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001844" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001613", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001612" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045055" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001625", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001624" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001461", "pred" : "is_a", @@ -54297,14 +54021,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015017" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000161", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002062" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000039", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000161", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002062" + "sub" : "http://purl.obolibrary.org/obo/PATO_0005013", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0005012" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001835", "pred" : "is_a", @@ -54365,6 +54093,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001865", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000610", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000608" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002304", "pred" : "is_a", @@ -54385,6 +54117,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002230", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000402", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000414" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000984", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000985" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002096", "pred" : "is_a", @@ -54445,6 +54185,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002315", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000427", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", "pred" : "is_a", @@ -54453,6 +54197,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045035", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001655" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000644" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001445", "pred" : "is_a", @@ -54509,14 +54257,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001333", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045013", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001229", "pred" : "is_a", @@ -54570,21 +54318,29 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000040" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045049", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001636", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001635" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001193", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045054" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001193", + "sub" : "http://purl.obolibrary.org/obo/PATO_0045049", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001258", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000954" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001830", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001831" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045023", "pred" : "is_a", @@ -54593,10 +54349,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002352", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001729" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001613" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001624", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001625" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", "pred" : "is_a", @@ -54605,6 +54369,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001879", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0005012", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0005013" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000405", "pred" : "is_a", @@ -54673,6 +54441,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001832", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000651", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000642" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002041", "pred" : "is_a", @@ -54749,6 +54521,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000370", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001510", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001511" }, { "sub" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "pred" : "subPropertyOf", @@ -54785,6 +54561,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001409", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001897", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001896" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045054", "pred" : "is_a", @@ -54809,6 +54589,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001352", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001019" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001887" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002357", "pred" : "is_a", @@ -54821,10 +54605,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002461", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002165" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001764", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001765" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002051", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001777" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002533", "pred" : "is_a", @@ -54845,6 +54637,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000017", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001301" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000892", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000888" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045042", "pred" : "is_a", @@ -54885,6 +54681,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001459", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001460" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001813", "pred" : "is_a", @@ -54921,6 +54721,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002040", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001355" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000760", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000761" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000395", "pred" : "is_a", @@ -54937,14 +54741,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001598" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002424", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002313", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002424", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000622", "pred" : "is_a", @@ -54957,6 +54761,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002437", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002527", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002504" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002076", "pred" : "is_a", @@ -55021,6 +54829,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001347", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001335" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001859" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001192", "pred" : "is_a", @@ -55069,10 +54881,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045045", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001741" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001749" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001951", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001886" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000336", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000331" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001278", "pred" : "is_a", @@ -55089,6 +54913,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001562", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000125" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001678", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001677" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001671", "pred" : "is_a", @@ -55101,6 +54929,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045043", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045040" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001896", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001897" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001541", "pred" : "is_a", @@ -55109,14 +54941,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001814", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002345", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001814", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045034", "pred" : "is_a", @@ -55133,6 +54965,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001654", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001653" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045055", "pred" : "is_a", @@ -55145,10 +54981,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001545", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001412", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001411" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001763", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001760" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040026", "pred" : "is_a", @@ -55161,14 +55009,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001890", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000633", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002075", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000633", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001843", "pred" : "is_a", @@ -55185,14 +55033,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000638", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002430", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000638", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002062", "pred" : "is_a", @@ -55237,26 +55085,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001830", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002135", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000502" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002180", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002167", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002135", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001646" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000502" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002456", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002167", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001646" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002327", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002456", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000499", "pred" : "is_a", @@ -55277,6 +55125,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002336", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000760" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002039", "pred" : "is_a", @@ -55285,6 +55137,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001377", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001393" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000422", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000423" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002008", "pred" : "is_a", @@ -55341,6 +55197,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002191", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002192" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001547", "pred" : "is_a", @@ -55377,22 +55237,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040017", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001433" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001561", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001564" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001657", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001656" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001519", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001705", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001424" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001714", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001334" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001705", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001424" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001268", "pred" : "is_a", @@ -55413,6 +55281,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040022", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001318", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001319" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001621", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001622" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", @@ -55421,6 +55297,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002202", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002201" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001743" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", "pred" : "is_a", @@ -55437,6 +55317,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001779" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001887", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001885" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001899", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001898" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001581", "pred" : "is_a", @@ -55445,10 +55333,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002241", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001979" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001362", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001716" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001604", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001779" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002431", "pred" : "is_a", @@ -55465,18 +55361,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001470", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002000", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001999" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002000", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001999" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002422", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001788", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001790" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002203", "pred" : "is_a", @@ -55485,14 +55385,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002314", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002292", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002182", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002292", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001831", "pred" : "is_a", @@ -55521,6 +55421,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002435", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000423", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000422" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002389", "pred" : "is_a", @@ -55553,6 +55457,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001477", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002491", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002526" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002099", "pred" : "is_a", @@ -55601,6 +55509,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045045", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000688", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000695" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001821", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002112" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001548", "pred" : "is_a", @@ -55641,6 +55557,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001776" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001450", "pred" : "is_a", @@ -55649,6 +55569,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045089", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045088" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001898", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001899" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001780", "pred" : "is_a", @@ -55697,22 +55621,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001305", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001306" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001919", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001657" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001430", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/PATO_0002212" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001430", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002324", "pred" : "is_a", @@ -55721,6 +55653,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002253", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000407" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001886", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045065", "pred" : "is_a", @@ -55733,6 +55669,14 @@ "sub" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001511", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001510" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001765", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001764" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000763", "pred" : "is_a", @@ -55749,6 +55693,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001699", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000062" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000695", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000688" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000320", "pred" : "is_a", @@ -55757,6 +55705,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000461", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000068" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002304", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001412", "pred" : "is_a", @@ -55769,6 +55721,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001665", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000331", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000336" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000574" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001652", "pred" : "is_a", @@ -55805,14 +55765,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002251", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000487" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001189", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015003", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015004" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002144", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002327" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002481", "pred" : "is_a", @@ -55821,6 +55793,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001636", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001634" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000464", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000463" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000585", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000584" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", "pred" : "is_a", @@ -55837,6 +55817,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001975", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001976" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015015", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002504", "pred" : "is_a", @@ -55905,10 +55889,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045068", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001663", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001664" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001783", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001651", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001650" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001676" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001782", "pred" : "is_a", @@ -55925,6 +55921,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002183", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001892" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002468", "pred" : "is_a", @@ -55953,6 +55953,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001760", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001763" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002539", "pred" : "is_a", @@ -55985,14 +55989,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000983", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000970" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001250", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000320" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001900", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001250", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000320" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000956", "pred" : "is_a", @@ -56005,6 +56009,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000117" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001553" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001567", "pred" : "is_a", @@ -56017,14 +56025,38 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001796", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001795" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001566", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001567" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001716", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001362" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000502" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001578", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001577" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001276", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000321" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001312", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001311" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002303", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000460", "pred" : "is_a", @@ -56033,6 +56065,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001423", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001372" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015028", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015027" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000344", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000345" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001787", "pred" : "is_a", @@ -56041,6 +56081,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000982", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000970" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000586", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000955", "pred" : "is_a", @@ -56065,14 +56109,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001188", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001758", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001757" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001748", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001758", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001757" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001746", "pred" : "is_a", @@ -56097,6 +56141,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001504", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001502" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000573" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001579", "pred" : "is_a", @@ -56109,6 +56157,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001417", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015003" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002327", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001807", "pred" : "is_a", @@ -56149,6 +56205,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001533", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000019" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001650", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001651" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001651", "pred" : "is_a", @@ -56157,6 +56217,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002134", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001311", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001312" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000056", "pred" : "is_a", @@ -56181,10 +56245,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001927", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001795", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002496", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001783", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001782" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001553", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001554" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001901", "pred" : "is_a", @@ -56214,13 +56290,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002196", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001892", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001893" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0050001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002196", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002019", "pred" : "is_a", @@ -56277,22 +56357,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000701", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001686", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001685" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000122" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001577", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001578" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001275", "pred" : "is_a", @@ -56301,10 +56389,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001698", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001697" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002268", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002099", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002100" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001456", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001455" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000125", "pred" : "is_a", @@ -56321,6 +56421,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015026", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000890", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000891" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002630", "pred" : "is_a", @@ -56337,6 +56441,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001482", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015007" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000440", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002284", "pred" : "is_a", @@ -56373,6 +56481,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001199", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000587", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001525", "pred" : "is_a", @@ -56381,14 +56493,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001717", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001674", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001480", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -56457,18 +56569,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002235", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001500" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000345", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000344" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002214", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001979" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001743", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001741" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001606", "pred" : "is_a", @@ -56497,6 +56613,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001954", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001199" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001411", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001412" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001856", "pred" : "is_a", @@ -56517,6 +56637,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002399", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001653", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001654" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002387", "pred" : "is_a", @@ -56569,10 +56693,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000588", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002100", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000967", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001689", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001688" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001052", "pred" : "is_a", @@ -56602,13 +56734,29 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001762", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001761" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001677", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001161", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001544", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001545" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001314", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001313" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005024", "pred" : "is_a", @@ -56649,6 +56797,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000984", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000973" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002305", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002383", "pred" : "is_a", @@ -56657,6 +56809,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001411", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000891", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000890" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001512", "pred" : "is_a", @@ -56677,6 +56833,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001538", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001861", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001959" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001429", "pred" : "is_a", @@ -56709,18 +56869,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001474", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000327", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000665" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040021", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002503", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001576", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001025" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002503", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001405", "pred" : "is_a", @@ -56733,6 +56897,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001670", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001152" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000467", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000462" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002411", "pred" : "is_a", @@ -56773,6 +56941,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001782", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001501", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001701" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045067", "pred" : "is_a", @@ -56785,6 +56957,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002243", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001574" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001761", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001762" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001892", "pred" : "is_a", @@ -56809,14 +56985,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002205", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002194", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002226", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002194", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001912", "pred" : "is_a", @@ -56889,6 +57065,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000770", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000769" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002254", "pred" : "is_a", @@ -56913,14 +57093,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001264", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045086", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000403", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045086", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000321", "pred" : "is_a", @@ -56929,6 +57109,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045084" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001664", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001663" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001688", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001689" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001676", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001675" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001313", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001314" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001567", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001566" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001566", "pred" : "is_a", @@ -56941,6 +57141,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002353", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000460", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001185", "pred" : "is_a", @@ -56969,6 +57173,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000505", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000375", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000374" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002381", "pred" : "is_a", @@ -57013,6 +57221,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045063", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015011", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015010" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002521", "pred" : "is_a", @@ -57033,6 +57245,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001719", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015023", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015022" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002231", "pred" : "is_a", @@ -57069,6 +57285,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001547" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000387", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000386" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001874", "pred" : "is_a", @@ -57081,22 +57301,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001290", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002534", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001753", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002534", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002123", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001535", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001533" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002123", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002300", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001432", "pred" : "is_a", @@ -57113,6 +57337,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001578", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001549" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045050", "pred" : "is_a", @@ -57125,6 +57353,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001698", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001683", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001684" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002428", "pred" : "is_a", @@ -57133,6 +57365,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002191", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002190" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001695", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001696" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001562", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001563" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001741", "pred" : "is_a", @@ -57153,6 +57393,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001491", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001749" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015010", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002165", "pred" : "is_a", @@ -57161,6 +57405,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002108", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000623" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001671", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001672" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045023", "pred" : "is_a", @@ -57189,6 +57437,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002036", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000690", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000689" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045005", "pred" : "is_a", @@ -57225,6 +57477,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002480", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001448" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000582", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000583" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000330", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000440" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000365", "pred" : "is_a", @@ -57257,10 +57517,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001296", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002008", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001454", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000085" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000461", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000460" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000632", "pred" : "is_a", @@ -57341,6 +57609,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001524", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001520" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001857", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001355" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002513", "pred" : "is_a", @@ -57365,6 +57637,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001741" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001670", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001669" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001621", "pred" : "is_a", @@ -57381,14 +57657,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001887", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001886" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001754", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002535", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001754", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045084", "pred" : "is_a", @@ -57413,6 +57689,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001693" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", "pred" : "is_a", @@ -57421,6 +57701,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001929", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001485", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002452" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002143", "pred" : "is_a", @@ -57469,14 +57753,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045060", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002011", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002073", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002011", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001284", "pred" : "is_a", @@ -57493,6 +57777,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002037", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000570", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000569" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001970", "pred" : "is_a", @@ -57509,10 +57797,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002041" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001596", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001472" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045024", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001035" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001476", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001234", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001233" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001195", "pred" : "is_a", @@ -57533,6 +57833,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000700", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", "pred" : "is_a", @@ -57541,6 +57845,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000915" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000498", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000499" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000331", "pred" : "is_a", @@ -57565,6 +57873,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001905", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0002050" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000583", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000582" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002515", "pred" : "is_a", @@ -57577,6 +57889,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002524", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000595", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000596" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000600", "pred" : "is_a", @@ -57645,30 +57961,54 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001316", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002302", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001654", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001652" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015025", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015024" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002168", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045092", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045090" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002149", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001788" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045092", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045090" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001782", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001783" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001459" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001685", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001686" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001455", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001456" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001993", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001992" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001552", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001551" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040020", "pred" : "is_a", @@ -57677,6 +58017,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002417", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001697", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001698" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", "pred" : "is_a", @@ -57697,14 +58041,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001321", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", @@ -57773,6 +58117,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000608", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000136" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001576", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001575" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001510", "pred" : "is_a", @@ -57801,6 +58149,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002290" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001588", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001587" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002301", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045090", "pred" : "is_a", @@ -57821,10 +58177,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000957", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000487", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000488" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000463", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000464" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002520", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000584", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000585" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000586", "pred" : "is_a", @@ -57833,6 +58201,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000499", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000498" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015014", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015015" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002224", "pred" : "is_a", @@ -57841,6 +58217,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001328", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001325" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000365", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000370" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030003", "pred" : "is_a", @@ -57849,6 +58229,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001437", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001435" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000596", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000595" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001889", "pred" : "is_a", @@ -57877,14 +58261,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001317", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002070", "pred" : "is_a", @@ -57921,6 +58305,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001697", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001551", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001552" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001671" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002156", "pred" : "is_a", @@ -57933,6 +58325,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001322", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001587", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001588" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001563", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001562" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001684", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001683" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001577", "pred" : "is_a", @@ -57941,6 +58345,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001852", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002181" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001575", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001576" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002035", "pred" : "is_a", @@ -57965,6 +58373,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001680", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000918" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002112", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001821" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001801", "pred" : "is_a", @@ -57993,6 +58405,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001511", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001696", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001695" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000367", "pred" : "is_a", diff --git a/pato-base.obo b/pato-base.obo index 2e868be9..29e2b9ab 100644 --- a/pato-base.obo +++ b/pato-base.obo @@ -21723,10 +21723,8 @@ namespace: pato.ontology [Typedef] id: is_opposite_of -name: is opposite of +name: is_opposite_of xref: RO:0002604 -is_metadata_tag: true -is_class_level: true [Typedef] id: is_unit_of diff --git a/pato-base.owl b/pato-base.owl index 1cc5e546..daf59c4b 100644 --- a/pato-base.owl +++ b/pato-base.owl @@ -54,20 +54,6 @@ - - - - RO:0002604 - quality - is_opposite_of - true - true - is_opposite_of - is opposite of - - - - @@ -294,18 +280,6 @@ - - - - - - - - - - - - @@ -382,6 +356,18 @@ + + + + RO:0002604 + quality + is_opposite_of + is_opposite_of + is_opposite_of + + + + @@ -4672,9 +4658,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely. - quality PATO:0000299 @@ -4694,8 +4685,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely. - quality fixed PATO:0000300 @@ -4750,8 +4746,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A speed which is relatively high. - high speed quality fast speed @@ -4784,8 +4785,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A speed which is relatively low. - slow slow speed quality @@ -4839,8 +4845,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An age which is relatively high. - quality PATO:0000308 @@ -4859,8 +4870,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An age which is relatively low. - quality PATO:0000309 @@ -5138,8 +5154,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color brightness which is relatively low. - dark quality PATO:0000327 @@ -5159,8 +5180,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color saturation which is of low purity. - pale quality dull @@ -5201,8 +5227,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency. - quality PATO:0000330 @@ -5223,8 +5254,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color. - quality PATO:0000331 @@ -5294,8 +5330,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color quality inhering in a bearer by virtue of the bearer's having color. - PATO:0000332 quality pigmented @@ -5403,9 +5444,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A compatibility quality inhering in a bearer by virtue of the bearer's being capable of harmonious coexistence. - quality PATO:0000344 @@ -5426,8 +5472,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A compatibility quality inhering in a bearer by virtue of the bearer's being incapable of harmonious coexistence. - quality PATO:0000345 @@ -5657,8 +5708,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point. - quality PATO:0000365 @@ -5737,8 +5793,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point. - quality PATO:0000370 @@ -5802,8 +5863,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A distance which is greater relative to the normal or average. - quality long distance PATO:0000374 @@ -5836,8 +5902,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A distance which is lesser relative to the normal or average. - quality short distance PATO:0000375 @@ -5914,8 +5985,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A frequency which is relatively high. - high frequency quality frequent @@ -5949,8 +6025,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A frequency which is relatively low. - low frequency quality infrequent @@ -6046,8 +6127,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A hardness quality of being rigid and resistant to pressure. - quality firm impenetrable @@ -6083,8 +6169,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A hardness quality of giving little resistance to pressure. - quality PATO:0000387 @@ -6116,8 +6207,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course. - quality PATO:0000389 @@ -6301,9 +6397,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A branchiness quality inhering in a bearer by virtue of the bearer's having branches. - ramified ramiform quality @@ -6347,8 +6448,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals). - PATO:0001363 spiral quality @@ -6548,8 +6654,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches. - quality PATO:0000414 @@ -6570,8 +6681,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals). - quality PATO:0000415 @@ -6656,8 +6772,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth. - quality PATO:0000422 @@ -6677,8 +6798,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth. - quality PATO:0000423 @@ -6731,8 +6857,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly. - quality PATO:0000427 @@ -6753,8 +6884,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances. - quality PATO:0000428 @@ -6890,8 +7026,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation. - uniform quality constant @@ -6923,8 +7064,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement. - quality PATO:0000440 @@ -7205,8 +7351,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's deviation from normal or average. - quality aberrant atypia @@ -7231,8 +7382,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average. - quality average PATO:0000461 @@ -7254,6 +7410,12 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + @@ -7268,7 +7430,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality denoting the lack of an entity. - PATO:0001996 absence absent from organism @@ -7293,8 +7454,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of being clearly visible. - quality distinct PATO:0000463 @@ -7315,8 +7481,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of not being clearly visible. - quality faint PATO:0000464 @@ -7359,8 +7530,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's existence. - quality present in organism PATO:0000467 @@ -7414,8 +7590,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An amount which is relatively high. - PATO:0000420 PATO:0000650 increased number @@ -7617,9 +7798,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent. - responsive quality PATO:0000487 @@ -7641,8 +7827,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent. - unresponsive quality PATO:0000488 @@ -7775,8 +7966,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration quality of a process which is relatively high. - PATO:0000715 high time increased period @@ -7814,8 +8010,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration quality of a process which is relatively low. - PATO:0000716 decreased period decreased time @@ -7917,8 +8118,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm. - quality PATO:0000504 @@ -7937,8 +8143,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm. - quality PATO:0000505 @@ -8034,8 +8245,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus. - insensitive quality resistant @@ -8092,8 +8308,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's having sensitivity toward an external stimulus. - sensitive quality PATO:0000516 @@ -8434,9 +8655,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity. - quality photoresistant PATO:0000546 @@ -8457,8 +8683,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's exhibiting photosensitivity. - quality PATO:0000547 @@ -8723,8 +8954,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A height which is relatively low. - quality short PATO:0000569 @@ -8756,8 +8992,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A height which is relatively high. - quality tall PATO:0000570 @@ -8811,8 +9052,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A length quality which is relatively large. - long quality PATO:0000573 @@ -8844,8 +9090,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A length quality which is relatively small. - short quality shortened @@ -8954,8 +9205,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A weight which is relatively high. - heavy high weight quality @@ -8988,8 +9244,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A weight which is relatively low. - light weight low weight quality @@ -9010,8 +9271,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ). - hypertrophy quality PATO:0000584 @@ -9032,8 +9298,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ). - PATO:0000412 shrunken quality @@ -9067,8 +9338,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A size quality which is relatively high. - PATO:0001202 quality big @@ -9105,8 +9381,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A size quality which is relatively low. - hypoplasia underdeveloped quality @@ -9184,8 +9465,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A thickness which is relatively high. - high thickness stout thickened @@ -9221,8 +9507,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A thickness which is relatively low. - low thickness quality slender @@ -9279,8 +9570,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A volume which is relatively high. - high volume quality large volume @@ -9314,8 +9610,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A volume which is relatively low. - low volume quality small volume @@ -9371,8 +9672,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A width which is relatively small. - quality narrow PATO:0000599 @@ -9404,8 +9710,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A width which is relatively large. - quality broad wide @@ -9506,9 +9817,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view. - quality blocked PATO:0000608 @@ -9547,8 +9863,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view. - quality PATO:0000610 @@ -9589,8 +9910,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation. - quality PATO:0000613 @@ -9609,8 +9935,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A pattern where all the repeated elements are oriented in the same direction. - quality PATO:0000614 @@ -9712,8 +10043,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being overfilled. - quality PATO:0000619 @@ -9996,8 +10332,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled. - quality PATO:0000633 @@ -10114,10 +10455,15 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process. - degeneration quality PATO:0000639 @@ -10171,8 +10517,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity. - fused fused to quality @@ -10218,8 +10569,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells. - PATO:0000943 hyperplasia quality @@ -10243,8 +10599,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue. - PATO:0000942 hypoplasia quality @@ -10348,8 +10709,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity. - unfused quality PATO:0000651 @@ -10513,8 +10879,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color brightness which is relatively high. - light quality PATO:0000665 @@ -10774,8 +11145,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase. - quality PATO:0000688 @@ -10794,8 +11170,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent. - PATO:0000429 uninterrupted quality @@ -10816,8 +11197,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions. - PATO:0000426 interrupted quality @@ -10903,8 +11289,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase. - quality PATO:0000695 @@ -10967,8 +11358,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A texture quality inhering in a bearer by virtue of the bearer's irregular surface. - PATO:0001616 coarse quality @@ -10990,8 +11386,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities. - quality PATO:0000701 @@ -11067,8 +11468,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A threshold which is relatively high. - PATO:0000709 high threshold quality @@ -11113,8 +11519,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A threshold which is relatively low. - PATO:0000707 low threshold quality @@ -11680,9 +12091,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A balance quality inhering in a bearer by virtue of the bearer's having balance. - quality PATO:0000757 @@ -11701,8 +12117,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A balance quality inhering in a bearer by virtue of the bearer's lacking balance. - quality PATO:0000758 @@ -11759,8 +12180,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity. - hyperactive quality PATO:0000760 @@ -11792,8 +12218,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity. - hypoactive quality PATO:0000761 @@ -11940,9 +12371,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement. - quality PATO:0000769 @@ -11962,8 +12398,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement. - quality PATO:0000770 @@ -13301,9 +13742,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction. - quality PATO:0000888 @@ -13334,9 +13780,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male fertility quality inhering in a male by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. - quality male infertile PATO:0000890 @@ -13357,8 +13808,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. - quality PATO:0000891 @@ -13378,8 +13834,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. - quality female infertile PATO:0000892 @@ -13614,8 +14075,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A rate which is relatively low. - slow rate quality PATO:0000911 @@ -13648,8 +14114,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A rate which is relatively high. - fast rate high rate quality @@ -13983,9 +14454,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking organisation. - quality PATO:0000937 @@ -14005,8 +14481,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation. - quality PATO:0000938 @@ -14323,9 +14804,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. - quality PATO:0000955 @@ -14345,8 +14831,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. - quality PATO:0000956 @@ -14440,8 +14931,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy. - non-transparent quality clouding @@ -14464,8 +14960,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A optical quality inhering in a bearer by virtue of the bearer's lacking opacity. - clear hyaline quality @@ -14729,9 +15230,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion). - quality porous PATO:0000982 @@ -14752,8 +15258,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). - quality PATO:0000983 @@ -14773,9 +15284,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices. - quality PATO:0000984 @@ -14795,8 +15311,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices. - quality PATO:0000985 @@ -15613,8 +16134,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in an entity by virtue of the bearer's propensity to resist an external stimulus. - susceptibility quality PATO:0001043 @@ -15658,8 +16184,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus. - resistance quality PATO:0001046 @@ -16882,9 +17413,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus. - susceptible quality PATO:0001152 @@ -16906,8 +17442,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus. - insusceptible quality PATO:0001153 @@ -16929,8 +17470,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width. - quality PATO:0001154 @@ -17056,8 +17602,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A concentration which is higher relative to the normal or average. - high concentration quality PATO:0001162 @@ -17090,8 +17641,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A concentration which is lower relative to the normal or average. - low concentration quality PATO:0001163 @@ -17154,9 +17710,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired. - quality PATO:0001167 @@ -17175,8 +17736,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled. - quality PATO:0001168 @@ -17216,9 +17782,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way. - quality PATO:0001171 @@ -17239,8 +17810,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way. - quality PATO:0001172 @@ -17553,8 +18129,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent. - hyperresponsive increased responsivity quality @@ -17611,8 +18192,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent. - decreased responsivity hyporesponsive quality @@ -17816,8 +18402,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex. - serrate quality PATO:0001206 @@ -18067,8 +18658,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change. - variable quality PATO:0001227 @@ -18100,8 +18696,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color saturation which is of high purity. - bright quality vivid @@ -18164,8 +18765,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the back or upper surface of an organism relative to another entity. - dorsal posterior_to (human torso) superior_to (human head) @@ -18188,8 +18794,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity. - distal quality PATO:0001234 @@ -19579,8 +20190,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A temperature which is relatively high. - PATO:0000678 high temperature hot @@ -19614,8 +20230,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A temperature which is relatively low. - PATO:0000677 cold low temperature @@ -19647,8 +20268,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of temperature which is relatively low. - low variability of temperature quality PATO:0001307 @@ -19678,8 +20304,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of temperature which is relatively high. - high variability of temperature quality PATO:0001308 @@ -19754,8 +20385,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration of temperature which is lesser relative to the normal or average enduring or continuing in time. - quality PATO:0001311 @@ -19786,8 +20422,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time. - high duration of temperature quality PATO:0001312 @@ -19807,8 +20448,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature. - quality PATO:0001313 @@ -19827,8 +20473,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature. - quality PATO:0001314 @@ -19904,9 +20555,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli. - quality PATO:0001318 @@ -19927,8 +20583,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli. - quality PATO:0001319 @@ -20663,8 +21324,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere. - quality PATO:0001355 @@ -20807,9 +21473,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed. - quality PATO:0001362 @@ -21791,8 +22462,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having distinct structure. - quality PATO:0001411 @@ -21811,8 +22487,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure. - quality PATO:0001412 @@ -21891,8 +22572,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration which has regular start and/or end times. - quality PATO:0001416 @@ -21911,8 +22597,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times. - quality PATO:0001417 @@ -22674,9 +23365,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's dependence on oxygen. - quality PATO:0001455 @@ -22696,8 +23392,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's independence on oxygen. - quality PATO:0001456 @@ -22760,8 +23461,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen. - quality PATO:0001459 @@ -22781,8 +23487,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen. - quality PATO:0001460 @@ -23034,8 +23745,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A depth which is relatively low. - PATO:0001692 low depth shallow @@ -23110,8 +23826,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A position which is relatively high. - quality high position PATO:0001475 @@ -23143,8 +23864,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A positional which is relatively low. - quality low position PATO:0001476 @@ -23332,8 +24058,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together. - PATO:0001840 compact compressed @@ -23482,7 +24213,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001493 @@ -23496,7 +24232,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001494 @@ -23632,8 +24373,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development. - quality underdeveloped PATO:0001501 @@ -23808,8 +24554,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A functionality quality held by the bearer when the latter is able to perform a regular function(s). - quality PATO:0001510 @@ -23829,8 +24580,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s). - PATO:0001640 disfunctional functional failure @@ -24343,9 +25099,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid. - soluble quality PATO:0001537 @@ -24367,8 +25128,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A solubility quality inhering in a substance by virtue of the bearer's inability of a substance to dissolve in a liquid. - insoluble quality PATO:0001538 @@ -24488,8 +25254,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking. - bendy quality PATO:0001544 @@ -24510,8 +25281,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking. - stiff quality stiffness @@ -24606,8 +25382,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity toward an external stimulus which is higher than normal/average. - high sensitivity toward increased sensitivity quality @@ -24642,8 +25423,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity toward an external stimulus which is lower than normal/average. - decreased sensitivity low sensitivity toward quality @@ -24678,8 +25464,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of a process which is higher than normal or average. - high sensitivity of occurrent increased sensitivity of occurrent quality @@ -24713,8 +25504,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of a process which is lower than normal or average. - decreased sensitivity of occurrent low sensitivity of occurrent quality @@ -24748,8 +25544,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of occurrent to oxygen which is higher than normal or average. - high sensitivity of occurrent to oxygen quality PATO:0001553 @@ -24782,8 +25583,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of a process to oxygen which is lower than normal or average. - low sensitivity of occurrent to oxygen quality PATO:0001554 @@ -24959,8 +25765,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mass which is lower than normal or average. - PATO:0000579 low mass small mass @@ -24994,8 +25805,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mass which is higher than normal or average. - PATO:0000578 high mass large mass @@ -25046,9 +25862,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up. - PATO:0001513 diffuse scattered @@ -25071,8 +25892,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up. - quality PATO:0001567 @@ -25213,8 +26039,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A pressure which is relatively low. - low pressure quality PATO:0001575 @@ -25246,8 +26077,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A pressure which is relatively high. - high pressure quality PATO:0001576 @@ -25279,8 +26115,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A permeability which is relatively high. - high permeability quality PATO:0001577 @@ -25313,8 +26154,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A permeability which is relatively low. - low permeability quality PATO:0001578 @@ -25368,8 +26214,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A contractility which is relatively high. - high contractility quality PATO:0001580 @@ -25402,8 +26253,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A contractility which is relatively low. - low contractility quality PATO:0001581 @@ -25453,8 +26309,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability which is relatively low. - low variability quality PATO:0001583 @@ -25484,8 +26345,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability which is relatively high. - high variability quality PATO:0001584 @@ -25562,8 +26428,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of rate which is relatively high. - high variability of rate quality PATO:0001587 @@ -25593,8 +26464,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of rate which is relatively low. - low variability of rate quality PATO:0001588 @@ -25686,8 +26562,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A curvature which is relatively high. - quality PATO:0001592 @@ -25718,8 +26599,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A curvature which is relatively low. - quality PATO:0001593 @@ -25789,8 +26675,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A depth quality which is relatively high. - PATO:0001666 deep quality @@ -25947,8 +26838,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A life span which is relatively high. - high life span quality PATO:0001603 @@ -25979,8 +26875,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A life span which is relatively low. - low life span quality PATO:0001604 @@ -26144,8 +27045,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of color which is relatively high. - high variability of color quality PATO:0001612 @@ -26175,8 +27081,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of color which is relatively low. - low variability of color quality PATO:0001613 @@ -26196,8 +27107,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color. - quality PATO:0001614 @@ -26216,8 +27132,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour. - quality PATO:0001615 @@ -26279,8 +27200,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tonicity which is relatively high. - high tonicity quality PATO:0001618 @@ -26313,8 +27239,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tonicity which is relatively low. - low tonicity quality PATO:0001619 @@ -26367,8 +27298,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A turgor which is relatively low. - low turgor quality PATO:0001621 @@ -26401,8 +27337,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A turgor which is relatively high. - high turgor quality PATO:0001622 @@ -26457,8 +27398,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s). - PATO:0001556 PATO:0001568 PATO:0001641 @@ -26501,8 +27447,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s). - high functionality quality PATO:0001625 @@ -26544,8 +27495,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality. - quality adequate PATO:0001627 @@ -26565,8 +27521,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality. - quality inadequate PATO:0001628 @@ -26703,9 +27664,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being essential or indispensable. - quality PATO:0001635 @@ -26724,8 +27690,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable. - quality PATO:0001636 @@ -26763,8 +27734,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable. - quality PATO:0001638 @@ -26783,8 +27759,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable. - quality PATO:0001639 @@ -26966,8 +27947,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A resistance to a stimulus which is relatively high. - high resistance to increased resistance quality @@ -27002,8 +27988,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A resistance to a stimulus which is relatively low. - decreased resistance low resistance to quality @@ -27052,8 +28043,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity. - aligned quality aligned to @@ -27075,8 +28071,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity. - misaligned unaligned with quality @@ -27131,8 +28132,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A osmolarity which is relatively low. - low osmolarity quality PATO:0001656 @@ -27165,8 +28171,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A osmolarity which is relatively high. - high osmolarity quality PATO:0001657 @@ -27301,8 +28312,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A solubility which is relatively high. - high solubility quality PATO:0001663 @@ -27336,8 +28352,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A solubility which is relatively low. - low solubility quality PATO:0001664 @@ -27449,8 +28470,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A susceptibility toward an external stimulus which is higher than normal/average. - high susceptibility toward increased susceptibility quality @@ -27485,8 +28511,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A susceptibility toward an external stimulus which is lower than normal/average. - decreased susceptibility low susceptibility toward quality @@ -27521,8 +28552,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A distribution which is relatively high. - high distribution quality PATO:0001671 @@ -27554,8 +28590,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A distribution which is relatively low. - low distribution quality PATO:0001672 @@ -27629,8 +28670,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An efficiency which is relatively low. - low efficiency quality PATO:0001675 @@ -27662,8 +28708,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An efficiency which is relatively high. - high efficiency quality PATO:0001676 @@ -27683,9 +28734,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An efficiency quality inhering in a bearer by virtue of the bearer's lacking efficiency. - quality PATO:0001677 @@ -27704,8 +28760,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency. - quality PATO:0001678 @@ -27818,8 +28879,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A magnetism which is relatively high. - high magnetism quality PATO:0001683 @@ -27852,8 +28918,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A magnetism which is relatively low. - low magnetism quality PATO:0001684 @@ -27874,9 +28945,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism. - quality PATO:0001685 @@ -27896,8 +28972,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A magnetic quality inhering in a bearer by virtue of the bearer's inability to exert magnitism. - quality PATO:0001686 @@ -27948,8 +29029,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elevation which is relatively high. - high elevation quality elevated @@ -27982,8 +29068,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elevation which is relatively low. - low elevation quality PATO:0001689 @@ -28003,9 +29094,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted. - quality PATO:0001690 @@ -28026,8 +29122,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted. - quality PATO:0001691 @@ -28070,8 +29171,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A viscosity which relatively high. - high viscosity quality PATO:0001693 @@ -28104,8 +29210,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A viscosity which relatively low. - low viscosity quality PATO:0001694 @@ -28138,8 +29249,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fecundity which is relatively high. - high fecundity quality PATO:0001695 @@ -28172,8 +29288,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fecundity which is relatively low. - low fecundity quality PATO:0001696 @@ -28206,8 +29327,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A photosensitivity which is relatively low. - low photosensitivity quality PATO:0001697 @@ -28241,8 +29367,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A photosensitivity which is relatively high. - high photosensitivity quality PATO:0001698 @@ -28264,8 +29395,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sleep pattern which has regular start and/or end times. - quality PATO:0001699 @@ -28284,8 +29420,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sleep pattern which has irregular start and/or end times. - quality PATO:0001700 @@ -28304,8 +29445,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development. - quality PATO:0001701 @@ -28404,9 +29550,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's disposition to lack activity. - quality PATO:0001706 @@ -28426,8 +29577,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity. - quality PATO:0001707 @@ -28538,8 +29694,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A perimeter which is relatively high. - quality PATO:0001712 @@ -28570,8 +29731,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A perimeter which is relatively low. - quality PATO:0001713 @@ -28602,8 +29768,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A diameter which is relatively large. - quality PATO:0001714 @@ -28634,8 +29805,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A diameter which is relatively small. - quality PATO:0001715 @@ -28654,8 +29830,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking. - quality resilient strong @@ -28799,8 +29980,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female receptivity which is relatively high. - high female receptivity quality PATO:0001723 @@ -28833,8 +30019,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female receptivity which is relatively low. - low female receptivity quality PATO:0001724 @@ -28867,8 +30058,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male receptivity which is relatively high. - high male receptivity quality PATO:0001725 @@ -28901,8 +30097,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male receptivity which is relatively low. - low male receptivity quality PATO:0001726 @@ -29240,8 +30441,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A radioactivity which is relatively low. - high radioactivity quality PATO:0001742 @@ -29273,8 +30479,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A radioactivity which is relatively high. - low radioactivity quality PATO:0001743 @@ -29395,8 +30606,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth. - hypoplastic growth pedomorphic growth quality @@ -29455,8 +30671,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth. - hyperplastic growth quality PATO:0001752 @@ -29618,7 +30839,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001760 @@ -29632,7 +30858,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001761 @@ -29646,7 +30877,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001762 @@ -29660,7 +30896,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001763 @@ -29686,8 +30927,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An age which is high relative to the normal or average. - high age quality PATO:0001764 @@ -29719,8 +30965,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An age which is low relative to the normal or average. - low age quality PATO:0001765 @@ -29943,8 +31194,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A flexibility which is relatively high. - high flexibility quality PATO:0001776 @@ -29977,8 +31233,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A flexibility which is relatively low. - low flexibility quality PATO:0001777 @@ -30011,8 +31272,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A strength which is relatively high. - high strength quality PATO:0001778 @@ -30044,8 +31310,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A strength which is relatively low. - weak quality PATO:0001779 @@ -30117,8 +31388,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An intensity which is relatively high. - high intensity quality PATO:0001782 @@ -30150,8 +31426,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An intensity which is relatively low. - low intensity quality PATO:0001783 @@ -30274,8 +31555,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A density which is higher relative to the normal or average. - high density quality PATO:0001788 @@ -30328,8 +31614,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A density which is lower relative to the normal or average. - low density quality PATO:0001790 @@ -30443,8 +31734,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coiling which is relatively high. - high coiling quality PATO:0001795 @@ -30477,8 +31773,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coiling which is relatively low. - low coiling quality PATO:0001796 @@ -30717,8 +32018,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity to irradiation which is relatively low. - low sensitivity to irradiation quality PATO:0001807 @@ -30751,8 +32057,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity to irradiation which is relatively high. - high sensitivity to irradiation quality PATO:0001808 @@ -30916,8 +32227,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fatigability which is relatively high. - high fatigability quality PATO:0001816 @@ -30939,8 +32255,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fatigability which is relatively low. - low fatigability quality PATO:0001817 @@ -30961,8 +32282,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time. - quality PATO:0001818 @@ -31014,8 +32340,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having no opening. - unperforated quality PATO:0001821 @@ -31057,9 +32388,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid. - quality PATO:0001823 @@ -31079,8 +32415,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid. - quality PATO:0001824 @@ -31112,8 +32453,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wetness quality that is relatively high. - quality PATO:0001825 @@ -31144,8 +32490,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wetness quality that is relatively low. - low wetness quality PATO:0001826 @@ -31234,8 +32585,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female fertility which is relatively low. - low female fertility quality PATO:0001830 @@ -31268,8 +32624,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female fertility which is relatively high. - high female fertility quality PATO:0001831 @@ -31302,8 +32663,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male fertility which is relatively high. - high male fertility quality PATO:0001832 @@ -31336,8 +32702,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male fertility which is relatively low. - low male fertility quality PATO:0001833 @@ -31370,8 +32741,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fertility which is relatively low. - low fertility quality PATO:0001834 @@ -31404,8 +32780,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fertility which is relatively high. - high fertility quality PATO:0001835 @@ -31468,8 +32849,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A flow that is relatively low. - low flow quality PATO:0001838 @@ -31501,8 +32887,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fluid flow that is relatively high. - high flow quality PATO:0001839 @@ -31586,8 +32977,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An acidity which is relatively low. - low acidity quality PATO:0001843 @@ -31619,8 +33015,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An acidity which is relatively high. - high acidity quality PATO:0001844 @@ -31898,8 +33299,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality in a bearer by virtue of the bearer's curving inward. - quality PATO:0001857 @@ -31950,8 +33356,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coordination which is relatively high. - high coordination quality PATO:0001859 @@ -31984,8 +33395,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coordination which is relatively low. - low coordination quality PATO:0001860 @@ -32006,9 +33422,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve. - fascicled quality PATO:0001861 @@ -32050,8 +33471,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration. - quality PATO:0001863 @@ -32508,9 +33934,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water. - quality PATO:0001884 @@ -32530,8 +33961,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water. - quality PATO:0001885 @@ -32551,8 +33987,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water. - quality PATO:0001886 @@ -32572,8 +34013,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water. - quality PATO:0001887 @@ -32700,8 +34146,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An odor quality of having decreased odor. - quality PATO:0001892 @@ -32732,8 +34183,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An odor quality of having increased odor. - quality PATO:0001893 @@ -32784,8 +34240,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. - quality PATO:0001896 @@ -32804,8 +34265,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structure quality inhering in a bearer by virtue of the bearer's having a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. - quality PATO:0001897 @@ -32837,8 +34303,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A circumference which is relatively high. - quality PATO:0001898 @@ -32869,8 +34340,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A circumference which is relatively low. - quality PATO:0001899 @@ -32889,8 +34365,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north. - quality PATO:0001900 @@ -32909,8 +34390,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south. - quality PATO:0001901 @@ -33408,8 +34894,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fluorescence which is higher than normal. - high fluorescence quality PATO:0001926 @@ -33441,8 +34932,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fluorescence which is lower than normal. - low fluorescence quality PATO:0001927 @@ -33508,8 +35004,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape. - quality PATO:0001930 @@ -33528,8 +35029,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape. - quality PATO:0001931 @@ -34048,8 +35554,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of size which is relatively low. - low variability of size quality PATO:0001957 @@ -34079,8 +35590,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of size which is relatively high. - high variability of size quality PATO:0001958 @@ -34100,8 +35616,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated. - quality PATO:0001959 @@ -34407,8 +35928,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex. - quality PATO:0001975 @@ -34837,8 +36363,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An amount which is relatively low. - PATO:0000419 PATO:0000468 decreased number @@ -34944,8 +36475,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. - PATO:0001569 decreased number of has decreased number of @@ -34981,8 +36517,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. - PATO:0001560 has extra parts of has increased number of @@ -35087,6 +36628,12 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + @@ -35094,7 +36641,6 @@ Association is weaker than correlation or proportionality. These relations may b A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave. - Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png quality PATO:0002007 @@ -35121,8 +36667,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave. - Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png quality PATO:0002008 @@ -35281,7 +36832,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + high magnitude quality PATO:0002017 @@ -35294,7 +36850,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + low magnitude quality PATO:0002018 @@ -35444,8 +37005,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time. - george gkoutos 2008-12-18T12:49:19Z quality @@ -35503,8 +37069,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An osmolality which is relatively low. - george 2009-01-27T10:55:33Z low osmolality @@ -35539,8 +37110,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An osmolality which is relatively high. - george 2009-01-27T10:56:19Z high osmolality @@ -35740,8 +37316,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer whose structure which does not deteriorate. - george 2009-02-03T11:14:54Z not degenerate @@ -35763,8 +37344,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces. - quality PATO:0002039 @@ -35783,8 +37369,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface. - Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx quality PATO:0002040 @@ -35836,8 +37427,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An anterior-posterior diameter quality which is relatively small. - low anterior-posterior diameter quality PATO:0002042 @@ -35869,8 +37465,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An anterior-posterior diameter quality which is relatively large. - high anterior-posterior diameter quality PATO:0002043 @@ -36062,8 +37663,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An occurrence which is relatively high. - George Gkoutos 2009-03-26T11:10:11Z increased incidence @@ -36096,8 +37702,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An occurrence which is relatively low. - George Gkoutos 2009-03-26T11:12:35Z decreased incidence @@ -36174,8 +37785,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fragility which is relatively high. - George Gkoutos 2009-03-26T04:01:37Z quality @@ -36209,8 +37825,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fragility which is relatively low. - George Gkoutos 2009-03-26T04:02:14Z quality @@ -36244,8 +37865,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An area which is relatively high. - George Gkoutos 2009-03-30T04:11:43Z quality @@ -36278,8 +37904,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An area which is relatively low. - George Gkoutos 2009-03-30T04:12:11Z quality @@ -36478,8 +38109,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration. - George Gkoutos 2009-07-01T02:31:53Z quality @@ -36501,8 +38137,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration. - George Gkoutos 2009-07-01T02:33:41Z quality @@ -36560,8 +38201,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An affinity which is relatively high. - George Gkoutos 2009-09-18T01:29:42Z quality @@ -36596,8 +38242,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An affinity which is relatively low. - George Gkoutos 2009-09-18T01:30:11Z quality @@ -36656,8 +38307,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An avidity which is relatively high. - George Gkoutos 2009-09-18T01:45:56Z quality @@ -36692,8 +38348,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An avidity which is relatively low. - George Gkoutos 2009-09-18T01:45:59Z quality @@ -37202,8 +38863,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type. - george 2009-10-05T12:58:54Z quality @@ -37225,8 +38891,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A cellular quality inhering in a bearer by virtue of having not yet acquired a special structure of function. - george 2009-10-05T12:59:21Z quality @@ -37495,8 +39166,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes. - george 2009-10-05T03:37:05Z PATO:0000649 @@ -38099,9 +39775,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer being suitable for use as food. - george 2009-10-26T01:21:34Z quality @@ -38124,8 +39805,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food. - george 2009-10-26T01:22:27Z quality @@ -38209,8 +39895,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A radiopacity that is relatively high. - george 2009-10-30T03:30:39Z quality @@ -38244,8 +39935,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A radiopacity that is relatively low. - george 2009-10-30T03:31:31Z quality @@ -38302,8 +39998,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A virulence that is relatively low. - george 2009-10-30T05:05:02Z attenuated @@ -38337,8 +40038,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A virulence that is relatively high. - george 2009-10-30T05:13:10Z quality @@ -39249,9 +40955,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. - George Gkoutos 2010-03-10T03:25:59Z quality @@ -39272,8 +40983,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic. - George Gkoutos 2010-03-10T03:26:41Z quality @@ -39339,9 +41055,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge. - George Gkoutos 2010-03-10T03:30:06Z quality @@ -39362,8 +41083,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge. - George Gkoutos 2010-03-10T03:30:39Z quality @@ -39895,9 +41621,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group. - george 2010-07-09T01:50:14Z quality @@ -39930,8 +41661,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups. - george 2010-07-09T01:51:52Z hyperphosphorylated @@ -39965,8 +41701,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully. - george 2010-07-09T01:54:22Z hypophosporylated @@ -40479,8 +42220,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A force which relative high. - george 2010-08-04T11:12:20Z increased force amplitude @@ -40514,8 +42260,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A force which is relative low. - george 2010-08-04T11:13:13Z decreased force amplitude @@ -40565,9 +42316,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A degree of pigmentation quality inhering in a bearer by virtue of the bearer's having substances produced by living organisms that have a color resulting from selective color absorption. - george 2010-08-09T04:16:49Z quality @@ -40589,8 +42345,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A degree of pigmentation quality inhering in a bearer by virtue of the bearer's lacking substances produced by living organisms that have a color resulting from selective color absorption. - george 2010-08-09T04:17:04Z depigmented @@ -40625,8 +42386,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A degree of pigmentation quality that is relatively high. - george 2010-08-09T04:17:19Z hyperpigmented @@ -40661,8 +42427,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A degree of pigmentation quality that is relative low. - george 2010-08-09T04:17:37Z hypopigmented @@ -40931,8 +42702,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group. - george 2010-09-16T09:04:21Z quality @@ -41075,8 +42851,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner. - george 2010-10-26T02:00:20Z accumulated @@ -41099,8 +42880,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An accumulation which is relative low. - george 2010-10-26T02:04:45Z quality @@ -41344,8 +43130,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mobility which is relative high. - george 2011-03-09T09:16:03Z quality @@ -41378,8 +43169,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mobility which is relative low. - george 2011-03-09T09:16:47Z quality @@ -41422,8 +43218,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity. - george 2011-03-10T09:07:57Z quality @@ -41444,8 +43245,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity. - george 2011-03-10T09:08:37Z quality @@ -41478,8 +43284,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elasticity which is relatively high. - George Gkoutos 2011-03-30T11:50:21Z quality @@ -41512,8 +43323,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elasticity which is relatively low. - George Gkoutos 2011-03-30T11:50:39Z quality @@ -41709,8 +43525,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A cellular motility which is lower relative to the normal or average. - quality PATO:0002297 @@ -41741,8 +43562,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A cellular motility which is higher relative to the normal or average. - quality PATO:0002298 @@ -41796,8 +43622,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality that has a value that is increased compared to normal or average. - George Gkoutos 2011-06-16T06:39:43Z quality @@ -41828,8 +43659,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality that has a value that is decreased compared to normal or average. - George Gkoutos 2011-06-16T06:40:15Z quality @@ -41861,8 +43697,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a process that has a value that is decreased compared to normal or average. - George Gkoutos 2011-06-16T06:50:59Z quality @@ -41894,8 +43735,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of an object that has a value that is decreased compared to normal or average. - George Gkoutos 2011-06-16T06:51:54Z quality @@ -41927,8 +43773,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a process that has a value that is increased compared to normal or average. - George Gkoutos 2011-06-16T06:53:08Z quality @@ -41960,8 +43811,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of an object that has a value that is increased compared to normal or average. - George Gkoutos 2011-06-16T06:54:01Z quality @@ -42318,7 +44174,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + George Gkoutos 2011-10-12T12:50:59Z quality @@ -42332,7 +44193,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + George Gkoutos 2011-10-12T12:51:19Z quality @@ -42458,8 +44324,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An angle which is relatively high. - George Gkoutos 2011-11-23T12:06:38Z quality @@ -42493,8 +44364,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An angle which is relatively low. - George Gkoutos 2011-11-23T12:06:54Z quality @@ -42558,8 +44434,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact. - gkoutos 2012-01-31T12:28:16Z quality @@ -42581,8 +44462,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact. - gkoutos 2012-01-31T12:28:57Z quality @@ -42616,8 +44502,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A adhesivity which is relatively high. - gkoutos 2012-01-31T12:32:43Z quality @@ -42650,8 +44541,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A adhesivity which is relatively low. - gkoutos 2012-01-31T12:42:22Z quality @@ -43070,8 +44966,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of an physical object that is currently realizing one of its functions. - gkoutos 2012-01-31T04:52:04Z quality @@ -43092,8 +44993,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a physical object that is currently realizing none of its functions. - gkoutos 2012-01-31T04:52:14Z quality @@ -43234,8 +45140,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tendency which is relatively high. - gkoutos 2012-03-16T06:31:57Z quality @@ -43270,8 +45181,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tendency which is relatively low. - gkoutos 2012-03-16T06:32:57Z quality @@ -43315,8 +45231,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width. - gkoutos 2012-04-18T06:31:29Z quality @@ -43568,8 +45489,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structure quality inhering in a bearer by virtue of the bearer's being filled with air. - gkoutos 2012-07-05T02:55:10Z air-filled @@ -43591,8 +45517,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structure quality inhering in a bearer by virtue of the bearer's being not filed with air. - gkoutos 2012-07-05T02:56:07Z quality @@ -43710,8 +45641,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A waxiness which is relatively high. - gkoutos 2012-07-05T03:18:03Z quality @@ -43744,8 +45680,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A waxiness which is relatively low. - gkoutos 2012-07-05T03:18:14Z quality @@ -43966,8 +45907,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus. - gkoutos 2012-11-15T05:32:07Z quality @@ -44001,8 +45947,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus. - gkoutos 2012-11-15T05:33:05Z quality @@ -45016,8 +46967,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures. - gkoutos 2013-01-29T10:59:42Z quality @@ -45038,8 +46994,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures. - gkoutos 2013-01-29T11:00:20Z quality @@ -45254,8 +47215,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed. - gkoutos 2013-04-08T08:43:31Z quality @@ -45657,8 +47623,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position. - gkoutos 2013-09-15T12:03:45Z quality @@ -45691,8 +47662,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position. - gkoutos 2013-09-15T12:05:06Z quality @@ -46103,8 +48079,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally. - gkoutos 2013-10-10T05:12:15Z anterodorsally directed @@ -46170,8 +48151,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distally. - gkoutos 2013-10-10T05:14:37Z distally directed @@ -46193,8 +48179,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally. - gkoutos 2013-10-10T05:15:24Z dorsally directed @@ -46392,8 +48383,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally. - gkoutos 2013-10-10T05:19:36Z posterodorsally directed @@ -46865,8 +48861,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally. - segerdel 2014-03-11T11:28:39Z antero-distal orientation @@ -46887,8 +48888,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally. - segerdel 2014-03-11T11:29:22Z postero-distal orientation @@ -47530,8 +49536,13 @@ height'). + + + + + + A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts. - wasila.dahdul 2014-09-25T15:11:47Z quality @@ -47552,8 +49563,13 @@ height'). + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities. - wasila.dahdul 2014-09-25T15:12:35Z quality @@ -48012,8 +50028,13 @@ height'). + + + + + + A decrease in the ability of a process to produce its output. - cjm quality PATO:0015003 @@ -48044,8 +50065,13 @@ height'). + + + + + + A increase in the ability of a process to produce its output. - cjm quality PATO:0015004 @@ -48187,8 +50213,13 @@ height'). + + + + + + An increase in humidity. - quality humid PATO:0015010 @@ -48218,8 +50249,13 @@ height'). + + + + + + An decrease in humidity. - quality PATO:0015011 @@ -48286,8 +50322,13 @@ height'). + + + + + + An increase in illumination. - quality illuminated PATO:0015014 @@ -48317,8 +50358,13 @@ height'). + + + + + + An decrease in illumination. - quality PATO:0015015 @@ -48468,8 +50514,13 @@ height'). + + + + + + An increase in combustibility. - combustible quality PATO:0015022 @@ -48493,8 +50544,13 @@ height'). + + + + + + An decrease in combustibility. - quality noncombustible PATO:0015023 @@ -48547,8 +50603,13 @@ height'). + + + + + + An decrease in porosity. - quality PATO:0015025 @@ -48627,8 +50688,13 @@ height'). + + + + + + A decrease in stability. - quality PATO:0015028 @@ -48770,9 +50836,14 @@ height'). + + + + + + A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration. - pbuttigieg 2015-09-01T16:18:57Z undrinkable @@ -48793,8 +50864,13 @@ height'). + + + + + + A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration. - pbuttigieg 2015-09-01T16:19:02Z drinkable @@ -51946,8 +54022,13 @@ height'). + + + + + + North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west. - Luke Slater 2017-12-22T14:16:43Z quality @@ -51968,8 +54049,13 @@ height'). + + + + + + East is one of the four cardinal directions or points of the compass. It is the opposite direction from west. - Luke Slater 2017-12-22T14:16:43Z quality @@ -51990,8 +54076,13 @@ height'). + + + + + + South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west. - Luke Slater 2017-12-22T14:16:43Z quality @@ -52012,8 +54103,13 @@ height'). + + + + + + West is one of the four cardinal directions or points of the compass. It is the opposite direction from east. - Luke Slater 2017-12-22T14:16:43Z quality diff --git a/pato-full.json b/pato-full.json index 97a4a296..1f41f192 100644 --- a/pato-full.json +++ b/pato-full.json @@ -32,9 +32,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000487" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -76,29 +73,6 @@ }, "type" : "CLASS", "lbl" : "regulation of cell communication" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000487", - "meta" : { - "definition" : { - "val" : "A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "responsive", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000488" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "responsive to" }, { "id" : "http://purl.obolibrary.org/obo/GO_0044424", "meta" : { @@ -123,6 +97,26 @@ }, "type" : "CLASS", "lbl" : "obsolete intracellular part" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000487", + "meta" : { + "definition" : { + "val" : "A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "responsive", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "responsive to" }, { "id" : "http://purl.obolibrary.org/obo/GO_0010647", "meta" : { @@ -554,9 +548,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000498" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -649,9 +640,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000499" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000715" @@ -1546,9 +1534,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001857" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -1973,9 +1958,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001716" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -2320,9 +2302,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001777" } ] }, "type" : "CLASS", @@ -2384,9 +2363,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001776" } ] }, "type" : "CLASS", @@ -2567,9 +2543,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001779" } ] }, "type" : "CLASS", @@ -2603,9 +2576,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001778" } ] }, "type" : "CLASS", @@ -2652,9 +2622,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000330" } ] }, "type" : "CLASS", @@ -2831,9 +2798,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001790" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3017,9 +2981,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001308" } ] }, "type" : "CLASS", @@ -3066,9 +3027,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001307" } ] }, "type" : "CLASS", @@ -3108,9 +3066,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001306" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000678" @@ -3138,9 +3093,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000677" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001305" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -3254,9 +3206,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001782" } ] }, "type" : "CLASS", @@ -3385,9 +3334,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001783" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3418,9 +3364,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001313" } ] }, "type" : "CLASS", @@ -3586,9 +3529,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001795" } ] }, "type" : "CLASS", @@ -3609,9 +3549,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001311" } ] }, "type" : "CLASS", @@ -3642,9 +3579,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001314" } ] }, "type" : "CLASS", @@ -3665,9 +3599,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000462" } ] }, "type" : "CLASS", @@ -3681,9 +3612,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001319" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3738,9 +3666,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001318" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3823,9 +3748,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001788" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3880,9 +3802,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, "type" : "CLASS", @@ -3907,9 +3826,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "See documentation here: http://code.google.com/p/phenotype-ontologies/wiki/ModelingOfAbsence" @@ -3969,9 +3885,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001796" } ] }, "type" : "CLASS", @@ -3992,9 +3905,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000460" } ] }, "type" : "CLASS", @@ -4010,9 +3920,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001312" } ] }, "type" : "CLASS", @@ -4048,9 +3955,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000463" } ] }, "type" : "CLASS", @@ -4071,9 +3975,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000464" } ] }, "type" : "CLASS", @@ -4393,9 +4294,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001997" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000650" }, { @@ -4791,9 +4689,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000414" } ] }, "type" : "CLASS", @@ -4981,9 +4876,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001363" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000415" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -5020,9 +4912,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000892" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5317,9 +5206,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001752" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5417,9 +5303,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001742" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5535,9 +5418,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001743" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5583,9 +5463,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000404" } ] }, "type" : "CLASS", @@ -5657,9 +5534,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000402" } ] }, "type" : "CLASS", @@ -5729,9 +5603,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000890" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5772,9 +5643,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000891" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5808,9 +5676,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000888" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5893,9 +5758,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000423" } ] }, "type" : "CLASS", @@ -5944,9 +5806,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001749" } ] }, "type" : "CLASS", @@ -5973,9 +5832,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000422" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6065,9 +5921,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000427" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6103,9 +5956,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000428" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6222,9 +6072,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001764" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6272,9 +6119,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001760" } ] }, "type" : "CLASS", @@ -6308,9 +6152,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001765" } ] }, "type" : "CLASS", @@ -6423,9 +6264,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001227" } ] }, "type" : "CLASS", @@ -6450,9 +6288,6 @@ "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001762" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6466,9 +6301,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001761" } ] }, "type" : "CLASS", @@ -6493,9 +6325,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001763" } ] }, "type" : "CLASS", @@ -6652,9 +6481,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001706" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6731,9 +6557,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001707" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6784,9 +6607,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001699" } ] }, "type" : "CLASS", @@ -6900,9 +6720,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001501" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -7033,9 +6850,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001362" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -7174,9 +6988,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001715" } ] }, "type" : "CLASS", @@ -7216,9 +7027,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001714" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -7234,9 +7042,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001713" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -7267,9 +7072,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001712" } ] }, "type" : "CLASS", @@ -7486,6 +7288,19 @@ }, "type" : "CLASS", "lbl" : "obsolete fearful" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000877", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute respiratory rate value" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001725", "meta" : { @@ -7500,28 +7315,12 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001726" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", "lbl" : "increased male receptivity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000877", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete absolute respiratory rate value" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001726", "meta" : { @@ -7538,9 +7337,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001725" } ] }, "type" : "CLASS", @@ -7572,9 +7368,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001724" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -7608,9 +7401,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001723" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -8880,9 +8670,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015022" } ] }, "type" : "CLASS", @@ -8933,9 +8720,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015023" } ] }, "type" : "CLASS", @@ -8966,9 +8750,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015027" } ] }, "type" : "CLASS", @@ -8982,9 +8763,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015024" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -9299,9 +9077,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015011" } ] }, "type" : "CLASS", @@ -9317,9 +9092,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015010" } ] }, "type" : "CLASS", @@ -9370,9 +9142,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015015" } ] }, "type" : "CLASS", @@ -9388,9 +9157,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015014" } ] }, "type" : "CLASS", @@ -9454,9 +9220,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002196" } ] }, "type" : "CLASS", @@ -9470,9 +9233,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002195" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" }, { @@ -9610,9 +9370,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002192" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-10T03:25:59Z" @@ -9637,9 +9394,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002191" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -9755,9 +9509,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002147" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-30T05:13:10Z" @@ -9870,9 +9621,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002139" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-26T01:22:27Z" @@ -9981,9 +9729,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002148" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" }, { @@ -10028,9 +9773,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002145" } ] }, "type" : "CLASS", @@ -10044,9 +9786,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002144" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-30T03:31:31Z" }, { @@ -10468,9 +10207,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015004" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "cjm" @@ -10489,9 +10225,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015003" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "cjm" @@ -11625,9 +11358,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002099" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" }, { @@ -12068,9 +11798,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001821" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000649" @@ -12657,9 +12384,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002140" } ] }, "type" : "CLASS", @@ -13173,9 +12897,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001700" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13241,9 +12962,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001698" } ] }, "type" : "CLASS", @@ -13290,9 +13008,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001697" } ] }, "type" : "CLASS", @@ -13376,9 +13091,6 @@ }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "This refers to the disposition of the bearer." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001690" } ] }, "type" : "CLASS", @@ -13465,9 +13177,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001691" } ] }, "type" : "CLASS", @@ -13501,9 +13210,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001696" } ] }, "type" : "CLASS", @@ -13576,9 +13282,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001695" } ] }, "type" : "CLASS", @@ -13597,9 +13300,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001694" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13638,9 +13338,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000370" } ] }, "type" : "CLASS", @@ -13707,9 +13404,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001693" } ] }, "type" : "CLASS", @@ -13766,9 +13460,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000438" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13858,9 +13549,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000328" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13878,9 +13566,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000365" } ] }, "type" : "CLASS", @@ -13949,9 +13634,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000375" } ] }, "type" : "CLASS", @@ -14085,9 +13767,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000374" } ] }, "type" : "CLASS", @@ -14101,9 +13780,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001863" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14259,9 +13935,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000380" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14286,9 +13959,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000381" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14362,9 +14032,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001234" } ] }, "type" : "CLASS", @@ -14411,9 +14078,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001233" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14431,9 +14095,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000386" } ] }, "type" : "CLASS", @@ -14475,9 +14136,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000387" } ] }, "type" : "CLASS", @@ -15078,9 +14736,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001657" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15148,9 +14803,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001654" } ] }, "type" : "CLASS", @@ -15255,9 +14907,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001653" } ] }, "type" : "CLASS", @@ -15276,9 +14925,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000665" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15389,9 +15035,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002527" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -15418,9 +15061,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001656" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15447,9 +15087,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001229" } ] }, "type" : "CLASS", @@ -15508,9 +15145,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001650" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15580,9 +15214,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001651" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15813,9 +15444,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001663" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15864,9 +15492,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000331" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000332" @@ -16109,9 +15734,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001670" } ] }, "type" : "CLASS", @@ -16127,9 +15749,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000440" } ] }, "type" : "CLASS", @@ -16163,9 +15782,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001664" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16263,9 +15879,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000336" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16283,9 +15896,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001678" } ] }, "type" : "CLASS", @@ -16335,9 +15945,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000344" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16374,9 +15981,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001677" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16392,9 +15996,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000345" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16415,9 +16016,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001676" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16495,9 +16093,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001675" } ] }, "type" : "CLASS", @@ -16618,9 +16213,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-03-11T11:28:39Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002491" } ] }, "type" : "CLASS", @@ -16640,9 +16232,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-03-11T11:29:22Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002504" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -16673,9 +16262,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001669" } ] }, "type" : "CLASS", @@ -16804,9 +16390,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001672" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16853,9 +16436,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001671" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16926,9 +16506,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001689" } ] }, "type" : "CLASS", @@ -17007,9 +16584,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001688" } ] }, "type" : "CLASS", @@ -17087,9 +16661,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001685" } ] }, "type" : "CLASS", @@ -17263,9 +16834,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001975" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17420,9 +16988,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001683" } ] }, "type" : "CLASS", @@ -17500,9 +17065,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001686" } ] }, "type" : "CLASS", @@ -17611,9 +17173,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001684" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17634,9 +17193,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001618" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17683,9 +17239,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001619" } ] }, "type" : "CLASS", @@ -17783,9 +17336,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001613" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17858,9 +17408,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001614" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17979,9 +17526,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001612" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17997,9 +17541,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000770" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18015,9 +17556,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001615" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18173,9 +17711,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000760" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18196,9 +17731,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000761" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18221,9 +17753,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001627" } ] }, "type" : "CLASS", @@ -18266,9 +17795,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001621" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18380,9 +17906,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001622" } ] }, "type" : "CLASS", @@ -18437,9 +17960,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001628" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18497,9 +18017,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001625" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -18534,9 +18051,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001624" } ] }, "type" : "CLASS", @@ -18563,9 +18077,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000769" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18637,9 +18148,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000308" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18657,9 +18165,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000309" } ] }, "type" : "CLASS", @@ -18673,9 +18178,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001638" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18748,9 +18250,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000299" } ] }, "type" : "CLASS", @@ -18829,9 +18328,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000304" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18949,9 +18445,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000303" } ] }, "type" : "CLASS", @@ -18978,9 +18471,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001639" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18996,9 +18486,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001636" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -19029,9 +18516,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001635" } ] }, "type" : "CLASS", @@ -20307,9 +19791,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001603" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -20357,24 +19838,6 @@ }, "type" : "CLASS", "lbl" : "obsolete vocalization value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000758", - "meta" : { - "definition" : { - "val" : "A balance quality inhering in a bearer by virtue of the bearer's lacking balance.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000757" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "unbalanced" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001602", "meta" : { @@ -20395,6 +19858,21 @@ }, "type" : "CLASS", "lbl" : "distended" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000758", + "meta" : { + "definition" : { + "val" : "A balance quality inhering in a bearer by virtue of the bearer's lacking balance.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "unbalanced" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000757", "meta" : { @@ -20404,9 +19882,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000758" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -20426,9 +19901,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001604" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -20697,9 +20169,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000709" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000708" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -20736,9 +20205,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000706" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000707" }, { @@ -20759,9 +20225,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000700" } ] }, "type" : "CLASS", @@ -20785,9 +20248,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000701" } ] }, "type" : "CLASS", @@ -21184,9 +20644,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002068" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-07-01T02:33:41Z" @@ -21226,9 +20683,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002069" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-07-01T02:31:53Z" @@ -21371,9 +20825,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002075" } ] }, "type" : "CLASS", @@ -21395,9 +20846,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002074" } ] }, "type" : "CLASS", @@ -21452,9 +20900,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002071" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-09-18T01:30:11Z" @@ -21521,9 +20966,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002072" } ] }, "type" : "CLASS", @@ -21784,9 +21226,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002100" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -22054,9 +21493,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002028" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-01-27T10:56:19Z" @@ -22101,9 +21537,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002029" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-01-27T10:55:33Z" @@ -22189,9 +21622,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001171" } ] }, "type" : "CLASS", @@ -22267,9 +21697,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001818" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2008-12-18T12:49:19Z" }, { @@ -22384,9 +21811,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001172" } ] }, "type" : "CLASS", @@ -22405,9 +21829,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000639" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-02-03T11:14:54Z" }, { @@ -22429,9 +21850,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002040" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -22847,9 +22265,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002042" } ] }, "type" : "CLASS", @@ -22922,9 +22337,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001192" } ] }, "type" : "CLASS", @@ -22960,9 +22372,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002043" } ] }, "type" : "CLASS", @@ -23115,9 +22524,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001194" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -23136,9 +22542,6 @@ "val" : "Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx" } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002039" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -23236,9 +22639,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002056" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-26T04:01:37Z" @@ -23262,9 +22662,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002051" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-26T11:12:35Z" }, { @@ -23312,9 +22709,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002057" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-30T04:12:11Z" @@ -23357,9 +22751,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-26T04:02:14Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002055" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -23381,9 +22772,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002058" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-30T04:11:43Z" @@ -23429,9 +22817,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002052" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" }, { @@ -24024,9 +23409,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-09-15T12:05:06Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002471" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -24153,9 +23535,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002472" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-09-15T12:03:45Z" }, { @@ -24322,9 +23701,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000300" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -24434,9 +23810,6 @@ }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "Use this term or an is_a child of this term when the entire shape of the object is known." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002008" } ] }, "type" : "CLASS", @@ -24455,9 +23828,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002007" } ] }, "type" : "CLASS", @@ -24600,9 +23970,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001153" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -24678,9 +24045,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001152" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -24881,9 +24245,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002002" - }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type." }, { @@ -24926,9 +24287,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002364" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -24965,9 +24323,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002001" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001560" }, { @@ -25086,9 +24441,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002017" } ] }, "type" : "CLASS", @@ -25148,9 +24500,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002018" } ] }, "type" : "CLASS", @@ -25171,9 +24520,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-10T05:14:37Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002495" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -25198,9 +24544,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001162" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -25236,9 +24579,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002494" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -25343,9 +24683,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001163" } ] }, "type" : "CLASS", @@ -25376,24 +24713,6 @@ }, "type" : "CLASS", "lbl" : "anteroventral orientation" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001167", - "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001168" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "damaged" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002498", "meta" : { @@ -25420,6 +24739,21 @@ }, "type" : "CLASS", "lbl" : "medial orientation" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001167", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "damaged" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002014", "meta" : { @@ -25487,9 +24821,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001167" } ] }, "type" : "CLASS", @@ -25632,6 +24963,19 @@ "id" : "http://www.geneontology.org/formats/oboInOwl#SubsetProperty", "type" : "PROPERTY", "lbl" : "subset_property" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001160", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete unconcentrated" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002491", "meta" : { @@ -25646,9 +24990,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002526" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -25661,19 +25002,6 @@ }, "type" : "CLASS", "lbl" : "anterodorsal orientation" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001160", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete unconcentrated" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000246", "meta" : { @@ -25724,9 +25052,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001577" } ] }, "type" : "CLASS", @@ -25817,9 +25142,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001575" } ] }, "type" : "CLASS", @@ -25887,9 +25209,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001578" } ] }, "type" : "CLASS", @@ -26199,9 +25518,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001576" } ] }, "type" : "CLASS", @@ -26461,9 +25777,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001588" } ] }, "type" : "CLASS", @@ -26549,9 +25862,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001587" } ] }, "type" : "CLASS", @@ -26671,9 +25981,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001580" } ] }, "type" : "CLASS", @@ -26727,9 +26034,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001581" } ] }, "type" : "CLASS", @@ -26890,9 +26194,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001584" } ] }, "type" : "CLASS", @@ -26958,9 +26259,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001583" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -27425,9 +26723,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001593" } ] }, "type" : "CLASS", @@ -27443,9 +26738,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001592" } ] }, "type" : "CLASS", @@ -27548,9 +26840,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001472" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001666" }, { @@ -27686,9 +26975,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002442" } ] }, "type" : "CLASS", @@ -27801,9 +27087,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002441" } ] }, "type" : "CLASS", @@ -28362,9 +27645,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-08T08:43:31Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001485" } ] }, "type" : "CLASS", @@ -28564,9 +27844,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000695" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -28715,9 +27992,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001537" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -28751,9 +28025,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000690" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000429" }, { @@ -28840,9 +28111,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001538" } ] }, "type" : "CLASS", @@ -28993,9 +28261,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001544" } ] }, "type" : "CLASS", @@ -29193,9 +28458,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001545" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -29261,9 +28523,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001550" } ] }, "type" : "CLASS", @@ -29410,9 +28669,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000689" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000426" }, { @@ -29578,9 +28834,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000688" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -29922,9 +29175,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001553" } ] }, "type" : "CLASS", @@ -30184,9 +29434,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001551" } ] }, "type" : "CLASS", @@ -30241,9 +29488,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001554" } ] }, "type" : "CLASS", @@ -30281,9 +29525,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001549" } ] }, "type" : "CLASS", @@ -30321,9 +29562,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001552" } ] }, "type" : "CLASS", @@ -30386,9 +29624,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001566" } ] }, "type" : "CLASS", @@ -30537,9 +29772,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001567" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001513" @@ -30740,9 +29972,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001562" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000578" @@ -30912,9 +30141,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000579" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001563" } ] }, "type" : "CLASS", @@ -30970,9 +30196,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000651" } ] }, "type" : "CLASS", @@ -31016,9 +30239,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001206" } ] }, "type" : "CLASS", @@ -31046,9 +30266,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000645" } ] }, "type" : "CLASS", @@ -31171,9 +30388,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000644" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -31519,9 +30733,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001701" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -31922,9 +31133,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000642" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -32115,9 +31323,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000468" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000470" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -32215,9 +31420,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001511" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -32255,9 +31457,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000327" } ] }, "type" : "CLASS", @@ -32290,9 +31489,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001640" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001510" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -33283,9 +32479,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000610" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -33351,9 +32544,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001931" } ] }, "type" : "CLASS", @@ -33369,9 +32559,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001930" } ] }, "type" : "CLASS", @@ -33398,9 +32585,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000599" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -33669,9 +32853,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000633" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -33789,9 +32970,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000608" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -33799,29 +32977,26 @@ "type" : "CLASS", "lbl" : "open" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000613", + "id" : "http://purl.obolibrary.org/obo/PATO_0001945", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A moderate yellow-orange to orange color.", + "xrefs" : [ "wordreference:wordreference" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000614" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "disoriented" + "lbl" : "ochre" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001945", + "id" : "http://purl.obolibrary.org/obo/PATO_0000613", "meta" : { "definition" : { - "val" : "A moderate yellow-orange to orange color.", - "xrefs" : [ "wordreference:wordreference" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -33830,7 +33005,7 @@ } ] }, "type" : "CLASS", - "lbl" : "ochre" + "lbl" : "disoriented" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001946", "meta" : { @@ -33900,38 +33075,35 @@ "type" : "CLASS", "lbl" : "wholly anterioralized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000614", + "id" : "http://purl.obolibrary.org/obo/PATO_0001944", "meta" : { "definition" : { - "val" : "A pattern where all the repeated elements are oriented in the same direction.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A color consisting of yellow and orange hue.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000613" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "oriented" + "lbl" : "yellow orange" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001944", + "id" : "http://purl.obolibrary.org/obo/PATO_0000614", "meta" : { "definition" : { - "val" : "A color consisting of yellow and orange hue.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A pattern where all the repeated elements are oriented in the same direction.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "yellow orange" + "lbl" : "oriented" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000628", "meta" : { @@ -33997,9 +33169,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001957" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -34030,9 +33199,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001861" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -34248,9 +33414,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001958" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -34490,9 +33653,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002038" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -34626,9 +33786,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000619" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -35092,9 +34249,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-09-25T15:11:47Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0005013" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -35119,9 +34273,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "wasila.dahdul" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0005012" } ] }, "type" : "CLASS", @@ -35287,6 +34438,10 @@ }, "type" : "CLASS", "lbl" : "multinucleate" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#consider", + "type" : "PROPERTY", + "lbl" : "consider" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001901", "meta" : { @@ -35296,19 +34451,12 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001900" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", "lbl" : "back" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#consider", - "type" : "PROPERTY", - "lbl" : "consider" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001902", "meta" : { @@ -35333,9 +34481,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001901" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -35608,9 +34753,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001926" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -35669,9 +34811,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001927" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -36368,9 +35507,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-07-05T03:18:03Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002383" } ] }, "type" : "CLASS", @@ -36406,9 +35542,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002382" } ] }, "type" : "CLASS", @@ -36761,9 +35894,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002394" } ] }, "type" : "CLASS", @@ -36808,9 +35938,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002393" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-11-15T05:33:05Z" @@ -37219,9 +36346,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Luke Slater" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0045093" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-12-22T14:16:43Z" @@ -37246,9 +36370,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Luke Slater" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0045094" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -37283,9 +36404,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0045091" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -37323,9 +36441,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Luke Slater" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0045092" } ] }, "type" : "CLASS", @@ -37868,9 +36983,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001494" } ] }, "type" : "CLASS", @@ -37968,9 +37080,6 @@ }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001493" } ] }, "type" : "CLASS", @@ -38918,9 +38027,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002354" } ] }, "type" : "CLASS", @@ -39065,9 +38171,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-31T04:52:04Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002355" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -39319,9 +38422,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-03-16T06:32:57Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002361" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -39479,9 +38579,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002362" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-03-16T06:31:57Z" }, { @@ -39543,9 +38640,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0025002" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -39619,53 +38713,50 @@ "type" : "CLASS", "lbl" : "obsolete consumption quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0025002", + "id" : "http://purl.obolibrary.org/obo/PATO_0001035", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration.", - "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "drinkable", + "val" : "force amplitude", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0025001" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2015-09-01T16:19:02Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "pbuttigieg" } ] }, "type" : "CLASS", - "lbl" : "potable" + "lbl" : "force" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001035", + "id" : "http://purl.obolibrary.org/obo/PATO_0025002", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.", - "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration.", + "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "force amplitude", + "val" : "drinkable", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2015-09-01T16:19:02Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "pbuttigieg" } ] }, "type" : "CLASS", - "lbl" : "force" + "lbl" : "potable" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000186", "meta" : { @@ -39733,9 +38824,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001154" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -40236,9 +39324,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001046" } ] }, "type" : "CLASS", @@ -40414,9 +39499,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002376" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -40451,9 +39533,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001043" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -40560,9 +39639,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-07-05T02:55:10Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002377" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -40900,9 +39976,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -40988,9 +40061,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-06-16T06:54:01Z" @@ -41012,9 +40082,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001456" } ] }, "type" : "CLASS", @@ -41027,9 +40094,6 @@ "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-06-16T06:50:59Z" }, { @@ -41066,9 +40130,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001455" } ] }, "type" : "CLASS", @@ -41081,9 +40142,6 @@ "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" }, { @@ -41193,9 +40251,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001460" } ] }, "type" : "CLASS", @@ -41306,9 +40361,6 @@ "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -41357,9 +40409,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-06-16T06:40:15Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002300" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -41979,9 +41028,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001459" } ] }, "type" : "CLASS", @@ -42548,9 +41594,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002328" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-23T12:06:38Z" }, { @@ -42710,9 +41753,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-23T12:06:54Z" @@ -42782,9 +41822,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001596" } ] }, "type" : "CLASS", @@ -42905,9 +41942,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001476" } ] }, "type" : "CLASS", @@ -42937,9 +41971,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-10-12T12:51:19Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002321" } ] }, "type" : "CLASS", @@ -42965,6 +41996,19 @@ }, "type" : "CLASS", "lbl" : "temporal distribution quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000142", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete substance" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001476", "meta" : { @@ -42979,28 +42023,12 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001475" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", "lbl" : "decreased position" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000142", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete substance" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002320", "meta" : { @@ -43116,9 +42144,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002322" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-10-12T12:50:59Z" @@ -43801,9 +42826,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002334" } ] }, "type" : "CLASS", @@ -43893,9 +42915,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002333" } ] }, "type" : "CLASS", @@ -43978,9 +42997,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002332" } ] }, "type" : "CLASS", @@ -44016,9 +43032,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001840" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002452" } ] }, "type" : "CLASS", @@ -44045,9 +43058,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-31T12:28:57Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002331" } ] }, "type" : "CLASS", @@ -44261,9 +43271,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001896" } ] }, "type" : "CLASS", @@ -44305,9 +43312,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001899" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44340,9 +43344,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001412" } ] }, "type" : "CLASS", @@ -44371,9 +43372,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001897" } ] }, "type" : "CLASS", @@ -44407,9 +43405,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001411" } ] }, "type" : "CLASS", @@ -44428,9 +43423,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000570" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44448,9 +43440,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001416" } ] }, "type" : "CLASS", @@ -44492,9 +43481,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001898" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44548,9 +43534,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001417" } ] }, "type" : "CLASS", @@ -44586,9 +43569,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001892" } ] }, "type" : "CLASS", @@ -44703,9 +43683,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001893" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45054,9 +44031,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000569" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45160,9 +44134,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000573" } ] }, "type" : "CLASS", @@ -45193,9 +44164,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000574" } ] }, "type" : "CLASS", @@ -45350,9 +44318,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000586" } ] }, "type" : "CLASS", @@ -45452,9 +44417,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001202" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000587" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -45783,9 +44745,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000582" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45812,9 +44771,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000583" } ] }, "type" : "CLASS", @@ -45850,9 +44806,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000412" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000584" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -45889,9 +44842,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000585" } ] }, "type" : "CLASS", @@ -46149,9 +45099,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000600" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -46317,9 +45264,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000591" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -46354,9 +45298,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000592" } ] }, "type" : "CLASS", @@ -46450,9 +45391,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000595" } ] }, "type" : "CLASS", @@ -46526,9 +45464,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000596" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -46719,9 +45654,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001860" } ] }, "type" : "CLASS", @@ -46880,9 +45812,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001355" } ] }, "type" : "CLASS", @@ -47182,9 +46111,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000389" } ] }, "type" : "CLASS", @@ -47344,9 +46270,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001859" } ] }, "type" : "CLASS", @@ -47365,9 +46288,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001959" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47552,9 +46472,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000546" } ] }, "type" : "CLASS", @@ -47599,9 +46516,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000547" } ] }, "type" : "CLASS", @@ -47838,9 +46752,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001884" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47912,9 +46823,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001885" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47932,9 +46840,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001886" } ] }, "type" : "CLASS", @@ -48017,9 +46922,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001887" } ] }, "type" : "CLASS", @@ -48328,39 +47230,36 @@ "type" : "CLASS", "lbl" : "catalytic activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001817", + "id" : "http://purl.obolibrary.org/obo/PATO_0000969", "meta" : { "definition" : { - "val" : "A fatigability which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally small.", + "xrefs" : [ "Answers.com:Answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low fatigability", + "val" : "dwarfed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001816" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased fatigability" + "lbl" : "dwarf-like" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000969", + "id" : "http://purl.obolibrary.org/obo/PATO_0001817", "meta" : { "definition" : { - "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally small.", - "xrefs" : [ "Answers.com:Answers.com" ] + "val" : "A fatigability which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "dwarfed", + "val" : "low fatigability", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -48369,7 +47268,7 @@ } ] }, "type" : "CLASS", - "lbl" : "dwarf-like" + "lbl" : "decreased fatigability" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001818", "meta" : { @@ -48379,9 +47278,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002026" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48430,9 +47326,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001817" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48522,9 +47415,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000964" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48592,9 +47482,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000963" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48816,9 +47703,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001825" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48884,9 +47768,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002112" } ] }, "type" : "CLASS", @@ -48954,9 +47835,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001823" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48985,9 +47863,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001826" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49033,9 +47908,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001824" } ] }, "type" : "CLASS", @@ -49165,9 +48037,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001838" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49229,9 +48098,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001839" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49265,9 +48131,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001830" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49283,9 +48146,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000982" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49306,9 +48166,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001833" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49329,9 +48186,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000983" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49362,9 +48216,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000984" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49380,9 +48231,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000985" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49403,9 +48251,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001831" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49456,9 +48301,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001834" } ] }, "type" : "CLASS", @@ -49540,9 +48382,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001832" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49558,9 +48397,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000504" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49596,9 +48432,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001835" } ] }, "type" : "CLASS", @@ -49625,9 +48458,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000505" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49897,9 +48727,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001844" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -50093,9 +48920,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000516" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -50116,9 +48940,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001843" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -50139,9 +48960,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000513" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -50774,22 +49592,16 @@ }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "'increase in temperature' is-opposite-of 'decrease in temperature'" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", - "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#is_class_level", - "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "is_opposite_of" } ] }, "type" : "PROPERTY", - "lbl" : "is opposite of" + "lbl" : "is_opposite_of" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002608", "meta" : { @@ -50846,9 +49658,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000937" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -50864,9 +49673,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000938" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -51181,9 +49987,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001808" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -51269,9 +50072,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001807" } ] }, "type" : "CLASS", @@ -51427,9 +50227,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000955" } ] }, "type" : "CLASS", @@ -51445,9 +50242,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000956" } ] }, "type" : "CLASS", @@ -51773,9 +50567,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000911" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -51796,9 +50587,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000912" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -51974,9 +50762,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002220" } ] }, "type" : "CLASS", @@ -52720,9 +51505,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002271" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-10-26T02:00:20Z" @@ -52770,9 +51552,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002270" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-10-26T02:04:45Z" @@ -52820,9 +51599,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002286" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-03-10T09:07:57Z" @@ -52847,9 +51623,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002285" } ] }, "type" : "CLASS", @@ -52871,9 +51644,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002282" } ] }, "type" : "CLASS", @@ -52937,9 +51707,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-03-30T11:50:21Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002288" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -52964,9 +51731,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002287" } ] }, "type" : "CLASS", @@ -53041,9 +51805,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002283" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -53113,9 +51874,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002298" } ] }, "type" : "CLASS", @@ -53172,9 +51930,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002297" } ] }, "type" : "CLASS", @@ -53674,9 +52429,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002263" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -53870,9 +52622,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002222" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-07-09T01:51:52Z" @@ -53957,9 +52706,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-07-09T01:54:22Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002221" } ] }, "type" : "CLASS", @@ -54662,9 +53408,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002248" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-08-09T04:17:04Z" @@ -54725,9 +53468,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002249" } ] }, "type" : "CLASS", @@ -54951,9 +53691,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002246" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -55026,9 +53763,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002245" } ] }, "type" : "CLASS", @@ -55407,9 +54141,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-08-09T04:17:19Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002251" } ] }, "type" : "CLASS", @@ -55459,9 +54190,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002250" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-08-09T04:17:37Z" @@ -55737,10 +54465,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001247", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002332", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002331" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001381", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002017", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001280", "pred" : "is_a", @@ -55749,6 +54485,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001756", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001585" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002029", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002028" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098772", "pred" : "is_a", @@ -55757,10 +54497,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001053" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001700", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001699" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002038", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000639" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002441", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002442" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0042995", "pred" : "is_a", @@ -55829,6 +54581,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000937", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000938" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000328", "pred" : "is_a", @@ -55889,6 +54645,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002252", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001691", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001690" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002115", "pred" : "is_a", @@ -55913,14 +54673,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001629", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002178", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001729", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002178", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005004", "pred" : "is_a", @@ -56005,10 +54765,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002355", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002354" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000947", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002318" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002246", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002245" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001712", "pred" : "is_a", @@ -56025,10 +54793,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001862", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000274" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002028", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002029" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002026", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001818" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002339", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000454" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001975", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001206" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002332" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001515", "pred" : "is_a", @@ -56045,6 +54829,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001779", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001808", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001807" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045065", "pred" : "is_a", @@ -56105,6 +54893,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000409", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001460", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001459" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001921", "pred" : "is_a", @@ -56113,6 +54905,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002221", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002221" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043229", "pred" : "is_a", @@ -56125,6 +54921,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001593", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001592" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000599", "pred" : "is_a", @@ -56145,6 +54945,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000415", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001794" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001690", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001691" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000708", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000706" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002260", "pred" : "is_a", @@ -56153,6 +54961,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045087", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045000" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000938", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000937" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045091", "pred" : "is_a", @@ -56173,6 +54985,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001473", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000470" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001581", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001580" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001890", "pred" : "is_a", @@ -56249,6 +55065,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002464", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002039", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002040" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001713", "pred" : "is_a", @@ -56285,10 +55105,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002179", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002322", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002321" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002189", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001632", "pred" : "is_a", @@ -56306,17 +55134,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001590" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", + "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048585", "pred" : "is_a", @@ -56341,6 +55169,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001290" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000592" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001241", "pred" : "is_a", @@ -56353,6 +55185,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001400", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002249", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002248" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001549", "pred" : "is_a", @@ -56433,18 +55269,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000070", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0001555" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001790", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001788" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002250", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002248" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001966", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001966", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002334", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002333" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001986", "pred" : "is_a", @@ -56461,6 +55305,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001475", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009967", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -56469,6 +55317,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0025002", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0025001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001863", "pred" : "is_a", @@ -56481,6 +55333,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001233", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001234" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001584", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001583" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002332", "pred" : "is_a", @@ -56497,6 +55357,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0030000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000646" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000600", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000599" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004035", "pred" : "subPropertyOf", @@ -56513,6 +55377,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001294", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001292" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001694" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001578", "pred" : "is_a", @@ -56557,6 +55425,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001393", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001374" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002139", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002247", "pred" : "is_a", @@ -56585,10 +55457,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001472", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002220", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002263" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001242" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002248", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002249" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000375" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001401", "pred" : "is_a", @@ -56597,6 +55481,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000911", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002442", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002441" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000386", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000387" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002333", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002334" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0033674", "pred" : "is_a", @@ -56605,18 +55501,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001620", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002018", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002017" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001248", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001380", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002321", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002322" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000955" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001380", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000066", "pred" : "is_a", @@ -56689,6 +55593,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002022", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002334" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000592", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000591" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098797", "pred" : "is_a", @@ -56725,6 +55633,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001657", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015022", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015023" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001611", "pred" : "is_a", @@ -56777,6 +55689,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002538", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002005" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001229", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000328" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002258", "pred" : "inverseOf", @@ -56813,6 +55729,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002042", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001715" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001583", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001584" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", "pred" : "is_a", @@ -56865,14 +55785,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001514", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0048584", - "pred" : "http://purl.obolibrary.org/obo/RO_0002213", - "obj" : "http://purl.obolibrary.org/obo/GO_0050896" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048585", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0050896" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048584", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0050896" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001767", "pred" : "is_a", @@ -56881,10 +55801,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002069", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002067" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", "pred" : "is_a", @@ -56893,6 +55809,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001539", "pred" : "is_a", @@ -56921,14 +55841,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001773", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001178" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001643", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001178" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001402", "pred" : "is_a", @@ -56937,6 +55857,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001542", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001817", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001816" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001171", "pred" : "is_a", @@ -56961,10 +55885,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001599", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002376", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001318", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000189" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001927" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002452", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001485" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", "pred" : "is_a", @@ -57049,6 +55985,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0055001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002001", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002002" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002362", "pred" : "is_a", @@ -57061,6 +56001,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000169", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045093", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045091" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002002", "pred" : "is_a", @@ -57105,6 +56049,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000998", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000992" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001493", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001494" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0025001", "pred" : "is_a", @@ -57117,6 +56065,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0048585", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048583" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000470", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001997" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002338", "pred" : "is_a", @@ -57125,6 +56077,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002478", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001410" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045092", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045094" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000083", "pred" : "is_a", @@ -57205,14 +56161,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002367", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000384" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002367", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000384" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", "pred" : "is_a", @@ -57245,6 +56201,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045082", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001818", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002026" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001806", "pred" : "is_a", @@ -57265,6 +56225,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001655", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001817" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000596", "pred" : "is_a", @@ -57289,6 +56253,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001607", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001846" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002472", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002471" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001645", "pred" : "is_a", @@ -57301,6 +56269,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001390", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001389" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001701", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001501" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001764", "pred" : "is_a", @@ -57309,6 +56281,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001726", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001721" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001707", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001706" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001788", "pred" : "is_a", @@ -57345,34 +56321,50 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0023051", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0050789" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002364", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001154" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001965", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001877", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001419" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002351", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001877", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001419" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002145", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002144" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002140", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002138" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045091", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045093" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002541", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001431" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001152" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002460", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001431" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000261", "pred" : "is_a", @@ -57381,6 +56373,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002482", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000438", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001227" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000336", "pred" : "is_a", @@ -57449,6 +56445,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009893", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048518" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001901", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001900" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002481", "pred" : "subPropertyOf", @@ -57489,6 +56489,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0025000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001807", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001808" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002148", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002147" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001359", "pred" : "is_a", @@ -57501,6 +56509,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000625" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002354", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002355" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045044", "pred" : "is_a", @@ -57521,6 +56533,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000381", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000380" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002300", "pred" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", @@ -57533,14 +56549,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001614", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000467", "pred" : "is_a", @@ -57577,6 +56593,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001499", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002221", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005488", "pred" : "is_a", @@ -57585,6 +56605,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000911", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000912" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001808", "pred" : "is_a", @@ -57597,6 +56621,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002286", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002384" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002246" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001595", "pred" : "is_a", @@ -57649,6 +56677,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002428", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002263" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001472", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001596" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001592", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001593" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015014", "pred" : "is_a", @@ -57661,6 +56697,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002483", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001580", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001581" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001962", "pred" : "is_a", @@ -57729,6 +56769,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001244", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000380", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000381" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001168", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001167" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000945", "pred" : "is_a", @@ -57757,6 +56805,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002269", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002377", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002376" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001927", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001926" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045031", "pred" : "is_a", @@ -57829,14 +56885,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000964", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000957" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001627", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001626" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002091", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001627", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001626" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001594", "pred" : "is_a", @@ -57870,13 +56926,21 @@ "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002334" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001699", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001700" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045094", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045092" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0055002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", "pred" : "is_a", @@ -57913,6 +56977,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001762", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000279" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001959", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001861" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002147", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002148" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001888", "pred" : "is_a", @@ -57933,10 +57005,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001626", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002002", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002001" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0016301", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0016310" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001206", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001975" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001903", "pred" : "is_a", @@ -57949,14 +57029,34 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051348", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051338" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001494", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001493" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000911" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002148", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001154", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002364" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000082", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001167", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001168" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000708" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005013", "pred" : "is_a", @@ -57985,6 +57085,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000070", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000068" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001227", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000438" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000440", "pred" : "is_a", @@ -58001,14 +57105,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0048584", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048583" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000944", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002124", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000944", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002366", "pred" : "is_a", @@ -58045,14 +57149,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002228", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000719", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002596", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002500" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000719", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001931", "pred" : "is_a", @@ -58069,6 +57173,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002050", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0001905" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000599", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000600" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002186", "pred" : "is_a", @@ -58077,6 +57185,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000300", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001046", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001043" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001269", "pred" : "is_a", @@ -58093,10 +57205,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000625", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000370", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000365" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001324", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000619", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000633" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000608", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000610" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045006", "pred" : "is_a", @@ -58145,6 +57269,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005622", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005575" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001958", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001957" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002139", "pred" : "is_a", @@ -58173,6 +57301,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0019220", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051174" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001618" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", "pred" : "is_a", @@ -58213,6 +57345,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002157", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001852" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002251", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002250" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000927", "pred" : "is_a", @@ -58237,6 +57373,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001026", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002287", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002288" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000119", "pred" : "is_a", @@ -58245,6 +57385,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000614", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000613" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002014", "pred" : "subPropertyOf", @@ -58253,6 +57397,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002058" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001389", "pred" : "is_a", @@ -58265,6 +57413,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0031325", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009893" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002069", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002068" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001375", "pred" : "is_a", @@ -58285,14 +57437,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002400", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001409" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0042326", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002418", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002427" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042326", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000600", "pred" : "is_a", @@ -58301,18 +57453,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001418", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001487", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001372", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001294" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001487", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004047", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002418" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000505", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000504" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002322", "pred" : "is_a", @@ -58321,6 +57477,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001398", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002102" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001162", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001163" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001341", "pred" : "is_a", @@ -58333,6 +57493,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009892", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0019222" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002250", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002251" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001462", "pred" : "is_a", @@ -58369,6 +57533,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001960", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001825", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001826" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002220", "pred" : "is_a", @@ -58445,10 +57613,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002335", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001619" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005575" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001715", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001714" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002383", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002382" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", "pred" : "is_a", @@ -58469,6 +57649,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000150", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001859", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001860" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000614", "pred" : "is_a", @@ -58477,6 +57661,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000700", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000701" }, { "sub" : "http://purl.obolibrary.org/obo/CL_0000000", "pred" : "is_a", @@ -58505,6 +57693,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002015", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002336" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002056", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002055" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002286", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002285" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001376", "pred" : "is_a", @@ -58521,6 +57717,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000631", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002068", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002069" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002298", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002297" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005018", "pred" : "is_a", @@ -58537,6 +57741,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045041", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000300", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001378", "pred" : "is_a", @@ -58577,14 +57785,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051338", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0016740" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001463", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001464" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004046", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002418" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001463", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001464" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001555", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", @@ -58605,6 +57813,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001546", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002198" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002382", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002383" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001586", "pred" : "is_a", @@ -58641,6 +57853,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002074", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001824", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001406", "pred" : "is_a", @@ -58653,6 +57869,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001796", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001958" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001946", "pred" : "is_a", @@ -58669,6 +57889,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001704", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001424" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001839", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001838" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002465", "pred" : "is_a", @@ -58721,10 +57945,18 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0048523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0050794" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002495", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002494" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002362", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002361" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045004", "pred" : "is_a", @@ -58737,6 +57969,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001242", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002469", "pred" : "is_a", @@ -58765,6 +58001,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005929", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/GO_0030990" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002471", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002472" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030005", "pred" : "is_a", @@ -58773,14 +58013,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015010", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015009" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0010004", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0010002" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000381", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000044" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0010004", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0010002" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002109", "pred" : "is_a", @@ -58797,6 +58037,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002349", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002144", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002145" }, { "sub" : "http://purl.obolibrary.org/obo/pato#has_divisor_quality", "pred" : "subPropertyOf", @@ -58809,6 +58053,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005017", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000955", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000956" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000701", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000700" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000546", "pred" : "is_a", @@ -58873,10 +58125,18 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002405", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002412" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001043", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001046" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001989", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001591" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001152", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001153" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002595", "pred" : "subPropertyOf", @@ -58885,6 +58145,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002404", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002411" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000328", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001229" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000937", "pred" : "is_a", @@ -58925,22 +58189,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001440", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001531" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002376", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001855", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002163", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002376", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001645" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002163", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001645" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001570", "pred" : "is_a", @@ -58953,14 +58217,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002537", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0042327", - "pred" : "http://purl.obolibrary.org/obo/RO_0002213", - "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002137", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002136" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042327", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001935", "pred" : "is_a", @@ -58989,14 +58253,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001984", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040005", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0040005", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001900", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001901" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048018", "pred" : "is_a", @@ -59018,13 +58286,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002027" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0040014", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001825" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045009", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040014", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002150", "pred" : "is_a", @@ -59053,6 +58325,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002352", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001838", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001839" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000389", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001863" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001868", "pred" : "is_a", @@ -59078,13 +58358,25 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0010563", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0031324" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002494", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002495" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001863", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000389" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002361", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002362" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002181", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010563", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0031324" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000464", "pred" : "is_a", @@ -59149,6 +58441,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002258", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002324" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002058", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002057" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002288", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002287" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001870", "pred" : "is_a", @@ -59169,6 +58469,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002385", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002384" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000956", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000955" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002023", "pred" : "subPropertyOf", @@ -59229,6 +58533,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001486", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001163", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001162" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001827", "pred" : "is_a", @@ -59353,6 +58661,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002070" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001638" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040006", "pred" : "is_a", @@ -59385,6 +58697,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045067", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002271", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002270" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000665", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000327" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002009", "pred" : "is_a", @@ -59401,10 +58721,18 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005515", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005488" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000513", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000516" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0050790" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002282" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001178", "pred" : "is_a", @@ -59425,14 +58753,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000689", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001200", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001890" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002087", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002090" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001200", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001890" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043393", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -59441,6 +58769,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000410", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000985", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000984" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043549", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -59477,6 +58809,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002375", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000428", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000427" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002024", "pred" : "subPropertyOf", @@ -59489,6 +58825,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001397", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001194", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001192" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001494", "pred" : "is_a", @@ -59497,6 +58837,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045080", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002146" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002271" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045060", "pred" : "is_a", @@ -59505,6 +58849,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002242", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002282", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002283" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001581", "pred" : "is_a", @@ -59533,6 +58881,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005886", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0016020" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001603", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001604" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040001", "pred" : "is_a", @@ -59541,6 +58893,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001627", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001628" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002256", "pred" : "is_a", @@ -59549,10 +58905,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002394", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000515" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001930", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001931" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002396", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001723" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001615", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001614" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0033674", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -59585,6 +58953,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001035" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001833", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001832" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001637", "pred" : "is_a", @@ -59593,6 +58965,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002285", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001712", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001713" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001942", "pred" : "is_a", @@ -59601,14 +58977,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001601", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0048584", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0048518" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045029", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048584", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048518" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001021", "pred" : "is_a", @@ -59685,6 +59061,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000078", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002323" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002052", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001710", "pred" : "is_a", @@ -59701,6 +59081,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000308", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000309" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001192", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001194" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002254", "pred" : "subPropertyOf", @@ -59709,6 +59097,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000274", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001434" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000404", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000415" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015025", "pred" : "is_a", @@ -59729,14 +59121,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0007165", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0007154" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045021", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001408", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045021", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002608", "pred" : "subPropertyOf", @@ -59765,6 +59157,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001385" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000888", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000892" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002333", "pred" : "is_a", @@ -59777,6 +59173,18 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009966", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0025001", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0025002" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002051", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001614", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001615" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001472", "pred" : "is_a", @@ -59785,6 +59193,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0020000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000047" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001832", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001833" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048518", "pred" : "is_a", @@ -59805,6 +59217,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001639" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001759", "pred" : "is_a", @@ -59817,6 +59233,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000303", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002040", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002039" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002246", "pred" : "is_a", @@ -59841,6 +59261,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001844", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001843" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001723", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001724" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002105", "pred" : "is_a", @@ -59873,10 +59301,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000760", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001726", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001725" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001815" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002394", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002393" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002088", "pred" : "is_a", @@ -59909,6 +59345,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000516" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001171", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001172" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001360", "pred" : "is_a", @@ -59921,6 +59361,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000609", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000610" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002285", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002286" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001997", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000470" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", @@ -59933,6 +59381,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001260", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000951" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002043", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002042" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002297", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002298" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098590", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -59945,6 +59401,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001621", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000963", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000964" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002055", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002056" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002013", "pred" : "subPropertyOf", @@ -59957,6 +59421,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000639", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002038" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001749", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005006", "pred" : "is_a", @@ -59977,6 +59449,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001289", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001287" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000757", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000758" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001922", "pred" : "is_a", @@ -59993,14 +59469,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000642", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002014", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002013" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002222" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002014", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002013" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002629", "pred" : "subPropertyOf", @@ -60025,18 +59501,30 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002500" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000309", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000308" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001172", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001171" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000643", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001598" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002138", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002393", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002394" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002050", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002138", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045013", "pred" : "is_a", @@ -60057,6 +59545,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002100", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001714", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001715" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045026", "pred" : "is_a", @@ -60097,6 +59589,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001605", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001835", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001834" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001468", "pred" : "is_a", @@ -60117,6 +59613,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001768", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002140", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002139" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001482", "pred" : "is_a", @@ -60129,6 +59629,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002104", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001823", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001824" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000299", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000300" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002380", "pred" : "is_a", @@ -60157,6 +59665,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000152" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001355", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001851", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -60173,6 +59685,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001914", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001912" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001628", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001627" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002526", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002491" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000308", "pred" : "is_a", @@ -60197,6 +59717,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0098796", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0016020" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002042", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002043" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001923", "pred" : "is_a", @@ -60205,10 +59733,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002212", "pred" : "subPropertyOf", @@ -60245,6 +59769,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002340", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002339" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000964", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000963" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002240", "pred" : "is_a", @@ -60257,6 +59785,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001288", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001287" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000613", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001201", "pred" : "is_a", @@ -60265,6 +59797,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000504", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000505" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900121", "pred" : "is_a", @@ -60273,10 +59809,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001168", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001020" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000516", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000513" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000423", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000056" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000758", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000757" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002450", "pred" : "is_a", @@ -60297,6 +59841,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002015", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002013" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002263", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002131", "pred" : "is_a", @@ -60321,6 +59869,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001580", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001690" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000769", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000770" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001725", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001726" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002414", "pred" : "is_a", @@ -60329,6 +59885,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001715", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000574" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001713", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001712" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002164", "pred" : "is_a", @@ -60345,6 +59905,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001604", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001603" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002031", "pred" : "is_a", @@ -60373,6 +59937,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002453", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001835" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002172", "pred" : "is_a", @@ -60397,6 +59965,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002262", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001931", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001930" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000037", "pred" : "is_a", @@ -60445,6 +60017,10 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000066", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000067" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001307" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", "pred" : "is_a", @@ -60461,6 +60037,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002282", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002504", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002527" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0044237", "pred" : "is_a", @@ -60485,6 +60065,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001549", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001550" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001349", "pred" : "is_a", @@ -60525,6 +60109,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002223", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000303", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001688", "pred" : "is_a", @@ -60601,6 +60189,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001739", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000689", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000690" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001543", "pred" : "is_a", @@ -60629,6 +60221,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001664", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002072", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002071" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002566", "pred" : "subPropertyOf", @@ -60653,22 +60249,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001950", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000944" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001417", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001416" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001538", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045058", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001761", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001767" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045037", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001761", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001767" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0016310", "pred" : "is_a", @@ -60721,6 +60325,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015002" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001635", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001636" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009893", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -60741,6 +60349,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045028", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000891" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000633", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000619" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000584", "pred" : "is_a", @@ -60781,10 +60393,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000048" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000982", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000983" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002023", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002630" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001319", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001318" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0030000", "pred" : "is_a", @@ -60805,6 +60425,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002385", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001410" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000546", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000547" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002343", "pred" : "is_a", @@ -60817,6 +60441,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002392", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000304", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002198", "pred" : "is_a", @@ -60833,6 +60461,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002598", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002596" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001669", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001670" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", @@ -60853,6 +60485,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002098", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000642", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000651" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002305", "pred" : "is_a", @@ -60873,6 +60509,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002314", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002502" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000414", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002272", "pred" : "is_a", @@ -60913,14 +60553,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001028", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0010647", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0010646" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002333", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000057" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010647", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010646" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040013", "pred" : "is_a", @@ -60945,6 +60585,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001575", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002071", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002072" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001838", "pred" : "is_a", @@ -60953,6 +60597,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002046", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002192", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002191" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001191", "pred" : "is_a", @@ -60993,6 +60641,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001988", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001416", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001417" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040025", "pred" : "is_a", @@ -61001,6 +60653,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000119" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001538" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001369", "pred" : "is_a", @@ -61009,6 +60665,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001695", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001779", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001778" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001987", "pred" : "is_a", @@ -61021,6 +60681,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002024", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002629" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000569", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000570" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001307", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001308" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0000000", "pred" : "is_a", @@ -61045,6 +60713,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001622", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001621" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001743", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001742" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002239", "pred" : "is_a", @@ -61101,6 +60777,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002425", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000644", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000645" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000582", "pred" : "is_a", @@ -61113,6 +60793,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002331", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002217" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002196", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002195" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001488", "pred" : "is_a", @@ -61129,6 +60813,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002333", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002075", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002074" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000983", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000982" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000570", "pred" : "is_a", @@ -61149,6 +60841,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002438", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000547", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000546" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001348", "pred" : "is_a", @@ -61173,6 +60869,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001444", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001442" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000415", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098796", "pred" : "is_a", @@ -61265,10 +60965,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001566" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002074", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002075" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002195", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002196" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001831", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001830" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045048", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001843", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001844" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001613", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001612" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045056", "pred" : "is_a", @@ -61281,6 +61001,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0031325", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0031323" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001625", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001624" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001461", "pred" : "is_a", @@ -61313,6 +61037,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000039", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0005013", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0005012" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001835", "pred" : "is_a", @@ -61385,6 +61113,10 @@ "sub" : "http://purl.obolibrary.org/obo/CARO_0000014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/CARO_0000003" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000610", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000608" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004032", "pred" : "subPropertyOf", @@ -61397,14 +61129,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002304", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000757", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000185" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000757", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000185" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002111", "pred" : "is_a", @@ -61413,6 +61145,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002230", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000402", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000414" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000984", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000985" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002096", "pred" : "is_a", @@ -61493,6 +61233,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002315", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000427", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", "pred" : "is_a", @@ -61501,6 +61245,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045035", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001655" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000644" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001445", "pred" : "is_a", @@ -61577,14 +61325,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001333", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045013", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045013", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001229", "pred" : "is_a", @@ -61642,9 +61390,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000040" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001193", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001636", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001635" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", "pred" : "is_a", @@ -61653,10 +61401,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045049", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001193", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001258", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000954" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001830", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001831" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045023", "pred" : "is_a", @@ -61665,6 +61421,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002352", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001729" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001613" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", "pred" : "is_a", @@ -61673,6 +61433,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0043226", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0110165" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001624", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001625" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", "pred" : "is_a", @@ -61689,6 +61453,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001879", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0005012", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0005013" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000405", "pred" : "is_a", @@ -61745,14 +61513,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000639" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002024", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001999" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002024", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002445", "pred" : "is_a", @@ -61765,6 +61533,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001832", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000651", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000642" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002041", "pred" : "is_a", @@ -61857,6 +61629,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000370", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001510", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001511" }, { "sub" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "pred" : "subPropertyOf", @@ -61901,6 +61677,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001409", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001897", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001896" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045054", "pred" : "is_a", @@ -61933,6 +61713,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001352", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001019" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001887" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002357", "pred" : "is_a", @@ -61945,10 +61729,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002461", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002165" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001764", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001765" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002051", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001777" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002533", "pred" : "is_a", @@ -61969,6 +61761,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000017", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001301" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000892", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000888" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045042", "pred" : "is_a", @@ -61989,14 +61785,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002484", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001977" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002540", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004034", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002263" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002540", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000141", "pred" : "is_a", @@ -62005,14 +61801,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0048522", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0050794" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002052", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000021", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002052", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001876", "pred" : "is_a", @@ -62021,6 +61817,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001459", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001460" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001813", "pred" : "is_a", @@ -62073,6 +61873,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002040", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001355" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000760", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000761" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000395", "pred" : "is_a", @@ -62113,6 +61917,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002437", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002527", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002504" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002076", "pred" : "is_a", @@ -62129,14 +61937,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001346", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001343" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002459", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002563", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002464" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002459", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002207", "pred" : "is_a", @@ -62193,6 +62001,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001347", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001335" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001859" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001192", "pred" : "is_a", @@ -62249,18 +62061,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045045", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001741" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001749" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001951", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001278", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000953" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001886" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000336", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000331" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000938", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002264" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001278", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000953" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002336", "pred" : "subPropertyOf", @@ -62277,6 +62101,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001562", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000125" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001678", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001677" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001671", "pred" : "is_a", @@ -62293,6 +62121,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015021" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001896", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001897" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002217", "pred" : "inverseOf", @@ -62309,14 +62141,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002217", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000056" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001814", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002345", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001814", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045034", "pred" : "is_a", @@ -62333,6 +62165,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001654", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001653" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", "pred" : "is_a", @@ -62345,10 +62181,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001545", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001412", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001411" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001763", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001760" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040026", "pred" : "is_a", @@ -62389,14 +62237,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000638", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002430", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000638", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002062", "pred" : "is_a", @@ -62493,6 +62341,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002336", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000760" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002039", "pred" : "is_a", @@ -62501,6 +62353,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001377", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001393" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000422", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000423" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002447", "pred" : "subPropertyOf", @@ -62513,14 +62369,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002077", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001476", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001476", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045076", "pred" : "is_a", @@ -62577,6 +62433,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002191", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002192" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", @@ -62625,10 +62485,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040017", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001433" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001561", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001564" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001657", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001656" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001519", "pred" : "is_a", @@ -62665,6 +62533,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040022", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001318", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001319" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001621", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001622" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", @@ -62673,6 +62549,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002202", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002201" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001743" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", "pred" : "is_a", @@ -62689,6 +62569,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001779" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001887", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001885" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001899", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001898" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0023052", "pred" : "is_a", @@ -62701,6 +62589,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002241", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001979" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001362", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001716" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001604", "pred" : "is_a", @@ -62709,6 +62601,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002218", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000057" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001779" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002431", "pred" : "is_a", @@ -62725,18 +62621,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001470", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002023", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001999" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002023", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002422", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001788", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001790" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002213", "pred" : "inverseOf", @@ -62797,18 +62697,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000624", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", - "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", + "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002435", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000423", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000422" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002389", "pred" : "is_a", @@ -62845,6 +62749,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001477", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002491", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002526" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0031324", "pred" : "is_a", @@ -62905,10 +62813,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045045", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000688", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000695" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002432", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001821", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002112" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001548", "pred" : "is_a", @@ -62969,6 +62885,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001776" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001450", "pred" : "is_a", @@ -62977,6 +62897,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045089", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045088" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001898", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001899" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0000006", "pred" : "is_a", @@ -63037,6 +62961,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001305", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001306" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001919", "pred" : "is_a", @@ -63045,6 +62973,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002086", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002222" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001657" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", @@ -63061,14 +62993,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002324", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002323" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1900121", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_1900120" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002253", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000407" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_1900121", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_1900120" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001886", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045065", "pred" : "is_a", @@ -63081,6 +63017,14 @@ "sub" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001511", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001510" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001765", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001764" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000763", "pred" : "is_a", @@ -63089,18 +63033,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045077", "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045071", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045084", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045071", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001699", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000062" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000695", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000688" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000320", "pred" : "is_a", @@ -63117,6 +63065,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001314" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002304", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001412", "pred" : "is_a", @@ -63129,6 +63081,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001665", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000331", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000336" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000574" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001652", "pred" : "is_a", @@ -63177,6 +63137,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0065009", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0003674" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000487" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0032991", "pred" : "is_a", @@ -63185,10 +63149,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001189", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015003", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015004" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002144", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002327" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002481", "pred" : "is_a", @@ -63202,13 +63174,21 @@ "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002411" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001528", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001519" + "sub" : "http://purl.obolibrary.org/obo/PATO_0000464", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000463" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000585", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000584" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001331" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001528", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001519" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000018", "pred" : "is_a", @@ -63217,6 +63197,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001975", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001976" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015015", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002504", "pred" : "is_a", @@ -63293,10 +63277,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045068", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001663", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001664" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001783", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001651", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001650" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001676" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002411", "pred" : "subPropertyOf", @@ -63321,6 +63317,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002183", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001892" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002468", "pred" : "is_a", @@ -63349,6 +63349,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001760", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001763" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002539", "pred" : "is_a", @@ -63405,30 +63409,58 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000117" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001553" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900122", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_1900120" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001567", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001990", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001567", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001796", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001795" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001566", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001567" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001716", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001362" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000502" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001578", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001577" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001276", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000321" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001312", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001311" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002303", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000460", "pred" : "is_a", @@ -63437,6 +63469,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001423", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001372" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015028", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015027" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045078", "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", @@ -63445,6 +63481,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0031323", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0044237" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000344", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000345" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001787", "pred" : "is_a", @@ -63453,6 +63493,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000982", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000970" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000586", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000955", "pred" : "is_a", @@ -63485,14 +63529,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001746", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001744" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001758", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001757" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001748", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001758", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001757" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002632", "pred" : "is_a", @@ -63513,6 +63557,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001504", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001502" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000573" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001579", "pred" : "is_a", @@ -63525,6 +63573,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001417", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015003" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002327", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001807", "pred" : "is_a", @@ -63569,6 +63625,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001533", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000019" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001650", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001651" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001651", "pred" : "is_a", @@ -63577,6 +63637,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002134", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001311", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001312" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000056", "pred" : "is_a", @@ -63609,10 +63673,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001927", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001795", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002496", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001783", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001782" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001553", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001554" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001901", "pred" : "is_a", @@ -63645,6 +63721,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002518", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001892", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001893" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0030545", "pred" : "is_a", @@ -63673,14 +63753,14 @@ "sub" : "http://purl.obolibrary.org/obo/pato#has_dividend_quality", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/pato#has_ratio_quality" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002197", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051174", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0031323" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002197", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002093", "pred" : "is_a", @@ -63721,18 +63801,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000701", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0005011", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0005011", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1902531", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009966" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001686", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001685" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", "pred" : "is_a", @@ -63741,6 +63825,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001577", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001578" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001275", "pred" : "is_a", @@ -63749,10 +63837,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001698", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001697" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002268", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002099", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002100" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001456", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001455" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000125", "pred" : "is_a", @@ -63773,6 +63873,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015026", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000890", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000891" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002630", "pred" : "is_a", @@ -63805,6 +63909,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001482", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015007" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000440", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002284", "pred" : "is_a", @@ -63845,6 +63953,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001199", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000587", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001525", "pred" : "is_a", @@ -63853,14 +63965,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001717", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001674", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001674", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002022", "pred" : "inverseOf", @@ -63941,6 +64053,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002235", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001500" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000345", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000344" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002214", "pred" : "is_a", @@ -63949,14 +64065,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0010646", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0050794" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001743", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001741" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001606", "pred" : "is_a", @@ -63985,6 +64101,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001954", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001199" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001411", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001412" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001856", "pred" : "is_a", @@ -64005,6 +64125,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002399", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001653", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001654" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002387", "pred" : "is_a", @@ -64065,10 +64189,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000588", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002100", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000967", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001689", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001688" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001052", "pred" : "is_a", @@ -64126,13 +64258,29 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009968" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001161", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001762", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001761" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001677", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001161", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001544", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001545" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001314", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001313" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005024", "pred" : "is_a", @@ -64181,6 +64329,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000984", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000973" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002305", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0032092", "pred" : "is_a", @@ -64197,6 +64349,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001307", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001314" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000891", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000890" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001512", "pred" : "is_a", @@ -64217,6 +64373,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001538", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001861", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001959" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001429", "pred" : "is_a", @@ -64249,6 +64409,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001474", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000327", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000665" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040021", "pred" : "is_a", @@ -64277,6 +64441,10 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000467", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000462" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002411", "pred" : "is_a", @@ -64333,6 +64501,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001782", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001501", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001701" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045067", "pred" : "is_a", @@ -64349,6 +64521,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001761", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001762" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001892", "pred" : "is_a", @@ -64457,6 +64633,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000770", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000769" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002254", "pred" : "is_a", @@ -64501,6 +64681,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045084" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001664", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001663" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001688", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001689" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001676", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001675" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001313", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001314" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001567", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001566" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001566", "pred" : "is_a", @@ -64513,6 +64713,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002353", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000460", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098772", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -64549,6 +64753,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000505", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000375", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000374" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", @@ -64609,6 +64817,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045063", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015011", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015010" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002521", "pred" : "is_a", @@ -64637,6 +64849,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001719", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015023", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015022" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002231", "pred" : "is_a", @@ -64673,6 +64889,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001547" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000387", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000386" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002405", "pred" : "is_a", @@ -64685,14 +64905,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001290", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001753", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002534", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001753", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001535", "pred" : "is_a", @@ -64701,6 +64921,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002123", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002300", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001432", "pred" : "is_a", @@ -64717,6 +64941,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001578", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001549" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045050", "pred" : "is_a", @@ -64729,6 +64957,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001698", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001683", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001684" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002428", "pred" : "is_a", @@ -64737,6 +64969,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002191", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002190" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001695", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001696" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001562", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001563" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048522", "pred" : "is_a", @@ -64773,6 +65013,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0003824", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0003674" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015010", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002165", "pred" : "is_a", @@ -64785,6 +65029,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002108", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000623" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001671", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001672" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045023", "pred" : "is_a", @@ -64813,6 +65061,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002036", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000690", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000689" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045005", "pred" : "is_a", @@ -64869,6 +65121,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002480", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001448" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000330", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000440" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000582", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000583" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000365", "pred" : "is_a", @@ -64913,10 +65173,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001296", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002008", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001454", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000085" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000461", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000460" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000632", "pred" : "is_a", @@ -65017,6 +65285,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001524", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001520" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001857", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001355" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002513", "pred" : "is_a", @@ -65041,6 +65313,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001741" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001670", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001669" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001621", "pred" : "is_a", @@ -65057,14 +65333,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001887", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001886" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002535", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001754", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002535", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002090", "pred" : "subPropertyOf", @@ -65097,6 +65373,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001693" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", "pred" : "is_a", @@ -65109,6 +65389,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0048523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048519" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001485", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002452" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002143", "pred" : "is_a", @@ -65157,14 +65441,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045060", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002073", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002073", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001284", "pred" : "is_a", @@ -65181,6 +65465,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002037", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000570", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000569" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001970", "pred" : "is_a", @@ -65197,6 +65485,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002041" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001596", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001472" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045024", "pred" : "is_a", @@ -65205,10 +65497,18 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009966" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001476", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002428", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002431" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001234", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001233" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001195", "pred" : "is_a", @@ -65233,6 +65533,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0120025", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/GO_0098590" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", "pred" : "is_a", @@ -65241,6 +65545,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000915" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000498", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000499" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000331", "pred" : "is_a", @@ -65265,6 +65573,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001905", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0002050" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000583", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000582" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002515", "pred" : "is_a", @@ -65277,6 +65589,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002524", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000595", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000596" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0007165", "pred" : "is_a", @@ -65357,30 +65673,50 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001316", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002302", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001654", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001652" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015025", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015024" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002168", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002149", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001788" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045092", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045090" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002149", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001788" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002254", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002255" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001782", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001783" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001459" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001685", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001686" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001455", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001456" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900122", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -65393,6 +65729,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0050896", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0008150" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001552", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001551" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040020", "pred" : "is_a", @@ -65401,6 +65741,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002417", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001697", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001698" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", "pred" : "is_a", @@ -65421,14 +65765,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001321", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", @@ -65449,14 +65793,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001839", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0048583", - "pred" : "http://purl.obolibrary.org/obo/RO_0002211", - "obj" : "http://purl.obolibrary.org/obo/GO_0050896" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000062", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001530" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048583", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0050896" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001696", "pred" : "is_a", @@ -65517,6 +65861,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0023057" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001576", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001575" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001510", "pred" : "is_a", @@ -65545,6 +65893,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002290" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001588", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001587" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002301", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045090", "pred" : "is_a", @@ -65569,14 +65925,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000957", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000487", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000488" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005634", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043231" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000463", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000464" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002520", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000584", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000585" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000586", "pred" : "is_a", @@ -65585,6 +65953,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000499", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000498" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015014", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015015" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002224", "pred" : "is_a", @@ -65593,6 +65969,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001328", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001325" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000365", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000370" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030003", "pred" : "is_a", @@ -65605,6 +65985,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002630", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002578" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000596", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000595" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001889", "pred" : "is_a", @@ -65633,14 +66017,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001317", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002070", "pred" : "is_a", @@ -65685,6 +66069,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001697", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001551", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001552" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001671" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002156", "pred" : "is_a", @@ -65697,6 +66089,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001322", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001587", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001588" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001563", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001562" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001684", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001683" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001577", "pred" : "is_a", @@ -65705,6 +66109,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001852", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002181" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001575", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001576" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002035", "pred" : "is_a", @@ -65729,6 +66137,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001680", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000918" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002112", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001821" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001801", "pred" : "is_a", @@ -65745,18 +66157,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001339", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000619", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000627", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000619", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001511", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001696", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001695" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000367", "pred" : "is_a", @@ -65832,17 +66248,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000569", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000119" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002221", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002220" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", + "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002221", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002220" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000569", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000119" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", + "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { @@ -66336,17 +66752,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0003674" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] }, { @@ -66977,15 +67393,15 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001779", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001230" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001552", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001457" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001552", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001457" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001779", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001230" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" @@ -67576,17 +67992,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010648", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010647", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007154" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010647", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010648", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007154" } ] }, { @@ -68080,17 +68496,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045051", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001323" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001664", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001537" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", + "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001664", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001537" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045051", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001323" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", + "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { @@ -68409,6 +68825,14 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000050", "allValuesFromEdges" : [ { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" @@ -68416,18 +68840,10 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" } ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002506", diff --git a/pato-full.obo b/pato-full.obo index 43bd558a..0f699170 100644 --- a/pato-full.obo +++ b/pato-full.obo @@ -24603,12 +24603,11 @@ namespace: pato.ontology [Typedef] id: is_opposite_of name: is opposite of +name: is_opposite_of def: "x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x)." [] xref: RO:0002604 property_value: IAO:0000112 "'anterior end of organism' is-opposite-of 'posterior end of organism'" xsd:string property_value: IAO:0000112 "'increase in temperature' is-opposite-of 'decrease in temperature'" xsd:string -is_metadata_tag: true -is_class_level: true [Typedef] id: is_unit_of diff --git a/pato-full.owl b/pato-full.owl index dd15b2d5..1f222872 100644 --- a/pato-full.owl +++ b/pato-full.owl @@ -204,18 +204,7 @@ - - 'anterior end of organism' is-opposite-of 'posterior end of organism' - 'increase in temperature' is-opposite-of 'decrease in temperature' - x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). - RO:0002604 - quality - is_opposite_of - true - true - is_opposite_of - is opposite of - + @@ -2365,6 +2354,12 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + @@ -11550,9 +11545,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely. - quality PATO:0000299 @@ -11572,8 +11572,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely. - quality fixed PATO:0000300 @@ -11628,8 +11633,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A speed which is relatively high. - high speed quality fast speed @@ -11662,8 +11672,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A speed which is relatively low. - slow slow speed quality @@ -11717,8 +11732,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An age which is relatively high. - quality PATO:0000308 @@ -11737,8 +11757,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An age which is relatively low. - quality PATO:0000309 @@ -12016,8 +12041,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color brightness which is relatively low. - dark quality PATO:0000327 @@ -12037,8 +12067,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color saturation which is of low purity. - pale quality dull @@ -12079,8 +12114,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency. - quality PATO:0000330 @@ -12101,8 +12141,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color. - quality PATO:0000331 @@ -12172,8 +12217,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color quality inhering in a bearer by virtue of the bearer's having color. - PATO:0000332 quality pigmented @@ -12281,9 +12331,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A compatibility quality inhering in a bearer by virtue of the bearer's being capable of harmonious coexistence. - quality PATO:0000344 @@ -12304,8 +12359,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A compatibility quality inhering in a bearer by virtue of the bearer's being incapable of harmonious coexistence. - quality PATO:0000345 @@ -12535,8 +12595,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point. - quality PATO:0000365 @@ -12615,8 +12680,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point. - quality PATO:0000370 @@ -12680,8 +12750,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A distance which is greater relative to the normal or average. - quality long distance PATO:0000374 @@ -12714,8 +12789,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A distance which is lesser relative to the normal or average. - quality short distance PATO:0000375 @@ -12792,8 +12872,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A frequency which is relatively high. - high frequency quality frequent @@ -12827,8 +12912,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A frequency which is relatively low. - low frequency quality infrequent @@ -12924,8 +13014,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A hardness quality of being rigid and resistant to pressure. - quality firm impenetrable @@ -12961,8 +13056,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A hardness quality of giving little resistance to pressure. - quality PATO:0000387 @@ -12994,8 +13094,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course. - quality PATO:0000389 @@ -13179,9 +13284,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A branchiness quality inhering in a bearer by virtue of the bearer's having branches. - ramified ramiform quality @@ -13225,8 +13335,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals). - PATO:0001363 spiral quality @@ -13426,8 +13541,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches. - quality PATO:0000414 @@ -13448,8 +13568,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals). - quality PATO:0000415 @@ -13534,8 +13659,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth. - quality PATO:0000422 @@ -13555,8 +13685,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth. - quality PATO:0000423 @@ -13609,8 +13744,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly. - quality PATO:0000427 @@ -13631,8 +13771,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances. - quality PATO:0000428 @@ -13768,8 +13913,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation. - uniform quality constant @@ -13801,8 +13951,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement. - quality PATO:0000440 @@ -14083,8 +14238,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's deviation from normal or average. - quality aberrant atypia @@ -14109,8 +14269,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average. - quality average PATO:0000461 @@ -14132,6 +14297,12 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + @@ -14146,7 +14317,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality denoting the lack of an entity. - PATO:0001996 absence absent from organism @@ -14171,8 +14341,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of being clearly visible. - quality distinct PATO:0000463 @@ -14193,8 +14368,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of not being clearly visible. - quality faint PATO:0000464 @@ -14237,8 +14417,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's existence. - quality present in organism PATO:0000467 @@ -14292,8 +14477,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An amount which is relatively high. - PATO:0000420 PATO:0000650 increased number @@ -14495,9 +14685,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent. - responsive quality PATO:0000487 @@ -14519,8 +14714,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent. - unresponsive quality PATO:0000488 @@ -14653,8 +14853,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration quality of a process which is relatively high. - PATO:0000715 high time increased period @@ -14692,8 +14897,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration quality of a process which is relatively low. - PATO:0000716 decreased period decreased time @@ -14795,8 +15005,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm. - quality PATO:0000504 @@ -14815,8 +15030,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm. - quality PATO:0000505 @@ -14912,8 +15132,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus. - insensitive quality resistant @@ -14970,8 +15195,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's having sensitivity toward an external stimulus. - sensitive quality PATO:0000516 @@ -15312,9 +15542,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity. - quality photoresistant PATO:0000546 @@ -15335,8 +15570,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's exhibiting photosensitivity. - quality PATO:0000547 @@ -15601,8 +15841,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A height which is relatively low. - quality short PATO:0000569 @@ -15634,8 +15879,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A height which is relatively high. - quality tall PATO:0000570 @@ -15689,8 +15939,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A length quality which is relatively large. - long quality PATO:0000573 @@ -15722,8 +15977,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A length quality which is relatively small. - short quality shortened @@ -15832,8 +16092,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A weight which is relatively high. - heavy high weight quality @@ -15866,8 +16131,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A weight which is relatively low. - light weight low weight quality @@ -15888,8 +16158,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ). - hypertrophy quality PATO:0000584 @@ -15910,8 +16185,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ). - PATO:0000412 shrunken quality @@ -15945,8 +16225,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A size quality which is relatively high. - PATO:0001202 quality big @@ -15983,8 +16268,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A size quality which is relatively low. - hypoplasia underdeveloped quality @@ -16062,8 +16352,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A thickness which is relatively high. - high thickness stout thickened @@ -16099,8 +16394,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A thickness which is relatively low. - low thickness quality slender @@ -16157,8 +16457,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A volume which is relatively high. - high volume quality large volume @@ -16192,8 +16497,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A volume which is relatively low. - low volume quality small volume @@ -16249,8 +16559,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A width which is relatively small. - quality narrow PATO:0000599 @@ -16282,8 +16597,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A width which is relatively large. - quality broad wide @@ -16384,9 +16704,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view. - quality blocked PATO:0000608 @@ -16425,8 +16750,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view. - quality PATO:0000610 @@ -16467,8 +16797,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation. - quality PATO:0000613 @@ -16487,8 +16822,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A pattern where all the repeated elements are oriented in the same direction. - quality PATO:0000614 @@ -16590,8 +16930,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being overfilled. - quality PATO:0000619 @@ -16874,8 +17219,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled. - quality PATO:0000633 @@ -16992,10 +17342,15 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process. - degeneration quality PATO:0000639 @@ -17049,8 +17404,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity. - fused fused to quality @@ -17096,8 +17456,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells. - PATO:0000943 hyperplasia quality @@ -17121,8 +17486,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue. - PATO:0000942 hypoplasia quality @@ -17226,8 +17596,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity. - unfused quality PATO:0000651 @@ -17391,8 +17766,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color brightness which is relatively high. - light quality PATO:0000665 @@ -17652,8 +18032,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase. - quality PATO:0000688 @@ -17672,8 +18057,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent. - PATO:0000429 uninterrupted quality @@ -17694,8 +18084,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions. - PATO:0000426 interrupted quality @@ -17781,8 +18176,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase. - quality PATO:0000695 @@ -17845,8 +18245,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A texture quality inhering in a bearer by virtue of the bearer's irregular surface. - PATO:0001616 coarse quality @@ -17868,8 +18273,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities. - quality PATO:0000701 @@ -17945,8 +18355,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A threshold which is relatively high. - PATO:0000709 high threshold quality @@ -17991,8 +18406,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A threshold which is relatively low. - PATO:0000707 low threshold quality @@ -18558,9 +18978,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A balance quality inhering in a bearer by virtue of the bearer's having balance. - quality PATO:0000757 @@ -18579,8 +19004,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A balance quality inhering in a bearer by virtue of the bearer's lacking balance. - quality PATO:0000758 @@ -18637,8 +19067,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity. - hyperactive quality PATO:0000760 @@ -18670,8 +19105,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity. - hypoactive quality PATO:0000761 @@ -18818,9 +19258,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement. - quality PATO:0000769 @@ -18840,8 +19285,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement. - quality PATO:0000770 @@ -20179,9 +20629,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction. - quality PATO:0000888 @@ -20212,9 +20667,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male fertility quality inhering in a male by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. - quality male infertile PATO:0000890 @@ -20235,8 +20695,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. - quality PATO:0000891 @@ -20256,8 +20721,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. - quality female infertile PATO:0000892 @@ -20492,8 +20962,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A rate which is relatively low. - slow rate quality PATO:0000911 @@ -20526,8 +21001,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A rate which is relatively high. - fast rate high rate quality @@ -20861,9 +21341,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking organisation. - quality PATO:0000937 @@ -20883,8 +21368,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation. - quality PATO:0000938 @@ -21201,9 +21691,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. - quality PATO:0000955 @@ -21223,8 +21718,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. - quality PATO:0000956 @@ -21318,8 +21818,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy. - non-transparent quality clouding @@ -21342,8 +21847,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A optical quality inhering in a bearer by virtue of the bearer's lacking opacity. - clear hyaline quality @@ -21607,9 +22117,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion). - quality porous PATO:0000982 @@ -21630,8 +22145,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). - quality PATO:0000983 @@ -21651,9 +22171,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices. - quality PATO:0000984 @@ -21673,8 +22198,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices. - quality PATO:0000985 @@ -22491,8 +23021,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in an entity by virtue of the bearer's propensity to resist an external stimulus. - susceptibility quality PATO:0001043 @@ -22536,8 +23071,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus. - resistance quality PATO:0001046 @@ -23760,9 +24300,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus. - susceptible quality PATO:0001152 @@ -23784,8 +24329,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus. - insusceptible quality PATO:0001153 @@ -23807,8 +24357,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width. - quality PATO:0001154 @@ -23934,8 +24489,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A concentration which is higher relative to the normal or average. - high concentration quality PATO:0001162 @@ -23968,8 +24528,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A concentration which is lower relative to the normal or average. - low concentration quality PATO:0001163 @@ -24032,9 +24597,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired. - quality PATO:0001167 @@ -24053,8 +24623,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled. - quality PATO:0001168 @@ -24094,9 +24669,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way. - quality PATO:0001171 @@ -24117,8 +24697,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way. - quality PATO:0001172 @@ -24431,8 +25016,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent. - hyperresponsive increased responsivity quality @@ -24489,8 +25079,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent. - decreased responsivity hyporesponsive quality @@ -24694,8 +25289,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex. - serrate quality PATO:0001206 @@ -24945,8 +25545,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change. - variable quality PATO:0001227 @@ -24978,8 +25583,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color saturation which is of high purity. - bright quality vivid @@ -25042,8 +25652,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the back or upper surface of an organism relative to another entity. - dorsal posterior_to (human torso) superior_to (human head) @@ -25066,8 +25681,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity. - distal quality PATO:0001234 @@ -26464,8 +27084,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A temperature which is relatively high. - PATO:0000678 high temperature hot @@ -26499,8 +27124,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A temperature which is relatively low. - PATO:0000677 cold low temperature @@ -26534,8 +27164,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of temperature which is relatively low. - low variability of temperature quality PATO:0001307 @@ -26567,8 +27202,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of temperature which is relatively high. - high variability of temperature quality PATO:0001308 @@ -26643,8 +27283,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration of temperature which is lesser relative to the normal or average enduring or continuing in time. - quality PATO:0001311 @@ -26675,8 +27320,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time. - high duration of temperature quality PATO:0001312 @@ -26696,8 +27346,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature. - quality PATO:0001313 @@ -26716,8 +27371,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature. - quality PATO:0001314 @@ -26793,9 +27453,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli. - quality PATO:0001318 @@ -26816,8 +27481,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli. - quality PATO:0001319 @@ -27546,8 +28216,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere. - quality PATO:0001355 @@ -27690,9 +28365,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed. - quality PATO:0001362 @@ -28674,8 +29354,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having distinct structure. - quality PATO:0001411 @@ -28694,8 +29379,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure. - quality PATO:0001412 @@ -28774,8 +29464,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration which has regular start and/or end times. - quality PATO:0001416 @@ -28794,8 +29489,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times. - quality PATO:0001417 @@ -29557,9 +30257,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's dependence on oxygen. - quality PATO:0001455 @@ -29579,8 +30284,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's independence on oxygen. - quality PATO:0001456 @@ -29643,8 +30353,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen. - quality PATO:0001459 @@ -29664,8 +30379,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen. - quality PATO:0001460 @@ -29917,8 +30637,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A depth which is relatively low. - PATO:0001692 low depth shallow @@ -29993,8 +30718,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A position which is relatively high. - quality high position PATO:0001475 @@ -30026,8 +30756,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A positional which is relatively low. - quality low position PATO:0001476 @@ -30215,8 +30950,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together. - PATO:0001840 compact compressed @@ -30365,7 +31105,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001493 @@ -30379,7 +31124,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001494 @@ -30515,8 +31265,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development. - quality underdeveloped PATO:0001501 @@ -30691,8 +31446,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A functionality quality held by the bearer when the latter is able to perform a regular function(s). - quality PATO:0001510 @@ -30712,8 +31472,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s). - PATO:0001640 disfunctional functional failure @@ -31226,9 +31991,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid. - soluble quality PATO:0001537 @@ -31250,8 +32020,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A solubility quality inhering in a substance by virtue of the bearer's inability of a substance to dissolve in a liquid. - insoluble quality PATO:0001538 @@ -31371,8 +32146,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking. - bendy quality PATO:0001544 @@ -31393,8 +32173,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking. - stiff quality stiffness @@ -31489,8 +32274,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity toward an external stimulus which is higher than normal/average. - high sensitivity toward increased sensitivity quality @@ -31525,8 +32315,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity toward an external stimulus which is lower than normal/average. - decreased sensitivity low sensitivity toward quality @@ -31561,8 +32356,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of a process which is higher than normal or average. - high sensitivity of occurrent increased sensitivity of occurrent quality @@ -31596,8 +32396,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of a process which is lower than normal or average. - decreased sensitivity of occurrent low sensitivity of occurrent quality @@ -31631,8 +32436,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of occurrent to oxygen which is higher than normal or average. - high sensitivity of occurrent to oxygen quality PATO:0001553 @@ -31665,8 +32475,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of a process to oxygen which is lower than normal or average. - low sensitivity of occurrent to oxygen quality PATO:0001554 @@ -31842,8 +32657,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mass which is lower than normal or average. - PATO:0000579 low mass small mass @@ -31877,8 +32697,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mass which is higher than normal or average. - PATO:0000578 high mass large mass @@ -31929,9 +32754,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up. - PATO:0001513 diffuse scattered @@ -31954,8 +32784,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up. - quality PATO:0001567 @@ -32096,8 +32931,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A pressure which is relatively low. - low pressure quality PATO:0001575 @@ -32129,8 +32969,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A pressure which is relatively high. - high pressure quality PATO:0001576 @@ -32162,8 +33007,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A permeability which is relatively high. - high permeability quality PATO:0001577 @@ -32196,8 +33046,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A permeability which is relatively low. - low permeability quality PATO:0001578 @@ -32251,8 +33106,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A contractility which is relatively high. - high contractility quality PATO:0001580 @@ -32285,8 +33145,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A contractility which is relatively low. - low contractility quality PATO:0001581 @@ -32338,8 +33203,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability which is relatively low. - low variability quality PATO:0001583 @@ -32371,8 +33241,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability which is relatively high. - high variability quality PATO:0001584 @@ -32451,8 +33326,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of rate which is relatively high. - high variability of rate quality PATO:0001587 @@ -32484,8 +33364,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of rate which is relatively low. - low variability of rate quality PATO:0001588 @@ -32577,8 +33462,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A curvature which is relatively high. - quality PATO:0001592 @@ -32609,8 +33499,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A curvature which is relatively low. - quality PATO:0001593 @@ -32680,8 +33575,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A depth quality which is relatively high. - PATO:0001666 deep quality @@ -32838,8 +33738,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A life span which is relatively high. - high life span quality PATO:0001603 @@ -32870,8 +33775,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A life span which is relatively low. - low life span quality PATO:0001604 @@ -33037,8 +33947,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of color which is relatively high. - high variability of color quality PATO:0001612 @@ -33070,8 +33985,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of color which is relatively low. - low variability of color quality PATO:0001613 @@ -33091,8 +34011,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color. - quality PATO:0001614 @@ -33111,8 +34036,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour. - quality PATO:0001615 @@ -33174,8 +34104,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tonicity which is relatively high. - high tonicity quality PATO:0001618 @@ -33208,8 +34143,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tonicity which is relatively low. - low tonicity quality PATO:0001619 @@ -33262,8 +34202,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A turgor which is relatively low. - low turgor quality PATO:0001621 @@ -33296,8 +34241,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A turgor which is relatively high. - high turgor quality PATO:0001622 @@ -33352,8 +34302,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s). - PATO:0001556 PATO:0001568 PATO:0001641 @@ -33396,8 +34351,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s). - high functionality quality PATO:0001625 @@ -33439,8 +34399,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality. - quality adequate PATO:0001627 @@ -33460,8 +34425,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality. - quality inadequate PATO:0001628 @@ -33598,9 +34568,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being essential or indispensable. - quality PATO:0001635 @@ -33619,8 +34594,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable. - quality PATO:0001636 @@ -33658,8 +34638,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable. - quality PATO:0001638 @@ -33678,8 +34663,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable. - quality PATO:0001639 @@ -33861,8 +34851,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A resistance to a stimulus which is relatively high. - high resistance to increased resistance quality @@ -33897,8 +34892,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A resistance to a stimulus which is relatively low. - decreased resistance low resistance to quality @@ -33947,8 +34947,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity. - aligned quality aligned to @@ -33970,8 +34975,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity. - misaligned unaligned with quality @@ -34026,8 +35036,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A osmolarity which is relatively low. - low osmolarity quality PATO:0001656 @@ -34060,8 +35075,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A osmolarity which is relatively high. - high osmolarity quality PATO:0001657 @@ -34196,8 +35216,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A solubility which is relatively high. - high solubility quality PATO:0001663 @@ -34231,8 +35256,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A solubility which is relatively low. - low solubility quality PATO:0001664 @@ -34344,8 +35374,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A susceptibility toward an external stimulus which is higher than normal/average. - high susceptibility toward increased susceptibility quality @@ -34380,8 +35415,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A susceptibility toward an external stimulus which is lower than normal/average. - decreased susceptibility low susceptibility toward quality @@ -34416,8 +35456,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A distribution which is relatively high. - high distribution quality PATO:0001671 @@ -34449,8 +35494,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A distribution which is relatively low. - low distribution quality PATO:0001672 @@ -34524,8 +35574,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An efficiency which is relatively low. - low efficiency quality PATO:0001675 @@ -34557,8 +35612,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An efficiency which is relatively high. - high efficiency quality PATO:0001676 @@ -34578,9 +35638,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An efficiency quality inhering in a bearer by virtue of the bearer's lacking efficiency. - quality PATO:0001677 @@ -34599,8 +35664,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency. - quality PATO:0001678 @@ -34713,8 +35783,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A magnetism which is relatively high. - high magnetism quality PATO:0001683 @@ -34747,8 +35822,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A magnetism which is relatively low. - low magnetism quality PATO:0001684 @@ -34769,9 +35849,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism. - quality PATO:0001685 @@ -34791,8 +35876,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A magnetic quality inhering in a bearer by virtue of the bearer's inability to exert magnitism. - quality PATO:0001686 @@ -34843,8 +35933,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elevation which is relatively high. - high elevation quality elevated @@ -34877,8 +35972,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elevation which is relatively low. - low elevation quality PATO:0001689 @@ -34898,9 +35998,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted. - quality PATO:0001690 @@ -34921,8 +36026,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted. - quality PATO:0001691 @@ -34965,8 +36075,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A viscosity which relatively high. - high viscosity quality PATO:0001693 @@ -34999,8 +36114,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A viscosity which relatively low. - low viscosity quality PATO:0001694 @@ -35033,8 +36153,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fecundity which is relatively high. - high fecundity quality PATO:0001695 @@ -35067,8 +36192,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fecundity which is relatively low. - low fecundity quality PATO:0001696 @@ -35101,8 +36231,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A photosensitivity which is relatively low. - low photosensitivity quality PATO:0001697 @@ -35136,8 +36271,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A photosensitivity which is relatively high. - high photosensitivity quality PATO:0001698 @@ -35159,8 +36299,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sleep pattern which has regular start and/or end times. - quality PATO:0001699 @@ -35179,8 +36324,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sleep pattern which has irregular start and/or end times. - quality PATO:0001700 @@ -35199,8 +36349,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development. - quality PATO:0001701 @@ -35299,9 +36454,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's disposition to lack activity. - quality PATO:0001706 @@ -35321,8 +36481,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity. - quality PATO:0001707 @@ -35433,8 +36598,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A perimeter which is relatively high. - quality PATO:0001712 @@ -35465,8 +36635,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A perimeter which is relatively low. - quality PATO:0001713 @@ -35497,8 +36672,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A diameter which is relatively large. - quality PATO:0001714 @@ -35529,8 +36709,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A diameter which is relatively small. - quality PATO:0001715 @@ -35549,8 +36734,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking. - quality resilient strong @@ -35694,8 +36884,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female receptivity which is relatively high. - high female receptivity quality PATO:0001723 @@ -35728,8 +36923,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female receptivity which is relatively low. - low female receptivity quality PATO:0001724 @@ -35762,8 +36962,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male receptivity which is relatively high. - high male receptivity quality PATO:0001725 @@ -35796,8 +37001,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male receptivity which is relatively low. - low male receptivity quality PATO:0001726 @@ -36135,8 +37345,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A radioactivity which is relatively low. - high radioactivity quality PATO:0001742 @@ -36168,8 +37383,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A radioactivity which is relatively high. - low radioactivity quality PATO:0001743 @@ -36290,8 +37510,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth. - hypoplastic growth pedomorphic growth quality @@ -36350,8 +37575,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth. - hyperplastic growth quality PATO:0001752 @@ -36513,7 +37743,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001760 @@ -36527,7 +37762,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001761 @@ -36541,7 +37781,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001762 @@ -36555,7 +37800,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001763 @@ -36581,8 +37831,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An age which is high relative to the normal or average. - high age quality PATO:0001764 @@ -36614,8 +37869,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An age which is low relative to the normal or average. - low age quality PATO:0001765 @@ -36838,8 +38098,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A flexibility which is relatively high. - high flexibility quality PATO:0001776 @@ -36872,8 +38137,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A flexibility which is relatively low. - low flexibility quality PATO:0001777 @@ -36906,8 +38176,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A strength which is relatively high. - high strength quality PATO:0001778 @@ -36939,8 +38214,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A strength which is relatively low. - weak quality PATO:0001779 @@ -37012,8 +38292,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An intensity which is relatively high. - high intensity quality PATO:0001782 @@ -37045,8 +38330,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An intensity which is relatively low. - low intensity quality PATO:0001783 @@ -37169,8 +38459,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A density which is higher relative to the normal or average. - high density quality PATO:0001788 @@ -37223,8 +38518,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A density which is lower relative to the normal or average. - low density quality PATO:0001790 @@ -37338,8 +38638,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coiling which is relatively high. - high coiling quality PATO:0001795 @@ -37372,8 +38677,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coiling which is relatively low. - low coiling quality PATO:0001796 @@ -37612,8 +38922,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity to irradiation which is relatively low. - low sensitivity to irradiation quality PATO:0001807 @@ -37646,8 +38961,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity to irradiation which is relatively high. - high sensitivity to irradiation quality PATO:0001808 @@ -37811,8 +39131,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fatigability which is relatively high. - high fatigability quality PATO:0001816 @@ -37834,8 +39159,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fatigability which is relatively low. - low fatigability quality PATO:0001817 @@ -37856,8 +39186,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time. - quality PATO:0001818 @@ -37909,8 +39244,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having no opening. - unperforated quality PATO:0001821 @@ -37952,9 +39292,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid. - quality PATO:0001823 @@ -37974,8 +39319,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid. - quality PATO:0001824 @@ -38007,8 +39357,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wetness quality that is relatively high. - quality PATO:0001825 @@ -38039,8 +39394,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wetness quality that is relatively low. - low wetness quality PATO:0001826 @@ -38129,8 +39489,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female fertility which is relatively low. - low female fertility quality PATO:0001830 @@ -38163,8 +39528,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female fertility which is relatively high. - high female fertility quality PATO:0001831 @@ -38197,8 +39567,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male fertility which is relatively high. - high male fertility quality PATO:0001832 @@ -38231,8 +39606,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male fertility which is relatively low. - low male fertility quality PATO:0001833 @@ -38265,8 +39645,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fertility which is relatively low. - low fertility quality PATO:0001834 @@ -38299,8 +39684,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fertility which is relatively high. - high fertility quality PATO:0001835 @@ -38363,8 +39753,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A flow that is relatively low. - low flow quality PATO:0001838 @@ -38396,8 +39791,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fluid flow that is relatively high. - high flow quality PATO:0001839 @@ -38481,8 +39881,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An acidity which is relatively low. - low acidity quality PATO:0001843 @@ -38514,8 +39919,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An acidity which is relatively high. - high acidity quality PATO:0001844 @@ -38793,8 +40203,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality in a bearer by virtue of the bearer's curving inward. - quality PATO:0001857 @@ -38845,8 +40260,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coordination which is relatively high. - high coordination quality PATO:0001859 @@ -38879,8 +40299,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coordination which is relatively low. - low coordination quality PATO:0001860 @@ -38901,9 +40326,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve. - fascicled quality PATO:0001861 @@ -38945,8 +40375,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration. - quality PATO:0001863 @@ -39403,9 +40838,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water. - quality PATO:0001884 @@ -39425,8 +40865,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water. - quality PATO:0001885 @@ -39446,8 +40891,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water. - quality PATO:0001886 @@ -39467,8 +40917,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water. - quality PATO:0001887 @@ -39595,8 +41050,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An odor quality of having decreased odor. - quality PATO:0001892 @@ -39627,8 +41087,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An odor quality of having increased odor. - quality PATO:0001893 @@ -39679,8 +41144,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. - quality PATO:0001896 @@ -39699,8 +41169,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structure quality inhering in a bearer by virtue of the bearer's having a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. - quality PATO:0001897 @@ -39732,8 +41207,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A circumference which is relatively high. - quality PATO:0001898 @@ -39764,8 +41244,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A circumference which is relatively low. - quality PATO:0001899 @@ -39784,8 +41269,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north. - quality PATO:0001900 @@ -39804,8 +41294,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south. - quality PATO:0001901 @@ -40303,8 +41798,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fluorescence which is higher than normal. - high fluorescence quality PATO:0001926 @@ -40336,8 +41836,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fluorescence which is lower than normal. - low fluorescence quality PATO:0001927 @@ -40403,8 +41908,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape. - quality PATO:0001930 @@ -40423,8 +41933,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape. - quality PATO:0001931 @@ -40945,8 +42460,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of size which is relatively low. - low variability of size quality PATO:0001957 @@ -40978,8 +42498,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of size which is relatively high. - high variability of size quality PATO:0001958 @@ -40999,8 +42524,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated. - quality PATO:0001959 @@ -41306,8 +42836,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex. - quality PATO:0001975 @@ -41737,8 +43272,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An amount which is relatively low. - PATO:0000419 PATO:0000468 decreased number @@ -41844,8 +43384,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. - PATO:0001569 decreased number of has decreased number of @@ -41881,8 +43426,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. - PATO:0001560 has extra parts of has increased number of @@ -41987,6 +43537,12 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + @@ -41994,7 +43550,6 @@ Association is weaker than correlation or proportionality. These relations may b A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave. - Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png quality PATO:0002007 @@ -42021,8 +43576,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave. - Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png quality PATO:0002008 @@ -42181,7 +43741,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + high magnitude quality PATO:0002017 @@ -42194,7 +43759,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + low magnitude quality PATO:0002018 @@ -42344,8 +43914,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time. - george gkoutos 2008-12-18T12:49:19Z quality @@ -42403,8 +43978,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An osmolality which is relatively low. - george 2009-01-27T10:55:33Z low osmolality @@ -42439,8 +44019,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An osmolality which is relatively high. - george 2009-01-27T10:56:19Z high osmolality @@ -42640,8 +44225,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer whose structure which does not deteriorate. - george 2009-02-03T11:14:54Z not degenerate @@ -42663,8 +44253,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces. - quality PATO:0002039 @@ -42683,8 +44278,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface. - Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx quality PATO:0002040 @@ -42736,8 +44336,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An anterior-posterior diameter quality which is relatively small. - low anterior-posterior diameter quality PATO:0002042 @@ -42769,8 +44374,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An anterior-posterior diameter quality which is relatively large. - high anterior-posterior diameter quality PATO:0002043 @@ -42962,8 +44572,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An occurrence which is relatively high. - George Gkoutos 2009-03-26T11:10:11Z increased incidence @@ -42996,8 +44611,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An occurrence which is relatively low. - George Gkoutos 2009-03-26T11:12:35Z decreased incidence @@ -43074,8 +44694,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fragility which is relatively high. - George Gkoutos 2009-03-26T04:01:37Z quality @@ -43109,8 +44734,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fragility which is relatively low. - George Gkoutos 2009-03-26T04:02:14Z quality @@ -43144,8 +44774,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An area which is relatively high. - George Gkoutos 2009-03-30T04:11:43Z quality @@ -43178,8 +44813,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An area which is relatively low. - George Gkoutos 2009-03-30T04:12:11Z quality @@ -43378,8 +45018,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration. - George Gkoutos 2009-07-01T02:31:53Z quality @@ -43401,8 +45046,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration. - George Gkoutos 2009-07-01T02:33:41Z quality @@ -43460,8 +45110,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An affinity which is relatively high. - George Gkoutos 2009-09-18T01:29:42Z quality @@ -43496,8 +45151,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An affinity which is relatively low. - George Gkoutos 2009-09-18T01:30:11Z quality @@ -43556,8 +45216,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An avidity which is relatively high. - George Gkoutos 2009-09-18T01:45:56Z quality @@ -43592,8 +45257,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An avidity which is relatively low. - George Gkoutos 2009-09-18T01:45:59Z quality @@ -44102,8 +45772,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type. - george 2009-10-05T12:58:54Z quality @@ -44125,8 +45800,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A cellular quality inhering in a bearer by virtue of having not yet acquired a special structure of function. - george 2009-10-05T12:59:21Z quality @@ -44395,8 +46075,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes. - george 2009-10-05T03:37:05Z PATO:0000649 @@ -44999,9 +46684,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer being suitable for use as food. - george 2009-10-26T01:21:34Z quality @@ -45024,8 +46714,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food. - george 2009-10-26T01:22:27Z quality @@ -45109,8 +46804,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A radiopacity that is relatively high. - george 2009-10-30T03:30:39Z quality @@ -45144,8 +46844,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A radiopacity that is relatively low. - george 2009-10-30T03:31:31Z quality @@ -45202,8 +46907,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A virulence that is relatively low. - george 2009-10-30T05:05:02Z attenuated @@ -45237,8 +46947,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A virulence that is relatively high. - george 2009-10-30T05:13:10Z quality @@ -46149,9 +47864,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. - George Gkoutos 2010-03-10T03:25:59Z quality @@ -46172,8 +47892,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic. - George Gkoutos 2010-03-10T03:26:41Z quality @@ -46239,9 +47964,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge. - George Gkoutos 2010-03-10T03:30:06Z quality @@ -46262,8 +47992,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge. - George Gkoutos 2010-03-10T03:30:39Z quality @@ -46795,9 +48530,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group. - george 2010-07-09T01:50:14Z quality @@ -46830,8 +48570,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups. - george 2010-07-09T01:51:52Z hyperphosphorylated @@ -46865,8 +48610,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully. - george 2010-07-09T01:54:22Z hypophosporylated @@ -47379,8 +49129,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A force which relative high. - george 2010-08-04T11:12:20Z increased force amplitude @@ -47414,8 +49169,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A force which is relative low. - george 2010-08-04T11:13:13Z decreased force amplitude @@ -47465,9 +49225,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A degree of pigmentation quality inhering in a bearer by virtue of the bearer's having substances produced by living organisms that have a color resulting from selective color absorption. - george 2010-08-09T04:16:49Z quality @@ -47489,8 +49254,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A degree of pigmentation quality inhering in a bearer by virtue of the bearer's lacking substances produced by living organisms that have a color resulting from selective color absorption. - george 2010-08-09T04:17:04Z depigmented @@ -47525,8 +49295,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A degree of pigmentation quality that is relatively high. - george 2010-08-09T04:17:19Z hyperpigmented @@ -47561,8 +49336,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A degree of pigmentation quality that is relative low. - george 2010-08-09T04:17:37Z hypopigmented @@ -47831,8 +49611,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group. - george 2010-09-16T09:04:21Z quality @@ -47975,8 +49760,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner. - george 2010-10-26T02:00:20Z accumulated @@ -47999,8 +49789,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An accumulation which is relative low. - george 2010-10-26T02:04:45Z quality @@ -48244,8 +50039,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mobility which is relative high. - george 2011-03-09T09:16:03Z quality @@ -48278,8 +50078,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mobility which is relative low. - george 2011-03-09T09:16:47Z quality @@ -48322,8 +50127,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity. - george 2011-03-10T09:07:57Z quality @@ -48344,8 +50154,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity. - george 2011-03-10T09:08:37Z quality @@ -48378,8 +50193,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elasticity which is relatively high. - George Gkoutos 2011-03-30T11:50:21Z quality @@ -48412,8 +50232,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elasticity which is relatively low. - George Gkoutos 2011-03-30T11:50:39Z quality @@ -48609,8 +50434,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A cellular motility which is lower relative to the normal or average. - quality PATO:0002297 @@ -48641,8 +50471,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A cellular motility which is higher relative to the normal or average. - quality PATO:0002298 @@ -48696,6 +50531,12 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + @@ -48703,7 +50544,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality that has a value that is increased compared to normal or average. - George Gkoutos 2011-06-16T06:39:43Z quality @@ -48734,6 +50574,12 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + @@ -48741,7 +50587,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality that has a value that is decreased compared to normal or average. - George Gkoutos 2011-06-16T06:40:15Z quality @@ -48773,8 +50618,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a process that has a value that is decreased compared to normal or average. - George Gkoutos 2011-06-16T06:50:59Z quality @@ -48806,8 +50656,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of an object that has a value that is decreased compared to normal or average. - George Gkoutos 2011-06-16T06:51:54Z quality @@ -48839,8 +50694,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a process that has a value that is increased compared to normal or average. - George Gkoutos 2011-06-16T06:53:08Z quality @@ -48872,8 +50732,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of an object that has a value that is increased compared to normal or average. - George Gkoutos 2011-06-16T06:54:01Z quality @@ -49230,7 +51095,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + George Gkoutos 2011-10-12T12:50:59Z quality @@ -49244,7 +51114,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + George Gkoutos 2011-10-12T12:51:19Z quality @@ -49370,8 +51245,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An angle which is relatively high. - George Gkoutos 2011-11-23T12:06:38Z quality @@ -49405,8 +51285,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An angle which is relatively low. - George Gkoutos 2011-11-23T12:06:54Z quality @@ -49470,8 +51355,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact. - gkoutos 2012-01-31T12:28:16Z quality @@ -49493,8 +51383,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact. - gkoutos 2012-01-31T12:28:57Z quality @@ -49528,8 +51423,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A adhesivity which is relatively high. - gkoutos 2012-01-31T12:32:43Z quality @@ -49562,8 +51462,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A adhesivity which is relatively low. - gkoutos 2012-01-31T12:42:22Z quality @@ -49982,8 +51887,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of an physical object that is currently realizing one of its functions. - gkoutos 2012-01-31T04:52:04Z quality @@ -50004,8 +51914,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a physical object that is currently realizing none of its functions. - gkoutos 2012-01-31T04:52:14Z quality @@ -50146,8 +52061,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tendency which is relatively high. - gkoutos 2012-03-16T06:31:57Z quality @@ -50182,8 +52102,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tendency which is relatively low. - gkoutos 2012-03-16T06:32:57Z quality @@ -50227,8 +52152,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width. - gkoutos 2012-04-18T06:31:29Z quality @@ -50480,8 +52410,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structure quality inhering in a bearer by virtue of the bearer's being filled with air. - gkoutos 2012-07-05T02:55:10Z air-filled @@ -50503,8 +52438,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structure quality inhering in a bearer by virtue of the bearer's being not filed with air. - gkoutos 2012-07-05T02:56:07Z quality @@ -50622,8 +52562,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A waxiness which is relatively high. - gkoutos 2012-07-05T03:18:03Z quality @@ -50656,8 +52601,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A waxiness which is relatively low. - gkoutos 2012-07-05T03:18:14Z quality @@ -50878,8 +52828,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus. - gkoutos 2012-11-15T05:32:07Z quality @@ -50913,8 +52868,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus. - gkoutos 2012-11-15T05:33:05Z quality @@ -51928,8 +53888,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures. - gkoutos 2013-01-29T10:59:42Z quality @@ -51950,8 +53915,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures. - gkoutos 2013-01-29T11:00:20Z quality @@ -52166,8 +54136,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed. - gkoutos 2013-04-08T08:43:31Z quality @@ -52569,8 +54544,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position. - gkoutos 2013-09-15T12:03:45Z quality @@ -52603,8 +54583,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position. - gkoutos 2013-09-15T12:05:06Z quality @@ -53015,8 +55000,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally. - gkoutos 2013-10-10T05:12:15Z anterodorsally directed @@ -53082,8 +55072,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distally. - gkoutos 2013-10-10T05:14:37Z distally directed @@ -53105,8 +55100,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally. - gkoutos 2013-10-10T05:15:24Z dorsally directed @@ -53304,8 +55304,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally. - gkoutos 2013-10-10T05:19:36Z posterodorsally directed @@ -53777,8 +55782,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally. - segerdel 2014-03-11T11:28:39Z antero-distal orientation @@ -53799,8 +55809,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally. - segerdel 2014-03-11T11:29:22Z postero-distal orientation @@ -54442,8 +56457,13 @@ height'). + + + + + + A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts. - wasila.dahdul 2014-09-25T15:11:47Z quality @@ -54464,8 +56484,13 @@ height'). + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities. - wasila.dahdul 2014-09-25T15:12:35Z quality @@ -54928,8 +56953,13 @@ height'). + + + + + + A decrease in the ability of a process to produce its output. - cjm quality PATO:0015003 @@ -54961,8 +56991,13 @@ height'). + + + + + + A increase in the ability of a process to produce its output. - cjm quality PATO:0015004 @@ -55106,8 +57141,13 @@ height'). + + + + + + An increase in humidity. - quality humid PATO:0015010 @@ -55139,8 +57179,13 @@ height'). + + + + + + An decrease in humidity. - quality PATO:0015011 @@ -55209,8 +57254,13 @@ height'). + + + + + + An increase in illumination. - quality illuminated PATO:0015014 @@ -55242,8 +57292,13 @@ height'). + + + + + + An decrease in illumination. - quality PATO:0015015 @@ -55395,8 +57450,13 @@ height'). + + + + + + An increase in combustibility. - combustible quality PATO:0015022 @@ -55422,8 +57482,13 @@ height'). + + + + + + An decrease in combustibility. - quality noncombustible PATO:0015023 @@ -55480,8 +57545,13 @@ height'). + + + + + + An decrease in porosity. - quality PATO:0015025 @@ -55564,8 +57634,13 @@ height'). + + + + + + A decrease in stability. - quality PATO:0015028 @@ -55707,9 +57782,14 @@ height'). + + + + + + A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration. - pbuttigieg 2015-09-01T16:18:57Z undrinkable @@ -55730,8 +57810,13 @@ height'). + + + + + + A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration. - pbuttigieg 2015-09-01T16:19:02Z drinkable @@ -58931,8 +61016,13 @@ height'). + + + + + + North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west. - Luke Slater 2017-12-22T14:16:43Z quality @@ -58953,8 +61043,13 @@ height'). + + + + + + East is one of the four cardinal directions or points of the compass. It is the opposite direction from west. - Luke Slater 2017-12-22T14:16:43Z quality @@ -58975,8 +61070,13 @@ height'). + + + + + + South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west. - Luke Slater 2017-12-22T14:16:43Z quality @@ -58997,8 +61097,13 @@ height'). + + + + + + West is one of the four cardinal directions or points of the compass. It is the opposite direction from east. - Luke Slater 2017-12-22T14:16:43Z quality @@ -59246,6 +61351,28 @@ This interpretation is *not* the same as an at-all-times relation + + + + is_opposite_of + x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). + quality + 'increase in temperature' is-opposite-of 'decrease in temperature' + 'anterior end of organism' is-opposite-of 'posterior end of organism' + is opposite of + is_opposite_of + is_opposite_of + RO:0002604 + + + + - - - - - @@ -4659,7 +4653,6 @@ Association is weaker than correlation or proportionality. These relations may b A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely. - quality PATO:0000299 @@ -4680,7 +4673,6 @@ Association is weaker than correlation or proportionality. These relations may b A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely. - quality fixed PATO:0000300 @@ -4725,7 +4717,6 @@ Association is weaker than correlation or proportionality. These relations may b A speed which is relatively high. - high speed quality fast speed @@ -4748,7 +4739,6 @@ Association is weaker than correlation or proportionality. These relations may b A speed which is relatively low. - slow slow speed quality @@ -4803,7 +4793,6 @@ Association is weaker than correlation or proportionality. These relations may b An age which is relatively high. - quality PATO:0000308 @@ -4823,7 +4812,6 @@ Association is weaker than correlation or proportionality. These relations may b An age which is relatively low. - quality PATO:0000309 @@ -5102,7 +5090,6 @@ Association is weaker than correlation or proportionality. These relations may b A color brightness which is relatively low. - dark quality PATO:0000327 @@ -5123,7 +5110,6 @@ Association is weaker than correlation or proportionality. These relations may b A color saturation which is of low purity. - pale quality dull @@ -5165,7 +5151,6 @@ Association is weaker than correlation or proportionality. These relations may b A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency. - quality PATO:0000330 @@ -5187,7 +5172,6 @@ Association is weaker than correlation or proportionality. These relations may b A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color. - quality PATO:0000331 @@ -5258,7 +5242,6 @@ Association is weaker than correlation or proportionality. These relations may b A color quality inhering in a bearer by virtue of the bearer's having color. - PATO:0000332 quality pigmented @@ -5368,7 +5351,6 @@ Association is weaker than correlation or proportionality. These relations may b A compatibility quality inhering in a bearer by virtue of the bearer's being capable of harmonious coexistence. - quality PATO:0000344 @@ -5390,7 +5372,6 @@ Association is weaker than correlation or proportionality. These relations may b A compatibility quality inhering in a bearer by virtue of the bearer's being incapable of harmonious coexistence. - quality PATO:0000345 @@ -5621,7 +5602,6 @@ Association is weaker than correlation or proportionality. These relations may b A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point. - quality PATO:0000365 @@ -5701,7 +5681,6 @@ Association is weaker than correlation or proportionality. These relations may b A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point. - quality PATO:0000370 @@ -5755,7 +5734,6 @@ Association is weaker than correlation or proportionality. These relations may b A distance which is greater relative to the normal or average. - quality long distance PATO:0000374 @@ -5778,7 +5756,6 @@ Association is weaker than correlation or proportionality. These relations may b A distance which is lesser relative to the normal or average. - quality short distance PATO:0000375 @@ -5845,7 +5822,6 @@ Association is weaker than correlation or proportionality. These relations may b A frequency which is relatively high. - high frequency quality frequent @@ -5869,7 +5845,6 @@ Association is weaker than correlation or proportionality. These relations may b A frequency which is relatively low. - low frequency quality infrequent @@ -5955,7 +5930,6 @@ Association is weaker than correlation or proportionality. These relations may b A hardness quality of being rigid and resistant to pressure. - quality firm impenetrable @@ -5981,7 +5955,6 @@ Association is weaker than correlation or proportionality. These relations may b A hardness quality of giving little resistance to pressure. - quality PATO:0000387 @@ -6014,7 +5987,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course. - quality PATO:0000389 @@ -6200,7 +6172,6 @@ Association is weaker than correlation or proportionality. These relations may b A branchiness quality inhering in a bearer by virtue of the bearer's having branches. - ramified ramiform quality @@ -6245,7 +6216,6 @@ Association is weaker than correlation or proportionality. These relations may b A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals). - PATO:0001363 spiral quality @@ -6446,7 +6416,6 @@ Association is weaker than correlation or proportionality. These relations may b A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches. - quality PATO:0000414 @@ -6468,7 +6437,6 @@ Association is weaker than correlation or proportionality. These relations may b A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals). - quality PATO:0000415 @@ -6554,7 +6522,6 @@ Association is weaker than correlation or proportionality. These relations may b A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth. - quality PATO:0000422 @@ -6575,7 +6542,6 @@ Association is weaker than correlation or proportionality. These relations may b A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth. - quality PATO:0000423 @@ -6629,7 +6595,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly. - quality PATO:0000427 @@ -6651,7 +6616,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances. - quality PATO:0000428 @@ -6788,7 +6752,6 @@ Association is weaker than correlation or proportionality. These relations may b A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation. - uniform quality constant @@ -6821,7 +6784,6 @@ Association is weaker than correlation or proportionality. These relations may b A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement. - quality PATO:0000440 @@ -7103,7 +7065,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's deviation from normal or average. - quality aberrant atypia @@ -7129,7 +7090,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average. - quality average PATO:0000461 @@ -7165,7 +7125,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality denoting the lack of an entity. - PATO:0001996 absence absent from organism @@ -7191,7 +7150,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of being clearly visible. - quality distinct PATO:0000463 @@ -7213,7 +7171,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of not being clearly visible. - quality faint PATO:0000464 @@ -7257,7 +7214,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's existence. - quality present in organism PATO:0000467 @@ -7301,7 +7257,6 @@ Association is weaker than correlation or proportionality. These relations may b An amount which is relatively high. - PATO:0000420 PATO:0000650 increased number @@ -7505,7 +7460,6 @@ Association is weaker than correlation or proportionality. These relations may b A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent. - responsive quality PATO:0000487 @@ -7528,7 +7482,6 @@ Association is weaker than correlation or proportionality. These relations may b A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent. - unresponsive quality PATO:0000488 @@ -7651,7 +7604,6 @@ Association is weaker than correlation or proportionality. These relations may b A duration quality of a process which is relatively high. - PATO:0000715 high time increased period @@ -7679,7 +7631,6 @@ Association is weaker than correlation or proportionality. These relations may b A duration quality of a process which is relatively low. - PATO:0000716 decreased period decreased time @@ -7782,7 +7733,6 @@ Association is weaker than correlation or proportionality. These relations may b A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm. - quality PATO:0000504 @@ -7802,7 +7752,6 @@ Association is weaker than correlation or proportionality. These relations may b A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm. - quality PATO:0000505 @@ -7899,7 +7848,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus. - insensitive quality resistant @@ -7957,7 +7905,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's having sensitivity toward an external stimulus. - sensitive quality PATO:0000516 @@ -8300,7 +8247,6 @@ Association is weaker than correlation or proportionality. These relations may b A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity. - quality photoresistant PATO:0000546 @@ -8322,7 +8268,6 @@ Association is weaker than correlation or proportionality. These relations may b A photosensitivity quality inhering in a bearer by virtue of the bearer's exhibiting photosensitivity. - quality PATO:0000547 @@ -8577,7 +8522,6 @@ Association is weaker than correlation or proportionality. These relations may b A height which is relatively low. - quality short PATO:0000569 @@ -8599,7 +8543,6 @@ Association is weaker than correlation or proportionality. These relations may b A height which is relatively high. - quality tall PATO:0000570 @@ -8643,7 +8586,6 @@ Association is weaker than correlation or proportionality. These relations may b A length quality which is relatively large. - long quality PATO:0000573 @@ -8665,7 +8607,6 @@ Association is weaker than correlation or proportionality. These relations may b A length quality which is relatively small. - short quality shortened @@ -8764,7 +8705,6 @@ Association is weaker than correlation or proportionality. These relations may b A weight which is relatively high. - heavy high weight quality @@ -8787,7 +8727,6 @@ Association is weaker than correlation or proportionality. These relations may b A weight which is relatively low. - light weight low weight quality @@ -8809,7 +8748,6 @@ Association is weaker than correlation or proportionality. These relations may b An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ). - hypertrophy quality PATO:0000584 @@ -8831,7 +8769,6 @@ Association is weaker than correlation or proportionality. These relations may b A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ). - PATO:0000412 shrunken quality @@ -8855,7 +8792,6 @@ Association is weaker than correlation or proportionality. These relations may b A size quality which is relatively high. - PATO:0001202 quality big @@ -8882,7 +8818,6 @@ Association is weaker than correlation or proportionality. These relations may b A size quality which is relatively low. - hypoplasia underdeveloped quality @@ -8950,7 +8885,6 @@ Association is weaker than correlation or proportionality. These relations may b A thickness which is relatively high. - high thickness stout thickened @@ -8976,7 +8910,6 @@ Association is weaker than correlation or proportionality. These relations may b A thickness which is relatively low. - low thickness quality slender @@ -9023,7 +8956,6 @@ Association is weaker than correlation or proportionality. These relations may b A volume which is relatively high. - high volume quality large volume @@ -9047,7 +8979,6 @@ Association is weaker than correlation or proportionality. These relations may b A volume which is relatively low. - low volume quality small volume @@ -9093,7 +9024,6 @@ Association is weaker than correlation or proportionality. These relations may b A width which is relatively small. - quality narrow PATO:0000599 @@ -9115,7 +9045,6 @@ Association is weaker than correlation or proportionality. These relations may b A width which is relatively large. - quality broad wide @@ -9218,7 +9147,6 @@ Association is weaker than correlation or proportionality. These relations may b A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view. - quality blocked PATO:0000608 @@ -9258,7 +9186,6 @@ Association is weaker than correlation or proportionality. These relations may b A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view. - quality PATO:0000610 @@ -9300,7 +9227,6 @@ Association is weaker than correlation or proportionality. These relations may b A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation. - quality PATO:0000613 @@ -9320,7 +9246,6 @@ Association is weaker than correlation or proportionality. These relations may b A pattern where all the repeated elements are oriented in the same direction. - quality PATO:0000614 @@ -9423,7 +9348,6 @@ Association is weaker than correlation or proportionality. These relations may b A positional quality inhering in a bearer by virtue of the bearer's being overfilled. - quality PATO:0000619 @@ -9707,7 +9631,6 @@ Association is weaker than correlation or proportionality. These relations may b A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled. - quality PATO:0000633 @@ -9827,7 +9750,6 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process. - degeneration quality PATO:0000639 @@ -9882,7 +9804,6 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity. - fused fused to quality @@ -9929,7 +9850,6 @@ Association is weaker than correlation or proportionality. These relations may b A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells. - PATO:0000943 hyperplasia quality @@ -9954,7 +9874,6 @@ Association is weaker than correlation or proportionality. These relations may b A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue. - PATO:0000942 hypoplasia quality @@ -10059,7 +9978,6 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity. - unfused quality PATO:0000651 @@ -10224,7 +10142,6 @@ Association is weaker than correlation or proportionality. These relations may b A color brightness which is relatively high. - light quality PATO:0000665 @@ -10485,7 +10402,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase. - quality PATO:0000688 @@ -10505,7 +10421,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent. - PATO:0000429 uninterrupted quality @@ -10527,7 +10442,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions. - PATO:0000426 interrupted quality @@ -10614,7 +10528,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase. - quality PATO:0000695 @@ -10678,7 +10591,6 @@ Association is weaker than correlation or proportionality. These relations may b A texture quality inhering in a bearer by virtue of the bearer's irregular surface. - PATO:0001616 coarse quality @@ -10701,7 +10613,6 @@ Association is weaker than correlation or proportionality. These relations may b A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities. - quality PATO:0000701 @@ -10767,7 +10678,6 @@ Association is weaker than correlation or proportionality. These relations may b A threshold which is relatively high. - PATO:0000709 high threshold quality @@ -10802,7 +10712,6 @@ Association is weaker than correlation or proportionality. These relations may b A threshold which is relatively low. - PATO:0000707 low threshold quality @@ -11370,7 +11279,6 @@ Association is weaker than correlation or proportionality. These relations may b A balance quality inhering in a bearer by virtue of the bearer's having balance. - quality PATO:0000757 @@ -11390,7 +11298,6 @@ Association is weaker than correlation or proportionality. These relations may b A balance quality inhering in a bearer by virtue of the bearer's lacking balance. - quality PATO:0000758 @@ -11437,7 +11344,6 @@ Association is weaker than correlation or proportionality. These relations may b A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity. - hyperactive quality PATO:0000760 @@ -11459,7 +11365,6 @@ Association is weaker than correlation or proportionality. These relations may b A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity. - hypoactive quality PATO:0000761 @@ -11608,7 +11513,6 @@ Association is weaker than correlation or proportionality. These relations may b A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement. - quality PATO:0000769 @@ -11629,7 +11533,6 @@ Association is weaker than correlation or proportionality. These relations may b A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement. - quality PATO:0000770 @@ -12969,7 +12872,6 @@ Association is weaker than correlation or proportionality. These relations may b A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction. - quality PATO:0000888 @@ -13002,7 +12904,6 @@ Association is weaker than correlation or proportionality. These relations may b A male fertility quality inhering in a male by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. - quality male infertile PATO:0000890 @@ -13024,7 +12925,6 @@ Association is weaker than correlation or proportionality. These relations may b A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. - quality PATO:0000891 @@ -13045,7 +12945,6 @@ Association is weaker than correlation or proportionality. These relations may b A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. - quality female infertile PATO:0000892 @@ -13270,7 +13169,6 @@ Association is weaker than correlation or proportionality. These relations may b A rate which is relatively low. - slow rate quality PATO:0000911 @@ -13293,7 +13191,6 @@ Association is weaker than correlation or proportionality. These relations may b A rate which is relatively high. - fast rate high rate quality @@ -13629,7 +13526,6 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's lacking organisation. - quality PATO:0000937 @@ -13650,7 +13546,6 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation. - quality PATO:0000938 @@ -13969,7 +13864,6 @@ Association is weaker than correlation or proportionality. These relations may b A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. - quality PATO:0000955 @@ -13990,7 +13884,6 @@ Association is weaker than correlation or proportionality. These relations may b A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. - quality PATO:0000956 @@ -14085,7 +13978,6 @@ Association is weaker than correlation or proportionality. These relations may b A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy. - non-transparent quality clouding @@ -14109,7 +14001,6 @@ Association is weaker than correlation or proportionality. These relations may b A optical quality inhering in a bearer by virtue of the bearer's lacking opacity. - clear hyaline quality @@ -14375,7 +14266,6 @@ Association is weaker than correlation or proportionality. These relations may b A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion). - quality porous PATO:0000982 @@ -14397,7 +14287,6 @@ Association is weaker than correlation or proportionality. These relations may b A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). - quality PATO:0000983 @@ -14419,7 +14308,6 @@ Association is weaker than correlation or proportionality. These relations may b A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices. - quality PATO:0000984 @@ -14440,7 +14328,6 @@ Association is weaker than correlation or proportionality. These relations may b A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices. - quality PATO:0000985 @@ -15258,7 +15145,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in an entity by virtue of the bearer's propensity to resist an external stimulus. - susceptibility quality PATO:0001043 @@ -15303,7 +15189,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus. - resistance quality PATO:0001046 @@ -16528,7 +16413,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus. - susceptible quality PATO:0001152 @@ -16551,7 +16435,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus. - insusceptible quality PATO:0001153 @@ -16574,7 +16457,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width. - quality PATO:0001154 @@ -16690,7 +16572,6 @@ Association is weaker than correlation or proportionality. These relations may b A concentration which is higher relative to the normal or average. - high concentration quality PATO:0001162 @@ -16713,7 +16594,6 @@ Association is weaker than correlation or proportionality. These relations may b A concentration which is lower relative to the normal or average. - low concentration quality PATO:0001163 @@ -16778,7 +16658,6 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired. - quality PATO:0001167 @@ -16798,7 +16677,6 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled. - quality PATO:0001168 @@ -16840,7 +16718,6 @@ Association is weaker than correlation or proportionality. These relations may b An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way. - quality PATO:0001171 @@ -16862,7 +16739,6 @@ Association is weaker than correlation or proportionality. These relations may b An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way. - quality PATO:0001172 @@ -17165,7 +17041,6 @@ Association is weaker than correlation or proportionality. These relations may b A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent. - hyperresponsive increased responsivity quality @@ -17212,7 +17087,6 @@ Association is weaker than correlation or proportionality. These relations may b A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent. - decreased responsivity hyporesponsive quality @@ -17417,7 +17291,6 @@ Association is weaker than correlation or proportionality. These relations may b A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex. - serrate quality PATO:0001206 @@ -17668,7 +17541,6 @@ Association is weaker than correlation or proportionality. These relations may b A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change. - variable quality PATO:0001227 @@ -17701,7 +17573,6 @@ Association is weaker than correlation or proportionality. These relations may b A color saturation which is of high purity. - bright quality vivid @@ -17765,7 +17636,6 @@ Association is weaker than correlation or proportionality. These relations may b A spatial quality inhering in a bearer by virtue of the bearer's being located toward the back or upper surface of an organism relative to another entity. - dorsal posterior_to (human torso) superior_to (human head) @@ -17789,7 +17659,6 @@ Association is weaker than correlation or proportionality. These relations may b A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity. - distal quality PATO:0001234 @@ -19165,7 +19034,6 @@ Association is weaker than correlation or proportionality. These relations may b A temperature which is relatively high. - PATO:0000678 high temperature hot @@ -19189,7 +19057,6 @@ Association is weaker than correlation or proportionality. These relations may b A temperature which is relatively low. - PATO:0000677 cold low temperature @@ -19213,7 +19080,6 @@ Association is weaker than correlation or proportionality. These relations may b A variability of temperature which is relatively low. - low variability of temperature quality PATO:0001307 @@ -19235,7 +19101,6 @@ Association is weaker than correlation or proportionality. These relations may b A variability of temperature which is relatively high. - high variability of temperature quality PATO:0001308 @@ -19300,7 +19165,6 @@ Association is weaker than correlation or proportionality. These relations may b A duration of temperature which is lesser relative to the normal or average enduring or continuing in time. - quality PATO:0001311 @@ -19321,7 +19185,6 @@ Association is weaker than correlation or proportionality. These relations may b A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time. - high duration of temperature quality PATO:0001312 @@ -19342,7 +19205,6 @@ Association is weaker than correlation or proportionality. These relations may b A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature. - quality PATO:0001313 @@ -19362,7 +19224,6 @@ Association is weaker than correlation or proportionality. These relations may b A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature. - quality PATO:0001314 @@ -19440,7 +19301,6 @@ Association is weaker than correlation or proportionality. These relations may b A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli. - quality PATO:0001318 @@ -19462,7 +19322,6 @@ Association is weaker than correlation or proportionality. These relations may b A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli. - quality PATO:0001319 @@ -20192,7 +20051,6 @@ Association is weaker than correlation or proportionality. These relations may b A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere. - quality PATO:0001355 @@ -20337,7 +20195,6 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed. - quality PATO:0001362 @@ -21320,7 +21177,6 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's having distinct structure. - quality PATO:0001411 @@ -21340,7 +21196,6 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure. - quality PATO:0001412 @@ -21420,7 +21275,6 @@ Association is weaker than correlation or proportionality. These relations may b A duration which has regular start and/or end times. - quality PATO:0001416 @@ -21440,7 +21294,6 @@ Association is weaker than correlation or proportionality. These relations may b A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times. - quality PATO:0001417 @@ -22204,7 +22057,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's dependence on oxygen. - quality PATO:0001455 @@ -22225,7 +22077,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's independence on oxygen. - quality PATO:0001456 @@ -22289,7 +22140,6 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen. - quality PATO:0001459 @@ -22310,7 +22160,6 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen. - quality PATO:0001460 @@ -22552,7 +22401,6 @@ Association is weaker than correlation or proportionality. These relations may b A depth which is relatively low. - PATO:0001692 low depth shallow @@ -22617,7 +22465,6 @@ Association is weaker than correlation or proportionality. These relations may b A position which is relatively high. - quality high position PATO:0001475 @@ -22639,7 +22486,6 @@ Association is weaker than correlation or proportionality. These relations may b A positional which is relatively low. - quality low position PATO:0001476 @@ -22820,7 +22666,6 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together. - PATO:0001840 compact compressed @@ -22969,7 +22814,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001493 @@ -22983,7 +22827,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001494 @@ -23120,7 +22963,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development. - quality underdeveloped PATO:0001501 @@ -23296,7 +23138,6 @@ Association is weaker than correlation or proportionality. These relations may b A functionality quality held by the bearer when the latter is able to perform a regular function(s). - quality PATO:0001510 @@ -23317,7 +23158,6 @@ Association is weaker than correlation or proportionality. These relations may b A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s). - PATO:0001640 disfunctional functional failure @@ -23832,7 +23672,6 @@ Association is weaker than correlation or proportionality. These relations may b A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid. - soluble quality PATO:0001537 @@ -23855,7 +23694,6 @@ Association is weaker than correlation or proportionality. These relations may b A solubility quality inhering in a substance by virtue of the bearer's inability of a substance to dissolve in a liquid. - insoluble quality PATO:0001538 @@ -23976,7 +23814,6 @@ Association is weaker than correlation or proportionality. These relations may b A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking. - bendy quality PATO:0001544 @@ -23998,7 +23835,6 @@ Association is weaker than correlation or proportionality. These relations may b A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking. - stiff quality stiffness @@ -24083,7 +23919,6 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity toward an external stimulus which is higher than normal/average. - high sensitivity toward increased sensitivity quality @@ -24108,7 +23943,6 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity toward an external stimulus which is lower than normal/average. - decreased sensitivity low sensitivity toward quality @@ -24133,7 +23967,6 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity of a process which is higher than normal or average. - high sensitivity of occurrent increased sensitivity of occurrent quality @@ -24157,7 +23990,6 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity of a process which is lower than normal or average. - decreased sensitivity of occurrent low sensitivity of occurrent quality @@ -24181,7 +24013,6 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity of occurrent to oxygen which is higher than normal or average. - high sensitivity of occurrent to oxygen quality PATO:0001553 @@ -24204,7 +24035,6 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity of a process to oxygen which is lower than normal or average. - low sensitivity of occurrent to oxygen quality PATO:0001554 @@ -24359,7 +24189,6 @@ Association is weaker than correlation or proportionality. These relations may b A mass which is lower than normal or average. - PATO:0000579 low mass small mass @@ -24383,7 +24212,6 @@ Association is weaker than correlation or proportionality. These relations may b A mass which is higher than normal or average. - PATO:0000578 high mass large mass @@ -24436,7 +24264,6 @@ Association is weaker than correlation or proportionality. These relations may b A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up. - PATO:0001513 diffuse scattered @@ -24460,7 +24287,6 @@ Association is weaker than correlation or proportionality. These relations may b A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up. - quality PATO:0001567 @@ -24591,7 +24417,6 @@ Association is weaker than correlation or proportionality. These relations may b A pressure which is relatively low. - low pressure quality PATO:0001575 @@ -24613,7 +24438,6 @@ Association is weaker than correlation or proportionality. These relations may b A pressure which is relatively high. - high pressure quality PATO:0001576 @@ -24635,7 +24459,6 @@ Association is weaker than correlation or proportionality. These relations may b A permeability which is relatively high. - high permeability quality PATO:0001577 @@ -24658,7 +24481,6 @@ Association is weaker than correlation or proportionality. These relations may b A permeability which is relatively low. - low permeability quality PATO:0001578 @@ -24702,7 +24524,6 @@ Association is weaker than correlation or proportionality. These relations may b A contractility which is relatively high. - high contractility quality PATO:0001580 @@ -24725,7 +24546,6 @@ Association is weaker than correlation or proportionality. These relations may b A contractility which is relatively low. - low contractility quality PATO:0001581 @@ -24767,7 +24587,6 @@ Association is weaker than correlation or proportionality. These relations may b A variability which is relatively low. - low variability quality PATO:0001583 @@ -24789,7 +24608,6 @@ Association is weaker than correlation or proportionality. These relations may b A variability which is relatively high. - high variability quality PATO:0001584 @@ -24858,7 +24676,6 @@ Association is weaker than correlation or proportionality. These relations may b A variability of rate which is relatively high. - high variability of rate quality PATO:0001587 @@ -24880,7 +24697,6 @@ Association is weaker than correlation or proportionality. These relations may b A variability of rate which is relatively low. - low variability of rate quality PATO:0001588 @@ -24962,7 +24778,6 @@ Association is weaker than correlation or proportionality. These relations may b A curvature which is relatively high. - quality PATO:0001592 @@ -24983,7 +24798,6 @@ Association is weaker than correlation or proportionality. These relations may b A curvature which is relatively low. - quality PATO:0001593 @@ -25043,7 +24857,6 @@ Association is weaker than correlation or proportionality. These relations may b A depth quality which is relatively high. - PATO:0001666 deep quality @@ -25190,7 +25003,6 @@ Association is weaker than correlation or proportionality. These relations may b A life span which is relatively high. - high life span quality PATO:0001603 @@ -25211,7 +25023,6 @@ Association is weaker than correlation or proportionality. These relations may b A life span which is relatively low. - low life span quality PATO:0001604 @@ -25367,7 +25178,6 @@ Association is weaker than correlation or proportionality. These relations may b A variability of color which is relatively high. - high variability of color quality PATO:0001612 @@ -25389,7 +25199,6 @@ Association is weaker than correlation or proportionality. These relations may b A variability of color which is relatively low. - low variability of color quality PATO:0001613 @@ -25410,7 +25219,6 @@ Association is weaker than correlation or proportionality. These relations may b A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color. - quality PATO:0001614 @@ -25430,7 +25238,6 @@ Association is weaker than correlation or proportionality. These relations may b A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour. - quality PATO:0001615 @@ -25482,7 +25289,6 @@ Association is weaker than correlation or proportionality. These relations may b A tonicity which is relatively high. - high tonicity quality PATO:0001618 @@ -25505,7 +25311,6 @@ Association is weaker than correlation or proportionality. These relations may b A tonicity which is relatively low. - low tonicity quality PATO:0001619 @@ -25548,7 +25353,6 @@ Association is weaker than correlation or proportionality. These relations may b A turgor which is relatively low. - low turgor quality PATO:0001621 @@ -25571,7 +25375,6 @@ Association is weaker than correlation or proportionality. These relations may b A turgor which is relatively high. - high turgor quality PATO:0001622 @@ -25616,7 +25419,6 @@ Association is weaker than correlation or proportionality. These relations may b A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s). - PATO:0001556 PATO:0001568 PATO:0001641 @@ -25649,7 +25451,6 @@ Association is weaker than correlation or proportionality. These relations may b A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s). - high functionality quality PATO:0001625 @@ -25692,7 +25493,6 @@ Association is weaker than correlation or proportionality. These relations may b A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality. - quality adequate PATO:0001627 @@ -25713,7 +25513,6 @@ Association is weaker than correlation or proportionality. These relations may b A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality. - quality inadequate PATO:0001628 @@ -25852,7 +25651,6 @@ Association is weaker than correlation or proportionality. These relations may b A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being essential or indispensable. - quality PATO:0001635 @@ -25872,7 +25670,6 @@ Association is weaker than correlation or proportionality. These relations may b A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable. - quality PATO:0001636 @@ -25911,7 +25708,6 @@ Association is weaker than correlation or proportionality. These relations may b A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable. - quality PATO:0001638 @@ -25931,7 +25727,6 @@ Association is weaker than correlation or proportionality. These relations may b A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable. - quality PATO:0001639 @@ -26103,7 +25898,6 @@ Association is weaker than correlation or proportionality. These relations may b A resistance to a stimulus which is relatively high. - high resistance to increased resistance quality @@ -26128,7 +25922,6 @@ Association is weaker than correlation or proportionality. These relations may b A resistance to a stimulus which is relatively low. - decreased resistance low resistance to quality @@ -26178,7 +25971,6 @@ Association is weaker than correlation or proportionality. These relations may b An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity. - aligned quality aligned to @@ -26201,7 +25993,6 @@ Association is weaker than correlation or proportionality. These relations may b An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity. - misaligned unaligned with quality @@ -26246,7 +26037,6 @@ Association is weaker than correlation or proportionality. These relations may b A osmolarity which is relatively low. - low osmolarity quality PATO:0001656 @@ -26269,7 +26059,6 @@ Association is weaker than correlation or proportionality. These relations may b A osmolarity which is relatively high. - high osmolarity quality PATO:0001657 @@ -26394,7 +26183,6 @@ Association is weaker than correlation or proportionality. These relations may b A solubility which is relatively high. - high solubility quality PATO:0001663 @@ -26418,7 +26206,6 @@ Association is weaker than correlation or proportionality. These relations may b A solubility which is relatively low. - low solubility quality PATO:0001664 @@ -26520,7 +26307,6 @@ Association is weaker than correlation or proportionality. These relations may b A susceptibility toward an external stimulus which is higher than normal/average. - high susceptibility toward increased susceptibility quality @@ -26545,7 +26331,6 @@ Association is weaker than correlation or proportionality. These relations may b A susceptibility toward an external stimulus which is lower than normal/average. - decreased susceptibility low susceptibility toward quality @@ -26570,7 +26355,6 @@ Association is weaker than correlation or proportionality. These relations may b A distribution which is relatively high. - high distribution quality PATO:0001671 @@ -26592,7 +26376,6 @@ Association is weaker than correlation or proportionality. These relations may b A distribution which is relatively low. - low distribution quality PATO:0001672 @@ -26656,7 +26439,6 @@ Association is weaker than correlation or proportionality. These relations may b An efficiency which is relatively low. - low efficiency quality PATO:0001675 @@ -26678,7 +26460,6 @@ Association is weaker than correlation or proportionality. These relations may b An efficiency which is relatively high. - high efficiency quality PATO:0001676 @@ -26700,7 +26481,6 @@ Association is weaker than correlation or proportionality. These relations may b An efficiency quality inhering in a bearer by virtue of the bearer's lacking efficiency. - quality PATO:0001677 @@ -26720,7 +26500,6 @@ Association is weaker than correlation or proportionality. These relations may b An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency. - quality PATO:0001678 @@ -26823,7 +26602,6 @@ Association is weaker than correlation or proportionality. These relations may b A magnetism which is relatively high. - high magnetism quality PATO:0001683 @@ -26846,7 +26624,6 @@ Association is weaker than correlation or proportionality. These relations may b A magnetism which is relatively low. - low magnetism quality PATO:0001684 @@ -26869,7 +26646,6 @@ Association is weaker than correlation or proportionality. These relations may b A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism. - quality PATO:0001685 @@ -26890,7 +26666,6 @@ Association is weaker than correlation or proportionality. These relations may b A magnetic quality inhering in a bearer by virtue of the bearer's inability to exert magnitism. - quality PATO:0001686 @@ -26931,7 +26706,6 @@ Association is weaker than correlation or proportionality. These relations may b An elevation which is relatively high. - high elevation quality elevated @@ -26954,7 +26728,6 @@ Association is weaker than correlation or proportionality. These relations may b An elevation which is relatively low. - low elevation quality PATO:0001689 @@ -26976,7 +26749,6 @@ Association is weaker than correlation or proportionality. These relations may b A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted. - quality PATO:0001690 @@ -26998,7 +26770,6 @@ Association is weaker than correlation or proportionality. These relations may b A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted. - quality PATO:0001691 @@ -27031,7 +26802,6 @@ Association is weaker than correlation or proportionality. These relations may b A viscosity which relatively high. - high viscosity quality PATO:0001693 @@ -27054,7 +26824,6 @@ Association is weaker than correlation or proportionality. These relations may b A viscosity which relatively low. - low viscosity quality PATO:0001694 @@ -27077,7 +26846,6 @@ Association is weaker than correlation or proportionality. These relations may b A fecundity which is relatively high. - high fecundity quality PATO:0001695 @@ -27100,7 +26868,6 @@ Association is weaker than correlation or proportionality. These relations may b A fecundity which is relatively low. - low fecundity quality PATO:0001696 @@ -27123,7 +26890,6 @@ Association is weaker than correlation or proportionality. These relations may b A photosensitivity which is relatively low. - low photosensitivity quality PATO:0001697 @@ -27147,7 +26913,6 @@ Association is weaker than correlation or proportionality. These relations may b A photosensitivity which is relatively high. - high photosensitivity quality PATO:0001698 @@ -27170,7 +26935,6 @@ Association is weaker than correlation or proportionality. These relations may b A sleep pattern which has regular start and/or end times. - quality PATO:0001699 @@ -27190,7 +26954,6 @@ Association is weaker than correlation or proportionality. These relations may b A sleep pattern which has irregular start and/or end times. - quality PATO:0001700 @@ -27210,7 +26973,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development. - quality PATO:0001701 @@ -27311,7 +27073,6 @@ Association is weaker than correlation or proportionality. These relations may b A behavioral quality inhering in a bearer by virtue of the bearer's disposition to lack activity. - quality PATO:0001706 @@ -27332,7 +27093,6 @@ Association is weaker than correlation or proportionality. These relations may b A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity. - quality PATO:0001707 @@ -27433,7 +27193,6 @@ Association is weaker than correlation or proportionality. These relations may b A perimeter which is relatively high. - quality PATO:0001712 @@ -27454,7 +27213,6 @@ Association is weaker than correlation or proportionality. These relations may b A perimeter which is relatively low. - quality PATO:0001713 @@ -27475,7 +27233,6 @@ Association is weaker than correlation or proportionality. These relations may b A diameter which is relatively large. - quality PATO:0001714 @@ -27496,7 +27253,6 @@ Association is weaker than correlation or proportionality. These relations may b A diameter which is relatively small. - quality PATO:0001715 @@ -27516,7 +27272,6 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking. - quality resilient strong @@ -27650,7 +27405,6 @@ Association is weaker than correlation or proportionality. These relations may b A female receptivity which is relatively high. - high female receptivity quality PATO:0001723 @@ -27673,7 +27427,6 @@ Association is weaker than correlation or proportionality. These relations may b A female receptivity which is relatively low. - low female receptivity quality PATO:0001724 @@ -27696,7 +27449,6 @@ Association is weaker than correlation or proportionality. These relations may b A male receptivity which is relatively high. - high male receptivity quality PATO:0001725 @@ -27719,7 +27471,6 @@ Association is weaker than correlation or proportionality. These relations may b A male receptivity which is relatively low. - low male receptivity quality PATO:0001726 @@ -28047,7 +27798,6 @@ Association is weaker than correlation or proportionality. These relations may b A radioactivity which is relatively low. - high radioactivity quality PATO:0001742 @@ -28069,7 +27819,6 @@ Association is weaker than correlation or proportionality. These relations may b A radioactivity which is relatively high. - low radioactivity quality PATO:0001743 @@ -28191,7 +27940,6 @@ Association is weaker than correlation or proportionality. These relations may b A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth. - hypoplastic growth pedomorphic growth quality @@ -28251,7 +27999,6 @@ Association is weaker than correlation or proportionality. These relations may b A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth. - hyperplastic growth quality PATO:0001752 @@ -28413,7 +28160,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001760 @@ -28427,7 +28173,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001761 @@ -28441,7 +28186,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001762 @@ -28455,7 +28199,6 @@ Association is weaker than correlation or proportionality. These relations may b - quality PATO:0001763 @@ -28471,7 +28214,6 @@ Association is weaker than correlation or proportionality. These relations may b An age which is high relative to the normal or average. - high age quality PATO:0001764 @@ -28493,7 +28235,6 @@ Association is weaker than correlation or proportionality. These relations may b An age which is low relative to the normal or average. - low age quality PATO:0001765 @@ -28706,7 +28447,6 @@ Association is weaker than correlation or proportionality. These relations may b A flexibility which is relatively high. - high flexibility quality PATO:0001776 @@ -28729,7 +28469,6 @@ Association is weaker than correlation or proportionality. These relations may b A flexibility which is relatively low. - low flexibility quality PATO:0001777 @@ -28752,7 +28491,6 @@ Association is weaker than correlation or proportionality. These relations may b A strength which is relatively high. - high strength quality PATO:0001778 @@ -28774,7 +28512,6 @@ Association is weaker than correlation or proportionality. These relations may b A strength which is relatively low. - weak quality PATO:0001779 @@ -28836,7 +28573,6 @@ Association is weaker than correlation or proportionality. These relations may b An intensity which is relatively high. - high intensity quality PATO:0001782 @@ -28858,7 +28594,6 @@ Association is weaker than correlation or proportionality. These relations may b An intensity which is relatively low. - low intensity quality PATO:0001783 @@ -28971,7 +28706,6 @@ Association is weaker than correlation or proportionality. These relations may b A density which is higher relative to the normal or average. - high density quality PATO:0001788 @@ -29014,7 +28748,6 @@ Association is weaker than correlation or proportionality. These relations may b A density which is lower relative to the normal or average. - low density quality PATO:0001790 @@ -29118,7 +28851,6 @@ Association is weaker than correlation or proportionality. These relations may b A coiling which is relatively high. - high coiling quality PATO:0001795 @@ -29141,7 +28873,6 @@ Association is weaker than correlation or proportionality. These relations may b A coiling which is relatively low. - low coiling quality PATO:0001796 @@ -29359,7 +29090,6 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity to irradiation which is relatively low. - low sensitivity to irradiation quality PATO:0001807 @@ -29382,7 +29112,6 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity to irradiation which is relatively high. - high sensitivity to irradiation quality PATO:0001808 @@ -29547,7 +29276,6 @@ Association is weaker than correlation or proportionality. These relations may b A fatigability which is relatively high. - high fatigability quality PATO:0001816 @@ -29570,7 +29298,6 @@ Association is weaker than correlation or proportionality. These relations may b A fatigability which is relatively low. - low fatigability quality PATO:0001817 @@ -29592,7 +29319,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time. - quality PATO:0001818 @@ -29645,7 +29371,6 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's having no opening. - unperforated quality PATO:0001821 @@ -29689,7 +29414,6 @@ Association is weaker than correlation or proportionality. These relations may b A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid. - quality PATO:0001823 @@ -29710,7 +29434,6 @@ Association is weaker than correlation or proportionality. These relations may b A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid. - quality PATO:0001824 @@ -29732,7 +29455,6 @@ Association is weaker than correlation or proportionality. These relations may b A wetness quality that is relatively high. - quality PATO:0001825 @@ -29753,7 +29475,6 @@ Association is weaker than correlation or proportionality. These relations may b A wetness quality that is relatively low. - low wetness quality PATO:0001826 @@ -29832,7 +29553,6 @@ Association is weaker than correlation or proportionality. These relations may b A female fertility which is relatively low. - low female fertility quality PATO:0001830 @@ -29855,7 +29575,6 @@ Association is weaker than correlation or proportionality. These relations may b A female fertility which is relatively high. - high female fertility quality PATO:0001831 @@ -29878,7 +29597,6 @@ Association is weaker than correlation or proportionality. These relations may b A male fertility which is relatively high. - high male fertility quality PATO:0001832 @@ -29901,7 +29619,6 @@ Association is weaker than correlation or proportionality. These relations may b A male fertility which is relatively low. - low male fertility quality PATO:0001833 @@ -29924,7 +29641,6 @@ Association is weaker than correlation or proportionality. These relations may b A fertility which is relatively low. - low fertility quality PATO:0001834 @@ -29947,7 +29663,6 @@ Association is weaker than correlation or proportionality. These relations may b A fertility which is relatively high. - high fertility quality PATO:0001835 @@ -30000,7 +29715,6 @@ Association is weaker than correlation or proportionality. These relations may b A flow that is relatively low. - low flow quality PATO:0001838 @@ -30022,7 +29736,6 @@ Association is weaker than correlation or proportionality. These relations may b A fluid flow that is relatively high. - high flow quality PATO:0001839 @@ -30096,7 +29809,6 @@ Association is weaker than correlation or proportionality. These relations may b An acidity which is relatively low. - low acidity quality PATO:0001843 @@ -30118,7 +29830,6 @@ Association is weaker than correlation or proportionality. These relations may b An acidity which is relatively high. - high acidity quality PATO:0001844 @@ -30397,7 +30108,6 @@ Association is weaker than correlation or proportionality. These relations may b A shape quality in a bearer by virtue of the bearer's curving inward. - quality PATO:0001857 @@ -30438,7 +30148,6 @@ Association is weaker than correlation or proportionality. These relations may b A coordination which is relatively high. - high coordination quality PATO:0001859 @@ -30461,7 +30170,6 @@ Association is weaker than correlation or proportionality. These relations may b A coordination which is relatively low. - low coordination quality PATO:0001860 @@ -30484,7 +30192,6 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve. - fascicled quality PATO:0001861 @@ -30527,7 +30234,6 @@ Association is weaker than correlation or proportionality. These relations may b A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration. - quality PATO:0001863 @@ -30986,7 +30692,6 @@ Association is weaker than correlation or proportionality. These relations may b A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water. - quality PATO:0001884 @@ -31007,7 +30712,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water. - quality PATO:0001885 @@ -31028,7 +30732,6 @@ Association is weaker than correlation or proportionality. These relations may b A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water. - quality PATO:0001886 @@ -31049,7 +30752,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water. - quality PATO:0001887 @@ -31166,7 +30868,6 @@ Association is weaker than correlation or proportionality. These relations may b An odor quality of having decreased odor. - quality PATO:0001892 @@ -31187,7 +30888,6 @@ Association is weaker than correlation or proportionality. These relations may b An odor quality of having increased odor. - quality PATO:0001893 @@ -31239,7 +30939,6 @@ Association is weaker than correlation or proportionality. These relations may b A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. - quality PATO:0001896 @@ -31259,7 +30958,6 @@ Association is weaker than correlation or proportionality. These relations may b A structure quality inhering in a bearer by virtue of the bearer's having a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. - quality PATO:0001897 @@ -31281,7 +30979,6 @@ Association is weaker than correlation or proportionality. These relations may b A circumference which is relatively high. - quality PATO:0001898 @@ -31302,7 +30999,6 @@ Association is weaker than correlation or proportionality. These relations may b A circumference which is relatively low. - quality PATO:0001899 @@ -31322,7 +31018,6 @@ Association is weaker than correlation or proportionality. These relations may b A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north. - quality PATO:0001900 @@ -31342,7 +31037,6 @@ Association is weaker than correlation or proportionality. These relations may b A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south. - quality PATO:0001901 @@ -31830,7 +31524,6 @@ Association is weaker than correlation or proportionality. These relations may b A fluorescence which is higher than normal. - high fluorescence quality PATO:0001926 @@ -31852,7 +31545,6 @@ Association is weaker than correlation or proportionality. These relations may b A fluorescence which is lower than normal. - low fluorescence quality PATO:0001927 @@ -31919,7 +31611,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape. - quality PATO:0001930 @@ -31939,7 +31630,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape. - quality PATO:0001931 @@ -32450,7 +32140,6 @@ Association is weaker than correlation or proportionality. These relations may b A variability of size which is relatively low. - low variability of size quality PATO:0001957 @@ -32472,7 +32161,6 @@ Association is weaker than correlation or proportionality. These relations may b A variability of size which is relatively high. - high variability of size quality PATO:0001958 @@ -32493,7 +32181,6 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated. - quality PATO:0001959 @@ -32800,7 +32487,6 @@ Association is weaker than correlation or proportionality. These relations may b A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex. - quality PATO:0001975 @@ -33220,7 +32906,6 @@ Association is weaker than correlation or proportionality. These relations may b An amount which is relatively low. - PATO:0000419 PATO:0000468 decreased number @@ -33316,7 +33001,6 @@ Association is weaker than correlation or proportionality. These relations may b The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. - PATO:0001569 decreased number of has decreased number of @@ -33342,7 +33026,6 @@ Association is weaker than correlation or proportionality. These relations may b The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. - PATO:0001560 has extra parts of has increased number of @@ -33454,7 +33137,6 @@ Association is weaker than correlation or proportionality. These relations may b A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave. - Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png quality PATO:0002007 @@ -33482,7 +33164,6 @@ Association is weaker than correlation or proportionality. These relations may b A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave. - Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png quality PATO:0002008 @@ -33641,7 +33322,6 @@ Association is weaker than correlation or proportionality. These relations may b - high magnitude quality PATO:0002017 @@ -33654,7 +33334,6 @@ Association is weaker than correlation or proportionality. These relations may b - low magnitude quality PATO:0002018 @@ -33805,7 +33484,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time. - george gkoutos 2008-12-18T12:49:19Z quality @@ -33853,7 +33531,6 @@ Association is weaker than correlation or proportionality. These relations may b An osmolality which is relatively low. - george 2009-01-27T10:55:33Z low osmolality @@ -33878,7 +33555,6 @@ Association is weaker than correlation or proportionality. These relations may b An osmolality which is relatively high. - george 2009-01-27T10:56:19Z high osmolality @@ -34079,7 +33755,6 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer whose structure which does not deteriorate. - george 2009-02-03T11:14:54Z not degenerate @@ -34102,7 +33777,6 @@ Association is weaker than correlation or proportionality. These relations may b A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces. - quality PATO:0002039 @@ -34122,7 +33796,6 @@ Association is weaker than correlation or proportionality. These relations may b A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface. - Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx quality PATO:0002040 @@ -34164,7 +33837,6 @@ Association is weaker than correlation or proportionality. These relations may b An anterior-posterior diameter quality which is relatively small. - low anterior-posterior diameter quality PATO:0002042 @@ -34186,7 +33858,6 @@ Association is weaker than correlation or proportionality. These relations may b An anterior-posterior diameter quality which is relatively large. - high anterior-posterior diameter quality PATO:0002043 @@ -34368,7 +34039,6 @@ Association is weaker than correlation or proportionality. These relations may b An occurrence which is relatively high. - George Gkoutos 2009-03-26T11:10:11Z increased incidence @@ -34391,7 +34061,6 @@ Association is weaker than correlation or proportionality. These relations may b An occurrence which is relatively low. - George Gkoutos 2009-03-26T11:12:35Z decreased incidence @@ -34458,7 +34127,6 @@ Association is weaker than correlation or proportionality. These relations may b A fragility which is relatively high. - George Gkoutos 2009-03-26T04:01:37Z quality @@ -34482,7 +34150,6 @@ Association is weaker than correlation or proportionality. These relations may b A fragility which is relatively low. - George Gkoutos 2009-03-26T04:02:14Z quality @@ -34506,7 +34173,6 @@ Association is weaker than correlation or proportionality. These relations may b An area which is relatively high. - George Gkoutos 2009-03-30T04:11:43Z quality @@ -34529,7 +34195,6 @@ Association is weaker than correlation or proportionality. These relations may b An area which is relatively low. - George Gkoutos 2009-03-30T04:12:11Z quality @@ -34729,7 +34394,6 @@ Association is weaker than correlation or proportionality. These relations may b A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration. - George Gkoutos 2009-07-01T02:31:53Z quality @@ -34752,7 +34416,6 @@ Association is weaker than correlation or proportionality. These relations may b A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration. - George Gkoutos 2009-07-01T02:33:41Z quality @@ -34800,7 +34463,6 @@ Association is weaker than correlation or proportionality. These relations may b An affinity which is relatively high. - George Gkoutos 2009-09-18T01:29:42Z quality @@ -34825,7 +34487,6 @@ Association is weaker than correlation or proportionality. These relations may b An affinity which is relatively low. - George Gkoutos 2009-09-18T01:30:11Z quality @@ -34874,7 +34535,6 @@ Association is weaker than correlation or proportionality. These relations may b An avidity which is relatively high. - George Gkoutos 2009-09-18T01:45:56Z quality @@ -34899,7 +34559,6 @@ Association is weaker than correlation or proportionality. These relations may b An avidity which is relatively low. - George Gkoutos 2009-09-18T01:45:59Z quality @@ -35409,7 +35068,6 @@ Association is weaker than correlation or proportionality. These relations may b A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type. - george 2009-10-05T12:58:54Z quality @@ -35432,7 +35090,6 @@ Association is weaker than correlation or proportionality. These relations may b A cellular quality inhering in a bearer by virtue of having not yet acquired a special structure of function. - george 2009-10-05T12:59:21Z quality @@ -35702,7 +35359,6 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes. - george 2009-10-05T03:37:05Z PATO:0000649 @@ -36307,7 +35963,6 @@ Association is weaker than correlation or proportionality. These relations may b A physical quality inhering in a bearer by virtue of the bearer being suitable for use as food. - george 2009-10-26T01:21:34Z quality @@ -36331,7 +35986,6 @@ Association is weaker than correlation or proportionality. These relations may b A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food. - george 2009-10-26T01:22:27Z quality @@ -36405,7 +36059,6 @@ Association is weaker than correlation or proportionality. These relations may b A radiopacity that is relatively high. - george 2009-10-30T03:30:39Z quality @@ -36429,7 +36082,6 @@ Association is weaker than correlation or proportionality. These relations may b A radiopacity that is relatively low. - george 2009-10-30T03:31:31Z quality @@ -36476,7 +36128,6 @@ Association is weaker than correlation or proportionality. These relations may b A virulence that is relatively low. - george 2009-10-30T05:05:02Z attenuated @@ -36500,7 +36151,6 @@ Association is weaker than correlation or proportionality. These relations may b A virulence that is relatively high. - george 2009-10-30T05:13:10Z quality @@ -37402,7 +37052,6 @@ Association is weaker than correlation or proportionality. These relations may b A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. - George Gkoutos 2010-03-10T03:25:59Z quality @@ -37424,7 +37073,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic. - George Gkoutos 2010-03-10T03:26:41Z quality @@ -37492,7 +37140,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge. - George Gkoutos 2010-03-10T03:30:06Z quality @@ -37514,7 +37161,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge. - George Gkoutos 2010-03-10T03:30:39Z quality @@ -38048,7 +37694,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group. - george 2010-07-09T01:50:14Z quality @@ -38071,7 +37716,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups. - george 2010-07-09T01:51:52Z hyperphosphorylated @@ -38095,7 +37739,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully. - george 2010-07-09T01:54:22Z hypophosporylated @@ -38598,7 +38241,6 @@ Association is weaker than correlation or proportionality. These relations may b A force which relative high. - george 2010-08-04T11:12:20Z increased force amplitude @@ -38622,7 +38264,6 @@ Association is weaker than correlation or proportionality. These relations may b A force which is relative low. - george 2010-08-04T11:13:13Z decreased force amplitude @@ -38674,7 +38315,6 @@ Association is weaker than correlation or proportionality. These relations may b A degree of pigmentation quality inhering in a bearer by virtue of the bearer's having substances produced by living organisms that have a color resulting from selective color absorption. - george 2010-08-09T04:16:49Z quality @@ -38697,7 +38337,6 @@ Association is weaker than correlation or proportionality. These relations may b A degree of pigmentation quality inhering in a bearer by virtue of the bearer's lacking substances produced by living organisms that have a color resulting from selective color absorption. - george 2010-08-09T04:17:04Z depigmented @@ -38722,7 +38361,6 @@ Association is weaker than correlation or proportionality. These relations may b A degree of pigmentation quality that is relatively high. - george 2010-08-09T04:17:19Z hyperpigmented @@ -38747,7 +38385,6 @@ Association is weaker than correlation or proportionality. These relations may b A degree of pigmentation quality that is relative low. - george 2010-08-09T04:17:37Z hypopigmented @@ -39017,7 +38654,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group. - george 2010-09-16T09:04:21Z quality @@ -39161,7 +38797,6 @@ Association is weaker than correlation or proportionality. These relations may b An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner. - george 2010-10-26T02:00:20Z accumulated @@ -39185,7 +38820,6 @@ Association is weaker than correlation or proportionality. These relations may b An accumulation which is relative low. - george 2010-10-26T02:04:45Z quality @@ -39419,7 +39053,6 @@ Association is weaker than correlation or proportionality. These relations may b A mobility which is relative high. - george 2011-03-09T09:16:03Z quality @@ -39442,7 +39075,6 @@ Association is weaker than correlation or proportionality. These relations may b A mobility which is relative low. - george 2011-03-09T09:16:47Z quality @@ -39486,7 +39118,6 @@ Association is weaker than correlation or proportionality. These relations may b Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity. - george 2011-03-10T09:07:57Z quality @@ -39508,7 +39139,6 @@ Association is weaker than correlation or proportionality. These relations may b Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity. - george 2011-03-10T09:08:37Z quality @@ -39531,7 +39161,6 @@ Association is weaker than correlation or proportionality. These relations may b An elasticity which is relatively high. - George Gkoutos 2011-03-30T11:50:21Z quality @@ -39554,7 +39183,6 @@ Association is weaker than correlation or proportionality. These relations may b An elasticity which is relatively low. - George Gkoutos 2011-03-30T11:50:39Z quality @@ -39740,7 +39368,6 @@ Association is weaker than correlation or proportionality. These relations may b A cellular motility which is lower relative to the normal or average. - quality PATO:0002297 @@ -39761,7 +39388,6 @@ Association is weaker than correlation or proportionality. These relations may b A cellular motility which is higher relative to the normal or average. - quality PATO:0002298 @@ -39811,7 +39437,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality that has a value that is increased compared to normal or average. - George Gkoutos 2011-06-16T06:39:43Z quality @@ -39838,7 +39463,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality that has a value that is decreased compared to normal or average. - George Gkoutos 2011-06-16T06:40:15Z quality @@ -39860,7 +39484,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a process that has a value that is decreased compared to normal or average. - George Gkoutos 2011-06-16T06:50:59Z quality @@ -39882,7 +39505,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality of an object that has a value that is decreased compared to normal or average. - George Gkoutos 2011-06-16T06:51:54Z quality @@ -39904,7 +39526,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a process that has a value that is increased compared to normal or average. - George Gkoutos 2011-06-16T06:53:08Z quality @@ -39926,7 +39547,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality of an object that has a value that is increased compared to normal or average. - George Gkoutos 2011-06-16T06:54:01Z quality @@ -40283,7 +39903,6 @@ Association is weaker than correlation or proportionality. These relations may b - George Gkoutos 2011-10-12T12:50:59Z quality @@ -40297,7 +39916,6 @@ Association is weaker than correlation or proportionality. These relations may b - George Gkoutos 2011-10-12T12:51:19Z quality @@ -40413,7 +40031,6 @@ Association is weaker than correlation or proportionality. These relations may b An angle which is relatively high. - George Gkoutos 2011-11-23T12:06:38Z quality @@ -40437,7 +40054,6 @@ Association is weaker than correlation or proportionality. These relations may b An angle which is relatively low. - George Gkoutos 2011-11-23T12:06:54Z quality @@ -40502,7 +40118,6 @@ Association is weaker than correlation or proportionality. These relations may b A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact. - gkoutos 2012-01-31T12:28:16Z quality @@ -40525,7 +40140,6 @@ Association is weaker than correlation or proportionality. These relations may b A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact. - gkoutos 2012-01-31T12:28:57Z quality @@ -40549,7 +40163,6 @@ Association is weaker than correlation or proportionality. These relations may b A adhesivity which is relatively high. - gkoutos 2012-01-31T12:32:43Z quality @@ -40572,7 +40185,6 @@ Association is weaker than correlation or proportionality. These relations may b A adhesivity which is relatively low. - gkoutos 2012-01-31T12:42:22Z quality @@ -40992,7 +40604,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality of an physical object that is currently realizing one of its functions. - gkoutos 2012-01-31T04:52:04Z quality @@ -41014,7 +40625,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a physical object that is currently realizing none of its functions. - gkoutos 2012-01-31T04:52:14Z quality @@ -41145,7 +40755,6 @@ Association is weaker than correlation or proportionality. These relations may b A tendency which is relatively high. - gkoutos 2012-03-16T06:31:57Z quality @@ -41170,7 +40779,6 @@ Association is weaker than correlation or proportionality. These relations may b A tendency which is relatively low. - gkoutos 2012-03-16T06:32:57Z quality @@ -41215,7 +40823,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width. - gkoutos 2012-04-18T06:31:29Z quality @@ -41468,7 +41075,6 @@ Association is weaker than correlation or proportionality. These relations may b A structure quality inhering in a bearer by virtue of the bearer's being filled with air. - gkoutos 2012-07-05T02:55:10Z air-filled @@ -41491,7 +41097,6 @@ Association is weaker than correlation or proportionality. These relations may b A structure quality inhering in a bearer by virtue of the bearer's being not filed with air. - gkoutos 2012-07-05T02:56:07Z quality @@ -41599,7 +41204,6 @@ Association is weaker than correlation or proportionality. These relations may b A waxiness which is relatively high. - gkoutos 2012-07-05T03:18:03Z quality @@ -41622,7 +41226,6 @@ Association is weaker than correlation or proportionality. These relations may b A waxiness which is relatively low. - gkoutos 2012-07-05T03:18:14Z quality @@ -41833,7 +41436,6 @@ Association is weaker than correlation or proportionality. These relations may b A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus. - gkoutos 2012-11-15T05:32:07Z quality @@ -41857,7 +41459,6 @@ Association is weaker than correlation or proportionality. These relations may b A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus. - gkoutos 2012-11-15T05:33:05Z quality @@ -42872,7 +42473,6 @@ Association is weaker than correlation or proportionality. These relations may b A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures. - gkoutos 2013-01-29T10:59:42Z quality @@ -42894,7 +42494,6 @@ Association is weaker than correlation or proportionality. These relations may b A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures. - gkoutos 2013-01-29T11:00:20Z quality @@ -43110,7 +42709,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed. - gkoutos 2013-04-08T08:43:31Z quality @@ -43502,7 +43100,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position. - gkoutos 2013-09-15T12:03:45Z quality @@ -43525,7 +43122,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position. - gkoutos 2013-09-15T12:05:06Z quality @@ -43937,7 +43533,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally. - gkoutos 2013-10-10T05:12:15Z anterodorsally directed @@ -44004,7 +43599,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distally. - gkoutos 2013-10-10T05:14:37Z distally directed @@ -44027,7 +43621,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally. - gkoutos 2013-10-10T05:15:24Z dorsally directed @@ -44226,7 +43819,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally. - gkoutos 2013-10-10T05:19:36Z posterodorsally directed @@ -44699,7 +44291,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally. - segerdel 2014-03-11T11:28:39Z antero-distal orientation @@ -44721,7 +44312,6 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally. - segerdel 2014-03-11T11:29:22Z postero-distal orientation @@ -45364,7 +44954,6 @@ height'). A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts. - wasila.dahdul 2014-09-25T15:11:47Z quality @@ -45386,7 +44975,6 @@ height'). A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities. - wasila.dahdul 2014-09-25T15:12:35Z quality @@ -45809,7 +45397,6 @@ height'). A decrease in the ability of a process to produce its output. - cjm quality PATO:0015003 @@ -45831,7 +45418,6 @@ height'). A increase in the ability of a process to produce its output. - cjm quality PATO:0015004 @@ -45965,7 +45551,6 @@ height'). An increase in humidity. - quality humid PATO:0015010 @@ -45987,7 +45572,6 @@ height'). An decrease in humidity. - quality PATO:0015011 @@ -46046,7 +45630,6 @@ height'). An increase in illumination. - quality illuminated PATO:0015014 @@ -46068,7 +45651,6 @@ height'). An decrease in illumination. - quality PATO:0015015 @@ -46210,7 +45792,6 @@ height'). An increase in combustibility. - combustible quality PATO:0015022 @@ -46226,7 +45807,6 @@ height'). An decrease in combustibility. - quality noncombustible PATO:0015023 @@ -46262,7 +45842,6 @@ height'). An decrease in porosity. - quality PATO:0015025 @@ -46324,7 +45903,6 @@ height'). A decrease in stability. - quality PATO:0015028 @@ -46468,7 +46046,6 @@ height'). A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration. - pbuttigieg 2015-09-01T16:18:57Z undrinkable @@ -46490,7 +46067,6 @@ height'). A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration. - pbuttigieg 2015-09-01T16:19:02Z drinkable @@ -48701,7 +48277,6 @@ height'). North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west. - Luke Slater 2017-12-22T14:16:43Z quality @@ -48723,7 +48298,6 @@ height'). East is one of the four cardinal directions or points of the compass. It is the opposite direction from west. - Luke Slater 2017-12-22T14:16:43Z quality @@ -48745,7 +48319,6 @@ height'). South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west. - Luke Slater 2017-12-22T14:16:43Z quality @@ -48767,7 +48340,6 @@ height'). West is one of the four cardinal directions or points of the compass. It is the opposite direction from east. - Luke Slater 2017-12-22T14:16:43Z quality diff --git a/pato.json b/pato.json index 7c45f9e6..d62d334b 100644 --- a/pato.json +++ b/pato.json @@ -32,9 +32,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000487" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -76,29 +73,6 @@ }, "type" : "CLASS", "lbl" : "regulation of cell communication" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000487", - "meta" : { - "definition" : { - "val" : "A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "responsive", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000488" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "responsive to" }, { "id" : "http://purl.obolibrary.org/obo/GO_0044424", "meta" : { @@ -123,6 +97,26 @@ }, "type" : "CLASS", "lbl" : "obsolete intracellular part" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000487", + "meta" : { + "definition" : { + "val" : "A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "responsive", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "responsive to" }, { "id" : "http://purl.obolibrary.org/obo/GO_0010647", "meta" : { @@ -554,9 +548,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000498" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -649,9 +640,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000499" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000715" @@ -1546,9 +1534,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001857" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -1973,9 +1958,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001716" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -2320,9 +2302,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001777" } ] }, "type" : "CLASS", @@ -2384,9 +2363,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001776" } ] }, "type" : "CLASS", @@ -2567,9 +2543,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001779" } ] }, "type" : "CLASS", @@ -2603,9 +2576,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001778" } ] }, "type" : "CLASS", @@ -2652,9 +2622,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000330" } ] }, "type" : "CLASS", @@ -2831,9 +2798,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001790" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3017,9 +2981,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001308" } ] }, "type" : "CLASS", @@ -3066,9 +3027,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001307" } ] }, "type" : "CLASS", @@ -3108,9 +3066,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001306" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000678" @@ -3138,9 +3093,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000677" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001305" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -3254,9 +3206,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001782" } ] }, "type" : "CLASS", @@ -3385,9 +3334,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001783" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3418,9 +3364,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001313" } ] }, "type" : "CLASS", @@ -3586,9 +3529,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001795" } ] }, "type" : "CLASS", @@ -3609,9 +3549,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001311" } ] }, "type" : "CLASS", @@ -3642,9 +3579,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001314" } ] }, "type" : "CLASS", @@ -3665,9 +3599,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000462" } ] }, "type" : "CLASS", @@ -3681,9 +3612,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001319" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3738,9 +3666,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001318" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3823,9 +3748,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001788" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3880,9 +3802,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, "type" : "CLASS", @@ -3907,9 +3826,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "See documentation here: http://code.google.com/p/phenotype-ontologies/wiki/ModelingOfAbsence" @@ -3969,9 +3885,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001796" } ] }, "type" : "CLASS", @@ -3992,9 +3905,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000460" } ] }, "type" : "CLASS", @@ -4010,9 +3920,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001312" } ] }, "type" : "CLASS", @@ -4048,9 +3955,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000463" } ] }, "type" : "CLASS", @@ -4071,9 +3975,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000464" } ] }, "type" : "CLASS", @@ -4393,9 +4294,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001997" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000650" }, { @@ -4791,9 +4689,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000414" } ] }, "type" : "CLASS", @@ -4981,9 +4876,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001363" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000415" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -5020,9 +4912,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000892" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5317,9 +5206,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001752" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5417,9 +5303,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001742" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5535,9 +5418,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001743" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5583,9 +5463,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000404" } ] }, "type" : "CLASS", @@ -5657,9 +5534,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000402" } ] }, "type" : "CLASS", @@ -5729,9 +5603,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000890" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5772,9 +5643,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000891" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5808,9 +5676,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000888" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5893,9 +5758,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000423" } ] }, "type" : "CLASS", @@ -5944,9 +5806,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001749" } ] }, "type" : "CLASS", @@ -5973,9 +5832,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000422" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6065,9 +5921,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000427" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6103,9 +5956,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000428" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6222,9 +6072,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001764" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6272,9 +6119,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001760" } ] }, "type" : "CLASS", @@ -6308,9 +6152,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001765" } ] }, "type" : "CLASS", @@ -6423,9 +6264,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001227" } ] }, "type" : "CLASS", @@ -6450,9 +6288,6 @@ "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001762" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6466,9 +6301,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001761" } ] }, "type" : "CLASS", @@ -6493,9 +6325,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001763" } ] }, "type" : "CLASS", @@ -6652,9 +6481,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001706" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6731,9 +6557,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001707" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6784,9 +6607,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001699" } ] }, "type" : "CLASS", @@ -6900,9 +6720,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001501" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -7033,9 +6850,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001362" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -7174,9 +6988,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001715" } ] }, "type" : "CLASS", @@ -7216,9 +7027,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001714" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -7234,9 +7042,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001713" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -7267,9 +7072,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001712" } ] }, "type" : "CLASS", @@ -7486,6 +7288,19 @@ }, "type" : "CLASS", "lbl" : "obsolete fearful" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000877", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute respiratory rate value" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001725", "meta" : { @@ -7500,28 +7315,12 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001726" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", "lbl" : "increased male receptivity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000877", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete absolute respiratory rate value" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001726", "meta" : { @@ -7538,9 +7337,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001725" } ] }, "type" : "CLASS", @@ -7572,9 +7368,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001724" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -7608,9 +7401,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001723" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -8880,9 +8670,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015022" } ] }, "type" : "CLASS", @@ -8933,9 +8720,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015023" } ] }, "type" : "CLASS", @@ -8966,9 +8750,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015027" } ] }, "type" : "CLASS", @@ -8982,9 +8763,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015024" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -9299,9 +9077,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015011" } ] }, "type" : "CLASS", @@ -9317,9 +9092,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015010" } ] }, "type" : "CLASS", @@ -9370,9 +9142,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015015" } ] }, "type" : "CLASS", @@ -9388,9 +9157,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015014" } ] }, "type" : "CLASS", @@ -9454,9 +9220,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002196" } ] }, "type" : "CLASS", @@ -9470,9 +9233,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002195" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" }, { @@ -9610,9 +9370,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002192" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-10T03:25:59Z" @@ -9637,9 +9394,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002191" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -9755,9 +9509,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002147" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-30T05:13:10Z" @@ -9870,9 +9621,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002139" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-26T01:22:27Z" @@ -9981,9 +9729,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002148" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" }, { @@ -10028,9 +9773,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002145" } ] }, "type" : "CLASS", @@ -10044,9 +9786,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002144" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-30T03:31:31Z" }, { @@ -10468,9 +10207,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015004" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "cjm" @@ -10489,9 +10225,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015003" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "cjm" @@ -11625,9 +11358,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002099" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" }, { @@ -12068,9 +11798,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001821" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000649" @@ -12657,9 +12384,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002140" } ] }, "type" : "CLASS", @@ -13173,9 +12897,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001700" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13241,9 +12962,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001698" } ] }, "type" : "CLASS", @@ -13290,9 +13008,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001697" } ] }, "type" : "CLASS", @@ -13376,9 +13091,6 @@ }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "This refers to the disposition of the bearer." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001690" } ] }, "type" : "CLASS", @@ -13465,9 +13177,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001691" } ] }, "type" : "CLASS", @@ -13501,9 +13210,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001696" } ] }, "type" : "CLASS", @@ -13576,9 +13282,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001695" } ] }, "type" : "CLASS", @@ -13597,9 +13300,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001694" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13638,9 +13338,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000370" } ] }, "type" : "CLASS", @@ -13707,9 +13404,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001693" } ] }, "type" : "CLASS", @@ -13766,9 +13460,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000438" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13858,9 +13549,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000328" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13878,9 +13566,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000365" } ] }, "type" : "CLASS", @@ -13949,9 +13634,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000375" } ] }, "type" : "CLASS", @@ -14085,9 +13767,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000374" } ] }, "type" : "CLASS", @@ -14101,9 +13780,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001863" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14259,9 +13935,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000380" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14286,9 +13959,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000381" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14362,9 +14032,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001234" } ] }, "type" : "CLASS", @@ -14411,9 +14078,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001233" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14431,9 +14095,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000386" } ] }, "type" : "CLASS", @@ -14475,9 +14136,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000387" } ] }, "type" : "CLASS", @@ -15078,9 +14736,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001657" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15148,9 +14803,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001654" } ] }, "type" : "CLASS", @@ -15255,9 +14907,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001653" } ] }, "type" : "CLASS", @@ -15276,9 +14925,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000665" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15389,9 +15035,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002527" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -15418,9 +15061,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001656" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15447,9 +15087,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001229" } ] }, "type" : "CLASS", @@ -15508,9 +15145,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001650" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15580,9 +15214,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001651" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15813,9 +15444,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001663" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15864,9 +15492,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000331" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000332" @@ -16109,9 +15734,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001670" } ] }, "type" : "CLASS", @@ -16127,9 +15749,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000440" } ] }, "type" : "CLASS", @@ -16163,9 +15782,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001664" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16263,9 +15879,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000336" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16283,9 +15896,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001678" } ] }, "type" : "CLASS", @@ -16335,9 +15945,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000344" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16374,9 +15981,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001677" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16392,9 +15996,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000345" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16415,9 +16016,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001676" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16495,9 +16093,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001675" } ] }, "type" : "CLASS", @@ -16618,9 +16213,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-03-11T11:28:39Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002491" } ] }, "type" : "CLASS", @@ -16640,9 +16232,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-03-11T11:29:22Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002504" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -16673,9 +16262,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001669" } ] }, "type" : "CLASS", @@ -16804,9 +16390,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001672" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16853,9 +16436,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001671" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16926,9 +16506,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001689" } ] }, "type" : "CLASS", @@ -17007,9 +16584,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001688" } ] }, "type" : "CLASS", @@ -17087,9 +16661,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001685" } ] }, "type" : "CLASS", @@ -17263,9 +16834,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001975" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17420,9 +16988,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001683" } ] }, "type" : "CLASS", @@ -17500,9 +17065,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001686" } ] }, "type" : "CLASS", @@ -17611,9 +17173,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001684" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17634,9 +17193,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001618" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17683,9 +17239,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001619" } ] }, "type" : "CLASS", @@ -17783,9 +17336,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001613" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17858,9 +17408,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001614" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17979,9 +17526,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001612" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17997,9 +17541,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000770" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18015,9 +17556,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001615" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18173,9 +17711,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000760" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18196,9 +17731,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000761" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18221,9 +17753,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001627" } ] }, "type" : "CLASS", @@ -18266,9 +17795,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001621" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18380,9 +17906,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001622" } ] }, "type" : "CLASS", @@ -18437,9 +17960,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001628" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18497,9 +18017,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001625" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -18534,9 +18051,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001624" } ] }, "type" : "CLASS", @@ -18563,9 +18077,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000769" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18637,9 +18148,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000308" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18657,9 +18165,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000309" } ] }, "type" : "CLASS", @@ -18673,9 +18178,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001638" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18748,9 +18250,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000299" } ] }, "type" : "CLASS", @@ -18829,9 +18328,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000304" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18949,9 +18445,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000303" } ] }, "type" : "CLASS", @@ -18978,9 +18471,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001639" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18996,9 +18486,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001636" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -19029,9 +18516,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001635" } ] }, "type" : "CLASS", @@ -20307,9 +19791,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001603" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -20357,24 +19838,6 @@ }, "type" : "CLASS", "lbl" : "obsolete vocalization value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000758", - "meta" : { - "definition" : { - "val" : "A balance quality inhering in a bearer by virtue of the bearer's lacking balance.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000757" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "unbalanced" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001602", "meta" : { @@ -20395,6 +19858,21 @@ }, "type" : "CLASS", "lbl" : "distended" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000758", + "meta" : { + "definition" : { + "val" : "A balance quality inhering in a bearer by virtue of the bearer's lacking balance.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "unbalanced" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000757", "meta" : { @@ -20404,9 +19882,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000758" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -20426,9 +19901,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001604" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -20697,9 +20169,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000709" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000708" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -20736,9 +20205,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000706" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000707" }, { @@ -20759,9 +20225,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000700" } ] }, "type" : "CLASS", @@ -20785,9 +20248,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000701" } ] }, "type" : "CLASS", @@ -21184,9 +20644,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002068" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-07-01T02:33:41Z" @@ -21226,9 +20683,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002069" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-07-01T02:31:53Z" @@ -21371,9 +20825,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002075" } ] }, "type" : "CLASS", @@ -21395,9 +20846,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002074" } ] }, "type" : "CLASS", @@ -21452,9 +20900,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002071" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-09-18T01:30:11Z" @@ -21521,9 +20966,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002072" } ] }, "type" : "CLASS", @@ -21784,9 +21226,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002100" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -22054,9 +21493,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002028" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-01-27T10:56:19Z" @@ -22101,9 +21537,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002029" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-01-27T10:55:33Z" @@ -22189,9 +21622,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001171" } ] }, "type" : "CLASS", @@ -22267,9 +21697,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001818" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2008-12-18T12:49:19Z" }, { @@ -22384,9 +21811,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001172" } ] }, "type" : "CLASS", @@ -22405,9 +21829,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000639" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-02-03T11:14:54Z" }, { @@ -22429,9 +21850,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002040" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -22847,9 +22265,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002042" } ] }, "type" : "CLASS", @@ -22922,9 +22337,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001192" } ] }, "type" : "CLASS", @@ -22960,9 +22372,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002043" } ] }, "type" : "CLASS", @@ -23115,9 +22524,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001194" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -23136,9 +22542,6 @@ "val" : "Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx" } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002039" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -23236,9 +22639,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002056" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-26T04:01:37Z" @@ -23262,9 +22662,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002051" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-26T11:12:35Z" }, { @@ -23312,9 +22709,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002057" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-30T04:12:11Z" @@ -23357,9 +22751,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-26T04:02:14Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002055" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -23381,9 +22772,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002058" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-30T04:11:43Z" @@ -23429,9 +22817,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002052" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" }, { @@ -24024,9 +23409,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-09-15T12:05:06Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002471" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -24153,9 +23535,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002472" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-09-15T12:03:45Z" }, { @@ -24322,9 +23701,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000300" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -24434,9 +23810,6 @@ }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "Use this term or an is_a child of this term when the entire shape of the object is known." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002008" } ] }, "type" : "CLASS", @@ -24455,9 +23828,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002007" } ] }, "type" : "CLASS", @@ -24600,9 +23970,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001153" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -24678,9 +24045,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001152" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -24881,9 +24245,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002002" - }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type." }, { @@ -24926,9 +24287,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002364" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -24965,9 +24323,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002001" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001560" }, { @@ -25086,9 +24441,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002017" } ] }, "type" : "CLASS", @@ -25148,9 +24500,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002018" } ] }, "type" : "CLASS", @@ -25171,9 +24520,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-10T05:14:37Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002495" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -25198,9 +24544,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001162" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -25236,9 +24579,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002494" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -25343,9 +24683,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001163" } ] }, "type" : "CLASS", @@ -25376,24 +24713,6 @@ }, "type" : "CLASS", "lbl" : "anteroventral orientation" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001167", - "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001168" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "damaged" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002498", "meta" : { @@ -25420,6 +24739,21 @@ }, "type" : "CLASS", "lbl" : "medial orientation" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001167", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "damaged" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002014", "meta" : { @@ -25487,9 +24821,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001167" } ] }, "type" : "CLASS", @@ -25632,6 +24963,19 @@ "id" : "http://www.geneontology.org/formats/oboInOwl#SubsetProperty", "type" : "PROPERTY", "lbl" : "subset_property" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001160", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete unconcentrated" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002491", "meta" : { @@ -25646,9 +24990,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002526" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -25661,19 +25002,6 @@ }, "type" : "CLASS", "lbl" : "anterodorsal orientation" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001160", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete unconcentrated" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000246", "meta" : { @@ -25724,9 +25052,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001577" } ] }, "type" : "CLASS", @@ -25817,9 +25142,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001575" } ] }, "type" : "CLASS", @@ -25887,9 +25209,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001578" } ] }, "type" : "CLASS", @@ -26199,9 +25518,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001576" } ] }, "type" : "CLASS", @@ -26461,9 +25777,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001588" } ] }, "type" : "CLASS", @@ -26549,9 +25862,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001587" } ] }, "type" : "CLASS", @@ -26671,9 +25981,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001580" } ] }, "type" : "CLASS", @@ -26727,9 +26034,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001581" } ] }, "type" : "CLASS", @@ -26890,9 +26194,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001584" } ] }, "type" : "CLASS", @@ -26958,9 +26259,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001583" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -27425,9 +26723,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001593" } ] }, "type" : "CLASS", @@ -27443,9 +26738,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001592" } ] }, "type" : "CLASS", @@ -27548,9 +26840,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001472" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001666" }, { @@ -27686,9 +26975,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002442" } ] }, "type" : "CLASS", @@ -27801,9 +27087,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002441" } ] }, "type" : "CLASS", @@ -28362,9 +27645,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-08T08:43:31Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001485" } ] }, "type" : "CLASS", @@ -28564,9 +27844,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000695" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -28715,9 +27992,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001537" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -28751,9 +28025,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000690" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000429" }, { @@ -28840,9 +28111,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001538" } ] }, "type" : "CLASS", @@ -28993,9 +28261,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001544" } ] }, "type" : "CLASS", @@ -29193,9 +28458,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001545" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -29261,9 +28523,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001550" } ] }, "type" : "CLASS", @@ -29410,9 +28669,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000689" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000426" }, { @@ -29578,9 +28834,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000688" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -29922,9 +29175,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001553" } ] }, "type" : "CLASS", @@ -30184,9 +29434,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001551" } ] }, "type" : "CLASS", @@ -30241,9 +29488,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001554" } ] }, "type" : "CLASS", @@ -30281,9 +29525,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001549" } ] }, "type" : "CLASS", @@ -30321,9 +29562,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001552" } ] }, "type" : "CLASS", @@ -30386,9 +29624,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001566" } ] }, "type" : "CLASS", @@ -30537,9 +29772,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001567" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001513" @@ -30740,9 +29972,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001562" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000578" @@ -30912,9 +30141,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000579" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001563" } ] }, "type" : "CLASS", @@ -30970,9 +30196,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000651" } ] }, "type" : "CLASS", @@ -31016,9 +30239,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001206" } ] }, "type" : "CLASS", @@ -31046,9 +30266,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000645" } ] }, "type" : "CLASS", @@ -31171,9 +30388,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000644" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -31519,9 +30733,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001701" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -31922,9 +31133,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000642" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -32115,9 +31323,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000468" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000470" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -32215,9 +31420,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001511" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -32255,9 +31457,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000327" } ] }, "type" : "CLASS", @@ -32290,9 +31489,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001640" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001510" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -33283,9 +32479,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000610" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -33351,9 +32544,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001931" } ] }, "type" : "CLASS", @@ -33369,9 +32559,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001930" } ] }, "type" : "CLASS", @@ -33398,9 +32585,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000599" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -33669,9 +32853,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000633" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -33789,9 +32970,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000608" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -33799,29 +32977,26 @@ "type" : "CLASS", "lbl" : "open" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000613", + "id" : "http://purl.obolibrary.org/obo/PATO_0001945", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A moderate yellow-orange to orange color.", + "xrefs" : [ "wordreference:wordreference" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000614" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "disoriented" + "lbl" : "ochre" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001945", + "id" : "http://purl.obolibrary.org/obo/PATO_0000613", "meta" : { "definition" : { - "val" : "A moderate yellow-orange to orange color.", - "xrefs" : [ "wordreference:wordreference" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -33830,7 +33005,7 @@ } ] }, "type" : "CLASS", - "lbl" : "ochre" + "lbl" : "disoriented" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001946", "meta" : { @@ -33900,38 +33075,35 @@ "type" : "CLASS", "lbl" : "wholly anterioralized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000614", + "id" : "http://purl.obolibrary.org/obo/PATO_0001944", "meta" : { "definition" : { - "val" : "A pattern where all the repeated elements are oriented in the same direction.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A color consisting of yellow and orange hue.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000613" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "oriented" + "lbl" : "yellow orange" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001944", + "id" : "http://purl.obolibrary.org/obo/PATO_0000614", "meta" : { "definition" : { - "val" : "A color consisting of yellow and orange hue.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A pattern where all the repeated elements are oriented in the same direction.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "yellow orange" + "lbl" : "oriented" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000628", "meta" : { @@ -33997,9 +33169,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001957" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -34030,9 +33199,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001861" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -34248,9 +33414,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001958" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -34490,9 +33653,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002038" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -34626,9 +33786,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000619" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -35092,9 +34249,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-09-25T15:11:47Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0005013" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -35119,9 +34273,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "wasila.dahdul" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0005012" } ] }, "type" : "CLASS", @@ -35287,6 +34438,10 @@ }, "type" : "CLASS", "lbl" : "multinucleate" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#consider", + "type" : "PROPERTY", + "lbl" : "consider" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001901", "meta" : { @@ -35296,19 +34451,12 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001900" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", "lbl" : "back" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#consider", - "type" : "PROPERTY", - "lbl" : "consider" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001902", "meta" : { @@ -35333,9 +34481,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001901" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -35608,9 +34753,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001926" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -35669,9 +34811,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001927" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -36368,9 +35507,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-07-05T03:18:03Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002383" } ] }, "type" : "CLASS", @@ -36406,9 +35542,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002382" } ] }, "type" : "CLASS", @@ -36761,9 +35894,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002394" } ] }, "type" : "CLASS", @@ -36808,9 +35938,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002393" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-11-15T05:33:05Z" @@ -37219,9 +36346,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Luke Slater" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0045093" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-12-22T14:16:43Z" @@ -37246,9 +36370,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Luke Slater" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0045094" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -37283,9 +36404,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0045091" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -37323,9 +36441,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Luke Slater" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0045092" } ] }, "type" : "CLASS", @@ -37868,9 +36983,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001494" } ] }, "type" : "CLASS", @@ -37968,9 +37080,6 @@ }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001493" } ] }, "type" : "CLASS", @@ -38918,9 +38027,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002354" } ] }, "type" : "CLASS", @@ -39065,9 +38171,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-31T04:52:04Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002355" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -39319,9 +38422,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-03-16T06:32:57Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002361" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -39479,9 +38579,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002362" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-03-16T06:31:57Z" }, { @@ -39543,9 +38640,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0025002" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -39619,53 +38713,50 @@ "type" : "CLASS", "lbl" : "obsolete consumption quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0025002", + "id" : "http://purl.obolibrary.org/obo/PATO_0001035", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration.", - "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "drinkable", + "val" : "force amplitude", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0025001" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2015-09-01T16:19:02Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "pbuttigieg" } ] }, "type" : "CLASS", - "lbl" : "potable" + "lbl" : "force" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001035", + "id" : "http://purl.obolibrary.org/obo/PATO_0025002", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.", - "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration.", + "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "force amplitude", + "val" : "drinkable", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2015-09-01T16:19:02Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "pbuttigieg" } ] }, "type" : "CLASS", - "lbl" : "force" + "lbl" : "potable" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000186", "meta" : { @@ -39733,9 +38824,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001154" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -40236,9 +39324,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001046" } ] }, "type" : "CLASS", @@ -40414,9 +39499,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002376" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -40451,9 +39533,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001043" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -40560,9 +39639,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-07-05T02:55:10Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002377" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -40900,9 +39976,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -40988,9 +40061,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-06-16T06:54:01Z" @@ -41012,9 +40082,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001456" } ] }, "type" : "CLASS", @@ -41027,9 +40094,6 @@ "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-06-16T06:50:59Z" }, { @@ -41066,9 +40130,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001455" } ] }, "type" : "CLASS", @@ -41081,9 +40142,6 @@ "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" }, { @@ -41193,9 +40251,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001460" } ] }, "type" : "CLASS", @@ -41306,9 +40361,6 @@ "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -41357,9 +40409,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-06-16T06:40:15Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002300" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -41979,9 +41028,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001459" } ] }, "type" : "CLASS", @@ -42548,9 +41594,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002328" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-23T12:06:38Z" }, { @@ -42710,9 +41753,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-23T12:06:54Z" @@ -42782,9 +41822,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001596" } ] }, "type" : "CLASS", @@ -42905,9 +41942,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001476" } ] }, "type" : "CLASS", @@ -42937,9 +41971,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-10-12T12:51:19Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002321" } ] }, "type" : "CLASS", @@ -42965,6 +41996,19 @@ }, "type" : "CLASS", "lbl" : "temporal distribution quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000142", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete substance" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001476", "meta" : { @@ -42979,28 +42023,12 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001475" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", "lbl" : "decreased position" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000142", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete substance" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002320", "meta" : { @@ -43116,9 +42144,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002322" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-10-12T12:50:59Z" @@ -43801,9 +42826,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002334" } ] }, "type" : "CLASS", @@ -43893,9 +42915,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002333" } ] }, "type" : "CLASS", @@ -43978,9 +42997,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002332" } ] }, "type" : "CLASS", @@ -44016,9 +43032,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001840" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002452" } ] }, "type" : "CLASS", @@ -44045,9 +43058,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-31T12:28:57Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002331" } ] }, "type" : "CLASS", @@ -44261,9 +43271,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001896" } ] }, "type" : "CLASS", @@ -44305,9 +43312,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001899" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44340,9 +43344,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001412" } ] }, "type" : "CLASS", @@ -44371,9 +43372,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001897" } ] }, "type" : "CLASS", @@ -44407,9 +43405,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001411" } ] }, "type" : "CLASS", @@ -44428,9 +43423,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000570" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44448,9 +43440,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001416" } ] }, "type" : "CLASS", @@ -44492,9 +43481,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001898" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44548,9 +43534,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001417" } ] }, "type" : "CLASS", @@ -44586,9 +43569,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001892" } ] }, "type" : "CLASS", @@ -44703,9 +43683,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001893" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45054,9 +44031,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000569" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45160,9 +44134,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000573" } ] }, "type" : "CLASS", @@ -45193,9 +44164,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000574" } ] }, "type" : "CLASS", @@ -45350,9 +44318,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000586" } ] }, "type" : "CLASS", @@ -45452,9 +44417,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001202" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000587" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -45783,9 +44745,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000582" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45812,9 +44771,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000583" } ] }, "type" : "CLASS", @@ -45850,9 +44806,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000412" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000584" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -45889,9 +44842,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000585" } ] }, "type" : "CLASS", @@ -46149,9 +45099,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000600" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -46317,9 +45264,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000591" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -46354,9 +45298,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000592" } ] }, "type" : "CLASS", @@ -46450,9 +45391,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000595" } ] }, "type" : "CLASS", @@ -46526,9 +45464,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000596" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -46719,9 +45654,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001860" } ] }, "type" : "CLASS", @@ -46880,9 +45812,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001355" } ] }, "type" : "CLASS", @@ -47182,9 +46111,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000389" } ] }, "type" : "CLASS", @@ -47344,9 +46270,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001859" } ] }, "type" : "CLASS", @@ -47365,9 +46288,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001959" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47552,9 +46472,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000546" } ] }, "type" : "CLASS", @@ -47599,9 +46516,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000547" } ] }, "type" : "CLASS", @@ -47838,9 +46752,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001884" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47912,9 +46823,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001885" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47932,9 +46840,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001886" } ] }, "type" : "CLASS", @@ -48017,9 +46922,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001887" } ] }, "type" : "CLASS", @@ -48328,39 +47230,36 @@ "type" : "CLASS", "lbl" : "catalytic activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001817", + "id" : "http://purl.obolibrary.org/obo/PATO_0000969", "meta" : { "definition" : { - "val" : "A fatigability which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally small.", + "xrefs" : [ "Answers.com:Answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low fatigability", + "val" : "dwarfed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001816" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased fatigability" + "lbl" : "dwarf-like" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000969", + "id" : "http://purl.obolibrary.org/obo/PATO_0001817", "meta" : { "definition" : { - "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally small.", - "xrefs" : [ "Answers.com:Answers.com" ] + "val" : "A fatigability which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "dwarfed", + "val" : "low fatigability", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -48369,7 +47268,7 @@ } ] }, "type" : "CLASS", - "lbl" : "dwarf-like" + "lbl" : "decreased fatigability" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001818", "meta" : { @@ -48379,9 +47278,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002026" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48430,9 +47326,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001817" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48522,9 +47415,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000964" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48592,9 +47482,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000963" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48816,9 +47703,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001825" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48884,9 +47768,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002112" } ] }, "type" : "CLASS", @@ -48954,9 +47835,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001823" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48985,9 +47863,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001826" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49033,9 +47908,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001824" } ] }, "type" : "CLASS", @@ -49165,9 +48037,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001838" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49229,9 +48098,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001839" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49265,9 +48131,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001830" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49283,9 +48146,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000982" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49306,9 +48166,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001833" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49329,9 +48186,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000983" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49362,9 +48216,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000984" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49380,9 +48231,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000985" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49403,9 +48251,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001831" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49456,9 +48301,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001834" } ] }, "type" : "CLASS", @@ -49540,9 +48382,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001832" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49558,9 +48397,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000504" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49596,9 +48432,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001835" } ] }, "type" : "CLASS", @@ -49625,9 +48458,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000505" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49897,9 +48727,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001844" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -50093,9 +48920,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000516" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -50116,9 +48940,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001843" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -50139,9 +48960,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000513" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -50774,22 +49592,16 @@ }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "'increase in temperature' is-opposite-of 'decrease in temperature'" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", - "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#is_class_level", - "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "is_opposite_of" } ] }, "type" : "PROPERTY", - "lbl" : "is opposite of" + "lbl" : "is_opposite_of" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002608", "meta" : { @@ -50846,9 +49658,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000937" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -50864,9 +49673,6 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000938" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -51181,9 +49987,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001808" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -51269,9 +50072,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001807" } ] }, "type" : "CLASS", @@ -51427,9 +50227,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000955" } ] }, "type" : "CLASS", @@ -51445,9 +50242,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000956" } ] }, "type" : "CLASS", @@ -51773,9 +50567,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000911" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -51796,9 +50587,6 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000912" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -51974,9 +50762,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002220" } ] }, "type" : "CLASS", @@ -52720,9 +51505,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002271" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-10-26T02:00:20Z" @@ -52770,9 +51552,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002270" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-10-26T02:04:45Z" @@ -52820,9 +51599,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002286" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-03-10T09:07:57Z" @@ -52847,9 +51623,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002285" } ] }, "type" : "CLASS", @@ -52871,9 +51644,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002282" } ] }, "type" : "CLASS", @@ -52937,9 +51707,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-03-30T11:50:21Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002288" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -52964,9 +51731,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002287" } ] }, "type" : "CLASS", @@ -53041,9 +51805,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002283" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -53113,9 +51874,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002298" } ] }, "type" : "CLASS", @@ -53172,9 +51930,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002297" } ] }, "type" : "CLASS", @@ -53674,9 +52429,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002263" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -53870,9 +52622,6 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002222" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-07-09T01:51:52Z" @@ -53957,9 +52706,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-07-09T01:54:22Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002221" } ] }, "type" : "CLASS", @@ -54662,9 +53408,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002248" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-08-09T04:17:04Z" @@ -54725,9 +53468,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002249" } ] }, "type" : "CLASS", @@ -54951,9 +53691,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002246" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -55026,9 +53763,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002245" } ] }, "type" : "CLASS", @@ -55407,9 +54141,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-08-09T04:17:19Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002251" } ] }, "type" : "CLASS", @@ -55459,9 +54190,6 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002250" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-08-09T04:17:37Z" @@ -55737,10 +54465,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001247", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002332", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002331" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001381", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002017", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001280", "pred" : "is_a", @@ -55749,6 +54485,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001756", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001585" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002029", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002028" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098772", "pred" : "is_a", @@ -55757,10 +54497,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001053" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001700", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001699" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002038", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000639" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002441", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002442" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0042995", "pred" : "is_a", @@ -55829,6 +54581,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000937", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000938" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000328", "pred" : "is_a", @@ -55885,6 +54641,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0045936", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0006796" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001691", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001690" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002252", "pred" : "is_a", @@ -55913,14 +54673,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001629", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002178", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001729", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002178", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005004", "pred" : "is_a", @@ -56005,10 +54765,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002355", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002354" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000947", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002318" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002246", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002245" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001712", "pred" : "is_a", @@ -56025,10 +54793,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001862", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000274" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002028", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002029" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002026", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001818" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002339", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000454" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001975", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001206" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002332" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001515", "pred" : "is_a", @@ -56045,6 +54829,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001779", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001808", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001807" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045065", "pred" : "is_a", @@ -56105,6 +54893,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000409", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001460", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001459" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001921", "pred" : "is_a", @@ -56113,6 +54905,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002221", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002221" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043229", "pred" : "is_a", @@ -56125,6 +54921,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001593", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001592" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000599", "pred" : "is_a", @@ -56145,6 +54945,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000415", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001794" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001690", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001691" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000708", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000706" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002260", "pred" : "is_a", @@ -56153,6 +54961,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045087", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045000" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000938", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000937" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045091", "pred" : "is_a", @@ -56173,6 +54985,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001473", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000470" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001581", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001580" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001890", "pred" : "is_a", @@ -56249,6 +55065,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045077", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002039", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002040" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001713", "pred" : "is_a", @@ -56269,14 +55089,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051347", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043085" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0007165", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/GO_0051716" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002477", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0007165", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0051716" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001413", "pred" : "is_a", @@ -56285,10 +55105,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002179", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002322", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002321" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002189", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001632", "pred" : "is_a", @@ -56341,6 +55169,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001290" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000592" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001241", "pred" : "is_a", @@ -56353,6 +55185,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001400", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002249", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002248" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001549", "pred" : "is_a", @@ -56409,14 +55245,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004034", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004032" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001824", "pred" : "is_a", @@ -56433,6 +55269,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000070", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0001555" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001790", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001788" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002250", "pred" : "is_a", @@ -56445,6 +55285,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002334", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002333" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001986", "pred" : "is_a", @@ -56461,6 +55305,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001475", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009967", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -56469,6 +55317,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0025002", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0025001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001863", "pred" : "is_a", @@ -56481,6 +55333,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001233", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001234" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001584", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001583" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002332", "pred" : "is_a", @@ -56497,6 +55357,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0030000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000646" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000600", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000599" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004035", "pred" : "subPropertyOf", @@ -56513,6 +55377,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001294", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001292" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001694" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001578", "pred" : "is_a", @@ -56557,6 +55425,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001393", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001374" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002139", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002247", "pred" : "is_a", @@ -56589,6 +55461,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001242" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002220", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002263" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002248", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002249" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000375" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001401", "pred" : "is_a", @@ -56597,6 +55481,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000911", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002442", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002441" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000386", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000387" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002333", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002334" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0033674", "pred" : "is_a", @@ -56605,18 +55501,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001620", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002018", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002017" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001248", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001380", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002321", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002322" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000955" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001380", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000066", "pred" : "is_a", @@ -56665,14 +55569,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005886", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0071944" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001678", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001029" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001625", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001559" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001678", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001029" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001281", "pred" : "is_a", @@ -56689,6 +55593,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002022", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002334" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000592", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000591" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098797", "pred" : "is_a", @@ -56709,14 +55617,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001825", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001825", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001054", "pred" : "is_a", @@ -56725,6 +55633,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001657", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015022", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015023" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001611", "pred" : "is_a", @@ -56777,6 +55689,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002538", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002005" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001229", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000328" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002258", "pred" : "inverseOf", @@ -56813,6 +55729,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002042", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001715" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001583", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001584" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", "pred" : "is_a", @@ -56882,17 +55802,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002067" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001230" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", + "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001539", "pred" : "is_a", @@ -56921,14 +55841,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001773", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001643", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001178" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001643", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001402", "pred" : "is_a", @@ -56937,6 +55857,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001542", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001817", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001816" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001171", "pred" : "is_a", @@ -56961,10 +55885,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001599", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002376", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001318", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000189" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001927" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002452", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001485" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", "pred" : "is_a", @@ -57049,6 +55985,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0055001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002001", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002002" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002362", "pred" : "is_a", @@ -57057,6 +55997,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001997", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045093", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045091" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000169", "pred" : "is_a", @@ -57097,14 +56041,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001964", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000998", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000992" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002507", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000998", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000992" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001493", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001494" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0025001", "pred" : "is_a", @@ -57117,6 +56065,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0048585", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048583" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000470", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001997" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002338", "pred" : "is_a", @@ -57125,6 +56077,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002478", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001410" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045092", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045094" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000083", "pred" : "is_a", @@ -57205,14 +56161,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002367", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000384" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002367", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000384" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", "pred" : "is_a", @@ -57245,6 +56201,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045082", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001818", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002026" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001806", "pred" : "is_a", @@ -57265,6 +56225,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001655", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001817" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000596", "pred" : "is_a", @@ -57289,6 +56253,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001607", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001846" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002472", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002471" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001645", "pred" : "is_a", @@ -57301,6 +56269,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001390", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001389" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001701", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001501" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001764", "pred" : "is_a", @@ -57310,13 +56282,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001721" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009968", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0010648" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001707", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001706" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001788", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009968", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010648" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001823", "pred" : "is_a", @@ -57345,26 +56321,42 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0023051", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0050789" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002364", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001154" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001965", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002351", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001877", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001419" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002351", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002145", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002144" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002140", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002138" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045091", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045093" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002541", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001152" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", "pred" : "is_a", @@ -57381,6 +56373,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002482", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000438", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001227" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000336", "pred" : "is_a", @@ -57449,6 +56445,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009893", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048518" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001901", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001900" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002481", "pred" : "subPropertyOf", @@ -57489,6 +56489,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0025000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001807", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001808" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002148", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002147" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001359", "pred" : "is_a", @@ -57501,6 +56509,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000625" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002354", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002355" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045044", "pred" : "is_a", @@ -57521,6 +56533,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000381", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000380" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002300", "pred" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", @@ -57533,14 +56549,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001614", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000467", "pred" : "is_a", @@ -57577,6 +56593,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001499", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002221", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005488", "pred" : "is_a", @@ -57585,6 +56605,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000911", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000912" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001808", "pred" : "is_a", @@ -57593,6 +56617,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000060", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002246" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002286", "pred" : "subPropertyOf", @@ -57649,6 +56677,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002428", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002263" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001472", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001596" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001592", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001593" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015014", "pred" : "is_a", @@ -57661,6 +56697,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002483", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001580", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001581" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001962", "pred" : "is_a", @@ -57729,6 +56769,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001244", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000380", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000381" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001168", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001167" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000945", "pred" : "is_a", @@ -57757,6 +56805,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002269", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002377", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002376" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001927", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001926" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045031", "pred" : "is_a", @@ -57797,14 +56853,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001615", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", "pred" : "is_a", @@ -57865,6 +56921,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002271", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001699", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001700" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002013", "pred" : "subPropertyOf", @@ -57873,6 +56933,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045094", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045092" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0055002", "pred" : "is_a", @@ -57913,6 +56977,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001762", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000279" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001959", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001861" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002147", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002148" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001888", "pred" : "is_a", @@ -57933,30 +57005,58 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001626", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002002", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002001" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0016301", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001903", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001206", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001975" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001963", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001903", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051348", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051338" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001494", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001493" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000911" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002148", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001154", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002364" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000082", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001167", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001168" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000708" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005013", "pred" : "is_a", @@ -57985,6 +57085,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000070", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000068" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001227", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000438" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000440", "pred" : "is_a", @@ -58001,14 +57105,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0048584", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048583" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000944", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002124", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000944", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002366", "pred" : "is_a", @@ -58069,6 +57173,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002050", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0001905" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000599", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000600" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002186", "pred" : "is_a", @@ -58077,6 +57185,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000300", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001046", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001043" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001055", "pred" : "is_a", @@ -58093,10 +57205,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000625", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000370", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000365" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001324", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000608", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000610" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000619", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000633" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045006", "pred" : "is_a", @@ -58117,14 +57241,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002151", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001785" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002018", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002016" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002201", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002018", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002016" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002326", "pred" : "is_a", @@ -58145,6 +57269,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005622", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005575" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001958", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001957" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002139", "pred" : "is_a", @@ -58173,6 +57301,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0019220", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051174" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001618" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", "pred" : "is_a", @@ -58213,6 +57345,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002157", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001852" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002251", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002250" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000927", "pred" : "is_a", @@ -58237,6 +57373,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001026", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002287", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002288" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000119", "pred" : "is_a", @@ -58245,6 +57385,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000614", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000613" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002014", "pred" : "subPropertyOf", @@ -58253,6 +57397,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002058" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001389", "pred" : "is_a", @@ -58265,6 +57413,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0031325", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009893" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002069", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002068" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001375", "pred" : "is_a", @@ -58313,6 +57465,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004047", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002418" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000505", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000504" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002322", "pred" : "is_a", @@ -58321,6 +57477,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001398", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002102" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001162", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001163" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001341", "pred" : "is_a", @@ -58333,6 +57493,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009892", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0019222" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002250", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002251" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001462", "pred" : "is_a", @@ -58369,6 +57533,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001960", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001825", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001826" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002220", "pred" : "is_a", @@ -58445,10 +57613,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002335", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001619" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005575" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001715", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001714" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002383", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002382" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", "pred" : "is_a", @@ -58469,6 +57649,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000150", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001859", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001860" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000614", "pred" : "is_a", @@ -58477,6 +57661,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000700", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000701" }, { "sub" : "http://purl.obolibrary.org/obo/CL_0000000", "pred" : "is_a", @@ -58505,6 +57693,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002015", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002336" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002056", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002055" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002286", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002285" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001376", "pred" : "is_a", @@ -58521,6 +57717,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000631", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002298", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002297" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002068", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002069" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005018", "pred" : "is_a", @@ -58537,6 +57741,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045041", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000300", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001378", "pred" : "is_a", @@ -58605,6 +57813,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001546", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002198" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002382", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002383" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001586", "pred" : "is_a", @@ -58641,6 +57853,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002074", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001824", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001406", "pred" : "is_a", @@ -58653,6 +57869,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001796", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001958" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001946", "pred" : "is_a", @@ -58669,6 +57889,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001704", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001424" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001839", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001838" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002465", "pred" : "is_a", @@ -58721,10 +57945,18 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0048523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0050794" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002495", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002494" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002362", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002361" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045004", "pred" : "is_a", @@ -58737,6 +57969,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001242", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002469", "pred" : "is_a", @@ -58765,6 +58001,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005929", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/GO_0030990" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002471", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002472" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030005", "pred" : "is_a", @@ -58773,14 +58013,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015010", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015009" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000381", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000044" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0010004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0010002" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000381", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000044" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002109", "pred" : "is_a", @@ -58797,6 +58037,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002349", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002144", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002145" }, { "sub" : "http://purl.obolibrary.org/obo/pato#has_divisor_quality", "pred" : "subPropertyOf", @@ -58809,6 +58053,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005017", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000955", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000956" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000701", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000700" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000546", "pred" : "is_a", @@ -58873,10 +58125,18 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002405", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002412" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001043", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001046" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001989", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001591" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001152", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001153" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002595", "pred" : "subPropertyOf", @@ -58885,6 +58145,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002404", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002411" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000328", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001229" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000937", "pred" : "is_a", @@ -58953,14 +58217,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002537", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0042327", - "pred" : "http://purl.obolibrary.org/obo/RO_0002213", - "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002137", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002136" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042327", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001935", "pred" : "is_a", @@ -58997,6 +58261,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001900", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001901" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048018", "pred" : "is_a", @@ -59017,6 +58285,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002029", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002027" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001825" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045009", "pred" : "is_a", @@ -59053,6 +58325,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002352", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001838", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001839" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000389", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001863" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001868", "pred" : "is_a", @@ -59077,6 +58357,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002494", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002495" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001863", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000389" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002361", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002362" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002181", "pred" : "is_a", @@ -59149,6 +58441,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002258", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002324" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002058", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002057" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002288", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002287" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001870", "pred" : "is_a", @@ -59169,6 +58469,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002385", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002384" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000956", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000955" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002023", "pred" : "subPropertyOf", @@ -59229,6 +58533,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001486", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001163", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001162" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001827", "pred" : "is_a", @@ -59353,6 +58661,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002070" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001638" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040006", "pred" : "is_a", @@ -59385,6 +58697,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045067", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002271", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002270" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000665", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000327" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002009", "pred" : "is_a", @@ -59401,10 +58721,18 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005515", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005488" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000513", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000516" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0050790" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002282" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001178", "pred" : "is_a", @@ -59441,6 +58769,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000410", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000985", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000984" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043549", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -59477,6 +58809,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002375", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000428", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000427" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002024", "pred" : "subPropertyOf", @@ -59489,6 +58825,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001397", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001194", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001192" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001494", "pred" : "is_a", @@ -59497,6 +58837,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045080", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002146" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002271" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045060", "pred" : "is_a", @@ -59505,6 +58849,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002242", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002282", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002283" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001581", "pred" : "is_a", @@ -59533,6 +58881,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005886", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0016020" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001603", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001604" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040001", "pred" : "is_a", @@ -59541,6 +58893,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001627", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001628" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002256", "pred" : "is_a", @@ -59549,10 +58905,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002394", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000515" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001930", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001931" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002396", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001723" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001615", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001614" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0033674", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -59585,6 +58953,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001035" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001833", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001832" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001637", "pred" : "is_a", @@ -59593,6 +58965,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002285", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001712", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001713" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001942", "pred" : "is_a", @@ -59685,6 +59061,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000078", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002323" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002052", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001710", "pred" : "is_a", @@ -59701,6 +59081,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000308", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000309" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001192", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001194" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002254", "pred" : "subPropertyOf", @@ -59709,6 +59097,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000274", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001434" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000404", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000415" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015025", "pred" : "is_a", @@ -59729,14 +59121,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0007165", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0007154" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045021", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001408", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045021", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002608", "pred" : "subPropertyOf", @@ -59765,6 +59157,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001385" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000888", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000892" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002333", "pred" : "is_a", @@ -59777,6 +59173,18 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009966", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0025001", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0025002" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002051", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001614", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001615" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001472", "pred" : "is_a", @@ -59785,6 +59193,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0020000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000047" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001832", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001833" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048518", "pred" : "is_a", @@ -59805,6 +59217,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001639" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001759", "pred" : "is_a", @@ -59817,6 +59233,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000303", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002040", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002039" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002246", "pred" : "is_a", @@ -59841,6 +59261,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001844", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001843" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001723", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001724" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002105", "pred" : "is_a", @@ -59873,10 +59301,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000760", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001726", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001725" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001815" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002394", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002393" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002088", "pred" : "is_a", @@ -59909,6 +59345,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000516" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001171", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001172" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001360", "pred" : "is_a", @@ -59921,6 +59361,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000609", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000610" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002285", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002286" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001997", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000470" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", @@ -59933,6 +59381,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001260", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000951" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002043", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002042" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002297", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002298" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098590", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -59945,6 +59401,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001621", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000963", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000964" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002055", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002056" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002013", "pred" : "subPropertyOf", @@ -59957,6 +59421,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000639", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002038" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001749", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005006", "pred" : "is_a", @@ -59977,6 +59449,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001289", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001287" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000757", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000758" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001922", "pred" : "is_a", @@ -59993,14 +59469,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000642", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002014", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002013" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002629", "pred" : "subPropertyOf", @@ -60025,18 +59501,30 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002500" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000309", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000308" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001172", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001171" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000643", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001598" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002050", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002393", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002394" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002138", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002050", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045013", "pred" : "is_a", @@ -60057,6 +59545,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002100", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001714", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001715" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045026", "pred" : "is_a", @@ -60065,14 +59557,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001873", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000946", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002132", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000946", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051100", "pred" : "is_a", @@ -60097,6 +59589,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001605", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001835", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001834" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001468", "pred" : "is_a", @@ -60117,6 +59613,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001768", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002140", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002139" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001482", "pred" : "is_a", @@ -60129,6 +59629,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002104", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001823", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001824" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000299", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000300" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002380", "pred" : "is_a", @@ -60157,6 +59665,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000152" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001355", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001851", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -60173,6 +59685,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001914", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001912" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001628", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001627" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002526", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002491" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000308", "pred" : "is_a", @@ -60198,17 +59718,21 @@ "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0016020" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002042", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002043" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001923", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002212", "pred" : "subPropertyOf", @@ -60245,6 +59769,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002340", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002339" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000964", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000963" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002240", "pred" : "is_a", @@ -60257,6 +59785,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001288", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001287" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000613", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001201", "pred" : "is_a", @@ -60265,6 +59797,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000504", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000505" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900121", "pred" : "is_a", @@ -60273,10 +59809,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001168", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001020" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000516", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000513" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000423", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000056" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000758", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000757" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002450", "pred" : "is_a", @@ -60297,6 +59841,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002015", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002013" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002263", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002131", "pred" : "is_a", @@ -60321,6 +59869,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001580", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001690" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000769", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000770" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001725", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001726" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002414", "pred" : "is_a", @@ -60329,6 +59885,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001715", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000574" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001713", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001712" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002164", "pred" : "is_a", @@ -60345,6 +59905,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001604", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001603" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002031", "pred" : "is_a", @@ -60373,6 +59937,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002453", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001835" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002172", "pred" : "is_a", @@ -60397,6 +59965,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002262", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001931", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001930" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000037", "pred" : "is_a", @@ -60445,6 +60017,10 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000066", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000067" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001307" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", "pred" : "is_a", @@ -60461,6 +60037,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002282", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002504", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002527" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0044237", "pred" : "is_a", @@ -60485,6 +60065,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001549", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001550" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001349", "pred" : "is_a", @@ -60525,6 +60109,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002223", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000303", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001688", "pred" : "is_a", @@ -60589,18 +60177,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001552", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001457" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045051", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001323" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045073", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045051", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001323" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001739", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000689", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000690" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001543", "pred" : "is_a", @@ -60629,6 +60221,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001664", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002072", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002071" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002566", "pred" : "subPropertyOf", @@ -60653,22 +60249,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001950", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000944" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001417", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001416" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001538", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045058", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045037", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001761", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001767" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045037", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0016310", "pred" : "is_a", @@ -60721,6 +60325,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015002" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001635", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001636" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009893", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -60741,6 +60349,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045028", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000891" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000633", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000619" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000584", "pred" : "is_a", @@ -60753,14 +60365,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000626", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000634", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000626", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002370", "pred" : "is_a", @@ -60781,10 +60393,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000048" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000982", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000983" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002023", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002630" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001319", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001318" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0030000", "pred" : "is_a", @@ -60793,18 +60413,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002385", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001410" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000546", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000547" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002343", "pred" : "is_a", @@ -60817,6 +60441,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002392", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000304", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002198", "pred" : "is_a", @@ -60833,6 +60461,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002598", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002596" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001669", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001670" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", @@ -60853,6 +60485,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002098", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000642", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000651" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002305", "pred" : "is_a", @@ -60873,6 +60509,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002314", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002502" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000414", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002272", "pred" : "is_a", @@ -60941,6 +60581,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001464", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002071", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002072" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001575", "pred" : "is_a", @@ -60953,6 +60597,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002046", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002192", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002191" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001191", "pred" : "is_a", @@ -60993,6 +60641,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001988", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001416", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001417" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040025", "pred" : "is_a", @@ -61001,6 +60653,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000119" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001538" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001369", "pred" : "is_a", @@ -61009,6 +60665,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001695", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001779", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001778" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001987", "pred" : "is_a", @@ -61021,6 +60681,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002024", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002629" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000569", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000570" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001307", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001308" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0000000", "pred" : "is_a", @@ -61045,6 +60713,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001622", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001621" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001743", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001742" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002239", "pred" : "is_a", @@ -61101,6 +60777,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002425", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000644", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000645" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000582", "pred" : "is_a", @@ -61113,6 +60793,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002331", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002217" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002196", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002195" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001488", "pred" : "is_a", @@ -61129,6 +60813,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002333", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002075", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002074" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000983", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000982" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000570", "pred" : "is_a", @@ -61149,6 +60841,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002438", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000547", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000546" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001348", "pred" : "is_a", @@ -61177,6 +60873,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0098796", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0032991" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000415", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002294", "pred" : "is_a", @@ -61205,14 +60905,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0000052", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000053" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001311", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001310" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001553", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001551" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001311", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001310" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045043", "pred" : "is_a", @@ -61265,10 +60965,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001566" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002074", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002075" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002195", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002196" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001831", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001830" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045048", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001843", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001844" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001613", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001612" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045056", "pred" : "is_a", @@ -61281,6 +61001,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0031325", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0031323" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001625", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001624" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001461", "pred" : "is_a", @@ -61313,6 +61037,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000161", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002062" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0005013", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0005012" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001835", "pred" : "is_a", @@ -61385,6 +61113,10 @@ "sub" : "http://purl.obolibrary.org/obo/CARO_0000014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/CARO_0000003" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000610", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000608" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004032", "pred" : "subPropertyOf", @@ -61397,14 +61129,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002304", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000757", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000185" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002111", "pred" : "is_a", @@ -61413,6 +61145,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002230", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000402", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000414" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000984", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000985" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002096", "pred" : "is_a", @@ -61489,6 +61229,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040010", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000427", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002315", "pred" : "is_a", @@ -61501,6 +61245,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045035", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001655" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000644" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001445", "pred" : "is_a", @@ -61577,14 +61325,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001333", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045013", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001229", "pred" : "is_a", @@ -61641,22 +61389,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000375", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000040" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001636", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001635" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045049", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001193", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045054" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001193", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001258", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000954" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001830", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001831" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045023", "pred" : "is_a", @@ -61665,6 +61421,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002352", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001729" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001613" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", "pred" : "is_a", @@ -61673,6 +61433,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0043226", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0110165" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001624", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001625" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", "pred" : "is_a", @@ -61689,6 +61453,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001879", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0005012", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0005013" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000405", "pred" : "is_a", @@ -61765,18 +61533,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001832", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000651", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000642" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002041", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002129", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002316", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002129", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002436", "pred" : "is_a", @@ -61857,6 +61629,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000370", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001510", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001511" }, { "sub" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "pred" : "subPropertyOf", @@ -61901,6 +61677,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001409", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001897", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001896" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045054", "pred" : "is_a", @@ -61933,6 +61713,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001352", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001019" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001887" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002357", "pred" : "is_a", @@ -61945,10 +61729,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002461", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002165" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001764", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001765" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002051", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001777" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002533", "pred" : "is_a", @@ -61969,6 +61761,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000017", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001301" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000892", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000888" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045042", "pred" : "is_a", @@ -62021,6 +61817,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001459", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001460" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001813", "pred" : "is_a", @@ -62073,6 +61873,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002040", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001355" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000760", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000761" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000395", "pred" : "is_a", @@ -62113,6 +61917,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002437", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002527", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002504" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002076", "pred" : "is_a", @@ -62193,6 +62001,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001347", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001335" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001859" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001192", "pred" : "is_a", @@ -62249,10 +62061,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045045", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001741" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001749" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001951", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001886" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000336", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000331" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001278", "pred" : "is_a", @@ -62277,6 +62101,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001562", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000125" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001678", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001677" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001671", "pred" : "is_a", @@ -62293,6 +62121,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015021" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001896", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001897" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002217", "pred" : "inverseOf", @@ -62333,6 +62165,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001654", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001653" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045055", "pred" : "is_a", @@ -62345,10 +62181,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001545", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001412", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001411" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001763", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001760" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040026", "pred" : "is_a", @@ -62457,14 +62305,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002167", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001646" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002327", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002456", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002327", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000499", "pred" : "is_a", @@ -62493,6 +62341,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002336", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000760" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002039", "pred" : "is_a", @@ -62501,6 +62353,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001377", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001393" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000422", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000423" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002447", "pred" : "subPropertyOf", @@ -62577,6 +62433,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002191", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002192" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", @@ -62625,10 +62485,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040017", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001433" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001561", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001564" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001657", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001656" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001519", "pred" : "is_a", @@ -62665,6 +62533,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040022", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001318", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001319" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001621", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001622" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", @@ -62673,6 +62549,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002202", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002201" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001743" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", "pred" : "is_a", @@ -62689,6 +62569,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001779" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001887", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001885" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001899", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001898" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0023052", "pred" : "is_a", @@ -62701,6 +62589,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002241", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001979" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001362", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001716" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001604", "pred" : "is_a", @@ -62709,6 +62601,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002218", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000057" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001779" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002431", "pred" : "is_a", @@ -62737,6 +62633,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002422", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001788", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001790" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002213", "pred" : "inverseOf", @@ -62809,6 +62709,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002435", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000423", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000422" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002389", "pred" : "is_a", @@ -62845,6 +62749,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001477", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002491", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002526" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0031324", "pred" : "is_a", @@ -62905,10 +62813,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045045", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000688", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000695" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002432", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001821", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002112" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001548", "pred" : "is_a", @@ -62969,6 +62885,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001776" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001450", "pred" : "is_a", @@ -62977,6 +62897,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045089", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045088" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001898", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001899" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0000006", "pred" : "is_a", @@ -63037,6 +62961,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001305", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001306" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001919", "pred" : "is_a", @@ -63045,6 +62973,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002086", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002222" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001657" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", @@ -63061,14 +62993,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002324", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002323" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_1900121", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_1900120" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002253", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000407" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_1900121", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_1900120" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001886", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045065", "pred" : "is_a", @@ -63081,6 +63017,14 @@ "sub" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001511", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001510" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001765", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001764" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000763", "pred" : "is_a", @@ -63101,6 +63045,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001699", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000062" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000695", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000688" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000320", "pred" : "is_a", @@ -63117,6 +63065,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001314" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002304", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001412", "pred" : "is_a", @@ -63129,6 +63081,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001665", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000331", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000336" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000574" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001652", "pred" : "is_a", @@ -63177,6 +63137,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0065009", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0003674" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000487" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0032991", "pred" : "is_a", @@ -63185,10 +63149,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001189", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015003", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015004" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002144", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002327" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002481", "pred" : "is_a", @@ -63202,13 +63174,21 @@ "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002411" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001528", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001519" + "sub" : "http://purl.obolibrary.org/obo/PATO_0000464", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000463" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000585", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000584" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001331" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001528", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001519" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000018", "pred" : "is_a", @@ -63217,6 +63197,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001975", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001976" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015015", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002504", "pred" : "is_a", @@ -63289,6 +63273,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001676", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001663", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001664" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045068", "pred" : "is_a", @@ -63297,18 +63285,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001783", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001651", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001650" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001676" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002411", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002418" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001770", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001782", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000049" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001770", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0007165", "pred" : "is_a", @@ -63321,6 +63317,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002183", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001892" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002468", "pred" : "is_a", @@ -63349,6 +63349,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001760", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001763" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002539", "pred" : "is_a", @@ -63385,14 +63389,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000983", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000970" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001900", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001250", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000320" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001900", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000956", "pred" : "is_a", @@ -63405,6 +63409,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000117" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001553" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900122", "pred" : "is_a", @@ -63421,14 +63429,38 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001796", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001795" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001566", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001567" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001716", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001362" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000502" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001578", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001577" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001276", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000321" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001312", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001311" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002303", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000460", "pred" : "is_a", @@ -63437,6 +63469,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001423", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001372" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015028", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015027" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045078", "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", @@ -63445,6 +63481,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0031323", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0044237" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000344", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000345" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001787", "pred" : "is_a", @@ -63453,6 +63493,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000982", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000970" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000586", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000955", "pred" : "is_a", @@ -63513,6 +63557,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001504", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001502" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000573" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001579", "pred" : "is_a", @@ -63525,6 +63573,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001417", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015003" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002327", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001807", "pred" : "is_a", @@ -63569,6 +63625,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001533", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000019" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001650", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001651" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001651", "pred" : "is_a", @@ -63577,6 +63637,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002134", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001311", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001312" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000056", "pred" : "is_a", @@ -63609,10 +63673,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001927", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001795", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002496", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001783", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001782" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001553", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001554" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001901", "pred" : "is_a", @@ -63645,18 +63721,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002518", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001892", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001893" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0030545", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0098772" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0050001", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002196", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0050001", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002019", "pred" : "is_a", @@ -63721,18 +63801,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000701", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1902531", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009966" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001686", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001685" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", "pred" : "is_a", @@ -63741,6 +63825,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001577", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001578" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001275", "pred" : "is_a", @@ -63749,10 +63837,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001698", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001697" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002268", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002099", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002100" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001456", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001455" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000125", "pred" : "is_a", @@ -63773,6 +63873,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015026", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000890", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000891" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002630", "pred" : "is_a", @@ -63805,6 +63909,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001482", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015007" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000440", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002284", "pred" : "is_a", @@ -63845,6 +63953,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001199", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000587", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001525", "pred" : "is_a", @@ -63853,14 +63965,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001717", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001674", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002022", "pred" : "inverseOf", @@ -63941,6 +64053,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002235", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001500" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000345", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000344" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002214", "pred" : "is_a", @@ -63949,14 +64065,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0010646", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0050794" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001743", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001741" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001606", "pred" : "is_a", @@ -63985,6 +64101,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001954", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001199" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001411", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001412" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001856", "pred" : "is_a", @@ -64001,6 +64121,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045079", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001653", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001654" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002399", "pred" : "is_a", @@ -64065,10 +64189,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000588", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002100", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000967", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001689", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001688" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001052", "pred" : "is_a", @@ -64125,6 +64257,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_1902532", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009968" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001762", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001761" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001677", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001161", "pred" : "is_a", @@ -64133,6 +64273,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001544", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001545" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001314", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001313" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005024", "pred" : "is_a", @@ -64181,6 +64329,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000984", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000973" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002305", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0032092", "pred" : "is_a", @@ -64197,6 +64349,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001307", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001314" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000891", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000890" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001512", "pred" : "is_a", @@ -64217,6 +64373,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001538", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001861", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001959" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001429", "pred" : "is_a", @@ -64253,6 +64413,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040021", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000327", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000665" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001576", "pred" : "is_a", @@ -64277,6 +64441,10 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000467", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000462" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002411", "pred" : "is_a", @@ -64313,14 +64481,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009966", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0010646" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045076", - "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001943", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000951" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045076", + "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0031324", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", @@ -64333,6 +64501,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001782", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001501", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001701" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045067", "pred" : "is_a", @@ -64349,6 +64521,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001761", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001762" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001892", "pred" : "is_a", @@ -64373,14 +64549,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002205", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002194", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002226", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002194", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001912", "pred" : "is_a", @@ -64457,6 +64633,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000770", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000769" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002254", "pred" : "is_a", @@ -64485,14 +64665,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001264", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045086", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000403", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045086", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000321", "pred" : "is_a", @@ -64501,6 +64681,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045084" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001664", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001663" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001688", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001689" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001676", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001675" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001313", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001314" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001567", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001566" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001566", "pred" : "is_a", @@ -64513,6 +64713,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002353", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000460", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098772", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -64549,6 +64753,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000505", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000375", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000374" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", @@ -64609,6 +64817,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045063", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015011", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015010" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002521", "pred" : "is_a", @@ -64637,6 +64849,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001719", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015023", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015022" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002231", "pred" : "is_a", @@ -64674,33 +64890,41 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001547" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002405", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + "sub" : "http://purl.obolibrary.org/obo/PATO_0000387", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000386" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001874", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002405", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001290", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001753", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002534", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001753", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001535", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001533" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002123", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001535", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001533" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002300", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001432", "pred" : "is_a", @@ -64717,6 +64941,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001578", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001549" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045050", "pred" : "is_a", @@ -64729,6 +64957,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001698", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001683", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001684" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002428", "pred" : "is_a", @@ -64737,6 +64969,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002191", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002190" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001695", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001696" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001562", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001563" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048522", "pred" : "is_a", @@ -64773,6 +65013,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0003824", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0003674" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015010", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002165", "pred" : "is_a", @@ -64785,6 +65029,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002108", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000623" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001671", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001672" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045023", "pred" : "is_a", @@ -64813,6 +65061,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002036", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000690", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000689" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045005", "pred" : "is_a", @@ -64869,6 +65121,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002480", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001448" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000582", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000583" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000330", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000440" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000365", "pred" : "is_a", @@ -64913,18 +65173,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001296", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002008", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001454", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000085" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000632", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" + "sub" : "http://purl.obolibrary.org/obo/PATO_0000461", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000460" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002501", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000632", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002405", "pred" : "subPropertyOf", @@ -65017,6 +65285,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001524", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001520" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001857", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001355" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002513", "pred" : "is_a", @@ -65041,6 +65313,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001741" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001670", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001669" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001621", "pred" : "is_a", @@ -65057,14 +65333,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001887", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001886" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002535", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001754", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002535", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002090", "pred" : "subPropertyOf", @@ -65097,6 +65373,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001693" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", "pred" : "is_a", @@ -65109,6 +65389,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0048523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048519" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001485", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002452" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002143", "pred" : "is_a", @@ -65181,6 +65465,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002037", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000570", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000569" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001970", "pred" : "is_a", @@ -65197,6 +65485,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002041" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001596", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001472" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045024", "pred" : "is_a", @@ -65205,10 +65497,18 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009966" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001476", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002428", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002431" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001234", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001233" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001195", "pred" : "is_a", @@ -65233,6 +65533,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0120025", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/GO_0098590" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", "pred" : "is_a", @@ -65241,6 +65545,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000915" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000498", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000499" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000331", "pred" : "is_a", @@ -65265,6 +65573,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001905", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0002050" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000583", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000582" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002515", "pred" : "is_a", @@ -65277,6 +65589,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002524", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000595", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000596" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0007165", "pred" : "is_a", @@ -65357,30 +65673,50 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001316", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002302", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001654", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001652" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015025", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015024" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002168", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045092", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045090" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002149", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001788" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045092", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045090" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002254", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002255" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001782", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001783" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001459" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001685", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001686" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001455", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001456" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900122", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -65393,6 +65729,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0050896", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0008150" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001552", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001551" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040020", "pred" : "is_a", @@ -65401,6 +65741,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002417", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001697", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001698" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", "pred" : "is_a", @@ -65421,14 +65765,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001321", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", @@ -65517,6 +65861,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0023057" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001576", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001575" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001510", "pred" : "is_a", @@ -65545,6 +65893,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002290" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001588", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001587" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002301", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045090", "pred" : "is_a", @@ -65569,14 +65925,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000957", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000487", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000488" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005634", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043231" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000463", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000464" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002520", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000584", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000585" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000586", "pred" : "is_a", @@ -65585,6 +65953,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000499", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000498" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0015014", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0015015" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002224", "pred" : "is_a", @@ -65593,6 +65969,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001328", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001325" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000365", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000370" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030003", "pred" : "is_a", @@ -65605,6 +65985,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002630", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002578" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000596", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000595" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001889", "pred" : "is_a", @@ -65613,14 +65997,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001194", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002155", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002261", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002155", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001793", "pred" : "is_a", @@ -65685,6 +66069,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001697", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001551", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001552" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001671" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002156", "pred" : "is_a", @@ -65697,10 +66089,26 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001322", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001587", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001588" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001563", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001562" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001684", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001683" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001577", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001575", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001576" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001852", "pred" : "is_a", @@ -65729,6 +66137,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001680", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000918" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002112", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001821" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001801", "pred" : "is_a", @@ -65745,18 +66157,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001339", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000627", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000619", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000627", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001511", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001696", + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001695" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000367", "pred" : "is_a", @@ -65832,17 +66248,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000569", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000119" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002221", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002220" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", + "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002221", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002220" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000569", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000119" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", + "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { @@ -66336,17 +66752,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0003674" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] }, { @@ -66529,17 +66945,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010562", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010563", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0006793" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010563", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010562", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0006793" } ] }, { @@ -66935,17 +67351,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043085", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043086", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043086", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043085", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" } ] }, { @@ -67450,17 +67866,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051347", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051348", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0016740" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051348", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051347", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0016740" } ] }, { @@ -68017,17 +68433,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048584", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048585", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0050896" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048585", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048584", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0050896" } ] }, { @@ -68409,6 +68825,14 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000050", "allValuesFromEdges" : [ { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" @@ -68416,18 +68840,10 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" } ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002506", diff --git a/pato.obo b/pato.obo index 6f2be253..aff006be 100644 --- a/pato.obo +++ b/pato.obo @@ -26,6 +26,7 @@ id: PATO:0000001 name: quality alt_id: PATO:0000072 def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" [PATOC:GVG] +property_value: IAO:0000589 "quality (PATO)" xsd:string [Term] id: PATO:0000002 @@ -1721,7 +1722,6 @@ synonym: "abolished" EXACT [] synonym: "incomplete" RELATED [] is_a: PATO:0002052 ! decreased occurrence is_a: PATO:0002324 ! offset quality -relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal [Term] id: PATO:0000298 @@ -1736,7 +1736,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000004 ! mobility disjoint_from: PATO:0000300 ! immobile -relationship: is_opposite_of PATO:0000300 ! immobile [Term] id: PATO:0000300 @@ -1746,7 +1745,6 @@ subset: disposition_slim subset: value_slim synonym: "fixed" RELATED [] is_a: PATO:0000004 ! mobility -relationship: is_opposite_of PATO:0000299 ! mobile [Term] id: PATO:0000301 @@ -1767,9 +1765,6 @@ synonym: "fast speed" RELATED [] synonym: "high speed" EXACT [] is_a: PATO:0000008 ! speed is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000008 ! speed -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000304 ! decreased speed [Term] id: PATO:0000304 @@ -1780,9 +1775,6 @@ synonym: "slow" EXACT [] synonym: "slow speed" EXACT [] is_a: PATO:0000008 ! speed is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000008 ! speed -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000303 ! increased speed [Term] id: PATO:0000305 @@ -1805,7 +1797,6 @@ name: old def: "An age which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0000011 ! age -relationship: is_opposite_of PATO:0000309 ! young [Term] id: PATO:0000309 @@ -1813,7 +1804,6 @@ name: young def: "An age which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0000011 ! age -relationship: is_opposite_of PATO:0000308 ! old [Term] id: PATO:0000310 @@ -1931,7 +1921,6 @@ def: "A color brightness which is relatively low." [PATOC:MAH] subset: value_slim synonym: "dark" EXACT [] is_a: PATO:0000016 ! color brightness -relationship: is_opposite_of PATO:0000665 ! high brightness [Term] id: PATO:0000328 @@ -1941,7 +1930,6 @@ subset: value_slim synonym: "dull" RELATED [] synonym: "pale" EXACT [] is_a: PATO:0000017 ! color saturation -relationship: is_opposite_of PATO:0001229 ! high saturation [Term] id: PATO:0000329 @@ -1959,7 +1947,6 @@ subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0000060 ! spatial pattern -relationship: is_opposite_of PATO:0000440 ! regular spatial pattern [Term] id: PATO:0000331 @@ -1967,7 +1954,6 @@ name: discolored def: "A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color." [Dictionary.com:Dictionary.com] subset: value_slim is_a: PATO:0000019 ! color pattern -relationship: is_opposite_of PATO:0000336 ! colored [Term] id: PATO:0000333 @@ -1990,7 +1976,6 @@ def: "A color quality inhering in a bearer by virtue of the bearer's having colo subset: value_slim synonym: "pigmented" RELATED [] is_a: PATO:0000014 ! color -relationship: is_opposite_of PATO:0000331 ! discolored [Term] id: PATO:0000337 @@ -2040,7 +2025,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0000021 ! compatibility disjoint_from: PATO:0000345 ! incompatible -relationship: is_opposite_of PATO:0000345 ! incompatible [Term] id: PATO:0000345 @@ -2050,7 +2034,6 @@ subset: disposition_slim subset: relational_slim subset: value_slim is_a: PATO:0000021 ! compatibility -relationship: is_opposite_of PATO:0000344 ! compatible [Term] id: PATO:0000346 @@ -2153,7 +2136,6 @@ name: down def: "A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction -relationship: is_opposite_of PATO:0000370 ! up [Term] id: PATO:0000366 @@ -2185,7 +2167,6 @@ name: up def: "A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction -relationship: is_opposite_of PATO:0000365 ! down [Term] id: PATO:0000371 @@ -2211,9 +2192,6 @@ subset: value_slim synonym: "long distance" RELATED [] is_a: PATO:0000040 ! distance is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000040 ! distance -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000375 ! decreased distance [Term] id: PATO:0000375 @@ -2224,9 +2202,6 @@ subset: value_slim synonym: "short distance" RELATED [] is_a: PATO:0000040 ! distance is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000040 ! distance -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000374 ! increased distance [Term] id: PATO:0000376 @@ -2258,9 +2233,6 @@ synonym: "frequent" RELATED [] synonym: "high frequency" EXACT [] is_a: PATO:0000044 ! frequency is_a: PATO:0000912 ! increased rate -intersection_of: PATO:0000044 ! frequency -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000381 ! decreased frequency [Term] id: PATO:0000381 @@ -2272,9 +2244,6 @@ synonym: "infrequent" RELATED [] synonym: "low frequency" EXACT [] is_a: PATO:0000044 ! frequency is_a: PATO:0000911 ! decreased rate -intersection_of: PATO:0000044 ! frequency -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000380 ! increased frequency [Term] id: PATO:0000382 @@ -2314,9 +2283,6 @@ synonym: "impenetrable" RELATED [] synonym: "tough" RELATED [] is_a: PATO:0000048 ! hardness is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000048 ! hardness -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000387 ! soft [Term] id: PATO:0000387 @@ -2327,9 +2293,6 @@ subset: mpath_slim subset: value_slim is_a: PATO:0000048 ! hardness is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000048 ! hardness -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000386 ! hard [Term] id: PATO:0000388 @@ -2344,7 +2307,6 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0001309 ! duration -relationship: is_opposite_of PATO:0001863 ! chronic [Term] id: PATO:0000390 @@ -2430,7 +2392,6 @@ synonym: "ramified" EXACT [] synonym: "ramiform" EXACT [] is_a: PATO:0002009 ! branchiness disjoint_from: PATO:0000414 ! unbranched -relationship: is_opposite_of PATO:0000414 ! unbranched [Term] id: PATO:0000403 @@ -2455,7 +2416,6 @@ synonym: "helicoidal" RELATED [] synonym: "helix-shaped" RELATED [] synonym: "spiral" EXACT [] is_a: PATO:0001794 ! coiling -relationship: is_opposite_of PATO:0000415 ! uncoiled [Term] id: PATO:0000405 @@ -2534,7 +2494,6 @@ subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0002009 ! branchiness -relationship: is_opposite_of PATO:0000402 ! branched [Term] id: PATO:0000415 @@ -2544,7 +2503,6 @@ subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0001794 ! coiling -relationship: is_opposite_of PATO:0000404 ! coiled [Term] id: PATO:0000416 @@ -2573,7 +2531,6 @@ def: "A nutritional quality inhering in a bearer by virtue of the bearer's inabi subset: disposition_slim subset: value_slim is_a: PATO:0000056 ! trophic quality -relationship: is_opposite_of PATO:0000423 ! prototrophic [Term] id: PATO:0000423 @@ -2582,7 +2539,6 @@ def: "A nutritional quality inhering in a bearer by virtue of the bearer's abili subset: disposition_slim subset: value_slim is_a: PATO:0000056 ! trophic quality -relationship: is_opposite_of PATO:0000422 ! auxotrophic [Term] id: PATO:0000424 @@ -2603,7 +2559,6 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence -relationship: is_opposite_of PATO:0000428 ! sporadic [Term] id: PATO:0000428 @@ -2613,7 +2568,6 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence -relationship: is_opposite_of PATO:0000427 ! recurrent [Term] id: PATO:0000430 @@ -2667,7 +2621,6 @@ subset: value_slim synonym: "constant" RELATED [] synonym: "uniform" EXACT [] is_a: PATO:0001303 ! variability -relationship: is_opposite_of PATO:0001227 ! variant [Term] id: PATO:0000439 @@ -2682,7 +2635,6 @@ subset: mpath_slim subset: relational_slim subset: value_slim is_a: PATO:0000060 ! spatial pattern -relationship: is_opposite_of PATO:0000330 ! irregular spatial pattern [Term] id: PATO:0000441 @@ -2811,7 +2763,6 @@ synonym: "atypia" RELATED [] synonym: "atypical" RELATED [] synonym: "defective" RELATED [] is_a: PATO:0000069 ! deviation(from_normal) -relationship: is_opposite_of PATO:0000461 ! normal [Term] id: PATO:0000461 @@ -2822,7 +2773,6 @@ subset: mpath_slim subset: value_slim synonym: "average" RELATED [] is_a: PATO:0000068 ! qualitative -relationship: is_opposite_of PATO:0000460 ! abnormal [Term] id: PATO:0000462 @@ -2837,7 +2787,6 @@ synonym: "absence" EXACT [] synonym: "absent from organism" EXACT [] is_a: PATO:0000070 ! amount disjoint_from: PATO:0000467 ! present -relationship: is_opposite_of PATO:0000467 ! present relationship: reciprocal_of PATO:0001558 ! lacking processual parts relationship: reciprocal_of PATO:0002000 ! lacks all parts of type @@ -2849,7 +2798,6 @@ subset: mpath_slim subset: value_slim synonym: "distinct" RELATED [] is_a: PATO:0001998 ! conspicuousness -relationship: is_opposite_of PATO:0000464 ! inconspicuous [Term] id: PATO:0000464 @@ -2859,7 +2807,6 @@ subset: mpath_slim subset: value_slim synonym: "faint" RELATED [] is_a: PATO:0001998 ! conspicuousness -relationship: is_opposite_of PATO:0000463 ! conspicuous [Term] id: PATO:0000465 @@ -2879,7 +2826,6 @@ subset: absent_slim subset: value_slim synonym: "present in organism" RELATED [] is_a: PATO:0000070 ! amount -relationship: is_opposite_of PATO:0000462 ! absent [Term] id: PATO:0000469 @@ -2900,9 +2846,6 @@ synonym: "present in greater numbers in organism" EXACT [] synonym: "supernumerary" EXACT [] is_a: PATO:0000467 ! present is_a: PATO:0002300 ! increased quality -intersection_of: PATO:0000070 ! amount -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001997 ! decreased amount [Term] id: PATO:0000471 @@ -2994,7 +2937,6 @@ subset: value_slim synonym: "responsive" EXACT [] is_a: PATO:0000077 ! response to disjoint_from: PATO:0000488 ! unresponsive to -relationship: is_opposite_of PATO:0000488 ! unresponsive to [Term] id: PATO:0000488 @@ -3005,7 +2947,6 @@ subset: relational_slim subset: value_slim synonym: "unresponsive" EXACT [] is_a: PATO:0000077 ! response to -relationship: is_opposite_of PATO:0000487 ! responsive to [Term] id: PATO:0000489 @@ -3066,9 +3007,6 @@ synonym: "prolonged period" RELATED [] synonym: "slow time" RELATED [] is_a: PATO:0001309 ! duration is_a: PATO:0002304 ! increased process quality -intersection_of: PATO:0001309 ! duration -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000499 ! decreased duration [Term] id: PATO:0000499 @@ -3083,9 +3021,6 @@ synonym: "low period" EXACT [] synonym: "shortened period" EXACT [] is_a: PATO:0001309 ! duration is_a: PATO:0002302 ! decreased process quality -intersection_of: PATO:0001309 ! duration -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000498 ! increased duration [Term] id: PATO:0000500 @@ -3122,7 +3057,6 @@ name: arrhythmic def: "A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm." [PATOC:GVG] subset: value_slim is_a: PATO:0000078 ! rhythm quality -relationship: is_opposite_of PATO:0000505 ! rhythmic [Term] id: PATO:0000505 @@ -3130,7 +3064,6 @@ name: rhythmic def: "A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm." [PATOC:GVG] subset: value_slim is_a: PATO:0000078 ! rhythm quality -relationship: is_opposite_of PATO:0000504 ! arrhythmic [Term] id: PATO:0000506 @@ -3177,7 +3110,6 @@ subset: value_slim synonym: "insensitive" EXACT [] synonym: "resistant" RELATED [] is_a: PATO:0000085 ! sensitivity toward -relationship: is_opposite_of PATO:0000516 ! sensitive toward [Term] id: PATO:0000514 @@ -3204,7 +3136,6 @@ subset: relational_slim subset: value_slim synonym: "sensitive" EXACT [] is_a: PATO:0000085 ! sensitivity toward -relationship: is_opposite_of PATO:0000513 ! insensitive toward [Term] id: PATO:0000517 @@ -3360,7 +3291,6 @@ subset: value_slim synonym: "photoresistant" RELATED [] is_a: PATO:0000927 ! photosensitivity disjoint_from: PATO:0000547 ! photosensitive -relationship: is_opposite_of PATO:0000547 ! photosensitive [Term] id: PATO:0000547 @@ -3369,7 +3299,6 @@ def: "A photosensitivity quality inhering in a bearer by virtue of the bearer's subset: disposition_slim subset: value_slim is_a: PATO:0000927 ! photosensitivity -relationship: is_opposite_of PATO:0000546 ! photoinsensitive [Term] id: PATO:0000548 @@ -3486,9 +3415,6 @@ subset: value_slim synonym: "short" RELATED [] is_a: PATO:0000119 ! height is_a: PATO:0000587 ! decreased size -intersection_of: PATO:0000119 ! height -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000570 ! increased height [Term] id: PATO:0000570 @@ -3498,9 +3424,6 @@ subset: value_slim synonym: "tall" RELATED [] is_a: PATO:0000119 ! height is_a: PATO:0000586 ! increased size -intersection_of: PATO:0000119 ! height -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000569 ! decreased height [Term] id: PATO:0000571 @@ -3520,9 +3443,6 @@ subset: value_slim synonym: "long" EXACT [] is_a: PATO:0000122 ! length is_a: PATO:0000586 ! increased size -intersection_of: PATO:0000122 ! length -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000574 ! decreased length [Term] id: PATO:0000574 @@ -3534,9 +3454,6 @@ synonym: "shortened" RELATED [] synonym: "stubby" RELATED [] is_a: PATO:0000122 ! length is_a: PATO:0000587 ! decreased size -intersection_of: PATO:0000122 ! length -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000573 ! increased length [Term] id: PATO:0000575 @@ -3572,9 +3489,6 @@ synonym: "heavy" EXACT [] synonym: "high weight" EXACT [] is_a: PATO:0000128 ! weight is_a: PATO:0002245 ! increased force -intersection_of: PATO:0000128 ! weight -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000583 ! decreased weight [Term] id: PATO:0000583 @@ -3585,9 +3499,6 @@ synonym: "light weight" EXACT [] synonym: "low weight" EXACT [] is_a: PATO:0000128 ! weight is_a: PATO:0002246 ! decreased force -intersection_of: PATO:0000128 ! weight -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000582 ! increased weight [Term] id: PATO:0000584 @@ -3597,7 +3508,6 @@ subset: mpath_slim subset: value_slim synonym: "hypertrophy" NARROW [] is_a: PATO:0000595 ! increased volume -relationship: is_opposite_of PATO:0000585 ! hypotrophic [Term] id: PATO:0000585 @@ -3608,7 +3518,6 @@ subset: mpath_slim subset: value_slim synonym: "shrunken" EXACT [] is_a: PATO:0000596 ! decreased volume -relationship: is_opposite_of PATO:0000584 ! hypertrophic [Term] id: PATO:0000586 @@ -3623,9 +3532,6 @@ synonym: "great" RELATED [] synonym: "large" RELATED [] is_a: PATO:0000117 ! size is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000117 ! size -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000587 ! decreased size [Term] id: PATO:0000587 @@ -3639,9 +3545,6 @@ synonym: "tiny" RELATED [] synonym: "underdeveloped" NARROW [] is_a: PATO:0000117 ! size is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000117 ! size -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000586 ! increased size [Term] id: PATO:0000588 @@ -3673,9 +3576,6 @@ synonym: "thick" RELATED [] synonym: "thickened" EXACT [] is_a: PATO:0000586 ! increased size is_a: PATO:0000915 ! thickness -intersection_of: PATO:0000915 ! thickness -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000592 ! decreased thickness [Term] id: PATO:0000592 @@ -3688,9 +3588,6 @@ synonym: "slender" RELATED [] synonym: "thin" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0000915 ! thickness -intersection_of: PATO:0000915 ! thickness -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000591 ! increased thickness [Term] id: PATO:0000593 @@ -3712,9 +3609,6 @@ synonym: "high volume" EXACT [] synonym: "large volume" RELATED [] is_a: PATO:0000586 ! increased size is_a: PATO:0000918 ! volume -intersection_of: PATO:0000918 ! volume -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000596 ! decreased volume [Term] id: PATO:0000596 @@ -3726,9 +3620,6 @@ synonym: "low volume" EXACT [] synonym: "small volume" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0000918 ! volume -intersection_of: PATO:0000918 ! volume -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000595 ! increased volume [Term] id: PATO:0000597 @@ -3748,9 +3639,6 @@ subset: value_slim synonym: "narrow" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0000921 ! width -intersection_of: PATO:0000921 ! width -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000600 ! increased width [Term] id: PATO:0000600 @@ -3762,9 +3650,6 @@ synonym: "wide" RELATED [] synonym: "wide/broad" RELATED [] is_a: PATO:0000586 ! increased size is_a: PATO:0000921 ! width -intersection_of: PATO:0000921 ! width -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000599 ! decreased width [Term] id: PATO:0000601 @@ -3811,7 +3696,6 @@ subset: value_slim synonym: "blocked" RELATED [] is_a: PATO:0000136 ! closure disjoint_from: PATO:0000610 ! open -relationship: is_opposite_of PATO:0000610 ! open [Term] id: PATO:0000609 @@ -3826,7 +3710,6 @@ name: open def: "A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view." [answers.com:answers.com] subset: value_slim is_a: PATO:0000136 ! closure -relationship: is_opposite_of PATO:0000608 ! closed [Term] id: PATO:0000611 @@ -3844,7 +3727,6 @@ name: disoriented def: "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation." [PATOC:GVG] subset: value_slim is_a: PATO:0000330 ! irregular spatial pattern -relationship: is_opposite_of PATO:0000614 ! oriented [Term] id: PATO:0000614 @@ -3852,7 +3734,6 @@ name: oriented def: "A pattern where all the repeated elements are oriented in the same direction." [PATOC:MAH] subset: value_slim is_a: PATO:0000440 ! regular spatial pattern -relationship: is_opposite_of PATO:0000613 ! disoriented [Term] id: PATO:0000615 @@ -3895,7 +3776,6 @@ name: crowded def: "A positional quality inhering in a bearer by virtue of the bearer's being overfilled." [WordNet:WordNet] subset: value_slim is_a: PATO:0000140 ! position -relationship: is_opposite_of PATO:0000633 ! uncrowded [Term] id: PATO:0000620 @@ -4013,7 +3893,6 @@ name: uncrowded def: "A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled." [PATOC:GVG] subset: value_slim is_a: PATO:0000060 ! spatial pattern -relationship: is_opposite_of PATO:0000619 ! crowded [Term] id: PATO:0000634 @@ -4064,7 +3943,6 @@ is_a: PATO:0002037 ! degeneration disjoint_from: PATO:0001623 ! atrophied disjoint_from: PATO:0002038 ! non-degenerate relationship: has_part PATO:0000585 ! hypotrophic -relationship: is_opposite_of PATO:0002038 ! non-degenerate [Term] id: PATO:0000640 @@ -4093,7 +3971,6 @@ synonym: "fused to" EXACT [] synonym: "joined with" RELATED [] synonym: "merged with" RELATED [] is_a: PATO:0000141 ! structure -relationship: is_opposite_of PATO:0000651 ! unfused from [Term] id: PATO:0000643 @@ -4113,7 +3990,6 @@ subset: value_slim synonym: "hyperplasia" EXACT [] synonym: "overdeveloped" RELATED [] is_a: PATO:0000586 ! increased size -relationship: is_opposite_of PATO:0000645 ! hypoplastic [Term] id: PATO:0000645 @@ -4126,7 +4002,6 @@ synonym: "hypoplasia" EXACT [] synonym: "underdeveloped" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0002290 ! aplastic/hypoplastic -relationship: is_opposite_of PATO:0000644 ! hyperplastic [Term] id: PATO:0000646 @@ -4161,7 +4036,6 @@ subset: relational_slim subset: value_slim synonym: "unfused" EXACT [] is_a: PATO:0000141 ! structure -relationship: is_opposite_of PATO:0000642 ! fused with [Term] id: PATO:0000652 @@ -4235,7 +4109,6 @@ def: "A color brightness which is relatively high." [PATOC:MAH] subset: value_slim synonym: "light" EXACT [] is_a: PATO:0000016 ! color brightness -relationship: is_opposite_of PATO:0000327 ! low brightness [Term] id: PATO:0000666 @@ -4343,7 +4216,6 @@ name: asynchronous def: "A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase." [WordNet:WordNet] subset: value_slim is_a: PATO:0000057 ! occurrence -relationship: is_opposite_of PATO:0000695 ! synchronous [Term] id: PATO:0000689 @@ -4353,7 +4225,6 @@ def: "A quality of a single process inhering in a bearer by virtue of the bearer subset: value_slim synonym: "uninterrupted" EXACT [] is_a: PATO:0000057 ! occurrence -relationship: is_opposite_of PATO:0000690 ! discontinuous [Term] id: PATO:0000690 @@ -4364,7 +4235,6 @@ subset: value_slim synonym: "intermittent" RELATED [] synonym: "interrupted" EXACT [] is_a: PATO:0000057 ! occurrence -relationship: is_opposite_of PATO:0000689 ! continuous [Term] id: PATO:0000692 @@ -4396,7 +4266,6 @@ name: synchronous def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase." [PATOC:GVG] subset: value_slim is_a: PATO:0000057 ! occurrence -relationship: is_opposite_of PATO:0000688 ! asynchronous [Term] id: PATO:0000696 @@ -4427,7 +4296,6 @@ subset: mpath_slim subset: value_slim synonym: "coarse" EXACT [] is_a: PATO:0000150 ! texture -relationship: is_opposite_of PATO:0000701 ! smooth [Term] id: PATO:0000701 @@ -4436,7 +4304,6 @@ def: "A texture quality inhering in a bearer by virtue of the bearer's processin subset: mpath_slim subset: value_slim is_a: PATO:0000150 ! texture -relationship: is_opposite_of PATO:0000700 ! rough [Term] id: PATO:0000702 @@ -4469,9 +4336,6 @@ subset: value_slim synonym: "high threshold" EXACT [] is_a: PATO:0000152 ! threshold is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000152 ! threshold -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000708 ! decreased threshold [Term] id: PATO:0000708 @@ -4484,9 +4348,6 @@ subset: value_slim synonym: "low threshold" EXACT [] is_a: PATO:0000152 ! threshold is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000152 ! threshold -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000706 ! increased threshold [Term] id: PATO:0000710 @@ -4726,7 +4587,6 @@ def: "A balance quality inhering in a bearer by virtue of the bearer's having ba subset: value_slim is_a: PATO:0000185 ! balance disjoint_from: PATO:0000758 ! unbalanced -relationship: is_opposite_of PATO:0000758 ! unbalanced [Term] id: PATO:0000758 @@ -4734,7 +4594,6 @@ name: unbalanced def: "A balance quality inhering in a bearer by virtue of the bearer's lacking balance." [PATOC:GVG] subset: value_slim is_a: PATO:0000185 ! balance -relationship: is_opposite_of PATO:0000757 ! balanced [Term] id: PATO:0000759 @@ -4753,9 +4612,6 @@ subset: value_slim synonym: "hyperactive" EXACT [] is_a: PATO:0001707 ! behavioural active is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001707 ! behavioural active -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000761 ! decreased behavioural activity [Term] id: PATO:0000761 @@ -4765,9 +4621,6 @@ subset: value_slim synonym: "hypoactive" EXACT [] is_a: PATO:0001707 ! behavioural active is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001707 ! behavioural active -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000760 ! increased behavioural activity [Term] id: PATO:0000762 @@ -4832,7 +4685,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000188 ! coordination disjoint_from: PATO:0000770 ! uncoordinated -relationship: is_opposite_of PATO:0000770 ! uncoordinated [Term] id: PATO:0000770 @@ -4841,7 +4693,6 @@ def: "A coordination quality of inhering in a bearer by virtue of the bearer's l subset: disposition_slim subset: value_slim is_a: PATO:0000188 ! coordination -relationship: is_opposite_of PATO:0000769 ! coordinated [Term] id: PATO:0000771 @@ -5449,7 +5300,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000277 ! female fertility disjoint_from: PATO:0000892 ! female sterile -relationship: is_opposite_of PATO:0000892 ! female sterile [Term] id: PATO:0000889 @@ -5465,7 +5315,6 @@ subset: value_slim synonym: "male infertile" RELATED [] is_a: PATO:0000956 ! sterile disjoint_from: PATO:0000891 ! male fertile -relationship: is_opposite_of PATO:0000891 ! male fertile [Term] id: PATO:0000891 @@ -5474,7 +5323,6 @@ def: "A male fertility quality inhering in a male by virtue of the bearer's bein subset: disposition_slim subset: value_slim is_a: PATO:0000279 ! male fertility -relationship: is_opposite_of PATO:0000890 ! male sterile [Term] id: PATO:0000892 @@ -5484,7 +5332,6 @@ subset: disposition_slim subset: value_slim synonym: "female infertile" RELATED [] is_a: PATO:0000956 ! sterile -relationship: is_opposite_of PATO:0000888 ! female fertile [Term] id: PATO:0000893 @@ -5589,9 +5436,6 @@ subset: value_slim synonym: "slow rate" EXACT [] is_a: PATO:0000161 ! rate is_a: PATO:0002302 ! decreased process quality -intersection_of: PATO:0000161 ! rate -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000912 ! increased rate [Term] id: PATO:0000912 @@ -5603,9 +5447,6 @@ synonym: "fast rate" EXACT [] synonym: "high rate" EXACT [] is_a: PATO:0000161 ! rate is_a: PATO:0002304 ! increased process quality -intersection_of: PATO:0000161 ! rate -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000911 ! decreased rate [Term] id: PATO:0000913 @@ -5753,7 +5594,6 @@ subset: mpath_slim subset: value_slim is_a: PATO:0002264 ! organization quality disjoint_from: PATO:0000938 ! organized -relationship: is_opposite_of PATO:0000938 ! organized [Term] id: PATO:0000938 @@ -5762,7 +5602,6 @@ def: "A structural quality inhering in a bearer by virtue of the bearer's exhibi subset: mpath_slim subset: value_slim is_a: PATO:0002264 ! organization quality -relationship: is_opposite_of PATO:0000937 ! disorganized [Term] id: PATO:0000939 @@ -5893,7 +5732,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000274 ! fertility disjoint_from: PATO:0000956 ! sterile -relationship: is_opposite_of PATO:0000956 ! sterile [Term] id: PATO:0000956 @@ -5902,7 +5740,6 @@ def: "A fertility quality inhering in a bearer by virtue of the bearer's being i subset: disposition_slim subset: value_slim is_a: PATO:0000274 ! fertility -relationship: is_opposite_of PATO:0000955 ! fertile [Term] id: PATO:0000957 @@ -5946,7 +5783,6 @@ synonym: "clouding" RELATED [] synonym: "cloudy" RELATED [] synonym: "non-transparent" EXACT [] is_a: PATO:0000957 ! opacity -relationship: is_opposite_of PATO:0000964 ! transparent [Term] id: PATO:0000964 @@ -5957,7 +5793,6 @@ subset: value_slim synonym: "clear" EXACT [] synonym: "hyaline" EXACT [] is_a: PATO:0000957 ! opacity -relationship: is_opposite_of PATO:0000963 ! opaque [Term] id: PATO:0000965 @@ -6078,7 +5913,6 @@ subset: value_slim synonym: "porous" RELATED [] is_a: PATO:0000970 ! permeability disjoint_from: PATO:0000983 ! impermeable -relationship: is_opposite_of PATO:0000983 ! impermeable [Term] id: PATO:0000983 @@ -6087,7 +5921,6 @@ def: "A permeability quality inhering in a bearer by virtue of the bearer's bein subset: disposition_slim subset: value_slim is_a: PATO:0000970 ! permeability -relationship: is_opposite_of PATO:0000982 ! permeable [Term] id: PATO:0000984 @@ -6097,7 +5930,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000973 ! porosity disjoint_from: PATO:0000985 ! non-porous -relationship: is_opposite_of PATO:0000985 ! non-porous [Term] id: PATO:0000985 @@ -6106,7 +5938,6 @@ def: "A porosity quality inhering in a bearer by virtue of the bearer's being in subset: disposition_slim subset: value_slim is_a: PATO:0000973 ! porosity -relationship: is_opposite_of PATO:0000984 ! porous [Term] id: PATO:0000986 @@ -6454,7 +6285,6 @@ subset: disposition_slim subset: relational_slim synonym: "susceptibility" EXACT [] is_a: PATO:0000085 ! sensitivity toward -relationship: is_opposite_of PATO:0001046 ! resistance to [Term] id: PATO:0001044 @@ -6476,7 +6306,6 @@ subset: relational_slim subset: scalar_slim synonym: "resistance" EXACT [] is_a: PATO:0001995 ! organismal quality -relationship: is_opposite_of PATO:0001043 ! susceptibility toward [Term] id: PATO:0001047 @@ -7028,7 +6857,6 @@ subset: value_slim synonym: "susceptible" EXACT [] is_a: PATO:0001043 ! susceptibility toward disjoint_from: PATO:0001153 ! insusceptible toward -relationship: is_opposite_of PATO:0001153 ! insusceptible toward [Term] id: PATO:0001153 @@ -7039,7 +6867,6 @@ subset: relational_slim subset: value_slim synonym: "insusceptible" EXACT [] is_a: PATO:0001043 ! susceptibility toward -relationship: is_opposite_of PATO:0001152 ! susceptible toward [Term] id: PATO:0001154 @@ -7047,7 +6874,6 @@ name: elongated def: "A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width." [WordNet:WordNet] subset: value_slim is_a: PATO:0000052 ! shape -relationship: is_opposite_of PATO:0002364 ! shortened [Term] id: PATO:0001155 @@ -7099,9 +6925,6 @@ subset: value_slim synonym: "high concentration" EXACT [] is_a: PATO:0001159 ! concentrated is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001159 ! concentrated -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001163 ! decreased concentration [Term] id: PATO:0001163 @@ -7112,9 +6935,6 @@ subset: value_slim synonym: "low concentration" EXACT [] is_a: PATO:0001159 ! concentrated is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001159 ! concentrated -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001162 ! increased concentration [Term] id: PATO:0001164 @@ -7141,7 +6961,6 @@ def: "A structural quality inhering in a bearer by virtue of the bearer being ha subset: value_slim is_a: PATO:0001020 ! damage disjoint_from: PATO:0001168 ! undamaged -relationship: is_opposite_of PATO:0001168 ! undamaged [Term] id: PATO:0001168 @@ -7149,7 +6968,6 @@ name: undamaged def: "A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled." [WordNet:WordNet] subset: value_slim is_a: PATO:0001020 ! damage -relationship: is_opposite_of PATO:0001167 ! damaged [Term] id: PATO:0001170 @@ -7165,7 +6983,6 @@ subset: mpath_slim subset: value_slim is_a: PATO:0001031 ! elasticity disjoint_from: PATO:0001172 ! inelastic -relationship: is_opposite_of PATO:0001172 ! inelastic [Term] id: PATO:0001172 @@ -7175,7 +6992,6 @@ subset: disposition_slim subset: mpath_slim subset: value_slim is_a: PATO:0001031 ! elasticity -relationship: is_opposite_of PATO:0001171 ! elastic [Term] id: PATO:0001173 @@ -7306,9 +7122,6 @@ synonym: "hyperresponsive" EXACT [] synonym: "increased responsivity" EXACT [] is_a: PATO:0000487 ! responsive to is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000487 ! responsive to -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001194 ! hyporesponsive to [Term] id: PATO:0001193 @@ -7331,9 +7144,6 @@ synonym: "decreased responsivity" EXACT [] synonym: "hyporesponsive" EXACT [] is_a: PATO:0000487 ! responsive to is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000487 ! responsive to -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001192 ! hyperresponsive to [Term] id: PATO:0001195 @@ -7415,7 +7225,6 @@ subset: mpath_slim subset: value_slim synonym: "serrate" EXACT [] is_a: PATO:0001976 ! serration -relationship: is_opposite_of PATO:0001975 ! unserrated [Term] id: PATO:0001207 @@ -7523,7 +7332,6 @@ subset: relational_slim subset: value_slim synonym: "variable" EXACT [] is_a: PATO:0001303 ! variability -relationship: is_opposite_of PATO:0000438 ! invariant [Term] id: PATO:0001228 @@ -7538,7 +7346,6 @@ subset: value_slim synonym: "bright" EXACT [] synonym: "vivid" RELATED [] is_a: PATO:0000017 ! color saturation -relationship: is_opposite_of PATO:0000328 ! low saturation [Term] id: PATO:0001230 @@ -7568,7 +7375,6 @@ synonym: "dorsal" EXACT [] synonym: "posterior_to (human torso)" EXACT [] synonym: "superior_to (human head)" EXACT [] is_a: PATO:0000140 ! position -relationship: is_opposite_of PATO:0001234 ! distal to [Term] id: PATO:0001234 @@ -7579,7 +7385,6 @@ subset: relational_slim subset: value_slim synonym: "distal" EXACT [] is_a: PATO:0000140 ! position -relationship: is_opposite_of PATO:0001233 ! dorsal to [Term] id: PATO:0001235 @@ -8101,8 +7906,8 @@ id: PATO:0001304 name: variability of temperature def: "A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change." [PATO:GVG] subset: attribute_slim -intersection_of: PATO:0001303 ! variability -intersection_of: towards PATO:0000146 ! temperature +is_a: PATO:0001303 ! variability +relationship: towards PATO:0000146 ! temperature [Term] id: PATO:0001305 @@ -8114,9 +7919,6 @@ synonym: "high temperature" EXACT [] synonym: "hot" EXACT [] is_a: PATO:0000146 ! temperature is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000146 ! temperature -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001306 ! decreased temperature [Term] id: PATO:0001306 @@ -8128,9 +7930,6 @@ synonym: "cold" EXACT [] synonym: "low temperature" EXACT [] is_a: PATO:0000146 ! temperature is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000146 ! temperature -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001305 ! increased temperature [Term] id: PATO:0001307 @@ -8138,9 +7937,8 @@ name: decreased variability of temperature def: "A variability of temperature which is relatively low." [PATOC:GVG] subset: value_slim synonym: "low variability of temperature" EXACT [] -intersection_of: PATO:0001314 ! variant temperature -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001308 ! increased variability of temperature +is_a: PATO:0001314 ! variant temperature +is_a: PATO:0002301 ! decreased quality [Term] id: PATO:0001308 @@ -8148,9 +7946,8 @@ name: increased variability of temperature def: "A variability of temperature which is relatively high." [PATOC:GVG] subset: value_slim synonym: "high variability of temperature" EXACT [] -intersection_of: PATO:0001314 ! variant temperature -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001307 ! decreased variability of temperature +is_a: PATO:0001314 ! variant temperature +is_a: PATO:0002300 ! increased quality [Term] id: PATO:0001309 @@ -8178,9 +7975,6 @@ def: "A duration of temperature which is lesser relative to the normal or averag subset: value_slim is_a: PATO:0000499 ! decreased duration is_a: PATO:0001310 ! duration of temperature -intersection_of: PATO:0001310 ! duration of temperature -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001312 ! increased duration of temperature [Term] id: PATO:0001312 @@ -8190,9 +7984,6 @@ subset: value_slim synonym: "high duration of temperature" EXACT [] is_a: PATO:0000498 ! increased duration is_a: PATO:0001310 ! duration of temperature -intersection_of: PATO:0001310 ! duration of temperature -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001311 ! decreased duration of temperature [Term] id: PATO:0001313 @@ -8200,7 +7991,6 @@ name: invariant temperature def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature." [PATO:GVG] subset: relational_slim is_a: PATO:0001304 ! variability of temperature -relationship: is_opposite_of PATO:0001314 ! variant temperature [Term] id: PATO:0001314 @@ -8208,7 +7998,6 @@ name: variant temperature def: "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature." [PATO:GVG] subset: value_slim is_a: PATO:0001304 ! variability of temperature -relationship: is_opposite_of PATO:0001313 ! invariant temperature [Term] id: PATO:0001315 @@ -8240,7 +8029,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0000189 ! discrimination disjoint_from: PATO:0001319 ! discriminate -relationship: is_opposite_of PATO:0001319 ! discriminate [Term] id: PATO:0001319 @@ -8250,7 +8038,6 @@ subset: disposition_slim subset: relational_slim subset: value_slim is_a: PATO:0000189 ! discrimination -relationship: is_opposite_of PATO:0001318 ! indiscriminate [Term] id: PATO:0001320 @@ -8366,7 +8153,6 @@ def: "A quality of a process which ends later than the natural end time." [PATOC subset: value_slim is_a: PATO:0002304 ! increased process quality is_a: PATO:0002324 ! offset quality -relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal [Term] id: PATO:0001334 @@ -8540,7 +8326,6 @@ def: "A shape quality that obtains by virtue of the bearer having inward facing subset: cell_quality subset: value_slim is_a: PATO:0002005 ! concavity -relationship: is_opposite_of PATO:0001857 ! concave [Term] id: PATO:0001356 @@ -8601,7 +8386,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001662 ! fragility disjoint_from: PATO:0001716 ! non-fragile -relationship: is_opposite_of PATO:0001716 ! non-fragile [Term] id: PATO:0001364 @@ -8997,7 +8781,6 @@ name: structured def: "A structural quality inhering in a bearer by virtue of the bearer's having distinct structure." [PATOC:GVG] subset: value_slim is_a: PATO:0000141 ! structure -relationship: is_opposite_of PATO:0001412 ! unstructured [Term] id: PATO:0001412 @@ -9005,7 +8788,6 @@ name: unstructured def: "A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure." [PATOC:GVG] subset: value_slim is_a: PATO:0000141 ! structure -relationship: is_opposite_of PATO:0001411 ! structured [Term] id: PATO:0001413 @@ -9037,7 +8819,6 @@ name: regular duration def: "A duration which has regular start and/or end times." [PATOC:GVG] subset: value_slim is_a: PATO:0001309 ! duration -relationship: is_opposite_of PATO:0001417 ! irregular duration [Term] id: PATO:0001417 @@ -9045,7 +8826,6 @@ name: irregular duration def: "A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times." [PATOC:melissa] subset: value_slim is_a: PATO:0001309 ! duration -relationship: is_opposite_of PATO:0001416 ! regular duration [Term] id: PATO:0001418 @@ -9358,7 +9138,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001454 ! sensitivity to oxygen disjoint_from: PATO:0001456 ! anaerobic -relationship: is_opposite_of PATO:0001456 ! anaerobic [Term] id: PATO:0001456 @@ -9367,7 +9146,6 @@ def: "A quality inhering in a bearer by virtue of the bearer's independence on o subset: disposition_slim subset: value_slim is_a: PATO:0001454 ! sensitivity to oxygen -relationship: is_opposite_of PATO:0001455 ! aerobic [Term] id: PATO:0001457 @@ -9395,7 +9173,6 @@ def: "A sensitivity of a process inhering in a biological process by virtue of t subset: disposition_slim subset: value_slim is_a: PATO:0001458 ! sensitivity of a process to oxygen -relationship: is_opposite_of PATO:0001460 ! anaerobic (for occurrence) [Term] id: PATO:0001460 @@ -9404,7 +9181,6 @@ def: "A sensitivity of a process inhering in a biological process by virtue of t subset: disposition_slim subset: value_slim is_a: PATO:0001458 ! sensitivity of a process to oxygen -relationship: is_opposite_of PATO:0001459 ! aerobic (for occurrence) [Term] id: PATO:0001461 @@ -9506,9 +9282,6 @@ synonym: "low depth" EXACT [] synonym: "shallow" EXACT [] is_a: PATO:0000587 ! decreased size is_a: PATO:0001595 ! depth -intersection_of: PATO:0001595 ! depth -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001596 ! increased depth [Term] id: PATO:0001473 @@ -9535,9 +9308,6 @@ subset: value_slim synonym: "high position" RELATED [] is_a: PATO:0000140 ! position is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000140 ! position -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001476 ! decreased position [Term] id: PATO:0001476 @@ -9547,9 +9317,6 @@ subset: value_slim synonym: "low position" RELATED [] is_a: PATO:0000140 ! position is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000140 ! position -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001475 ! increased position [Term] id: PATO:0001477 @@ -9603,8 +9370,6 @@ synonym: "aplasia" EXACT [] synonym: "undeveloped" EXACT [] is_a: PATO:0002290 ! aplastic/hypoplastic is_a: PATO:0002291 ! agenesis -intersection_of: PATO:0002290 ! aplastic/hypoplastic -intersection_of: PATO:0002291 ! agenesis [Term] id: PATO:0001484 @@ -9625,7 +9390,6 @@ synonym: "compressed" EXACT [] synonym: "dense" RELATED [] synonym: "squashed" EXACT [] is_a: PATO:0000141 ! structure -relationship: is_opposite_of PATO:0002452 ! decondensed [Term] id: PATO:0001486 @@ -9681,7 +9445,6 @@ name: hypertrophic growth comment: This term will be obsoleted; Use GO:growth and PATO:rate. subset: value_slim is_a: PATO:0001492 ! growth rate -relationship: is_opposite_of PATO:0001494 ! hypotrophic growth [Term] id: PATO:0001494 @@ -9689,7 +9452,6 @@ name: hypotrophic growth comment: This term will be obsoleted; Use GO:growth and PATO:rate. subset: value_slim is_a: PATO:0001492 ! growth rate -relationship: is_opposite_of PATO:0001493 ! hypertrophic growth [Term] id: PATO:0001495 @@ -9745,7 +9507,6 @@ def: "A quality inhering in a bearer by virtue of the bearer's lacking complete subset: value_slim synonym: "underdeveloped" RELATED [] is_a: PATO:0000261 ! maturity -relationship: is_opposite_of PATO:0001701 ! mature [Term] id: PATO:0001502 @@ -9815,7 +9576,6 @@ def: "A functionality quality held by the bearer when the latter is able to perf subset: disposition_slim subset: value_slim is_a: PATO:0001509 ! functionality -relationship: is_opposite_of PATO:0001511 ! non-functional [Term] id: PATO:0001511 @@ -9829,7 +9589,6 @@ synonym: "disfunctional" EXACT [] synonym: "failure" RELATED [] synonym: "functional failure" EXACT [] is_a: PATO:0001509 ! functionality -relationship: is_opposite_of PATO:0001510 ! functional [Term] id: PATO:0001512 @@ -10031,7 +9790,6 @@ subset: value_slim synonym: "soluble" EXACT [] is_a: PATO:0001536 ! solubility disjoint_from: PATO:0001538 ! insoluble in -relationship: is_opposite_of PATO:0001538 ! insoluble in [Term] id: PATO:0001538 @@ -10042,7 +9800,6 @@ subset: relational_slim subset: value_slim synonym: "insoluble" EXACT [] is_a: PATO:0001536 ! solubility -relationship: is_opposite_of PATO:0001537 ! soluble in [Term] id: PATO:0001539 @@ -10090,7 +9847,6 @@ subset: disposition_slim subset: value_slim synonym: "bendy" EXACT [] is_a: PATO:0001543 ! flexibility -relationship: is_opposite_of PATO:0001545 ! inflexible [Term] id: PATO:0001545 @@ -10101,7 +9857,6 @@ subset: value_slim synonym: "stiff" EXACT [] synonym: "stiffness" RELATED [] is_a: PATO:0001543 ! flexibility -relationship: is_opposite_of PATO:0001544 ! flexible [Term] id: PATO:0001546 @@ -10138,9 +9893,6 @@ synonym: "high sensitivity toward" EXACT [] synonym: "increased sensitivity" EXACT [] is_a: PATO:0000516 ! sensitive toward is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000516 ! sensitive toward -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001550 ! decreased sensitivity toward [Term] id: PATO:0001550 @@ -10153,9 +9905,6 @@ synonym: "decreased sensitivity" EXACT [] synonym: "low sensitivity toward" EXACT [] is_a: PATO:0000516 ! sensitive toward is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000516 ! sensitive toward -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001549 ! increased sensitivity toward [Term] id: PATO:0001551 @@ -10167,9 +9916,6 @@ synonym: "high sensitivity of occurrent" EXACT [] synonym: "increased sensitivity of occurrent" EXACT [] is_a: PATO:0001457 ! sensitivity of a process is_a: PATO:0002304 ! increased process quality -intersection_of: PATO:0001457 ! sensitivity of a process -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001552 ! decreased sensitivity of a process [Term] id: PATO:0001552 @@ -10181,9 +9927,6 @@ synonym: "decreased sensitivity of occurrent" EXACT [] synonym: "low sensitivity of occurrent" EXACT [] is_a: PATO:0001457 ! sensitivity of a process is_a: PATO:0002302 ! decreased process quality -intersection_of: PATO:0001457 ! sensitivity of a process -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001551 ! increased sensitivity of a process [Term] id: PATO:0001553 @@ -10194,9 +9937,6 @@ subset: value_slim synonym: "high sensitivity of occurrent to oxygen" EXACT [] is_a: PATO:0001459 ! aerobic (for occurrence) is_a: PATO:0001551 ! increased sensitivity of a process -intersection_of: PATO:0001459 ! aerobic (for occurrence) -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001554 ! decreased sensitivity of a process to oxygen [Term] id: PATO:0001554 @@ -10207,9 +9947,6 @@ subset: value_slim synonym: "low sensitivity of occurrent to oxygen" EXACT [] is_a: PATO:0001459 ! aerobic (for occurrence) is_a: PATO:0001552 ! decreased sensitivity of a process -intersection_of: PATO:0001459 ! aerobic (for occurrence) -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001553 ! increased sensitivity of a process to oxygen [Term] id: PATO:0001555 @@ -10245,8 +9982,6 @@ subset: value_slim synonym: "having supernumerary functions" EXACT [] is_a: PATO:0001509 ! functionality is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001509 ! functionality -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal [Term] id: PATO:0001561 @@ -10267,9 +10002,6 @@ synonym: "low mass" EXACT [] synonym: "small mass" EXACT [] is_a: PATO:0000125 ! mass is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000125 ! mass -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001563 ! increased mass [Term] id: PATO:0001563 @@ -10281,9 +10013,6 @@ synonym: "high mass" EXACT [] synonym: "large mass" EXACT [] is_a: PATO:0000125 ! mass is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000125 ! mass -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001562 ! decreased mass [Term] id: PATO:0001564 @@ -10303,7 +10032,6 @@ synonym: "diffuse" EXACT [] synonym: "scattered" EXACT [] is_a: PATO:0000060 ! spatial pattern disjoint_from: PATO:0001629 ! aggregated -relationship: is_opposite_of PATO:0001567 ! undistributed [Term] id: PATO:0001567 @@ -10311,7 +10039,6 @@ name: undistributed def: "A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up." [WordNet:WordNet] subset: value_slim is_a: PATO:0000060 ! spatial pattern -relationship: is_opposite_of PATO:0001566 ! distributed [Term] id: PATO:0001570 @@ -10353,9 +10080,6 @@ subset: value_slim synonym: "low pressure" EXACT [] is_a: PATO:0001025 ! pressure is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001025 ! pressure -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001576 ! increased pressure [Term] id: PATO:0001576 @@ -10365,9 +10089,6 @@ subset: value_slim synonym: "high pressure" EXACT [] is_a: PATO:0001025 ! pressure is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001025 ! pressure -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001575 ! decreased pressure [Term] id: PATO:0001577 @@ -10378,9 +10099,6 @@ subset: value_slim synonym: "high permeability" EXACT [] is_a: PATO:0000982 ! permeable is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000982 ! permeable -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001578 ! decreased permeability [Term] id: PATO:0001578 @@ -10391,9 +10109,6 @@ subset: value_slim synonym: "low permeability" EXACT [] is_a: PATO:0000982 ! permeable is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000982 ! permeable -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001577 ! increased permeability [Term] id: PATO:0001579 @@ -10413,9 +10128,6 @@ subset: value_slim synonym: "high contractility" EXACT [] is_a: PATO:0001690 ! contractile is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001690 ! contractile -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001581 ! decreased contractility [Term] id: PATO:0001581 @@ -10426,9 +10138,6 @@ subset: value_slim synonym: "low contractility" EXACT [] is_a: PATO:0001690 ! contractile is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001690 ! contractile -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001580 ! increased contractility [Term] id: PATO:0001582 @@ -10443,9 +10152,8 @@ name: decreased variability def: "A variability which is relatively low." [PATO:GVG] subset: value_slim synonym: "low variability" EXACT [] -intersection_of: PATO:0001227 ! variant -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001584 ! increased variability +is_a: PATO:0001227 ! variant +is_a: PATO:0002301 ! decreased quality [Term] id: PATO:0001584 @@ -10453,9 +10161,8 @@ name: increased variability def: "A variability which is relatively high." [PATO:GVG] subset: value_slim synonym: "high variability" EXACT [] -intersection_of: PATO:0001227 ! variant -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001583 ! decreased variability +is_a: PATO:0001227 ! variant +is_a: PATO:0002300 ! increased quality [Term] id: PATO:0001585 @@ -10481,9 +10188,8 @@ name: increased variability of rate def: "A variability of rate which is relatively high." [PATO:GVG] subset: value_slim synonym: "high variability of rate" EXACT [] -intersection_of: PATO:0001586 ! variability of rate -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001588 ! decreased variability of rate +is_a: PATO:0001586 ! variability of rate +is_a: PATO:0002300 ! increased quality [Term] id: PATO:0001588 @@ -10491,9 +10197,8 @@ name: decreased variability of rate def: "A variability of rate which is relatively low." [PATO:GVG] subset: value_slim synonym: "low variability of rate" EXACT [] -intersection_of: PATO:0001586 ! variability of rate -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001587 ! increased variability of rate +is_a: PATO:0001586 ! variability of rate +is_a: PATO:0002301 ! decreased quality [Term] id: PATO:0001589 @@ -10526,9 +10231,6 @@ def: "A curvature which is relatively high." [PATO:GVG] subset: value_slim is_a: PATO:0000406 ! curved is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000406 ! curved -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001593 ! decreased curvature [Term] id: PATO:0001593 @@ -10537,9 +10239,6 @@ def: "A curvature which is relatively low." [PATO:GVG] subset: value_slim is_a: PATO:0000406 ! curved is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000406 ! curved -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001592 ! increased curvature [Term] id: PATO:0001594 @@ -10565,9 +10264,6 @@ subset: value_slim synonym: "deep" EXACT [] is_a: PATO:0000586 ! increased size is_a: PATO:0001595 ! depth -intersection_of: PATO:0001595 ! depth -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001472 ! decreased depth [Term] id: PATO:0001597 @@ -10628,9 +10324,6 @@ def: "A life span which is relatively high." [PATO:GVG] synonym: "high life span" EXACT [] is_a: PATO:0000050 ! life span is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000050 ! life span -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001604 ! decreased life span [Term] id: PATO:0001604 @@ -10639,9 +10332,6 @@ def: "A life span which is relatively low." [PATO:GVG] synonym: "low life span" EXACT [] is_a: PATO:0000050 ! life span is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000050 ! life span -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001603 ! increased life span [Term] id: PATO:0001605 @@ -10697,9 +10387,8 @@ name: increased variability of color def: "A variability of color which is relatively high." [PATO:GVG] subset: value_slim synonym: "high variability of color" EXACT [] -intersection_of: PATO:0001615 ! variant color -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001613 ! decreased variability of color +is_a: PATO:0001615 ! variant color +is_a: PATO:0002300 ! increased quality [Term] id: PATO:0001613 @@ -10707,9 +10396,8 @@ name: decreased variability of color def: "A variability of color which is relatively low." [PATO:GVG] subset: value_slim synonym: "low variability of color" EXACT [] -intersection_of: PATO:0001615 ! variant color -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001612 ! increased variability of color +is_a: PATO:0001615 ! variant color +is_a: PATO:0002301 ! decreased quality [Term] id: PATO:0001614 @@ -10717,7 +10405,6 @@ name: invariant color def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color." [PATO:GVG] subset: value_slim is_a: PATO:0001611 ! variability of color -relationship: is_opposite_of PATO:0001615 ! variant color [Term] id: PATO:0001615 @@ -10725,7 +10412,6 @@ name: variant color def: "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour." [PATO:GVG] subset: value_slim is_a: PATO:0001611 ! variability of color -relationship: is_opposite_of PATO:0001614 ! invariant color [Term] id: PATO:0001617 @@ -10745,9 +10431,6 @@ subset: value_slim synonym: "high tonicity" EXACT [] is_a: PATO:0001439 ! tonicity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001439 ! tonicity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001619 ! decreased tonicity [Term] id: PATO:0001619 @@ -10758,9 +10441,6 @@ subset: value_slim synonym: "low tonicity" EXACT [] is_a: PATO:0001439 ! tonicity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001439 ! tonicity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001618 ! increased tonicity [Term] id: PATO:0001620 @@ -10779,9 +10459,6 @@ subset: value_slim synonym: "low turgor" EXACT [] is_a: PATO:0001620 ! turgor is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001620 ! turgor -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001622 ! increased turgor [Term] id: PATO:0001622 @@ -10792,9 +10469,6 @@ subset: value_slim synonym: "high turgor" EXACT [] is_a: PATO:0001620 ! turgor is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001620 ! turgor -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001621 ! decreased turgor [Term] id: PATO:0001623 @@ -10824,9 +10498,6 @@ synonym: "low functionality" EXACT [] synonym: "partial functionality" EXACT [] is_a: PATO:0001510 ! functional is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001510 ! functional -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001625 ! increased functionality [Term] id: PATO:0001625 @@ -10837,9 +10508,6 @@ subset: value_slim synonym: "high functionality" EXACT [] is_a: PATO:0001510 ! functional is_a: PATO:0001559 ! having extra function -intersection_of: PATO:0001510 ! functional -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001624 ! decreased functionality [Term] id: PATO:0001626 @@ -10857,7 +10525,6 @@ def: "A wholeness quality inhering in a bearer by virtue of the bearer's has eno subset: value_slim synonym: "adequate" RELATED [] is_a: PATO:0001626 ! sufficiency -relationship: is_opposite_of PATO:0001628 ! insufficient [Term] id: PATO:0001628 @@ -10866,7 +10533,6 @@ def: "A wholeness quality inhering in a bearer by virtue of the bearer's lacks e subset: value_slim synonym: "inadequate" RELATED [] is_a: PATO:0001626 ! sufficiency -relationship: is_opposite_of PATO:0001627 ! sufficient [Term] id: PATO:0001629 @@ -10922,7 +10588,6 @@ def: "A necessity quality (continuant) inhering in a bearer by virtue of the bea subset: value_slim is_a: PATO:0001634 ! necessity (continuant) disjoint_from: PATO:0001636 ! unnecessary (continuant) -relationship: is_opposite_of PATO:0001636 ! unnecessary (continuant) [Term] id: PATO:0001636 @@ -10930,7 +10595,6 @@ name: unnecessary (continuant) def: "A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable." [WordNet:WordNet] subset: value_slim is_a: PATO:0001634 ! necessity (continuant) -relationship: is_opposite_of PATO:0001635 ! necessary (continuant) [Term] id: PATO:0001637 @@ -10945,7 +10609,6 @@ name: necessary (occurrent) def: "A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable." [PATO:GVG] subset: value_slim is_a: PATO:0001637 ! necessity of occurrent -relationship: is_opposite_of PATO:0001639 ! unnecessary (occurrent) [Term] id: PATO:0001639 @@ -10953,7 +10616,6 @@ name: unnecessary (occurrent) def: "A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable." [PATO:GVG] subset: value_slim is_a: PATO:0001637 ! necessity of occurrent -relationship: is_opposite_of PATO:0001638 ! necessary (occurrent) [Term] id: PATO:0001643 @@ -11007,9 +10669,6 @@ synonym: "high resistance to" EXACT [] synonym: "increased resistance" EXACT [] is_a: PATO:0001178 ! resistant to is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001178 ! resistant to -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001651 ! decreased resistance to [Term] id: PATO:0001651 @@ -11022,9 +10681,6 @@ synonym: "decreased resistance" EXACT [] synonym: "low resistance to" EXACT [] is_a: PATO:0001178 ! resistant to is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001178 ! resistant to -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001650 ! increased resistance to [Term] id: PATO:0001652 @@ -11044,7 +10700,6 @@ subset: value_slim synonym: "aligned" EXACT [] synonym: "aligned to" RELATED [] is_a: PATO:0001652 ! alignment -relationship: is_opposite_of PATO:0001654 ! misaligned with [Term] id: PATO:0001654 @@ -11055,7 +10710,6 @@ subset: value_slim synonym: "misaligned" EXACT [] synonym: "unaligned with" EXACT [] is_a: PATO:0001652 ! alignment -relationship: is_opposite_of PATO:0001653 ! aligned with [Term] id: PATO:0001655 @@ -11075,9 +10729,6 @@ subset: value_slim synonym: "low osmolarity" EXACT [] is_a: PATO:0001655 ! osmolarity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001655 ! osmolarity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001657 ! increased osmolarity [Term] id: PATO:0001657 @@ -11088,9 +10739,6 @@ subset: value_slim synonym: "high osmolarity" EXACT [] is_a: PATO:0001655 ! osmolarity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001655 ! osmolarity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001656 ! decreased osmolarity [Term] id: PATO:0001658 @@ -11144,9 +10792,6 @@ subset: value_slim synonym: "high solubility" EXACT [] is_a: PATO:0001537 ! soluble in is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001537 ! soluble in -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001664 ! decreased solubility [Term] id: PATO:0001664 @@ -11158,9 +10803,6 @@ subset: value_slim synonym: "low solubility" EXACT [] is_a: PATO:0001537 ! soluble in is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001537 ! soluble in -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001663 ! increased solubility [Term] id: PATO:0001665 @@ -11205,9 +10847,6 @@ synonym: "high susceptibility toward" EXACT [] synonym: "increased susceptibility" EXACT [] is_a: PATO:0001152 ! susceptible toward is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001152 ! susceptible toward -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001670 ! decreased susceptibility toward [Term] id: PATO:0001670 @@ -11220,9 +10859,6 @@ synonym: "decreased susceptibility" EXACT [] synonym: "low susceptibility toward" EXACT [] is_a: PATO:0001152 ! susceptible toward is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001152 ! susceptible toward -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001669 ! increased susceptibility toward [Term] id: PATO:0001671 @@ -11232,9 +10868,6 @@ subset: value_slim synonym: "high distribution" EXACT [] is_a: PATO:0001475 ! increased position is_a: PATO:0001566 ! distributed -intersection_of: PATO:0001566 ! distributed -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001672 ! decreased distribution [Term] id: PATO:0001672 @@ -11244,9 +10877,6 @@ subset: value_slim synonym: "low distribution" EXACT [] is_a: PATO:0001476 ! decreased position is_a: PATO:0001566 ! distributed -intersection_of: PATO:0001566 ! distributed -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001671 ! increased distribution [Term] id: PATO:0001673 @@ -11274,9 +10904,6 @@ subset: value_slim synonym: "low efficiency" EXACT [] is_a: PATO:0001678 ! efficient is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001678 ! efficient -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001676 ! increased efficiency [Term] id: PATO:0001676 @@ -11286,9 +10913,6 @@ subset: value_slim synonym: "high efficiency" EXACT [] is_a: PATO:0001678 ! efficient is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001678 ! efficient -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001675 ! decreased efficiency [Term] id: PATO:0001677 @@ -11297,7 +10921,6 @@ def: "An efficiency quality inhering in a bearer by virtue of the bearer's lacki subset: value_slim is_a: PATO:0001029 ! efficiency disjoint_from: PATO:0001678 ! efficient -relationship: is_opposite_of PATO:0001678 ! efficient [Term] id: PATO:0001678 @@ -11305,7 +10928,6 @@ name: efficient def: "An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency." [PATOC:GVG] subset: value_slim is_a: PATO:0001029 ! efficiency -relationship: is_opposite_of PATO:0001677 ! inefficient [Term] id: PATO:0001679 @@ -11350,9 +10972,6 @@ subset: value_slim synonym: "high magnetism" EXACT [] is_a: PATO:0001685 ! magnetic is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001685 ! magnetic -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001684 ! decreased magnetism [Term] id: PATO:0001684 @@ -11363,9 +10982,6 @@ subset: value_slim synonym: "low magnetism" EXACT [] is_a: PATO:0001685 ! magnetic is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001685 ! magnetic -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001683 ! increased magnetism [Term] id: PATO:0001685 @@ -11375,7 +10991,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001682 ! magnetism disjoint_from: PATO:0001686 ! non-magnetic -relationship: is_opposite_of PATO:0001686 ! non-magnetic [Term] id: PATO:0001686 @@ -11384,7 +10999,6 @@ def: "A magnetic quality inhering in a bearer by virtue of the bearer's inabilit subset: disposition_slim subset: value_slim is_a: PATO:0001682 ! magnetism -relationship: is_opposite_of PATO:0001685 ! magnetic [Term] id: PATO:0001687 @@ -11402,9 +11016,6 @@ synonym: "elevated" RELATED [] synonym: "high elevation" EXACT [] is_a: PATO:0001475 ! increased position is_a: PATO:0001687 ! elevation -intersection_of: PATO:0001687 ! elevation -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001689 ! decreased elevation [Term] id: PATO:0001689 @@ -11414,9 +11025,6 @@ subset: value_slim synonym: "low elevation" EXACT [] is_a: PATO:0001476 ! decreased position is_a: PATO:0001687 ! elevation -intersection_of: PATO:0001687 ! elevation -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001688 ! increased elevation [Term] id: PATO:0001690 @@ -11427,7 +11035,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001579 ! contractility disjoint_from: PATO:0001691 ! non-contractile -relationship: is_opposite_of PATO:0001691 ! non-contractile [Term] id: PATO:0001691 @@ -11437,7 +11044,6 @@ comment: This refers to the disposition of the bearer. subset: disposition_slim subset: value_slim is_a: PATO:0001579 ! contractility -relationship: is_opposite_of PATO:0001690 ! contractile [Term] id: PATO:0001693 @@ -11448,9 +11054,6 @@ subset: value_slim synonym: "high viscosity" EXACT [] is_a: PATO:0000998 ! viscous is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000998 ! viscous -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001694 ! decreased viscosity [Term] id: PATO:0001694 @@ -11461,9 +11064,6 @@ subset: value_slim synonym: "low viscosity" EXACT [] is_a: PATO:0000998 ! viscous is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000998 ! viscous -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001693 ! increased viscosity [Term] id: PATO:0001695 @@ -11474,9 +11074,6 @@ subset: value_slim synonym: "high fecundity" EXACT [] is_a: PATO:0000273 ! fecundity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000273 ! fecundity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001696 ! decreased fecundity [Term] id: PATO:0001696 @@ -11487,9 +11084,6 @@ subset: value_slim synonym: "low fecundity" EXACT [] is_a: PATO:0000273 ! fecundity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000273 ! fecundity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001695 ! increased fecundity [Term] id: PATO:0001697 @@ -11501,9 +11095,6 @@ subset: value_slim synonym: "low photosensitivity" EXACT [] is_a: PATO:0000547 ! photosensitive is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000547 ! photosensitive -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001698 ! increased photosensitivity [Term] id: PATO:0001698 @@ -11515,9 +11106,6 @@ subset: value_slim synonym: "high photosensitivity" EXACT [] is_a: PATO:0000547 ! photosensitive is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000547 ! photosensitive -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001697 ! decreased photosensitivity [Term] id: PATO:0001699 @@ -11525,7 +11113,6 @@ name: regular sleep pattern def: "A sleep pattern which has regular start and/or end times." [PATOC:GVG] subset: value_slim is_a: PATO:0000062 ! sleep pattern -relationship: is_opposite_of PATO:0001700 ! irregular sleep pattern [Term] id: PATO:0001700 @@ -11533,7 +11120,6 @@ name: irregular sleep pattern def: "A sleep pattern which has irregular start and/or end times." [PATOC:GVG] subset: value_slim is_a: PATO:0000062 ! sleep pattern -relationship: is_opposite_of PATO:0001699 ! regular sleep pattern [Term] id: PATO:0001701 @@ -11541,7 +11127,6 @@ name: mature def: "A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] subset: value_slim is_a: PATO:0000261 ! maturity -relationship: is_opposite_of PATO:0001501 ! immature [Term] id: PATO:0001702 @@ -11583,7 +11168,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002265 ! behavioural activity disjoint_from: PATO:0001707 ! behavioural active -relationship: is_opposite_of PATO:0001707 ! behavioural active [Term] id: PATO:0001707 @@ -11591,7 +11175,6 @@ name: behavioural active def: "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity." [PATOC:GVG] subset: value_slim is_a: PATO:0002265 ! behavioural activity -relationship: is_opposite_of PATO:0001706 ! behavioural inactive [Term] id: PATO:0001708 @@ -11632,9 +11215,6 @@ def: "A perimeter which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0000573 ! increased length is_a: PATO:0001711 ! perimeter -intersection_of: PATO:0001711 ! perimeter -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001713 ! decreased perimeter [Term] id: PATO:0001713 @@ -11643,9 +11223,6 @@ def: "A perimeter which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0000574 ! decreased length is_a: PATO:0001711 ! perimeter -intersection_of: PATO:0001711 ! perimeter -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001712 ! increased perimeter [Term] id: PATO:0001714 @@ -11654,9 +11231,6 @@ def: "A diameter which is relatively large." [PATOC:GVG] subset: value_slim is_a: PATO:0000573 ! increased length is_a: PATO:0001334 ! diameter -intersection_of: PATO:0001334 ! diameter -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001715 ! decreased diameter [Term] id: PATO:0001715 @@ -11665,9 +11239,6 @@ def: "A diameter which is relatively small." [PATOC:GVG] subset: value_slim is_a: PATO:0000574 ! decreased length is_a: PATO:0001334 ! diameter -intersection_of: PATO:0001334 ! diameter -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001714 ! increased diameter [Term] id: PATO:0001716 @@ -11679,7 +11250,6 @@ synonym: "resilient" RELATED [] synonym: "strong" RELATED [] synonym: "tough" RELATED [] is_a: PATO:0001662 ! fragility -relationship: is_opposite_of PATO:0001362 ! fragile [Term] id: PATO:0001717 @@ -11729,9 +11299,6 @@ subset: value_slim synonym: "high female receptivity" EXACT [] is_a: PATO:0001720 ! female receptivity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001720 ! female receptivity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001724 ! decreased female receptivity [Term] id: PATO:0001724 @@ -11742,9 +11309,6 @@ subset: value_slim synonym: "low female receptivity" EXACT [] is_a: PATO:0001720 ! female receptivity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001720 ! female receptivity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001723 ! increased female receptivity [Term] id: PATO:0001725 @@ -11755,9 +11319,6 @@ subset: value_slim synonym: "high male receptivity" EXACT [] is_a: PATO:0001721 ! male receptivity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001721 ! male receptivity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001726 ! decreased male receptivity [Term] id: PATO:0001726 @@ -11768,9 +11329,6 @@ subset: value_slim synonym: "low male receptivity" EXACT [] is_a: PATO:0001721 ! male receptivity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001721 ! male receptivity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001725 ! increased male receptivity [Term] id: PATO:0001727 @@ -11905,9 +11463,6 @@ subset: value_slim synonym: "high radioactivity" EXACT [] is_a: PATO:0001741 ! radioactive is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001741 ! radioactive -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001743 ! decreased radioactivity [Term] id: PATO:0001743 @@ -11917,9 +11472,6 @@ subset: value_slim synonym: "low radioactivity" EXACT [] is_a: PATO:0001741 ! radioactive is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001741 ! radioactive -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001742 ! increased radioactivity [Term] id: PATO:0001744 @@ -11970,7 +11522,6 @@ subset: value_slim synonym: "hypoplastic growth" EXACT [] synonym: "pedomorphic growth" EXACT [] is_a: PATO:0001490 ! heterochronic growth -relationship: is_opposite_of PATO:0001752 ! peramorphic growth [Term] id: PATO:0001750 @@ -11993,7 +11544,6 @@ def: "A heterochronic growth quality inhering in an organism, structure, or grou subset: attribute_slim synonym: "hyperplastic growth" EXACT [] is_a: PATO:0001490 ! heterochronic growth -relationship: is_opposite_of PATO:0001749 ! paedomorphic growth [Term] id: PATO:0001753 @@ -12059,7 +11609,6 @@ name: female semi-fertile subset: disposition_slim subset: value_slim is_a: PATO:0001767 ! semi-fertile -relationship: is_opposite_of PATO:0001763 ! female semi-sterile [Term] id: PATO:0001761 @@ -12067,7 +11616,6 @@ name: male semi-fertile subset: disposition_slim subset: value_slim is_a: PATO:0001767 ! semi-fertile -relationship: is_opposite_of PATO:0001762 ! male semi-sterile [Term] id: PATO:0001762 @@ -12075,7 +11623,6 @@ name: male semi-sterile subset: disposition_slim subset: value_slim is_a: PATO:0000279 ! male fertility -relationship: is_opposite_of PATO:0001761 ! male semi-fertile [Term] id: PATO:0001763 @@ -12083,7 +11630,6 @@ name: female semi-sterile subset: disposition_slim subset: value_slim is_a: PATO:0000277 ! female fertility -relationship: is_opposite_of PATO:0001760 ! female semi-fertile [Term] id: PATO:0001764 @@ -12093,9 +11639,6 @@ subset: value_slim synonym: "high age" EXACT [] is_a: PATO:0000011 ! age is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000011 ! age -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001765 ! decreased age [Term] id: PATO:0001765 @@ -12105,9 +11648,6 @@ subset: value_slim synonym: "low age" EXACT [] is_a: PATO:0000011 ! age is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000011 ! age -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001764 ! increased age [Term] id: PATO:0001766 @@ -12191,9 +11731,6 @@ subset: value_slim synonym: "high flexibility" EXACT [] is_a: PATO:0001544 ! flexible is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001544 ! flexible -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001777 ! decreased flexibility [Term] id: PATO:0001777 @@ -12204,9 +11741,6 @@ subset: value_slim synonym: "low flexibility" EXACT [] is_a: PATO:0001544 ! flexible is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001544 ! flexible -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001776 ! increased flexibility [Term] id: PATO:0001778 @@ -12216,9 +11750,6 @@ subset: value_slim synonym: "high strength" EXACT [] is_a: PATO:0001230 ! strength is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001230 ! strength -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001779 ! decreased strength [Term] id: PATO:0001779 @@ -12228,9 +11759,6 @@ subset: value_slim synonym: "weak" EXACT [] is_a: PATO:0001230 ! strength is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001230 ! strength -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001778 ! increased strength [Term] id: PATO:0001780 @@ -12256,9 +11784,6 @@ subset: value_slim synonym: "high intensity" EXACT [] is_a: PATO:0000049 ! intensity is_a: PATO:0002300 ! increased quality -intersection_of: PATO:0000049 ! intensity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001783 ! decreased intensity [Term] id: PATO:0001783 @@ -12268,9 +11793,6 @@ subset: value_slim synonym: "low intensity" EXACT [] is_a: PATO:0000049 ! intensity is_a: PATO:0002301 ! decreased quality -intersection_of: PATO:0000049 ! intensity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001782 ! increased intensity [Term] id: PATO:0001784 @@ -12323,9 +11845,6 @@ subset: value_slim synonym: "high density" EXACT [] is_a: PATO:0001164 ! dense is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001164 ! dense -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001790 ! decreased mass density [Term] id: PATO:0001789 @@ -12344,9 +11863,6 @@ subset: value_slim synonym: "low density" EXACT [] is_a: PATO:0001164 ! dense is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001164 ! dense -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001788 ! increased mass density [Term] id: PATO:0001791 @@ -12391,9 +11907,6 @@ subset: value_slim synonym: "high coiling" EXACT [] is_a: PATO:0000404 ! coiled is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000404 ! coiled -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001796 ! decreased coiling [Term] id: PATO:0001796 @@ -12404,9 +11917,6 @@ subset: value_slim synonym: "low coiling" EXACT [] is_a: PATO:0000404 ! coiled is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000404 ! coiled -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001795 ! increased coiling [Term] id: PATO:0001798 @@ -12443,8 +11953,6 @@ synonym: "dehydrated" EXACT [] synonym: "dry" RELATED [] is_a: PATO:0001800 ! water composition is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001800 ! water composition -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal [Term] id: PATO:0001802 @@ -12496,9 +12004,6 @@ subset: value_slim synonym: "low sensitivity to irradiation" EXACT [] is_a: PATO:0001806 ! sensitivity to irradiation is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001806 ! sensitivity to irradiation -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001808 ! increased sensitivity to irradiation [Term] id: PATO:0001808 @@ -12509,9 +12014,6 @@ subset: value_slim synonym: "high sensitivity to irradiation" EXACT [] is_a: PATO:0001806 ! sensitivity to irradiation is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001806 ! sensitivity to irradiation -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001807 ! decreased sensitivity to irradiation [Term] id: PATO:0001809 @@ -12580,7 +12082,6 @@ subset: value_slim synonym: "high fatigability" EXACT [] is_a: PATO:0001779 ! decreased strength is_a: PATO:0001815 ! fatigability -relationship: is_opposite_of PATO:0001817 ! decreased fatigability [Term] id: PATO:0001817 @@ -12591,7 +12092,6 @@ subset: value_slim synonym: "low fatigability" EXACT [] is_a: PATO:0001778 ! increased strength is_a: PATO:0001815 ! fatigability -relationship: is_opposite_of PATO:0001816 ! increased fatigability [Term] id: PATO:0001818 @@ -12601,7 +12101,6 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence -relationship: is_opposite_of PATO:0002026 ! non-progressive [Term] id: PATO:0001819 @@ -12620,7 +12119,6 @@ subset: mpath_slim subset: value_slim synonym: "unperforated" EXACT [] is_a: PATO:0002014 ! structure, cavities -relationship: is_opposite_of PATO:0002112 ! perforate [Term] id: PATO:0001822 @@ -12639,7 +12137,6 @@ subset: mpath_slim subset: value_slim is_a: PATO:0001822 ! wetness disjoint_from: PATO:0001824 ! dry -relationship: is_opposite_of PATO:0001824 ! dry [Term] id: PATO:0001824 @@ -12648,7 +12145,6 @@ def: "A wetness quality inhering in a bearer by virtue of the bearer's not being subset: mpath_slim subset: value_slim is_a: PATO:0001822 ! wetness -relationship: is_opposite_of PATO:0001823 ! wet [Term] id: PATO:0001825 @@ -12657,9 +12153,6 @@ def: "A wetness quality that is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0001823 ! wet is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001823 ! wet -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001826 ! decreased wetness [Term] id: PATO:0001826 @@ -12669,9 +12162,6 @@ subset: value_slim synonym: "low wetness" EXACT [] is_a: PATO:0001823 ! wet is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001823 ! wet -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001825 ! increased wetness [Term] id: PATO:0001827 @@ -12703,9 +12193,6 @@ subset: value_slim synonym: "low female fertility" EXACT [] is_a: PATO:0000888 ! female fertile is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000888 ! female fertile -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001831 ! increased female fertility [Term] id: PATO:0001831 @@ -12716,9 +12203,6 @@ subset: value_slim synonym: "high female fertility" EXACT [] is_a: PATO:0000888 ! female fertile is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000888 ! female fertile -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001830 ! decreased female fertility [Term] id: PATO:0001832 @@ -12729,9 +12213,6 @@ subset: value_slim synonym: "high male fertility" EXACT [] is_a: PATO:0000891 ! male fertile is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000891 ! male fertile -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001833 ! decreased male fertility [Term] id: PATO:0001833 @@ -12742,9 +12223,6 @@ subset: value_slim synonym: "low male fertility" EXACT [] is_a: PATO:0000891 ! male fertile is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000891 ! male fertile -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001832 ! increased male fertility [Term] id: PATO:0001834 @@ -12755,9 +12233,6 @@ subset: value_slim synonym: "low fertility" EXACT [] is_a: PATO:0000955 ! fertile is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000955 ! fertile -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001835 ! increased fertility [Term] id: PATO:0001835 @@ -12768,9 +12243,6 @@ subset: value_slim synonym: "high fertility" EXACT [] is_a: PATO:0000955 ! fertile is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000955 ! fertile -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001834 ! decreased fertility [Term] id: PATO:0001836 @@ -12788,9 +12260,6 @@ subset: value_slim synonym: "low flow" EXACT [] is_a: PATO:0002243 ! fluid flow rate is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002243 ! fluid flow rate -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001839 ! increased fluid flow [Term] id: PATO:0001839 @@ -12800,9 +12269,6 @@ subset: value_slim synonym: "high flow" EXACT [] is_a: PATO:0002243 ! fluid flow rate is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002243 ! fluid flow rate -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001838 ! decreased fluid flow [Term] id: PATO:0001841 @@ -12830,9 +12296,6 @@ subset: value_slim synonym: "low acidity" EXACT [] is_a: PATO:0001842 ! acidity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001842 ! acidity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001844 ! increased acidity [Term] id: PATO:0001844 @@ -12842,9 +12305,6 @@ subset: value_slim synonym: "high acidity" EXACT [] is_a: PATO:0001842 ! acidity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001842 ! acidity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001843 ! decreased acidity [Term] id: PATO:0001845 @@ -12957,7 +12417,6 @@ def: "A shape quality in a bearer by virtue of the bearer's curving inward." [Wo subset: cell_quality subset: value_slim is_a: PATO:0002005 ! concavity -relationship: is_opposite_of PATO:0001355 ! convex [Term] id: PATO:0001858 @@ -12975,9 +12434,6 @@ subset: value_slim synonym: "high coordination" EXACT [] is_a: PATO:0000769 ! coordinated is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000769 ! coordinated -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001860 ! decreased coordination [Term] id: PATO:0001860 @@ -12988,9 +12444,6 @@ subset: value_slim synonym: "low coordination" EXACT [] is_a: PATO:0000769 ! coordinated is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000769 ! coordinated -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001859 ! increased coordination [Term] id: PATO:0001861 @@ -13001,7 +12454,6 @@ subset: value_slim synonym: "fascicled" EXACT [] is_a: PATO:0002013 ! fasciculation disjoint_from: PATO:0001959 ! defasciculated -relationship: is_opposite_of PATO:0001959 ! defasciculated [Term] id: PATO:0001862 @@ -13020,7 +12472,6 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0001309 ! duration -relationship: is_opposite_of PATO:0000389 ! acute [Term] id: PATO:0001865 @@ -13217,7 +12668,6 @@ subset: attribute_slim subset: disposition_slim is_a: PATO:0001018 ! physical quality disjoint_from: PATO:0001886 ! hydrophilicity -relationship: is_opposite_of PATO:0001886 ! hydrophilicity [Term] id: PATO:0001885 @@ -13226,7 +12676,6 @@ def: "A quality inhering in a bearer by virtue of the bearer's lacking affinity subset: disposition_slim subset: value_slim is_a: PATO:0001884 ! hydrophobicity -relationship: is_opposite_of PATO:0001887 ! hydrophilic [Term] id: PATO:0001886 @@ -13235,7 +12684,6 @@ def: "A physical quality inhering in a bearer by virtue the bearer's disposition subset: attribute_slim subset: disposition_slim is_a: PATO:0001018 ! physical quality -relationship: is_opposite_of PATO:0001884 ! hydrophobicity [Term] id: PATO:0001887 @@ -13244,7 +12692,6 @@ def: "A quality inhering in a bearer by virtue of the bearer's disposition to ha subset: disposition_slim subset: value_slim is_a: PATO:0001886 ! hydrophilicity -relationship: is_opposite_of PATO:0001885 ! hydrophobic [Term] id: PATO:0001888 @@ -13295,9 +12742,6 @@ def: "An odor quality of having decreased odor." [PATOC:GVG] subset: value_slim is_a: PATO:0001331 ! odorous is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001331 ! odorous -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001893 ! increased odor [Term] id: PATO:0001893 @@ -13306,9 +12750,6 @@ def: "An odor quality of having increased odor." [PATOC:GVG] subset: value_slim is_a: PATO:0001331 ! odorous is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001331 ! odorous -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001892 ! decreased odor [Term] id: PATO:0001894 @@ -13330,7 +12771,6 @@ name: unlumenized def: "A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances." [PATOC:MAH] subset: value_slim is_a: PATO:0002014 ! structure, cavities -relationship: is_opposite_of PATO:0001897 ! lumenized [Term] id: PATO:0001897 @@ -13339,7 +12779,6 @@ def: "A structure quality inhering in a bearer by virtue of the bearer's having comment: See GO term: GO:0031974 membrane-enclosed lumen [DEF:"The enclosed volume within a sealed membrane or between two sealed membranes"]. subset: value_slim is_a: PATO:0002014 ! structure, cavities -relationship: is_opposite_of PATO:0001896 ! unlumenized [Term] id: PATO:0001898 @@ -13348,9 +12787,6 @@ def: "A circumference which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0001648 ! circumference is_a: PATO:0001712 ! increased perimeter -intersection_of: PATO:0001648 ! circumference -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001899 ! decreased circumference [Term] id: PATO:0001899 @@ -13359,9 +12795,6 @@ def: "A circumference which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0001648 ! circumference is_a: PATO:0001713 ! decreased perimeter -intersection_of: PATO:0001648 ! circumference -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001898 ! increased circumference [Term] id: PATO:0001900 @@ -13369,7 +12802,6 @@ name: front def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction -relationship: is_opposite_of PATO:0001901 ! back [Term] id: PATO:0001901 @@ -13377,7 +12809,6 @@ name: back def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction -relationship: is_opposite_of PATO:0001900 ! front [Term] id: PATO:0001902 @@ -13561,9 +12992,6 @@ subset: value_slim synonym: "high fluorescence" EXACT [] is_a: PATO:0001290 ! fluorescent is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001290 ! fluorescent -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001927 ! decreased fluorescence [Term] id: PATO:0001927 @@ -13573,9 +13001,6 @@ subset: value_slim synonym: "low fluorescence" EXACT [] is_a: PATO:0001290 ! fluorescent is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001290 ! fluorescent -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001926 ! increased fluorescence [Term] id: PATO:0001928 @@ -13600,7 +13025,6 @@ name: variant shape def: "A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape." [PATOC:GVG] subset: value_slim is_a: PATO:0001929 ! variability of shape -relationship: is_opposite_of PATO:0001931 ! invariant shape [Term] id: PATO:0001931 @@ -13608,7 +13032,6 @@ name: invariant shape def: "A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape." [PATOC:GVG] subset: value_slim is_a: PATO:0001929 ! variability of shape -relationship: is_opposite_of PATO:0001930 ! variant shape [Term] id: PATO:0001932 @@ -13803,9 +13226,8 @@ name: decreased variability of size def: "A variability of size which is relatively low." [PATOC:GVG] subset: value_slim synonym: "low variability of size" EXACT [] -intersection_of: PATO:0001956 ! variability of size -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001958 ! increased variability of size +is_a: PATO:0001956 ! variability of size +is_a: PATO:0002301 ! decreased quality [Term] id: PATO:0001958 @@ -13813,9 +13235,8 @@ name: increased variability of size def: "A variability of size which is relatively high." [PATOC:GVG] subset: value_slim synonym: "high variability of size" EXACT [] -intersection_of: PATO:0001956 ! variability of size -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0001957 ! decreased variability of size +is_a: PATO:0001956 ! variability of size +is_a: PATO:0002300 ! increased quality [Term] id: PATO:0001959 @@ -13823,7 +13244,6 @@ name: defasciculated def: "A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated." [PATOC:mw] subset: value_slim is_a: PATO:0002013 ! fasciculation -relationship: is_opposite_of PATO:0001861 ! fasciculated [Term] id: PATO:0001960 @@ -13938,7 +13358,6 @@ name: unserrated def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex." [ISBN:0881923214] subset: value_slim is_a: PATO:0001976 ! serration -relationship: is_opposite_of PATO:0001206 ! serrated [Term] id: PATO:0001976 @@ -14087,6 +13506,7 @@ id: PATO:0001995 name: organismal quality def: "A quality that inheres in an entire organism or part of an organism." [PATOC:CJM] is_a: PATO:0001241 ! physical object quality +disjoint_from: PATO:0002003 ! population quality [Term] id: PATO:0001997 @@ -14102,9 +13522,6 @@ synonym: "reduced" RELATED [] synonym: "subnumerary" RELATED [] is_a: PATO:0000467 ! present is_a: PATO:0002301 ! decreased quality -intersection_of: PATO:0000070 ! amount -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0000470 ! increased amount [Term] id: PATO:0001998 @@ -14145,9 +13562,6 @@ synonym: "has decreased number of" EXACT [] synonym: "has fewer physical parts of type" EXACT [] is_a: PATO:0001999 ! lacks parts or has fewer parts of type is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001999 ! lacks parts or has fewer parts of type -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002002 ! has extra parts of type [Term] id: PATO:0002002 @@ -14163,9 +13577,6 @@ synonym: "having supernumerary physical parts" EXACT [] synonym: "increased number of" EXACT [] is_a: PATO:0002083 ! altered number of is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002083 ! altered number of -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002001 ! has fewer parts of type [Term] id: PATO:0002003 @@ -14207,7 +13618,6 @@ subset: attribute_slim xref: Image:http\://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png is_a: PATO:0002266 ! 3-D shape relationship: has_cross_section PATO:0002006 ! 2-D shape -relationship: is_opposite_of PATO:0002008 ! concave 3-D shape [Term] id: PATO:0002008 @@ -14217,7 +13627,6 @@ subset: attribute_slim xref: Image:http\://en.wikipedia.org/wiki/Image\:Convex_polygon_illustration2.png is_a: PATO:0002266 ! 3-D shape relationship: has_part PATO:0001857 ! concave -relationship: is_opposite_of PATO:0002007 ! convex 3-D shape [Term] id: PATO:0002009 @@ -14275,14 +13684,12 @@ id: PATO:0002017 name: increased magnitude synonym: "high magnitude" EXACT [] is_a: PATO:0002016 ! magnitude -relationship: is_opposite_of PATO:0002018 ! decreased magnitude [Term] id: PATO:0002018 name: decreased magnitude synonym: "low magnitude" EXACT [] is_a: PATO:0002016 ! magnitude -relationship: is_opposite_of PATO:0002017 ! increased magnitude [Term] id: PATO:0002019 @@ -14345,7 +13752,6 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence -relationship: is_opposite_of PATO:0001818 ! progressive created_by: george gkoutos creation_date: 2008-12-18T12:49:19Z @@ -14369,9 +13775,6 @@ subset: value_slim synonym: "low osmolality" EXACT [] is_a: PATO:0002027 ! osmolality is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002027 ! osmolality -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002029 ! increased osmolality created_by: george creation_date: 2009-01-27T10:55:33Z @@ -14384,9 +13787,6 @@ subset: value_slim synonym: "high osmolality" EXACT [] is_a: PATO:0002027 ! osmolality is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002027 ! osmolality -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002028 ! decreased osmolality created_by: george creation_date: 2009-01-27T10:56:19Z @@ -14478,7 +13878,6 @@ def: "A structural quality inhering in a bearer whose structure which does not d subset: value_slim synonym: "not degenerate" EXACT [] is_a: PATO:0002037 ! degeneration -relationship: is_opposite_of PATO:0000639 ! degenerate created_by: george creation_date: 2009-02-03T11:14:54Z @@ -14488,7 +13887,6 @@ name: biconcave def: "A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces." [PATOC:GVG] subset: value_slim is_a: PATO:0001857 ! concave -relationship: is_opposite_of PATO:0002040 ! biconvex [Term] id: PATO:0002040 @@ -14497,7 +13895,6 @@ def: "A shape quality inhering in a bearer by virtue of the bearer's being conve subset: value_slim xref: Image:http\://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx is_a: PATO:0001355 ! convex -relationship: is_opposite_of PATO:0002039 ! biconcave [Term] id: PATO:0002041 @@ -14515,9 +13912,6 @@ subset: value_slim synonym: "low anterior-posterior diameter" EXACT [] is_a: PATO:0001715 ! decreased diameter is_a: PATO:0002041 ! anterior-posterior diameter -intersection_of: PATO:0002041 ! anterior-posterior diameter -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002043 ! increased anterior-posterior diameter [Term] id: PATO:0002043 @@ -14527,9 +13921,6 @@ subset: value_slim synonym: "high anterior-posterior diameter" EXACT [] is_a: PATO:0001714 ! increased diameter is_a: PATO:0002041 ! anterior-posterior diameter -intersection_of: PATO:0002041 ! anterior-posterior diameter -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002042 ! decreased anterior-posterior diameter [Term] id: PATO:0002044 @@ -14609,9 +14000,6 @@ def: "An occurrence which is relatively high." [PATOC:GVG] synonym: "increased incidence" EXACT [] is_a: PATO:0000057 ! occurrence is_a: PATO:0002304 ! increased process quality -intersection_of: PATO:0000057 ! occurrence -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002052 ! decreased occurrence created_by: George Gkoutos creation_date: 2009-03-26T11:10:11Z @@ -14622,9 +14010,6 @@ def: "An occurrence which is relatively low." [PATOC:GVG] synonym: "decreased incidence" EXACT [] is_a: PATO:0000057 ! occurrence is_a: PATO:0002302 ! decreased process quality -intersection_of: PATO:0000057 ! occurrence -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002051 ! increased occurrence created_by: George Gkoutos creation_date: 2009-03-26T11:12:35Z @@ -14656,9 +14041,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001362 ! fragile is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001362 ! fragile -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002056 ! decreased fragility created_by: George Gkoutos creation_date: 2009-03-26T04:01:37Z @@ -14670,9 +14052,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001362 ! fragile is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001362 ! fragile -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002055 ! increased fragility created_by: George Gkoutos creation_date: 2009-03-26T04:02:14Z @@ -14683,9 +14062,6 @@ def: "An area which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0000586 ! increased size is_a: PATO:0001323 ! area -intersection_of: PATO:0001323 ! area -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002058 ! decreased area created_by: George Gkoutos creation_date: 2009-03-30T04:11:43Z @@ -14696,9 +14072,6 @@ def: "An area which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0000587 ! decreased size is_a: PATO:0001323 ! area -intersection_of: PATO:0001323 ! area -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002057 ! increased area created_by: George Gkoutos creation_date: 2009-03-30T04:12:11Z @@ -14787,7 +14160,6 @@ def: "A spatial pattern inhering in a bearer by virtue of the bearer's exhibitin subset: mpath_slim subset: value_slim is_a: PATO:0002067 ! stratification -relationship: is_opposite_of PATO:0002069 ! unstratified created_by: George Gkoutos creation_date: 2009-07-01T02:31:53Z @@ -14798,7 +14170,6 @@ def: "A spatial pattern inhering in a bearer by virtue of the bearer's lacking a subset: mpath_slim subset: value_slim is_a: PATO:0002067 ! stratification -relationship: is_opposite_of PATO:0002068 ! stratified created_by: George Gkoutos creation_date: 2009-07-01T02:33:41Z @@ -14823,9 +14194,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0002070 ! affinity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002070 ! affinity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002072 ! decreased affinity created_by: George Gkoutos creation_date: 2009-09-18T01:29:42Z @@ -14838,9 +14206,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0002070 ! affinity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002070 ! affinity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002071 ! increased affinity created_by: George Gkoutos creation_date: 2009-09-18T01:30:11Z @@ -14865,9 +14230,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0002073 ! avidity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002073 ! avidity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002075 ! decreased avidity created_by: George Gkoutos creation_date: 2009-09-18T01:45:56Z @@ -14880,9 +14242,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0002073 ! avidity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002073 ! avidity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002074 ! increased avidity created_by: George Gkoutos creation_date: 2009-09-18T01:45:59Z @@ -15107,7 +14466,6 @@ def: "A cellular quality inhering in a bearer by virtue of its stable specializa subset: mpath_slim subset: value_slim is_a: PATO:0001397 ! cellular potency -relationship: is_opposite_of PATO:0002100 ! undifferentiated created_by: george creation_date: 2009-10-05T12:58:54Z @@ -15118,7 +14476,6 @@ def: "A cellular quality inhering in a bearer by virtue of having not yet acquir subset: mpath_slim subset: value_slim is_a: PATO:0001397 ! cellular potency -relationship: is_opposite_of PATO:0002099 ! differentiated created_by: george creation_date: 2009-10-05T12:59:21Z @@ -15247,7 +14604,6 @@ subset: value_slim synonym: "permeable" RELATED [] synonym: "pierced" RELATED [] is_a: PATO:0002014 ! structure, cavities -relationship: is_opposite_of PATO:0001821 ! imperforate created_by: george creation_date: 2009-10-05T03:37:05Z @@ -15526,7 +14882,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0002138 ! edibility disjoint_from: PATO:0002140 ! inedible -relationship: is_opposite_of PATO:0002140 ! inedible created_by: george creation_date: 2009-10-26T01:21:34Z @@ -15538,7 +14893,6 @@ subset: disposition_slim subset: relational_slim subset: value_slim is_a: PATO:0002138 ! edibility -relationship: is_opposite_of PATO:0002139 ! edible created_by: george creation_date: 2009-10-26T01:22:27Z @@ -15575,9 +14929,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002136 ! radiopacity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002136 ! radiopacity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002145 ! decreased radiopacity created_by: george creation_date: 2009-10-30T03:30:39Z @@ -15589,9 +14940,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002136 ! radiopacity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002136 ! radiopacity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002144 ! increased radiopacity created_by: george creation_date: 2009-10-30T03:31:31Z @@ -15613,9 +14961,6 @@ subset: value_slim synonym: "attenuated" EXACT [] is_a: PATO:0002146 ! virulence is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002146 ! virulence -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002148 ! increased virulence created_by: george creation_date: 2009-10-30T05:05:02Z @@ -15626,9 +14971,6 @@ def: "A virulence that is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0002146 ! virulence is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002146 ! virulence -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002147 ! reduced virulence created_by: george creation_date: 2009-10-30T05:13:10Z @@ -15745,8 +15087,6 @@ def: "A concave quality inhering in a bearer by virtue of the bearer's forming o subset: value_slim is_a: PATO:0001594 ! arched is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001594 ! arched -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal created_by: george creation_date: 2009-11-26T02:34:06Z @@ -16022,7 +15362,6 @@ def: "A molecular quality that inheres in a molecular entity when it possesses a subset: value_slim is_a: PATO:0002190 ! aromaticity disjoint_from: PATO:0002192 ! non-aromatic -relationship: is_opposite_of PATO:0002192 ! non-aromatic created_by: George Gkoutos creation_date: 2010-03-10T03:25:59Z @@ -16032,7 +15371,6 @@ name: non-aromatic def: "A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic." [PATOC:JH] subset: value_slim is_a: PATO:0002190 ! aromaticity -relationship: is_opposite_of PATO:0002191 ! aromatic created_by: George Gkoutos creation_date: 2010-03-10T03:26:41Z @@ -16064,7 +15402,6 @@ def: "A quality which inheres in a molecular entity by virtue of the molecular e subset: value_slim is_a: PATO:0002193 ! electric charge disjoint_from: PATO:0002196 ! negative charge -relationship: is_opposite_of PATO:0002196 ! negative charge created_by: George Gkoutos creation_date: 2010-03-10T03:30:06Z @@ -16074,7 +15411,6 @@ name: negative charge def: "A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge." [PATOC:JH] subset: value_slim is_a: PATO:0002193 ! electric charge -relationship: is_opposite_of PATO:0002195 ! positive charge created_by: George Gkoutos creation_date: 2010-03-10T03:30:39Z @@ -16320,7 +15656,6 @@ def: "A quality inhering in a protein or a molecule by virtue of the bearer's ha subset: value_slim is_a: PATO:0002262 ! phosphorylation disjoint_from: PATO:0002263 ! dephosphorylated -relationship: is_opposite_of PATO:0002263 ! dephosphorylated created_by: george creation_date: 2010-07-09T01:50:14Z @@ -16332,9 +15667,6 @@ subset: value_slim synonym: "hyperphosphorylated" EXACT [] is_a: PATO:0002220 ! phosphorylated is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002220 ! phosphorylated -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002222 ! decreased phosphorylation created_by: george creation_date: 2010-07-09T01:51:52Z @@ -16346,9 +15678,6 @@ subset: value_slim synonym: "hypophosporylated" EXACT [] is_a: PATO:0002220 ! phosphorylated is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002220 ! phosphorylated -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002221 ! increased phosphorylation created_by: george creation_date: 2010-07-09T01:54:22Z @@ -16575,9 +15904,6 @@ subset: value_slim synonym: "increased force amplitude" EXACT [] is_a: PATO:0001035 ! force is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001035 ! force -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002246 ! decreased force created_by: george creation_date: 2010-08-04T11:12:20Z @@ -16589,9 +15915,6 @@ subset: value_slim synonym: "decreased force amplitude" EXACT [] is_a: PATO:0001035 ! force is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001035 ! force -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002245 ! increased force created_by: george creation_date: 2010-08-04T11:13:13Z @@ -16614,7 +15937,6 @@ subset: mpath_slim subset: value_slim is_a: PATO:0002247 ! degree of pigmentation disjoint_from: PATO:0002249 ! unpigmented -relationship: is_opposite_of PATO:0002249 ! unpigmented created_by: george creation_date: 2010-08-09T04:16:49Z @@ -16626,7 +15948,6 @@ subset: mpath_slim subset: value_slim synonym: "depigmented" EXACT [] is_a: PATO:0002247 ! degree of pigmentation -relationship: is_opposite_of PATO:0002248 ! pigmented created_by: george creation_date: 2010-08-09T04:17:04Z @@ -16639,9 +15960,6 @@ subset: value_slim synonym: "hyperpigmented" EXACT [] is_a: PATO:0002248 ! pigmented is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002248 ! pigmented -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002251 ! decreased pigmentation created_by: george creation_date: 2010-08-09T04:17:19Z @@ -16654,9 +15972,6 @@ subset: value_slim synonym: "hypopigmented" EXACT [] is_a: PATO:0002248 ! pigmented is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002248 ! pigmented -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002250 ! increased pigmentation created_by: george creation_date: 2010-08-09T04:17:37Z @@ -16780,7 +16095,6 @@ name: dephosphorylated def: "A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group." [url:http\://en.wikipedia.org/wiki/Dephosphorylation] subset: value_slim is_a: PATO:0002262 ! phosphorylation -relationship: is_opposite_of PATO:0002220 ! phosphorylated created_by: george creation_date: 2010-09-16T09:04:21Z @@ -16848,7 +16162,6 @@ subset: relational_slim subset: value_slim synonym: "accumulated" EXACT [] is_a: PATO:0002269 ! accumulation -relationship: is_opposite_of PATO:0002271 ! decreased accumulation created_by: george creation_date: 2010-10-26T02:00:20Z @@ -16859,7 +16172,6 @@ def: "An accumulation which is relative low." [PATOC:GVG] subset: relational_slim subset: value_slim is_a: PATO:0002269 ! accumulation -relationship: is_opposite_of PATO:0002270 ! increased accumulation created_by: george creation_date: 2010-10-26T02:04:45Z @@ -16960,9 +16272,6 @@ def: "A mobility which is relative high." [PATO:GVG] subset: value_slim is_a: PATO:0000299 ! mobile is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000299 ! mobile -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002283 ! decreased mobility created_by: george creation_date: 2011-03-09T09:16:03Z @@ -16973,9 +16282,6 @@ def: "A mobility which is relative low." [PATOC:GVG] subset: value_slim is_a: PATO:0000299 ! mobile is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000299 ! mobile -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002282 ! increased mobility created_by: george creation_date: 2011-03-09T09:16:47Z @@ -16995,7 +16301,6 @@ name: increased branchiness def: "Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:CVS] subset: value_slim is_a: PATO:0000402 ! branched -relationship: is_opposite_of PATO:0002286 ! decreased branchiness created_by: george creation_date: 2011-03-10T09:07:57Z @@ -17005,7 +16310,6 @@ name: decreased branchiness def: "Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:CVS] subset: value_slim is_a: PATO:0000402 ! branched -relationship: is_opposite_of PATO:0002285 ! increased branchiness created_by: george creation_date: 2011-03-10T09:08:37Z @@ -17016,9 +16320,6 @@ def: "An elasticity which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0001171 ! elastic is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001171 ! elastic -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002288 ! decreased elasticity created_by: George Gkoutos creation_date: 2011-03-30T11:50:21Z @@ -17029,9 +16330,6 @@ def: "An elasticity which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0001171 ! elastic is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001171 ! elastic -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002287 ! increased elasticity created_by: George Gkoutos creation_date: 2011-03-30T11:50:39Z @@ -17115,9 +16413,6 @@ def: "A cellular motility which is lower relative to the normal or average." [PA subset: value_slim is_a: PATO:0001488 ! cellular motility is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0001488 ! cellular motility -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002298 ! increased cellular motility [Term] id: PATO:0002298 @@ -17126,9 +16421,6 @@ def: "A cellular motility which is higher relative to the normal or average." [P subset: value_slim is_a: PATO:0001488 ! cellular motility is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0001488 ! cellular motility -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002297 ! decreased cellular motility [Term] id: PATO:0002299 @@ -17147,9 +16439,7 @@ id: PATO:0002300 name: increased quality def: "A quality that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0000069 ! deviation(from_normal) -intersection_of: PATO:0000001 ! quality -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002301 ! decreased quality +relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal created_by: George Gkoutos creation_date: 2011-06-16T06:39:43Z @@ -17158,9 +16448,7 @@ id: PATO:0002301 name: decreased quality def: "A quality that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0000069 ! deviation(from_normal) -intersection_of: PATO:0000001 ! quality -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002300 ! increased quality +relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal created_by: George Gkoutos creation_date: 2011-06-16T06:40:15Z @@ -17170,9 +16458,6 @@ name: decreased process quality def: "A quality of a process that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0001236 ! process quality is_a: PATO:0002301 ! decreased quality -intersection_of: PATO:0001236 ! process quality -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002304 ! increased process quality created_by: George Gkoutos creation_date: 2011-06-16T06:50:59Z @@ -17182,9 +16467,6 @@ name: decreased object quality def: "A quality of an object that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality is_a: PATO:0002301 ! decreased quality -intersection_of: PATO:0001241 ! physical object quality -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002305 ! increased object quality created_by: George Gkoutos creation_date: 2011-06-16T06:51:54Z @@ -17194,9 +16476,6 @@ name: increased process quality def: "A quality of a process that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0001236 ! process quality is_a: PATO:0002300 ! increased quality -intersection_of: PATO:0001236 ! process quality -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002302 ! decreased process quality created_by: George Gkoutos creation_date: 2011-06-16T06:53:08Z @@ -17206,9 +16485,6 @@ name: increased object quality def: "A quality of an object that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality is_a: PATO:0002300 ! increased quality -intersection_of: PATO:0001241 ! physical object quality -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002303 ! decreased object quality created_by: George Gkoutos creation_date: 2011-06-16T06:54:01Z @@ -17357,7 +16633,6 @@ creation_date: 2011-10-12T12:49:06Z id: PATO:0002321 name: hypoelliptic is_a: PATO:0002318 ! superelliptic -relationship: is_opposite_of PATO:0002322 ! hyperelliptic created_by: George Gkoutos creation_date: 2011-10-12T12:50:59Z @@ -17365,7 +16640,6 @@ creation_date: 2011-10-12T12:50:59Z id: PATO:0002322 name: hyperelliptic is_a: PATO:0002318 ! superelliptic -relationship: is_opposite_of PATO:0002321 ! hypoelliptic created_by: George Gkoutos creation_date: 2011-10-12T12:51:19Z @@ -17417,9 +16691,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0001475 ! increased position is_a: PATO:0002326 ! angle -intersection_of: PATO:0002326 ! angle -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002328 ! decreased angle to created_by: George Gkoutos creation_date: 2011-11-23T12:06:38Z @@ -17431,9 +16702,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0001476 ! decreased position is_a: PATO:0002326 ! angle -intersection_of: PATO:0002326 ! angle -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002327 ! increased angle to created_by: George Gkoutos creation_date: 2011-11-23T12:06:54Z @@ -17462,7 +16730,6 @@ def: "A physical quality inhering in a bearer by virtue of the bearer exhibiting subset: value_slim synonym: "resinous" RELATED [] is_a: PATO:0001431 ! adhesivity -relationship: is_opposite_of PATO:0002332 ! non-adhesive created_by: gkoutos creation_date: 2012-01-31T12:28:16Z @@ -17473,7 +16740,6 @@ def: "A physical quality inhering in a bearer by virtue of the bearer not exhibi subset: value_slim synonym: "non-resinous" RELATED [] is_a: PATO:0001431 ! adhesivity -relationship: is_opposite_of PATO:0002331 ! adhesive created_by: gkoutos creation_date: 2012-01-31T12:28:57Z @@ -17484,9 +16750,6 @@ def: "A adhesivity which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0002305 ! increased object quality is_a: PATO:0002331 ! adhesive -intersection_of: PATO:0002331 ! adhesive -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002334 ! decreased adhesivity created_by: gkoutos creation_date: 2012-01-31T12:32:43Z @@ -17496,9 +16759,6 @@ name: decreased adhesivity def: "A adhesivity which is relatively low." [PATOC:GVG] is_a: PATO:0002303 ! decreased object quality is_a: PATO:0002331 ! adhesive -intersection_of: PATO:0002331 ! adhesive -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002333 ! increased adhesivity created_by: gkoutos creation_date: 2012-01-31T12:42:22Z @@ -17679,7 +16939,6 @@ name: active def: "A quality of an physical object that is currently realizing one of its functions." [PATOC:RH] subset: attribute_slim is_a: PATO:0002353 ! activation quality -relationship: is_opposite_of PATO:0002355 ! inactive created_by: gkoutos creation_date: 2012-01-31T04:52:04Z @@ -17689,7 +16948,6 @@ name: inactive def: "A quality of a physical object that is currently realizing none of its functions." [PATOC:RH] subset: attribute_slim is_a: PATO:0002353 ! activation quality -relationship: is_opposite_of PATO:0002354 ! active created_by: gkoutos creation_date: 2012-01-31T04:52:14Z @@ -17750,9 +17008,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0002305 ! increased object quality is_a: PATO:0002360 ! tendency -intersection_of: PATO:0002360 ! tendency -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002362 ! decreased tendency created_by: gkoutos creation_date: 2012-03-16T06:31:57Z @@ -17765,9 +17020,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0002303 ! decreased object quality is_a: PATO:0002360 ! tendency -intersection_of: PATO:0002360 ! tendency -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002361 ! increased tendency created_by: gkoutos creation_date: 2012-03-16T06:32:57Z @@ -17786,7 +17038,6 @@ name: shortened def: "A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width." [PATOC:GVG] subset: value_slim is_a: PATO:0000052 ! shape -relationship: is_opposite_of PATO:0001154 ! elongated created_by: gkoutos creation_date: 2012-04-18T06:31:29Z @@ -17896,7 +17147,6 @@ def: "A structure quality inhering in a bearer by virtue of the bearer's being f subset: value_slim synonym: "air-filled" EXACT [] is_a: PATO:0002014 ! structure, cavities -relationship: is_opposite_of PATO:0002377 ! uninflated created_by: gkoutos creation_date: 2012-07-05T02:55:10Z @@ -17906,7 +17156,6 @@ name: uninflated def: "A structure quality inhering in a bearer by virtue of the bearer's being not filed with air." [PATOC:CVS] subset: value_slim is_a: PATO:0002014 ! structure, cavities -relationship: is_opposite_of PATO:0002376 ! inflated created_by: gkoutos creation_date: 2012-07-05T02:56:07Z @@ -17954,9 +17203,6 @@ def: "A waxiness which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0002305 ! increased object quality is_a: PATO:0002381 ! waxiness -intersection_of: PATO:0002381 ! waxiness -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002383 ! decreased waxiness created_by: gkoutos creation_date: 2012-07-05T03:18:03Z @@ -17966,9 +17212,6 @@ name: decreased waxiness def: "A waxiness which is relatively low." [] is_a: PATO:0002303 ! decreased object quality is_a: PATO:0002381 ! waxiness -intersection_of: PATO:0002381 ! waxiness -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002382 ! increased waxiness created_by: gkoutos creation_date: 2012-07-05T03:18:14Z @@ -18067,9 +17310,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0000515 ! tolerant to is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0000515 ! tolerant to -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002394 ! decreased tolerance to created_by: gkoutos creation_date: 2012-11-15T05:32:07Z @@ -18081,9 +17321,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0000515 ! tolerant to is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0000515 ! tolerant to -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002393 ! increased tolerance to created_by: gkoutos creation_date: 2012-11-15T05:33:05Z @@ -18539,7 +17776,6 @@ name: ornamented def: "A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures." [PATOC:AD] subset: value_slim is_a: PATO:0002440 ! ornamentation -relationship: is_opposite_of PATO:0002442 ! unornamented created_by: gkoutos creation_date: 2013-01-29T10:59:42Z @@ -18549,7 +17785,6 @@ name: unornamented def: "A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures." [PATOC:AD] subset: value_slim is_a: PATO:0002440 ! ornamentation -relationship: is_opposite_of PATO:0002441 ! ornamented created_by: gkoutos creation_date: 2013-01-29T11:00:20Z @@ -18644,7 +17879,6 @@ name: decondensed def: "A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed." [PATOC:JL] subset: value_slim is_a: PATO:0000141 ! structure -relationship: is_opposite_of PATO:0001485 ! condensed created_by: gkoutos creation_date: 2013-04-08T08:43:31Z @@ -18820,9 +18054,6 @@ def: "A physical quality inhering in a bearer by virtue of the bearer's increase subset: value_slim is_a: PATO:0002242 ! velocity is_a: PATO:0002305 ! increased object quality -intersection_of: PATO:0002242 ! velocity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002472 ! decreased velocity created_by: gkoutos creation_date: 2013-09-15T12:03:45Z @@ -18833,9 +18064,6 @@ def: "A physical quality inhering in a bearer by virtue of the bearer's decrease subset: value_slim is_a: PATO:0002242 ! velocity is_a: PATO:0002303 ! decreased object quality -intersection_of: PATO:0002242 ! velocity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0002471 ! increased velocity created_by: gkoutos creation_date: 2013-09-15T12:05:06Z @@ -19020,7 +18248,6 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "anterodorsally directed" EXACT [] is_a: PATO:0000133 ! orientation -relationship: is_opposite_of PATO:0002526 ! anterodistal orientation created_by: gkoutos creation_date: 2013-10-10T05:12:15Z @@ -19051,7 +18278,6 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "distally directed" EXACT [] is_a: PATO:0000133 ! orientation -relationship: is_opposite_of PATO:0002495 ! dorsal orientation created_by: gkoutos creation_date: 2013-10-10T05:14:37Z @@ -19062,7 +18288,6 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "dorsally directed" EXACT [] is_a: PATO:0000133 ! orientation -relationship: is_opposite_of PATO:0002494 ! distal orientation created_by: gkoutos creation_date: 2013-10-10T05:15:24Z @@ -19153,7 +18378,6 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "posterodorsally directed" EXACT [] is_a: PATO:0000133 ! orientation -relationship: is_opposite_of PATO:0002527 ! posterodistal orientation created_by: gkoutos creation_date: 2013-10-10T05:19:36Z @@ -19361,7 +18585,6 @@ name: anterodistal orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally." [PATOC:EJS] synonym: "antero-distal orientation" EXACT [] is_a: PATO:0000133 ! orientation -relationship: is_opposite_of PATO:0002491 ! anterodorsal orientation created_by: segerdel creation_date: 2014-03-11T11:28:39Z @@ -19371,7 +18594,6 @@ name: posterodistal orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally." [PATOC:EJS] synonym: "postero-distal orientation" EXACT [] is_a: PATO:0000133 ! orientation -relationship: is_opposite_of PATO:0002504 ! posterodorsal orientation created_by: segerdel creation_date: 2014-03-11T11:29:22Z @@ -19659,7 +18881,6 @@ name: complete structure def: "A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts." [PATOC:WD] subset: value_slim is_a: PATO:0000141 ! structure -relationship: is_opposite_of PATO:0005013 ! incomplete structure created_by: wasila.dahdul creation_date: 2014-09-25T15:11:47Z @@ -19669,7 +18890,6 @@ name: incomplete structure def: "A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities." [PATOC:WD] subset: value_slim is_a: PATO:0000141 ! structure -relationship: is_opposite_of PATO:0005012 ! complete structure created_by: wasila.dahdul creation_date: 2014-09-25T15:12:35Z @@ -19804,9 +19024,8 @@ creation_date: 2019-07-18T18:24:15Z id: PATO:0010003 name: increased propagation velocity def: "A propagation velocity that is higher than normal." [orcid:0000-0002-7073-9172] +is_a: PATO:0002304 ! increased process quality is_a: PATO:0010002 ! propagation velocity -intersection_of: PATO:0010002 ! propagation velocity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal created_by: dos creation_date: 2019-07-18T18:24:25Z @@ -19814,8 +19033,8 @@ creation_date: 2019-07-18T18:24:25Z id: PATO:0010004 name: decreased propagation velocity def: "A propagation velocity that is lower than normal." [orcid:0000-0002-7073-9172] -intersection_of: PATO:0010002 ! propagation velocity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +is_a: PATO:0002302 ! decreased process quality +is_a: PATO:0010002 ! propagation velocity created_by: dos creation_date: 2019-07-18T18:24:36Z @@ -19836,8 +19055,6 @@ subset: absent_slim subset: value_slim is_a: PATO:0000462 ! absent is_a: PATO:0000639 ! degenerate -intersection_of: PATO:0000462 ! absent -intersection_of: PATO:0000639 ! degenerate created_by: cjm [Term] @@ -19853,10 +19070,8 @@ id: PATO:0015003 name: decreased efficacy def: "A decrease in the ability of a process to produce its output." [PATOC:PortlandMeetingFeb2015] subset: value_slim +is_a: PATO:0002302 ! decreased process quality is_a: PATO:0015002 ! process efficacy -intersection_of: PATO:0015002 ! process efficacy -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015004 ! increased efficacy created_by: cjm [Term] @@ -19864,10 +19079,8 @@ id: PATO:0015004 name: increased efficacy def: "A increase in the ability of a process to produce its output." [PATOC:PortlandMeetingFeb2015] subset: value_slim +is_a: PATO:0002304 ! increased process quality is_a: PATO:0015002 ! process efficacy -intersection_of: PATO:0015002 ! process efficacy -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015003 ! decreased efficacy created_by: cjm [Term] @@ -19917,18 +19130,16 @@ name: increased humidity def: "An increase in humidity." [https://github.com/pato-ontology/pato/issues/90] subset: value_slim synonym: "humid" RELATED [] -intersection_of: PATO:0015009 ! humidity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015011 ! decreased humidity +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0015009 ! humidity [Term] id: PATO:0015011 name: decreased humidity def: "An decrease in humidity." [https://github.com/pato-ontology/pato/issues/90] subset: value_slim -intersection_of: PATO:0015009 ! humidity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015010 ! increased humidity +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0015009 ! humidity [Term] id: PATO:0015012 @@ -19950,18 +19161,16 @@ name: increased degree of illumination def: "An increase in illumination." [https://github.com/pato-ontology/pato/issues/89] subset: value_slim synonym: "illuminated" RELATED [] -intersection_of: PATO:0015013 ! degree of illumination -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015015 ! decreased degree of illumination +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0015013 ! degree of illumination [Term] id: PATO:0015015 name: decreased degree of illumination def: "An decrease in illumination." [https://github.com/pato-ontology/pato/issues/89] subset: value_slim -intersection_of: PATO:0015013 ! degree of illumination -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015014 ! increased degree of illumination +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0015013 ! degree of illumination [Term] id: PATO:0015016 @@ -20011,9 +19220,8 @@ name: increased combustibility def: "An increase in combustibility." [] subset: value_slim synonym: "combustible" EXACT [] -intersection_of: PATO:0015021 ! combustibility -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015023 ! decreased combustibility +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0015021 ! combustibility [Term] id: PATO:0015023 @@ -20021,26 +19229,24 @@ name: decreased combustibility def: "An decrease in combustibility." [] subset: value_slim synonym: "noncombustible" RELATED [] -intersection_of: PATO:0015021 ! combustibility -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015022 ! increased combustibility +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0015021 ! combustibility [Term] id: PATO:0015024 name: increased porosity def: "An increase in porosity." [https://github.com/pato-ontology/pato/issues/110] subset: value_slim -intersection_of: PATO:0000973 ! porosity -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +is_a: PATO:0000973 ! porosity +is_a: PATO:0002305 ! increased object quality [Term] id: PATO:0015025 name: decreased porosity def: "An decrease in porosity." [https://github.com/pato-ontology/pato/issues/110] subset: value_slim -intersection_of: PATO:0000973 ! porosity -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015024 ! increased porosity +is_a: PATO:0000973 ! porosity +is_a: PATO:0002303 ! decreased object quality [Term] id: PATO:0015026 @@ -20056,8 +19262,8 @@ name: increased stability def: "An increase in stability." [https://github.com/pato-ontology/pato/issues/113] subset: disposition_slim subset: value_slim -intersection_of: PATO:0015026 ! stability -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +is_a: PATO:0002305 ! increased object quality +is_a: PATO:0015026 ! stability [Term] id: PATO:0015028 @@ -20065,9 +19271,8 @@ name: decreased stability def: "A decrease in stability." [https://github.com/pato-ontology/pato/issues/113] subset: disposition_slim subset: value_slim -intersection_of: PATO:0015026 ! stability -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal -relationship: is_opposite_of PATO:0015027 ! increased stability +is_a: PATO:0002303 ! decreased object quality +is_a: PATO:0015026 ! stability [Term] id: PATO:0015029 @@ -20125,7 +19330,6 @@ def: "A physical quality inhering in a bearer by virtue of the bearer not being synonym: "undrinkable" EXACT [] is_a: PATO:0025000 ! potability disjoint_from: PATO:0025002 ! potable -relationship: is_opposite_of PATO:0025002 ! potable created_by: pbuttigieg creation_date: 2015-09-01T16:18:57Z @@ -20135,7 +19339,6 @@ name: potable def: "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration." [Wikipedia:https\://en.wikipedia.org/wiki/Drinking_water] synonym: "drinkable" EXACT [] is_a: PATO:0025000 ! potability -relationship: is_opposite_of PATO:0025001 ! non-potable created_by: pbuttigieg creation_date: 2015-09-01T16:19:02Z @@ -20427,16 +19630,13 @@ subset: mpath_slim subset: value_slim is_a: PATO:0000161 ! rate is_a: PATO:0045073 ! normal process quality -intersection_of: PATO:0000161 ! rate -intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045001 name: normal object quality def: "A quality of an object that has a value that is normal or average." [] is_a: PATO:0001241 ! physical object quality -intersection_of: PATO:0001241 ! physical object quality -intersection_of: has_relative_magnitude PATO:0000461 ! normal +relationship: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-21T14:11:01Z @@ -20447,8 +19647,6 @@ def: "An acidity which is relatively normal." [] subset: value_slim is_a: PATO:0001842 ! acidity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001842 ! acidity -intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045003 @@ -20457,8 +19655,6 @@ def: "A adhesivity which is relatively normal or average." [] subset: value_slim is_a: PATO:0002331 ! adhesive is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002331 ! adhesive -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20469,8 +19665,6 @@ def: "An affinity which is relatively normal or average." [] subset: value_slim is_a: PATO:0002070 ! affinity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002070 ! affinity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20481,8 +19675,6 @@ def: "An age which is relatively normal or average." [] subset: value_slim is_a: PATO:0000011 ! age is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000011 ! age -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20492,9 +19684,8 @@ name: normal avidity def: "An avidity which is relatively normal or average." [] subset: disposition_slim subset: value_slim +is_a: PATO:0002073 ! avidity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002073 ! avidity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20505,8 +19696,6 @@ def: "A behavioural quality of a process inhering in a bearer by virtue of the b subset: value_slim is_a: PATO:0001707 ! behavioural active is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001707 ! behavioural active -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20517,8 +19706,6 @@ def: "A cellular motility which is normal or average." [] subset: value_slim is_a: PATO:0001488 ! cellular motility is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001488 ! cellular motility -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20530,8 +19717,6 @@ subset: cell_quality subset: value_slim is_a: PATO:0000404 ! coiled is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000404 ! coiled -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20543,8 +19728,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0001159 ! concentrated is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001159 ! concentrated -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20556,8 +19739,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001690 ! contractile is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001690 ! contractile -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20569,8 +19750,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000769 ! coordinated is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000769 ! coordinated -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20581,8 +19760,6 @@ def: "A curvature which is relatively normal or average." [] subset: value_slim is_a: PATO:0000406 ! curved is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000406 ! curved -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20594,8 +19771,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0000040 ! distance is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000040 ! distance -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20606,8 +19781,6 @@ def: "An efficiency which is relatively normal or average." [] subset: value_slim is_a: PATO:0001678 ! efficient is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001678 ! efficient -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20618,8 +19791,6 @@ def: "An elasticity which is relatively normal or average." [] subset: value_slim is_a: PATO:0001171 ! elastic is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001171 ! elastic -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20631,8 +19802,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000273 ! fecundity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000273 ! fecundity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20644,8 +19813,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000888 ! female fertile is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000888 ! female fertile -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20657,8 +19824,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001720 ! female receptivity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001720 ! female receptivity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20670,8 +19835,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000955 ! fertile is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000955 ! fertile -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20683,8 +19846,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001544 ! flexible is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001544 ! flexible -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20695,8 +19856,6 @@ def: "A fluid flow which is relatively normal or average." [] subset: value_slim is_a: PATO:0002243 ! fluid flow rate is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002243 ! fluid flow rate -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20707,8 +19866,6 @@ def: "A fluorescence which is relatively normal or average." [] subset: value_slim is_a: PATO:0001290 ! fluorescent is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001290 ! fluorescent -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20719,8 +19876,6 @@ def: "A force which is relatively normal or average." [] subset: value_slim is_a: PATO:0001035 ! force is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001035 ! force -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20732,8 +19887,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001362 ! fragile is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001362 ! fragile -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20743,8 +19896,6 @@ name: normal life span def: "A life span which is relatively normal or average." [] is_a: PATO:0000050 ! life span is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000050 ! life span -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20756,8 +19907,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001685 ! magnetic is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001685 ! magnetic -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20769,8 +19918,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000891 ! male fertile is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000891 ! male fertile -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20782,8 +19929,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0001721 ! male receptivity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001721 ! male receptivity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20794,8 +19939,6 @@ def: "A mass which is relatively normal or average." [] subset: value_slim is_a: PATO:0000125 ! mass is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000125 ! mass -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20806,8 +19949,6 @@ def: "A density which is relatively normal or average." [] subset: value_slim is_a: PATO:0001164 ! dense is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001164 ! dense -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20818,8 +19959,6 @@ def: "A mobility which is relatively normal or average." [] subset: value_slim is_a: PATO:0000299 ! mobile is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000299 ! mobile -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20830,8 +19969,6 @@ def: "An odor quality of having relatively normal or average odor." [] subset: value_slim is_a: PATO:0001331 ! odorous is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001331 ! odorous -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20843,8 +19980,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0002027 ! osmolality is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002027 ! osmolality -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20856,8 +19991,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0001655 ! osmolarity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001655 ! osmolarity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20869,8 +20002,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000982 ! permeable is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000982 ! permeable -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20881,8 +20012,6 @@ def: "A quality inhering in a bearer by virtue of the bearer's being phosphoryla subset: value_slim is_a: PATO:0002220 ! phosphorylated is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002220 ! phosphorylated -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20895,8 +20024,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0000547 ! photosensitive is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000547 ! photosensitive -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20908,8 +20035,6 @@ subset: mpath_slim subset: value_slim is_a: PATO:0002248 ! pigmented is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002248 ! pigmented -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20920,8 +20045,6 @@ def: "A position which is relatively normal or average" [] subset: value_slim is_a: PATO:0000140 ! position is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000140 ! position -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20933,8 +20056,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0002326 ! angle is_a: PATO:0045040 ! normal position -intersection_of: PATO:0002326 ! angle -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20945,8 +20066,6 @@ def: "A distribution which is relatively normal or average" [] subset: value_slim is_a: PATO:0001566 ! distributed is_a: PATO:0045040 ! normal position -intersection_of: PATO:0001566 ! distributed -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20957,8 +20076,6 @@ def: "An elevation which is relatively normal or average" [] subset: value_slim is_a: PATO:0001687 ! elevation is_a: PATO:0045040 ! normal position -intersection_of: PATO:0001687 ! elevation -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20969,8 +20086,6 @@ def: "A pressure which is relatively normal or average" [] subset: value_slim is_a: PATO:0001025 ! pressure is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001025 ! pressure -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20981,8 +20096,6 @@ def: "A radioactivity which is relatively normal or average" [] subset: value_slim is_a: PATO:0001741 ! radioactive is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001741 ! radioactive -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20994,8 +20107,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002136 ! radiopacity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002136 ! radiopacity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21008,8 +20119,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0001178 ! resistant to is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001178 ! resistant to -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21021,8 +20130,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001806 ! sensitivity to irradiation is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001806 ! sensitivity to irradiation -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21035,8 +20142,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0000516 ! sensitive toward is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000516 ! sensitive toward -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21047,8 +20152,6 @@ def: "A size quality which is relatively normal or average" [] subset: value_slim is_a: PATO:0000117 ! size is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000117 ! size -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21059,8 +20162,6 @@ def: "An area which is relatively normal or average" [] subset: value_slim is_a: PATO:0001323 ! area is_a: PATO:0045050 ! normal size -intersection_of: PATO:0001323 ! area -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21071,8 +20172,6 @@ def: "A depth quality which is relatively normal or average" [] subset: value_slim is_a: PATO:0001595 ! depth is_a: PATO:0045050 ! normal size -intersection_of: PATO:0001595 ! depth -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21083,8 +20182,6 @@ def: "A height which is relatively normal or average" [] subset: value_slim is_a: PATO:0000119 ! height is_a: PATO:0045050 ! normal size -intersection_of: PATO:0000119 ! height -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21095,8 +20192,6 @@ def: "A length quality which is relatively normal or average" [] subset: value_slim is_a: PATO:0000122 ! length is_a: PATO:0045050 ! normal size -intersection_of: PATO:0000122 ! length -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21107,8 +20202,6 @@ def: "A diameter which is relatively normal or average" [] subset: value_slim is_a: PATO:0001334 ! diameter is_a: PATO:0045054 ! normal length -intersection_of: PATO:0001334 ! diameter -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21119,8 +20212,6 @@ def: "An anterior-posterior diameter which is relatively normal or average" [] subset: value_slim is_a: PATO:0002041 ! anterior-posterior diameter is_a: PATO:0045055 ! normal diameter -intersection_of: PATO:0002041 ! anterior-posterior diameter -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21131,8 +20222,6 @@ def: "A perimeter which is relatively normal or average" [] subset: value_slim is_a: PATO:0001711 ! perimeter is_a: PATO:0045054 ! normal length -intersection_of: PATO:0001711 ! perimeter -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21143,8 +20232,6 @@ def: "A circumference which is relatively normal or average" [] subset: value_slim is_a: PATO:0001648 ! circumference is_a: PATO:0045057 ! normal perimeter -intersection_of: PATO:0001648 ! circumference -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21155,8 +20242,6 @@ def: "A thickness which is relatively normal or average" [] subset: value_slim is_a: PATO:0000915 ! thickness is_a: PATO:0045050 ! normal size -intersection_of: PATO:0000915 ! thickness -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21168,8 +20253,6 @@ subset: mpath_slim subset: value_slim is_a: PATO:0000918 ! volume is_a: PATO:0045050 ! normal size -intersection_of: PATO:0000918 ! volume -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21180,8 +20263,6 @@ def: "A width which is relatively normal or average" [] subset: value_slim is_a: PATO:0000921 ! width is_a: PATO:0045050 ! normal size -intersection_of: PATO:0000921 ! width -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21194,8 +20275,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0001537 ! soluble in is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001537 ! soluble in -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21206,8 +20285,6 @@ def: "A speed which is relatively normal or average" [] subset: value_slim is_a: PATO:0000008 ! speed is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000008 ! speed -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21218,8 +20295,6 @@ def: "A strength which is relatively normal or average" [] subset: value_slim is_a: PATO:0001230 ! strength is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001230 ! strength -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21231,8 +20306,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001815 ! fatigability is_a: PATO:0045064 ! normal strength -intersection_of: PATO:0001815 ! fatigability -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21245,8 +20318,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0001152 ! susceptible toward is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001152 ! susceptible toward -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21257,8 +20328,6 @@ def: "A temperature which is relatively normal or average" [] subset: value_slim is_a: PATO:0000146 ! temperature is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000146 ! temperature -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21269,8 +20338,6 @@ def: "A tendency which is relatively normal or average" [] subset: value_slim is_a: PATO:0002360 ! tendency is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002360 ! tendency -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21283,8 +20350,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0000152 ! threshold is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000152 ! threshold -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21296,8 +20361,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0000515 ! tolerant to is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000515 ! tolerant to -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21309,8 +20372,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001439 ! tonicity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001439 ! tonicity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21322,8 +20383,6 @@ subset: cell_quality subset: value_slim is_a: PATO:0001620 ! turgor is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001620 ! turgor -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21332,8 +20391,7 @@ id: PATO:0045073 name: normal process quality def: "A quality of aprocess that has a value that is normal or average." [] is_a: PATO:0001236 ! process quality -intersection_of: PATO:0001236 ! process quality -intersection_of: has_relative_magnitude PATO:0000461 ! normal +relationship: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-21T14:11:01Z @@ -21342,8 +20400,8 @@ id: PATO:0045074 name: normal variability def: "A variability which is relatively normal or average" [] subset: value_slim -intersection_of: PATO:0001227 ! variant -intersection_of: has_relative_magnitude PATO:0000461 ! normal +is_a: PATO:0001227 ! variant +relationship: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21352,8 +20410,8 @@ id: PATO:0045075 name: normal variability of color def: "A variability which is relatively normal or average" [] subset: value_slim -intersection_of: PATO:0001615 ! variant color -intersection_of: has_relative_magnitude PATO:0000461 ! normal +is_a: PATO:0001615 ! variant color +relationship: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21362,8 +20420,8 @@ id: PATO:0045076 name: normal variability of rate def: "A variability of rate which is relatively normal or average" [] subset: value_slim -intersection_of: PATO:0001586 ! variability of rate -intersection_of: has_relative_magnitude PATO:0000461 ! normal +is_a: PATO:0001586 ! variability of rate +relationship: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21372,8 +20430,8 @@ id: PATO:0045077 name: normal variability of size def: "A variability of size which is relatively normal or average" [] subset: value_slim -intersection_of: PATO:0001956 ! variability of size -intersection_of: has_relative_magnitude PATO:0000461 ! normal +is_a: PATO:0001956 ! variability of size +relationship: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21382,8 +20440,8 @@ id: PATO:0045078 name: normal variability of temperature def: "A variability of temperature which is relatively normal or average" [] subset: value_slim -intersection_of: PATO:0001314 ! variant temperature -intersection_of: has_relative_magnitude PATO:0000461 ! normal +is_a: PATO:0001314 ! variant temperature +relationship: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21394,8 +20452,6 @@ def: "A velocity which is relatively normal or average" [] subset: value_slim is_a: PATO:0002242 ! velocity is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002242 ! velocity -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21406,8 +20462,6 @@ def: "A virulence which is relatively normal or average" [] subset: value_slim is_a: PATO:0002146 ! virulence is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002146 ! virulence -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21418,8 +20472,6 @@ def: "A viscosity which is relatively normal or average" [] subset: value_slim is_a: PATO:0000998 ! viscous is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0000998 ! viscous -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21430,8 +20482,6 @@ def: "A waxiness which is relatively normal or average" [] subset: value_slim is_a: PATO:0002381 ! waxiness is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0002381 ! waxiness -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21442,8 +20492,6 @@ def: "A wetness which is relatively normal or average" [] subset: value_slim is_a: PATO:0001823 ! wet is_a: PATO:0045001 ! normal object quality -intersection_of: PATO:0001823 ! wet -intersection_of: has_relative_magnitude PATO:0000461 ! normal created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21454,8 +20502,6 @@ def: "A duration quality of a process which is relatively normal." [] subset: value_slim is_a: PATO:0001309 ! duration is_a: PATO:0045073 ! normal process quality -intersection_of: PATO:0001309 ! duration -intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045085 @@ -21464,8 +20510,6 @@ def: "A duration quality of temperature quality of a process which is relatively subset: value_slim is_a: PATO:0001310 ! duration of temperature is_a: PATO:0045084 ! normal duration -intersection_of: PATO:0001310 ! duration of temperature -intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045086 @@ -21474,8 +20518,6 @@ def: "An occurrence which is relatively normal." [] subset: value_slim is_a: PATO:0000057 ! occurrence is_a: PATO:0045073 ! normal process quality -intersection_of: PATO:0000057 ! occurrence -intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045087 @@ -21485,8 +20527,6 @@ subset: mpath_slim subset: value_slim is_a: PATO:0000044 ! frequency is_a: PATO:0045000 ! normal rate -intersection_of: PATO:0000044 ! frequency -intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045088 @@ -21496,8 +20536,6 @@ subset: relational_slim subset: value_slim is_a: PATO:0001457 ! sensitivity of a process is_a: PATO:0045073 ! normal process quality -intersection_of: PATO:0001457 ! sensitivity of a process -intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045089 @@ -21507,8 +20545,6 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001459 ! aerobic (for occurrence) is_a: PATO:0045088 ! normal sensitivity of a process -intersection_of: PATO:0001459 ! aerobic (for occurrence) -intersection_of: has_relative_magnitude PATO:0000461 ! normal [Term] id: PATO:0045090 @@ -21525,7 +20561,6 @@ name: north def: "North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west." [Wikipedia:http\://en.wikipedia.org/wiki/North] subset: value_slim is_a: PATO:0045090 ! cardinal direction -relationship: is_opposite_of PATO:0045093 ! south created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21535,7 +20570,6 @@ name: east def: "East is one of the four cardinal directions or points of the compass. It is the opposite direction from west." [Wikipedia:http\://en.wikipedia.org/wiki/East] subset: value_slim is_a: PATO:0045090 ! cardinal direction -relationship: is_opposite_of PATO:0045094 ! west created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21545,7 +20579,6 @@ name: south def: "South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west." [Wikipedia:http\://en.wikipedia.org/wiki/South] subset: value_slim is_a: PATO:0045090 ! cardinal direction -relationship: is_opposite_of PATO:0045091 ! north created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21555,7 +20588,6 @@ name: west def: "West is one of the four cardinal directions or points of the compass. It is the opposite direction from east." [Wikipedia:http\://en.wikipedia.org/wiki/West] subset: value_slim is_a: PATO:0045090 ! cardinal direction -relationship: is_opposite_of PATO:0045092 ! east created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21575,8 +20607,8 @@ is_a: PATO:0000161 ! rate id: PATO:0055001 name: decreased spatial extent of a process def: "A spatial distribution of a process in which the process occupies a smaller length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type." [orcid:0000-0003-4148-4606] -intersection_of: PATO:0010005 ! spatial distribution of a process -intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal +is_a: PATO:0002302 ! decreased process quality +is_a: PATO:0010005 ! spatial distribution of a process created_by: midori creation_date: 2019-07-29T14:22:24Z @@ -21584,8 +20616,8 @@ creation_date: 2019-07-29T14:22:24Z id: PATO:0055002 name: increased spatial extent of a process def: "A spatial distribution of a process in which the process occupies a greater length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type." [https://orcid.org/0000-0003-4148-4606] -intersection_of: PATO:0010005 ! spatial distribution of a process -intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal +is_a: PATO:0002304 ! increased process quality +is_a: PATO:0010005 ! spatial distribution of a process created_by: midori creation_date: 2019-07-29T14:23:31Z @@ -21676,10 +20708,23 @@ is_a: has_ratio_quality ! has_ratio_quality [Typedef] id: has_part +name: has part name: has_part +namespace: external +def: "a core relation that holds between a whole and its part" [] def: "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2." [PATOC:CJM] comment: We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. xref: BFO:0000051 +property_value: IAO:0000111 "has part" xsd:string +property_value: IAO:0000112 "my body has part my brain (continuant parthood, two material entities)" xsd:string +property_value: IAO:0000112 "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" xsd:string +property_value: IAO:0000112 "this year has part this day (occurrent parthood)" xsd:string +property_value: IAO:0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." xsd:string +property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string +property_value: IAO:0000118 "has_part" xsd:string +property_value: RO:0001900 RO:0001901 +is_transitive: true [Typedef] id: has_ratio_quality @@ -21721,13 +20766,6 @@ id: is_measurement_of name: is_measurement_of namespace: pato.ontology -[Typedef] -id: is_opposite_of -name: is opposite of -xref: RO:0002604 -is_metadata_tag: true -is_class_level: true - [Typedef] id: is_unit_of name: is_unit_of @@ -21735,9 +20773,32 @@ namespace: pato.ontology [Typedef] id: part_of +name: part of name: part_of +namespace: external +def: "a core relation that holds between a part and its whole" [] xref: BFO:0000050 +property_value: IAO:0000111 "is part of" xsd:string +property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string +property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string +property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string +property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string +property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string +property_value: IAO:0000118 "part_of" xsd:string +property_value: RO:0001900 RO:0001901 +property_value: RO:0040042 BFO:0000002 +property_value: RO:0040042 BFO:0000003 +property_value: RO:0040042 BFO:0000004 +property_value: RO:0040042 BFO:0000017 +property_value: RO:0040042 BFO:0000019 +property_value: RO:0040042 BFO:0000020 +property_value: RO:0040042 BFO:0000031 +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf +property_value: seeAlso http://www.obofoundry.org/ro/#OBO_REL:part_of xsd:string is_transitive: true +inverse_of: has_part ! has part [Typedef] id: realized_by diff --git a/pato.owl b/pato.owl index 3fb33239..5dc5a140 100644 --- a/pato.owl +++ b/pato.owl @@ -204,18 +204,7 @@ - - 'anterior end of organism' is-opposite-of 'posterior end of organism' - 'increase in temperature' is-opposite-of 'decrease in temperature' - x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). - RO:0002604 - quality - is_opposite_of - true - true - is_opposite_of - is opposite of - + @@ -2365,6 +2354,12 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + @@ -11550,9 +11545,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely. - quality PATO:0000299 @@ -11572,8 +11572,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely. - quality fixed PATO:0000300 @@ -11628,8 +11633,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A speed which is relatively high. - high speed quality fast speed @@ -11662,8 +11672,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A speed which is relatively low. - slow slow speed quality @@ -11717,8 +11732,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An age which is relatively high. - quality PATO:0000308 @@ -11737,8 +11757,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An age which is relatively low. - quality PATO:0000309 @@ -12016,8 +12041,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color brightness which is relatively low. - dark quality PATO:0000327 @@ -12037,8 +12067,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color saturation which is of low purity. - pale quality dull @@ -12079,8 +12114,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency. - quality PATO:0000330 @@ -12101,8 +12141,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color. - quality PATO:0000331 @@ -12172,8 +12217,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color quality inhering in a bearer by virtue of the bearer's having color. - PATO:0000332 quality pigmented @@ -12281,9 +12331,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A compatibility quality inhering in a bearer by virtue of the bearer's being capable of harmonious coexistence. - quality PATO:0000344 @@ -12304,8 +12359,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A compatibility quality inhering in a bearer by virtue of the bearer's being incapable of harmonious coexistence. - quality PATO:0000345 @@ -12535,8 +12595,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point. - quality PATO:0000365 @@ -12615,8 +12680,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point. - quality PATO:0000370 @@ -12680,8 +12750,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A distance which is greater relative to the normal or average. - quality long distance PATO:0000374 @@ -12714,8 +12789,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A distance which is lesser relative to the normal or average. - quality short distance PATO:0000375 @@ -12792,8 +12872,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A frequency which is relatively high. - high frequency quality frequent @@ -12827,8 +12912,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A frequency which is relatively low. - low frequency quality infrequent @@ -12924,8 +13014,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A hardness quality of being rigid and resistant to pressure. - quality firm impenetrable @@ -12961,8 +13056,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A hardness quality of giving little resistance to pressure. - quality PATO:0000387 @@ -12994,8 +13094,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course. - quality PATO:0000389 @@ -13179,9 +13284,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A branchiness quality inhering in a bearer by virtue of the bearer's having branches. - ramified ramiform quality @@ -13225,8 +13335,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals). - PATO:0001363 spiral quality @@ -13426,8 +13541,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches. - quality PATO:0000414 @@ -13448,8 +13568,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals). - quality PATO:0000415 @@ -13534,8 +13659,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth. - quality PATO:0000422 @@ -13555,8 +13685,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth. - quality PATO:0000423 @@ -13609,8 +13744,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly. - quality PATO:0000427 @@ -13631,8 +13771,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances. - quality PATO:0000428 @@ -13768,8 +13913,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation. - uniform quality constant @@ -13801,8 +13951,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement. - quality PATO:0000440 @@ -14083,8 +14238,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's deviation from normal or average. - quality aberrant atypia @@ -14109,8 +14269,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average. - quality average PATO:0000461 @@ -14132,6 +14297,12 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + @@ -14146,7 +14317,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality denoting the lack of an entity. - PATO:0001996 absence absent from organism @@ -14171,8 +14341,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of being clearly visible. - quality distinct PATO:0000463 @@ -14193,8 +14368,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of not being clearly visible. - quality faint PATO:0000464 @@ -14237,8 +14417,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's existence. - quality present in organism PATO:0000467 @@ -14292,8 +14477,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An amount which is relatively high. - PATO:0000420 PATO:0000650 increased number @@ -14495,9 +14685,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent. - responsive quality PATO:0000487 @@ -14519,8 +14714,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent. - unresponsive quality PATO:0000488 @@ -14653,8 +14853,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration quality of a process which is relatively high. - PATO:0000715 high time increased period @@ -14692,8 +14897,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration quality of a process which is relatively low. - PATO:0000716 decreased period decreased time @@ -14795,8 +15005,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm. - quality PATO:0000504 @@ -14815,8 +15030,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm. - quality PATO:0000505 @@ -14912,8 +15132,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus. - insensitive quality resistant @@ -14970,8 +15195,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's having sensitivity toward an external stimulus. - sensitive quality PATO:0000516 @@ -15312,9 +15542,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity. - quality photoresistant PATO:0000546 @@ -15335,8 +15570,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A photosensitivity quality inhering in a bearer by virtue of the bearer's exhibiting photosensitivity. - quality PATO:0000547 @@ -15601,8 +15841,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A height which is relatively low. - quality short PATO:0000569 @@ -15634,8 +15879,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A height which is relatively high. - quality tall PATO:0000570 @@ -15689,8 +15939,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A length quality which is relatively large. - long quality PATO:0000573 @@ -15722,8 +15977,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A length quality which is relatively small. - short quality shortened @@ -15832,8 +16092,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A weight which is relatively high. - heavy high weight quality @@ -15866,8 +16131,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A weight which is relatively low. - light weight low weight quality @@ -15888,8 +16158,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ). - hypertrophy quality PATO:0000584 @@ -15910,8 +16185,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ). - PATO:0000412 shrunken quality @@ -15945,8 +16225,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A size quality which is relatively high. - PATO:0001202 quality big @@ -15983,8 +16268,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A size quality which is relatively low. - hypoplasia underdeveloped quality @@ -16062,8 +16352,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A thickness which is relatively high. - high thickness stout thickened @@ -16099,8 +16394,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A thickness which is relatively low. - low thickness quality slender @@ -16157,8 +16457,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A volume which is relatively high. - high volume quality large volume @@ -16192,8 +16497,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A volume which is relatively low. - low volume quality small volume @@ -16249,8 +16559,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A width which is relatively small. - quality narrow PATO:0000599 @@ -16282,8 +16597,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A width which is relatively large. - quality broad wide @@ -16384,9 +16704,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view. - quality blocked PATO:0000608 @@ -16425,8 +16750,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view. - quality PATO:0000610 @@ -16467,8 +16797,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation. - quality PATO:0000613 @@ -16487,8 +16822,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A pattern where all the repeated elements are oriented in the same direction. - quality PATO:0000614 @@ -16590,8 +16930,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A positional quality inhering in a bearer by virtue of the bearer's being overfilled. - quality PATO:0000619 @@ -16874,8 +17219,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled. - quality PATO:0000633 @@ -16992,10 +17342,15 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process. - degeneration quality PATO:0000639 @@ -17049,8 +17404,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity. - fused fused to quality @@ -17096,8 +17456,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells. - PATO:0000943 hyperplasia quality @@ -17121,8 +17486,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue. - PATO:0000942 hypoplasia quality @@ -17226,8 +17596,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity. - unfused quality PATO:0000651 @@ -17391,8 +17766,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color brightness which is relatively high. - light quality PATO:0000665 @@ -17652,8 +18032,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase. - quality PATO:0000688 @@ -17672,8 +18057,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent. - PATO:0000429 uninterrupted quality @@ -17694,8 +18084,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions. - PATO:0000426 interrupted quality @@ -17781,8 +18176,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase. - quality PATO:0000695 @@ -17845,8 +18245,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A texture quality inhering in a bearer by virtue of the bearer's irregular surface. - PATO:0001616 coarse quality @@ -17868,8 +18273,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities. - quality PATO:0000701 @@ -17945,8 +18355,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A threshold which is relatively high. - PATO:0000709 high threshold quality @@ -17991,8 +18406,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A threshold which is relatively low. - PATO:0000707 low threshold quality @@ -18558,9 +18978,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A balance quality inhering in a bearer by virtue of the bearer's having balance. - quality PATO:0000757 @@ -18579,8 +19004,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A balance quality inhering in a bearer by virtue of the bearer's lacking balance. - quality PATO:0000758 @@ -18637,8 +19067,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity. - hyperactive quality PATO:0000760 @@ -18670,8 +19105,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity. - hypoactive quality PATO:0000761 @@ -18818,9 +19258,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement. - quality PATO:0000769 @@ -18840,8 +19285,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement. - quality PATO:0000770 @@ -20179,9 +20629,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction. - quality PATO:0000888 @@ -20212,9 +20667,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male fertility quality inhering in a male by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. - quality male infertile PATO:0000890 @@ -20235,8 +20695,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. - quality PATO:0000891 @@ -20256,8 +20721,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. - quality female infertile PATO:0000892 @@ -20492,8 +20962,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A rate which is relatively low. - slow rate quality PATO:0000911 @@ -20526,8 +21001,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A rate which is relatively high. - fast rate high rate quality @@ -20861,9 +21341,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking organisation. - quality PATO:0000937 @@ -20883,8 +21368,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation. - quality PATO:0000938 @@ -21201,9 +21691,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. - quality PATO:0000955 @@ -21223,8 +21718,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. - quality PATO:0000956 @@ -21318,8 +21818,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy. - non-transparent quality clouding @@ -21342,8 +21847,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A optical quality inhering in a bearer by virtue of the bearer's lacking opacity. - clear hyaline quality @@ -21607,9 +22117,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion). - quality porous PATO:0000982 @@ -21630,8 +22145,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). - quality PATO:0000983 @@ -21651,9 +22171,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices. - quality PATO:0000984 @@ -21673,8 +22198,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices. - quality PATO:0000985 @@ -22491,8 +23021,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in an entity by virtue of the bearer's propensity to resist an external stimulus. - susceptibility quality PATO:0001043 @@ -22536,8 +23071,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus. - resistance quality PATO:0001046 @@ -23760,9 +24300,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus. - susceptible quality PATO:0001152 @@ -23784,8 +24329,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus. - insusceptible quality PATO:0001153 @@ -23807,8 +24357,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width. - quality PATO:0001154 @@ -23934,8 +24489,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A concentration which is higher relative to the normal or average. - high concentration quality PATO:0001162 @@ -23968,8 +24528,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A concentration which is lower relative to the normal or average. - low concentration quality PATO:0001163 @@ -24032,9 +24597,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired. - quality PATO:0001167 @@ -24053,8 +24623,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled. - quality PATO:0001168 @@ -24094,9 +24669,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way. - quality PATO:0001171 @@ -24117,8 +24697,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way. - quality PATO:0001172 @@ -24431,8 +25016,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent. - hyperresponsive increased responsivity quality @@ -24489,8 +25079,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent. - decreased responsivity hyporesponsive quality @@ -24694,8 +25289,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex. - serrate quality PATO:0001206 @@ -24945,8 +25545,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change. - variable quality PATO:0001227 @@ -24978,8 +25583,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A color saturation which is of high purity. - bright quality vivid @@ -25042,8 +25652,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located toward the back or upper surface of an organism relative to another entity. - dorsal posterior_to (human torso) superior_to (human head) @@ -25066,8 +25681,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity. - distal quality PATO:0001234 @@ -26464,8 +27084,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A temperature which is relatively high. - PATO:0000678 high temperature hot @@ -26499,8 +27124,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A temperature which is relatively low. - PATO:0000677 cold low temperature @@ -26534,8 +27164,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of temperature which is relatively low. - low variability of temperature quality PATO:0001307 @@ -26567,8 +27202,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of temperature which is relatively high. - high variability of temperature quality PATO:0001308 @@ -26643,8 +27283,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration of temperature which is lesser relative to the normal or average enduring or continuing in time. - quality PATO:0001311 @@ -26675,8 +27320,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time. - high duration of temperature quality PATO:0001312 @@ -26696,8 +27346,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature. - quality PATO:0001313 @@ -26716,8 +27371,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature. - quality PATO:0001314 @@ -26793,9 +27453,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli. - quality PATO:0001318 @@ -26816,8 +27481,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli. - quality PATO:0001319 @@ -27546,8 +28216,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere. - quality PATO:0001355 @@ -27690,9 +28365,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed. - quality PATO:0001362 @@ -28674,8 +29354,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having distinct structure. - quality PATO:0001411 @@ -28694,8 +29379,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure. - quality PATO:0001412 @@ -28774,8 +29464,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration which has regular start and/or end times. - quality PATO:0001416 @@ -28794,8 +29489,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times. - quality PATO:0001417 @@ -29557,9 +30257,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's dependence on oxygen. - quality PATO:0001455 @@ -29579,8 +30284,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's independence on oxygen. - quality PATO:0001456 @@ -29643,8 +30353,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen. - quality PATO:0001459 @@ -29664,8 +30379,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen. - quality PATO:0001460 @@ -29917,8 +30637,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A depth which is relatively low. - PATO:0001692 low depth shallow @@ -29993,8 +30718,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A position which is relatively high. - quality high position PATO:0001475 @@ -30026,8 +30756,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A positional which is relatively low. - quality low position PATO:0001476 @@ -30215,8 +30950,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together. - PATO:0001840 compact compressed @@ -30365,7 +31105,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001493 @@ -30379,7 +31124,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001494 @@ -30515,8 +31265,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development. - quality underdeveloped PATO:0001501 @@ -30691,8 +31446,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A functionality quality held by the bearer when the latter is able to perform a regular function(s). - quality PATO:0001510 @@ -30712,8 +31472,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s). - PATO:0001640 disfunctional functional failure @@ -31226,9 +31991,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid. - soluble quality PATO:0001537 @@ -31250,8 +32020,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A solubility quality inhering in a substance by virtue of the bearer's inability of a substance to dissolve in a liquid. - insoluble quality PATO:0001538 @@ -31371,8 +32146,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking. - bendy quality PATO:0001544 @@ -31393,8 +32173,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking. - stiff quality stiffness @@ -31489,8 +32274,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity toward an external stimulus which is higher than normal/average. - high sensitivity toward increased sensitivity quality @@ -31525,8 +32315,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity toward an external stimulus which is lower than normal/average. - decreased sensitivity low sensitivity toward quality @@ -31561,8 +32356,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of a process which is higher than normal or average. - high sensitivity of occurrent increased sensitivity of occurrent quality @@ -31596,8 +32396,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of a process which is lower than normal or average. - decreased sensitivity of occurrent low sensitivity of occurrent quality @@ -31631,8 +32436,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of occurrent to oxygen which is higher than normal or average. - high sensitivity of occurrent to oxygen quality PATO:0001553 @@ -31665,8 +32475,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity of a process to oxygen which is lower than normal or average. - low sensitivity of occurrent to oxygen quality PATO:0001554 @@ -31842,8 +32657,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mass which is lower than normal or average. - PATO:0000579 low mass small mass @@ -31877,8 +32697,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mass which is higher than normal or average. - PATO:0000578 high mass large mass @@ -31929,9 +32754,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up. - PATO:0001513 diffuse scattered @@ -31954,8 +32784,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up. - quality PATO:0001567 @@ -32096,8 +32931,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A pressure which is relatively low. - low pressure quality PATO:0001575 @@ -32129,8 +32969,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A pressure which is relatively high. - high pressure quality PATO:0001576 @@ -32162,8 +33007,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A permeability which is relatively high. - high permeability quality PATO:0001577 @@ -32196,8 +33046,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A permeability which is relatively low. - low permeability quality PATO:0001578 @@ -32251,8 +33106,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A contractility which is relatively high. - high contractility quality PATO:0001580 @@ -32285,8 +33145,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A contractility which is relatively low. - low contractility quality PATO:0001581 @@ -32338,8 +33203,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability which is relatively low. - low variability quality PATO:0001583 @@ -32371,8 +33241,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability which is relatively high. - high variability quality PATO:0001584 @@ -32451,8 +33326,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of rate which is relatively high. - high variability of rate quality PATO:0001587 @@ -32484,8 +33364,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of rate which is relatively low. - low variability of rate quality PATO:0001588 @@ -32577,8 +33462,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A curvature which is relatively high. - quality PATO:0001592 @@ -32609,8 +33499,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A curvature which is relatively low. - quality PATO:0001593 @@ -32680,8 +33575,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A depth quality which is relatively high. - PATO:0001666 deep quality @@ -32838,8 +33738,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A life span which is relatively high. - high life span quality PATO:0001603 @@ -32870,8 +33775,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A life span which is relatively low. - low life span quality PATO:0001604 @@ -33037,8 +33947,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of color which is relatively high. - high variability of color quality PATO:0001612 @@ -33070,8 +33985,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of color which is relatively low. - low variability of color quality PATO:0001613 @@ -33091,8 +34011,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color. - quality PATO:0001614 @@ -33111,8 +34036,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour. - quality PATO:0001615 @@ -33174,8 +34104,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tonicity which is relatively high. - high tonicity quality PATO:0001618 @@ -33208,8 +34143,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tonicity which is relatively low. - low tonicity quality PATO:0001619 @@ -33262,8 +34202,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A turgor which is relatively low. - low turgor quality PATO:0001621 @@ -33296,8 +34241,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A turgor which is relatively high. - high turgor quality PATO:0001622 @@ -33352,8 +34302,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s). - PATO:0001556 PATO:0001568 PATO:0001641 @@ -33396,8 +34351,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s). - high functionality quality PATO:0001625 @@ -33439,8 +34399,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality. - quality adequate PATO:0001627 @@ -33460,8 +34425,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality. - quality inadequate PATO:0001628 @@ -33598,9 +34568,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being essential or indispensable. - quality PATO:0001635 @@ -33619,8 +34594,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable. - quality PATO:0001636 @@ -33658,8 +34638,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable. - quality PATO:0001638 @@ -33678,8 +34663,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable. - quality PATO:0001639 @@ -33861,8 +34851,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A resistance to a stimulus which is relatively high. - high resistance to increased resistance quality @@ -33897,8 +34892,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A resistance to a stimulus which is relatively low. - decreased resistance low resistance to quality @@ -33947,8 +34947,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity. - aligned quality aligned to @@ -33970,8 +34975,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity. - misaligned unaligned with quality @@ -34026,8 +35036,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A osmolarity which is relatively low. - low osmolarity quality PATO:0001656 @@ -34060,8 +35075,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A osmolarity which is relatively high. - high osmolarity quality PATO:0001657 @@ -34196,8 +35216,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A solubility which is relatively high. - high solubility quality PATO:0001663 @@ -34231,8 +35256,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A solubility which is relatively low. - low solubility quality PATO:0001664 @@ -34344,8 +35374,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A susceptibility toward an external stimulus which is higher than normal/average. - high susceptibility toward increased susceptibility quality @@ -34380,8 +35415,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A susceptibility toward an external stimulus which is lower than normal/average. - decreased susceptibility low susceptibility toward quality @@ -34416,8 +35456,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A distribution which is relatively high. - high distribution quality PATO:0001671 @@ -34449,8 +35494,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A distribution which is relatively low. - low distribution quality PATO:0001672 @@ -34524,8 +35574,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An efficiency which is relatively low. - low efficiency quality PATO:0001675 @@ -34557,8 +35612,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An efficiency which is relatively high. - high efficiency quality PATO:0001676 @@ -34578,9 +35638,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An efficiency quality inhering in a bearer by virtue of the bearer's lacking efficiency. - quality PATO:0001677 @@ -34599,8 +35664,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency. - quality PATO:0001678 @@ -34713,8 +35783,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A magnetism which is relatively high. - high magnetism quality PATO:0001683 @@ -34747,8 +35822,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A magnetism which is relatively low. - low magnetism quality PATO:0001684 @@ -34769,9 +35849,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism. - quality PATO:0001685 @@ -34791,8 +35876,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A magnetic quality inhering in a bearer by virtue of the bearer's inability to exert magnitism. - quality PATO:0001686 @@ -34843,8 +35933,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elevation which is relatively high. - high elevation quality elevated @@ -34877,8 +35972,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elevation which is relatively low. - low elevation quality PATO:0001689 @@ -34898,9 +35998,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted. - quality PATO:0001690 @@ -34921,8 +36026,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted. - quality PATO:0001691 @@ -34965,8 +36075,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A viscosity which relatively high. - high viscosity quality PATO:0001693 @@ -34999,8 +36114,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A viscosity which relatively low. - low viscosity quality PATO:0001694 @@ -35033,8 +36153,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fecundity which is relatively high. - high fecundity quality PATO:0001695 @@ -35067,8 +36192,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fecundity which is relatively low. - low fecundity quality PATO:0001696 @@ -35101,8 +36231,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A photosensitivity which is relatively low. - low photosensitivity quality PATO:0001697 @@ -35136,8 +36271,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A photosensitivity which is relatively high. - high photosensitivity quality PATO:0001698 @@ -35159,8 +36299,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sleep pattern which has regular start and/or end times. - quality PATO:0001699 @@ -35179,8 +36324,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sleep pattern which has irregular start and/or end times. - quality PATO:0001700 @@ -35199,8 +36349,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development. - quality PATO:0001701 @@ -35299,9 +36454,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A behavioral quality inhering in a bearer by virtue of the bearer's disposition to lack activity. - quality PATO:0001706 @@ -35321,8 +36481,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity. - quality PATO:0001707 @@ -35433,8 +36598,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A perimeter which is relatively high. - quality PATO:0001712 @@ -35465,8 +36635,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A perimeter which is relatively low. - quality PATO:0001713 @@ -35497,8 +36672,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A diameter which is relatively large. - quality PATO:0001714 @@ -35529,8 +36709,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A diameter which is relatively small. - quality PATO:0001715 @@ -35549,8 +36734,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking. - quality resilient strong @@ -35694,8 +36884,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female receptivity which is relatively high. - high female receptivity quality PATO:0001723 @@ -35728,8 +36923,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female receptivity which is relatively low. - low female receptivity quality PATO:0001724 @@ -35762,8 +36962,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male receptivity which is relatively high. - high male receptivity quality PATO:0001725 @@ -35796,8 +37001,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male receptivity which is relatively low. - low male receptivity quality PATO:0001726 @@ -36135,8 +37345,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A radioactivity which is relatively low. - high radioactivity quality PATO:0001742 @@ -36168,8 +37383,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A radioactivity which is relatively high. - low radioactivity quality PATO:0001743 @@ -36290,8 +37510,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth. - hypoplastic growth pedomorphic growth quality @@ -36350,8 +37575,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth. - hyperplastic growth quality PATO:0001752 @@ -36513,7 +37743,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001760 @@ -36527,7 +37762,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001761 @@ -36541,7 +37781,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001762 @@ -36555,7 +37800,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + quality PATO:0001763 @@ -36581,8 +37831,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An age which is high relative to the normal or average. - high age quality PATO:0001764 @@ -36614,8 +37869,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An age which is low relative to the normal or average. - low age quality PATO:0001765 @@ -36838,8 +38098,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A flexibility which is relatively high. - high flexibility quality PATO:0001776 @@ -36872,8 +38137,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A flexibility which is relatively low. - low flexibility quality PATO:0001777 @@ -36906,8 +38176,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A strength which is relatively high. - high strength quality PATO:0001778 @@ -36939,8 +38214,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A strength which is relatively low. - weak quality PATO:0001779 @@ -37012,8 +38292,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An intensity which is relatively high. - high intensity quality PATO:0001782 @@ -37045,8 +38330,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An intensity which is relatively low. - low intensity quality PATO:0001783 @@ -37169,8 +38459,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A density which is higher relative to the normal or average. - high density quality PATO:0001788 @@ -37223,8 +38518,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A density which is lower relative to the normal or average. - low density quality PATO:0001790 @@ -37338,8 +38638,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coiling which is relatively high. - high coiling quality PATO:0001795 @@ -37372,8 +38677,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coiling which is relatively low. - low coiling quality PATO:0001796 @@ -37612,8 +38922,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity to irradiation which is relatively low. - low sensitivity to irradiation quality PATO:0001807 @@ -37646,8 +38961,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A sensitivity to irradiation which is relatively high. - high sensitivity to irradiation quality PATO:0001808 @@ -37811,8 +39131,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fatigability which is relatively high. - high fatigability quality PATO:0001816 @@ -37834,8 +39159,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fatigability which is relatively low. - low fatigability quality PATO:0001817 @@ -37856,8 +39186,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time. - quality PATO:0001818 @@ -37909,8 +39244,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having no opening. - unperforated quality PATO:0001821 @@ -37952,9 +39292,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid. - quality PATO:0001823 @@ -37974,8 +39319,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid. - quality PATO:0001824 @@ -38007,8 +39357,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wetness quality that is relatively high. - quality PATO:0001825 @@ -38039,8 +39394,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A wetness quality that is relatively low. - low wetness quality PATO:0001826 @@ -38129,8 +39489,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female fertility which is relatively low. - low female fertility quality PATO:0001830 @@ -38163,8 +39528,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A female fertility which is relatively high. - high female fertility quality PATO:0001831 @@ -38197,8 +39567,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male fertility which is relatively high. - high male fertility quality PATO:0001832 @@ -38231,8 +39606,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A male fertility which is relatively low. - low male fertility quality PATO:0001833 @@ -38265,8 +39645,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fertility which is relatively low. - low fertility quality PATO:0001834 @@ -38299,8 +39684,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fertility which is relatively high. - high fertility quality PATO:0001835 @@ -38363,8 +39753,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A flow that is relatively low. - low flow quality PATO:0001838 @@ -38396,8 +39791,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fluid flow that is relatively high. - high flow quality PATO:0001839 @@ -38481,8 +39881,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An acidity which is relatively low. - low acidity quality PATO:0001843 @@ -38514,8 +39919,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An acidity which is relatively high. - high acidity quality PATO:0001844 @@ -38793,8 +40203,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality in a bearer by virtue of the bearer's curving inward. - quality PATO:0001857 @@ -38845,8 +40260,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coordination which is relatively high. - high coordination quality PATO:0001859 @@ -38879,8 +40299,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A coordination which is relatively low. - low coordination quality PATO:0001860 @@ -38901,9 +40326,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve. - fascicled quality PATO:0001861 @@ -38945,8 +40375,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration. - quality PATO:0001863 @@ -39403,9 +40838,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water. - quality PATO:0001884 @@ -39425,8 +40865,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water. - quality PATO:0001885 @@ -39446,8 +40891,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water. - quality PATO:0001886 @@ -39467,8 +40917,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water. - quality PATO:0001887 @@ -39595,8 +41050,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An odor quality of having decreased odor. - quality PATO:0001892 @@ -39627,8 +41087,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An odor quality of having increased odor. - quality PATO:0001893 @@ -39679,8 +41144,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. - quality PATO:0001896 @@ -39699,8 +41169,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structure quality inhering in a bearer by virtue of the bearer's having a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. - quality PATO:0001897 @@ -39732,8 +41207,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A circumference which is relatively high. - quality PATO:0001898 @@ -39764,8 +41244,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A circumference which is relatively low. - quality PATO:0001899 @@ -39784,8 +41269,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north. - quality PATO:0001900 @@ -39804,8 +41294,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south. - quality PATO:0001901 @@ -40303,8 +41798,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fluorescence which is higher than normal. - high fluorescence quality PATO:0001926 @@ -40336,8 +41836,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fluorescence which is lower than normal. - low fluorescence quality PATO:0001927 @@ -40403,8 +41908,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape. - quality PATO:0001930 @@ -40423,8 +41933,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape. - quality PATO:0001931 @@ -40945,8 +42460,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of size which is relatively low. - low variability of size quality PATO:0001957 @@ -40978,8 +42498,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A variability of size which is relatively high. - high variability of size quality PATO:0001958 @@ -40999,8 +42524,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated. - quality PATO:0001959 @@ -41306,8 +42836,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex. - quality PATO:0001975 @@ -41737,8 +43272,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An amount which is relatively low. - PATO:0000419 PATO:0000468 decreased number @@ -41844,8 +43384,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. - PATO:0001569 decreased number of has decreased number of @@ -41881,8 +43426,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. - PATO:0001560 has extra parts of has increased number of @@ -41987,6 +43537,12 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + @@ -41994,7 +43550,6 @@ Association is weaker than correlation or proportionality. These relations may b A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave. - Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png quality PATO:0002007 @@ -42021,8 +43576,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave. - Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png quality PATO:0002008 @@ -42181,7 +43741,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + high magnitude quality PATO:0002017 @@ -42194,7 +43759,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + low magnitude quality PATO:0002018 @@ -42344,8 +43914,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time. - george gkoutos 2008-12-18T12:49:19Z quality @@ -42403,8 +43978,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An osmolality which is relatively low. - george 2009-01-27T10:55:33Z low osmolality @@ -42439,8 +44019,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An osmolality which is relatively high. - george 2009-01-27T10:56:19Z high osmolality @@ -42640,8 +44225,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer whose structure which does not deteriorate. - george 2009-02-03T11:14:54Z not degenerate @@ -42663,8 +44253,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces. - quality PATO:0002039 @@ -42683,8 +44278,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface. - Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx quality PATO:0002040 @@ -42736,8 +44336,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An anterior-posterior diameter quality which is relatively small. - low anterior-posterior diameter quality PATO:0002042 @@ -42769,8 +44374,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An anterior-posterior diameter quality which is relatively large. - high anterior-posterior diameter quality PATO:0002043 @@ -42962,8 +44572,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An occurrence which is relatively high. - George Gkoutos 2009-03-26T11:10:11Z increased incidence @@ -42996,8 +44611,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An occurrence which is relatively low. - George Gkoutos 2009-03-26T11:12:35Z decreased incidence @@ -43074,8 +44694,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fragility which is relatively high. - George Gkoutos 2009-03-26T04:01:37Z quality @@ -43109,8 +44734,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A fragility which is relatively low. - George Gkoutos 2009-03-26T04:02:14Z quality @@ -43144,8 +44774,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An area which is relatively high. - George Gkoutos 2009-03-30T04:11:43Z quality @@ -43178,8 +44813,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An area which is relatively low. - George Gkoutos 2009-03-30T04:12:11Z quality @@ -43378,8 +45018,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration. - George Gkoutos 2009-07-01T02:31:53Z quality @@ -43401,8 +45046,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration. - George Gkoutos 2009-07-01T02:33:41Z quality @@ -43460,8 +45110,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An affinity which is relatively high. - George Gkoutos 2009-09-18T01:29:42Z quality @@ -43496,8 +45151,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An affinity which is relatively low. - George Gkoutos 2009-09-18T01:30:11Z quality @@ -43556,8 +45216,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An avidity which is relatively high. - George Gkoutos 2009-09-18T01:45:56Z quality @@ -43592,8 +45257,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An avidity which is relatively low. - George Gkoutos 2009-09-18T01:45:59Z quality @@ -44102,8 +45772,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type. - george 2009-10-05T12:58:54Z quality @@ -44125,8 +45800,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A cellular quality inhering in a bearer by virtue of having not yet acquired a special structure of function. - george 2009-10-05T12:59:21Z quality @@ -44395,8 +46075,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes. - george 2009-10-05T03:37:05Z PATO:0000649 @@ -44999,9 +46684,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer being suitable for use as food. - george 2009-10-26T01:21:34Z quality @@ -45024,8 +46714,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food. - george 2009-10-26T01:22:27Z quality @@ -45109,8 +46804,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A radiopacity that is relatively high. - george 2009-10-30T03:30:39Z quality @@ -45144,8 +46844,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A radiopacity that is relatively low. - george 2009-10-30T03:31:31Z quality @@ -45202,8 +46907,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A virulence that is relatively low. - george 2009-10-30T05:05:02Z attenuated @@ -45237,8 +46947,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A virulence that is relatively high. - george 2009-10-30T05:13:10Z quality @@ -46149,9 +47864,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. - George Gkoutos 2010-03-10T03:25:59Z quality @@ -46172,8 +47892,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic. - George Gkoutos 2010-03-10T03:26:41Z quality @@ -46239,9 +47964,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge. - George Gkoutos 2010-03-10T03:30:06Z quality @@ -46262,8 +47992,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge. - George Gkoutos 2010-03-10T03:30:39Z quality @@ -46795,9 +48530,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group. - george 2010-07-09T01:50:14Z quality @@ -46830,8 +48570,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups. - george 2010-07-09T01:51:52Z hyperphosphorylated @@ -46865,8 +48610,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully. - george 2010-07-09T01:54:22Z hypophosporylated @@ -47379,8 +49129,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A force which relative high. - george 2010-08-04T11:12:20Z increased force amplitude @@ -47414,8 +49169,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A force which is relative low. - george 2010-08-04T11:13:13Z decreased force amplitude @@ -47465,9 +49225,14 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A degree of pigmentation quality inhering in a bearer by virtue of the bearer's having substances produced by living organisms that have a color resulting from selective color absorption. - george 2010-08-09T04:16:49Z quality @@ -47489,8 +49254,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A degree of pigmentation quality inhering in a bearer by virtue of the bearer's lacking substances produced by living organisms that have a color resulting from selective color absorption. - george 2010-08-09T04:17:04Z depigmented @@ -47525,8 +49295,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A degree of pigmentation quality that is relatively high. - george 2010-08-09T04:17:19Z hyperpigmented @@ -47561,8 +49336,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A degree of pigmentation quality that is relative low. - george 2010-08-09T04:17:37Z hypopigmented @@ -47831,8 +49611,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group. - george 2010-09-16T09:04:21Z quality @@ -47975,8 +49760,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner. - george 2010-10-26T02:00:20Z accumulated @@ -47999,8 +49789,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An accumulation which is relative low. - george 2010-10-26T02:04:45Z quality @@ -48244,8 +50039,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mobility which is relative high. - george 2011-03-09T09:16:03Z quality @@ -48278,8 +50078,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A mobility which is relative low. - george 2011-03-09T09:16:47Z quality @@ -48322,8 +50127,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity. - george 2011-03-10T09:07:57Z quality @@ -48344,8 +50154,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity. - george 2011-03-10T09:08:37Z quality @@ -48378,8 +50193,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elasticity which is relatively high. - George Gkoutos 2011-03-30T11:50:21Z quality @@ -48412,8 +50232,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An elasticity which is relatively low. - George Gkoutos 2011-03-30T11:50:39Z quality @@ -48609,8 +50434,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A cellular motility which is lower relative to the normal or average. - quality PATO:0002297 @@ -48641,8 +50471,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A cellular motility which is higher relative to the normal or average. - quality PATO:0002298 @@ -48696,6 +50531,12 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + @@ -48703,7 +50544,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality that has a value that is increased compared to normal or average. - George Gkoutos 2011-06-16T06:39:43Z quality @@ -48734,6 +50574,12 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + @@ -48741,7 +50587,6 @@ Association is weaker than correlation or proportionality. These relations may b A quality that has a value that is decreased compared to normal or average. - George Gkoutos 2011-06-16T06:40:15Z quality @@ -48773,8 +50618,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a process that has a value that is decreased compared to normal or average. - George Gkoutos 2011-06-16T06:50:59Z quality @@ -48806,8 +50656,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of an object that has a value that is decreased compared to normal or average. - George Gkoutos 2011-06-16T06:51:54Z quality @@ -48839,8 +50694,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a process that has a value that is increased compared to normal or average. - George Gkoutos 2011-06-16T06:53:08Z quality @@ -48872,8 +50732,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of an object that has a value that is increased compared to normal or average. - George Gkoutos 2011-06-16T06:54:01Z quality @@ -49230,7 +51095,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + George Gkoutos 2011-10-12T12:50:59Z quality @@ -49244,7 +51114,12 @@ Association is weaker than correlation or proportionality. These relations may b - + + + + + + George Gkoutos 2011-10-12T12:51:19Z quality @@ -49370,8 +51245,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An angle which is relatively high. - George Gkoutos 2011-11-23T12:06:38Z quality @@ -49405,8 +51285,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + An angle which is relatively low. - George Gkoutos 2011-11-23T12:06:54Z quality @@ -49470,8 +51355,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact. - gkoutos 2012-01-31T12:28:16Z quality @@ -49493,8 +51383,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact. - gkoutos 2012-01-31T12:28:57Z quality @@ -49528,8 +51423,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A adhesivity which is relatively high. - gkoutos 2012-01-31T12:32:43Z quality @@ -49562,8 +51462,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A adhesivity which is relatively low. - gkoutos 2012-01-31T12:42:22Z quality @@ -49982,8 +51887,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of an physical object that is currently realizing one of its functions. - gkoutos 2012-01-31T04:52:04Z quality @@ -50004,8 +51914,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality of a physical object that is currently realizing none of its functions. - gkoutos 2012-01-31T04:52:14Z quality @@ -50146,8 +52061,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tendency which is relatively high. - gkoutos 2012-03-16T06:31:57Z quality @@ -50182,8 +52102,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tendency which is relatively low. - gkoutos 2012-03-16T06:32:57Z quality @@ -50227,8 +52152,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width. - gkoutos 2012-04-18T06:31:29Z quality @@ -50480,8 +52410,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structure quality inhering in a bearer by virtue of the bearer's being filled with air. - gkoutos 2012-07-05T02:55:10Z air-filled @@ -50503,8 +52438,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A structure quality inhering in a bearer by virtue of the bearer's being not filed with air. - gkoutos 2012-07-05T02:56:07Z quality @@ -50622,8 +52562,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A waxiness which is relatively high. - gkoutos 2012-07-05T03:18:03Z quality @@ -50656,8 +52601,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A waxiness which is relatively low. - gkoutos 2012-07-05T03:18:14Z quality @@ -50878,8 +52828,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus. - gkoutos 2012-11-15T05:32:07Z quality @@ -50913,8 +52868,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus. - gkoutos 2012-11-15T05:33:05Z quality @@ -51928,8 +53888,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures. - gkoutos 2013-01-29T10:59:42Z quality @@ -51950,8 +53915,13 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures. - gkoutos 2013-01-29T11:00:20Z quality @@ -52166,8 +54136,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed. - gkoutos 2013-04-08T08:43:31Z quality @@ -52569,8 +54544,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position. - gkoutos 2013-09-15T12:03:45Z quality @@ -52603,8 +54583,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position. - gkoutos 2013-09-15T12:05:06Z quality @@ -53015,8 +55000,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally. - gkoutos 2013-10-10T05:12:15Z anterodorsally directed @@ -53082,8 +55072,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distally. - gkoutos 2013-10-10T05:14:37Z distally directed @@ -53105,8 +55100,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally. - gkoutos 2013-10-10T05:15:24Z dorsally directed @@ -53304,8 +55304,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally. - gkoutos 2013-10-10T05:19:36Z posterodorsally directed @@ -53777,8 +55782,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally. - segerdel 2014-03-11T11:28:39Z antero-distal orientation @@ -53799,8 +55809,13 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', + + + + + + An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally. - segerdel 2014-03-11T11:29:22Z postero-distal orientation @@ -54442,8 +56457,13 @@ height'). + + + + + + A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts. - wasila.dahdul 2014-09-25T15:11:47Z quality @@ -54464,8 +56484,13 @@ height'). + + + + + + A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities. - wasila.dahdul 2014-09-25T15:12:35Z quality @@ -54928,8 +56953,13 @@ height'). + + + + + + A decrease in the ability of a process to produce its output. - cjm quality PATO:0015003 @@ -54961,8 +56991,13 @@ height'). + + + + + + A increase in the ability of a process to produce its output. - cjm quality PATO:0015004 @@ -55106,8 +57141,13 @@ height'). + + + + + + An increase in humidity. - quality humid PATO:0015010 @@ -55139,8 +57179,13 @@ height'). + + + + + + An decrease in humidity. - quality PATO:0015011 @@ -55209,8 +57254,13 @@ height'). + + + + + + An increase in illumination. - quality illuminated PATO:0015014 @@ -55242,8 +57292,13 @@ height'). + + + + + + An decrease in illumination. - quality PATO:0015015 @@ -55395,8 +57450,13 @@ height'). + + + + + + An increase in combustibility. - combustible quality PATO:0015022 @@ -55422,8 +57482,13 @@ height'). + + + + + + An decrease in combustibility. - quality noncombustible PATO:0015023 @@ -55480,8 +57545,13 @@ height'). + + + + + + An decrease in porosity. - quality PATO:0015025 @@ -55564,8 +57634,13 @@ height'). + + + + + + A decrease in stability. - quality PATO:0015028 @@ -55707,9 +57782,14 @@ height'). + + + + + + A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration. - pbuttigieg 2015-09-01T16:18:57Z undrinkable @@ -55730,8 +57810,13 @@ height'). + + + + + + A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration. - pbuttigieg 2015-09-01T16:19:02Z drinkable @@ -58931,8 +61016,13 @@ height'). + + + + + + North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west. - Luke Slater 2017-12-22T14:16:43Z quality @@ -58953,8 +61043,13 @@ height'). + + + + + + East is one of the four cardinal directions or points of the compass. It is the opposite direction from west. - Luke Slater 2017-12-22T14:16:43Z quality @@ -58975,8 +61070,13 @@ height'). + + + + + + South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west. - Luke Slater 2017-12-22T14:16:43Z quality @@ -58997,8 +61097,13 @@ height'). + + + + + + West is one of the four cardinal directions or points of the compass. It is the opposite direction from east. - Luke Slater 2017-12-22T14:16:43Z quality @@ -59246,6 +61351,28 @@ This interpretation is *not* the same as an at-all-times relation + + + + x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). + is_opposite_of + quality + 'increase in temperature' is-opposite-of 'decrease in temperature' + is_opposite_of + is_opposite_of + 'anterior end of organism' is-opposite-of 'posterior end of organism' + is opposite of + RO:0002604 + + + + + + + RO:0002604 + quality + is_opposite_of + true + true + is_opposite_of + is_opposite_of + + + + @@ -280,6 +294,18 @@ + + + + + + + + + + + + @@ -356,18 +382,6 @@ - - - - RO:0002604 - quality - is_opposite_of - is_opposite_of - is_opposite_of - - - - @@ -4658,14 +4672,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely. + quality PATO:0000299 @@ -4685,13 +4694,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely. + quality fixed PATO:0000300 @@ -4746,13 +4750,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A speed which is relatively high. + high speed quality fast speed @@ -4785,13 +4784,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A speed which is relatively low. + slow slow speed quality @@ -4845,13 +4839,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An age which is relatively high. + quality PATO:0000308 @@ -4870,13 +4859,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An age which is relatively low. + quality PATO:0000309 @@ -5154,13 +5138,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color brightness which is relatively low. + dark quality PATO:0000327 @@ -5180,13 +5159,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color saturation which is of low purity. + pale quality dull @@ -5227,13 +5201,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency. + quality PATO:0000330 @@ -5254,13 +5223,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color. + quality PATO:0000331 @@ -5330,13 +5294,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color quality inhering in a bearer by virtue of the bearer's having color. + PATO:0000332 quality pigmented @@ -5444,14 +5403,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A compatibility quality inhering in a bearer by virtue of the bearer's being capable of harmonious coexistence. + quality PATO:0000344 @@ -5472,13 +5426,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A compatibility quality inhering in a bearer by virtue of the bearer's being incapable of harmonious coexistence. + quality PATO:0000345 @@ -5708,13 +5657,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point. + quality PATO:0000365 @@ -5793,13 +5737,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point. + quality PATO:0000370 @@ -5863,13 +5802,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A distance which is greater relative to the normal or average. + quality long distance PATO:0000374 @@ -5902,13 +5836,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A distance which is lesser relative to the normal or average. + quality short distance PATO:0000375 @@ -5985,13 +5914,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A frequency which is relatively high. + high frequency quality frequent @@ -6025,13 +5949,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A frequency which is relatively low. + low frequency quality infrequent @@ -6127,13 +6046,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A hardness quality of being rigid and resistant to pressure. + quality firm impenetrable @@ -6169,13 +6083,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A hardness quality of giving little resistance to pressure. + quality PATO:0000387 @@ -6207,13 +6116,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course. + quality PATO:0000389 @@ -6397,14 +6301,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A branchiness quality inhering in a bearer by virtue of the bearer's having branches. + ramified ramiform quality @@ -6448,13 +6347,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals). + PATO:0001363 spiral quality @@ -6654,13 +6548,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches. + quality PATO:0000414 @@ -6681,13 +6570,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals). + quality PATO:0000415 @@ -6772,13 +6656,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth. + quality PATO:0000422 @@ -6798,13 +6677,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth. + quality PATO:0000423 @@ -6857,13 +6731,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly. + quality PATO:0000427 @@ -6884,13 +6753,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances. + quality PATO:0000428 @@ -7026,13 +6890,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation. + uniform quality constant @@ -7064,13 +6923,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement. + quality PATO:0000440 @@ -7351,13 +7205,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's deviation from normal or average. + quality aberrant atypia @@ -7382,13 +7231,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average. + quality average PATO:0000461 @@ -7410,12 +7254,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - @@ -7430,6 +7268,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality denoting the lack of an entity. + PATO:0001996 absence absent from organism @@ -7454,13 +7293,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of being clearly visible. + quality distinct PATO:0000463 @@ -7481,13 +7315,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of not being clearly visible. + quality faint PATO:0000464 @@ -7530,13 +7359,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's existence. + quality present in organism PATO:0000467 @@ -7590,13 +7414,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An amount which is relatively high. + PATO:0000420 PATO:0000650 increased number @@ -7798,14 +7617,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent. + responsive quality PATO:0000487 @@ -7827,13 +7641,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent. + unresponsive quality PATO:0000488 @@ -7966,13 +7775,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration quality of a process which is relatively high. + PATO:0000715 high time increased period @@ -8010,13 +7814,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration quality of a process which is relatively low. + PATO:0000716 decreased period decreased time @@ -8118,13 +7917,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm. + quality PATO:0000504 @@ -8143,13 +7937,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm. + quality PATO:0000505 @@ -8245,13 +8034,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus. + insensitive quality resistant @@ -8308,13 +8092,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's having sensitivity toward an external stimulus. + sensitive quality PATO:0000516 @@ -8655,14 +8434,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity. + quality photoresistant PATO:0000546 @@ -8683,13 +8457,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A photosensitivity quality inhering in a bearer by virtue of the bearer's exhibiting photosensitivity. + quality PATO:0000547 @@ -8954,13 +8723,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A height which is relatively low. + quality short PATO:0000569 @@ -8992,13 +8756,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A height which is relatively high. + quality tall PATO:0000570 @@ -9052,13 +8811,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A length quality which is relatively large. + long quality PATO:0000573 @@ -9090,13 +8844,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A length quality which is relatively small. + short quality shortened @@ -9205,13 +8954,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A weight which is relatively high. + heavy high weight quality @@ -9244,13 +8988,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A weight which is relatively low. + light weight low weight quality @@ -9271,13 +9010,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ). + hypertrophy quality PATO:0000584 @@ -9298,13 +9032,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ). + PATO:0000412 shrunken quality @@ -9338,13 +9067,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A size quality which is relatively high. + PATO:0001202 quality big @@ -9381,13 +9105,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A size quality which is relatively low. + hypoplasia underdeveloped quality @@ -9465,13 +9184,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A thickness which is relatively high. + high thickness stout thickened @@ -9507,13 +9221,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A thickness which is relatively low. + low thickness quality slender @@ -9570,13 +9279,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A volume which is relatively high. + high volume quality large volume @@ -9610,13 +9314,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A volume which is relatively low. + low volume quality small volume @@ -9672,13 +9371,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A width which is relatively small. + quality narrow PATO:0000599 @@ -9710,13 +9404,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A width which is relatively large. + quality broad wide @@ -9817,14 +9506,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view. + quality blocked PATO:0000608 @@ -9863,13 +9547,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view. + quality PATO:0000610 @@ -9910,13 +9589,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation. + quality PATO:0000613 @@ -9935,13 +9609,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A pattern where all the repeated elements are oriented in the same direction. + quality PATO:0000614 @@ -10043,13 +9712,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A positional quality inhering in a bearer by virtue of the bearer's being overfilled. + quality PATO:0000619 @@ -10332,13 +9996,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled. + quality PATO:0000633 @@ -10455,15 +10114,10 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process. + degeneration quality PATO:0000639 @@ -10517,13 +10171,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity. + fused fused to quality @@ -10569,13 +10218,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells. + PATO:0000943 hyperplasia quality @@ -10599,13 +10243,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue. + PATO:0000942 hypoplasia quality @@ -10709,13 +10348,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity. + unfused quality PATO:0000651 @@ -10879,13 +10513,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color brightness which is relatively high. + light quality PATO:0000665 @@ -11145,13 +10774,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase. + quality PATO:0000688 @@ -11170,13 +10794,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent. + PATO:0000429 uninterrupted quality @@ -11197,13 +10816,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions. + PATO:0000426 interrupted quality @@ -11289,13 +10903,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase. + quality PATO:0000695 @@ -11358,13 +10967,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A texture quality inhering in a bearer by virtue of the bearer's irregular surface. + PATO:0001616 coarse quality @@ -11386,13 +10990,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities. + quality PATO:0000701 @@ -11468,13 +11067,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A threshold which is relatively high. + PATO:0000709 high threshold quality @@ -11519,13 +11113,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A threshold which is relatively low. + PATO:0000707 low threshold quality @@ -12091,14 +11680,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A balance quality inhering in a bearer by virtue of the bearer's having balance. + quality PATO:0000757 @@ -12117,13 +11701,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A balance quality inhering in a bearer by virtue of the bearer's lacking balance. + quality PATO:0000758 @@ -12180,13 +11759,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity. + hyperactive quality PATO:0000760 @@ -12218,13 +11792,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity. + hypoactive quality PATO:0000761 @@ -12371,14 +11940,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement. + quality PATO:0000769 @@ -12398,13 +11962,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement. + quality PATO:0000770 @@ -13742,14 +13301,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction. + quality PATO:0000888 @@ -13780,14 +13334,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male fertility quality inhering in a male by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + quality male infertile PATO:0000890 @@ -13808,13 +13357,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. + quality PATO:0000891 @@ -13834,13 +13378,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + quality female infertile PATO:0000892 @@ -14075,13 +13614,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A rate which is relatively low. + slow rate quality PATO:0000911 @@ -14114,13 +13648,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A rate which is relatively high. + fast rate high rate quality @@ -14454,14 +13983,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's lacking organisation. + quality PATO:0000937 @@ -14481,13 +14005,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation. + quality PATO:0000938 @@ -14804,14 +14323,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. + quality PATO:0000955 @@ -14831,13 +14345,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + quality PATO:0000956 @@ -14931,13 +14440,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy. + non-transparent quality clouding @@ -14960,13 +14464,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A optical quality inhering in a bearer by virtue of the bearer's lacking opacity. + clear hyaline quality @@ -15230,14 +14729,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + quality porous PATO:0000982 @@ -15258,13 +14752,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + quality PATO:0000983 @@ -15284,14 +14773,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices. + quality PATO:0000984 @@ -15311,13 +14795,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices. + quality PATO:0000985 @@ -16134,13 +15613,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in an entity by virtue of the bearer's propensity to resist an external stimulus. + susceptibility quality PATO:0001043 @@ -16184,13 +15658,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus. + resistance quality PATO:0001046 @@ -17413,14 +16882,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus. + susceptible quality PATO:0001152 @@ -17442,13 +16906,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus. + insusceptible quality PATO:0001153 @@ -17470,13 +16929,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width. + quality PATO:0001154 @@ -17602,13 +17056,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A concentration which is higher relative to the normal or average. + high concentration quality PATO:0001162 @@ -17641,13 +17090,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A concentration which is lower relative to the normal or average. + low concentration quality PATO:0001163 @@ -17710,14 +17154,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired. + quality PATO:0001167 @@ -17736,13 +17175,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled. + quality PATO:0001168 @@ -17782,14 +17216,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way. + quality PATO:0001171 @@ -17810,13 +17239,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way. + quality PATO:0001172 @@ -18129,13 +17553,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent. + hyperresponsive increased responsivity quality @@ -18192,13 +17611,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent. + decreased responsivity hyporesponsive quality @@ -18402,13 +17816,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex. + serrate quality PATO:0001206 @@ -18658,13 +18067,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change. + variable quality PATO:0001227 @@ -18696,13 +18100,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color saturation which is of high purity. + bright quality vivid @@ -18765,13 +18164,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial quality inhering in a bearer by virtue of the bearer's being located toward the back or upper surface of an organism relative to another entity. + dorsal posterior_to (human torso) superior_to (human head) @@ -18794,13 +18188,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity. + distal quality PATO:0001234 @@ -20190,13 +19579,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A temperature which is relatively high. + PATO:0000678 high temperature hot @@ -20230,13 +19614,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A temperature which is relatively low. + PATO:0000677 cold low temperature @@ -20268,13 +19647,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of temperature which is relatively low. + low variability of temperature quality PATO:0001307 @@ -20304,13 +19678,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of temperature which is relatively high. + high variability of temperature quality PATO:0001308 @@ -20385,13 +19754,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration of temperature which is lesser relative to the normal or average enduring or continuing in time. + quality PATO:0001311 @@ -20422,13 +19786,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time. + high duration of temperature quality PATO:0001312 @@ -20448,13 +19807,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature. + quality PATO:0001313 @@ -20473,13 +19827,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature. + quality PATO:0001314 @@ -20555,14 +19904,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli. + quality PATO:0001318 @@ -20583,13 +19927,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli. + quality PATO:0001319 @@ -21324,13 +20663,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere. + quality PATO:0001355 @@ -21473,14 +20807,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed. + quality PATO:0001362 @@ -22462,13 +21791,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's having distinct structure. + quality PATO:0001411 @@ -22487,13 +21811,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure. + quality PATO:0001412 @@ -22572,13 +21891,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration which has regular start and/or end times. + quality PATO:0001416 @@ -22597,13 +21911,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times. + quality PATO:0001417 @@ -23365,14 +22674,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's dependence on oxygen. + quality PATO:0001455 @@ -23392,13 +22696,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's independence on oxygen. + quality PATO:0001456 @@ -23461,13 +22760,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen. + quality PATO:0001459 @@ -23487,13 +22781,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen. + quality PATO:0001460 @@ -23745,13 +23034,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A depth which is relatively low. + PATO:0001692 low depth shallow @@ -23826,13 +23110,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A position which is relatively high. + quality high position PATO:0001475 @@ -23864,13 +23143,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A positional which is relatively low. + quality low position PATO:0001476 @@ -24058,13 +23332,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together. + PATO:0001840 compact compressed @@ -24213,12 +23482,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001493 @@ -24232,12 +23496,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001494 @@ -24373,13 +23632,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development. + quality underdeveloped PATO:0001501 @@ -24554,13 +23808,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A functionality quality held by the bearer when the latter is able to perform a regular function(s). + quality PATO:0001510 @@ -24580,13 +23829,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s). + PATO:0001640 disfunctional functional failure @@ -25099,14 +24343,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid. + soluble quality PATO:0001537 @@ -25128,13 +24367,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A solubility quality inhering in a substance by virtue of the bearer's inability of a substance to dissolve in a liquid. + insoluble quality PATO:0001538 @@ -25254,13 +24488,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking. + bendy quality PATO:0001544 @@ -25281,13 +24510,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking. + stiff quality stiffness @@ -25382,13 +24606,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity toward an external stimulus which is higher than normal/average. + high sensitivity toward increased sensitivity quality @@ -25423,13 +24642,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity toward an external stimulus which is lower than normal/average. + decreased sensitivity low sensitivity toward quality @@ -25464,13 +24678,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of a process which is higher than normal or average. + high sensitivity of occurrent increased sensitivity of occurrent quality @@ -25504,13 +24713,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of a process which is lower than normal or average. + decreased sensitivity of occurrent low sensitivity of occurrent quality @@ -25544,13 +24748,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of occurrent to oxygen which is higher than normal or average. + high sensitivity of occurrent to oxygen quality PATO:0001553 @@ -25583,13 +24782,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of a process to oxygen which is lower than normal or average. + low sensitivity of occurrent to oxygen quality PATO:0001554 @@ -25765,13 +24959,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mass which is lower than normal or average. + PATO:0000579 low mass small mass @@ -25805,13 +24994,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mass which is higher than normal or average. + PATO:0000578 high mass large mass @@ -25862,14 +25046,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up. + PATO:0001513 diffuse scattered @@ -25892,13 +25071,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up. + quality PATO:0001567 @@ -26039,13 +25213,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A pressure which is relatively low. + low pressure quality PATO:0001575 @@ -26077,13 +25246,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A pressure which is relatively high. + high pressure quality PATO:0001576 @@ -26115,13 +25279,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A permeability which is relatively high. + high permeability quality PATO:0001577 @@ -26154,13 +25313,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A permeability which is relatively low. + low permeability quality PATO:0001578 @@ -26214,13 +25368,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A contractility which is relatively high. + high contractility quality PATO:0001580 @@ -26253,13 +25402,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A contractility which is relatively low. + low contractility quality PATO:0001581 @@ -26309,13 +25453,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability which is relatively low. + low variability quality PATO:0001583 @@ -26345,13 +25484,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability which is relatively high. + high variability quality PATO:0001584 @@ -26428,13 +25562,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of rate which is relatively high. + high variability of rate quality PATO:0001587 @@ -26464,13 +25593,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of rate which is relatively low. + low variability of rate quality PATO:0001588 @@ -26562,13 +25686,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A curvature which is relatively high. + quality PATO:0001592 @@ -26599,13 +25718,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A curvature which is relatively low. + quality PATO:0001593 @@ -26675,13 +25789,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A depth quality which is relatively high. + PATO:0001666 deep quality @@ -26838,13 +25947,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A life span which is relatively high. + high life span quality PATO:0001603 @@ -26875,13 +25979,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A life span which is relatively low. + low life span quality PATO:0001604 @@ -27045,13 +26144,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of color which is relatively high. + high variability of color quality PATO:0001612 @@ -27081,13 +26175,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of color which is relatively low. + low variability of color quality PATO:0001613 @@ -27107,13 +26196,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color. + quality PATO:0001614 @@ -27132,13 +26216,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour. + quality PATO:0001615 @@ -27200,13 +26279,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tonicity which is relatively high. + high tonicity quality PATO:0001618 @@ -27239,13 +26313,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tonicity which is relatively low. + low tonicity quality PATO:0001619 @@ -27298,13 +26367,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A turgor which is relatively low. + low turgor quality PATO:0001621 @@ -27337,13 +26401,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A turgor which is relatively high. + high turgor quality PATO:0001622 @@ -27398,13 +26457,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s). + PATO:0001556 PATO:0001568 PATO:0001641 @@ -27447,13 +26501,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s). + high functionality quality PATO:0001625 @@ -27495,13 +26544,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality. + quality adequate PATO:0001627 @@ -27521,13 +26565,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality. + quality inadequate PATO:0001628 @@ -27664,14 +26703,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being essential or indispensable. + quality PATO:0001635 @@ -27690,13 +26724,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable. + quality PATO:0001636 @@ -27734,13 +26763,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable. + quality PATO:0001638 @@ -27759,13 +26783,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable. + quality PATO:0001639 @@ -27947,13 +26966,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A resistance to a stimulus which is relatively high. + high resistance to increased resistance quality @@ -27988,13 +27002,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A resistance to a stimulus which is relatively low. + decreased resistance low resistance to quality @@ -28043,13 +27052,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity. + aligned quality aligned to @@ -28071,13 +27075,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity. + misaligned unaligned with quality @@ -28132,13 +27131,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A osmolarity which is relatively low. + low osmolarity quality PATO:0001656 @@ -28171,13 +27165,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A osmolarity which is relatively high. + high osmolarity quality PATO:0001657 @@ -28312,13 +27301,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A solubility which is relatively high. + high solubility quality PATO:0001663 @@ -28352,13 +27336,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A solubility which is relatively low. + low solubility quality PATO:0001664 @@ -28470,13 +27449,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A susceptibility toward an external stimulus which is higher than normal/average. + high susceptibility toward increased susceptibility quality @@ -28511,13 +27485,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A susceptibility toward an external stimulus which is lower than normal/average. + decreased susceptibility low susceptibility toward quality @@ -28552,13 +27521,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A distribution which is relatively high. + high distribution quality PATO:0001671 @@ -28590,13 +27554,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A distribution which is relatively low. + low distribution quality PATO:0001672 @@ -28670,13 +27629,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An efficiency which is relatively low. + low efficiency quality PATO:0001675 @@ -28708,13 +27662,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An efficiency which is relatively high. + high efficiency quality PATO:0001676 @@ -28734,14 +27683,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An efficiency quality inhering in a bearer by virtue of the bearer's lacking efficiency. + quality PATO:0001677 @@ -28760,13 +27704,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency. + quality PATO:0001678 @@ -28879,13 +27818,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A magnetism which is relatively high. + high magnetism quality PATO:0001683 @@ -28918,13 +27852,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A magnetism which is relatively low. + low magnetism quality PATO:0001684 @@ -28945,14 +27874,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism. + quality PATO:0001685 @@ -28972,13 +27896,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A magnetic quality inhering in a bearer by virtue of the bearer's inability to exert magnitism. + quality PATO:0001686 @@ -29029,13 +27948,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elevation which is relatively high. + high elevation quality elevated @@ -29068,13 +27982,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elevation which is relatively low. + low elevation quality PATO:0001689 @@ -29094,14 +28003,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted. + quality PATO:0001690 @@ -29122,13 +28026,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted. + quality PATO:0001691 @@ -29171,13 +28070,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A viscosity which relatively high. + high viscosity quality PATO:0001693 @@ -29210,13 +28104,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A viscosity which relatively low. + low viscosity quality PATO:0001694 @@ -29249,13 +28138,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fecundity which is relatively high. + high fecundity quality PATO:0001695 @@ -29288,13 +28172,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fecundity which is relatively low. + low fecundity quality PATO:0001696 @@ -29327,13 +28206,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A photosensitivity which is relatively low. + low photosensitivity quality PATO:0001697 @@ -29367,13 +28241,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A photosensitivity which is relatively high. + high photosensitivity quality PATO:0001698 @@ -29395,13 +28264,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sleep pattern which has regular start and/or end times. + quality PATO:0001699 @@ -29420,13 +28284,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sleep pattern which has irregular start and/or end times. + quality PATO:0001700 @@ -29445,13 +28304,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development. + quality PATO:0001701 @@ -29550,14 +28404,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A behavioral quality inhering in a bearer by virtue of the bearer's disposition to lack activity. + quality PATO:0001706 @@ -29577,13 +28426,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity. + quality PATO:0001707 @@ -29694,13 +28538,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A perimeter which is relatively high. + quality PATO:0001712 @@ -29731,13 +28570,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A perimeter which is relatively low. + quality PATO:0001713 @@ -29768,13 +28602,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A diameter which is relatively large. + quality PATO:0001714 @@ -29805,13 +28634,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A diameter which is relatively small. + quality PATO:0001715 @@ -29830,13 +28654,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking. + quality resilient strong @@ -29980,13 +28799,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female receptivity which is relatively high. + high female receptivity quality PATO:0001723 @@ -30019,13 +28833,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female receptivity which is relatively low. + low female receptivity quality PATO:0001724 @@ -30058,13 +28867,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male receptivity which is relatively high. + high male receptivity quality PATO:0001725 @@ -30097,13 +28901,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male receptivity which is relatively low. + low male receptivity quality PATO:0001726 @@ -30441,13 +29240,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A radioactivity which is relatively low. + high radioactivity quality PATO:0001742 @@ -30479,13 +29273,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A radioactivity which is relatively high. + low radioactivity quality PATO:0001743 @@ -30606,13 +29395,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth. + hypoplastic growth pedomorphic growth quality @@ -30671,13 +29455,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth. + hyperplastic growth quality PATO:0001752 @@ -30839,12 +29618,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001760 @@ -30858,12 +29632,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001761 @@ -30877,12 +29646,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001762 @@ -30896,12 +29660,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001763 @@ -30927,13 +29686,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An age which is high relative to the normal or average. + high age quality PATO:0001764 @@ -30965,13 +29719,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An age which is low relative to the normal or average. + low age quality PATO:0001765 @@ -31194,13 +29943,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A flexibility which is relatively high. + high flexibility quality PATO:0001776 @@ -31233,13 +29977,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A flexibility which is relatively low. + low flexibility quality PATO:0001777 @@ -31272,13 +30011,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A strength which is relatively high. + high strength quality PATO:0001778 @@ -31310,13 +30044,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A strength which is relatively low. + weak quality PATO:0001779 @@ -31388,13 +30117,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An intensity which is relatively high. + high intensity quality PATO:0001782 @@ -31426,13 +30150,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An intensity which is relatively low. + low intensity quality PATO:0001783 @@ -31555,13 +30274,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A density which is higher relative to the normal or average. + high density quality PATO:0001788 @@ -31614,13 +30328,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A density which is lower relative to the normal or average. + low density quality PATO:0001790 @@ -31734,13 +30443,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coiling which is relatively high. + high coiling quality PATO:0001795 @@ -31773,13 +30477,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coiling which is relatively low. + low coiling quality PATO:0001796 @@ -32018,13 +30717,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity to irradiation which is relatively low. + low sensitivity to irradiation quality PATO:0001807 @@ -32057,13 +30751,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity to irradiation which is relatively high. + high sensitivity to irradiation quality PATO:0001808 @@ -32227,13 +30916,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fatigability which is relatively high. + high fatigability quality PATO:0001816 @@ -32255,13 +30939,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fatigability which is relatively low. + low fatigability quality PATO:0001817 @@ -32282,13 +30961,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time. + quality PATO:0001818 @@ -32340,13 +31014,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's having no opening. + unperforated quality PATO:0001821 @@ -32388,14 +31057,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid. + quality PATO:0001823 @@ -32415,13 +31079,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid. + quality PATO:0001824 @@ -32453,13 +31112,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wetness quality that is relatively high. + quality PATO:0001825 @@ -32490,13 +31144,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wetness quality that is relatively low. + low wetness quality PATO:0001826 @@ -32585,13 +31234,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female fertility which is relatively low. + low female fertility quality PATO:0001830 @@ -32624,13 +31268,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female fertility which is relatively high. + high female fertility quality PATO:0001831 @@ -32663,13 +31302,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male fertility which is relatively high. + high male fertility quality PATO:0001832 @@ -32702,13 +31336,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male fertility which is relatively low. + low male fertility quality PATO:0001833 @@ -32741,13 +31370,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fertility which is relatively low. + low fertility quality PATO:0001834 @@ -32780,13 +31404,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fertility which is relatively high. + high fertility quality PATO:0001835 @@ -32849,13 +31468,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A flow that is relatively low. + low flow quality PATO:0001838 @@ -32887,13 +31501,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fluid flow that is relatively high. + high flow quality PATO:0001839 @@ -32977,13 +31586,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An acidity which is relatively low. + low acidity quality PATO:0001843 @@ -33015,13 +31619,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An acidity which is relatively high. + high acidity quality PATO:0001844 @@ -33299,13 +31898,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality in a bearer by virtue of the bearer's curving inward. + quality PATO:0001857 @@ -33356,13 +31950,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coordination which is relatively high. + high coordination quality PATO:0001859 @@ -33395,13 +31984,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coordination which is relatively low. + low coordination quality PATO:0001860 @@ -33422,14 +32006,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve. + fascicled quality PATO:0001861 @@ -33471,13 +32050,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration. + quality PATO:0001863 @@ -33934,14 +32508,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water. + quality PATO:0001884 @@ -33961,13 +32530,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water. + quality PATO:0001885 @@ -33987,13 +32551,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water. + quality PATO:0001886 @@ -34013,13 +32572,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water. + quality PATO:0001887 @@ -34146,13 +32700,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An odor quality of having decreased odor. + quality PATO:0001892 @@ -34183,13 +32732,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An odor quality of having increased odor. + quality PATO:0001893 @@ -34240,13 +32784,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. + quality PATO:0001896 @@ -34265,13 +32804,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structure quality inhering in a bearer by virtue of the bearer's having a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. + quality PATO:0001897 @@ -34303,13 +32837,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A circumference which is relatively high. + quality PATO:0001898 @@ -34340,13 +32869,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A circumference which is relatively low. + quality PATO:0001899 @@ -34365,13 +32889,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north. + quality PATO:0001900 @@ -34390,13 +32909,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south. + quality PATO:0001901 @@ -34894,13 +33408,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fluorescence which is higher than normal. + high fluorescence quality PATO:0001926 @@ -34932,13 +33441,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fluorescence which is lower than normal. + low fluorescence quality PATO:0001927 @@ -35004,13 +33508,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape. + quality PATO:0001930 @@ -35029,13 +33528,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape. + quality PATO:0001931 @@ -35554,13 +34048,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of size which is relatively low. + low variability of size quality PATO:0001957 @@ -35590,13 +34079,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of size which is relatively high. + high variability of size quality PATO:0001958 @@ -35616,13 +34100,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated. + quality PATO:0001959 @@ -35928,13 +34407,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex. + quality PATO:0001975 @@ -36363,13 +34837,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An amount which is relatively low. + PATO:0000419 PATO:0000468 decreased number @@ -36475,13 +34944,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. + PATO:0001569 decreased number of has decreased number of @@ -36517,13 +34981,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. + PATO:0001560 has extra parts of has increased number of @@ -36628,12 +35087,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - @@ -36641,6 +35094,7 @@ Association is weaker than correlation or proportionality. These relations may b A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave. + Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png quality PATO:0002007 @@ -36667,13 +35121,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave. + Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png quality PATO:0002008 @@ -36832,12 +35281,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + high magnitude quality PATO:0002017 @@ -36850,12 +35294,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + low magnitude quality PATO:0002018 @@ -37005,13 +35444,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time. + george gkoutos 2008-12-18T12:49:19Z quality @@ -37069,13 +35503,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An osmolality which is relatively low. + george 2009-01-27T10:55:33Z low osmolality @@ -37110,13 +35539,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An osmolality which is relatively high. + george 2009-01-27T10:56:19Z high osmolality @@ -37316,13 +35740,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer whose structure which does not deteriorate. + george 2009-02-03T11:14:54Z not degenerate @@ -37344,13 +35763,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces. + quality PATO:0002039 @@ -37369,13 +35783,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface. + Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx quality PATO:0002040 @@ -37427,13 +35836,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An anterior-posterior diameter quality which is relatively small. + low anterior-posterior diameter quality PATO:0002042 @@ -37465,13 +35869,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An anterior-posterior diameter quality which is relatively large. + high anterior-posterior diameter quality PATO:0002043 @@ -37663,13 +36062,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An occurrence which is relatively high. + George Gkoutos 2009-03-26T11:10:11Z increased incidence @@ -37702,13 +36096,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An occurrence which is relatively low. + George Gkoutos 2009-03-26T11:12:35Z decreased incidence @@ -37785,13 +36174,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fragility which is relatively high. + George Gkoutos 2009-03-26T04:01:37Z quality @@ -37825,13 +36209,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fragility which is relatively low. + George Gkoutos 2009-03-26T04:02:14Z quality @@ -37865,13 +36244,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An area which is relatively high. + George Gkoutos 2009-03-30T04:11:43Z quality @@ -37904,13 +36278,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An area which is relatively low. + George Gkoutos 2009-03-30T04:12:11Z quality @@ -38109,13 +36478,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration. + George Gkoutos 2009-07-01T02:31:53Z quality @@ -38137,13 +36501,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration. + George Gkoutos 2009-07-01T02:33:41Z quality @@ -38201,13 +36560,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An affinity which is relatively high. + George Gkoutos 2009-09-18T01:29:42Z quality @@ -38242,13 +36596,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An affinity which is relatively low. + George Gkoutos 2009-09-18T01:30:11Z quality @@ -38307,13 +36656,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An avidity which is relatively high. + George Gkoutos 2009-09-18T01:45:56Z quality @@ -38348,13 +36692,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An avidity which is relatively low. + George Gkoutos 2009-09-18T01:45:59Z quality @@ -38863,13 +37202,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type. + george 2009-10-05T12:58:54Z quality @@ -38891,13 +37225,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A cellular quality inhering in a bearer by virtue of having not yet acquired a special structure of function. + george 2009-10-05T12:59:21Z quality @@ -39166,13 +37495,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes. + george 2009-10-05T03:37:05Z PATO:0000649 @@ -39775,14 +38099,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer being suitable for use as food. + george 2009-10-26T01:21:34Z quality @@ -39805,13 +38124,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food. + george 2009-10-26T01:22:27Z quality @@ -39895,13 +38209,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A radiopacity that is relatively high. + george 2009-10-30T03:30:39Z quality @@ -39935,13 +38244,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A radiopacity that is relatively low. + george 2009-10-30T03:31:31Z quality @@ -39998,13 +38302,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A virulence that is relatively low. + george 2009-10-30T05:05:02Z attenuated @@ -40038,13 +38337,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A virulence that is relatively high. + george 2009-10-30T05:13:10Z quality @@ -40955,14 +39249,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. + George Gkoutos 2010-03-10T03:25:59Z quality @@ -40983,13 +39272,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic. + George Gkoutos 2010-03-10T03:26:41Z quality @@ -41055,14 +39339,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge. + George Gkoutos 2010-03-10T03:30:06Z quality @@ -41083,13 +39362,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge. + George Gkoutos 2010-03-10T03:30:39Z quality @@ -41621,14 +39895,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group. + george 2010-07-09T01:50:14Z quality @@ -41661,13 +39930,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups. + george 2010-07-09T01:51:52Z hyperphosphorylated @@ -41701,13 +39965,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully. + george 2010-07-09T01:54:22Z hypophosporylated @@ -42220,13 +40479,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A force which relative high. + george 2010-08-04T11:12:20Z increased force amplitude @@ -42260,13 +40514,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A force which is relative low. + george 2010-08-04T11:13:13Z decreased force amplitude @@ -42316,14 +40565,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A degree of pigmentation quality inhering in a bearer by virtue of the bearer's having substances produced by living organisms that have a color resulting from selective color absorption. + george 2010-08-09T04:16:49Z quality @@ -42345,13 +40589,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A degree of pigmentation quality inhering in a bearer by virtue of the bearer's lacking substances produced by living organisms that have a color resulting from selective color absorption. + george 2010-08-09T04:17:04Z depigmented @@ -42386,13 +40625,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A degree of pigmentation quality that is relatively high. + george 2010-08-09T04:17:19Z hyperpigmented @@ -42427,13 +40661,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A degree of pigmentation quality that is relative low. + george 2010-08-09T04:17:37Z hypopigmented @@ -42702,13 +40931,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group. + george 2010-09-16T09:04:21Z quality @@ -42851,13 +41075,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner. + george 2010-10-26T02:00:20Z accumulated @@ -42880,13 +41099,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An accumulation which is relative low. + george 2010-10-26T02:04:45Z quality @@ -43130,13 +41344,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mobility which is relative high. + george 2011-03-09T09:16:03Z quality @@ -43169,13 +41378,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mobility which is relative low. + george 2011-03-09T09:16:47Z quality @@ -43218,13 +41422,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity. + george 2011-03-10T09:07:57Z quality @@ -43245,13 +41444,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity. + george 2011-03-10T09:08:37Z quality @@ -43284,13 +41478,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elasticity which is relatively high. + George Gkoutos 2011-03-30T11:50:21Z quality @@ -43323,13 +41512,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elasticity which is relatively low. + George Gkoutos 2011-03-30T11:50:39Z quality @@ -43525,13 +41709,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A cellular motility which is lower relative to the normal or average. + quality PATO:0002297 @@ -43562,13 +41741,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A cellular motility which is higher relative to the normal or average. + quality PATO:0002298 @@ -43622,13 +41796,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality that has a value that is increased compared to normal or average. + George Gkoutos 2011-06-16T06:39:43Z quality @@ -43659,13 +41828,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality that has a value that is decreased compared to normal or average. + George Gkoutos 2011-06-16T06:40:15Z quality @@ -43697,13 +41861,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a process that has a value that is decreased compared to normal or average. + George Gkoutos 2011-06-16T06:50:59Z quality @@ -43735,13 +41894,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of an object that has a value that is decreased compared to normal or average. + George Gkoutos 2011-06-16T06:51:54Z quality @@ -43773,13 +41927,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a process that has a value that is increased compared to normal or average. + George Gkoutos 2011-06-16T06:53:08Z quality @@ -43811,13 +41960,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of an object that has a value that is increased compared to normal or average. + George Gkoutos 2011-06-16T06:54:01Z quality @@ -44174,12 +42318,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + George Gkoutos 2011-10-12T12:50:59Z quality @@ -44193,12 +42332,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + George Gkoutos 2011-10-12T12:51:19Z quality @@ -44324,13 +42458,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An angle which is relatively high. + George Gkoutos 2011-11-23T12:06:38Z quality @@ -44364,13 +42493,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An angle which is relatively low. + George Gkoutos 2011-11-23T12:06:54Z quality @@ -44434,13 +42558,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact. + gkoutos 2012-01-31T12:28:16Z quality @@ -44462,13 +42581,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact. + gkoutos 2012-01-31T12:28:57Z quality @@ -44502,13 +42616,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A adhesivity which is relatively high. + gkoutos 2012-01-31T12:32:43Z quality @@ -44541,13 +42650,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A adhesivity which is relatively low. + gkoutos 2012-01-31T12:42:22Z quality @@ -44966,13 +43070,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of an physical object that is currently realizing one of its functions. + gkoutos 2012-01-31T04:52:04Z quality @@ -44993,13 +43092,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a physical object that is currently realizing none of its functions. + gkoutos 2012-01-31T04:52:14Z quality @@ -45140,13 +43234,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tendency which is relatively high. + gkoutos 2012-03-16T06:31:57Z quality @@ -45181,13 +43270,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tendency which is relatively low. + gkoutos 2012-03-16T06:32:57Z quality @@ -45231,13 +43315,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width. + gkoutos 2012-04-18T06:31:29Z quality @@ -45489,13 +43568,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structure quality inhering in a bearer by virtue of the bearer's being filled with air. + gkoutos 2012-07-05T02:55:10Z air-filled @@ -45517,13 +43591,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structure quality inhering in a bearer by virtue of the bearer's being not filed with air. + gkoutos 2012-07-05T02:56:07Z quality @@ -45641,13 +43710,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A waxiness which is relatively high. + gkoutos 2012-07-05T03:18:03Z quality @@ -45680,13 +43744,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A waxiness which is relatively low. + gkoutos 2012-07-05T03:18:14Z quality @@ -45907,13 +43966,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus. + gkoutos 2012-11-15T05:32:07Z quality @@ -45947,13 +44001,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus. + gkoutos 2012-11-15T05:33:05Z quality @@ -46967,13 +45016,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures. + gkoutos 2013-01-29T10:59:42Z quality @@ -46994,13 +45038,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures. + gkoutos 2013-01-29T11:00:20Z quality @@ -47215,13 +45254,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed. + gkoutos 2013-04-08T08:43:31Z quality @@ -47623,13 +45657,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position. + gkoutos 2013-09-15T12:03:45Z quality @@ -47662,13 +45691,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position. + gkoutos 2013-09-15T12:05:06Z quality @@ -48079,13 +46103,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally. + gkoutos 2013-10-10T05:12:15Z anterodorsally directed @@ -48151,13 +46170,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distally. + gkoutos 2013-10-10T05:14:37Z distally directed @@ -48179,13 +46193,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally. + gkoutos 2013-10-10T05:15:24Z dorsally directed @@ -48383,13 +46392,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally. + gkoutos 2013-10-10T05:19:36Z posterodorsally directed @@ -48861,13 +46865,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally. + segerdel 2014-03-11T11:28:39Z antero-distal orientation @@ -48888,13 +46887,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally. + segerdel 2014-03-11T11:29:22Z postero-distal orientation @@ -49536,13 +47530,8 @@ height'). - - - - - - A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts. + wasila.dahdul 2014-09-25T15:11:47Z quality @@ -49563,13 +47552,8 @@ height'). - - - - - - A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities. + wasila.dahdul 2014-09-25T15:12:35Z quality @@ -50028,13 +48012,8 @@ height'). - - - - - - A decrease in the ability of a process to produce its output. + cjm quality PATO:0015003 @@ -50065,13 +48044,8 @@ height'). - - - - - - A increase in the ability of a process to produce its output. + cjm quality PATO:0015004 @@ -50213,13 +48187,8 @@ height'). - - - - - - An increase in humidity. + quality humid PATO:0015010 @@ -50249,13 +48218,8 @@ height'). - - - - - - An decrease in humidity. + quality PATO:0015011 @@ -50322,13 +48286,8 @@ height'). - - - - - - An increase in illumination. + quality illuminated PATO:0015014 @@ -50358,13 +48317,8 @@ height'). - - - - - - An decrease in illumination. + quality PATO:0015015 @@ -50514,13 +48468,8 @@ height'). - - - - - - An increase in combustibility. + combustible quality PATO:0015022 @@ -50544,13 +48493,8 @@ height'). - - - - - - An decrease in combustibility. + quality noncombustible PATO:0015023 @@ -50603,13 +48547,8 @@ height'). - - - - - - An decrease in porosity. + quality PATO:0015025 @@ -50688,13 +48627,8 @@ height'). - - - - - - A decrease in stability. + quality PATO:0015028 @@ -50836,14 +48770,9 @@ height'). - - - - - - A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration. + pbuttigieg 2015-09-01T16:18:57Z undrinkable @@ -50864,13 +48793,8 @@ height'). - - - - - - A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration. + pbuttigieg 2015-09-01T16:19:02Z drinkable @@ -54022,13 +51946,8 @@ height'). - - - - - - North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west. + Luke Slater 2017-12-22T14:16:43Z quality @@ -54049,13 +51968,8 @@ height'). - - - - - - East is one of the four cardinal directions or points of the compass. It is the opposite direction from west. + Luke Slater 2017-12-22T14:16:43Z quality @@ -54076,13 +51990,8 @@ height'). - - - - - - South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west. + Luke Slater 2017-12-22T14:16:43Z quality @@ -54103,13 +52012,8 @@ height'). - - - - - - West is one of the four cardinal directions or points of the compass. It is the opposite direction from east. + Luke Slater 2017-12-22T14:16:43Z quality diff --git a/pato-full.json b/pato-full.json index 1f41f192..6265dcda 100644 --- a/pato-full.json +++ b/pato-full.json @@ -32,6 +32,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000487" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -73,6 +76,29 @@ }, "type" : "CLASS", "lbl" : "regulation of cell communication" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000487", + "meta" : { + "definition" : { + "val" : "A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "responsive", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000488" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "responsive to" }, { "id" : "http://purl.obolibrary.org/obo/GO_0044424", "meta" : { @@ -97,26 +123,6 @@ }, "type" : "CLASS", "lbl" : "obsolete intracellular part" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000487", - "meta" : { - "definition" : { - "val" : "A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "responsive", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "responsive to" }, { "id" : "http://purl.obolibrary.org/obo/GO_0010647", "meta" : { @@ -548,6 +554,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000498" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -640,6 +649,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000499" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000715" @@ -1534,6 +1546,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001857" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -1958,6 +1973,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001716" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -2302,6 +2320,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001777" } ] }, "type" : "CLASS", @@ -2363,6 +2384,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001776" } ] }, "type" : "CLASS", @@ -2543,6 +2567,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001779" } ] }, "type" : "CLASS", @@ -2576,6 +2603,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001778" } ] }, "type" : "CLASS", @@ -2622,6 +2652,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000330" } ] }, "type" : "CLASS", @@ -2798,6 +2831,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001790" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -2981,6 +3017,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001308" } ] }, "type" : "CLASS", @@ -3027,6 +3066,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001307" } ] }, "type" : "CLASS", @@ -3066,6 +3108,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001306" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000678" @@ -3093,6 +3138,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000677" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001305" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -3206,6 +3254,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001782" } ] }, "type" : "CLASS", @@ -3334,6 +3385,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001783" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3364,6 +3418,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001313" } ] }, "type" : "CLASS", @@ -3529,6 +3586,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001795" } ] }, "type" : "CLASS", @@ -3549,6 +3609,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001311" } ] }, "type" : "CLASS", @@ -3579,6 +3642,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001314" } ] }, "type" : "CLASS", @@ -3599,6 +3665,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000462" } ] }, "type" : "CLASS", @@ -3612,6 +3681,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001319" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3666,6 +3738,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001318" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3748,6 +3823,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001788" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3802,6 +3880,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, "type" : "CLASS", @@ -3826,6 +3907,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "See documentation here: http://code.google.com/p/phenotype-ontologies/wiki/ModelingOfAbsence" @@ -3885,6 +3969,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001796" } ] }, "type" : "CLASS", @@ -3905,6 +3992,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000460" } ] }, "type" : "CLASS", @@ -3920,6 +4010,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001312" } ] }, "type" : "CLASS", @@ -3955,6 +4048,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000463" } ] }, "type" : "CLASS", @@ -3975,6 +4071,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000464" } ] }, "type" : "CLASS", @@ -4294,6 +4393,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001997" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000650" }, { @@ -4689,6 +4791,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000414" } ] }, "type" : "CLASS", @@ -4876,6 +4981,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001363" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000415" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -4912,6 +5020,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000892" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5206,6 +5317,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001752" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5303,6 +5417,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001742" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5418,6 +5535,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001743" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5463,6 +5583,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000404" } ] }, "type" : "CLASS", @@ -5534,6 +5657,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000402" } ] }, "type" : "CLASS", @@ -5603,6 +5729,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000890" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5643,6 +5772,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000891" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5676,6 +5808,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000888" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5758,6 +5893,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000423" } ] }, "type" : "CLASS", @@ -5806,6 +5944,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001749" } ] }, "type" : "CLASS", @@ -5832,6 +5973,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000422" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5921,6 +6065,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000427" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5956,6 +6103,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000428" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6072,6 +6222,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001764" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6119,6 +6272,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001760" } ] }, "type" : "CLASS", @@ -6152,6 +6308,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001765" } ] }, "type" : "CLASS", @@ -6264,6 +6423,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001227" } ] }, "type" : "CLASS", @@ -6288,6 +6450,9 @@ "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001762" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6301,6 +6466,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001761" } ] }, "type" : "CLASS", @@ -6325,6 +6493,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001763" } ] }, "type" : "CLASS", @@ -6481,6 +6652,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001706" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6557,6 +6731,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001707" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6607,6 +6784,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001699" } ] }, "type" : "CLASS", @@ -6720,6 +6900,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001501" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6850,6 +7033,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001362" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6988,6 +7174,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001715" } ] }, "type" : "CLASS", @@ -7027,6 +7216,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001714" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -7042,6 +7234,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001713" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -7072,6 +7267,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001712" } ] }, "type" : "CLASS", @@ -7288,19 +7486,6 @@ }, "type" : "CLASS", "lbl" : "obsolete fearful" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000877", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete absolute respiratory rate value" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001725", "meta" : { @@ -7315,12 +7500,28 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001726" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", "lbl" : "increased male receptivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000877", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute respiratory rate value" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001726", "meta" : { @@ -7337,6 +7538,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001725" } ] }, "type" : "CLASS", @@ -7368,6 +7572,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001724" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -7401,6 +7608,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001723" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -8670,6 +8880,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015022" } ] }, "type" : "CLASS", @@ -8720,6 +8933,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015023" } ] }, "type" : "CLASS", @@ -8750,6 +8966,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015027" } ] }, "type" : "CLASS", @@ -8763,6 +8982,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015024" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -9077,6 +9299,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015011" } ] }, "type" : "CLASS", @@ -9092,6 +9317,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015010" } ] }, "type" : "CLASS", @@ -9142,6 +9370,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015015" } ] }, "type" : "CLASS", @@ -9157,6 +9388,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015014" } ] }, "type" : "CLASS", @@ -9220,6 +9454,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002196" } ] }, "type" : "CLASS", @@ -9233,6 +9470,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002195" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" }, { @@ -9370,6 +9610,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002192" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-10T03:25:59Z" @@ -9394,6 +9637,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002191" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -9509,6 +9755,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002147" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-30T05:13:10Z" @@ -9621,6 +9870,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002139" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-26T01:22:27Z" @@ -9729,6 +9981,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002148" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" }, { @@ -9773,6 +10028,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002145" } ] }, "type" : "CLASS", @@ -9786,6 +10044,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002144" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-30T03:31:31Z" }, { @@ -10207,6 +10468,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015004" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "cjm" @@ -10225,6 +10489,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015003" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "cjm" @@ -11358,6 +11625,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002099" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" }, { @@ -11798,6 +12068,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001821" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000649" @@ -12384,6 +12657,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002140" } ] }, "type" : "CLASS", @@ -12897,6 +13173,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001700" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -12962,6 +13241,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001698" } ] }, "type" : "CLASS", @@ -13008,6 +13290,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001697" } ] }, "type" : "CLASS", @@ -13091,6 +13376,9 @@ }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "This refers to the disposition of the bearer." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001690" } ] }, "type" : "CLASS", @@ -13177,6 +13465,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001691" } ] }, "type" : "CLASS", @@ -13210,6 +13501,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001696" } ] }, "type" : "CLASS", @@ -13282,6 +13576,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001695" } ] }, "type" : "CLASS", @@ -13300,6 +13597,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001694" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13338,6 +13638,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000370" } ] }, "type" : "CLASS", @@ -13404,6 +13707,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001693" } ] }, "type" : "CLASS", @@ -13460,6 +13766,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000438" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13549,6 +13858,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000328" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13566,6 +13878,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000365" } ] }, "type" : "CLASS", @@ -13634,6 +13949,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000375" } ] }, "type" : "CLASS", @@ -13767,6 +14085,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000374" } ] }, "type" : "CLASS", @@ -13780,6 +14101,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001863" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13935,6 +14259,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000380" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13959,6 +14286,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000381" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14032,6 +14362,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001234" } ] }, "type" : "CLASS", @@ -14078,6 +14411,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001233" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14095,6 +14431,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000386" } ] }, "type" : "CLASS", @@ -14136,6 +14475,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000387" } ] }, "type" : "CLASS", @@ -14736,6 +15078,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001657" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14803,6 +15148,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001654" } ] }, "type" : "CLASS", @@ -14907,6 +15255,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001653" } ] }, "type" : "CLASS", @@ -14925,6 +15276,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000665" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15035,6 +15389,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002527" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -15061,6 +15418,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001656" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15087,6 +15447,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001229" } ] }, "type" : "CLASS", @@ -15145,6 +15508,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001650" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15214,6 +15580,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001651" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15444,6 +15813,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001663" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15492,6 +15864,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000331" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000332" @@ -15734,6 +16109,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001670" } ] }, "type" : "CLASS", @@ -15749,6 +16127,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000440" } ] }, "type" : "CLASS", @@ -15782,6 +16163,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001664" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15879,6 +16263,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000336" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15896,6 +16283,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001678" } ] }, "type" : "CLASS", @@ -15945,6 +16335,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000344" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15981,6 +16374,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001677" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15996,6 +16392,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000345" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16016,6 +16415,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001676" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16093,6 +16495,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001675" } ] }, "type" : "CLASS", @@ -16213,6 +16618,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-03-11T11:28:39Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002491" } ] }, "type" : "CLASS", @@ -16232,6 +16640,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-03-11T11:29:22Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002504" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -16262,6 +16673,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001669" } ] }, "type" : "CLASS", @@ -16390,6 +16804,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001672" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16436,6 +16853,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001671" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16506,6 +16926,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001689" } ] }, "type" : "CLASS", @@ -16584,6 +17007,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001688" } ] }, "type" : "CLASS", @@ -16661,6 +17087,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001685" } ] }, "type" : "CLASS", @@ -16834,6 +17263,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001975" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16988,6 +17420,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001683" } ] }, "type" : "CLASS", @@ -17065,6 +17500,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001686" } ] }, "type" : "CLASS", @@ -17173,6 +17611,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001684" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17193,6 +17634,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001618" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17239,6 +17683,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001619" } ] }, "type" : "CLASS", @@ -17336,6 +17783,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001613" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17408,6 +17858,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001614" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17526,6 +17979,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001612" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17541,6 +17997,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000770" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17556,6 +18015,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001615" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17711,6 +18173,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000760" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17731,6 +18196,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000761" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17753,6 +18221,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001627" } ] }, "type" : "CLASS", @@ -17795,6 +18266,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001621" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17906,6 +18380,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001622" } ] }, "type" : "CLASS", @@ -17960,6 +18437,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001628" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18017,6 +18497,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001625" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -18051,6 +18534,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001624" } ] }, "type" : "CLASS", @@ -18077,6 +18563,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000769" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18148,6 +18637,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000308" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18165,6 +18657,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000309" } ] }, "type" : "CLASS", @@ -18178,6 +18673,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001638" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18250,6 +18748,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000299" } ] }, "type" : "CLASS", @@ -18328,6 +18829,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000304" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18445,6 +18949,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000303" } ] }, "type" : "CLASS", @@ -18471,6 +18978,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001639" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18486,6 +18996,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001636" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18516,6 +19029,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001635" } ] }, "type" : "CLASS", @@ -19791,6 +20307,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001603" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -19839,40 +20358,43 @@ "type" : "CLASS", "lbl" : "obsolete vocalization value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001602", + "id" : "http://purl.obolibrary.org/obo/PATO_0000758", "meta" : { "definition" : { - "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally expanded or increased in size.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A balance quality inhering in a bearer by virtue of the bearer's lacking balance.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "expanded", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000757" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "distended" + "lbl" : "unbalanced" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000758", + "id" : "http://purl.obolibrary.org/obo/PATO_0001602", "meta" : { "definition" : { - "val" : "A balance quality inhering in a bearer by virtue of the bearer's lacking balance.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally expanded or increased in size.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "expanded", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "unbalanced" + "lbl" : "distended" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000757", "meta" : { @@ -19882,6 +20404,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000758" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -19901,6 +20426,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001604" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -20169,6 +20697,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000709" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000708" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -20205,6 +20736,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000706" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000707" }, { @@ -20225,6 +20759,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000700" } ] }, "type" : "CLASS", @@ -20248,6 +20785,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000701" } ] }, "type" : "CLASS", @@ -20644,6 +21184,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002068" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-07-01T02:33:41Z" @@ -20683,6 +21226,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002069" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-07-01T02:31:53Z" @@ -20825,6 +21371,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002075" } ] }, "type" : "CLASS", @@ -20846,6 +21395,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002074" } ] }, "type" : "CLASS", @@ -20900,6 +21452,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002071" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-09-18T01:30:11Z" @@ -20966,6 +21521,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002072" } ] }, "type" : "CLASS", @@ -21226,6 +21784,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002100" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -21493,6 +22054,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002028" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-01-27T10:56:19Z" @@ -21537,6 +22101,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002029" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-01-27T10:55:33Z" @@ -21622,6 +22189,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001171" } ] }, "type" : "CLASS", @@ -21697,6 +22267,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001818" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2008-12-18T12:49:19Z" }, { @@ -21811,6 +22384,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001172" } ] }, "type" : "CLASS", @@ -21829,6 +22405,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000639" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-02-03T11:14:54Z" }, { @@ -21850,6 +22429,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002040" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -22265,6 +22847,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002042" } ] }, "type" : "CLASS", @@ -22337,6 +22922,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001192" } ] }, "type" : "CLASS", @@ -22372,6 +22960,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002043" } ] }, "type" : "CLASS", @@ -22524,6 +23115,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001194" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -22542,6 +23136,9 @@ "val" : "Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx" } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002039" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -22639,6 +23236,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002056" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-26T04:01:37Z" @@ -22662,6 +23262,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002051" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-26T11:12:35Z" }, { @@ -22709,6 +23312,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002057" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-30T04:12:11Z" @@ -22751,6 +23357,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-26T04:02:14Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002055" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -22772,6 +23381,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002058" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-30T04:11:43Z" @@ -22817,6 +23429,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002052" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" }, { @@ -23409,6 +24024,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-09-15T12:05:06Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002471" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -23535,6 +24153,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002472" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-09-15T12:03:45Z" }, { @@ -23701,6 +24322,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000300" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -23810,6 +24434,9 @@ }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "Use this term or an is_a child of this term when the entire shape of the object is known." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002008" } ] }, "type" : "CLASS", @@ -23828,6 +24455,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002007" } ] }, "type" : "CLASS", @@ -23970,6 +24600,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001153" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -24045,6 +24678,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001152" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -24245,6 +24881,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002002" + }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type." }, { @@ -24287,6 +24926,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002364" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -24323,6 +24965,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002001" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001560" }, { @@ -24441,6 +25086,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002017" } ] }, "type" : "CLASS", @@ -24500,6 +25148,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002018" } ] }, "type" : "CLASS", @@ -24520,6 +25171,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-10T05:14:37Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002495" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -24544,6 +25198,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001162" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -24579,6 +25236,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002494" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -24683,6 +25343,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001163" } ] }, "type" : "CLASS", @@ -24713,6 +25376,24 @@ }, "type" : "CLASS", "lbl" : "anteroventral orientation" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001167", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001168" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "damaged" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002498", "meta" : { @@ -24739,21 +25420,6 @@ }, "type" : "CLASS", "lbl" : "medial orientation" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001167", - "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "damaged" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002014", "meta" : { @@ -24821,6 +25487,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001167" } ] }, "type" : "CLASS", @@ -24963,19 +25632,6 @@ "id" : "http://www.geneontology.org/formats/oboInOwl#SubsetProperty", "type" : "PROPERTY", "lbl" : "subset_property" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001160", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete unconcentrated" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002491", "meta" : { @@ -24990,6 +25646,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002526" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -25002,6 +25661,19 @@ }, "type" : "CLASS", "lbl" : "anterodorsal orientation" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001160", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete unconcentrated" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000246", "meta" : { @@ -25052,6 +25724,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001577" } ] }, "type" : "CLASS", @@ -25142,6 +25817,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001575" } ] }, "type" : "CLASS", @@ -25209,6 +25887,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001578" } ] }, "type" : "CLASS", @@ -25518,6 +26199,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001576" } ] }, "type" : "CLASS", @@ -25777,6 +26461,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001588" } ] }, "type" : "CLASS", @@ -25862,6 +26549,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001587" } ] }, "type" : "CLASS", @@ -25981,6 +26671,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001580" } ] }, "type" : "CLASS", @@ -26034,6 +26727,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001581" } ] }, "type" : "CLASS", @@ -26194,6 +26890,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001584" } ] }, "type" : "CLASS", @@ -26259,6 +26958,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001583" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -26723,6 +27425,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001593" } ] }, "type" : "CLASS", @@ -26738,6 +27443,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001592" } ] }, "type" : "CLASS", @@ -26840,6 +27548,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001472" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001666" }, { @@ -26975,6 +27686,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002442" } ] }, "type" : "CLASS", @@ -27087,6 +27801,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002441" } ] }, "type" : "CLASS", @@ -27645,6 +28362,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-08T08:43:31Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001485" } ] }, "type" : "CLASS", @@ -27844,6 +28564,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000695" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -27992,6 +28715,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001537" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -28025,6 +28751,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000690" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000429" }, { @@ -28111,6 +28840,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001538" } ] }, "type" : "CLASS", @@ -28261,6 +28993,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001544" } ] }, "type" : "CLASS", @@ -28458,6 +29193,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001545" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -28523,6 +29261,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001550" } ] }, "type" : "CLASS", @@ -28669,6 +29410,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000689" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000426" }, { @@ -28834,6 +29578,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000688" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -29175,6 +29922,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001553" } ] }, "type" : "CLASS", @@ -29434,6 +30184,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001551" } ] }, "type" : "CLASS", @@ -29488,6 +30241,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001554" } ] }, "type" : "CLASS", @@ -29525,6 +30281,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001549" } ] }, "type" : "CLASS", @@ -29562,6 +30321,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001552" } ] }, "type" : "CLASS", @@ -29624,6 +30386,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001566" } ] }, "type" : "CLASS", @@ -29772,6 +30537,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001567" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001513" @@ -29972,6 +30740,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001562" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000578" @@ -30141,6 +30912,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000579" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001563" } ] }, "type" : "CLASS", @@ -30196,6 +30970,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000651" } ] }, "type" : "CLASS", @@ -30239,6 +31016,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001206" } ] }, "type" : "CLASS", @@ -30266,6 +31046,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000645" } ] }, "type" : "CLASS", @@ -30388,6 +31171,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000644" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -30733,6 +31519,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001701" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -31133,6 +31922,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000642" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -31323,6 +32115,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000468" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000470" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -31420,6 +32215,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001511" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -31457,6 +32255,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000327" } ] }, "type" : "CLASS", @@ -31489,6 +32290,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001640" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001510" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -32479,6 +33283,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000610" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -32544,6 +33351,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001931" } ] }, "type" : "CLASS", @@ -32559,6 +33369,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001930" } ] }, "type" : "CLASS", @@ -32585,6 +33398,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000599" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -32853,6 +33669,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000633" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -32970,6 +33789,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000608" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -32977,26 +33799,29 @@ "type" : "CLASS", "lbl" : "open" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001945", + "id" : "http://purl.obolibrary.org/obo/PATO_0000613", "meta" : { "definition" : { - "val" : "A moderate yellow-orange to orange color.", - "xrefs" : [ "wordreference:wordreference" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000614" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "ochre" + "lbl" : "disoriented" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000613", + "id" : "http://purl.obolibrary.org/obo/PATO_0001945", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A moderate yellow-orange to orange color.", + "xrefs" : [ "wordreference:wordreference" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -33005,7 +33830,7 @@ } ] }, "type" : "CLASS", - "lbl" : "disoriented" + "lbl" : "ochre" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001946", "meta" : { @@ -33075,35 +33900,38 @@ "type" : "CLASS", "lbl" : "wholly anterioralized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001944", + "id" : "http://purl.obolibrary.org/obo/PATO_0000614", "meta" : { "definition" : { - "val" : "A color consisting of yellow and orange hue.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A pattern where all the repeated elements are oriented in the same direction.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000613" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "yellow orange" + "lbl" : "oriented" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000614", + "id" : "http://purl.obolibrary.org/obo/PATO_0001944", "meta" : { "definition" : { - "val" : "A pattern where all the repeated elements are oriented in the same direction.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A color consisting of yellow and orange hue.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "oriented" + "lbl" : "yellow orange" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000628", "meta" : { @@ -33169,6 +33997,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001957" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -33199,6 +34030,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001861" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -33414,6 +34248,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001958" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -33653,6 +34490,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002038" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -33786,6 +34626,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000619" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -34249,6 +35092,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-09-25T15:11:47Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0005013" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -34273,6 +35119,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "wasila.dahdul" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0005012" } ] }, "type" : "CLASS", @@ -34438,10 +35287,6 @@ }, "type" : "CLASS", "lbl" : "multinucleate" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#consider", - "type" : "PROPERTY", - "lbl" : "consider" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001901", "meta" : { @@ -34451,12 +35296,19 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001900" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", "lbl" : "back" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#consider", + "type" : "PROPERTY", + "lbl" : "consider" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001902", "meta" : { @@ -34481,6 +35333,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001901" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -34753,6 +35608,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001926" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -34811,6 +35669,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001927" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -35507,6 +36368,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-07-05T03:18:03Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002383" } ] }, "type" : "CLASS", @@ -35542,6 +36406,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002382" } ] }, "type" : "CLASS", @@ -35894,6 +36761,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002394" } ] }, "type" : "CLASS", @@ -35938,6 +36808,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002393" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-11-15T05:33:05Z" @@ -36346,6 +37219,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Luke Slater" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0045093" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-12-22T14:16:43Z" @@ -36370,6 +37246,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Luke Slater" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0045094" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -36404,6 +37283,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0045091" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -36441,6 +37323,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Luke Slater" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0045092" } ] }, "type" : "CLASS", @@ -36983,6 +37868,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001494" } ] }, "type" : "CLASS", @@ -37080,6 +37968,9 @@ }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001493" } ] }, "type" : "CLASS", @@ -38027,6 +38918,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002354" } ] }, "type" : "CLASS", @@ -38171,6 +39065,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-31T04:52:04Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002355" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -38422,6 +39319,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-03-16T06:32:57Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002361" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -38579,6 +39479,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002362" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-03-16T06:31:57Z" }, { @@ -38640,6 +39543,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0025002" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -38713,50 +39619,53 @@ "type" : "CLASS", "lbl" : "obsolete consumption quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001035", + "id" : "http://purl.obolibrary.org/obo/PATO_0025002", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.", - "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration.", + "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "force amplitude", + "val" : "drinkable", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0025001" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2015-09-01T16:19:02Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "pbuttigieg" } ] }, "type" : "CLASS", - "lbl" : "force" + "lbl" : "potable" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0025002", + "id" : "http://purl.obolibrary.org/obo/PATO_0001035", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration.", - "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "drinkable", + "val" : "force amplitude", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2015-09-01T16:19:02Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "pbuttigieg" } ] }, "type" : "CLASS", - "lbl" : "potable" + "lbl" : "force" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000186", "meta" : { @@ -38824,6 +39733,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001154" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -39324,6 +40236,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001046" } ] }, "type" : "CLASS", @@ -39499,6 +40414,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002376" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -39533,6 +40451,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001043" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -39639,6 +40560,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-07-05T02:55:10Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002377" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -39976,6 +40900,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -40061,6 +40988,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-06-16T06:54:01Z" @@ -40082,6 +41012,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001456" } ] }, "type" : "CLASS", @@ -40094,6 +41027,9 @@ "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002304" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-06-16T06:50:59Z" }, { @@ -40130,6 +41066,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001455" } ] }, "type" : "CLASS", @@ -40142,6 +41081,9 @@ "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" }, { @@ -40251,6 +41193,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001460" } ] }, "type" : "CLASS", @@ -40361,6 +41306,9 @@ "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002301" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -40409,6 +41357,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-06-16T06:40:15Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002300" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -41028,6 +41979,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001459" } ] }, "type" : "CLASS", @@ -41594,6 +42548,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002328" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-23T12:06:38Z" }, { @@ -41753,6 +42710,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-23T12:06:54Z" @@ -41822,6 +42782,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001596" } ] }, "type" : "CLASS", @@ -41942,6 +42905,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001476" } ] }, "type" : "CLASS", @@ -41971,6 +42937,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-10-12T12:51:19Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002321" } ] }, "type" : "CLASS", @@ -41996,19 +42965,6 @@ }, "type" : "CLASS", "lbl" : "temporal distribution quality" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000142", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete substance" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001476", "meta" : { @@ -42023,12 +42979,28 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001475" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", "lbl" : "decreased position" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000142", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete substance" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002320", "meta" : { @@ -42144,6 +43116,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002322" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-10-12T12:50:59Z" @@ -42826,6 +43801,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002334" } ] }, "type" : "CLASS", @@ -42915,6 +43893,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002333" } ] }, "type" : "CLASS", @@ -42997,6 +43978,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002332" } ] }, "type" : "CLASS", @@ -43032,6 +44016,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001840" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002452" } ] }, "type" : "CLASS", @@ -43058,6 +44045,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-31T12:28:57Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002331" } ] }, "type" : "CLASS", @@ -43271,6 +44261,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001896" } ] }, "type" : "CLASS", @@ -43312,6 +44305,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001899" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -43344,6 +44340,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001412" } ] }, "type" : "CLASS", @@ -43372,6 +44371,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001897" } ] }, "type" : "CLASS", @@ -43405,6 +44407,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001411" } ] }, "type" : "CLASS", @@ -43423,6 +44428,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000570" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -43440,6 +44448,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001416" } ] }, "type" : "CLASS", @@ -43481,6 +44492,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001898" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -43534,6 +44548,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001417" } ] }, "type" : "CLASS", @@ -43569,6 +44586,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001892" } ] }, "type" : "CLASS", @@ -43683,6 +44703,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001893" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44031,6 +45054,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000569" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44134,6 +45160,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000573" } ] }, "type" : "CLASS", @@ -44164,6 +45193,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000574" } ] }, "type" : "CLASS", @@ -44318,6 +45350,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000586" } ] }, "type" : "CLASS", @@ -44417,6 +45452,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001202" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000587" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -44745,6 +45783,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000582" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44771,6 +45812,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000583" } ] }, "type" : "CLASS", @@ -44806,6 +45850,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000412" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000584" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -44842,6 +45889,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000585" } ] }, "type" : "CLASS", @@ -45099,6 +46149,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000600" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45264,6 +46317,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000591" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45298,6 +46354,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000592" } ] }, "type" : "CLASS", @@ -45391,6 +46450,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000595" } ] }, "type" : "CLASS", @@ -45464,6 +46526,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000596" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45654,6 +46719,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001860" } ] }, "type" : "CLASS", @@ -45812,6 +46880,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001355" } ] }, "type" : "CLASS", @@ -46111,6 +47182,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000389" } ] }, "type" : "CLASS", @@ -46270,6 +47344,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001859" } ] }, "type" : "CLASS", @@ -46288,6 +47365,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001959" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -46472,6 +47552,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000546" } ] }, "type" : "CLASS", @@ -46516,6 +47599,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000547" } ] }, "type" : "CLASS", @@ -46752,6 +47838,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001884" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -46823,6 +47912,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001885" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -46840,6 +47932,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001886" } ] }, "type" : "CLASS", @@ -46922,6 +48017,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001887" } ] }, "type" : "CLASS", @@ -47230,36 +48328,39 @@ "type" : "CLASS", "lbl" : "catalytic activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000969", + "id" : "http://purl.obolibrary.org/obo/PATO_0001817", "meta" : { "definition" : { - "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally small.", - "xrefs" : [ "Answers.com:Answers.com" ] + "val" : "A fatigability which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "dwarfed", + "val" : "low fatigability", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001816" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dwarf-like" + "lbl" : "decreased fatigability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001817", + "id" : "http://purl.obolibrary.org/obo/PATO_0000969", "meta" : { "definition" : { - "val" : "A fatigability which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally small.", + "xrefs" : [ "Answers.com:Answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low fatigability", + "val" : "dwarfed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -47268,7 +48369,7 @@ } ] }, "type" : "CLASS", - "lbl" : "decreased fatigability" + "lbl" : "dwarf-like" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001818", "meta" : { @@ -47278,6 +48379,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002026" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47326,6 +48430,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001817" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47415,6 +48522,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000964" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47482,6 +48592,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000963" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47703,6 +48816,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001825" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47768,6 +48884,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002112" } ] }, "type" : "CLASS", @@ -47835,6 +48954,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001823" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47863,6 +48985,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001826" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47908,6 +49033,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001824" } ] }, "type" : "CLASS", @@ -48037,6 +49165,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001838" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48098,6 +49229,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001839" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48131,6 +49265,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001830" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48146,6 +49283,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000982" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48166,6 +49306,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001833" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48186,6 +49329,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000983" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48216,6 +49362,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000984" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48231,6 +49380,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000985" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48251,6 +49403,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001831" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48301,6 +49456,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001834" } ] }, "type" : "CLASS", @@ -48382,6 +49540,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001832" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48397,6 +49558,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000504" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48432,6 +49596,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001835" } ] }, "type" : "CLASS", @@ -48458,6 +49625,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000505" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48727,6 +49897,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001844" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48920,6 +50093,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000516" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48940,6 +50116,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001843" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48960,6 +50139,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000513" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49592,9 +50774,15 @@ }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "'increase in temperature' is-opposite-of 'decrease in temperature'" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_class_level", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "is_opposite_of" @@ -49658,6 +50846,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000937" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49673,6 +50864,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000938" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49987,6 +51181,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001808" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -50072,6 +51269,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001807" } ] }, "type" : "CLASS", @@ -50227,6 +51427,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000955" } ] }, "type" : "CLASS", @@ -50242,6 +51445,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000956" } ] }, "type" : "CLASS", @@ -50567,6 +51773,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000911" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -50587,6 +51796,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000912" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -50762,6 +51974,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002220" } ] }, "type" : "CLASS", @@ -51505,6 +52720,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002271" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-10-26T02:00:20Z" @@ -51552,6 +52770,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002270" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-10-26T02:04:45Z" @@ -51599,6 +52820,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002286" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-03-10T09:07:57Z" @@ -51623,6 +52847,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002285" } ] }, "type" : "CLASS", @@ -51644,6 +52871,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002282" } ] }, "type" : "CLASS", @@ -51707,6 +52937,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-03-30T11:50:21Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002288" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -51731,6 +52964,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002287" } ] }, "type" : "CLASS", @@ -51805,6 +53041,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002283" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -51874,6 +53113,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002298" } ] }, "type" : "CLASS", @@ -51930,6 +53172,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002297" } ] }, "type" : "CLASS", @@ -52429,6 +53674,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002263" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -52622,6 +53870,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002222" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-07-09T01:51:52Z" @@ -52706,6 +53957,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-07-09T01:54:22Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002221" } ] }, "type" : "CLASS", @@ -53408,6 +54662,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002248" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-08-09T04:17:04Z" @@ -53468,6 +54725,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002249" } ] }, "type" : "CLASS", @@ -53691,6 +54951,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002246" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -53763,6 +55026,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002245" } ] }, "type" : "CLASS", @@ -54141,6 +55407,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-08-09T04:17:19Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002251" } ] }, "type" : "CLASS", @@ -54190,6 +55459,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002250" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-08-09T04:17:37Z" @@ -54465,18 +55737,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001247", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002332", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002331" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001381", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002017", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001280", "pred" : "is_a", @@ -54485,10 +55749,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001756", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001585" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002029", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002028" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098772", "pred" : "is_a", @@ -54497,22 +55757,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001053" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001700", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001699" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002038", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000639" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002441", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002442" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0042995", "pred" : "is_a", @@ -54581,10 +55829,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000937", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000938" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000328", "pred" : "is_a", @@ -54645,10 +55889,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002252", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001691", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001690" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002115", "pred" : "is_a", @@ -54673,14 +55913,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001629", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001729", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002178", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001729", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005004", "pred" : "is_a", @@ -54765,18 +56005,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002355", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002354" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000947", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002318" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002246", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002245" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001712", "pred" : "is_a", @@ -54793,26 +56025,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001862", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000274" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002028", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002029" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002026", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001818" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002339", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000454" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001975", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001206" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002332" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001515", "pred" : "is_a", @@ -54829,10 +56045,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001779", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001808", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001807" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045065", "pred" : "is_a", @@ -54893,10 +56105,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000409", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001460", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001459" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001921", "pred" : "is_a", @@ -54905,10 +56113,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002221", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002221" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043229", "pred" : "is_a", @@ -54921,10 +56125,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001593", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001592" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000599", "pred" : "is_a", @@ -54945,14 +56145,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000415", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001794" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001690", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001691" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000708", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000706" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002260", "pred" : "is_a", @@ -54961,10 +56153,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045087", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045000" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000938", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000937" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045091", "pred" : "is_a", @@ -54985,10 +56173,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001473", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000470" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001581", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001580" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001890", "pred" : "is_a", @@ -55009,14 +56193,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/CARO_0001010", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000040" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001769", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/CARO_0001010", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000040" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001457", "pred" : "is_a", @@ -55065,10 +56249,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002464", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002039", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002040" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001713", "pred" : "is_a", @@ -55105,18 +56285,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002179", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002322", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002321" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002189", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001632", "pred" : "is_a", @@ -55169,10 +56341,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001290" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000592" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001241", "pred" : "is_a", @@ -55185,10 +56353,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001400", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002249", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002248" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001549", "pred" : "is_a", @@ -55269,10 +56433,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000070", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0001555" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001790", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001788" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002250", "pred" : "is_a", @@ -55285,10 +56445,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002334", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002333" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001986", "pred" : "is_a", @@ -55305,10 +56461,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001475", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009967", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -55317,10 +56469,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0025002", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0025001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001863", "pred" : "is_a", @@ -55333,14 +56481,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001233", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001234" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001584", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001583" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002332", "pred" : "is_a", @@ -55357,10 +56497,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0030000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000646" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000600", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000599" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004035", "pred" : "subPropertyOf", @@ -55377,10 +56513,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001294", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001292" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001694" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001578", "pred" : "is_a", @@ -55425,10 +56557,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001393", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001374" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002139", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002247", "pred" : "is_a", @@ -55457,22 +56585,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001472", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002220", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002263" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001242" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002248", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002249" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000375" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001401", "pred" : "is_a", @@ -55481,18 +56597,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000911", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002442", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002441" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000386", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000387" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002333", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002334" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0033674", "pred" : "is_a", @@ -55501,26 +56605,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001620", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002018", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002017" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001248", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002321", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002322" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001380", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000955" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001380", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000066", "pred" : "is_a", @@ -55593,10 +56689,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002022", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000592", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000591" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098797", "pred" : "is_a", @@ -55617,14 +56709,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001825", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001825", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001054", "pred" : "is_a", @@ -55633,10 +56725,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001657", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015022", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015023" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001611", "pred" : "is_a", @@ -55689,10 +56777,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002538", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002005" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001229", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000328" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002258", "pred" : "inverseOf", @@ -55729,10 +56813,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002042", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001715" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001583", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001584" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", "pred" : "is_a", @@ -55785,14 +56865,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001514", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0048585", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0050896" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048584", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", "obj" : "http://purl.obolibrary.org/obo/GO_0050896" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048585", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0050896" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001767", "pred" : "is_a", @@ -55857,10 +56937,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001542", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001817", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001816" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001171", "pred" : "is_a", @@ -55885,22 +56961,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001599", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002376", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001318", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000189" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001927" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002452", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001485" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", "pred" : "is_a", @@ -55985,10 +57049,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0055001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002001", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002002" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002362", "pred" : "is_a", @@ -56001,10 +57061,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000169", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045093", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045091" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002002", "pred" : "is_a", @@ -56041,18 +57097,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001964", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002507", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000998", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000992" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001493", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001494" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002507", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0025001", "pred" : "is_a", @@ -56065,10 +57117,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0048585", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048583" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000470", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001997" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002338", "pred" : "is_a", @@ -56077,10 +57125,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002478", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001410" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045092", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045094" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000083", "pred" : "is_a", @@ -56161,14 +57205,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002367", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000384" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", "pred" : "is_a", @@ -56201,10 +57245,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045082", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001818", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002026" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001806", "pred" : "is_a", @@ -56225,10 +57265,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001655", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001817" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000596", "pred" : "is_a", @@ -56253,10 +57289,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001607", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001846" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002472", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002471" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001645", "pred" : "is_a", @@ -56269,10 +57301,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001390", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001389" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001701", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001501" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001764", "pred" : "is_a", @@ -56282,17 +57310,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001721" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001707", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001706" + "sub" : "http://purl.obolibrary.org/obo/GO_0009968", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010648" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001788", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009968", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0010648" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001823", "pred" : "is_a", @@ -56321,10 +57345,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0023051", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0050789" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002364", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001154" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001965", "pred" : "is_a", @@ -56337,34 +57357,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002351", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002145", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002144" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002140", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002138" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045091", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045093" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002541", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001152" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001431" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002460", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001431" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000261", "pred" : "is_a", @@ -56373,10 +57381,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002482", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000438", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001227" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000336", "pred" : "is_a", @@ -56445,10 +57449,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009893", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048518" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001901", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001900" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002481", "pred" : "subPropertyOf", @@ -56489,14 +57489,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0025000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001807", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001808" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002148", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002147" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001359", "pred" : "is_a", @@ -56509,10 +57501,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000625" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002354", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002355" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045044", "pred" : "is_a", @@ -56533,10 +57521,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000381", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000380" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002300", "pred" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", @@ -56593,10 +57577,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001499", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002221", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005488", "pred" : "is_a", @@ -56605,10 +57585,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000911", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000912" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001808", "pred" : "is_a", @@ -56621,10 +57597,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002286", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002384" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002246" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001595", "pred" : "is_a", @@ -56677,14 +57649,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002428", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002263" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001472", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001596" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001592", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001593" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015014", "pred" : "is_a", @@ -56697,10 +57661,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002483", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001580", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001581" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001962", "pred" : "is_a", @@ -56769,14 +57729,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001244", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000380", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000381" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001168", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001167" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000945", "pred" : "is_a", @@ -56805,14 +57757,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002269", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002377", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002376" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001927", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001926" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045031", "pred" : "is_a", @@ -56853,14 +57797,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001615", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", "pred" : "is_a", @@ -56885,14 +57829,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000964", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000957" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002091", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001627", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001626" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002091", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001594", "pred" : "is_a", @@ -56926,21 +57870,13 @@ "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002334" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001699", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001700" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045094", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045092" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0055002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", "pred" : "is_a", @@ -56977,14 +57913,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001762", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000279" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001959", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001861" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002147", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002148" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001888", "pred" : "is_a", @@ -57005,58 +57933,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001626", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002002", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002001" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0016301", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001206", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001975" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001963", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001903", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001963", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051348", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051338" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001494", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001493" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000911" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002148", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001154", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002364" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000082", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001167", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001168" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000708" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005013", "pred" : "is_a", @@ -57085,10 +57985,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000070", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000068" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001227", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000438" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000440", "pred" : "is_a", @@ -57137,14 +58033,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001243", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002026", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001243", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002228", "pred" : "is_a", @@ -57173,10 +58069,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002050", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0001905" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000599", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000600" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002186", "pred" : "is_a", @@ -57185,10 +58077,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000300", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001046", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001043" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001269", "pred" : "is_a", @@ -57205,22 +58093,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000625", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000370", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000365" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001324", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000619", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000633" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000608", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000610" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045006", "pred" : "is_a", @@ -57241,14 +58117,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002151", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001785" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002018", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002016" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002201", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002018", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002016" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002326", "pred" : "is_a", @@ -57269,10 +58145,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005622", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005575" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001958", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001957" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002139", "pred" : "is_a", @@ -57301,10 +58173,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0019220", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051174" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001618" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", "pred" : "is_a", @@ -57345,10 +58213,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002157", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001852" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002251", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002250" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000927", "pred" : "is_a", @@ -57373,10 +58237,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001026", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002287", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002288" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000119", "pred" : "is_a", @@ -57385,10 +58245,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000614", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000613" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002014", "pred" : "subPropertyOf", @@ -57397,10 +58253,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002058" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001389", "pred" : "is_a", @@ -57413,10 +58265,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0031325", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009893" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002069", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002068" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001375", "pred" : "is_a", @@ -57437,14 +58285,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002400", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001409" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002418", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002427" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0042326", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0016310" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002418", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002427" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000600", "pred" : "is_a", @@ -57465,10 +58313,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004047", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002418" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000505", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000504" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002322", "pred" : "is_a", @@ -57477,10 +58321,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001398", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002102" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001162", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001163" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001341", "pred" : "is_a", @@ -57493,10 +58333,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009892", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0019222" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002250", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002251" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001462", "pred" : "is_a", @@ -57533,10 +58369,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001960", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001825", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001826" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002220", "pred" : "is_a", @@ -57613,22 +58445,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002335", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001619" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005575" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001715", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001714" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002383", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002382" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", "pred" : "is_a", @@ -57649,10 +58469,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000150", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001859", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001860" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000614", "pred" : "is_a", @@ -57661,10 +58477,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000700", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000701" }, { "sub" : "http://purl.obolibrary.org/obo/CL_0000000", "pred" : "is_a", @@ -57693,14 +58505,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002015", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002336" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002056", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002055" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002286", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002285" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001376", "pred" : "is_a", @@ -57717,14 +58521,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000631", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002068", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002069" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002298", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002297" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005018", "pred" : "is_a", @@ -57741,10 +58537,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045041", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000300", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001378", "pred" : "is_a", @@ -57813,10 +58605,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001546", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002198" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002382", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002383" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001586", "pred" : "is_a", @@ -57853,10 +58641,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002074", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001824", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001406", "pred" : "is_a", @@ -57869,10 +58653,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001796", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001958" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001946", "pred" : "is_a", @@ -57889,10 +58669,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001704", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001424" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001839", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001838" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002465", "pred" : "is_a", @@ -57933,30 +58709,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001934", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001961", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001934", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0050794" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002495", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002494" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002362", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002361" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045004", "pred" : "is_a", @@ -57969,10 +58737,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001242", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002469", "pred" : "is_a", @@ -58001,10 +58765,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005929", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/GO_0030990" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002471", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002472" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030005", "pred" : "is_a", @@ -58037,10 +58797,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002349", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002144", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002145" }, { "sub" : "http://purl.obolibrary.org/obo/pato#has_divisor_quality", "pred" : "subPropertyOf", @@ -58053,14 +58809,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005017", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000955", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000956" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000701", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000700" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000546", "pred" : "is_a", @@ -58125,18 +58873,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002405", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002412" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001043", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001046" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001989", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001591" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001152", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001153" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002595", "pred" : "subPropertyOf", @@ -58145,10 +58885,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002404", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000328", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001229" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000937", "pred" : "is_a", @@ -58253,18 +58989,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001984", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0040005", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001900", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001901" + "sub" : "http://purl.obolibrary.org/obo/PATO_0040005", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048018", "pred" : "is_a", @@ -58286,17 +59018,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002027" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001825" + "sub" : "http://purl.obolibrary.org/obo/PATO_0040014", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045009", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0040014", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002150", "pred" : "is_a", @@ -58325,14 +59053,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002352", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001838", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001839" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000389", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001863" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001868", "pred" : "is_a", @@ -58358,25 +59078,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002494", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002495" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001863", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000389" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002361", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002362" + "sub" : "http://purl.obolibrary.org/obo/GO_0010563", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0031324" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002181", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0010563", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0031324" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000464", "pred" : "is_a", @@ -58441,14 +59149,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002258", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002058", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002288", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002287" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001870", "pred" : "is_a", @@ -58469,10 +59169,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002385", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002384" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000956", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000955" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002023", "pred" : "subPropertyOf", @@ -58533,10 +59229,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001486", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001163", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001162" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001827", "pred" : "is_a", @@ -58661,10 +59353,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001638" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040006", "pred" : "is_a", @@ -58697,14 +59385,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045067", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002271", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002270" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000665", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000327" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002009", "pred" : "is_a", @@ -58721,18 +59401,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005515", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005488" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000513", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000516" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0050790" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002282" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001178", "pred" : "is_a", @@ -58753,14 +59425,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000689", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002087", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002090" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001200", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001890" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002087", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002090" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043393", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -58769,10 +59441,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000410", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000985", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000984" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043549", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -58809,10 +59477,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002375", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000428", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000427" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002024", "pred" : "subPropertyOf", @@ -58825,10 +59489,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001397", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001194", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001192" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001494", "pred" : "is_a", @@ -58837,10 +59497,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045080", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002146" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002271" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045060", "pred" : "is_a", @@ -58849,10 +59505,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002242", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002282", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002283" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001581", "pred" : "is_a", @@ -58881,10 +59533,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005886", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0016020" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001603", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001604" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040001", "pred" : "is_a", @@ -58893,10 +59541,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001627", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001628" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002256", "pred" : "is_a", @@ -58905,22 +59549,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002394", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000515" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001930", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001931" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002396", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001723" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001615", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001614" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0033674", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -58953,10 +59585,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001035" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001833", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001832" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001637", "pred" : "is_a", @@ -58965,10 +59593,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002285", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001712", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001713" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001942", "pred" : "is_a", @@ -58977,14 +59601,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001601", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045029", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048584", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048518" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045029", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001021", "pred" : "is_a", @@ -59061,10 +59685,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000078", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002323" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002052", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001710", "pred" : "is_a", @@ -59081,14 +59701,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000308", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000309" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001192", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001194" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002254", "pred" : "subPropertyOf", @@ -59097,10 +59709,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000274", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001434" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000404", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000415" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015025", "pred" : "is_a", @@ -59157,10 +59765,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001385" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000888", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000892" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002333", "pred" : "is_a", @@ -59173,18 +59777,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009966", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0025001", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0025002" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002051", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001614", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001615" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001472", "pred" : "is_a", @@ -59193,10 +59785,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0020000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000047" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001832", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001833" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048518", "pred" : "is_a", @@ -59217,10 +59805,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001639" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001759", "pred" : "is_a", @@ -59233,10 +59817,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000303", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002040", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002039" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002246", "pred" : "is_a", @@ -59261,14 +59841,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001844", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001843" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001723", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001724" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002105", "pred" : "is_a", @@ -59301,18 +59873,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000760", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001726", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001725" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001815" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002394", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002393" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002088", "pred" : "is_a", @@ -59345,10 +59909,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000516" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001171", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001172" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001360", "pred" : "is_a", @@ -59361,14 +59921,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000609", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000610" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002285", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002286" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001997", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000470" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", @@ -59381,14 +59933,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001260", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000951" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002043", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002042" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002297", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002298" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098590", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -59401,14 +59945,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001621", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000963", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000964" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002055", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002056" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002013", "pred" : "subPropertyOf", @@ -59421,14 +59957,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000639", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002038" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001749", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005006", "pred" : "is_a", @@ -59449,10 +59977,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001289", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001287" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000757", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000758" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001922", "pred" : "is_a", @@ -59469,14 +59993,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000642", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002014", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002013" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002629", "pred" : "subPropertyOf", @@ -59501,22 +60025,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000309", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000308" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001172", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001171" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000643", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001598" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002393", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002394" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002050", "pred" : "is_a", @@ -59545,10 +60057,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002100", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001714", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001715" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045026", "pred" : "is_a", @@ -59557,14 +60065,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001873", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002132", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000946", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002132", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051100", "pred" : "is_a", @@ -59589,10 +60097,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001605", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001835", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001834" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001468", "pred" : "is_a", @@ -59613,10 +60117,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001768", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002140", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002139" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001482", "pred" : "is_a", @@ -59629,14 +60129,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002104", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001823", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001824" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000299", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000300" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002380", "pred" : "is_a", @@ -59665,10 +60157,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000152" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001355", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001851", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -59685,14 +60173,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001914", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001912" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001628", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001627" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002526", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002491" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000308", "pred" : "is_a", @@ -59717,22 +60197,18 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0098796", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0016020" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002042", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002043" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001923", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001923", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002212", "pred" : "subPropertyOf", @@ -59741,14 +60217,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005102", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005515" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001043" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043227", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043226" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001043" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001206", "pred" : "is_a", @@ -59769,10 +60245,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002340", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002339" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000964", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000963" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002240", "pred" : "is_a", @@ -59785,10 +60257,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001288", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001287" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000613", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001201", "pred" : "is_a", @@ -59797,10 +60265,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000504", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000505" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900121", "pred" : "is_a", @@ -59809,18 +60273,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001168", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001020" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000516", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000513" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000423", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000056" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000758", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000757" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002450", "pred" : "is_a", @@ -59841,10 +60297,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002015", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002013" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002263", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002131", "pred" : "is_a", @@ -59869,14 +60321,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001580", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001690" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000769", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000770" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001725", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001726" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002414", "pred" : "is_a", @@ -59885,10 +60329,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001715", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000574" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001713", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001712" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002164", "pred" : "is_a", @@ -59905,10 +60345,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001604", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001603" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002031", "pred" : "is_a", @@ -59937,10 +60373,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002453", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001835" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002172", "pred" : "is_a", @@ -59953,22 +60385,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002299", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002078" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002101", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002306", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002101", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002262", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001931", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001930" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000037", "pred" : "is_a", @@ -60017,10 +60445,6 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000066", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000067" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001307" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", "pred" : "is_a", @@ -60037,10 +60461,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002282", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002504", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002527" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0044237", "pred" : "is_a", @@ -60065,10 +60485,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001549", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001550" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001349", "pred" : "is_a", @@ -60109,10 +60525,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002223", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000303", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001688", "pred" : "is_a", @@ -60189,10 +60601,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001739", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000689", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000690" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001543", "pred" : "is_a", @@ -60221,10 +60629,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001664", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002072", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002071" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002566", "pred" : "subPropertyOf", @@ -60249,18 +60653,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001950", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000944" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001417", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001416" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001538", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045058", "pred" : "is_a", @@ -60325,10 +60721,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015002" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001635", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001636" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009893", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -60349,10 +60741,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045028", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000891" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000633", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000619" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000584", "pred" : "is_a", @@ -60393,18 +60781,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000048" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000982", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000983" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002023", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002630" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001319", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001318" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0030000", "pred" : "is_a", @@ -60413,22 +60793,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002385", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001410" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000546", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000547" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002343", "pred" : "is_a", @@ -60441,10 +60817,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002392", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000304", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002198", "pred" : "is_a", @@ -60461,10 +60833,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002598", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002596" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001669", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001670" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", @@ -60485,10 +60853,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002098", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000642", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000651" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002305", "pred" : "is_a", @@ -60509,10 +60873,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002314", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002502" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000414", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002272", "pred" : "is_a", @@ -60525,14 +60885,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001315", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001653", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001652" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001333", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002324" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001653", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001652" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001312", "pred" : "is_a", @@ -60585,10 +60945,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001575", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002071", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002072" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001838", "pred" : "is_a", @@ -60597,10 +60953,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002046", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002192", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002191" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001191", "pred" : "is_a", @@ -60641,10 +60993,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001988", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001416", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001417" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040025", "pred" : "is_a", @@ -60653,10 +61001,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000119" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001538" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001369", "pred" : "is_a", @@ -60665,10 +61009,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001695", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001779", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001778" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001987", "pred" : "is_a", @@ -60681,14 +61021,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002024", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002629" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000569", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000570" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001307", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001308" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0000000", "pred" : "is_a", @@ -60713,14 +61045,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001622", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001621" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001743", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001742" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002239", "pred" : "is_a", @@ -60777,10 +61101,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002425", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000644", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000645" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000582", "pred" : "is_a", @@ -60793,10 +61113,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002331", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002217" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002196", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002195" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001488", "pred" : "is_a", @@ -60813,14 +61129,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002333", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002075", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002074" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000983", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000982" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000570", "pred" : "is_a", @@ -60841,10 +61149,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002438", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000547", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000546" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001348", "pred" : "is_a", @@ -60869,10 +61173,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001444", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001442" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000415", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098796", "pred" : "is_a", @@ -60881,14 +61181,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002294", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002060", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001293" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001323" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002060", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001293" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045042", "pred" : "is_a", @@ -60905,14 +61205,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0000052", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000053" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001311", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001310" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001553", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001551" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001311", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001310" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045043", "pred" : "is_a", @@ -60965,30 +61265,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001566" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002074", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002075" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002195", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002196" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001831", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001830" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045048", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001843", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001844" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001613", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001612" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045056", "pred" : "is_a", @@ -61001,10 +61281,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0031325", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0031323" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001625", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001624" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001461", "pred" : "is_a", @@ -61037,10 +61313,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000039", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0005013", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0005012" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001835", "pred" : "is_a", @@ -61113,10 +61385,6 @@ "sub" : "http://purl.obolibrary.org/obo/CARO_0000014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/CARO_0000003" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000610", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000608" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004032", "pred" : "subPropertyOf", @@ -61145,14 +61413,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002230", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000402", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000414" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000984", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000985" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002096", "pred" : "is_a", @@ -61233,10 +61493,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002315", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000427", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", "pred" : "is_a", @@ -61245,10 +61501,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045035", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001655" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000644" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001445", "pred" : "is_a", @@ -61325,14 +61577,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001333", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045013", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001229", "pred" : "is_a", @@ -61389,30 +61641,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000375", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000040" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001636", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001635" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045054" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045049", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001193", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045049", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001258", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000954" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001830", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001831" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045023", "pred" : "is_a", @@ -61421,10 +61665,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002352", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001729" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001613" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", "pred" : "is_a", @@ -61433,10 +61673,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0043226", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0110165" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001624", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001625" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", "pred" : "is_a", @@ -61453,10 +61689,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001879", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0005012", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0005013" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000405", "pred" : "is_a", @@ -61477,14 +61709,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000165" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001875", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001861", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002013" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001875", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0010646", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -61513,14 +61745,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000639" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002001", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001999" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002024", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002001", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001999" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002445", "pred" : "is_a", @@ -61533,10 +61765,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001832", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000651", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000642" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002041", "pred" : "is_a", @@ -61629,10 +61857,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000370", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001510", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001511" }, { "sub" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "pred" : "subPropertyOf", @@ -61677,10 +61901,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001409", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001897", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001896" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045054", "pred" : "is_a", @@ -61713,10 +61933,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001352", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001019" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001887" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002357", "pred" : "is_a", @@ -61729,18 +61945,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002461", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002165" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001764", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001765" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002051", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001777" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002533", "pred" : "is_a", @@ -61761,10 +61969,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000017", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000892", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000888" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045042", "pred" : "is_a", @@ -61801,14 +62005,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0048522", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0050794" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000021", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002052", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000021", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001876", "pred" : "is_a", @@ -61817,10 +62021,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001459", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001460" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001813", "pred" : "is_a", @@ -61873,10 +62073,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002040", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001355" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000760", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000761" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000395", "pred" : "is_a", @@ -61897,14 +62093,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001598" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002313", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002424", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002313", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000622", "pred" : "is_a", @@ -61917,10 +62113,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002437", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002527", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002504" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002076", "pred" : "is_a", @@ -61957,14 +62149,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002063", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001685", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001682" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015009" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001685", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001682" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001227", "pred" : "is_a", @@ -62001,10 +62193,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001347", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001335" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001859" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001192", "pred" : "is_a", @@ -62061,30 +62249,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045045", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001741" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001749" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001951", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001886" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000336", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000331" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001278", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000953" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000938", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002264" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001278", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000953" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002336", "pred" : "subPropertyOf", @@ -62101,10 +62277,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001562", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000125" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001678", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001677" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001671", "pred" : "is_a", @@ -62121,10 +62293,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015021" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001896", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001897" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002217", "pred" : "inverseOf", @@ -62165,10 +62333,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001654", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001653" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", "pred" : "is_a", @@ -62181,22 +62345,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001545", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001412", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001763", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001760" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040026", "pred" : "is_a", @@ -62213,14 +62365,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001890", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002075", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000633", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002075", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001843", "pred" : "is_a", @@ -62305,14 +62457,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002167", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001646" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002327", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002456", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002327", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000499", "pred" : "is_a", @@ -62341,10 +62493,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002336", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000760" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002039", "pred" : "is_a", @@ -62353,10 +62501,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001377", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001393" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000422", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000423" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002447", "pred" : "subPropertyOf", @@ -62369,14 +62513,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002077", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001476", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045076", "pred" : "is_a", @@ -62433,10 +62577,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002191", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002192" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", @@ -62485,18 +62625,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040017", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001433" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001561", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001564" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001657", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001656" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001519", "pred" : "is_a", @@ -62533,14 +62665,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040022", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001318", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001319" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001621", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001622" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", @@ -62549,10 +62673,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002202", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002201" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001743" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", "pred" : "is_a", @@ -62569,14 +62689,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001779" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001887", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001885" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001899", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001898" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0023052", "pred" : "is_a", @@ -62589,10 +62701,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002241", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001979" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001362", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001716" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001604", "pred" : "is_a", @@ -62601,10 +62709,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002218", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001779" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002431", "pred" : "is_a", @@ -62621,22 +62725,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001470", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002000", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001999" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002000", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001999" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002422", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001788", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001790" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002213", "pred" : "inverseOf", @@ -62709,10 +62809,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002435", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000423", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000422" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002389", "pred" : "is_a", @@ -62749,10 +62845,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001477", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002491", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002526" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0031324", "pred" : "is_a", @@ -62813,18 +62905,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045045", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000688", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000695" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002432", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001821", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002112" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001548", "pred" : "is_a", @@ -62885,10 +62969,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001776" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001450", "pred" : "is_a", @@ -62897,10 +62977,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045089", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045088" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001898", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001899" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0000006", "pred" : "is_a", @@ -62961,10 +63037,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001305", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001306" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001919", "pred" : "is_a", @@ -62973,10 +63045,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002086", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002222" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001657" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", @@ -62993,18 +63061,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002324", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002323" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_1900121", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_1900120" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002253", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000407" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001886", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" + "sub" : "http://purl.obolibrary.org/obo/GO_1900121", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_1900120" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045065", "pred" : "is_a", @@ -63017,14 +63081,6 @@ "sub" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001511", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001510" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001765", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001764" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000763", "pred" : "is_a", @@ -63033,22 +63089,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045077", "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045084", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045071", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045084", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001699", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000062" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000695", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000688" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000320", "pred" : "is_a", @@ -63065,10 +63117,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001314" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002304", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001412", "pred" : "is_a", @@ -63081,14 +63129,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001665", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000331", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000336" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000574" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001652", "pred" : "is_a", @@ -63137,10 +63177,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0065009", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0003674" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000487" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0032991", "pred" : "is_a", @@ -63149,18 +63185,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001189", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015003", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015004" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002144", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002327" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002481", "pred" : "is_a", @@ -63173,14 +63201,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002412", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000464", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000463" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000585", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000584" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", "pred" : "is_a", @@ -63197,10 +63217,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001975", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001976" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015015", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002504", "pred" : "is_a", @@ -63277,34 +63293,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045068", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001663", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001664" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001783", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001651", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001650" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001676" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002411", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002418" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001782", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000049" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001770", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001782", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000049" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0007165", "pred" : "is_a", @@ -63317,10 +63321,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002183", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001892" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002468", "pred" : "is_a", @@ -63349,10 +63349,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001760", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001763" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002539", "pred" : "is_a", @@ -63409,10 +63405,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000117" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001553" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900122", "pred" : "is_a", @@ -63429,38 +63421,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001796", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001795" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001566", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001567" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001716", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001362" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000502" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001578", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001577" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001276", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000321" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001312", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001311" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002303", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000460", "pred" : "is_a", @@ -63469,10 +63437,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001423", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001372" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015028", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015027" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045078", "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", @@ -63481,10 +63445,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0031323", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0044237" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000344", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000345" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001787", "pred" : "is_a", @@ -63493,10 +63453,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000982", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000970" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000586", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000955", "pred" : "is_a", @@ -63526,17 +63482,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001746", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001758", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001744" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001757" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001748", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001758", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001746", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001757" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001744" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002632", "pred" : "is_a", @@ -63557,10 +63513,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001504", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001502" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000573" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001579", "pred" : "is_a", @@ -63573,14 +63525,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001417", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015003" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002327", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001807", "pred" : "is_a", @@ -63625,10 +63569,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001533", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000019" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001650", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001651" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001651", "pred" : "is_a", @@ -63637,10 +63577,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002134", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001311", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001312" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000056", "pred" : "is_a", @@ -63673,22 +63609,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001927", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001795", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002496", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001783", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001782" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001553", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001554" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001901", "pred" : "is_a", @@ -63721,10 +63645,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002518", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001892", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001893" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0030545", "pred" : "is_a", @@ -63801,22 +63721,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000701", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1902531", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009966" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001686", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001685" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", "pred" : "is_a", @@ -63825,10 +63741,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001577", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001578" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001275", "pred" : "is_a", @@ -63837,22 +63749,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001698", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001697" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002268", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002099", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002100" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001456", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001455" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000125", "pred" : "is_a", @@ -63873,10 +63773,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015026", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000890", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000891" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002630", "pred" : "is_a", @@ -63909,10 +63805,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001482", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000440", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002284", "pred" : "is_a", @@ -63953,10 +63845,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001199", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000587", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001525", "pred" : "is_a", @@ -63965,14 +63853,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001717", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001674", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002022", "pred" : "inverseOf", @@ -64053,10 +63941,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002235", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000345", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000344" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002214", "pred" : "is_a", @@ -64081,14 +63965,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002106", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002054", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002078", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002054", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002403", "pred" : "is_a", @@ -64101,10 +63985,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001954", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001199" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001411", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001412" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001856", "pred" : "is_a", @@ -64125,10 +64005,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002399", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001653", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001654" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002387", "pred" : "is_a", @@ -64169,14 +64045,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005929", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0120025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001744", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001739" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000077" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001744", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001739" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000330", "pred" : "is_a", @@ -64189,18 +64065,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000588", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002100", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000967", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001689", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001688" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001052", "pred" : "is_a", @@ -64257,30 +64125,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_1902532", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009968" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001762", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001761" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001677", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001161", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001544", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001545" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001314", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001313" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005024", "pred" : "is_a", @@ -64329,10 +64181,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000984", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000973" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002305", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0032092", "pred" : "is_a", @@ -64349,10 +64197,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001307", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001314" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000891", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000890" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001512", "pred" : "is_a", @@ -64373,10 +64217,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001538", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001861", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001959" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001429", "pred" : "is_a", @@ -64409,22 +64249,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001474", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000327", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000665" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040021", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001576", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002503", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001576", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001405", "pred" : "is_a", @@ -64441,10 +64277,6 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000467", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000462" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002411", "pred" : "is_a", @@ -64501,10 +64333,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001782", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001501", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001701" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045067", "pred" : "is_a", @@ -64521,10 +64349,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001761", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001762" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001892", "pred" : "is_a", @@ -64633,10 +64457,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000770", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000769" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002254", "pred" : "is_a", @@ -64665,14 +64485,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001264", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000403", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045086", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000403", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000321", "pred" : "is_a", @@ -64681,26 +64501,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045084" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001664", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001663" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001688", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001689" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001676", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001675" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001313", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001314" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001567", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001566" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001566", "pred" : "is_a", @@ -64713,10 +64513,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002353", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000460", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098772", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -64753,10 +64549,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000505", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000375", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000374" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", @@ -64817,10 +64609,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045063", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015011", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015010" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002521", "pred" : "is_a", @@ -64849,10 +64637,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001719", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015023", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015022" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002231", "pred" : "is_a", @@ -64890,29 +64674,25 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001547" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000387", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000386" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001874", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002405", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001874", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001290", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002534", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001753", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002534", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001535", "pred" : "is_a", @@ -64921,10 +64701,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002123", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002300", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001432", "pred" : "is_a", @@ -64941,10 +64717,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001578", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001549" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045050", "pred" : "is_a", @@ -64957,10 +64729,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001698", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001683", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001684" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002428", "pred" : "is_a", @@ -64969,14 +64737,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002191", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002190" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001695", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001696" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001562", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001563" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048522", "pred" : "is_a", @@ -65013,10 +64773,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0003824", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0003674" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015010", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002165", "pred" : "is_a", @@ -65029,10 +64785,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002108", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000623" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001671", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001672" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045023", "pred" : "is_a", @@ -65061,10 +64813,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002036", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000690", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000689" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045005", "pred" : "is_a", @@ -65121,14 +64869,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002480", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001448" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000330", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000440" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000582", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000583" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000365", "pred" : "is_a", @@ -65173,26 +64913,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001296", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002008", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001454", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000085" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000461", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000460" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002501", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000632", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002501", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002405", "pred" : "subPropertyOf", @@ -65285,10 +65017,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001524", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001520" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001857", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001355" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002513", "pred" : "is_a", @@ -65313,10 +65041,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001741" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001670", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001669" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001621", "pred" : "is_a", @@ -65333,14 +65057,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001887", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001886" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001754", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002535", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001754", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002090", "pred" : "subPropertyOf", @@ -65373,10 +65097,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001693" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", "pred" : "is_a", @@ -65389,10 +65109,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0048523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048519" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001485", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002452" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002143", "pred" : "is_a", @@ -65465,10 +65181,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002037", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000570", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000569" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001970", "pred" : "is_a", @@ -65485,10 +65197,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002041" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001596", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001472" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045024", "pred" : "is_a", @@ -65497,18 +65205,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009966" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001476", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002428", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002431" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001234", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001233" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001195", "pred" : "is_a", @@ -65533,10 +65233,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0120025", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/GO_0098590" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", "pred" : "is_a", @@ -65545,10 +65241,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000915" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000498", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000499" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000331", "pred" : "is_a", @@ -65573,10 +65265,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001905", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0002050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000583", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000582" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002515", "pred" : "is_a", @@ -65589,10 +65277,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002524", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000595", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000596" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0007165", "pred" : "is_a", @@ -65673,18 +65357,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001316", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002302", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001654", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001652" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015025", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015024" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002168", "pred" : "is_a", @@ -65701,22 +65377,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002254", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002255" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001782", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001783" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001459" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001685", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001686" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001455", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001456" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900122", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -65729,10 +65393,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0050896", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0008150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001552", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001551" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040020", "pred" : "is_a", @@ -65741,10 +65401,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002417", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001697", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001698" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", "pred" : "is_a", @@ -65765,14 +65421,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001321", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001321", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", @@ -65861,10 +65517,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0023057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001576", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001575" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001510", "pred" : "is_a", @@ -65893,14 +65545,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002290" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001588", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001587" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002301", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045090", "pred" : "is_a", @@ -65925,26 +65569,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000957", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000487", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000488" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005634", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043231" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000463", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000464" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002520", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000584", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000585" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000586", "pred" : "is_a", @@ -65953,14 +65585,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000499", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000498" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015014", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015015" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002224", "pred" : "is_a", @@ -65969,10 +65593,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001328", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001325" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000365", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000370" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030003", "pred" : "is_a", @@ -65985,10 +65605,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002630", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002578" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000596", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000595" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001889", "pred" : "is_a", @@ -65997,14 +65613,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001194", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002261", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002155", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002261", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001793", "pred" : "is_a", @@ -66017,14 +65633,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001317", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002070", "pred" : "is_a", @@ -66069,14 +65685,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001697", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001551", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001552" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001671" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002156", "pred" : "is_a", @@ -66089,18 +65697,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001322", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001587", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001588" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001563", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001562" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001684", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001683" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001577", "pred" : "is_a", @@ -66109,10 +65705,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001852", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002181" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001575", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001576" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002035", "pred" : "is_a", @@ -66137,10 +65729,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001680", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000918" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002112", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001821" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001801", "pred" : "is_a", @@ -66169,10 +65757,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001511", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001696", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001695" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000367", "pred" : "is_a", @@ -66248,17 +65832,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002221", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002220" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000569", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000119" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", + "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000569", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000119" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002221", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002220" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", + "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { @@ -66668,17 +66252,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0005488" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048518", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048519", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048519", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048518", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" } ] }, { @@ -66752,17 +66336,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0003674" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] }, { @@ -67866,17 +67450,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051347", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051348", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0016740" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051348", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051347", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0016740" } ] }, { @@ -68181,15 +67765,15 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001551", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001457" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001778", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001230" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001778", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001230" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001551", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001457" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" @@ -68496,17 +68080,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001664", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001537" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045051", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001323" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", + "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045051", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001323" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001664", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001537" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", + "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { @@ -68825,14 +68409,6 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000050", "allValuesFromEdges" : [ { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" - }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" @@ -68840,10 +68416,18 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" } ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002506", diff --git a/pato-full.obo b/pato-full.obo index 0f699170..a6f4a420 100644 --- a/pato-full.obo +++ b/pato-full.obo @@ -24608,6 +24608,8 @@ def: "x is the opposite of y if there exists some distance metric M, and there e xref: RO:0002604 property_value: IAO:0000112 "'anterior end of organism' is-opposite-of 'posterior end of organism'" xsd:string property_value: IAO:0000112 "'increase in temperature' is-opposite-of 'decrease in temperature'" xsd:string +is_metadata_tag: true +is_class_level: true [Typedef] id: is_unit_of diff --git a/pato-full.owl b/pato-full.owl index 1f222872..651fd636 100644 --- a/pato-full.owl +++ b/pato-full.owl @@ -204,7 +204,19 @@ - + + 'anterior end of organism' is-opposite-of 'posterior end of organism' + 'increase in temperature' is-opposite-of 'decrease in temperature' + x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). + RO:0002604 + quality + is_opposite_of + true + true + is_opposite_of + is opposite of + is_opposite_of + @@ -2354,12 +2366,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different - - - - - - @@ -11545,14 +11551,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely. + quality PATO:0000299 @@ -11572,13 +11573,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely. + quality fixed PATO:0000300 @@ -11633,13 +11629,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A speed which is relatively high. + high speed quality fast speed @@ -11672,13 +11663,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A speed which is relatively low. + slow slow speed quality @@ -11732,13 +11718,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An age which is relatively high. + quality PATO:0000308 @@ -11757,13 +11738,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An age which is relatively low. + quality PATO:0000309 @@ -12041,13 +12017,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color brightness which is relatively low. + dark quality PATO:0000327 @@ -12067,13 +12038,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color saturation which is of low purity. + pale quality dull @@ -12114,13 +12080,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency. + quality PATO:0000330 @@ -12141,13 +12102,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color. + quality PATO:0000331 @@ -12217,13 +12173,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color quality inhering in a bearer by virtue of the bearer's having color. + PATO:0000332 quality pigmented @@ -12331,14 +12282,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A compatibility quality inhering in a bearer by virtue of the bearer's being capable of harmonious coexistence. + quality PATO:0000344 @@ -12359,13 +12305,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A compatibility quality inhering in a bearer by virtue of the bearer's being incapable of harmonious coexistence. + quality PATO:0000345 @@ -12595,13 +12536,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point. + quality PATO:0000365 @@ -12680,13 +12616,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point. + quality PATO:0000370 @@ -12750,13 +12681,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A distance which is greater relative to the normal or average. + quality long distance PATO:0000374 @@ -12789,13 +12715,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A distance which is lesser relative to the normal or average. + quality short distance PATO:0000375 @@ -12872,13 +12793,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A frequency which is relatively high. + high frequency quality frequent @@ -12912,13 +12828,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A frequency which is relatively low. + low frequency quality infrequent @@ -13014,13 +12925,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A hardness quality of being rigid and resistant to pressure. + quality firm impenetrable @@ -13056,13 +12962,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A hardness quality of giving little resistance to pressure. + quality PATO:0000387 @@ -13094,13 +12995,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course. + quality PATO:0000389 @@ -13284,14 +13180,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A branchiness quality inhering in a bearer by virtue of the bearer's having branches. + ramified ramiform quality @@ -13335,13 +13226,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals). + PATO:0001363 spiral quality @@ -13541,13 +13427,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches. + quality PATO:0000414 @@ -13568,13 +13449,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals). + quality PATO:0000415 @@ -13659,13 +13535,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth. + quality PATO:0000422 @@ -13685,13 +13556,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth. + quality PATO:0000423 @@ -13744,13 +13610,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly. + quality PATO:0000427 @@ -13771,13 +13632,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances. + quality PATO:0000428 @@ -13913,13 +13769,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation. + uniform quality constant @@ -13951,13 +13802,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement. + quality PATO:0000440 @@ -14238,13 +14084,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's deviation from normal or average. + quality aberrant atypia @@ -14269,13 +14110,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average. + quality average PATO:0000461 @@ -14297,12 +14133,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - @@ -14317,6 +14147,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality denoting the lack of an entity. + PATO:0001996 absence absent from organism @@ -14341,13 +14172,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of being clearly visible. + quality distinct PATO:0000463 @@ -14368,13 +14194,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of not being clearly visible. + quality faint PATO:0000464 @@ -14417,13 +14238,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's existence. + quality present in organism PATO:0000467 @@ -14477,13 +14293,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An amount which is relatively high. + PATO:0000420 PATO:0000650 increased number @@ -14685,14 +14496,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent. + responsive quality PATO:0000487 @@ -14714,13 +14520,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent. + unresponsive quality PATO:0000488 @@ -14853,13 +14654,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration quality of a process which is relatively high. + PATO:0000715 high time increased period @@ -14897,13 +14693,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration quality of a process which is relatively low. + PATO:0000716 decreased period decreased time @@ -15005,13 +14796,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm. + quality PATO:0000504 @@ -15030,13 +14816,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm. + quality PATO:0000505 @@ -15132,13 +14913,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus. + insensitive quality resistant @@ -15195,13 +14971,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's having sensitivity toward an external stimulus. + sensitive quality PATO:0000516 @@ -15542,14 +15313,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity. + quality photoresistant PATO:0000546 @@ -15570,13 +15336,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A photosensitivity quality inhering in a bearer by virtue of the bearer's exhibiting photosensitivity. + quality PATO:0000547 @@ -15841,13 +15602,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A height which is relatively low. + quality short PATO:0000569 @@ -15879,13 +15635,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A height which is relatively high. + quality tall PATO:0000570 @@ -15939,13 +15690,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A length quality which is relatively large. + long quality PATO:0000573 @@ -15977,13 +15723,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A length quality which is relatively small. + short quality shortened @@ -16092,13 +15833,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A weight which is relatively high. + heavy high weight quality @@ -16131,13 +15867,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A weight which is relatively low. + light weight low weight quality @@ -16158,13 +15889,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ). + hypertrophy quality PATO:0000584 @@ -16185,13 +15911,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ). + PATO:0000412 shrunken quality @@ -16225,13 +15946,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A size quality which is relatively high. + PATO:0001202 quality big @@ -16268,13 +15984,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A size quality which is relatively low. + hypoplasia underdeveloped quality @@ -16352,13 +16063,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A thickness which is relatively high. + high thickness stout thickened @@ -16394,13 +16100,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A thickness which is relatively low. + low thickness quality slender @@ -16457,13 +16158,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A volume which is relatively high. + high volume quality large volume @@ -16497,13 +16193,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A volume which is relatively low. + low volume quality small volume @@ -16559,13 +16250,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A width which is relatively small. + quality narrow PATO:0000599 @@ -16597,13 +16283,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A width which is relatively large. + quality broad wide @@ -16704,14 +16385,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view. + quality blocked PATO:0000608 @@ -16750,13 +16426,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view. + quality PATO:0000610 @@ -16797,13 +16468,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation. + quality PATO:0000613 @@ -16822,13 +16488,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A pattern where all the repeated elements are oriented in the same direction. + quality PATO:0000614 @@ -16930,13 +16591,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A positional quality inhering in a bearer by virtue of the bearer's being overfilled. + quality PATO:0000619 @@ -17219,13 +16875,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled. + quality PATO:0000633 @@ -17342,15 +16993,10 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process. + degeneration quality PATO:0000639 @@ -17404,13 +17050,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity. + fused fused to quality @@ -17456,13 +17097,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells. + PATO:0000943 hyperplasia quality @@ -17486,13 +17122,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue. + PATO:0000942 hypoplasia quality @@ -17596,13 +17227,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity. + unfused quality PATO:0000651 @@ -17766,13 +17392,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color brightness which is relatively high. + light quality PATO:0000665 @@ -18032,13 +17653,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase. + quality PATO:0000688 @@ -18057,13 +17673,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent. + PATO:0000429 uninterrupted quality @@ -18084,13 +17695,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions. + PATO:0000426 interrupted quality @@ -18176,13 +17782,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase. + quality PATO:0000695 @@ -18245,13 +17846,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A texture quality inhering in a bearer by virtue of the bearer's irregular surface. + PATO:0001616 coarse quality @@ -18273,13 +17869,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities. + quality PATO:0000701 @@ -18355,13 +17946,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A threshold which is relatively high. + PATO:0000709 high threshold quality @@ -18406,13 +17992,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A threshold which is relatively low. + PATO:0000707 low threshold quality @@ -18978,14 +18559,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A balance quality inhering in a bearer by virtue of the bearer's having balance. + quality PATO:0000757 @@ -19004,13 +18580,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A balance quality inhering in a bearer by virtue of the bearer's lacking balance. + quality PATO:0000758 @@ -19067,13 +18638,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity. + hyperactive quality PATO:0000760 @@ -19105,13 +18671,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity. + hypoactive quality PATO:0000761 @@ -19258,14 +18819,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement. + quality PATO:0000769 @@ -19285,13 +18841,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement. + quality PATO:0000770 @@ -20629,14 +20180,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction. + quality PATO:0000888 @@ -20667,14 +20213,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male fertility quality inhering in a male by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + quality male infertile PATO:0000890 @@ -20695,13 +20236,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. + quality PATO:0000891 @@ -20721,13 +20257,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + quality female infertile PATO:0000892 @@ -20962,13 +20493,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A rate which is relatively low. + slow rate quality PATO:0000911 @@ -21001,13 +20527,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A rate which is relatively high. + fast rate high rate quality @@ -21341,14 +20862,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's lacking organisation. + quality PATO:0000937 @@ -21368,13 +20884,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation. + quality PATO:0000938 @@ -21691,14 +21202,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. + quality PATO:0000955 @@ -21718,13 +21224,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + quality PATO:0000956 @@ -21818,13 +21319,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy. + non-transparent quality clouding @@ -21847,13 +21343,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A optical quality inhering in a bearer by virtue of the bearer's lacking opacity. + clear hyaline quality @@ -22117,14 +21608,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + quality porous PATO:0000982 @@ -22145,13 +21631,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + quality PATO:0000983 @@ -22171,14 +21652,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices. + quality PATO:0000984 @@ -22198,13 +21674,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices. + quality PATO:0000985 @@ -23021,13 +22492,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in an entity by virtue of the bearer's propensity to resist an external stimulus. + susceptibility quality PATO:0001043 @@ -23071,13 +22537,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus. + resistance quality PATO:0001046 @@ -24300,14 +23761,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus. + susceptible quality PATO:0001152 @@ -24329,13 +23785,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus. + insusceptible quality PATO:0001153 @@ -24357,13 +23808,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width. + quality PATO:0001154 @@ -24489,13 +23935,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A concentration which is higher relative to the normal or average. + high concentration quality PATO:0001162 @@ -24528,13 +23969,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A concentration which is lower relative to the normal or average. + low concentration quality PATO:0001163 @@ -24597,14 +24033,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired. + quality PATO:0001167 @@ -24623,13 +24054,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled. + quality PATO:0001168 @@ -24669,14 +24095,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way. + quality PATO:0001171 @@ -24697,13 +24118,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way. + quality PATO:0001172 @@ -25016,13 +24432,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent. + hyperresponsive increased responsivity quality @@ -25079,13 +24490,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent. + decreased responsivity hyporesponsive quality @@ -25289,13 +24695,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex. + serrate quality PATO:0001206 @@ -25545,13 +24946,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change. + variable quality PATO:0001227 @@ -25583,13 +24979,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color saturation which is of high purity. + bright quality vivid @@ -25652,13 +25043,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial quality inhering in a bearer by virtue of the bearer's being located toward the back or upper surface of an organism relative to another entity. + dorsal posterior_to (human torso) superior_to (human head) @@ -25681,13 +25067,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity. + distal quality PATO:0001234 @@ -27084,13 +26465,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A temperature which is relatively high. + PATO:0000678 high temperature hot @@ -27124,13 +26500,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A temperature which is relatively low. + PATO:0000677 cold low temperature @@ -27164,13 +26535,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of temperature which is relatively low. + low variability of temperature quality PATO:0001307 @@ -27202,13 +26568,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of temperature which is relatively high. + high variability of temperature quality PATO:0001308 @@ -27283,13 +26644,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration of temperature which is lesser relative to the normal or average enduring or continuing in time. + quality PATO:0001311 @@ -27320,13 +26676,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time. + high duration of temperature quality PATO:0001312 @@ -27346,13 +26697,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature. + quality PATO:0001313 @@ -27371,13 +26717,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature. + quality PATO:0001314 @@ -27453,14 +26794,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli. + quality PATO:0001318 @@ -27481,13 +26817,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli. + quality PATO:0001319 @@ -28216,13 +27547,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere. + quality PATO:0001355 @@ -28365,14 +27691,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed. + quality PATO:0001362 @@ -29354,13 +28675,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's having distinct structure. + quality PATO:0001411 @@ -29379,13 +28695,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure. + quality PATO:0001412 @@ -29464,13 +28775,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration which has regular start and/or end times. + quality PATO:0001416 @@ -29489,13 +28795,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times. + quality PATO:0001417 @@ -30257,14 +29558,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's dependence on oxygen. + quality PATO:0001455 @@ -30284,13 +29580,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's independence on oxygen. + quality PATO:0001456 @@ -30353,13 +29644,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen. + quality PATO:0001459 @@ -30379,13 +29665,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen. + quality PATO:0001460 @@ -30637,13 +29918,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A depth which is relatively low. + PATO:0001692 low depth shallow @@ -30718,13 +29994,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A position which is relatively high. + quality high position PATO:0001475 @@ -30756,13 +30027,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A positional which is relatively low. + quality low position PATO:0001476 @@ -30950,13 +30216,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together. + PATO:0001840 compact compressed @@ -31105,12 +30366,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001493 @@ -31124,12 +30380,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001494 @@ -31265,13 +30516,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development. + quality underdeveloped PATO:0001501 @@ -31446,13 +30692,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A functionality quality held by the bearer when the latter is able to perform a regular function(s). + quality PATO:0001510 @@ -31472,13 +30713,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s). + PATO:0001640 disfunctional functional failure @@ -31991,14 +31227,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid. + soluble quality PATO:0001537 @@ -32020,13 +31251,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A solubility quality inhering in a substance by virtue of the bearer's inability of a substance to dissolve in a liquid. + insoluble quality PATO:0001538 @@ -32146,13 +31372,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking. + bendy quality PATO:0001544 @@ -32173,13 +31394,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking. + stiff quality stiffness @@ -32274,13 +31490,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity toward an external stimulus which is higher than normal/average. + high sensitivity toward increased sensitivity quality @@ -32315,13 +31526,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity toward an external stimulus which is lower than normal/average. + decreased sensitivity low sensitivity toward quality @@ -32356,13 +31562,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of a process which is higher than normal or average. + high sensitivity of occurrent increased sensitivity of occurrent quality @@ -32396,13 +31597,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of a process which is lower than normal or average. + decreased sensitivity of occurrent low sensitivity of occurrent quality @@ -32436,13 +31632,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of occurrent to oxygen which is higher than normal or average. + high sensitivity of occurrent to oxygen quality PATO:0001553 @@ -32475,13 +31666,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of a process to oxygen which is lower than normal or average. + low sensitivity of occurrent to oxygen quality PATO:0001554 @@ -32657,13 +31843,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mass which is lower than normal or average. + PATO:0000579 low mass small mass @@ -32697,13 +31878,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mass which is higher than normal or average. + PATO:0000578 high mass large mass @@ -32754,14 +31930,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up. + PATO:0001513 diffuse scattered @@ -32784,13 +31955,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up. + quality PATO:0001567 @@ -32931,13 +32097,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A pressure which is relatively low. + low pressure quality PATO:0001575 @@ -32969,13 +32130,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A pressure which is relatively high. + high pressure quality PATO:0001576 @@ -33007,13 +32163,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A permeability which is relatively high. + high permeability quality PATO:0001577 @@ -33046,13 +32197,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A permeability which is relatively low. + low permeability quality PATO:0001578 @@ -33106,13 +32252,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A contractility which is relatively high. + high contractility quality PATO:0001580 @@ -33145,13 +32286,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A contractility which is relatively low. + low contractility quality PATO:0001581 @@ -33203,13 +32339,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability which is relatively low. + low variability quality PATO:0001583 @@ -33241,13 +32372,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability which is relatively high. + high variability quality PATO:0001584 @@ -33326,13 +32452,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of rate which is relatively high. + high variability of rate quality PATO:0001587 @@ -33364,13 +32485,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of rate which is relatively low. + low variability of rate quality PATO:0001588 @@ -33462,13 +32578,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A curvature which is relatively high. + quality PATO:0001592 @@ -33499,13 +32610,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A curvature which is relatively low. + quality PATO:0001593 @@ -33575,13 +32681,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A depth quality which is relatively high. + PATO:0001666 deep quality @@ -33738,13 +32839,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A life span which is relatively high. + high life span quality PATO:0001603 @@ -33775,13 +32871,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A life span which is relatively low. + low life span quality PATO:0001604 @@ -33947,13 +33038,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of color which is relatively high. + high variability of color quality PATO:0001612 @@ -33985,13 +33071,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of color which is relatively low. + low variability of color quality PATO:0001613 @@ -34011,13 +33092,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color. + quality PATO:0001614 @@ -34036,13 +33112,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour. + quality PATO:0001615 @@ -34104,13 +33175,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tonicity which is relatively high. + high tonicity quality PATO:0001618 @@ -34143,13 +33209,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tonicity which is relatively low. + low tonicity quality PATO:0001619 @@ -34202,13 +33263,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A turgor which is relatively low. + low turgor quality PATO:0001621 @@ -34241,13 +33297,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A turgor which is relatively high. + high turgor quality PATO:0001622 @@ -34302,13 +33353,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s). + PATO:0001556 PATO:0001568 PATO:0001641 @@ -34351,13 +33397,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s). + high functionality quality PATO:0001625 @@ -34399,13 +33440,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality. + quality adequate PATO:0001627 @@ -34425,13 +33461,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality. + quality inadequate PATO:0001628 @@ -34568,14 +33599,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being essential or indispensable. + quality PATO:0001635 @@ -34594,13 +33620,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable. + quality PATO:0001636 @@ -34638,13 +33659,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable. + quality PATO:0001638 @@ -34663,13 +33679,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable. + quality PATO:0001639 @@ -34851,13 +33862,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A resistance to a stimulus which is relatively high. + high resistance to increased resistance quality @@ -34892,13 +33898,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A resistance to a stimulus which is relatively low. + decreased resistance low resistance to quality @@ -34947,13 +33948,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity. + aligned quality aligned to @@ -34975,13 +33971,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity. + misaligned unaligned with quality @@ -35036,13 +34027,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A osmolarity which is relatively low. + low osmolarity quality PATO:0001656 @@ -35075,13 +34061,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A osmolarity which is relatively high. + high osmolarity quality PATO:0001657 @@ -35216,13 +34197,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A solubility which is relatively high. + high solubility quality PATO:0001663 @@ -35256,13 +34232,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A solubility which is relatively low. + low solubility quality PATO:0001664 @@ -35374,13 +34345,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A susceptibility toward an external stimulus which is higher than normal/average. + high susceptibility toward increased susceptibility quality @@ -35415,13 +34381,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A susceptibility toward an external stimulus which is lower than normal/average. + decreased susceptibility low susceptibility toward quality @@ -35456,13 +34417,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A distribution which is relatively high. + high distribution quality PATO:0001671 @@ -35494,13 +34450,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A distribution which is relatively low. + low distribution quality PATO:0001672 @@ -35574,13 +34525,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An efficiency which is relatively low. + low efficiency quality PATO:0001675 @@ -35612,13 +34558,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An efficiency which is relatively high. + high efficiency quality PATO:0001676 @@ -35638,14 +34579,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An efficiency quality inhering in a bearer by virtue of the bearer's lacking efficiency. + quality PATO:0001677 @@ -35664,13 +34600,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency. + quality PATO:0001678 @@ -35783,13 +34714,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A magnetism which is relatively high. + high magnetism quality PATO:0001683 @@ -35822,13 +34748,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A magnetism which is relatively low. + low magnetism quality PATO:0001684 @@ -35849,14 +34770,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism. + quality PATO:0001685 @@ -35876,13 +34792,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A magnetic quality inhering in a bearer by virtue of the bearer's inability to exert magnitism. + quality PATO:0001686 @@ -35933,13 +34844,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elevation which is relatively high. + high elevation quality elevated @@ -35972,13 +34878,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elevation which is relatively low. + low elevation quality PATO:0001689 @@ -35998,14 +34899,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted. + quality PATO:0001690 @@ -36026,13 +34922,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted. + quality PATO:0001691 @@ -36075,13 +34966,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A viscosity which relatively high. + high viscosity quality PATO:0001693 @@ -36114,13 +35000,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A viscosity which relatively low. + low viscosity quality PATO:0001694 @@ -36153,13 +35034,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fecundity which is relatively high. + high fecundity quality PATO:0001695 @@ -36192,13 +35068,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fecundity which is relatively low. + low fecundity quality PATO:0001696 @@ -36231,13 +35102,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A photosensitivity which is relatively low. + low photosensitivity quality PATO:0001697 @@ -36271,13 +35137,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A photosensitivity which is relatively high. + high photosensitivity quality PATO:0001698 @@ -36299,13 +35160,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sleep pattern which has regular start and/or end times. + quality PATO:0001699 @@ -36324,13 +35180,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sleep pattern which has irregular start and/or end times. + quality PATO:0001700 @@ -36349,13 +35200,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development. + quality PATO:0001701 @@ -36454,14 +35300,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A behavioral quality inhering in a bearer by virtue of the bearer's disposition to lack activity. + quality PATO:0001706 @@ -36481,13 +35322,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity. + quality PATO:0001707 @@ -36598,13 +35434,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A perimeter which is relatively high. + quality PATO:0001712 @@ -36635,13 +35466,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A perimeter which is relatively low. + quality PATO:0001713 @@ -36672,13 +35498,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A diameter which is relatively large. + quality PATO:0001714 @@ -36709,13 +35530,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A diameter which is relatively small. + quality PATO:0001715 @@ -36734,13 +35550,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking. + quality resilient strong @@ -36884,13 +35695,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female receptivity which is relatively high. + high female receptivity quality PATO:0001723 @@ -36923,13 +35729,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female receptivity which is relatively low. + low female receptivity quality PATO:0001724 @@ -36962,13 +35763,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male receptivity which is relatively high. + high male receptivity quality PATO:0001725 @@ -37001,13 +35797,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male receptivity which is relatively low. + low male receptivity quality PATO:0001726 @@ -37345,13 +36136,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A radioactivity which is relatively low. + high radioactivity quality PATO:0001742 @@ -37383,13 +36169,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A radioactivity which is relatively high. + low radioactivity quality PATO:0001743 @@ -37510,13 +36291,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth. + hypoplastic growth pedomorphic growth quality @@ -37575,13 +36351,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth. + hyperplastic growth quality PATO:0001752 @@ -37743,12 +36514,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001760 @@ -37762,12 +36528,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001761 @@ -37781,12 +36542,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001762 @@ -37800,12 +36556,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001763 @@ -37831,13 +36582,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An age which is high relative to the normal or average. + high age quality PATO:0001764 @@ -37869,13 +36615,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An age which is low relative to the normal or average. + low age quality PATO:0001765 @@ -38098,13 +36839,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A flexibility which is relatively high. + high flexibility quality PATO:0001776 @@ -38137,13 +36873,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A flexibility which is relatively low. + low flexibility quality PATO:0001777 @@ -38176,13 +36907,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A strength which is relatively high. + high strength quality PATO:0001778 @@ -38214,13 +36940,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A strength which is relatively low. + weak quality PATO:0001779 @@ -38292,13 +37013,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An intensity which is relatively high. + high intensity quality PATO:0001782 @@ -38330,13 +37046,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An intensity which is relatively low. + low intensity quality PATO:0001783 @@ -38459,13 +37170,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A density which is higher relative to the normal or average. + high density quality PATO:0001788 @@ -38518,13 +37224,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A density which is lower relative to the normal or average. + low density quality PATO:0001790 @@ -38638,13 +37339,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coiling which is relatively high. + high coiling quality PATO:0001795 @@ -38677,13 +37373,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coiling which is relatively low. + low coiling quality PATO:0001796 @@ -38922,13 +37613,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity to irradiation which is relatively low. + low sensitivity to irradiation quality PATO:0001807 @@ -38961,13 +37647,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity to irradiation which is relatively high. + high sensitivity to irradiation quality PATO:0001808 @@ -39131,13 +37812,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fatigability which is relatively high. + high fatigability quality PATO:0001816 @@ -39159,13 +37835,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fatigability which is relatively low. + low fatigability quality PATO:0001817 @@ -39186,13 +37857,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time. + quality PATO:0001818 @@ -39244,13 +37910,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's having no opening. + unperforated quality PATO:0001821 @@ -39292,14 +37953,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid. + quality PATO:0001823 @@ -39319,13 +37975,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid. + quality PATO:0001824 @@ -39357,13 +38008,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wetness quality that is relatively high. + quality PATO:0001825 @@ -39394,13 +38040,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wetness quality that is relatively low. + low wetness quality PATO:0001826 @@ -39489,13 +38130,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female fertility which is relatively low. + low female fertility quality PATO:0001830 @@ -39528,13 +38164,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female fertility which is relatively high. + high female fertility quality PATO:0001831 @@ -39567,13 +38198,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male fertility which is relatively high. + high male fertility quality PATO:0001832 @@ -39606,13 +38232,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male fertility which is relatively low. + low male fertility quality PATO:0001833 @@ -39645,13 +38266,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fertility which is relatively low. + low fertility quality PATO:0001834 @@ -39684,13 +38300,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fertility which is relatively high. + high fertility quality PATO:0001835 @@ -39753,13 +38364,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A flow that is relatively low. + low flow quality PATO:0001838 @@ -39791,13 +38397,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fluid flow that is relatively high. + high flow quality PATO:0001839 @@ -39881,13 +38482,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An acidity which is relatively low. + low acidity quality PATO:0001843 @@ -39919,13 +38515,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An acidity which is relatively high. + high acidity quality PATO:0001844 @@ -40203,13 +38794,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality in a bearer by virtue of the bearer's curving inward. + quality PATO:0001857 @@ -40260,13 +38846,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coordination which is relatively high. + high coordination quality PATO:0001859 @@ -40299,13 +38880,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coordination which is relatively low. + low coordination quality PATO:0001860 @@ -40326,14 +38902,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve. + fascicled quality PATO:0001861 @@ -40375,13 +38946,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration. + quality PATO:0001863 @@ -40838,14 +39404,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water. + quality PATO:0001884 @@ -40865,13 +39426,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water. + quality PATO:0001885 @@ -40891,13 +39447,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water. + quality PATO:0001886 @@ -40917,13 +39468,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water. + quality PATO:0001887 @@ -41050,13 +39596,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An odor quality of having decreased odor. + quality PATO:0001892 @@ -41087,13 +39628,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An odor quality of having increased odor. + quality PATO:0001893 @@ -41144,13 +39680,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. + quality PATO:0001896 @@ -41169,13 +39700,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structure quality inhering in a bearer by virtue of the bearer's having a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. + quality PATO:0001897 @@ -41207,13 +39733,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A circumference which is relatively high. + quality PATO:0001898 @@ -41244,13 +39765,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A circumference which is relatively low. + quality PATO:0001899 @@ -41269,13 +39785,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north. + quality PATO:0001900 @@ -41294,13 +39805,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south. + quality PATO:0001901 @@ -41798,13 +40304,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fluorescence which is higher than normal. + high fluorescence quality PATO:0001926 @@ -41836,13 +40337,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fluorescence which is lower than normal. + low fluorescence quality PATO:0001927 @@ -41908,13 +40404,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape. + quality PATO:0001930 @@ -41933,13 +40424,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape. + quality PATO:0001931 @@ -42460,13 +40946,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of size which is relatively low. + low variability of size quality PATO:0001957 @@ -42498,13 +40979,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of size which is relatively high. + high variability of size quality PATO:0001958 @@ -42524,13 +41000,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated. + quality PATO:0001959 @@ -42836,13 +41307,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex. + quality PATO:0001975 @@ -43272,13 +41738,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An amount which is relatively low. + PATO:0000419 PATO:0000468 decreased number @@ -43384,13 +41845,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. + PATO:0001569 decreased number of has decreased number of @@ -43426,13 +41882,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. + PATO:0001560 has extra parts of has increased number of @@ -43537,12 +41988,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - @@ -43550,6 +41995,7 @@ Association is weaker than correlation or proportionality. These relations may b A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave. + Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png quality PATO:0002007 @@ -43576,13 +42022,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave. + Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png quality PATO:0002008 @@ -43741,12 +42182,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + high magnitude quality PATO:0002017 @@ -43759,12 +42195,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + low magnitude quality PATO:0002018 @@ -43914,13 +42345,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time. + george gkoutos 2008-12-18T12:49:19Z quality @@ -43978,13 +42404,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An osmolality which is relatively low. + george 2009-01-27T10:55:33Z low osmolality @@ -44019,13 +42440,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An osmolality which is relatively high. + george 2009-01-27T10:56:19Z high osmolality @@ -44225,13 +42641,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer whose structure which does not deteriorate. + george 2009-02-03T11:14:54Z not degenerate @@ -44253,13 +42664,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces. + quality PATO:0002039 @@ -44278,13 +42684,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface. + Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx quality PATO:0002040 @@ -44336,13 +42737,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An anterior-posterior diameter quality which is relatively small. + low anterior-posterior diameter quality PATO:0002042 @@ -44374,13 +42770,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An anterior-posterior diameter quality which is relatively large. + high anterior-posterior diameter quality PATO:0002043 @@ -44572,13 +42963,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An occurrence which is relatively high. + George Gkoutos 2009-03-26T11:10:11Z increased incidence @@ -44611,13 +42997,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An occurrence which is relatively low. + George Gkoutos 2009-03-26T11:12:35Z decreased incidence @@ -44694,13 +43075,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fragility which is relatively high. + George Gkoutos 2009-03-26T04:01:37Z quality @@ -44734,13 +43110,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fragility which is relatively low. + George Gkoutos 2009-03-26T04:02:14Z quality @@ -44774,13 +43145,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An area which is relatively high. + George Gkoutos 2009-03-30T04:11:43Z quality @@ -44813,13 +43179,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An area which is relatively low. + George Gkoutos 2009-03-30T04:12:11Z quality @@ -45018,13 +43379,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration. + George Gkoutos 2009-07-01T02:31:53Z quality @@ -45046,13 +43402,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration. + George Gkoutos 2009-07-01T02:33:41Z quality @@ -45110,13 +43461,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An affinity which is relatively high. + George Gkoutos 2009-09-18T01:29:42Z quality @@ -45151,13 +43497,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An affinity which is relatively low. + George Gkoutos 2009-09-18T01:30:11Z quality @@ -45216,13 +43557,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An avidity which is relatively high. + George Gkoutos 2009-09-18T01:45:56Z quality @@ -45257,13 +43593,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An avidity which is relatively low. + George Gkoutos 2009-09-18T01:45:59Z quality @@ -45772,13 +44103,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type. + george 2009-10-05T12:58:54Z quality @@ -45800,13 +44126,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A cellular quality inhering in a bearer by virtue of having not yet acquired a special structure of function. + george 2009-10-05T12:59:21Z quality @@ -46075,13 +44396,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes. + george 2009-10-05T03:37:05Z PATO:0000649 @@ -46684,14 +45000,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer being suitable for use as food. + george 2009-10-26T01:21:34Z quality @@ -46714,13 +45025,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food. + george 2009-10-26T01:22:27Z quality @@ -46804,13 +45110,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A radiopacity that is relatively high. + george 2009-10-30T03:30:39Z quality @@ -46844,13 +45145,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A radiopacity that is relatively low. + george 2009-10-30T03:31:31Z quality @@ -46907,13 +45203,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A virulence that is relatively low. + george 2009-10-30T05:05:02Z attenuated @@ -46947,13 +45238,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A virulence that is relatively high. + george 2009-10-30T05:13:10Z quality @@ -47864,14 +46150,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. + George Gkoutos 2010-03-10T03:25:59Z quality @@ -47892,13 +46173,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic. + George Gkoutos 2010-03-10T03:26:41Z quality @@ -47964,14 +46240,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge. + George Gkoutos 2010-03-10T03:30:06Z quality @@ -47992,13 +46263,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge. + George Gkoutos 2010-03-10T03:30:39Z quality @@ -48530,14 +46796,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group. + george 2010-07-09T01:50:14Z quality @@ -48570,13 +46831,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups. + george 2010-07-09T01:51:52Z hyperphosphorylated @@ -48610,13 +46866,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully. + george 2010-07-09T01:54:22Z hypophosporylated @@ -49129,13 +47380,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A force which relative high. + george 2010-08-04T11:12:20Z increased force amplitude @@ -49169,13 +47415,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A force which is relative low. + george 2010-08-04T11:13:13Z decreased force amplitude @@ -49225,14 +47466,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A degree of pigmentation quality inhering in a bearer by virtue of the bearer's having substances produced by living organisms that have a color resulting from selective color absorption. + george 2010-08-09T04:16:49Z quality @@ -49254,13 +47490,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A degree of pigmentation quality inhering in a bearer by virtue of the bearer's lacking substances produced by living organisms that have a color resulting from selective color absorption. + george 2010-08-09T04:17:04Z depigmented @@ -49295,13 +47526,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A degree of pigmentation quality that is relatively high. + george 2010-08-09T04:17:19Z hyperpigmented @@ -49336,13 +47562,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A degree of pigmentation quality that is relative low. + george 2010-08-09T04:17:37Z hypopigmented @@ -49611,13 +47832,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group. + george 2010-09-16T09:04:21Z quality @@ -49760,13 +47976,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner. + george 2010-10-26T02:00:20Z accumulated @@ -49789,13 +48000,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An accumulation which is relative low. + george 2010-10-26T02:04:45Z quality @@ -50039,13 +48245,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mobility which is relative high. + george 2011-03-09T09:16:03Z quality @@ -50078,13 +48279,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mobility which is relative low. + george 2011-03-09T09:16:47Z quality @@ -50127,13 +48323,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity. + george 2011-03-10T09:07:57Z quality @@ -50154,13 +48345,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity. + george 2011-03-10T09:08:37Z quality @@ -50193,13 +48379,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elasticity which is relatively high. + George Gkoutos 2011-03-30T11:50:21Z quality @@ -50232,13 +48413,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elasticity which is relatively low. + George Gkoutos 2011-03-30T11:50:39Z quality @@ -50434,13 +48610,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A cellular motility which is lower relative to the normal or average. + quality PATO:0002297 @@ -50471,13 +48642,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A cellular motility which is higher relative to the normal or average. + quality PATO:0002298 @@ -50531,12 +48697,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - @@ -50544,6 +48704,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality that has a value that is increased compared to normal or average. + George Gkoutos 2011-06-16T06:39:43Z quality @@ -50574,12 +48735,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - @@ -50587,6 +48742,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality that has a value that is decreased compared to normal or average. + George Gkoutos 2011-06-16T06:40:15Z quality @@ -50618,13 +48774,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a process that has a value that is decreased compared to normal or average. + George Gkoutos 2011-06-16T06:50:59Z quality @@ -50656,13 +48807,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of an object that has a value that is decreased compared to normal or average. + George Gkoutos 2011-06-16T06:51:54Z quality @@ -50694,13 +48840,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a process that has a value that is increased compared to normal or average. + George Gkoutos 2011-06-16T06:53:08Z quality @@ -50732,13 +48873,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of an object that has a value that is increased compared to normal or average. + George Gkoutos 2011-06-16T06:54:01Z quality @@ -51095,12 +49231,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + George Gkoutos 2011-10-12T12:50:59Z quality @@ -51114,12 +49245,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + George Gkoutos 2011-10-12T12:51:19Z quality @@ -51245,13 +49371,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An angle which is relatively high. + George Gkoutos 2011-11-23T12:06:38Z quality @@ -51285,13 +49406,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An angle which is relatively low. + George Gkoutos 2011-11-23T12:06:54Z quality @@ -51355,13 +49471,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact. + gkoutos 2012-01-31T12:28:16Z quality @@ -51383,13 +49494,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact. + gkoutos 2012-01-31T12:28:57Z quality @@ -51423,13 +49529,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A adhesivity which is relatively high. + gkoutos 2012-01-31T12:32:43Z quality @@ -51462,13 +49563,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A adhesivity which is relatively low. + gkoutos 2012-01-31T12:42:22Z quality @@ -51887,13 +49983,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of an physical object that is currently realizing one of its functions. + gkoutos 2012-01-31T04:52:04Z quality @@ -51914,13 +50005,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a physical object that is currently realizing none of its functions. + gkoutos 2012-01-31T04:52:14Z quality @@ -52061,13 +50147,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tendency which is relatively high. + gkoutos 2012-03-16T06:31:57Z quality @@ -52102,13 +50183,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tendency which is relatively low. + gkoutos 2012-03-16T06:32:57Z quality @@ -52152,13 +50228,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width. + gkoutos 2012-04-18T06:31:29Z quality @@ -52410,13 +50481,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structure quality inhering in a bearer by virtue of the bearer's being filled with air. + gkoutos 2012-07-05T02:55:10Z air-filled @@ -52438,13 +50504,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structure quality inhering in a bearer by virtue of the bearer's being not filed with air. + gkoutos 2012-07-05T02:56:07Z quality @@ -52562,13 +50623,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A waxiness which is relatively high. + gkoutos 2012-07-05T03:18:03Z quality @@ -52601,13 +50657,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A waxiness which is relatively low. + gkoutos 2012-07-05T03:18:14Z quality @@ -52828,13 +50879,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus. + gkoutos 2012-11-15T05:32:07Z quality @@ -52868,13 +50914,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus. + gkoutos 2012-11-15T05:33:05Z quality @@ -53888,13 +51929,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures. + gkoutos 2013-01-29T10:59:42Z quality @@ -53915,13 +51951,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures. + gkoutos 2013-01-29T11:00:20Z quality @@ -54136,13 +52167,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed. + gkoutos 2013-04-08T08:43:31Z quality @@ -54544,13 +52570,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position. + gkoutos 2013-09-15T12:03:45Z quality @@ -54583,13 +52604,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position. + gkoutos 2013-09-15T12:05:06Z quality @@ -55000,13 +53016,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally. + gkoutos 2013-10-10T05:12:15Z anterodorsally directed @@ -55072,13 +53083,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distally. + gkoutos 2013-10-10T05:14:37Z distally directed @@ -55100,13 +53106,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally. + gkoutos 2013-10-10T05:15:24Z dorsally directed @@ -55304,13 +53305,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally. + gkoutos 2013-10-10T05:19:36Z posterodorsally directed @@ -55782,13 +53778,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally. + segerdel 2014-03-11T11:28:39Z antero-distal orientation @@ -55809,13 +53800,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally. + segerdel 2014-03-11T11:29:22Z postero-distal orientation @@ -56457,13 +54443,8 @@ height'). - - - - - - A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts. + wasila.dahdul 2014-09-25T15:11:47Z quality @@ -56484,13 +54465,8 @@ height'). - - - - - - A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities. + wasila.dahdul 2014-09-25T15:12:35Z quality @@ -56953,13 +54929,8 @@ height'). - - - - - - A decrease in the ability of a process to produce its output. + cjm quality PATO:0015003 @@ -56991,13 +54962,8 @@ height'). - - - - - - A increase in the ability of a process to produce its output. + cjm quality PATO:0015004 @@ -57141,13 +55107,8 @@ height'). - - - - - - An increase in humidity. + quality humid PATO:0015010 @@ -57179,13 +55140,8 @@ height'). - - - - - - An decrease in humidity. + quality PATO:0015011 @@ -57254,13 +55210,8 @@ height'). - - - - - - An increase in illumination. + quality illuminated PATO:0015014 @@ -57292,13 +55243,8 @@ height'). - - - - - - An decrease in illumination. + quality PATO:0015015 @@ -57450,13 +55396,8 @@ height'). - - - - - - An increase in combustibility. + combustible quality PATO:0015022 @@ -57482,13 +55423,8 @@ height'). - - - - - - An decrease in combustibility. + quality noncombustible PATO:0015023 @@ -57545,13 +55481,8 @@ height'). - - - - - - An decrease in porosity. + quality PATO:0015025 @@ -57634,13 +55565,8 @@ height'). - - - - - - A decrease in stability. + quality PATO:0015028 @@ -57782,14 +55708,9 @@ height'). - - - - - - A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration. + pbuttigieg 2015-09-01T16:18:57Z undrinkable @@ -57810,13 +55731,8 @@ height'). - - - - - - A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration. + pbuttigieg 2015-09-01T16:19:02Z drinkable @@ -61016,13 +58932,8 @@ height'). - - - - - - North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west. + Luke Slater 2017-12-22T14:16:43Z quality @@ -61043,13 +58954,8 @@ height'). - - - - - - East is one of the four cardinal directions or points of the compass. It is the opposite direction from west. + Luke Slater 2017-12-22T14:16:43Z quality @@ -61070,13 +58976,8 @@ height'). - - - - - - South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west. + Luke Slater 2017-12-22T14:16:43Z quality @@ -61097,13 +58998,8 @@ height'). - - - - - - West is one of the four cardinal directions or points of the compass. It is the opposite direction from east. + Luke Slater 2017-12-22T14:16:43Z quality @@ -61351,28 +59247,6 @@ This interpretation is *not* the same as an at-all-times relation - - - - is_opposite_of - x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). - quality - 'increase in temperature' is-opposite-of 'decrease in temperature' - 'anterior end of organism' is-opposite-of 'posterior end of organism' - is opposite of - is_opposite_of - is_opposite_of - RO:0002604 - - - - + + + + + @@ -4653,6 +4659,7 @@ Association is weaker than correlation or proportionality. These relations may b A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely. + quality PATO:0000299 @@ -4673,6 +4680,7 @@ Association is weaker than correlation or proportionality. These relations may b A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely. + quality fixed PATO:0000300 @@ -4717,6 +4725,7 @@ Association is weaker than correlation or proportionality. These relations may b A speed which is relatively high. + high speed quality fast speed @@ -4739,6 +4748,7 @@ Association is weaker than correlation or proportionality. These relations may b A speed which is relatively low. + slow slow speed quality @@ -4793,6 +4803,7 @@ Association is weaker than correlation or proportionality. These relations may b An age which is relatively high. + quality PATO:0000308 @@ -4812,6 +4823,7 @@ Association is weaker than correlation or proportionality. These relations may b An age which is relatively low. + quality PATO:0000309 @@ -5090,6 +5102,7 @@ Association is weaker than correlation or proportionality. These relations may b A color brightness which is relatively low. + dark quality PATO:0000327 @@ -5110,6 +5123,7 @@ Association is weaker than correlation or proportionality. These relations may b A color saturation which is of low purity. + pale quality dull @@ -5151,6 +5165,7 @@ Association is weaker than correlation or proportionality. These relations may b A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency. + quality PATO:0000330 @@ -5172,6 +5187,7 @@ Association is weaker than correlation or proportionality. These relations may b A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color. + quality PATO:0000331 @@ -5242,6 +5258,7 @@ Association is weaker than correlation or proportionality. These relations may b A color quality inhering in a bearer by virtue of the bearer's having color. + PATO:0000332 quality pigmented @@ -5351,6 +5368,7 @@ Association is weaker than correlation or proportionality. These relations may b A compatibility quality inhering in a bearer by virtue of the bearer's being capable of harmonious coexistence. + quality PATO:0000344 @@ -5372,6 +5390,7 @@ Association is weaker than correlation or proportionality. These relations may b A compatibility quality inhering in a bearer by virtue of the bearer's being incapable of harmonious coexistence. + quality PATO:0000345 @@ -5602,6 +5621,7 @@ Association is weaker than correlation or proportionality. These relations may b A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point. + quality PATO:0000365 @@ -5681,6 +5701,7 @@ Association is weaker than correlation or proportionality. These relations may b A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point. + quality PATO:0000370 @@ -5734,6 +5755,7 @@ Association is weaker than correlation or proportionality. These relations may b A distance which is greater relative to the normal or average. + quality long distance PATO:0000374 @@ -5756,6 +5778,7 @@ Association is weaker than correlation or proportionality. These relations may b A distance which is lesser relative to the normal or average. + quality short distance PATO:0000375 @@ -5822,6 +5845,7 @@ Association is weaker than correlation or proportionality. These relations may b A frequency which is relatively high. + high frequency quality frequent @@ -5845,6 +5869,7 @@ Association is weaker than correlation or proportionality. These relations may b A frequency which is relatively low. + low frequency quality infrequent @@ -5930,6 +5955,7 @@ Association is weaker than correlation or proportionality. These relations may b A hardness quality of being rigid and resistant to pressure. + quality firm impenetrable @@ -5955,6 +5981,7 @@ Association is weaker than correlation or proportionality. These relations may b A hardness quality of giving little resistance to pressure. + quality PATO:0000387 @@ -5987,6 +6014,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course. + quality PATO:0000389 @@ -6172,6 +6200,7 @@ Association is weaker than correlation or proportionality. These relations may b A branchiness quality inhering in a bearer by virtue of the bearer's having branches. + ramified ramiform quality @@ -6216,6 +6245,7 @@ Association is weaker than correlation or proportionality. These relations may b A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals). + PATO:0001363 spiral quality @@ -6416,6 +6446,7 @@ Association is weaker than correlation or proportionality. These relations may b A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches. + quality PATO:0000414 @@ -6437,6 +6468,7 @@ Association is weaker than correlation or proportionality. These relations may b A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals). + quality PATO:0000415 @@ -6522,6 +6554,7 @@ Association is weaker than correlation or proportionality. These relations may b A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth. + quality PATO:0000422 @@ -6542,6 +6575,7 @@ Association is weaker than correlation or proportionality. These relations may b A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth. + quality PATO:0000423 @@ -6595,6 +6629,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly. + quality PATO:0000427 @@ -6616,6 +6651,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances. + quality PATO:0000428 @@ -6752,6 +6788,7 @@ Association is weaker than correlation or proportionality. These relations may b A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation. + uniform quality constant @@ -6784,6 +6821,7 @@ Association is weaker than correlation or proportionality. These relations may b A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement. + quality PATO:0000440 @@ -7065,6 +7103,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's deviation from normal or average. + quality aberrant atypia @@ -7090,6 +7129,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average. + quality average PATO:0000461 @@ -7125,6 +7165,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality denoting the lack of an entity. + PATO:0001996 absence absent from organism @@ -7150,6 +7191,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of being clearly visible. + quality distinct PATO:0000463 @@ -7171,6 +7213,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of not being clearly visible. + quality faint PATO:0000464 @@ -7214,6 +7257,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's existence. + quality present in organism PATO:0000467 @@ -7257,6 +7301,7 @@ Association is weaker than correlation or proportionality. These relations may b An amount which is relatively high. + PATO:0000420 PATO:0000650 increased number @@ -7460,6 +7505,7 @@ Association is weaker than correlation or proportionality. These relations may b A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent. + responsive quality PATO:0000487 @@ -7482,6 +7528,7 @@ Association is weaker than correlation or proportionality. These relations may b A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent. + unresponsive quality PATO:0000488 @@ -7604,6 +7651,7 @@ Association is weaker than correlation or proportionality. These relations may b A duration quality of a process which is relatively high. + PATO:0000715 high time increased period @@ -7631,6 +7679,7 @@ Association is weaker than correlation or proportionality. These relations may b A duration quality of a process which is relatively low. + PATO:0000716 decreased period decreased time @@ -7733,6 +7782,7 @@ Association is weaker than correlation or proportionality. These relations may b A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm. + quality PATO:0000504 @@ -7752,6 +7802,7 @@ Association is weaker than correlation or proportionality. These relations may b A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm. + quality PATO:0000505 @@ -7848,6 +7899,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus. + insensitive quality resistant @@ -7905,6 +7957,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's having sensitivity toward an external stimulus. + sensitive quality PATO:0000516 @@ -8247,6 +8300,7 @@ Association is weaker than correlation or proportionality. These relations may b A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity. + quality photoresistant PATO:0000546 @@ -8268,6 +8322,7 @@ Association is weaker than correlation or proportionality. These relations may b A photosensitivity quality inhering in a bearer by virtue of the bearer's exhibiting photosensitivity. + quality PATO:0000547 @@ -8522,6 +8577,7 @@ Association is weaker than correlation or proportionality. These relations may b A height which is relatively low. + quality short PATO:0000569 @@ -8543,6 +8599,7 @@ Association is weaker than correlation or proportionality. These relations may b A height which is relatively high. + quality tall PATO:0000570 @@ -8586,6 +8643,7 @@ Association is weaker than correlation or proportionality. These relations may b A length quality which is relatively large. + long quality PATO:0000573 @@ -8607,6 +8665,7 @@ Association is weaker than correlation or proportionality. These relations may b A length quality which is relatively small. + short quality shortened @@ -8705,6 +8764,7 @@ Association is weaker than correlation or proportionality. These relations may b A weight which is relatively high. + heavy high weight quality @@ -8727,6 +8787,7 @@ Association is weaker than correlation or proportionality. These relations may b A weight which is relatively low. + light weight low weight quality @@ -8748,6 +8809,7 @@ Association is weaker than correlation or proportionality. These relations may b An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ). + hypertrophy quality PATO:0000584 @@ -8769,6 +8831,7 @@ Association is weaker than correlation or proportionality. These relations may b A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ). + PATO:0000412 shrunken quality @@ -8792,6 +8855,7 @@ Association is weaker than correlation or proportionality. These relations may b A size quality which is relatively high. + PATO:0001202 quality big @@ -8818,6 +8882,7 @@ Association is weaker than correlation or proportionality. These relations may b A size quality which is relatively low. + hypoplasia underdeveloped quality @@ -8885,6 +8950,7 @@ Association is weaker than correlation or proportionality. These relations may b A thickness which is relatively high. + high thickness stout thickened @@ -8910,6 +8976,7 @@ Association is weaker than correlation or proportionality. These relations may b A thickness which is relatively low. + low thickness quality slender @@ -8956,6 +9023,7 @@ Association is weaker than correlation or proportionality. These relations may b A volume which is relatively high. + high volume quality large volume @@ -8979,6 +9047,7 @@ Association is weaker than correlation or proportionality. These relations may b A volume which is relatively low. + low volume quality small volume @@ -9024,6 +9093,7 @@ Association is weaker than correlation or proportionality. These relations may b A width which is relatively small. + quality narrow PATO:0000599 @@ -9045,6 +9115,7 @@ Association is weaker than correlation or proportionality. These relations may b A width which is relatively large. + quality broad wide @@ -9147,6 +9218,7 @@ Association is weaker than correlation or proportionality. These relations may b A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view. + quality blocked PATO:0000608 @@ -9186,6 +9258,7 @@ Association is weaker than correlation or proportionality. These relations may b A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view. + quality PATO:0000610 @@ -9227,6 +9300,7 @@ Association is weaker than correlation or proportionality. These relations may b A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation. + quality PATO:0000613 @@ -9246,6 +9320,7 @@ Association is weaker than correlation or proportionality. These relations may b A pattern where all the repeated elements are oriented in the same direction. + quality PATO:0000614 @@ -9348,6 +9423,7 @@ Association is weaker than correlation or proportionality. These relations may b A positional quality inhering in a bearer by virtue of the bearer's being overfilled. + quality PATO:0000619 @@ -9631,6 +9707,7 @@ Association is weaker than correlation or proportionality. These relations may b A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled. + quality PATO:0000633 @@ -9750,6 +9827,7 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process. + degeneration quality PATO:0000639 @@ -9804,6 +9882,7 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity. + fused fused to quality @@ -9850,6 +9929,7 @@ Association is weaker than correlation or proportionality. These relations may b A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells. + PATO:0000943 hyperplasia quality @@ -9874,6 +9954,7 @@ Association is weaker than correlation or proportionality. These relations may b A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue. + PATO:0000942 hypoplasia quality @@ -9978,6 +10059,7 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity. + unfused quality PATO:0000651 @@ -10142,6 +10224,7 @@ Association is weaker than correlation or proportionality. These relations may b A color brightness which is relatively high. + light quality PATO:0000665 @@ -10402,6 +10485,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase. + quality PATO:0000688 @@ -10421,6 +10505,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent. + PATO:0000429 uninterrupted quality @@ -10442,6 +10527,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions. + PATO:0000426 interrupted quality @@ -10528,6 +10614,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase. + quality PATO:0000695 @@ -10591,6 +10678,7 @@ Association is weaker than correlation or proportionality. These relations may b A texture quality inhering in a bearer by virtue of the bearer's irregular surface. + PATO:0001616 coarse quality @@ -10613,6 +10701,7 @@ Association is weaker than correlation or proportionality. These relations may b A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities. + quality PATO:0000701 @@ -10678,6 +10767,7 @@ Association is weaker than correlation or proportionality. These relations may b A threshold which is relatively high. + PATO:0000709 high threshold quality @@ -10712,6 +10802,7 @@ Association is weaker than correlation or proportionality. These relations may b A threshold which is relatively low. + PATO:0000707 low threshold quality @@ -11279,6 +11370,7 @@ Association is weaker than correlation or proportionality. These relations may b A balance quality inhering in a bearer by virtue of the bearer's having balance. + quality PATO:0000757 @@ -11298,6 +11390,7 @@ Association is weaker than correlation or proportionality. These relations may b A balance quality inhering in a bearer by virtue of the bearer's lacking balance. + quality PATO:0000758 @@ -11344,6 +11437,7 @@ Association is weaker than correlation or proportionality. These relations may b A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity. + hyperactive quality PATO:0000760 @@ -11365,6 +11459,7 @@ Association is weaker than correlation or proportionality. These relations may b A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity. + hypoactive quality PATO:0000761 @@ -11513,6 +11608,7 @@ Association is weaker than correlation or proportionality. These relations may b A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement. + quality PATO:0000769 @@ -11533,6 +11629,7 @@ Association is weaker than correlation or proportionality. These relations may b A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement. + quality PATO:0000770 @@ -12872,6 +12969,7 @@ Association is weaker than correlation or proportionality. These relations may b A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction. + quality PATO:0000888 @@ -12904,6 +13002,7 @@ Association is weaker than correlation or proportionality. These relations may b A male fertility quality inhering in a male by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + quality male infertile PATO:0000890 @@ -12925,6 +13024,7 @@ Association is weaker than correlation or proportionality. These relations may b A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. + quality PATO:0000891 @@ -12945,6 +13045,7 @@ Association is weaker than correlation or proportionality. These relations may b A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + quality female infertile PATO:0000892 @@ -13169,6 +13270,7 @@ Association is weaker than correlation or proportionality. These relations may b A rate which is relatively low. + slow rate quality PATO:0000911 @@ -13191,6 +13293,7 @@ Association is weaker than correlation or proportionality. These relations may b A rate which is relatively high. + fast rate high rate quality @@ -13526,6 +13629,7 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's lacking organisation. + quality PATO:0000937 @@ -13546,6 +13650,7 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation. + quality PATO:0000938 @@ -13864,6 +13969,7 @@ Association is weaker than correlation or proportionality. These relations may b A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. + quality PATO:0000955 @@ -13884,6 +13990,7 @@ Association is weaker than correlation or proportionality. These relations may b A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + quality PATO:0000956 @@ -13978,6 +14085,7 @@ Association is weaker than correlation or proportionality. These relations may b A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy. + non-transparent quality clouding @@ -14001,6 +14109,7 @@ Association is weaker than correlation or proportionality. These relations may b A optical quality inhering in a bearer by virtue of the bearer's lacking opacity. + clear hyaline quality @@ -14266,6 +14375,7 @@ Association is weaker than correlation or proportionality. These relations may b A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + quality porous PATO:0000982 @@ -14287,6 +14397,7 @@ Association is weaker than correlation or proportionality. These relations may b A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + quality PATO:0000983 @@ -14308,6 +14419,7 @@ Association is weaker than correlation or proportionality. These relations may b A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices. + quality PATO:0000984 @@ -14328,6 +14440,7 @@ Association is weaker than correlation or proportionality. These relations may b A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices. + quality PATO:0000985 @@ -15145,6 +15258,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in an entity by virtue of the bearer's propensity to resist an external stimulus. + susceptibility quality PATO:0001043 @@ -15189,6 +15303,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus. + resistance quality PATO:0001046 @@ -16413,6 +16528,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus. + susceptible quality PATO:0001152 @@ -16435,6 +16551,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus. + insusceptible quality PATO:0001153 @@ -16457,6 +16574,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width. + quality PATO:0001154 @@ -16572,6 +16690,7 @@ Association is weaker than correlation or proportionality. These relations may b A concentration which is higher relative to the normal or average. + high concentration quality PATO:0001162 @@ -16594,6 +16713,7 @@ Association is weaker than correlation or proportionality. These relations may b A concentration which is lower relative to the normal or average. + low concentration quality PATO:0001163 @@ -16658,6 +16778,7 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired. + quality PATO:0001167 @@ -16677,6 +16798,7 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled. + quality PATO:0001168 @@ -16718,6 +16840,7 @@ Association is weaker than correlation or proportionality. These relations may b An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way. + quality PATO:0001171 @@ -16739,6 +16862,7 @@ Association is weaker than correlation or proportionality. These relations may b An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way. + quality PATO:0001172 @@ -17041,6 +17165,7 @@ Association is weaker than correlation or proportionality. These relations may b A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent. + hyperresponsive increased responsivity quality @@ -17087,6 +17212,7 @@ Association is weaker than correlation or proportionality. These relations may b A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent. + decreased responsivity hyporesponsive quality @@ -17291,6 +17417,7 @@ Association is weaker than correlation or proportionality. These relations may b A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex. + serrate quality PATO:0001206 @@ -17541,6 +17668,7 @@ Association is weaker than correlation or proportionality. These relations may b A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change. + variable quality PATO:0001227 @@ -17573,6 +17701,7 @@ Association is weaker than correlation or proportionality. These relations may b A color saturation which is of high purity. + bright quality vivid @@ -17636,6 +17765,7 @@ Association is weaker than correlation or proportionality. These relations may b A spatial quality inhering in a bearer by virtue of the bearer's being located toward the back or upper surface of an organism relative to another entity. + dorsal posterior_to (human torso) superior_to (human head) @@ -17659,6 +17789,7 @@ Association is weaker than correlation or proportionality. These relations may b A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity. + distal quality PATO:0001234 @@ -19034,6 +19165,7 @@ Association is weaker than correlation or proportionality. These relations may b A temperature which is relatively high. + PATO:0000678 high temperature hot @@ -19057,6 +19189,7 @@ Association is weaker than correlation or proportionality. These relations may b A temperature which is relatively low. + PATO:0000677 cold low temperature @@ -19080,6 +19213,7 @@ Association is weaker than correlation or proportionality. These relations may b A variability of temperature which is relatively low. + low variability of temperature quality PATO:0001307 @@ -19101,6 +19235,7 @@ Association is weaker than correlation or proportionality. These relations may b A variability of temperature which is relatively high. + high variability of temperature quality PATO:0001308 @@ -19165,6 +19300,7 @@ Association is weaker than correlation or proportionality. These relations may b A duration of temperature which is lesser relative to the normal or average enduring or continuing in time. + quality PATO:0001311 @@ -19185,6 +19321,7 @@ Association is weaker than correlation or proportionality. These relations may b A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time. + high duration of temperature quality PATO:0001312 @@ -19205,6 +19342,7 @@ Association is weaker than correlation or proportionality. These relations may b A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature. + quality PATO:0001313 @@ -19224,6 +19362,7 @@ Association is weaker than correlation or proportionality. These relations may b A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature. + quality PATO:0001314 @@ -19301,6 +19440,7 @@ Association is weaker than correlation or proportionality. These relations may b A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli. + quality PATO:0001318 @@ -19322,6 +19462,7 @@ Association is weaker than correlation or proportionality. These relations may b A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli. + quality PATO:0001319 @@ -20051,6 +20192,7 @@ Association is weaker than correlation or proportionality. These relations may b A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere. + quality PATO:0001355 @@ -20195,6 +20337,7 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed. + quality PATO:0001362 @@ -21177,6 +21320,7 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's having distinct structure. + quality PATO:0001411 @@ -21196,6 +21340,7 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure. + quality PATO:0001412 @@ -21275,6 +21420,7 @@ Association is weaker than correlation or proportionality. These relations may b A duration which has regular start and/or end times. + quality PATO:0001416 @@ -21294,6 +21440,7 @@ Association is weaker than correlation or proportionality. These relations may b A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times. + quality PATO:0001417 @@ -22057,6 +22204,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's dependence on oxygen. + quality PATO:0001455 @@ -22077,6 +22225,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's independence on oxygen. + quality PATO:0001456 @@ -22140,6 +22289,7 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen. + quality PATO:0001459 @@ -22160,6 +22310,7 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen. + quality PATO:0001460 @@ -22401,6 +22552,7 @@ Association is weaker than correlation or proportionality. These relations may b A depth which is relatively low. + PATO:0001692 low depth shallow @@ -22465,6 +22617,7 @@ Association is weaker than correlation or proportionality. These relations may b A position which is relatively high. + quality high position PATO:0001475 @@ -22486,6 +22639,7 @@ Association is weaker than correlation or proportionality. These relations may b A positional which is relatively low. + quality low position PATO:0001476 @@ -22666,6 +22820,7 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together. + PATO:0001840 compact compressed @@ -22814,6 +22969,7 @@ Association is weaker than correlation or proportionality. These relations may b + quality PATO:0001493 @@ -22827,6 +22983,7 @@ Association is weaker than correlation or proportionality. These relations may b + quality PATO:0001494 @@ -22963,6 +23120,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development. + quality underdeveloped PATO:0001501 @@ -23138,6 +23296,7 @@ Association is weaker than correlation or proportionality. These relations may b A functionality quality held by the bearer when the latter is able to perform a regular function(s). + quality PATO:0001510 @@ -23158,6 +23317,7 @@ Association is weaker than correlation or proportionality. These relations may b A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s). + PATO:0001640 disfunctional functional failure @@ -23672,6 +23832,7 @@ Association is weaker than correlation or proportionality. These relations may b A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid. + soluble quality PATO:0001537 @@ -23694,6 +23855,7 @@ Association is weaker than correlation or proportionality. These relations may b A solubility quality inhering in a substance by virtue of the bearer's inability of a substance to dissolve in a liquid. + insoluble quality PATO:0001538 @@ -23814,6 +23976,7 @@ Association is weaker than correlation or proportionality. These relations may b A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking. + bendy quality PATO:0001544 @@ -23835,6 +23998,7 @@ Association is weaker than correlation or proportionality. These relations may b A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking. + stiff quality stiffness @@ -23919,6 +24083,7 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity toward an external stimulus which is higher than normal/average. + high sensitivity toward increased sensitivity quality @@ -23943,6 +24108,7 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity toward an external stimulus which is lower than normal/average. + decreased sensitivity low sensitivity toward quality @@ -23967,6 +24133,7 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity of a process which is higher than normal or average. + high sensitivity of occurrent increased sensitivity of occurrent quality @@ -23990,6 +24157,7 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity of a process which is lower than normal or average. + decreased sensitivity of occurrent low sensitivity of occurrent quality @@ -24013,6 +24181,7 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity of occurrent to oxygen which is higher than normal or average. + high sensitivity of occurrent to oxygen quality PATO:0001553 @@ -24035,6 +24204,7 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity of a process to oxygen which is lower than normal or average. + low sensitivity of occurrent to oxygen quality PATO:0001554 @@ -24189,6 +24359,7 @@ Association is weaker than correlation or proportionality. These relations may b A mass which is lower than normal or average. + PATO:0000579 low mass small mass @@ -24212,6 +24383,7 @@ Association is weaker than correlation or proportionality. These relations may b A mass which is higher than normal or average. + PATO:0000578 high mass large mass @@ -24264,6 +24436,7 @@ Association is weaker than correlation or proportionality. These relations may b A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up. + PATO:0001513 diffuse scattered @@ -24287,6 +24460,7 @@ Association is weaker than correlation or proportionality. These relations may b A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up. + quality PATO:0001567 @@ -24417,6 +24591,7 @@ Association is weaker than correlation or proportionality. These relations may b A pressure which is relatively low. + low pressure quality PATO:0001575 @@ -24438,6 +24613,7 @@ Association is weaker than correlation or proportionality. These relations may b A pressure which is relatively high. + high pressure quality PATO:0001576 @@ -24459,6 +24635,7 @@ Association is weaker than correlation or proportionality. These relations may b A permeability which is relatively high. + high permeability quality PATO:0001577 @@ -24481,6 +24658,7 @@ Association is weaker than correlation or proportionality. These relations may b A permeability which is relatively low. + low permeability quality PATO:0001578 @@ -24524,6 +24702,7 @@ Association is weaker than correlation or proportionality. These relations may b A contractility which is relatively high. + high contractility quality PATO:0001580 @@ -24546,6 +24725,7 @@ Association is weaker than correlation or proportionality. These relations may b A contractility which is relatively low. + low contractility quality PATO:0001581 @@ -24587,6 +24767,7 @@ Association is weaker than correlation or proportionality. These relations may b A variability which is relatively low. + low variability quality PATO:0001583 @@ -24608,6 +24789,7 @@ Association is weaker than correlation or proportionality. These relations may b A variability which is relatively high. + high variability quality PATO:0001584 @@ -24676,6 +24858,7 @@ Association is weaker than correlation or proportionality. These relations may b A variability of rate which is relatively high. + high variability of rate quality PATO:0001587 @@ -24697,6 +24880,7 @@ Association is weaker than correlation or proportionality. These relations may b A variability of rate which is relatively low. + low variability of rate quality PATO:0001588 @@ -24778,6 +24962,7 @@ Association is weaker than correlation or proportionality. These relations may b A curvature which is relatively high. + quality PATO:0001592 @@ -24798,6 +24983,7 @@ Association is weaker than correlation or proportionality. These relations may b A curvature which is relatively low. + quality PATO:0001593 @@ -24857,6 +25043,7 @@ Association is weaker than correlation or proportionality. These relations may b A depth quality which is relatively high. + PATO:0001666 deep quality @@ -25003,6 +25190,7 @@ Association is weaker than correlation or proportionality. These relations may b A life span which is relatively high. + high life span quality PATO:0001603 @@ -25023,6 +25211,7 @@ Association is weaker than correlation or proportionality. These relations may b A life span which is relatively low. + low life span quality PATO:0001604 @@ -25178,6 +25367,7 @@ Association is weaker than correlation or proportionality. These relations may b A variability of color which is relatively high. + high variability of color quality PATO:0001612 @@ -25199,6 +25389,7 @@ Association is weaker than correlation or proportionality. These relations may b A variability of color which is relatively low. + low variability of color quality PATO:0001613 @@ -25219,6 +25410,7 @@ Association is weaker than correlation or proportionality. These relations may b A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color. + quality PATO:0001614 @@ -25238,6 +25430,7 @@ Association is weaker than correlation or proportionality. These relations may b A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour. + quality PATO:0001615 @@ -25289,6 +25482,7 @@ Association is weaker than correlation or proportionality. These relations may b A tonicity which is relatively high. + high tonicity quality PATO:0001618 @@ -25311,6 +25505,7 @@ Association is weaker than correlation or proportionality. These relations may b A tonicity which is relatively low. + low tonicity quality PATO:0001619 @@ -25353,6 +25548,7 @@ Association is weaker than correlation or proportionality. These relations may b A turgor which is relatively low. + low turgor quality PATO:0001621 @@ -25375,6 +25571,7 @@ Association is weaker than correlation or proportionality. These relations may b A turgor which is relatively high. + high turgor quality PATO:0001622 @@ -25419,6 +25616,7 @@ Association is weaker than correlation or proportionality. These relations may b A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s). + PATO:0001556 PATO:0001568 PATO:0001641 @@ -25451,6 +25649,7 @@ Association is weaker than correlation or proportionality. These relations may b A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s). + high functionality quality PATO:0001625 @@ -25493,6 +25692,7 @@ Association is weaker than correlation or proportionality. These relations may b A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality. + quality adequate PATO:0001627 @@ -25513,6 +25713,7 @@ Association is weaker than correlation or proportionality. These relations may b A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality. + quality inadequate PATO:0001628 @@ -25651,6 +25852,7 @@ Association is weaker than correlation or proportionality. These relations may b A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being essential or indispensable. + quality PATO:0001635 @@ -25670,6 +25872,7 @@ Association is weaker than correlation or proportionality. These relations may b A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable. + quality PATO:0001636 @@ -25708,6 +25911,7 @@ Association is weaker than correlation or proportionality. These relations may b A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable. + quality PATO:0001638 @@ -25727,6 +25931,7 @@ Association is weaker than correlation or proportionality. These relations may b A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable. + quality PATO:0001639 @@ -25898,6 +26103,7 @@ Association is weaker than correlation or proportionality. These relations may b A resistance to a stimulus which is relatively high. + high resistance to increased resistance quality @@ -25922,6 +26128,7 @@ Association is weaker than correlation or proportionality. These relations may b A resistance to a stimulus which is relatively low. + decreased resistance low resistance to quality @@ -25971,6 +26178,7 @@ Association is weaker than correlation or proportionality. These relations may b An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity. + aligned quality aligned to @@ -25993,6 +26201,7 @@ Association is weaker than correlation or proportionality. These relations may b An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity. + misaligned unaligned with quality @@ -26037,6 +26246,7 @@ Association is weaker than correlation or proportionality. These relations may b A osmolarity which is relatively low. + low osmolarity quality PATO:0001656 @@ -26059,6 +26269,7 @@ Association is weaker than correlation or proportionality. These relations may b A osmolarity which is relatively high. + high osmolarity quality PATO:0001657 @@ -26183,6 +26394,7 @@ Association is weaker than correlation or proportionality. These relations may b A solubility which is relatively high. + high solubility quality PATO:0001663 @@ -26206,6 +26418,7 @@ Association is weaker than correlation or proportionality. These relations may b A solubility which is relatively low. + low solubility quality PATO:0001664 @@ -26307,6 +26520,7 @@ Association is weaker than correlation or proportionality. These relations may b A susceptibility toward an external stimulus which is higher than normal/average. + high susceptibility toward increased susceptibility quality @@ -26331,6 +26545,7 @@ Association is weaker than correlation or proportionality. These relations may b A susceptibility toward an external stimulus which is lower than normal/average. + decreased susceptibility low susceptibility toward quality @@ -26355,6 +26570,7 @@ Association is weaker than correlation or proportionality. These relations may b A distribution which is relatively high. + high distribution quality PATO:0001671 @@ -26376,6 +26592,7 @@ Association is weaker than correlation or proportionality. These relations may b A distribution which is relatively low. + low distribution quality PATO:0001672 @@ -26439,6 +26656,7 @@ Association is weaker than correlation or proportionality. These relations may b An efficiency which is relatively low. + low efficiency quality PATO:0001675 @@ -26460,6 +26678,7 @@ Association is weaker than correlation or proportionality. These relations may b An efficiency which is relatively high. + high efficiency quality PATO:0001676 @@ -26481,6 +26700,7 @@ Association is weaker than correlation or proportionality. These relations may b An efficiency quality inhering in a bearer by virtue of the bearer's lacking efficiency. + quality PATO:0001677 @@ -26500,6 +26720,7 @@ Association is weaker than correlation or proportionality. These relations may b An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency. + quality PATO:0001678 @@ -26602,6 +26823,7 @@ Association is weaker than correlation or proportionality. These relations may b A magnetism which is relatively high. + high magnetism quality PATO:0001683 @@ -26624,6 +26846,7 @@ Association is weaker than correlation or proportionality. These relations may b A magnetism which is relatively low. + low magnetism quality PATO:0001684 @@ -26646,6 +26869,7 @@ Association is weaker than correlation or proportionality. These relations may b A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism. + quality PATO:0001685 @@ -26666,6 +26890,7 @@ Association is weaker than correlation or proportionality. These relations may b A magnetic quality inhering in a bearer by virtue of the bearer's inability to exert magnitism. + quality PATO:0001686 @@ -26706,6 +26931,7 @@ Association is weaker than correlation or proportionality. These relations may b An elevation which is relatively high. + high elevation quality elevated @@ -26728,6 +26954,7 @@ Association is weaker than correlation or proportionality. These relations may b An elevation which is relatively low. + low elevation quality PATO:0001689 @@ -26749,6 +26976,7 @@ Association is weaker than correlation or proportionality. These relations may b A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted. + quality PATO:0001690 @@ -26770,6 +26998,7 @@ Association is weaker than correlation or proportionality. These relations may b A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted. + quality PATO:0001691 @@ -26802,6 +27031,7 @@ Association is weaker than correlation or proportionality. These relations may b A viscosity which relatively high. + high viscosity quality PATO:0001693 @@ -26824,6 +27054,7 @@ Association is weaker than correlation or proportionality. These relations may b A viscosity which relatively low. + low viscosity quality PATO:0001694 @@ -26846,6 +27077,7 @@ Association is weaker than correlation or proportionality. These relations may b A fecundity which is relatively high. + high fecundity quality PATO:0001695 @@ -26868,6 +27100,7 @@ Association is weaker than correlation or proportionality. These relations may b A fecundity which is relatively low. + low fecundity quality PATO:0001696 @@ -26890,6 +27123,7 @@ Association is weaker than correlation or proportionality. These relations may b A photosensitivity which is relatively low. + low photosensitivity quality PATO:0001697 @@ -26913,6 +27147,7 @@ Association is weaker than correlation or proportionality. These relations may b A photosensitivity which is relatively high. + high photosensitivity quality PATO:0001698 @@ -26935,6 +27170,7 @@ Association is weaker than correlation or proportionality. These relations may b A sleep pattern which has regular start and/or end times. + quality PATO:0001699 @@ -26954,6 +27190,7 @@ Association is weaker than correlation or proportionality. These relations may b A sleep pattern which has irregular start and/or end times. + quality PATO:0001700 @@ -26973,6 +27210,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development. + quality PATO:0001701 @@ -27073,6 +27311,7 @@ Association is weaker than correlation or proportionality. These relations may b A behavioral quality inhering in a bearer by virtue of the bearer's disposition to lack activity. + quality PATO:0001706 @@ -27093,6 +27332,7 @@ Association is weaker than correlation or proportionality. These relations may b A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity. + quality PATO:0001707 @@ -27193,6 +27433,7 @@ Association is weaker than correlation or proportionality. These relations may b A perimeter which is relatively high. + quality PATO:0001712 @@ -27213,6 +27454,7 @@ Association is weaker than correlation or proportionality. These relations may b A perimeter which is relatively low. + quality PATO:0001713 @@ -27233,6 +27475,7 @@ Association is weaker than correlation or proportionality. These relations may b A diameter which is relatively large. + quality PATO:0001714 @@ -27253,6 +27496,7 @@ Association is weaker than correlation or proportionality. These relations may b A diameter which is relatively small. + quality PATO:0001715 @@ -27272,6 +27516,7 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking. + quality resilient strong @@ -27405,6 +27650,7 @@ Association is weaker than correlation or proportionality. These relations may b A female receptivity which is relatively high. + high female receptivity quality PATO:0001723 @@ -27427,6 +27673,7 @@ Association is weaker than correlation or proportionality. These relations may b A female receptivity which is relatively low. + low female receptivity quality PATO:0001724 @@ -27449,6 +27696,7 @@ Association is weaker than correlation or proportionality. These relations may b A male receptivity which is relatively high. + high male receptivity quality PATO:0001725 @@ -27471,6 +27719,7 @@ Association is weaker than correlation or proportionality. These relations may b A male receptivity which is relatively low. + low male receptivity quality PATO:0001726 @@ -27798,6 +28047,7 @@ Association is weaker than correlation or proportionality. These relations may b A radioactivity which is relatively low. + high radioactivity quality PATO:0001742 @@ -27819,6 +28069,7 @@ Association is weaker than correlation or proportionality. These relations may b A radioactivity which is relatively high. + low radioactivity quality PATO:0001743 @@ -27940,6 +28191,7 @@ Association is weaker than correlation or proportionality. These relations may b A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth. + hypoplastic growth pedomorphic growth quality @@ -27999,6 +28251,7 @@ Association is weaker than correlation or proportionality. These relations may b A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth. + hyperplastic growth quality PATO:0001752 @@ -28160,6 +28413,7 @@ Association is weaker than correlation or proportionality. These relations may b + quality PATO:0001760 @@ -28173,6 +28427,7 @@ Association is weaker than correlation or proportionality. These relations may b + quality PATO:0001761 @@ -28186,6 +28441,7 @@ Association is weaker than correlation or proportionality. These relations may b + quality PATO:0001762 @@ -28199,6 +28455,7 @@ Association is weaker than correlation or proportionality. These relations may b + quality PATO:0001763 @@ -28214,6 +28471,7 @@ Association is weaker than correlation or proportionality. These relations may b An age which is high relative to the normal or average. + high age quality PATO:0001764 @@ -28235,6 +28493,7 @@ Association is weaker than correlation or proportionality. These relations may b An age which is low relative to the normal or average. + low age quality PATO:0001765 @@ -28447,6 +28706,7 @@ Association is weaker than correlation or proportionality. These relations may b A flexibility which is relatively high. + high flexibility quality PATO:0001776 @@ -28469,6 +28729,7 @@ Association is weaker than correlation or proportionality. These relations may b A flexibility which is relatively low. + low flexibility quality PATO:0001777 @@ -28491,6 +28752,7 @@ Association is weaker than correlation or proportionality. These relations may b A strength which is relatively high. + high strength quality PATO:0001778 @@ -28512,6 +28774,7 @@ Association is weaker than correlation or proportionality. These relations may b A strength which is relatively low. + weak quality PATO:0001779 @@ -28573,6 +28836,7 @@ Association is weaker than correlation or proportionality. These relations may b An intensity which is relatively high. + high intensity quality PATO:0001782 @@ -28594,6 +28858,7 @@ Association is weaker than correlation or proportionality. These relations may b An intensity which is relatively low. + low intensity quality PATO:0001783 @@ -28706,6 +28971,7 @@ Association is weaker than correlation or proportionality. These relations may b A density which is higher relative to the normal or average. + high density quality PATO:0001788 @@ -28748,6 +29014,7 @@ Association is weaker than correlation or proportionality. These relations may b A density which is lower relative to the normal or average. + low density quality PATO:0001790 @@ -28851,6 +29118,7 @@ Association is weaker than correlation or proportionality. These relations may b A coiling which is relatively high. + high coiling quality PATO:0001795 @@ -28873,6 +29141,7 @@ Association is weaker than correlation or proportionality. These relations may b A coiling which is relatively low. + low coiling quality PATO:0001796 @@ -29090,6 +29359,7 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity to irradiation which is relatively low. + low sensitivity to irradiation quality PATO:0001807 @@ -29112,6 +29382,7 @@ Association is weaker than correlation or proportionality. These relations may b A sensitivity to irradiation which is relatively high. + high sensitivity to irradiation quality PATO:0001808 @@ -29276,6 +29547,7 @@ Association is weaker than correlation or proportionality. These relations may b A fatigability which is relatively high. + high fatigability quality PATO:0001816 @@ -29298,6 +29570,7 @@ Association is weaker than correlation or proportionality. These relations may b A fatigability which is relatively low. + low fatigability quality PATO:0001817 @@ -29319,6 +29592,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time. + quality PATO:0001818 @@ -29371,6 +29645,7 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's having no opening. + unperforated quality PATO:0001821 @@ -29414,6 +29689,7 @@ Association is weaker than correlation or proportionality. These relations may b A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid. + quality PATO:0001823 @@ -29434,6 +29710,7 @@ Association is weaker than correlation or proportionality. These relations may b A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid. + quality PATO:0001824 @@ -29455,6 +29732,7 @@ Association is weaker than correlation or proportionality. These relations may b A wetness quality that is relatively high. + quality PATO:0001825 @@ -29475,6 +29753,7 @@ Association is weaker than correlation or proportionality. These relations may b A wetness quality that is relatively low. + low wetness quality PATO:0001826 @@ -29553,6 +29832,7 @@ Association is weaker than correlation or proportionality. These relations may b A female fertility which is relatively low. + low female fertility quality PATO:0001830 @@ -29575,6 +29855,7 @@ Association is weaker than correlation or proportionality. These relations may b A female fertility which is relatively high. + high female fertility quality PATO:0001831 @@ -29597,6 +29878,7 @@ Association is weaker than correlation or proportionality. These relations may b A male fertility which is relatively high. + high male fertility quality PATO:0001832 @@ -29619,6 +29901,7 @@ Association is weaker than correlation or proportionality. These relations may b A male fertility which is relatively low. + low male fertility quality PATO:0001833 @@ -29641,6 +29924,7 @@ Association is weaker than correlation or proportionality. These relations may b A fertility which is relatively low. + low fertility quality PATO:0001834 @@ -29663,6 +29947,7 @@ Association is weaker than correlation or proportionality. These relations may b A fertility which is relatively high. + high fertility quality PATO:0001835 @@ -29715,6 +30000,7 @@ Association is weaker than correlation or proportionality. These relations may b A flow that is relatively low. + low flow quality PATO:0001838 @@ -29736,6 +30022,7 @@ Association is weaker than correlation or proportionality. These relations may b A fluid flow that is relatively high. + high flow quality PATO:0001839 @@ -29809,6 +30096,7 @@ Association is weaker than correlation or proportionality. These relations may b An acidity which is relatively low. + low acidity quality PATO:0001843 @@ -29830,6 +30118,7 @@ Association is weaker than correlation or proportionality. These relations may b An acidity which is relatively high. + high acidity quality PATO:0001844 @@ -30108,6 +30397,7 @@ Association is weaker than correlation or proportionality. These relations may b A shape quality in a bearer by virtue of the bearer's curving inward. + quality PATO:0001857 @@ -30148,6 +30438,7 @@ Association is weaker than correlation or proportionality. These relations may b A coordination which is relatively high. + high coordination quality PATO:0001859 @@ -30170,6 +30461,7 @@ Association is weaker than correlation or proportionality. These relations may b A coordination which is relatively low. + low coordination quality PATO:0001860 @@ -30192,6 +30484,7 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve. + fascicled quality PATO:0001861 @@ -30234,6 +30527,7 @@ Association is weaker than correlation or proportionality. These relations may b A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration. + quality PATO:0001863 @@ -30692,6 +30986,7 @@ Association is weaker than correlation or proportionality. These relations may b A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water. + quality PATO:0001884 @@ -30712,6 +31007,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water. + quality PATO:0001885 @@ -30732,6 +31028,7 @@ Association is weaker than correlation or proportionality. These relations may b A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water. + quality PATO:0001886 @@ -30752,6 +31049,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water. + quality PATO:0001887 @@ -30868,6 +31166,7 @@ Association is weaker than correlation or proportionality. These relations may b An odor quality of having decreased odor. + quality PATO:0001892 @@ -30888,6 +31187,7 @@ Association is weaker than correlation or proportionality. These relations may b An odor quality of having increased odor. + quality PATO:0001893 @@ -30939,6 +31239,7 @@ Association is weaker than correlation or proportionality. These relations may b A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. + quality PATO:0001896 @@ -30958,6 +31259,7 @@ Association is weaker than correlation or proportionality. These relations may b A structure quality inhering in a bearer by virtue of the bearer's having a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. + quality PATO:0001897 @@ -30979,6 +31281,7 @@ Association is weaker than correlation or proportionality. These relations may b A circumference which is relatively high. + quality PATO:0001898 @@ -30999,6 +31302,7 @@ Association is weaker than correlation or proportionality. These relations may b A circumference which is relatively low. + quality PATO:0001899 @@ -31018,6 +31322,7 @@ Association is weaker than correlation or proportionality. These relations may b A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north. + quality PATO:0001900 @@ -31037,6 +31342,7 @@ Association is weaker than correlation or proportionality. These relations may b A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south. + quality PATO:0001901 @@ -31524,6 +31830,7 @@ Association is weaker than correlation or proportionality. These relations may b A fluorescence which is higher than normal. + high fluorescence quality PATO:0001926 @@ -31545,6 +31852,7 @@ Association is weaker than correlation or proportionality. These relations may b A fluorescence which is lower than normal. + low fluorescence quality PATO:0001927 @@ -31611,6 +31919,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape. + quality PATO:0001930 @@ -31630,6 +31939,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape. + quality PATO:0001931 @@ -32140,6 +32450,7 @@ Association is weaker than correlation or proportionality. These relations may b A variability of size which is relatively low. + low variability of size quality PATO:0001957 @@ -32161,6 +32472,7 @@ Association is weaker than correlation or proportionality. These relations may b A variability of size which is relatively high. + high variability of size quality PATO:0001958 @@ -32181,6 +32493,7 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated. + quality PATO:0001959 @@ -32487,6 +32800,7 @@ Association is weaker than correlation or proportionality. These relations may b A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex. + quality PATO:0001975 @@ -32906,6 +33220,7 @@ Association is weaker than correlation or proportionality. These relations may b An amount which is relatively low. + PATO:0000419 PATO:0000468 decreased number @@ -33001,6 +33316,7 @@ Association is weaker than correlation or proportionality. These relations may b The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. + PATO:0001569 decreased number of has decreased number of @@ -33026,6 +33342,7 @@ Association is weaker than correlation or proportionality. These relations may b The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. + PATO:0001560 has extra parts of has increased number of @@ -33137,6 +33454,7 @@ Association is weaker than correlation or proportionality. These relations may b A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave. + Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png quality PATO:0002007 @@ -33164,6 +33482,7 @@ Association is weaker than correlation or proportionality. These relations may b A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave. + Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png quality PATO:0002008 @@ -33322,6 +33641,7 @@ Association is weaker than correlation or proportionality. These relations may b + high magnitude quality PATO:0002017 @@ -33334,6 +33654,7 @@ Association is weaker than correlation or proportionality. These relations may b + low magnitude quality PATO:0002018 @@ -33484,6 +33805,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time. + george gkoutos 2008-12-18T12:49:19Z quality @@ -33531,6 +33853,7 @@ Association is weaker than correlation or proportionality. These relations may b An osmolality which is relatively low. + george 2009-01-27T10:55:33Z low osmolality @@ -33555,6 +33878,7 @@ Association is weaker than correlation or proportionality. These relations may b An osmolality which is relatively high. + george 2009-01-27T10:56:19Z high osmolality @@ -33755,6 +34079,7 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer whose structure which does not deteriorate. + george 2009-02-03T11:14:54Z not degenerate @@ -33777,6 +34102,7 @@ Association is weaker than correlation or proportionality. These relations may b A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces. + quality PATO:0002039 @@ -33796,6 +34122,7 @@ Association is weaker than correlation or proportionality. These relations may b A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface. + Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx quality PATO:0002040 @@ -33837,6 +34164,7 @@ Association is weaker than correlation or proportionality. These relations may b An anterior-posterior diameter quality which is relatively small. + low anterior-posterior diameter quality PATO:0002042 @@ -33858,6 +34186,7 @@ Association is weaker than correlation or proportionality. These relations may b An anterior-posterior diameter quality which is relatively large. + high anterior-posterior diameter quality PATO:0002043 @@ -34039,6 +34368,7 @@ Association is weaker than correlation or proportionality. These relations may b An occurrence which is relatively high. + George Gkoutos 2009-03-26T11:10:11Z increased incidence @@ -34061,6 +34391,7 @@ Association is weaker than correlation or proportionality. These relations may b An occurrence which is relatively low. + George Gkoutos 2009-03-26T11:12:35Z decreased incidence @@ -34127,6 +34458,7 @@ Association is weaker than correlation or proportionality. These relations may b A fragility which is relatively high. + George Gkoutos 2009-03-26T04:01:37Z quality @@ -34150,6 +34482,7 @@ Association is weaker than correlation or proportionality. These relations may b A fragility which is relatively low. + George Gkoutos 2009-03-26T04:02:14Z quality @@ -34173,6 +34506,7 @@ Association is weaker than correlation or proportionality. These relations may b An area which is relatively high. + George Gkoutos 2009-03-30T04:11:43Z quality @@ -34195,6 +34529,7 @@ Association is weaker than correlation or proportionality. These relations may b An area which is relatively low. + George Gkoutos 2009-03-30T04:12:11Z quality @@ -34394,6 +34729,7 @@ Association is weaker than correlation or proportionality. These relations may b A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration. + George Gkoutos 2009-07-01T02:31:53Z quality @@ -34416,6 +34752,7 @@ Association is weaker than correlation or proportionality. These relations may b A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration. + George Gkoutos 2009-07-01T02:33:41Z quality @@ -34463,6 +34800,7 @@ Association is weaker than correlation or proportionality. These relations may b An affinity which is relatively high. + George Gkoutos 2009-09-18T01:29:42Z quality @@ -34487,6 +34825,7 @@ Association is weaker than correlation or proportionality. These relations may b An affinity which is relatively low. + George Gkoutos 2009-09-18T01:30:11Z quality @@ -34535,6 +34874,7 @@ Association is weaker than correlation or proportionality. These relations may b An avidity which is relatively high. + George Gkoutos 2009-09-18T01:45:56Z quality @@ -34559,6 +34899,7 @@ Association is weaker than correlation or proportionality. These relations may b An avidity which is relatively low. + George Gkoutos 2009-09-18T01:45:59Z quality @@ -35068,6 +35409,7 @@ Association is weaker than correlation or proportionality. These relations may b A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type. + george 2009-10-05T12:58:54Z quality @@ -35090,6 +35432,7 @@ Association is weaker than correlation or proportionality. These relations may b A cellular quality inhering in a bearer by virtue of having not yet acquired a special structure of function. + george 2009-10-05T12:59:21Z quality @@ -35359,6 +35702,7 @@ Association is weaker than correlation or proportionality. These relations may b A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes. + george 2009-10-05T03:37:05Z PATO:0000649 @@ -35963,6 +36307,7 @@ Association is weaker than correlation or proportionality. These relations may b A physical quality inhering in a bearer by virtue of the bearer being suitable for use as food. + george 2009-10-26T01:21:34Z quality @@ -35986,6 +36331,7 @@ Association is weaker than correlation or proportionality. These relations may b A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food. + george 2009-10-26T01:22:27Z quality @@ -36059,6 +36405,7 @@ Association is weaker than correlation or proportionality. These relations may b A radiopacity that is relatively high. + george 2009-10-30T03:30:39Z quality @@ -36082,6 +36429,7 @@ Association is weaker than correlation or proportionality. These relations may b A radiopacity that is relatively low. + george 2009-10-30T03:31:31Z quality @@ -36128,6 +36476,7 @@ Association is weaker than correlation or proportionality. These relations may b A virulence that is relatively low. + george 2009-10-30T05:05:02Z attenuated @@ -36151,6 +36500,7 @@ Association is weaker than correlation or proportionality. These relations may b A virulence that is relatively high. + george 2009-10-30T05:13:10Z quality @@ -37052,6 +37402,7 @@ Association is weaker than correlation or proportionality. These relations may b A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. + George Gkoutos 2010-03-10T03:25:59Z quality @@ -37073,6 +37424,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic. + George Gkoutos 2010-03-10T03:26:41Z quality @@ -37140,6 +37492,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge. + George Gkoutos 2010-03-10T03:30:06Z quality @@ -37161,6 +37514,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge. + George Gkoutos 2010-03-10T03:30:39Z quality @@ -37694,6 +38048,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group. + george 2010-07-09T01:50:14Z quality @@ -37716,6 +38071,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups. + george 2010-07-09T01:51:52Z hyperphosphorylated @@ -37739,6 +38095,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully. + george 2010-07-09T01:54:22Z hypophosporylated @@ -38241,6 +38598,7 @@ Association is weaker than correlation or proportionality. These relations may b A force which relative high. + george 2010-08-04T11:12:20Z increased force amplitude @@ -38264,6 +38622,7 @@ Association is weaker than correlation or proportionality. These relations may b A force which is relative low. + george 2010-08-04T11:13:13Z decreased force amplitude @@ -38315,6 +38674,7 @@ Association is weaker than correlation or proportionality. These relations may b A degree of pigmentation quality inhering in a bearer by virtue of the bearer's having substances produced by living organisms that have a color resulting from selective color absorption. + george 2010-08-09T04:16:49Z quality @@ -38337,6 +38697,7 @@ Association is weaker than correlation or proportionality. These relations may b A degree of pigmentation quality inhering in a bearer by virtue of the bearer's lacking substances produced by living organisms that have a color resulting from selective color absorption. + george 2010-08-09T04:17:04Z depigmented @@ -38361,6 +38722,7 @@ Association is weaker than correlation or proportionality. These relations may b A degree of pigmentation quality that is relatively high. + george 2010-08-09T04:17:19Z hyperpigmented @@ -38385,6 +38747,7 @@ Association is weaker than correlation or proportionality. These relations may b A degree of pigmentation quality that is relative low. + george 2010-08-09T04:17:37Z hypopigmented @@ -38654,6 +39017,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group. + george 2010-09-16T09:04:21Z quality @@ -38797,6 +39161,7 @@ Association is weaker than correlation or proportionality. These relations may b An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner. + george 2010-10-26T02:00:20Z accumulated @@ -38820,6 +39185,7 @@ Association is weaker than correlation or proportionality. These relations may b An accumulation which is relative low. + george 2010-10-26T02:04:45Z quality @@ -39053,6 +39419,7 @@ Association is weaker than correlation or proportionality. These relations may b A mobility which is relative high. + george 2011-03-09T09:16:03Z quality @@ -39075,6 +39442,7 @@ Association is weaker than correlation or proportionality. These relations may b A mobility which is relative low. + george 2011-03-09T09:16:47Z quality @@ -39118,6 +39486,7 @@ Association is weaker than correlation or proportionality. These relations may b Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity. + george 2011-03-10T09:07:57Z quality @@ -39139,6 +39508,7 @@ Association is weaker than correlation or proportionality. These relations may b Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity. + george 2011-03-10T09:08:37Z quality @@ -39161,6 +39531,7 @@ Association is weaker than correlation or proportionality. These relations may b An elasticity which is relatively high. + George Gkoutos 2011-03-30T11:50:21Z quality @@ -39183,6 +39554,7 @@ Association is weaker than correlation or proportionality. These relations may b An elasticity which is relatively low. + George Gkoutos 2011-03-30T11:50:39Z quality @@ -39368,6 +39740,7 @@ Association is weaker than correlation or proportionality. These relations may b A cellular motility which is lower relative to the normal or average. + quality PATO:0002297 @@ -39388,6 +39761,7 @@ Association is weaker than correlation or proportionality. These relations may b A cellular motility which is higher relative to the normal or average. + quality PATO:0002298 @@ -39437,6 +39811,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality that has a value that is increased compared to normal or average. + George Gkoutos 2011-06-16T06:39:43Z quality @@ -39463,6 +39838,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality that has a value that is decreased compared to normal or average. + George Gkoutos 2011-06-16T06:40:15Z quality @@ -39484,6 +39860,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a process that has a value that is decreased compared to normal or average. + George Gkoutos 2011-06-16T06:50:59Z quality @@ -39505,6 +39882,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality of an object that has a value that is decreased compared to normal or average. + George Gkoutos 2011-06-16T06:51:54Z quality @@ -39526,6 +39904,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a process that has a value that is increased compared to normal or average. + George Gkoutos 2011-06-16T06:53:08Z quality @@ -39547,6 +39926,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality of an object that has a value that is increased compared to normal or average. + George Gkoutos 2011-06-16T06:54:01Z quality @@ -39903,6 +40283,7 @@ Association is weaker than correlation or proportionality. These relations may b + George Gkoutos 2011-10-12T12:50:59Z quality @@ -39916,6 +40297,7 @@ Association is weaker than correlation or proportionality. These relations may b + George Gkoutos 2011-10-12T12:51:19Z quality @@ -40031,6 +40413,7 @@ Association is weaker than correlation or proportionality. These relations may b An angle which is relatively high. + George Gkoutos 2011-11-23T12:06:38Z quality @@ -40054,6 +40437,7 @@ Association is weaker than correlation or proportionality. These relations may b An angle which is relatively low. + George Gkoutos 2011-11-23T12:06:54Z quality @@ -40118,6 +40502,7 @@ Association is weaker than correlation or proportionality. These relations may b A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact. + gkoutos 2012-01-31T12:28:16Z quality @@ -40140,6 +40525,7 @@ Association is weaker than correlation or proportionality. These relations may b A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact. + gkoutos 2012-01-31T12:28:57Z quality @@ -40163,6 +40549,7 @@ Association is weaker than correlation or proportionality. These relations may b A adhesivity which is relatively high. + gkoutos 2012-01-31T12:32:43Z quality @@ -40185,6 +40572,7 @@ Association is weaker than correlation or proportionality. These relations may b A adhesivity which is relatively low. + gkoutos 2012-01-31T12:42:22Z quality @@ -40604,6 +40992,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality of an physical object that is currently realizing one of its functions. + gkoutos 2012-01-31T04:52:04Z quality @@ -40625,6 +41014,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality of a physical object that is currently realizing none of its functions. + gkoutos 2012-01-31T04:52:14Z quality @@ -40755,6 +41145,7 @@ Association is weaker than correlation or proportionality. These relations may b A tendency which is relatively high. + gkoutos 2012-03-16T06:31:57Z quality @@ -40779,6 +41170,7 @@ Association is weaker than correlation or proportionality. These relations may b A tendency which is relatively low. + gkoutos 2012-03-16T06:32:57Z quality @@ -40823,6 +41215,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width. + gkoutos 2012-04-18T06:31:29Z quality @@ -41075,6 +41468,7 @@ Association is weaker than correlation or proportionality. These relations may b A structure quality inhering in a bearer by virtue of the bearer's being filled with air. + gkoutos 2012-07-05T02:55:10Z air-filled @@ -41097,6 +41491,7 @@ Association is weaker than correlation or proportionality. These relations may b A structure quality inhering in a bearer by virtue of the bearer's being not filed with air. + gkoutos 2012-07-05T02:56:07Z quality @@ -41204,6 +41599,7 @@ Association is weaker than correlation or proportionality. These relations may b A waxiness which is relatively high. + gkoutos 2012-07-05T03:18:03Z quality @@ -41226,6 +41622,7 @@ Association is weaker than correlation or proportionality. These relations may b A waxiness which is relatively low. + gkoutos 2012-07-05T03:18:14Z quality @@ -41436,6 +41833,7 @@ Association is weaker than correlation or proportionality. These relations may b A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus. + gkoutos 2012-11-15T05:32:07Z quality @@ -41459,6 +41857,7 @@ Association is weaker than correlation or proportionality. These relations may b A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus. + gkoutos 2012-11-15T05:33:05Z quality @@ -42473,6 +42872,7 @@ Association is weaker than correlation or proportionality. These relations may b A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures. + gkoutos 2013-01-29T10:59:42Z quality @@ -42494,6 +42894,7 @@ Association is weaker than correlation or proportionality. These relations may b A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures. + gkoutos 2013-01-29T11:00:20Z quality @@ -42709,6 +43110,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed. + gkoutos 2013-04-08T08:43:31Z quality @@ -43100,6 +43502,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position. + gkoutos 2013-09-15T12:03:45Z quality @@ -43122,6 +43525,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position. + gkoutos 2013-09-15T12:05:06Z quality @@ -43533,6 +43937,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally. + gkoutos 2013-10-10T05:12:15Z anterodorsally directed @@ -43599,6 +44004,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distally. + gkoutos 2013-10-10T05:14:37Z distally directed @@ -43621,6 +44027,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally. + gkoutos 2013-10-10T05:15:24Z dorsally directed @@ -43819,6 +44226,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally. + gkoutos 2013-10-10T05:19:36Z posterodorsally directed @@ -44291,6 +44699,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally. + segerdel 2014-03-11T11:28:39Z antero-distal orientation @@ -44312,6 +44721,7 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally. + segerdel 2014-03-11T11:29:22Z postero-distal orientation @@ -44954,6 +45364,7 @@ height'). A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts. + wasila.dahdul 2014-09-25T15:11:47Z quality @@ -44975,6 +45386,7 @@ height'). A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities. + wasila.dahdul 2014-09-25T15:12:35Z quality @@ -45397,6 +45809,7 @@ height'). A decrease in the ability of a process to produce its output. + cjm quality PATO:0015003 @@ -45418,6 +45831,7 @@ height'). A increase in the ability of a process to produce its output. + cjm quality PATO:0015004 @@ -45551,6 +45965,7 @@ height'). An increase in humidity. + quality humid PATO:0015010 @@ -45572,6 +45987,7 @@ height'). An decrease in humidity. + quality PATO:0015011 @@ -45630,6 +46046,7 @@ height'). An increase in illumination. + quality illuminated PATO:0015014 @@ -45651,6 +46068,7 @@ height'). An decrease in illumination. + quality PATO:0015015 @@ -45792,6 +46210,7 @@ height'). An increase in combustibility. + combustible quality PATO:0015022 @@ -45807,6 +46226,7 @@ height'). An decrease in combustibility. + quality noncombustible PATO:0015023 @@ -45842,6 +46262,7 @@ height'). An decrease in porosity. + quality PATO:0015025 @@ -45903,6 +46324,7 @@ height'). A decrease in stability. + quality PATO:0015028 @@ -46046,6 +46468,7 @@ height'). A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration. + pbuttigieg 2015-09-01T16:18:57Z undrinkable @@ -46067,6 +46490,7 @@ height'). A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration. + pbuttigieg 2015-09-01T16:19:02Z drinkable @@ -48277,6 +48701,7 @@ height'). North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west. + Luke Slater 2017-12-22T14:16:43Z quality @@ -48298,6 +48723,7 @@ height'). East is one of the four cardinal directions or points of the compass. It is the opposite direction from west. + Luke Slater 2017-12-22T14:16:43Z quality @@ -48319,6 +48745,7 @@ height'). South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west. + Luke Slater 2017-12-22T14:16:43Z quality @@ -48340,6 +48767,7 @@ height'). West is one of the four cardinal directions or points of the compass. It is the opposite direction from east. + Luke Slater 2017-12-22T14:16:43Z quality diff --git a/pato.json b/pato.json index d62d334b..8f65ddd3 100644 --- a/pato.json +++ b/pato.json @@ -32,6 +32,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000487" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -73,6 +76,29 @@ }, "type" : "CLASS", "lbl" : "regulation of cell communication" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000487", + "meta" : { + "definition" : { + "val" : "A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "responsive", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000488" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "responsive to" }, { "id" : "http://purl.obolibrary.org/obo/GO_0044424", "meta" : { @@ -97,26 +123,6 @@ }, "type" : "CLASS", "lbl" : "obsolete intracellular part" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000487", - "meta" : { - "definition" : { - "val" : "A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "responsive", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "responsive to" }, { "id" : "http://purl.obolibrary.org/obo/GO_0010647", "meta" : { @@ -548,6 +554,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000498" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -640,6 +649,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000499" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000715" @@ -1534,6 +1546,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001857" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -1958,6 +1973,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001716" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -2302,6 +2320,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001777" } ] }, "type" : "CLASS", @@ -2363,6 +2384,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001776" } ] }, "type" : "CLASS", @@ -2543,6 +2567,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001779" } ] }, "type" : "CLASS", @@ -2576,6 +2603,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001778" } ] }, "type" : "CLASS", @@ -2622,6 +2652,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000330" } ] }, "type" : "CLASS", @@ -2798,6 +2831,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001790" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -2981,6 +3017,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001308" } ] }, "type" : "CLASS", @@ -3027,6 +3066,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001307" } ] }, "type" : "CLASS", @@ -3066,6 +3108,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001306" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000678" @@ -3093,6 +3138,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000677" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001305" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -3206,6 +3254,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001782" } ] }, "type" : "CLASS", @@ -3334,6 +3385,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001783" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3364,6 +3418,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001313" } ] }, "type" : "CLASS", @@ -3529,6 +3586,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001795" } ] }, "type" : "CLASS", @@ -3549,6 +3609,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001311" } ] }, "type" : "CLASS", @@ -3579,6 +3642,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001314" } ] }, "type" : "CLASS", @@ -3599,6 +3665,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000462" } ] }, "type" : "CLASS", @@ -3612,6 +3681,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001319" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3666,6 +3738,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001318" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3748,6 +3823,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001788" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -3802,6 +3880,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, "type" : "CLASS", @@ -3826,6 +3907,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "See documentation here: http://code.google.com/p/phenotype-ontologies/wiki/ModelingOfAbsence" @@ -3885,6 +3969,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001796" } ] }, "type" : "CLASS", @@ -3905,6 +3992,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000460" } ] }, "type" : "CLASS", @@ -3920,6 +4010,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001312" } ] }, "type" : "CLASS", @@ -3955,6 +4048,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000463" } ] }, "type" : "CLASS", @@ -3975,6 +4071,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000464" } ] }, "type" : "CLASS", @@ -4294,6 +4393,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001997" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000650" }, { @@ -4689,6 +4791,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000414" } ] }, "type" : "CLASS", @@ -4876,6 +4981,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001363" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000415" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -4912,6 +5020,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000892" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5206,6 +5317,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001752" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5303,6 +5417,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001742" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5418,6 +5535,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001743" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5463,6 +5583,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000404" } ] }, "type" : "CLASS", @@ -5534,6 +5657,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000402" } ] }, "type" : "CLASS", @@ -5603,6 +5729,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000890" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5643,6 +5772,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000891" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5676,6 +5808,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000888" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5758,6 +5893,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000423" } ] }, "type" : "CLASS", @@ -5806,6 +5944,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001749" } ] }, "type" : "CLASS", @@ -5832,6 +5973,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000422" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5921,6 +6065,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000427" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -5956,6 +6103,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000428" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6072,6 +6222,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001764" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6119,6 +6272,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001760" } ] }, "type" : "CLASS", @@ -6152,6 +6308,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001765" } ] }, "type" : "CLASS", @@ -6264,6 +6423,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001227" } ] }, "type" : "CLASS", @@ -6288,6 +6450,9 @@ "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001762" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6301,6 +6466,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001761" } ] }, "type" : "CLASS", @@ -6325,6 +6493,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001763" } ] }, "type" : "CLASS", @@ -6481,6 +6652,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001706" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6557,6 +6731,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001707" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6607,6 +6784,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001699" } ] }, "type" : "CLASS", @@ -6720,6 +6900,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001501" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6850,6 +7033,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001362" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -6988,6 +7174,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001715" } ] }, "type" : "CLASS", @@ -7027,6 +7216,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001714" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -7042,6 +7234,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001713" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -7072,6 +7267,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001712" } ] }, "type" : "CLASS", @@ -7288,19 +7486,6 @@ }, "type" : "CLASS", "lbl" : "obsolete fearful" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000877", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete absolute respiratory rate value" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001725", "meta" : { @@ -7315,12 +7500,28 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001726" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", "lbl" : "increased male receptivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000877", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute respiratory rate value" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001726", "meta" : { @@ -7337,6 +7538,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001725" } ] }, "type" : "CLASS", @@ -7368,6 +7572,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001724" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -7401,6 +7608,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001723" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -8670,6 +8880,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015022" } ] }, "type" : "CLASS", @@ -8720,6 +8933,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015023" } ] }, "type" : "CLASS", @@ -8750,6 +8966,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015027" } ] }, "type" : "CLASS", @@ -8763,6 +8982,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015024" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -9077,6 +9299,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015011" } ] }, "type" : "CLASS", @@ -9092,6 +9317,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015010" } ] }, "type" : "CLASS", @@ -9142,6 +9370,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015015" } ] }, "type" : "CLASS", @@ -9157,6 +9388,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015014" } ] }, "type" : "CLASS", @@ -9220,6 +9454,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002196" } ] }, "type" : "CLASS", @@ -9233,6 +9470,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002195" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" }, { @@ -9370,6 +9610,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002192" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-03-10T03:25:59Z" @@ -9394,6 +9637,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002191" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -9509,6 +9755,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002147" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-30T05:13:10Z" @@ -9621,6 +9870,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002139" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-26T01:22:27Z" @@ -9729,6 +9981,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002148" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" }, { @@ -9773,6 +10028,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002145" } ] }, "type" : "CLASS", @@ -9786,6 +10044,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002144" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-10-30T03:31:31Z" }, { @@ -10207,6 +10468,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015004" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "cjm" @@ -10225,6 +10489,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015003" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "cjm" @@ -11358,6 +11625,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002099" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" }, { @@ -11798,6 +12068,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001821" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000649" @@ -12384,6 +12657,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002140" } ] }, "type" : "CLASS", @@ -12897,6 +13173,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001700" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -12962,6 +13241,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001698" } ] }, "type" : "CLASS", @@ -13008,6 +13290,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001697" } ] }, "type" : "CLASS", @@ -13091,6 +13376,9 @@ }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "This refers to the disposition of the bearer." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001690" } ] }, "type" : "CLASS", @@ -13177,6 +13465,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001691" } ] }, "type" : "CLASS", @@ -13210,6 +13501,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001696" } ] }, "type" : "CLASS", @@ -13282,6 +13576,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001695" } ] }, "type" : "CLASS", @@ -13300,6 +13597,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001694" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13338,6 +13638,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000370" } ] }, "type" : "CLASS", @@ -13404,6 +13707,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001693" } ] }, "type" : "CLASS", @@ -13460,6 +13766,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000438" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13549,6 +13858,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000328" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13566,6 +13878,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000365" } ] }, "type" : "CLASS", @@ -13634,6 +13949,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000375" } ] }, "type" : "CLASS", @@ -13767,6 +14085,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000374" } ] }, "type" : "CLASS", @@ -13780,6 +14101,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001863" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13935,6 +14259,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000380" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -13959,6 +14286,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000381" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14032,6 +14362,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001234" } ] }, "type" : "CLASS", @@ -14078,6 +14411,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001233" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14095,6 +14431,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000386" } ] }, "type" : "CLASS", @@ -14136,6 +14475,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000387" } ] }, "type" : "CLASS", @@ -14736,6 +15078,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001657" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -14803,6 +15148,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001654" } ] }, "type" : "CLASS", @@ -14907,6 +15255,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001653" } ] }, "type" : "CLASS", @@ -14925,6 +15276,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000665" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15035,6 +15389,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002527" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -15061,6 +15418,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001656" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15087,6 +15447,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001229" } ] }, "type" : "CLASS", @@ -15145,6 +15508,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001650" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15214,6 +15580,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001651" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15444,6 +15813,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001663" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15492,6 +15864,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000331" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000332" @@ -15734,6 +16109,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001670" } ] }, "type" : "CLASS", @@ -15749,6 +16127,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000440" } ] }, "type" : "CLASS", @@ -15782,6 +16163,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001664" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15879,6 +16263,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000336" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15896,6 +16283,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001678" } ] }, "type" : "CLASS", @@ -15945,6 +16335,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000344" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15981,6 +16374,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001677" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -15996,6 +16392,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000345" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16016,6 +16415,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001676" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16093,6 +16495,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001675" } ] }, "type" : "CLASS", @@ -16213,6 +16618,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-03-11T11:28:39Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002491" } ] }, "type" : "CLASS", @@ -16232,6 +16640,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-03-11T11:29:22Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002504" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -16262,6 +16673,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001669" } ] }, "type" : "CLASS", @@ -16390,6 +16804,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001672" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16436,6 +16853,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001671" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16506,6 +16926,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001689" } ] }, "type" : "CLASS", @@ -16584,6 +17007,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001688" } ] }, "type" : "CLASS", @@ -16661,6 +17087,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001685" } ] }, "type" : "CLASS", @@ -16834,6 +17263,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001975" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -16988,6 +17420,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001683" } ] }, "type" : "CLASS", @@ -17065,6 +17500,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001686" } ] }, "type" : "CLASS", @@ -17173,6 +17611,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001684" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17193,6 +17634,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001618" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17239,6 +17683,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001619" } ] }, "type" : "CLASS", @@ -17336,6 +17783,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001613" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17408,6 +17858,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001614" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17526,6 +17979,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001612" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17541,6 +17997,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000770" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17556,6 +18015,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001615" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17711,6 +18173,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000760" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17731,6 +18196,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000761" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17753,6 +18221,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001627" } ] }, "type" : "CLASS", @@ -17795,6 +18266,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001621" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -17906,6 +18380,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001622" } ] }, "type" : "CLASS", @@ -17960,6 +18437,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001628" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18017,6 +18497,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001625" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -18051,6 +18534,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001624" } ] }, "type" : "CLASS", @@ -18077,6 +18563,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000769" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18148,6 +18637,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000308" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18165,6 +18657,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000309" } ] }, "type" : "CLASS", @@ -18178,6 +18673,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001638" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18250,6 +18748,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000299" } ] }, "type" : "CLASS", @@ -18328,6 +18829,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000304" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18445,6 +18949,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000303" } ] }, "type" : "CLASS", @@ -18471,6 +18978,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001639" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18486,6 +18996,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001636" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -18516,6 +19029,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001635" } ] }, "type" : "CLASS", @@ -19791,6 +20307,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001603" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -19839,40 +20358,43 @@ "type" : "CLASS", "lbl" : "obsolete vocalization value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001602", + "id" : "http://purl.obolibrary.org/obo/PATO_0000758", "meta" : { "definition" : { - "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally expanded or increased in size.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A balance quality inhering in a bearer by virtue of the bearer's lacking balance.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "expanded", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000757" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "distended" + "lbl" : "unbalanced" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000758", + "id" : "http://purl.obolibrary.org/obo/PATO_0001602", "meta" : { "definition" : { - "val" : "A balance quality inhering in a bearer by virtue of the bearer's lacking balance.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally expanded or increased in size.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "expanded", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "unbalanced" + "lbl" : "distended" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000757", "meta" : { @@ -19882,6 +20404,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000758" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -19901,6 +20426,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001604" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -20169,6 +20697,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000709" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000708" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -20205,6 +20736,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000706" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000707" }, { @@ -20225,6 +20759,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000700" } ] }, "type" : "CLASS", @@ -20248,6 +20785,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000701" } ] }, "type" : "CLASS", @@ -20644,6 +21184,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002068" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-07-01T02:33:41Z" @@ -20683,6 +21226,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002069" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-07-01T02:31:53Z" @@ -20825,6 +21371,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002075" } ] }, "type" : "CLASS", @@ -20846,6 +21395,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002074" } ] }, "type" : "CLASS", @@ -20900,6 +21452,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002071" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-09-18T01:30:11Z" @@ -20966,6 +21521,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002072" } ] }, "type" : "CLASS", @@ -21226,6 +21784,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002100" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -21493,6 +22054,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002028" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-01-27T10:56:19Z" @@ -21537,6 +22101,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002029" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-01-27T10:55:33Z" @@ -21622,6 +22189,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001171" } ] }, "type" : "CLASS", @@ -21697,6 +22267,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001818" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2008-12-18T12:49:19Z" }, { @@ -21811,6 +22384,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001172" } ] }, "type" : "CLASS", @@ -21829,6 +22405,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000639" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-02-03T11:14:54Z" }, { @@ -21850,6 +22429,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002040" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -22265,6 +22847,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002042" } ] }, "type" : "CLASS", @@ -22337,6 +22922,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001192" } ] }, "type" : "CLASS", @@ -22372,6 +22960,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002043" } ] }, "type" : "CLASS", @@ -22524,6 +23115,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001194" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -22542,6 +23136,9 @@ "val" : "Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx" } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002039" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -22639,6 +23236,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002056" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-26T04:01:37Z" @@ -22662,6 +23262,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002051" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-26T11:12:35Z" }, { @@ -22709,6 +23312,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002057" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-30T04:12:11Z" @@ -22751,6 +23357,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-26T04:02:14Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002055" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -22772,6 +23381,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002058" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2009-03-30T04:11:43Z" @@ -22817,6 +23429,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002052" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" }, { @@ -23409,6 +24024,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-09-15T12:05:06Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002471" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -23535,6 +24153,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002472" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-09-15T12:03:45Z" }, { @@ -23701,6 +24322,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000300" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -23810,6 +24434,9 @@ }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "Use this term or an is_a child of this term when the entire shape of the object is known." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002008" } ] }, "type" : "CLASS", @@ -23828,6 +24455,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002007" } ] }, "type" : "CLASS", @@ -23970,6 +24600,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001153" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -24045,6 +24678,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001152" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -24245,6 +24881,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002002" + }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type." }, { @@ -24287,6 +24926,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002364" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -24323,6 +24965,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002001" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001560" }, { @@ -24441,6 +25086,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002017" } ] }, "type" : "CLASS", @@ -24500,6 +25148,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002018" } ] }, "type" : "CLASS", @@ -24520,6 +25171,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-10-10T05:14:37Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002495" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -24544,6 +25198,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001162" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -24579,6 +25236,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002494" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -24683,6 +25343,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001163" } ] }, "type" : "CLASS", @@ -24713,6 +25376,24 @@ }, "type" : "CLASS", "lbl" : "anteroventral orientation" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001167", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001168" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "damaged" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002498", "meta" : { @@ -24739,21 +25420,6 @@ }, "type" : "CLASS", "lbl" : "medial orientation" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001167", - "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "damaged" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002014", "meta" : { @@ -24821,6 +25487,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001167" } ] }, "type" : "CLASS", @@ -24963,19 +25632,6 @@ "id" : "http://www.geneontology.org/formats/oboInOwl#SubsetProperty", "type" : "PROPERTY", "lbl" : "subset_property" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001160", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete unconcentrated" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002491", "meta" : { @@ -24990,6 +25646,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002526" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -25002,6 +25661,19 @@ }, "type" : "CLASS", "lbl" : "anterodorsal orientation" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001160", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete unconcentrated" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000246", "meta" : { @@ -25052,6 +25724,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001577" } ] }, "type" : "CLASS", @@ -25142,6 +25817,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001575" } ] }, "type" : "CLASS", @@ -25209,6 +25887,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001578" } ] }, "type" : "CLASS", @@ -25518,6 +26199,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001576" } ] }, "type" : "CLASS", @@ -25777,6 +26461,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001588" } ] }, "type" : "CLASS", @@ -25862,6 +26549,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001587" } ] }, "type" : "CLASS", @@ -25981,6 +26671,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001580" } ] }, "type" : "CLASS", @@ -26034,6 +26727,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001581" } ] }, "type" : "CLASS", @@ -26194,6 +26890,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001584" } ] }, "type" : "CLASS", @@ -26259,6 +26958,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001583" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -26723,6 +27425,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001593" } ] }, "type" : "CLASS", @@ -26738,6 +27443,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001592" } ] }, "type" : "CLASS", @@ -26840,6 +27548,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001472" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001666" }, { @@ -26975,6 +27686,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002442" } ] }, "type" : "CLASS", @@ -27087,6 +27801,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002441" } ] }, "type" : "CLASS", @@ -27645,6 +28362,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2013-04-08T08:43:31Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001485" } ] }, "type" : "CLASS", @@ -27844,6 +28564,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000695" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -27992,6 +28715,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001537" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -28025,6 +28751,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000690" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000429" }, { @@ -28111,6 +28840,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001538" } ] }, "type" : "CLASS", @@ -28261,6 +28993,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001544" } ] }, "type" : "CLASS", @@ -28458,6 +29193,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001545" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -28523,6 +29261,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001550" } ] }, "type" : "CLASS", @@ -28669,6 +29410,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000689" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000426" }, { @@ -28834,6 +29578,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000688" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -29175,6 +29922,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001553" } ] }, "type" : "CLASS", @@ -29434,6 +30184,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001551" } ] }, "type" : "CLASS", @@ -29488,6 +30241,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001554" } ] }, "type" : "CLASS", @@ -29525,6 +30281,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001549" } ] }, "type" : "CLASS", @@ -29562,6 +30321,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001552" } ] }, "type" : "CLASS", @@ -29624,6 +30386,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001566" } ] }, "type" : "CLASS", @@ -29772,6 +30537,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001567" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001513" @@ -29972,6 +30740,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001562" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000578" @@ -30141,6 +30912,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000579" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001563" } ] }, "type" : "CLASS", @@ -30196,6 +30970,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000651" } ] }, "type" : "CLASS", @@ -30239,6 +31016,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001206" } ] }, "type" : "CLASS", @@ -30266,6 +31046,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000645" } ] }, "type" : "CLASS", @@ -30388,6 +31171,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000644" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -30733,6 +31519,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001701" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -31133,6 +31922,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000642" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -31323,6 +32115,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000468" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000470" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -31420,6 +32215,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001511" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -31457,6 +32255,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000327" } ] }, "type" : "CLASS", @@ -31489,6 +32290,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001640" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001510" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -32479,6 +33283,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000610" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -32544,6 +33351,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001931" } ] }, "type" : "CLASS", @@ -32559,6 +33369,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001930" } ] }, "type" : "CLASS", @@ -32585,6 +33398,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000599" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -32853,6 +33669,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000633" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -32970,6 +33789,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000608" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -32977,26 +33799,29 @@ "type" : "CLASS", "lbl" : "open" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001945", + "id" : "http://purl.obolibrary.org/obo/PATO_0000613", "meta" : { "definition" : { - "val" : "A moderate yellow-orange to orange color.", - "xrefs" : [ "wordreference:wordreference" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000614" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "ochre" + "lbl" : "disoriented" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000613", + "id" : "http://purl.obolibrary.org/obo/PATO_0001945", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A moderate yellow-orange to orange color.", + "xrefs" : [ "wordreference:wordreference" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -33005,7 +33830,7 @@ } ] }, "type" : "CLASS", - "lbl" : "disoriented" + "lbl" : "ochre" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001946", "meta" : { @@ -33075,35 +33900,38 @@ "type" : "CLASS", "lbl" : "wholly anterioralized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001944", + "id" : "http://purl.obolibrary.org/obo/PATO_0000614", "meta" : { "definition" : { - "val" : "A color consisting of yellow and orange hue.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A pattern where all the repeated elements are oriented in the same direction.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000613" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "yellow orange" + "lbl" : "oriented" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000614", + "id" : "http://purl.obolibrary.org/obo/PATO_0001944", "meta" : { "definition" : { - "val" : "A pattern where all the repeated elements are oriented in the same direction.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A color consisting of yellow and orange hue.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "oriented" + "lbl" : "yellow orange" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000628", "meta" : { @@ -33169,6 +33997,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001957" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -33199,6 +34030,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001861" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -33414,6 +34248,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001958" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -33653,6 +34490,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002038" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -33786,6 +34626,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000619" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -34249,6 +35092,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2014-09-25T15:11:47Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0005013" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -34273,6 +35119,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "wasila.dahdul" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0005012" } ] }, "type" : "CLASS", @@ -34438,10 +35287,6 @@ }, "type" : "CLASS", "lbl" : "multinucleate" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#consider", - "type" : "PROPERTY", - "lbl" : "consider" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001901", "meta" : { @@ -34451,12 +35296,19 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001900" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", "lbl" : "back" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#consider", + "type" : "PROPERTY", + "lbl" : "consider" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001902", "meta" : { @@ -34481,6 +35333,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001901" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -34753,6 +35608,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001926" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -34811,6 +35669,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001927" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -35507,6 +36368,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-07-05T03:18:03Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002383" } ] }, "type" : "CLASS", @@ -35542,6 +36406,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002382" } ] }, "type" : "CLASS", @@ -35894,6 +36761,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002394" } ] }, "type" : "CLASS", @@ -35938,6 +36808,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002393" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-11-15T05:33:05Z" @@ -36346,6 +37219,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Luke Slater" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0045093" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-12-22T14:16:43Z" @@ -36370,6 +37246,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Luke Slater" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0045094" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -36404,6 +37283,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0045091" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -36441,6 +37323,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "Luke Slater" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0045092" } ] }, "type" : "CLASS", @@ -36983,6 +37868,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001494" } ] }, "type" : "CLASS", @@ -37080,6 +37968,9 @@ }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001493" } ] }, "type" : "CLASS", @@ -38027,6 +38918,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002354" } ] }, "type" : "CLASS", @@ -38171,6 +39065,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-31T04:52:04Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002355" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -38422,6 +39319,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-03-16T06:32:57Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002361" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -38579,6 +39479,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002362" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-03-16T06:31:57Z" }, { @@ -38640,6 +39543,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0025002" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -38713,50 +39619,53 @@ "type" : "CLASS", "lbl" : "obsolete consumption quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001035", + "id" : "http://purl.obolibrary.org/obo/PATO_0025002", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.", - "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration.", + "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "force amplitude", + "val" : "drinkable", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0025001" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2015-09-01T16:19:02Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "pbuttigieg" } ] }, "type" : "CLASS", - "lbl" : "force" + "lbl" : "potable" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0025002", + "id" : "http://purl.obolibrary.org/obo/PATO_0001035", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration.", - "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "drinkable", + "val" : "force amplitude", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2015-09-01T16:19:02Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "pbuttigieg" } ] }, "type" : "CLASS", - "lbl" : "potable" + "lbl" : "force" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000186", "meta" : { @@ -38824,6 +39733,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001154" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -39324,6 +40236,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001046" } ] }, "type" : "CLASS", @@ -39499,6 +40414,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002376" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -39533,6 +40451,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001043" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -39639,6 +40560,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-07-05T02:55:10Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002377" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -39976,6 +40900,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -40061,6 +40988,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-06-16T06:54:01Z" @@ -40082,6 +41012,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001456" } ] }, "type" : "CLASS", @@ -40094,6 +41027,9 @@ "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002304" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-06-16T06:50:59Z" }, { @@ -40130,6 +41066,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001455" } ] }, "type" : "CLASS", @@ -40142,6 +41081,9 @@ "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002305" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" }, { @@ -40251,6 +41193,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001460" } ] }, "type" : "CLASS", @@ -40361,6 +41306,9 @@ "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002301" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -40409,6 +41357,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-06-16T06:40:15Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002300" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -41028,6 +41979,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001459" } ] }, "type" : "CLASS", @@ -41594,6 +42548,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002328" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-23T12:06:38Z" }, { @@ -41753,6 +42710,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-11-23T12:06:54Z" @@ -41822,6 +42782,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001596" } ] }, "type" : "CLASS", @@ -41942,6 +42905,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001476" } ] }, "type" : "CLASS", @@ -41971,6 +42937,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-10-12T12:51:19Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002321" } ] }, "type" : "CLASS", @@ -41996,19 +42965,6 @@ }, "type" : "CLASS", "lbl" : "temporal distribution quality" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000142", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete substance" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001476", "meta" : { @@ -42023,12 +42979,28 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001475" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", "lbl" : "decreased position" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000142", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete substance" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002320", "meta" : { @@ -42144,6 +43116,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002322" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-10-12T12:50:59Z" @@ -42826,6 +43801,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002334" } ] }, "type" : "CLASS", @@ -42915,6 +43893,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002333" } ] }, "type" : "CLASS", @@ -42997,6 +43978,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002332" } ] }, "type" : "CLASS", @@ -43032,6 +44016,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001840" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002452" } ] }, "type" : "CLASS", @@ -43058,6 +44045,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2012-01-31T12:28:57Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002331" } ] }, "type" : "CLASS", @@ -43271,6 +44261,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001896" } ] }, "type" : "CLASS", @@ -43312,6 +44305,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001899" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -43344,6 +44340,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001412" } ] }, "type" : "CLASS", @@ -43372,6 +44371,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001897" } ] }, "type" : "CLASS", @@ -43405,6 +44407,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001411" } ] }, "type" : "CLASS", @@ -43423,6 +44428,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000570" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -43440,6 +44448,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001416" } ] }, "type" : "CLASS", @@ -43481,6 +44492,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001898" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -43534,6 +44548,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001417" } ] }, "type" : "CLASS", @@ -43569,6 +44586,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001892" } ] }, "type" : "CLASS", @@ -43683,6 +44703,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001893" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44031,6 +45054,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000569" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44134,6 +45160,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000573" } ] }, "type" : "CLASS", @@ -44164,6 +45193,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000574" } ] }, "type" : "CLASS", @@ -44318,6 +45350,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000586" } ] }, "type" : "CLASS", @@ -44417,6 +45452,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0001202" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000587" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -44745,6 +45783,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000582" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -44771,6 +45812,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000583" } ] }, "type" : "CLASS", @@ -44806,6 +45850,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "val" : "PATO:0000412" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000584" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -44842,6 +45889,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000585" } ] }, "type" : "CLASS", @@ -45099,6 +46149,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000600" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45264,6 +46317,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000591" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45298,6 +46354,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000592" } ] }, "type" : "CLASS", @@ -45391,6 +46450,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000595" } ] }, "type" : "CLASS", @@ -45464,6 +46526,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000596" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -45654,6 +46719,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001860" } ] }, "type" : "CLASS", @@ -45812,6 +46880,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001355" } ] }, "type" : "CLASS", @@ -46111,6 +47182,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000389" } ] }, "type" : "CLASS", @@ -46270,6 +47344,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001859" } ] }, "type" : "CLASS", @@ -46288,6 +47365,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001959" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -46472,6 +47552,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000546" } ] }, "type" : "CLASS", @@ -46516,6 +47599,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000547" } ] }, "type" : "CLASS", @@ -46752,6 +47838,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001884" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -46823,6 +47912,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001885" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -46840,6 +47932,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001886" } ] }, "type" : "CLASS", @@ -46922,6 +48017,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001887" } ] }, "type" : "CLASS", @@ -47230,36 +48328,39 @@ "type" : "CLASS", "lbl" : "catalytic activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000969", + "id" : "http://purl.obolibrary.org/obo/PATO_0001817", "meta" : { "definition" : { - "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally small.", - "xrefs" : [ "Answers.com:Answers.com" ] + "val" : "A fatigability which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "dwarfed", + "val" : "low fatigability", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001816" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dwarf-like" + "lbl" : "decreased fatigability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001817", + "id" : "http://purl.obolibrary.org/obo/PATO_0000969", "meta" : { "definition" : { - "val" : "A fatigability which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally small.", + "xrefs" : [ "Answers.com:Answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low fatigability", + "val" : "dwarfed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -47268,7 +48369,7 @@ } ] }, "type" : "CLASS", - "lbl" : "decreased fatigability" + "lbl" : "dwarf-like" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001818", "meta" : { @@ -47278,6 +48379,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002026" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47326,6 +48430,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001817" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47415,6 +48522,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000964" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47482,6 +48592,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000963" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47703,6 +48816,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001825" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47768,6 +48884,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002112" } ] }, "type" : "CLASS", @@ -47835,6 +48954,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001823" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47863,6 +48985,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001826" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -47908,6 +49033,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001824" } ] }, "type" : "CLASS", @@ -48037,6 +49165,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001838" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48098,6 +49229,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001839" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48131,6 +49265,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001830" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48146,6 +49283,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000982" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48166,6 +49306,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001833" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48186,6 +49329,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000983" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48216,6 +49362,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000984" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48231,6 +49380,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000985" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48251,6 +49403,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001831" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48301,6 +49456,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001834" } ] }, "type" : "CLASS", @@ -48382,6 +49540,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001832" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48397,6 +49558,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000504" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48432,6 +49596,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001835" } ] }, "type" : "CLASS", @@ -48458,6 +49625,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000505" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48727,6 +49897,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001844" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48920,6 +50093,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000516" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48940,6 +50116,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001843" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -48960,6 +50139,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000513" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49592,9 +50774,15 @@ }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "'increase in temperature' is-opposite-of 'decrease in temperature'" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_class_level", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "val" : "is_opposite_of" @@ -49658,6 +50846,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000937" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49673,6 +50864,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000938" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -49987,6 +51181,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001808" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -50072,6 +51269,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001807" } ] }, "type" : "CLASS", @@ -50227,6 +51427,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000955" } ] }, "type" : "CLASS", @@ -50242,6 +51445,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000956" } ] }, "type" : "CLASS", @@ -50567,6 +51773,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000911" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -50587,6 +51796,9 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000912" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] @@ -50762,6 +51974,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002220" } ] }, "type" : "CLASS", @@ -51505,6 +52720,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002271" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-10-26T02:00:20Z" @@ -51552,6 +52770,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002270" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-10-26T02:04:45Z" @@ -51599,6 +52820,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002286" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-03-10T09:07:57Z" @@ -51623,6 +52847,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002285" } ] }, "type" : "CLASS", @@ -51644,6 +52871,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002282" } ] }, "type" : "CLASS", @@ -51707,6 +52937,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2011-03-30T11:50:21Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002288" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -51731,6 +52964,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002287" } ] }, "type" : "CLASS", @@ -51805,6 +53041,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002283" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -51874,6 +53113,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002298" } ] }, "type" : "CLASS", @@ -51930,6 +53172,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002297" } ] }, "type" : "CLASS", @@ -52429,6 +53674,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002263" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -52622,6 +53870,9 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002222" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-07-09T01:51:52Z" @@ -52706,6 +53957,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-07-09T01:54:22Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002221" } ] }, "type" : "CLASS", @@ -53408,6 +54662,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002248" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-08-09T04:17:04Z" @@ -53468,6 +54725,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002249" } ] }, "type" : "CLASS", @@ -53691,6 +54951,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002246" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -53763,6 +55026,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002245" } ] }, "type" : "CLASS", @@ -54141,6 +55407,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-08-09T04:17:19Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002251" } ] }, "type" : "CLASS", @@ -54190,6 +55459,9 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002250" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", "val" : "2010-08-09T04:17:37Z" @@ -54465,18 +55737,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001247", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002332", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002331" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001381", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002017", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001280", "pred" : "is_a", @@ -54485,10 +55749,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001756", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001585" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002029", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002028" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098772", "pred" : "is_a", @@ -54497,22 +55757,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001053" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001700", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001699" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002038", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000639" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002441", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002442" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0042995", "pred" : "is_a", @@ -54581,10 +55829,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000937", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000938" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000328", "pred" : "is_a", @@ -54641,10 +55885,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0045936", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0006796" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001691", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001690" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002252", "pred" : "is_a", @@ -54765,18 +56005,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002355", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002354" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000947", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002318" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002246", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002245" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001712", "pred" : "is_a", @@ -54793,26 +56025,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001862", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000274" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002028", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002029" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002026", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001818" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002339", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000454" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001975", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001206" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002332" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001515", "pred" : "is_a", @@ -54829,10 +56045,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001779", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001808", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001807" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045065", "pred" : "is_a", @@ -54893,10 +56105,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000409", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001460", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001459" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001921", "pred" : "is_a", @@ -54905,10 +56113,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002221", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002221" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043229", "pred" : "is_a", @@ -54921,10 +56125,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001593", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001592" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000599", "pred" : "is_a", @@ -54945,14 +56145,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000415", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001794" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001690", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001691" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000708", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000706" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002260", "pred" : "is_a", @@ -54961,10 +56153,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045087", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045000" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000938", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000937" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045091", "pred" : "is_a", @@ -54985,10 +56173,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001473", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000470" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001581", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001580" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001890", "pred" : "is_a", @@ -55009,14 +56193,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001769", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0001010", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/BFO_0000040" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001769", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001457", "pred" : "is_a", @@ -55057,18 +56241,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001480", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002464", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045077", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002039", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002040" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002464", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001713", "pred" : "is_a", @@ -55089,14 +56269,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051347", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043085" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002477", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0007165", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0051716" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002477", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001413", "pred" : "is_a", @@ -55105,18 +56285,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002179", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002322", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002321" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002189", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001632", "pred" : "is_a", @@ -55134,17 +56306,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001590" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", + "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048585", "pred" : "is_a", @@ -55169,10 +56341,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001290" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000592" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001241", "pred" : "is_a", @@ -55185,10 +56353,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001400", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002249", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002248" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001549", "pred" : "is_a", @@ -55245,14 +56409,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004034", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004032" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001824", "pred" : "is_a", @@ -55269,10 +56433,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000070", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0001555" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001790", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001788" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002250", "pred" : "is_a", @@ -55285,10 +56445,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002334", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002333" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001986", "pred" : "is_a", @@ -55305,10 +56461,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001475", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009967", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -55317,10 +56469,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0025002", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0025001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001863", "pred" : "is_a", @@ -55333,14 +56481,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001233", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001234" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001584", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001583" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002332", "pred" : "is_a", @@ -55357,10 +56497,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0030000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000646" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000600", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000599" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004035", "pred" : "subPropertyOf", @@ -55377,10 +56513,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001294", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001292" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001694" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001578", "pred" : "is_a", @@ -55425,10 +56557,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001393", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001374" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002139", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002247", "pred" : "is_a", @@ -55461,18 +56589,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001242" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002220", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002263" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002248", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002249" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000374", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000375" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001401", "pred" : "is_a", @@ -55481,18 +56597,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000911", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002442", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002441" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000386", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000387" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002333", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002334" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0033674", "pred" : "is_a", @@ -55501,26 +56605,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001620", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002018", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002017" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001248", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002321", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002322" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001380", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000955" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001380", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000066", "pred" : "is_a", @@ -55593,10 +56689,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002022", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000592", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000591" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098797", "pred" : "is_a", @@ -55617,14 +56709,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001825", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001054", "pred" : "is_a", @@ -55633,10 +56725,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001657", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015022", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015023" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001611", "pred" : "is_a", @@ -55689,10 +56777,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002538", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002005" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001229", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000328" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002258", "pred" : "inverseOf", @@ -55729,10 +56813,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002042", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001715" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001583", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001584" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", "pred" : "is_a", @@ -55801,14 +56881,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002069", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002067" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001230" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001490" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045001", "pred" : "is_a", @@ -55841,14 +56921,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001773", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001178" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001643", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045047", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001178" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001402", "pred" : "is_a", @@ -55857,10 +56937,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001542", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000083" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001817", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001816" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001171", "pred" : "is_a", @@ -55885,22 +56961,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001599", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002376", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001318", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000189" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001927" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002452", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001485" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", "pred" : "is_a", @@ -55985,10 +57049,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0055001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002001", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002002" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002362", "pred" : "is_a", @@ -55997,10 +57057,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001997", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045093", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045091" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000169", "pred" : "is_a", @@ -56049,10 +57105,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002507", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001493", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001494" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0025001", "pred" : "is_a", @@ -56065,10 +57117,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0048585", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048583" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000470", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001997" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002338", "pred" : "is_a", @@ -56077,10 +57125,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002478", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001410" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045092", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045094" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000083", "pred" : "is_a", @@ -56161,14 +57205,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002367", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000384" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", "pred" : "is_a", @@ -56201,10 +57245,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045082", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001818", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002026" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001806", "pred" : "is_a", @@ -56225,10 +57265,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001655", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001817" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000596", "pred" : "is_a", @@ -56253,10 +57289,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001607", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001846" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002472", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002471" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001645", "pred" : "is_a", @@ -56269,10 +57301,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001390", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001389" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001701", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001501" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001764", "pred" : "is_a", @@ -56281,10 +57309,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001726", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001721" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001707", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001706" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001788", "pred" : "is_a", @@ -56321,42 +57345,26 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0023051", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0050789" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002364", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001154" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001965", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002351", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001877", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001419" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002145", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002144" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002351", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002140", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002138" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045091", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045093" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002541", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001152" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", "pred" : "is_a", @@ -56373,10 +57381,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002482", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000438", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001227" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000336", "pred" : "is_a", @@ -56445,10 +57449,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009893", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048518" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001901", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001900" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002481", "pred" : "subPropertyOf", @@ -56489,14 +57489,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0025000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001807", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001808" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002148", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002147" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001359", "pred" : "is_a", @@ -56509,10 +57501,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000625" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002354", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002355" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045044", "pred" : "is_a", @@ -56533,10 +57521,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000381", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000380" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002300", "pred" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", @@ -56549,14 +57533,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001614", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000467", "pred" : "is_a", @@ -56593,10 +57577,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001499", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002221", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005488", "pred" : "is_a", @@ -56605,10 +57585,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000911", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000912" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001808", "pred" : "is_a", @@ -56617,10 +57593,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000060", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002246" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002286", "pred" : "subPropertyOf", @@ -56677,14 +57649,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002428", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002263" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001472", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001596" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001592", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001593" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015014", "pred" : "is_a", @@ -56697,10 +57661,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002483", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001580", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001581" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001962", "pred" : "is_a", @@ -56769,14 +57729,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001244", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000380", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000381" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001168", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001167" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000945", "pred" : "is_a", @@ -56805,14 +57757,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002269", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002377", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002376" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001927", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001926" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045031", "pred" : "is_a", @@ -56853,14 +57797,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001615", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", "pred" : "is_a", @@ -56921,26 +57865,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002271", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001699", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001700" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002013", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045094", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045092" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0055002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", "pred" : "is_a", @@ -56977,14 +57913,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001762", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000279" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001959", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001861" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002147", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002148" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001888", "pred" : "is_a", @@ -57005,58 +57933,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001626", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002002", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002001" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0016301", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001206", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001975" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001903", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001963", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001903", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051348", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051338" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001494", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001493" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000911" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002148", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001154", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002364" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000082", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001167", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001168" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000708" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005013", "pred" : "is_a", @@ -57085,10 +57985,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000070", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000068" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001227", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000438" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000440", "pred" : "is_a", @@ -57173,10 +58069,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002050", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0001905" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000599", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000600" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002186", "pred" : "is_a", @@ -57186,17 +58078,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001046", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001043" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001269", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001055", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001269", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002287", "pred" : "is_a", @@ -57205,22 +58093,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000625", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000370", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000365" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001324", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000608", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000610" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000619", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000633" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045006", "pred" : "is_a", @@ -57241,14 +58117,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002151", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001785" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002201", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002016" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002201", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002326", "pred" : "is_a", @@ -57269,10 +58145,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005622", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005575" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001958", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001957" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002139", "pred" : "is_a", @@ -57301,10 +58173,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0019220", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051174" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001618" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", "pred" : "is_a", @@ -57345,10 +58213,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002157", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001852" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002251", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002250" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000927", "pred" : "is_a", @@ -57373,10 +58237,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001026", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002287", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002288" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000119", "pred" : "is_a", @@ -57385,10 +58245,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000614", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000613" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002014", "pred" : "subPropertyOf", @@ -57397,10 +58253,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002058" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001389", "pred" : "is_a", @@ -57413,10 +58265,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0031325", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009893" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002069", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002068" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001375", "pred" : "is_a", @@ -57453,22 +58301,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001418", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001487", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001372", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001294" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001487", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004047", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002418" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000505", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000504" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002322", "pred" : "is_a", @@ -57477,10 +58321,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001398", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002102" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001162", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001163" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001341", "pred" : "is_a", @@ -57493,10 +58333,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009892", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0019222" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002250", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002251" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001462", "pred" : "is_a", @@ -57533,10 +58369,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001960", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001825", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001826" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002220", "pred" : "is_a", @@ -57613,22 +58445,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002335", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001619" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005575" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001715", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001714" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002383", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002382" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", "pred" : "is_a", @@ -57649,10 +58469,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000150", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001859", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001860" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000614", "pred" : "is_a", @@ -57661,10 +58477,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000700", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000701" }, { "sub" : "http://purl.obolibrary.org/obo/CL_0000000", "pred" : "is_a", @@ -57693,14 +58505,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002015", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002336" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002056", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002055" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002286", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002285" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001376", "pred" : "is_a", @@ -57717,14 +58521,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000631", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002298", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002297" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002068", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002069" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005018", "pred" : "is_a", @@ -57741,10 +58537,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045041", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000300", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001378", "pred" : "is_a", @@ -57813,10 +58605,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001546", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002198" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002382", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002383" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001586", "pred" : "is_a", @@ -57853,10 +58641,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002074", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001824", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001406", "pred" : "is_a", @@ -57869,10 +58653,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001796", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001958" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001946", "pred" : "is_a", @@ -57889,10 +58669,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001704", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001424" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001839", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001838" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002465", "pred" : "is_a", @@ -57933,30 +58709,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001961", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001934", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001961", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0050794" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002495", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002494" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002362", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002361" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045004", "pred" : "is_a", @@ -57969,10 +58737,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001242", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002469", "pred" : "is_a", @@ -58001,10 +58765,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005929", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/GO_0030990" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002471", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002472" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030005", "pred" : "is_a", @@ -58037,10 +58797,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002349", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002144", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002145" }, { "sub" : "http://purl.obolibrary.org/obo/pato#has_divisor_quality", "pred" : "subPropertyOf", @@ -58053,14 +58809,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005017", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000955", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000956" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000701", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000700" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000546", "pred" : "is_a", @@ -58125,18 +58873,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002405", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002412" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001043", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001046" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001989", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001591" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001152", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001153" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002595", "pred" : "subPropertyOf", @@ -58145,10 +58885,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002404", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000328", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001229" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000937", "pred" : "is_a", @@ -58217,14 +58953,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002537", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002137", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002136" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0042327", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", "obj" : "http://purl.obolibrary.org/obo/GO_0016310" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002137", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002136" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001935", "pred" : "is_a", @@ -58261,10 +58997,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001900", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001901" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048018", "pred" : "is_a", @@ -58285,10 +59017,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002029", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002027" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001825" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045009", "pred" : "is_a", @@ -58325,14 +59053,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002352", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001838", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001839" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000389", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001863" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001868", "pred" : "is_a", @@ -58357,18 +59077,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002494", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002495" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001863", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000389" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002361", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002362" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002181", "pred" : "is_a", @@ -58441,14 +59149,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002258", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002058", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002288", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002287" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001870", "pred" : "is_a", @@ -58469,10 +59169,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002385", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002384" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000956", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000955" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002023", "pred" : "subPropertyOf", @@ -58533,10 +59229,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001486", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001163", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001162" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001827", "pred" : "is_a", @@ -58661,10 +59353,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001638" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040006", "pred" : "is_a", @@ -58697,14 +59385,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045067", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002271", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002270" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000665", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000327" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002009", "pred" : "is_a", @@ -58721,18 +59401,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005515", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005488" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000513", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000516" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0050790" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002282" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001178", "pred" : "is_a", @@ -58769,10 +59441,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000410", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000985", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000984" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043549", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -58809,10 +59477,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002375", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000428", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000427" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002024", "pred" : "subPropertyOf", @@ -58825,10 +59489,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001397", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001194", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001192" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001494", "pred" : "is_a", @@ -58837,10 +59497,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045080", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002146" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002271" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045060", "pred" : "is_a", @@ -58849,10 +59505,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002242", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002282", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002283" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001581", "pred" : "is_a", @@ -58881,10 +59533,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005886", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0016020" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001603", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001604" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040001", "pred" : "is_a", @@ -58893,10 +59541,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001627", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001628" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002256", "pred" : "is_a", @@ -58905,22 +59549,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002394", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000515" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001930", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001931" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002396", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001723" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001615", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001614" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0033674", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -58953,10 +59585,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002245", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001035" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001833", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001832" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001637", "pred" : "is_a", @@ -58965,10 +59593,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002285", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001712", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001713" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001942", "pred" : "is_a", @@ -58977,14 +59601,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001601", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0048584", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0048518" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045029", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048584", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048518" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001021", "pred" : "is_a", @@ -59061,10 +59685,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000078", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002323" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002052", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001710", "pred" : "is_a", @@ -59081,14 +59701,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000308", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000309" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001192", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001194" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002254", "pred" : "subPropertyOf", @@ -59097,10 +59709,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000274", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001434" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000404", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000415" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015025", "pred" : "is_a", @@ -59149,18 +59757,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045030", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000125" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001335", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001895" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001385" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000888", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000892" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001335", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001895" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002333", "pred" : "is_a", @@ -59173,18 +59777,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009966", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0025001", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0025002" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002051", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001614", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001615" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001472", "pred" : "is_a", @@ -59193,10 +59785,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0020000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000047" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001832", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001833" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048518", "pred" : "is_a", @@ -59217,10 +59805,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001639" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001759", "pred" : "is_a", @@ -59233,10 +59817,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000303", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002040", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002039" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002246", "pred" : "is_a", @@ -59261,14 +59841,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001844", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001843" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001723", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001724" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002105", "pred" : "is_a", @@ -59301,18 +59873,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000760", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001726", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001725" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001815" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002394", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002393" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002088", "pred" : "is_a", @@ -59345,10 +59909,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000516" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001171", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001172" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001360", "pred" : "is_a", @@ -59361,14 +59921,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000609", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000610" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002285", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002286" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001997", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000470" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", @@ -59381,14 +59933,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001260", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000951" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002043", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002042" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002297", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002298" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098590", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -59401,14 +59945,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001621", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000963", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000964" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002055", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002056" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002013", "pred" : "subPropertyOf", @@ -59421,14 +59957,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000639", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002038" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001749", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005006", "pred" : "is_a", @@ -59449,10 +59977,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001289", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001287" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000757", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000758" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001922", "pred" : "is_a", @@ -59469,14 +59993,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000642", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002014", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002013" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002222" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002014", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002013" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002629", "pred" : "subPropertyOf", @@ -59501,22 +60025,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000309", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000308" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001172", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001171" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000643", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001598" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002393", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002394" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002138", "pred" : "is_a", @@ -59545,10 +60057,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002100", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001714", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001715" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045026", "pred" : "is_a", @@ -59557,14 +60065,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001873", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002132", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000946", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002132", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051100", "pred" : "is_a", @@ -59589,10 +60097,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001605", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001835", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001834" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001468", "pred" : "is_a", @@ -59613,10 +60117,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001768", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002140", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002139" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001482", "pred" : "is_a", @@ -59629,14 +60129,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002104", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001823", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001824" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000299", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000300" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002380", "pred" : "is_a", @@ -59665,10 +60157,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000152" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001355", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001851", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -59685,14 +60173,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001914", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001912" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001628", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001627" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002526", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002491" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000308", "pred" : "is_a", @@ -59718,17 +60198,13 @@ "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0016020" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002042", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002043" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001923", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001923", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", "pred" : "is_a", @@ -59741,14 +60217,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005102", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005515" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001043" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043227", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043226" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001043" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001206", "pred" : "is_a", @@ -59769,10 +60245,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002340", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002339" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000964", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000963" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002240", "pred" : "is_a", @@ -59785,10 +60257,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001288", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001287" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000613", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001201", "pred" : "is_a", @@ -59797,10 +60265,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000504", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000505" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900121", "pred" : "is_a", @@ -59809,18 +60273,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001168", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001020" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000516", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000513" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000423", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000056" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000758", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000757" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002450", "pred" : "is_a", @@ -59841,10 +60297,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002015", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002013" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002263", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002131", "pred" : "is_a", @@ -59869,14 +60321,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001580", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001690" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000769", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000770" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001725", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001726" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002414", "pred" : "is_a", @@ -59885,10 +60329,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001715", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000574" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001713", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001712" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002164", "pred" : "is_a", @@ -59905,10 +60345,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001604", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001603" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002031", "pred" : "is_a", @@ -59937,10 +60373,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002453", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001835" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002172", "pred" : "is_a", @@ -59953,22 +60385,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002299", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002078" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002101", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002306", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002101", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002262", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001931", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001930" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000037", "pred" : "is_a", @@ -60017,10 +60445,6 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000066", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000067" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001307" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", "pred" : "is_a", @@ -60037,10 +60461,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002282", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002504", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002527" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0044237", "pred" : "is_a", @@ -60065,10 +60485,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001549", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001550" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001349", "pred" : "is_a", @@ -60109,10 +60525,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002223", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000303", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001688", "pred" : "is_a", @@ -60177,22 +60589,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001552", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001457" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045073", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045051", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001323" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045073", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001739", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000689", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000690" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001543", "pred" : "is_a", @@ -60221,10 +60629,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001664", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002072", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002071" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002566", "pred" : "subPropertyOf", @@ -60249,18 +60653,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001950", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000944" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001417", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001416" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001538", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045058", "pred" : "is_a", @@ -60325,10 +60721,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015002" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001635", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001636" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009893", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -60349,10 +60741,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045028", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000891" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000633", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000619" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000584", "pred" : "is_a", @@ -60365,14 +60753,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000634", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000626", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000634", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002370", "pred" : "is_a", @@ -60393,18 +60781,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000386", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000048" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000982", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000983" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002023", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002630" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001319", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001318" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0030000", "pred" : "is_a", @@ -60425,10 +60805,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002385", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001410" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000546", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000547" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002343", "pred" : "is_a", @@ -60441,10 +60817,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002392", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000304", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002198", "pred" : "is_a", @@ -60461,10 +60833,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002598", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002596" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001669", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001670" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", @@ -60485,10 +60853,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002098", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000642", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000651" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002305", "pred" : "is_a", @@ -60509,10 +60873,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002314", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002502" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000414", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002272", "pred" : "is_a", @@ -60525,14 +60885,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001315", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001653", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001652" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001333", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002324" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001653", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001652" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001312", "pred" : "is_a", @@ -60581,10 +60941,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001464", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002071", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002072" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001575", "pred" : "is_a", @@ -60597,10 +60953,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002046", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002192", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002191" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001191", "pred" : "is_a", @@ -60641,10 +60993,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001988", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001416", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001417" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040025", "pred" : "is_a", @@ -60653,10 +61001,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000119" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001538" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001369", "pred" : "is_a", @@ -60665,10 +61009,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001695", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001779", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001778" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001987", "pred" : "is_a", @@ -60681,14 +61021,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002024", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002629" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000569", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000570" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001307", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001308" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0000000", "pred" : "is_a", @@ -60713,14 +61045,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001622", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001621" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001743", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001742" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002239", "pred" : "is_a", @@ -60777,10 +61101,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002425", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000644", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000645" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000582", "pred" : "is_a", @@ -60793,10 +61113,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002331", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002217" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002196", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002195" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001488", "pred" : "is_a", @@ -60813,14 +61129,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002333", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002075", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002074" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000983", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000982" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000570", "pred" : "is_a", @@ -60841,10 +61149,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002438", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000547", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000546" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001348", "pred" : "is_a", @@ -60873,22 +61177,18 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0098796", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0032991" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000415", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002294", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002060", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001293" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001323" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002060", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001293" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045042", "pred" : "is_a", @@ -60965,30 +61265,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001566" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002074", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002075" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002195", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002196" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001831", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001830" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045048", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001843", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001844" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001613", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001612" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045056", "pred" : "is_a", @@ -61001,10 +61281,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0031325", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0031323" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001625", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001624" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001461", "pred" : "is_a", @@ -61037,10 +61313,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000161", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002062" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0005013", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0005012" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001835", "pred" : "is_a", @@ -61113,10 +61385,6 @@ "sub" : "http://purl.obolibrary.org/obo/CARO_0000014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/CARO_0000003" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000610", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000608" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004032", "pred" : "subPropertyOf", @@ -61145,14 +61413,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002230", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000402", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000414" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000984", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000985" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002096", "pred" : "is_a", @@ -61229,10 +61489,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040010", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000427", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002315", "pred" : "is_a", @@ -61245,10 +61501,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045035", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001655" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000644" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001445", "pred" : "is_a", @@ -61389,14 +61641,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000375", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000040" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001636", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001635" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045049", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", "pred" : "is_a", @@ -61405,14 +61649,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001193", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045049", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001258", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000954" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001830", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001831" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045023", "pred" : "is_a", @@ -61421,10 +61665,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002352", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001729" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001613" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", "pred" : "is_a", @@ -61433,10 +61673,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0043226", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0110165" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001624", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001625" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", "pred" : "is_a", @@ -61453,10 +61689,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001879", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0005012", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0005013" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000405", "pred" : "is_a", @@ -61533,22 +61765,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001832", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000651", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000642" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002041", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002316", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002129", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002011" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002316", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002436", "pred" : "is_a", @@ -61629,10 +61857,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000370", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001510", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001511" }, { "sub" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "pred" : "subPropertyOf", @@ -61677,10 +61901,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001409", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001897", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001896" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045054", "pred" : "is_a", @@ -61713,10 +61933,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001352", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001019" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001887" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002357", "pred" : "is_a", @@ -61729,18 +61945,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002461", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002165" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001764", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001765" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002051", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001776", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001777" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002533", "pred" : "is_a", @@ -61761,10 +61969,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000017", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000892", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000888" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045042", "pred" : "is_a", @@ -61817,10 +62021,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001459", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001460" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001813", "pred" : "is_a", @@ -61829,14 +62029,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001833", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001230", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001230", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000276", "pred" : "is_a", @@ -61873,10 +62073,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002040", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001355" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000760", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000761" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000395", "pred" : "is_a", @@ -61917,10 +62113,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002437", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002527", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002504" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002076", "pred" : "is_a", @@ -61957,14 +62149,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002063", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001685", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001682" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015009" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001685", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001682" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001227", "pred" : "is_a", @@ -62001,10 +62193,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001347", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001335" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001859" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001192", "pred" : "is_a", @@ -62061,22 +62249,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045045", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001741" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001752", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001749" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001951", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001886" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000336", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000331" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001278", "pred" : "is_a", @@ -62101,10 +62277,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001562", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000125" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001678", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001677" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001671", "pred" : "is_a", @@ -62121,10 +62293,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015021" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001896", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001897" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002217", "pred" : "inverseOf", @@ -62165,10 +62333,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001654", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001653" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045055", "pred" : "is_a", @@ -62181,22 +62345,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001545", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001412", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001763", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001760" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040026", "pred" : "is_a", @@ -62237,14 +62389,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005007", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002430", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000638", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002430", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002062", "pred" : "is_a", @@ -62341,10 +62493,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002336", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000760" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002039", "pred" : "is_a", @@ -62353,10 +62501,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001377", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001393" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000422", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000423" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002447", "pred" : "subPropertyOf", @@ -62433,10 +62577,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002191", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002192" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", @@ -62485,18 +62625,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040017", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001433" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001561", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001564" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001657", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001656" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001519", "pred" : "is_a", @@ -62533,14 +62665,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040022", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001318", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001319" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001621", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001622" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045052", "pred" : "is_a", @@ -62549,10 +62673,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002202", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002201" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001743" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", "pred" : "is_a", @@ -62569,14 +62689,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001816", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001779" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001887", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001885" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001899", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001898" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0023052", "pred" : "is_a", @@ -62589,10 +62701,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002241", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001979" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001362", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001716" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001604", "pred" : "is_a", @@ -62601,10 +62709,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002218", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001778", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001779" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002431", "pred" : "is_a", @@ -62633,10 +62737,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002422", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001788", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001790" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002213", "pred" : "inverseOf", @@ -62697,22 +62797,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000624", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", - "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002007", + "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002435", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000423", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000422" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002389", "pred" : "is_a", @@ -62749,10 +62845,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001477", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002491", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002526" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0031324", "pred" : "is_a", @@ -62813,18 +62905,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045045", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000688", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000695" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002432", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001821", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002112" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001548", "pred" : "is_a", @@ -62885,10 +62969,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001776" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001450", "pred" : "is_a", @@ -62897,10 +62977,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045089", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045088" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001898", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001899" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0000006", "pred" : "is_a", @@ -62961,10 +63037,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001305", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001306" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001919", "pred" : "is_a", @@ -62973,22 +63045,18 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002086", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002222" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001657" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001430", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/PATO_0002212" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001430", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002324", "pred" : "is_a", @@ -63001,10 +63069,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002253", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000407" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001886", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045065", "pred" : "is_a", @@ -63017,14 +63081,6 @@ "sub" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001511", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001510" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001765", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001764" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000763", "pred" : "is_a", @@ -63045,10 +63101,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001699", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000062" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000695", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000688" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000320", "pred" : "is_a", @@ -63065,10 +63117,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001314" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002304", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001412", "pred" : "is_a", @@ -63081,14 +63129,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001665", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000331", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000336" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000574" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001652", "pred" : "is_a", @@ -63137,10 +63177,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0065009", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0003674" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000487" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0032991", "pred" : "is_a", @@ -63149,18 +63185,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001189", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015003", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015004" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002144", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002328", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002327" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002481", "pred" : "is_a", @@ -63174,21 +63202,13 @@ "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002411" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000464", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000463" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000585", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000584" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001528", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001519" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001331" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001528", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001519" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000018", "pred" : "is_a", @@ -63197,10 +63217,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001975", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001976" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015015", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002504", "pred" : "is_a", @@ -63273,10 +63289,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001676", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001663", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001664" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045068", "pred" : "is_a", @@ -63285,14 +63297,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001783", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001651", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001650" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001676" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002411", "pred" : "subPropertyOf", @@ -63317,10 +63321,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002183", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001892" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002468", "pred" : "is_a", @@ -63349,10 +63349,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001760", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001763" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002539", "pred" : "is_a", @@ -63409,58 +63405,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000117" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001553" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900122", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_1900120" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001567", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001990", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001567", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001796", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001795" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001566", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001567" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001716", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001362" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000502" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001578", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001577" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001276", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000321" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001312", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001311" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002303", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000460", "pred" : "is_a", @@ -63469,10 +63437,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001423", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001372" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015028", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015027" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045078", "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", @@ -63481,10 +63445,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0031323", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0044237" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000344", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000345" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001787", "pred" : "is_a", @@ -63493,10 +63453,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000982", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000970" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000586", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000955", "pred" : "is_a", @@ -63557,10 +63513,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001504", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001502" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000573" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001579", "pred" : "is_a", @@ -63573,14 +63525,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001417", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001309" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015003" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002327", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001807", "pred" : "is_a", @@ -63625,10 +63569,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001533", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000019" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001650", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001651" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001651", "pred" : "is_a", @@ -63637,10 +63577,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002134", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001311", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001312" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000056", "pred" : "is_a", @@ -63673,22 +63609,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001927", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001795", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002496", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001783", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001782" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001553", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001554" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001901", "pred" : "is_a", @@ -63721,22 +63645,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002518", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001892", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001893" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0030545", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0098772" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002196", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0050001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002196", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002019", "pred" : "is_a", @@ -63801,22 +63721,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000701", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0005011", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0005011", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1902531", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009966" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001686", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001685" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000574", "pred" : "is_a", @@ -63825,10 +63741,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001577", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001578" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001275", "pred" : "is_a", @@ -63837,22 +63749,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001698", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001697" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002268", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002099", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002100" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001456", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001455" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000125", "pred" : "is_a", @@ -63873,10 +63773,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015026", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000890", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000891" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002630", "pred" : "is_a", @@ -63909,10 +63805,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001482", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000440", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002284", "pred" : "is_a", @@ -63953,10 +63845,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001199", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000587", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001525", "pred" : "is_a", @@ -64053,10 +63941,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002235", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000345", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000344" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002214", "pred" : "is_a", @@ -64081,14 +63965,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002106", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002054", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002078", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002054", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002403", "pred" : "is_a", @@ -64101,10 +63985,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001954", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001199" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001411", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001412" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001856", "pred" : "is_a", @@ -64121,10 +64001,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045079", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001653", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001654" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002399", "pred" : "is_a", @@ -64169,14 +64045,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005929", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0120025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001744", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001739" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000077" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001744", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001739" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000330", "pred" : "is_a", @@ -64189,18 +64065,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000588", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002100", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000967", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001689", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001688" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001052", "pred" : "is_a", @@ -64257,14 +64125,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_1902532", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009968" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001762", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001761" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001677", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001161", "pred" : "is_a", @@ -64273,14 +64133,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001544", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001545" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001314", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001313" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005024", "pred" : "is_a", @@ -64329,10 +64181,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000984", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000973" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002305", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0032092", "pred" : "is_a", @@ -64349,10 +64197,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001307", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001314" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000891", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000890" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001512", "pred" : "is_a", @@ -64373,10 +64217,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001538", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001861", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001959" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001429", "pred" : "is_a", @@ -64414,17 +64254,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000327", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000665" + "sub" : "http://purl.obolibrary.org/obo/PATO_0002503", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001576", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002503", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001405", "pred" : "is_a", @@ -64441,10 +64277,6 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000467", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000462" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002411", "pred" : "is_a", @@ -64501,10 +64333,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001782", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001501", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001701" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045067", "pred" : "is_a", @@ -64521,10 +64349,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001761", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001762" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001892", "pred" : "is_a", @@ -64549,14 +64373,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002205", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002226", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002194", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002226", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001912", "pred" : "is_a", @@ -64633,10 +64457,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005023", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000770", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000769" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002254", "pred" : "is_a", @@ -64665,14 +64485,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001264", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000403", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045086", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000403", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000321", "pred" : "is_a", @@ -64681,26 +64501,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045084" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001664", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001663" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001688", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001689" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001676", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001675" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001313", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001314" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001567", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001566" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001566", "pred" : "is_a", @@ -64713,10 +64513,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002353", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000460", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098772", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -64753,10 +64549,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000505", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000375", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000374" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", @@ -64817,10 +64609,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045063", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015011", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015010" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002521", "pred" : "is_a", @@ -64849,10 +64637,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001719", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015023", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015022" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002231", "pred" : "is_a", @@ -64889,10 +64673,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001547" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000387", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000386" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001874", "pred" : "is_a", @@ -64905,26 +64685,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001290", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001753", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002534", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001535", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001753", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001533" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002123", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002300", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001535", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001533" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001432", "pred" : "is_a", @@ -64941,10 +64717,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001578", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001549" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045050", "pred" : "is_a", @@ -64957,10 +64729,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001698", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001683", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001684" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002428", "pred" : "is_a", @@ -64969,14 +64737,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002191", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002190" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001695", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001696" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001562", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001563" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048522", "pred" : "is_a", @@ -65013,10 +64773,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0003824", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0003674" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015010", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002165", "pred" : "is_a", @@ -65029,10 +64785,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002108", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000623" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001671", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001672" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045023", "pred" : "is_a", @@ -65061,10 +64813,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002036", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000690", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000689" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045005", "pred" : "is_a", @@ -65121,14 +64869,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002480", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001448" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000582", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000583" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000330", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000440" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000365", "pred" : "is_a", @@ -65173,26 +64913,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001296", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002008", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001454", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000085" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000461", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000460" + "sub" : "http://purl.obolibrary.org/obo/PATO_0000632", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002501", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000632", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002405", "pred" : "subPropertyOf", @@ -65285,10 +65017,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001524", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001520" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001857", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001355" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002513", "pred" : "is_a", @@ -65313,10 +65041,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001741" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001670", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001669" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001621", "pred" : "is_a", @@ -65333,14 +65057,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001887", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001886" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001754", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002535", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001754", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002090", "pred" : "subPropertyOf", @@ -65373,10 +65097,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001694", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001693" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001834", "pred" : "is_a", @@ -65389,10 +65109,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0048523", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048519" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001485", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002452" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002143", "pred" : "is_a", @@ -65425,14 +65141,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001682", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002216", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002429", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002216", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002192", "pred" : "is_a", @@ -65441,14 +65157,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045060", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002073", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002073", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001284", "pred" : "is_a", @@ -65465,10 +65181,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002037", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000570", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000569" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001970", "pred" : "is_a", @@ -65485,10 +65197,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002041" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001596", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001472" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045024", "pred" : "is_a", @@ -65497,18 +65205,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009966" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001476", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001475" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002428", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002431" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001234", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001233" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001195", "pred" : "is_a", @@ -65533,10 +65233,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0120025", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/GO_0098590" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000573", "pred" : "is_a", @@ -65545,10 +65241,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000915" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000498", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000499" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000331", "pred" : "is_a", @@ -65573,10 +65265,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001905", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "obj" : "http://purl.obolibrary.org/obo/PATO_0002050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000583", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000582" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002515", "pred" : "is_a", @@ -65589,10 +65277,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002524", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000595", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000596" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0007165", "pred" : "is_a", @@ -65673,18 +65357,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001316", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002302", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001654", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001652" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015025", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015024" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002168", "pred" : "is_a", @@ -65701,22 +65377,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002254", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002255" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001782", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001783" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001554", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001459" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001685", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001686" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001455", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001456" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900122", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -65729,10 +65393,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0050896", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0008150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001552", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001551" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040020", "pred" : "is_a", @@ -65741,10 +65401,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002417", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001697", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001698" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", "pred" : "is_a", @@ -65765,14 +65421,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001321", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000761", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001321", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001826", "pred" : "is_a", @@ -65793,14 +65449,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001839", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000062", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001530" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048583", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0050896" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000062", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001530" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001696", "pred" : "is_a", @@ -65861,10 +65517,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0023057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001576", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001575" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001510", "pred" : "is_a", @@ -65893,14 +65545,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002290" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001588", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001587" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002301", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002300" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045090", "pred" : "is_a", @@ -65925,26 +65569,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000957", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000487", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000488" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005634", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043231" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000463", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000464" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002520", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000584", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000585" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000586", "pred" : "is_a", @@ -65953,14 +65585,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000499", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000498" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015014", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015015" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002224", "pred" : "is_a", @@ -65969,10 +65593,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001328", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001325" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000365", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000370" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030003", "pred" : "is_a", @@ -65985,10 +65605,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002630", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002578" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000596", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000595" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001889", "pred" : "is_a", @@ -65997,14 +65613,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001194", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002261", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002155", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002261", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001793", "pred" : "is_a", @@ -66017,14 +65633,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001317", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002070", "pred" : "is_a", @@ -66069,14 +65685,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001697", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001551", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001552" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001672", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001671" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002156", "pred" : "is_a", @@ -66089,26 +65697,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001322", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001587", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001588" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001563", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001562" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001684", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001683" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001577", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001575", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001576" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001852", "pred" : "is_a", @@ -66137,10 +65729,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001680", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000918" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002112", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001821" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001801", "pred" : "is_a", @@ -66157,22 +65745,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001339", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000619", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000627", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000619", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001511", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001696", - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001695" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000367", "pred" : "is_a", @@ -66752,17 +66336,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0003674" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] }, { @@ -66945,17 +66529,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010563", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010562", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0006793" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010562", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010563", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0006793" } ] }, { @@ -67351,17 +66935,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043086", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043085", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043085", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043086", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" } ] }, { @@ -68433,17 +68017,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048585", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048584", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0050896" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048584", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048585", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0050896" } ] }, { @@ -68825,14 +68409,6 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000050", "allValuesFromEdges" : [ { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" - }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" @@ -68840,10 +68416,18 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" } ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002506", diff --git a/pato.obo b/pato.obo index aff006be..0ae34a0a 100644 --- a/pato.obo +++ b/pato.obo @@ -1736,6 +1736,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000004 ! mobility disjoint_from: PATO:0000300 ! immobile +relationship: is_opposite_of PATO:0000300 ! immobile [Term] id: PATO:0000300 @@ -1745,6 +1746,7 @@ subset: disposition_slim subset: value_slim synonym: "fixed" RELATED [] is_a: PATO:0000004 ! mobility +relationship: is_opposite_of PATO:0000299 ! mobile [Term] id: PATO:0000301 @@ -1765,6 +1767,7 @@ synonym: "fast speed" RELATED [] synonym: "high speed" EXACT [] is_a: PATO:0000008 ! speed is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0000304 ! decreased speed [Term] id: PATO:0000304 @@ -1775,6 +1778,7 @@ synonym: "slow" EXACT [] synonym: "slow speed" EXACT [] is_a: PATO:0000008 ! speed is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0000303 ! increased speed [Term] id: PATO:0000305 @@ -1797,6 +1801,7 @@ name: old def: "An age which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0000011 ! age +relationship: is_opposite_of PATO:0000309 ! young [Term] id: PATO:0000309 @@ -1804,6 +1809,7 @@ name: young def: "An age which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0000011 ! age +relationship: is_opposite_of PATO:0000308 ! old [Term] id: PATO:0000310 @@ -1921,6 +1927,7 @@ def: "A color brightness which is relatively low." [PATOC:MAH] subset: value_slim synonym: "dark" EXACT [] is_a: PATO:0000016 ! color brightness +relationship: is_opposite_of PATO:0000665 ! high brightness [Term] id: PATO:0000328 @@ -1930,6 +1937,7 @@ subset: value_slim synonym: "dull" RELATED [] synonym: "pale" EXACT [] is_a: PATO:0000017 ! color saturation +relationship: is_opposite_of PATO:0001229 ! high saturation [Term] id: PATO:0000329 @@ -1947,6 +1955,7 @@ subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0000060 ! spatial pattern +relationship: is_opposite_of PATO:0000440 ! regular spatial pattern [Term] id: PATO:0000331 @@ -1954,6 +1963,7 @@ name: discolored def: "A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color." [Dictionary.com:Dictionary.com] subset: value_slim is_a: PATO:0000019 ! color pattern +relationship: is_opposite_of PATO:0000336 ! colored [Term] id: PATO:0000333 @@ -1976,6 +1986,7 @@ def: "A color quality inhering in a bearer by virtue of the bearer's having colo subset: value_slim synonym: "pigmented" RELATED [] is_a: PATO:0000014 ! color +relationship: is_opposite_of PATO:0000331 ! discolored [Term] id: PATO:0000337 @@ -2025,6 +2036,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0000021 ! compatibility disjoint_from: PATO:0000345 ! incompatible +relationship: is_opposite_of PATO:0000345 ! incompatible [Term] id: PATO:0000345 @@ -2034,6 +2046,7 @@ subset: disposition_slim subset: relational_slim subset: value_slim is_a: PATO:0000021 ! compatibility +relationship: is_opposite_of PATO:0000344 ! compatible [Term] id: PATO:0000346 @@ -2136,6 +2149,7 @@ name: down def: "A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction +relationship: is_opposite_of PATO:0000370 ! up [Term] id: PATO:0000366 @@ -2167,6 +2181,7 @@ name: up def: "A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction +relationship: is_opposite_of PATO:0000365 ! down [Term] id: PATO:0000371 @@ -2192,6 +2207,7 @@ subset: value_slim synonym: "long distance" RELATED [] is_a: PATO:0000040 ! distance is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0000375 ! decreased distance [Term] id: PATO:0000375 @@ -2202,6 +2218,7 @@ subset: value_slim synonym: "short distance" RELATED [] is_a: PATO:0000040 ! distance is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0000374 ! increased distance [Term] id: PATO:0000376 @@ -2233,6 +2250,7 @@ synonym: "frequent" RELATED [] synonym: "high frequency" EXACT [] is_a: PATO:0000044 ! frequency is_a: PATO:0000912 ! increased rate +relationship: is_opposite_of PATO:0000381 ! decreased frequency [Term] id: PATO:0000381 @@ -2244,6 +2262,7 @@ synonym: "infrequent" RELATED [] synonym: "low frequency" EXACT [] is_a: PATO:0000044 ! frequency is_a: PATO:0000911 ! decreased rate +relationship: is_opposite_of PATO:0000380 ! increased frequency [Term] id: PATO:0000382 @@ -2283,6 +2302,7 @@ synonym: "impenetrable" RELATED [] synonym: "tough" RELATED [] is_a: PATO:0000048 ! hardness is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0000387 ! soft [Term] id: PATO:0000387 @@ -2293,6 +2313,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0000048 ! hardness is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0000386 ! hard [Term] id: PATO:0000388 @@ -2307,6 +2328,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0001309 ! duration +relationship: is_opposite_of PATO:0001863 ! chronic [Term] id: PATO:0000390 @@ -2392,6 +2414,7 @@ synonym: "ramified" EXACT [] synonym: "ramiform" EXACT [] is_a: PATO:0002009 ! branchiness disjoint_from: PATO:0000414 ! unbranched +relationship: is_opposite_of PATO:0000414 ! unbranched [Term] id: PATO:0000403 @@ -2416,6 +2439,7 @@ synonym: "helicoidal" RELATED [] synonym: "helix-shaped" RELATED [] synonym: "spiral" EXACT [] is_a: PATO:0001794 ! coiling +relationship: is_opposite_of PATO:0000415 ! uncoiled [Term] id: PATO:0000405 @@ -2494,6 +2518,7 @@ subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0002009 ! branchiness +relationship: is_opposite_of PATO:0000402 ! branched [Term] id: PATO:0000415 @@ -2503,6 +2528,7 @@ subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0001794 ! coiling +relationship: is_opposite_of PATO:0000404 ! coiled [Term] id: PATO:0000416 @@ -2531,6 +2557,7 @@ def: "A nutritional quality inhering in a bearer by virtue of the bearer's inabi subset: disposition_slim subset: value_slim is_a: PATO:0000056 ! trophic quality +relationship: is_opposite_of PATO:0000423 ! prototrophic [Term] id: PATO:0000423 @@ -2539,6 +2566,7 @@ def: "A nutritional quality inhering in a bearer by virtue of the bearer's abili subset: disposition_slim subset: value_slim is_a: PATO:0000056 ! trophic quality +relationship: is_opposite_of PATO:0000422 ! auxotrophic [Term] id: PATO:0000424 @@ -2559,6 +2587,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000428 ! sporadic [Term] id: PATO:0000428 @@ -2568,6 +2597,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000427 ! recurrent [Term] id: PATO:0000430 @@ -2621,6 +2651,7 @@ subset: value_slim synonym: "constant" RELATED [] synonym: "uniform" EXACT [] is_a: PATO:0001303 ! variability +relationship: is_opposite_of PATO:0001227 ! variant [Term] id: PATO:0000439 @@ -2635,6 +2666,7 @@ subset: mpath_slim subset: relational_slim subset: value_slim is_a: PATO:0000060 ! spatial pattern +relationship: is_opposite_of PATO:0000330 ! irregular spatial pattern [Term] id: PATO:0000441 @@ -2763,6 +2795,7 @@ synonym: "atypia" RELATED [] synonym: "atypical" RELATED [] synonym: "defective" RELATED [] is_a: PATO:0000069 ! deviation(from_normal) +relationship: is_opposite_of PATO:0000461 ! normal [Term] id: PATO:0000461 @@ -2773,6 +2806,7 @@ subset: mpath_slim subset: value_slim synonym: "average" RELATED [] is_a: PATO:0000068 ! qualitative +relationship: is_opposite_of PATO:0000460 ! abnormal [Term] id: PATO:0000462 @@ -2787,6 +2821,7 @@ synonym: "absence" EXACT [] synonym: "absent from organism" EXACT [] is_a: PATO:0000070 ! amount disjoint_from: PATO:0000467 ! present +relationship: is_opposite_of PATO:0000467 ! present relationship: reciprocal_of PATO:0001558 ! lacking processual parts relationship: reciprocal_of PATO:0002000 ! lacks all parts of type @@ -2798,6 +2833,7 @@ subset: mpath_slim subset: value_slim synonym: "distinct" RELATED [] is_a: PATO:0001998 ! conspicuousness +relationship: is_opposite_of PATO:0000464 ! inconspicuous [Term] id: PATO:0000464 @@ -2807,6 +2843,7 @@ subset: mpath_slim subset: value_slim synonym: "faint" RELATED [] is_a: PATO:0001998 ! conspicuousness +relationship: is_opposite_of PATO:0000463 ! conspicuous [Term] id: PATO:0000465 @@ -2826,6 +2863,7 @@ subset: absent_slim subset: value_slim synonym: "present in organism" RELATED [] is_a: PATO:0000070 ! amount +relationship: is_opposite_of PATO:0000462 ! absent [Term] id: PATO:0000469 @@ -2846,6 +2884,7 @@ synonym: "present in greater numbers in organism" EXACT [] synonym: "supernumerary" EXACT [] is_a: PATO:0000467 ! present is_a: PATO:0002300 ! increased quality +relationship: is_opposite_of PATO:0001997 ! decreased amount [Term] id: PATO:0000471 @@ -2937,6 +2976,7 @@ subset: value_slim synonym: "responsive" EXACT [] is_a: PATO:0000077 ! response to disjoint_from: PATO:0000488 ! unresponsive to +relationship: is_opposite_of PATO:0000488 ! unresponsive to [Term] id: PATO:0000488 @@ -2947,6 +2987,7 @@ subset: relational_slim subset: value_slim synonym: "unresponsive" EXACT [] is_a: PATO:0000077 ! response to +relationship: is_opposite_of PATO:0000487 ! responsive to [Term] id: PATO:0000489 @@ -3007,6 +3048,7 @@ synonym: "prolonged period" RELATED [] synonym: "slow time" RELATED [] is_a: PATO:0001309 ! duration is_a: PATO:0002304 ! increased process quality +relationship: is_opposite_of PATO:0000499 ! decreased duration [Term] id: PATO:0000499 @@ -3021,6 +3063,7 @@ synonym: "low period" EXACT [] synonym: "shortened period" EXACT [] is_a: PATO:0001309 ! duration is_a: PATO:0002302 ! decreased process quality +relationship: is_opposite_of PATO:0000498 ! increased duration [Term] id: PATO:0000500 @@ -3057,6 +3100,7 @@ name: arrhythmic def: "A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm." [PATOC:GVG] subset: value_slim is_a: PATO:0000078 ! rhythm quality +relationship: is_opposite_of PATO:0000505 ! rhythmic [Term] id: PATO:0000505 @@ -3064,6 +3108,7 @@ name: rhythmic def: "A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm." [PATOC:GVG] subset: value_slim is_a: PATO:0000078 ! rhythm quality +relationship: is_opposite_of PATO:0000504 ! arrhythmic [Term] id: PATO:0000506 @@ -3110,6 +3155,7 @@ subset: value_slim synonym: "insensitive" EXACT [] synonym: "resistant" RELATED [] is_a: PATO:0000085 ! sensitivity toward +relationship: is_opposite_of PATO:0000516 ! sensitive toward [Term] id: PATO:0000514 @@ -3136,6 +3182,7 @@ subset: relational_slim subset: value_slim synonym: "sensitive" EXACT [] is_a: PATO:0000085 ! sensitivity toward +relationship: is_opposite_of PATO:0000513 ! insensitive toward [Term] id: PATO:0000517 @@ -3291,6 +3338,7 @@ subset: value_slim synonym: "photoresistant" RELATED [] is_a: PATO:0000927 ! photosensitivity disjoint_from: PATO:0000547 ! photosensitive +relationship: is_opposite_of PATO:0000547 ! photosensitive [Term] id: PATO:0000547 @@ -3299,6 +3347,7 @@ def: "A photosensitivity quality inhering in a bearer by virtue of the bearer's subset: disposition_slim subset: value_slim is_a: PATO:0000927 ! photosensitivity +relationship: is_opposite_of PATO:0000546 ! photoinsensitive [Term] id: PATO:0000548 @@ -3415,6 +3464,7 @@ subset: value_slim synonym: "short" RELATED [] is_a: PATO:0000119 ! height is_a: PATO:0000587 ! decreased size +relationship: is_opposite_of PATO:0000570 ! increased height [Term] id: PATO:0000570 @@ -3424,6 +3474,7 @@ subset: value_slim synonym: "tall" RELATED [] is_a: PATO:0000119 ! height is_a: PATO:0000586 ! increased size +relationship: is_opposite_of PATO:0000569 ! decreased height [Term] id: PATO:0000571 @@ -3443,6 +3494,7 @@ subset: value_slim synonym: "long" EXACT [] is_a: PATO:0000122 ! length is_a: PATO:0000586 ! increased size +relationship: is_opposite_of PATO:0000574 ! decreased length [Term] id: PATO:0000574 @@ -3454,6 +3506,7 @@ synonym: "shortened" RELATED [] synonym: "stubby" RELATED [] is_a: PATO:0000122 ! length is_a: PATO:0000587 ! decreased size +relationship: is_opposite_of PATO:0000573 ! increased length [Term] id: PATO:0000575 @@ -3489,6 +3542,7 @@ synonym: "heavy" EXACT [] synonym: "high weight" EXACT [] is_a: PATO:0000128 ! weight is_a: PATO:0002245 ! increased force +relationship: is_opposite_of PATO:0000583 ! decreased weight [Term] id: PATO:0000583 @@ -3499,6 +3553,7 @@ synonym: "light weight" EXACT [] synonym: "low weight" EXACT [] is_a: PATO:0000128 ! weight is_a: PATO:0002246 ! decreased force +relationship: is_opposite_of PATO:0000582 ! increased weight [Term] id: PATO:0000584 @@ -3508,6 +3563,7 @@ subset: mpath_slim subset: value_slim synonym: "hypertrophy" NARROW [] is_a: PATO:0000595 ! increased volume +relationship: is_opposite_of PATO:0000585 ! hypotrophic [Term] id: PATO:0000585 @@ -3518,6 +3574,7 @@ subset: mpath_slim subset: value_slim synonym: "shrunken" EXACT [] is_a: PATO:0000596 ! decreased volume +relationship: is_opposite_of PATO:0000584 ! hypertrophic [Term] id: PATO:0000586 @@ -3532,6 +3589,7 @@ synonym: "great" RELATED [] synonym: "large" RELATED [] is_a: PATO:0000117 ! size is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0000587 ! decreased size [Term] id: PATO:0000587 @@ -3545,6 +3603,7 @@ synonym: "tiny" RELATED [] synonym: "underdeveloped" NARROW [] is_a: PATO:0000117 ! size is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0000586 ! increased size [Term] id: PATO:0000588 @@ -3576,6 +3635,7 @@ synonym: "thick" RELATED [] synonym: "thickened" EXACT [] is_a: PATO:0000586 ! increased size is_a: PATO:0000915 ! thickness +relationship: is_opposite_of PATO:0000592 ! decreased thickness [Term] id: PATO:0000592 @@ -3588,6 +3648,7 @@ synonym: "slender" RELATED [] synonym: "thin" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0000915 ! thickness +relationship: is_opposite_of PATO:0000591 ! increased thickness [Term] id: PATO:0000593 @@ -3609,6 +3670,7 @@ synonym: "high volume" EXACT [] synonym: "large volume" RELATED [] is_a: PATO:0000586 ! increased size is_a: PATO:0000918 ! volume +relationship: is_opposite_of PATO:0000596 ! decreased volume [Term] id: PATO:0000596 @@ -3620,6 +3682,7 @@ synonym: "low volume" EXACT [] synonym: "small volume" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0000918 ! volume +relationship: is_opposite_of PATO:0000595 ! increased volume [Term] id: PATO:0000597 @@ -3639,6 +3702,7 @@ subset: value_slim synonym: "narrow" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0000921 ! width +relationship: is_opposite_of PATO:0000600 ! increased width [Term] id: PATO:0000600 @@ -3650,6 +3714,7 @@ synonym: "wide" RELATED [] synonym: "wide/broad" RELATED [] is_a: PATO:0000586 ! increased size is_a: PATO:0000921 ! width +relationship: is_opposite_of PATO:0000599 ! decreased width [Term] id: PATO:0000601 @@ -3696,6 +3761,7 @@ subset: value_slim synonym: "blocked" RELATED [] is_a: PATO:0000136 ! closure disjoint_from: PATO:0000610 ! open +relationship: is_opposite_of PATO:0000610 ! open [Term] id: PATO:0000609 @@ -3710,6 +3776,7 @@ name: open def: "A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view." [answers.com:answers.com] subset: value_slim is_a: PATO:0000136 ! closure +relationship: is_opposite_of PATO:0000608 ! closed [Term] id: PATO:0000611 @@ -3727,6 +3794,7 @@ name: disoriented def: "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation." [PATOC:GVG] subset: value_slim is_a: PATO:0000330 ! irregular spatial pattern +relationship: is_opposite_of PATO:0000614 ! oriented [Term] id: PATO:0000614 @@ -3734,6 +3802,7 @@ name: oriented def: "A pattern where all the repeated elements are oriented in the same direction." [PATOC:MAH] subset: value_slim is_a: PATO:0000440 ! regular spatial pattern +relationship: is_opposite_of PATO:0000613 ! disoriented [Term] id: PATO:0000615 @@ -3776,6 +3845,7 @@ name: crowded def: "A positional quality inhering in a bearer by virtue of the bearer's being overfilled." [WordNet:WordNet] subset: value_slim is_a: PATO:0000140 ! position +relationship: is_opposite_of PATO:0000633 ! uncrowded [Term] id: PATO:0000620 @@ -3893,6 +3963,7 @@ name: uncrowded def: "A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled." [PATOC:GVG] subset: value_slim is_a: PATO:0000060 ! spatial pattern +relationship: is_opposite_of PATO:0000619 ! crowded [Term] id: PATO:0000634 @@ -3943,6 +4014,7 @@ is_a: PATO:0002037 ! degeneration disjoint_from: PATO:0001623 ! atrophied disjoint_from: PATO:0002038 ! non-degenerate relationship: has_part PATO:0000585 ! hypotrophic +relationship: is_opposite_of PATO:0002038 ! non-degenerate [Term] id: PATO:0000640 @@ -3971,6 +4043,7 @@ synonym: "fused to" EXACT [] synonym: "joined with" RELATED [] synonym: "merged with" RELATED [] is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0000651 ! unfused from [Term] id: PATO:0000643 @@ -3990,6 +4063,7 @@ subset: value_slim synonym: "hyperplasia" EXACT [] synonym: "overdeveloped" RELATED [] is_a: PATO:0000586 ! increased size +relationship: is_opposite_of PATO:0000645 ! hypoplastic [Term] id: PATO:0000645 @@ -4002,6 +4076,7 @@ synonym: "hypoplasia" EXACT [] synonym: "underdeveloped" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0002290 ! aplastic/hypoplastic +relationship: is_opposite_of PATO:0000644 ! hyperplastic [Term] id: PATO:0000646 @@ -4036,6 +4111,7 @@ subset: relational_slim subset: value_slim synonym: "unfused" EXACT [] is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0000642 ! fused with [Term] id: PATO:0000652 @@ -4109,6 +4185,7 @@ def: "A color brightness which is relatively high." [PATOC:MAH] subset: value_slim synonym: "light" EXACT [] is_a: PATO:0000016 ! color brightness +relationship: is_opposite_of PATO:0000327 ! low brightness [Term] id: PATO:0000666 @@ -4216,6 +4293,7 @@ name: asynchronous def: "A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase." [WordNet:WordNet] subset: value_slim is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000695 ! synchronous [Term] id: PATO:0000689 @@ -4225,6 +4303,7 @@ def: "A quality of a single process inhering in a bearer by virtue of the bearer subset: value_slim synonym: "uninterrupted" EXACT [] is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000690 ! discontinuous [Term] id: PATO:0000690 @@ -4235,6 +4314,7 @@ subset: value_slim synonym: "intermittent" RELATED [] synonym: "interrupted" EXACT [] is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000689 ! continuous [Term] id: PATO:0000692 @@ -4266,6 +4346,7 @@ name: synchronous def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase." [PATOC:GVG] subset: value_slim is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0000688 ! asynchronous [Term] id: PATO:0000696 @@ -4296,6 +4377,7 @@ subset: mpath_slim subset: value_slim synonym: "coarse" EXACT [] is_a: PATO:0000150 ! texture +relationship: is_opposite_of PATO:0000701 ! smooth [Term] id: PATO:0000701 @@ -4304,6 +4386,7 @@ def: "A texture quality inhering in a bearer by virtue of the bearer's processin subset: mpath_slim subset: value_slim is_a: PATO:0000150 ! texture +relationship: is_opposite_of PATO:0000700 ! rough [Term] id: PATO:0000702 @@ -4336,6 +4419,7 @@ subset: value_slim synonym: "high threshold" EXACT [] is_a: PATO:0000152 ! threshold is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0000708 ! decreased threshold [Term] id: PATO:0000708 @@ -4348,6 +4432,7 @@ subset: value_slim synonym: "low threshold" EXACT [] is_a: PATO:0000152 ! threshold is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0000706 ! increased threshold [Term] id: PATO:0000710 @@ -4587,6 +4672,7 @@ def: "A balance quality inhering in a bearer by virtue of the bearer's having ba subset: value_slim is_a: PATO:0000185 ! balance disjoint_from: PATO:0000758 ! unbalanced +relationship: is_opposite_of PATO:0000758 ! unbalanced [Term] id: PATO:0000758 @@ -4594,6 +4680,7 @@ name: unbalanced def: "A balance quality inhering in a bearer by virtue of the bearer's lacking balance." [PATOC:GVG] subset: value_slim is_a: PATO:0000185 ! balance +relationship: is_opposite_of PATO:0000757 ! balanced [Term] id: PATO:0000759 @@ -4612,6 +4699,7 @@ subset: value_slim synonym: "hyperactive" EXACT [] is_a: PATO:0001707 ! behavioural active is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0000761 ! decreased behavioural activity [Term] id: PATO:0000761 @@ -4621,6 +4709,7 @@ subset: value_slim synonym: "hypoactive" EXACT [] is_a: PATO:0001707 ! behavioural active is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0000760 ! increased behavioural activity [Term] id: PATO:0000762 @@ -4685,6 +4774,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000188 ! coordination disjoint_from: PATO:0000770 ! uncoordinated +relationship: is_opposite_of PATO:0000770 ! uncoordinated [Term] id: PATO:0000770 @@ -4693,6 +4783,7 @@ def: "A coordination quality of inhering in a bearer by virtue of the bearer's l subset: disposition_slim subset: value_slim is_a: PATO:0000188 ! coordination +relationship: is_opposite_of PATO:0000769 ! coordinated [Term] id: PATO:0000771 @@ -5300,6 +5391,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000277 ! female fertility disjoint_from: PATO:0000892 ! female sterile +relationship: is_opposite_of PATO:0000892 ! female sterile [Term] id: PATO:0000889 @@ -5315,6 +5407,7 @@ subset: value_slim synonym: "male infertile" RELATED [] is_a: PATO:0000956 ! sterile disjoint_from: PATO:0000891 ! male fertile +relationship: is_opposite_of PATO:0000891 ! male fertile [Term] id: PATO:0000891 @@ -5323,6 +5416,7 @@ def: "A male fertility quality inhering in a male by virtue of the bearer's bein subset: disposition_slim subset: value_slim is_a: PATO:0000279 ! male fertility +relationship: is_opposite_of PATO:0000890 ! male sterile [Term] id: PATO:0000892 @@ -5332,6 +5426,7 @@ subset: disposition_slim subset: value_slim synonym: "female infertile" RELATED [] is_a: PATO:0000956 ! sterile +relationship: is_opposite_of PATO:0000888 ! female fertile [Term] id: PATO:0000893 @@ -5436,6 +5531,7 @@ subset: value_slim synonym: "slow rate" EXACT [] is_a: PATO:0000161 ! rate is_a: PATO:0002302 ! decreased process quality +relationship: is_opposite_of PATO:0000912 ! increased rate [Term] id: PATO:0000912 @@ -5447,6 +5543,7 @@ synonym: "fast rate" EXACT [] synonym: "high rate" EXACT [] is_a: PATO:0000161 ! rate is_a: PATO:0002304 ! increased process quality +relationship: is_opposite_of PATO:0000911 ! decreased rate [Term] id: PATO:0000913 @@ -5594,6 +5691,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0002264 ! organization quality disjoint_from: PATO:0000938 ! organized +relationship: is_opposite_of PATO:0000938 ! organized [Term] id: PATO:0000938 @@ -5602,6 +5700,7 @@ def: "A structural quality inhering in a bearer by virtue of the bearer's exhibi subset: mpath_slim subset: value_slim is_a: PATO:0002264 ! organization quality +relationship: is_opposite_of PATO:0000937 ! disorganized [Term] id: PATO:0000939 @@ -5732,6 +5831,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000274 ! fertility disjoint_from: PATO:0000956 ! sterile +relationship: is_opposite_of PATO:0000956 ! sterile [Term] id: PATO:0000956 @@ -5740,6 +5840,7 @@ def: "A fertility quality inhering in a bearer by virtue of the bearer's being i subset: disposition_slim subset: value_slim is_a: PATO:0000274 ! fertility +relationship: is_opposite_of PATO:0000955 ! fertile [Term] id: PATO:0000957 @@ -5783,6 +5884,7 @@ synonym: "clouding" RELATED [] synonym: "cloudy" RELATED [] synonym: "non-transparent" EXACT [] is_a: PATO:0000957 ! opacity +relationship: is_opposite_of PATO:0000964 ! transparent [Term] id: PATO:0000964 @@ -5793,6 +5895,7 @@ subset: value_slim synonym: "clear" EXACT [] synonym: "hyaline" EXACT [] is_a: PATO:0000957 ! opacity +relationship: is_opposite_of PATO:0000963 ! opaque [Term] id: PATO:0000965 @@ -5913,6 +6016,7 @@ subset: value_slim synonym: "porous" RELATED [] is_a: PATO:0000970 ! permeability disjoint_from: PATO:0000983 ! impermeable +relationship: is_opposite_of PATO:0000983 ! impermeable [Term] id: PATO:0000983 @@ -5921,6 +6025,7 @@ def: "A permeability quality inhering in a bearer by virtue of the bearer's bein subset: disposition_slim subset: value_slim is_a: PATO:0000970 ! permeability +relationship: is_opposite_of PATO:0000982 ! permeable [Term] id: PATO:0000984 @@ -5930,6 +6035,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000973 ! porosity disjoint_from: PATO:0000985 ! non-porous +relationship: is_opposite_of PATO:0000985 ! non-porous [Term] id: PATO:0000985 @@ -5938,6 +6044,7 @@ def: "A porosity quality inhering in a bearer by virtue of the bearer's being in subset: disposition_slim subset: value_slim is_a: PATO:0000973 ! porosity +relationship: is_opposite_of PATO:0000984 ! porous [Term] id: PATO:0000986 @@ -6285,6 +6392,7 @@ subset: disposition_slim subset: relational_slim synonym: "susceptibility" EXACT [] is_a: PATO:0000085 ! sensitivity toward +relationship: is_opposite_of PATO:0001046 ! resistance to [Term] id: PATO:0001044 @@ -6306,6 +6414,7 @@ subset: relational_slim subset: scalar_slim synonym: "resistance" EXACT [] is_a: PATO:0001995 ! organismal quality +relationship: is_opposite_of PATO:0001043 ! susceptibility toward [Term] id: PATO:0001047 @@ -6857,6 +6966,7 @@ subset: value_slim synonym: "susceptible" EXACT [] is_a: PATO:0001043 ! susceptibility toward disjoint_from: PATO:0001153 ! insusceptible toward +relationship: is_opposite_of PATO:0001153 ! insusceptible toward [Term] id: PATO:0001153 @@ -6867,6 +6977,7 @@ subset: relational_slim subset: value_slim synonym: "insusceptible" EXACT [] is_a: PATO:0001043 ! susceptibility toward +relationship: is_opposite_of PATO:0001152 ! susceptible toward [Term] id: PATO:0001154 @@ -6874,6 +6985,7 @@ name: elongated def: "A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width." [WordNet:WordNet] subset: value_slim is_a: PATO:0000052 ! shape +relationship: is_opposite_of PATO:0002364 ! shortened [Term] id: PATO:0001155 @@ -6925,6 +7037,7 @@ subset: value_slim synonym: "high concentration" EXACT [] is_a: PATO:0001159 ! concentrated is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001163 ! decreased concentration [Term] id: PATO:0001163 @@ -6935,6 +7048,7 @@ subset: value_slim synonym: "low concentration" EXACT [] is_a: PATO:0001159 ! concentrated is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001162 ! increased concentration [Term] id: PATO:0001164 @@ -6961,6 +7075,7 @@ def: "A structural quality inhering in a bearer by virtue of the bearer being ha subset: value_slim is_a: PATO:0001020 ! damage disjoint_from: PATO:0001168 ! undamaged +relationship: is_opposite_of PATO:0001168 ! undamaged [Term] id: PATO:0001168 @@ -6968,6 +7083,7 @@ name: undamaged def: "A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled." [WordNet:WordNet] subset: value_slim is_a: PATO:0001020 ! damage +relationship: is_opposite_of PATO:0001167 ! damaged [Term] id: PATO:0001170 @@ -6983,6 +7099,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0001031 ! elasticity disjoint_from: PATO:0001172 ! inelastic +relationship: is_opposite_of PATO:0001172 ! inelastic [Term] id: PATO:0001172 @@ -6992,6 +7109,7 @@ subset: disposition_slim subset: mpath_slim subset: value_slim is_a: PATO:0001031 ! elasticity +relationship: is_opposite_of PATO:0001171 ! elastic [Term] id: PATO:0001173 @@ -7122,6 +7240,7 @@ synonym: "hyperresponsive" EXACT [] synonym: "increased responsivity" EXACT [] is_a: PATO:0000487 ! responsive to is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001194 ! hyporesponsive to [Term] id: PATO:0001193 @@ -7144,6 +7263,7 @@ synonym: "decreased responsivity" EXACT [] synonym: "hyporesponsive" EXACT [] is_a: PATO:0000487 ! responsive to is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001192 ! hyperresponsive to [Term] id: PATO:0001195 @@ -7225,6 +7345,7 @@ subset: mpath_slim subset: value_slim synonym: "serrate" EXACT [] is_a: PATO:0001976 ! serration +relationship: is_opposite_of PATO:0001975 ! unserrated [Term] id: PATO:0001207 @@ -7332,6 +7453,7 @@ subset: relational_slim subset: value_slim synonym: "variable" EXACT [] is_a: PATO:0001303 ! variability +relationship: is_opposite_of PATO:0000438 ! invariant [Term] id: PATO:0001228 @@ -7346,6 +7468,7 @@ subset: value_slim synonym: "bright" EXACT [] synonym: "vivid" RELATED [] is_a: PATO:0000017 ! color saturation +relationship: is_opposite_of PATO:0000328 ! low saturation [Term] id: PATO:0001230 @@ -7375,6 +7498,7 @@ synonym: "dorsal" EXACT [] synonym: "posterior_to (human torso)" EXACT [] synonym: "superior_to (human head)" EXACT [] is_a: PATO:0000140 ! position +relationship: is_opposite_of PATO:0001234 ! distal to [Term] id: PATO:0001234 @@ -7385,6 +7509,7 @@ subset: relational_slim subset: value_slim synonym: "distal" EXACT [] is_a: PATO:0000140 ! position +relationship: is_opposite_of PATO:0001233 ! dorsal to [Term] id: PATO:0001235 @@ -7919,6 +8044,7 @@ synonym: "high temperature" EXACT [] synonym: "hot" EXACT [] is_a: PATO:0000146 ! temperature is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001306 ! decreased temperature [Term] id: PATO:0001306 @@ -7930,6 +8056,7 @@ synonym: "cold" EXACT [] synonym: "low temperature" EXACT [] is_a: PATO:0000146 ! temperature is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001305 ! increased temperature [Term] id: PATO:0001307 @@ -7939,6 +8066,7 @@ subset: value_slim synonym: "low variability of temperature" EXACT [] is_a: PATO:0001314 ! variant temperature is_a: PATO:0002301 ! decreased quality +relationship: is_opposite_of PATO:0001308 ! increased variability of temperature [Term] id: PATO:0001308 @@ -7948,6 +8076,7 @@ subset: value_slim synonym: "high variability of temperature" EXACT [] is_a: PATO:0001314 ! variant temperature is_a: PATO:0002300 ! increased quality +relationship: is_opposite_of PATO:0001307 ! decreased variability of temperature [Term] id: PATO:0001309 @@ -7975,6 +8104,7 @@ def: "A duration of temperature which is lesser relative to the normal or averag subset: value_slim is_a: PATO:0000499 ! decreased duration is_a: PATO:0001310 ! duration of temperature +relationship: is_opposite_of PATO:0001312 ! increased duration of temperature [Term] id: PATO:0001312 @@ -7984,6 +8114,7 @@ subset: value_slim synonym: "high duration of temperature" EXACT [] is_a: PATO:0000498 ! increased duration is_a: PATO:0001310 ! duration of temperature +relationship: is_opposite_of PATO:0001311 ! decreased duration of temperature [Term] id: PATO:0001313 @@ -7991,6 +8122,7 @@ name: invariant temperature def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature." [PATO:GVG] subset: relational_slim is_a: PATO:0001304 ! variability of temperature +relationship: is_opposite_of PATO:0001314 ! variant temperature [Term] id: PATO:0001314 @@ -7998,6 +8130,7 @@ name: variant temperature def: "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature." [PATO:GVG] subset: value_slim is_a: PATO:0001304 ! variability of temperature +relationship: is_opposite_of PATO:0001313 ! invariant temperature [Term] id: PATO:0001315 @@ -8029,6 +8162,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0000189 ! discrimination disjoint_from: PATO:0001319 ! discriminate +relationship: is_opposite_of PATO:0001319 ! discriminate [Term] id: PATO:0001319 @@ -8038,6 +8172,7 @@ subset: disposition_slim subset: relational_slim subset: value_slim is_a: PATO:0000189 ! discrimination +relationship: is_opposite_of PATO:0001318 ! indiscriminate [Term] id: PATO:0001320 @@ -8326,6 +8461,7 @@ def: "A shape quality that obtains by virtue of the bearer having inward facing subset: cell_quality subset: value_slim is_a: PATO:0002005 ! concavity +relationship: is_opposite_of PATO:0001857 ! concave [Term] id: PATO:0001356 @@ -8386,6 +8522,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001662 ! fragility disjoint_from: PATO:0001716 ! non-fragile +relationship: is_opposite_of PATO:0001716 ! non-fragile [Term] id: PATO:0001364 @@ -8781,6 +8918,7 @@ name: structured def: "A structural quality inhering in a bearer by virtue of the bearer's having distinct structure." [PATOC:GVG] subset: value_slim is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0001412 ! unstructured [Term] id: PATO:0001412 @@ -8788,6 +8926,7 @@ name: unstructured def: "A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure." [PATOC:GVG] subset: value_slim is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0001411 ! structured [Term] id: PATO:0001413 @@ -8819,6 +8958,7 @@ name: regular duration def: "A duration which has regular start and/or end times." [PATOC:GVG] subset: value_slim is_a: PATO:0001309 ! duration +relationship: is_opposite_of PATO:0001417 ! irregular duration [Term] id: PATO:0001417 @@ -8826,6 +8966,7 @@ name: irregular duration def: "A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times." [PATOC:melissa] subset: value_slim is_a: PATO:0001309 ! duration +relationship: is_opposite_of PATO:0001416 ! regular duration [Term] id: PATO:0001418 @@ -9138,6 +9279,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001454 ! sensitivity to oxygen disjoint_from: PATO:0001456 ! anaerobic +relationship: is_opposite_of PATO:0001456 ! anaerobic [Term] id: PATO:0001456 @@ -9146,6 +9288,7 @@ def: "A quality inhering in a bearer by virtue of the bearer's independence on o subset: disposition_slim subset: value_slim is_a: PATO:0001454 ! sensitivity to oxygen +relationship: is_opposite_of PATO:0001455 ! aerobic [Term] id: PATO:0001457 @@ -9173,6 +9316,7 @@ def: "A sensitivity of a process inhering in a biological process by virtue of t subset: disposition_slim subset: value_slim is_a: PATO:0001458 ! sensitivity of a process to oxygen +relationship: is_opposite_of PATO:0001460 ! anaerobic (for occurrence) [Term] id: PATO:0001460 @@ -9181,6 +9325,7 @@ def: "A sensitivity of a process inhering in a biological process by virtue of t subset: disposition_slim subset: value_slim is_a: PATO:0001458 ! sensitivity of a process to oxygen +relationship: is_opposite_of PATO:0001459 ! aerobic (for occurrence) [Term] id: PATO:0001461 @@ -9282,6 +9427,7 @@ synonym: "low depth" EXACT [] synonym: "shallow" EXACT [] is_a: PATO:0000587 ! decreased size is_a: PATO:0001595 ! depth +relationship: is_opposite_of PATO:0001596 ! increased depth [Term] id: PATO:0001473 @@ -9308,6 +9454,7 @@ subset: value_slim synonym: "high position" RELATED [] is_a: PATO:0000140 ! position is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001476 ! decreased position [Term] id: PATO:0001476 @@ -9317,6 +9464,7 @@ subset: value_slim synonym: "low position" RELATED [] is_a: PATO:0000140 ! position is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001475 ! increased position [Term] id: PATO:0001477 @@ -9390,6 +9538,7 @@ synonym: "compressed" EXACT [] synonym: "dense" RELATED [] synonym: "squashed" EXACT [] is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0002452 ! decondensed [Term] id: PATO:0001486 @@ -9445,6 +9594,7 @@ name: hypertrophic growth comment: This term will be obsoleted; Use GO:growth and PATO:rate. subset: value_slim is_a: PATO:0001492 ! growth rate +relationship: is_opposite_of PATO:0001494 ! hypotrophic growth [Term] id: PATO:0001494 @@ -9452,6 +9602,7 @@ name: hypotrophic growth comment: This term will be obsoleted; Use GO:growth and PATO:rate. subset: value_slim is_a: PATO:0001492 ! growth rate +relationship: is_opposite_of PATO:0001493 ! hypertrophic growth [Term] id: PATO:0001495 @@ -9507,6 +9658,7 @@ def: "A quality inhering in a bearer by virtue of the bearer's lacking complete subset: value_slim synonym: "underdeveloped" RELATED [] is_a: PATO:0000261 ! maturity +relationship: is_opposite_of PATO:0001701 ! mature [Term] id: PATO:0001502 @@ -9576,6 +9728,7 @@ def: "A functionality quality held by the bearer when the latter is able to perf subset: disposition_slim subset: value_slim is_a: PATO:0001509 ! functionality +relationship: is_opposite_of PATO:0001511 ! non-functional [Term] id: PATO:0001511 @@ -9589,6 +9742,7 @@ synonym: "disfunctional" EXACT [] synonym: "failure" RELATED [] synonym: "functional failure" EXACT [] is_a: PATO:0001509 ! functionality +relationship: is_opposite_of PATO:0001510 ! functional [Term] id: PATO:0001512 @@ -9790,6 +9944,7 @@ subset: value_slim synonym: "soluble" EXACT [] is_a: PATO:0001536 ! solubility disjoint_from: PATO:0001538 ! insoluble in +relationship: is_opposite_of PATO:0001538 ! insoluble in [Term] id: PATO:0001538 @@ -9800,6 +9955,7 @@ subset: relational_slim subset: value_slim synonym: "insoluble" EXACT [] is_a: PATO:0001536 ! solubility +relationship: is_opposite_of PATO:0001537 ! soluble in [Term] id: PATO:0001539 @@ -9847,6 +10003,7 @@ subset: disposition_slim subset: value_slim synonym: "bendy" EXACT [] is_a: PATO:0001543 ! flexibility +relationship: is_opposite_of PATO:0001545 ! inflexible [Term] id: PATO:0001545 @@ -9857,6 +10014,7 @@ subset: value_slim synonym: "stiff" EXACT [] synonym: "stiffness" RELATED [] is_a: PATO:0001543 ! flexibility +relationship: is_opposite_of PATO:0001544 ! flexible [Term] id: PATO:0001546 @@ -9893,6 +10051,7 @@ synonym: "high sensitivity toward" EXACT [] synonym: "increased sensitivity" EXACT [] is_a: PATO:0000516 ! sensitive toward is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001550 ! decreased sensitivity toward [Term] id: PATO:0001550 @@ -9905,6 +10064,7 @@ synonym: "decreased sensitivity" EXACT [] synonym: "low sensitivity toward" EXACT [] is_a: PATO:0000516 ! sensitive toward is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001549 ! increased sensitivity toward [Term] id: PATO:0001551 @@ -9916,6 +10076,7 @@ synonym: "high sensitivity of occurrent" EXACT [] synonym: "increased sensitivity of occurrent" EXACT [] is_a: PATO:0001457 ! sensitivity of a process is_a: PATO:0002304 ! increased process quality +relationship: is_opposite_of PATO:0001552 ! decreased sensitivity of a process [Term] id: PATO:0001552 @@ -9927,6 +10088,7 @@ synonym: "decreased sensitivity of occurrent" EXACT [] synonym: "low sensitivity of occurrent" EXACT [] is_a: PATO:0001457 ! sensitivity of a process is_a: PATO:0002302 ! decreased process quality +relationship: is_opposite_of PATO:0001551 ! increased sensitivity of a process [Term] id: PATO:0001553 @@ -9937,6 +10099,7 @@ subset: value_slim synonym: "high sensitivity of occurrent to oxygen" EXACT [] is_a: PATO:0001459 ! aerobic (for occurrence) is_a: PATO:0001551 ! increased sensitivity of a process +relationship: is_opposite_of PATO:0001554 ! decreased sensitivity of a process to oxygen [Term] id: PATO:0001554 @@ -9947,6 +10110,7 @@ subset: value_slim synonym: "low sensitivity of occurrent to oxygen" EXACT [] is_a: PATO:0001459 ! aerobic (for occurrence) is_a: PATO:0001552 ! decreased sensitivity of a process +relationship: is_opposite_of PATO:0001553 ! increased sensitivity of a process to oxygen [Term] id: PATO:0001555 @@ -10002,6 +10166,7 @@ synonym: "low mass" EXACT [] synonym: "small mass" EXACT [] is_a: PATO:0000125 ! mass is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001563 ! increased mass [Term] id: PATO:0001563 @@ -10013,6 +10178,7 @@ synonym: "high mass" EXACT [] synonym: "large mass" EXACT [] is_a: PATO:0000125 ! mass is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001562 ! decreased mass [Term] id: PATO:0001564 @@ -10032,6 +10198,7 @@ synonym: "diffuse" EXACT [] synonym: "scattered" EXACT [] is_a: PATO:0000060 ! spatial pattern disjoint_from: PATO:0001629 ! aggregated +relationship: is_opposite_of PATO:0001567 ! undistributed [Term] id: PATO:0001567 @@ -10039,6 +10206,7 @@ name: undistributed def: "A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up." [WordNet:WordNet] subset: value_slim is_a: PATO:0000060 ! spatial pattern +relationship: is_opposite_of PATO:0001566 ! distributed [Term] id: PATO:0001570 @@ -10080,6 +10248,7 @@ subset: value_slim synonym: "low pressure" EXACT [] is_a: PATO:0001025 ! pressure is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001576 ! increased pressure [Term] id: PATO:0001576 @@ -10089,6 +10258,7 @@ subset: value_slim synonym: "high pressure" EXACT [] is_a: PATO:0001025 ! pressure is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001575 ! decreased pressure [Term] id: PATO:0001577 @@ -10099,6 +10269,7 @@ subset: value_slim synonym: "high permeability" EXACT [] is_a: PATO:0000982 ! permeable is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001578 ! decreased permeability [Term] id: PATO:0001578 @@ -10109,6 +10280,7 @@ subset: value_slim synonym: "low permeability" EXACT [] is_a: PATO:0000982 ! permeable is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001577 ! increased permeability [Term] id: PATO:0001579 @@ -10128,6 +10300,7 @@ subset: value_slim synonym: "high contractility" EXACT [] is_a: PATO:0001690 ! contractile is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001581 ! decreased contractility [Term] id: PATO:0001581 @@ -10138,6 +10311,7 @@ subset: value_slim synonym: "low contractility" EXACT [] is_a: PATO:0001690 ! contractile is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001580 ! increased contractility [Term] id: PATO:0001582 @@ -10154,6 +10328,7 @@ subset: value_slim synonym: "low variability" EXACT [] is_a: PATO:0001227 ! variant is_a: PATO:0002301 ! decreased quality +relationship: is_opposite_of PATO:0001584 ! increased variability [Term] id: PATO:0001584 @@ -10163,6 +10338,7 @@ subset: value_slim synonym: "high variability" EXACT [] is_a: PATO:0001227 ! variant is_a: PATO:0002300 ! increased quality +relationship: is_opposite_of PATO:0001583 ! decreased variability [Term] id: PATO:0001585 @@ -10190,6 +10366,7 @@ subset: value_slim synonym: "high variability of rate" EXACT [] is_a: PATO:0001586 ! variability of rate is_a: PATO:0002300 ! increased quality +relationship: is_opposite_of PATO:0001588 ! decreased variability of rate [Term] id: PATO:0001588 @@ -10199,6 +10376,7 @@ subset: value_slim synonym: "low variability of rate" EXACT [] is_a: PATO:0001586 ! variability of rate is_a: PATO:0002301 ! decreased quality +relationship: is_opposite_of PATO:0001587 ! increased variability of rate [Term] id: PATO:0001589 @@ -10231,6 +10409,7 @@ def: "A curvature which is relatively high." [PATO:GVG] subset: value_slim is_a: PATO:0000406 ! curved is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001593 ! decreased curvature [Term] id: PATO:0001593 @@ -10239,6 +10418,7 @@ def: "A curvature which is relatively low." [PATO:GVG] subset: value_slim is_a: PATO:0000406 ! curved is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001592 ! increased curvature [Term] id: PATO:0001594 @@ -10264,6 +10444,7 @@ subset: value_slim synonym: "deep" EXACT [] is_a: PATO:0000586 ! increased size is_a: PATO:0001595 ! depth +relationship: is_opposite_of PATO:0001472 ! decreased depth [Term] id: PATO:0001597 @@ -10324,6 +10505,7 @@ def: "A life span which is relatively high." [PATO:GVG] synonym: "high life span" EXACT [] is_a: PATO:0000050 ! life span is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001604 ! decreased life span [Term] id: PATO:0001604 @@ -10332,6 +10514,7 @@ def: "A life span which is relatively low." [PATO:GVG] synonym: "low life span" EXACT [] is_a: PATO:0000050 ! life span is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001603 ! increased life span [Term] id: PATO:0001605 @@ -10389,6 +10572,7 @@ subset: value_slim synonym: "high variability of color" EXACT [] is_a: PATO:0001615 ! variant color is_a: PATO:0002300 ! increased quality +relationship: is_opposite_of PATO:0001613 ! decreased variability of color [Term] id: PATO:0001613 @@ -10398,6 +10582,7 @@ subset: value_slim synonym: "low variability of color" EXACT [] is_a: PATO:0001615 ! variant color is_a: PATO:0002301 ! decreased quality +relationship: is_opposite_of PATO:0001612 ! increased variability of color [Term] id: PATO:0001614 @@ -10405,6 +10590,7 @@ name: invariant color def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color." [PATO:GVG] subset: value_slim is_a: PATO:0001611 ! variability of color +relationship: is_opposite_of PATO:0001615 ! variant color [Term] id: PATO:0001615 @@ -10412,6 +10598,7 @@ name: variant color def: "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour." [PATO:GVG] subset: value_slim is_a: PATO:0001611 ! variability of color +relationship: is_opposite_of PATO:0001614 ! invariant color [Term] id: PATO:0001617 @@ -10431,6 +10618,7 @@ subset: value_slim synonym: "high tonicity" EXACT [] is_a: PATO:0001439 ! tonicity is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001619 ! decreased tonicity [Term] id: PATO:0001619 @@ -10441,6 +10629,7 @@ subset: value_slim synonym: "low tonicity" EXACT [] is_a: PATO:0001439 ! tonicity is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001618 ! increased tonicity [Term] id: PATO:0001620 @@ -10459,6 +10648,7 @@ subset: value_slim synonym: "low turgor" EXACT [] is_a: PATO:0001620 ! turgor is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001622 ! increased turgor [Term] id: PATO:0001622 @@ -10469,6 +10659,7 @@ subset: value_slim synonym: "high turgor" EXACT [] is_a: PATO:0001620 ! turgor is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001621 ! decreased turgor [Term] id: PATO:0001623 @@ -10498,6 +10689,7 @@ synonym: "low functionality" EXACT [] synonym: "partial functionality" EXACT [] is_a: PATO:0001510 ! functional is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001625 ! increased functionality [Term] id: PATO:0001625 @@ -10508,6 +10700,7 @@ subset: value_slim synonym: "high functionality" EXACT [] is_a: PATO:0001510 ! functional is_a: PATO:0001559 ! having extra function +relationship: is_opposite_of PATO:0001624 ! decreased functionality [Term] id: PATO:0001626 @@ -10525,6 +10718,7 @@ def: "A wholeness quality inhering in a bearer by virtue of the bearer's has eno subset: value_slim synonym: "adequate" RELATED [] is_a: PATO:0001626 ! sufficiency +relationship: is_opposite_of PATO:0001628 ! insufficient [Term] id: PATO:0001628 @@ -10533,6 +10727,7 @@ def: "A wholeness quality inhering in a bearer by virtue of the bearer's lacks e subset: value_slim synonym: "inadequate" RELATED [] is_a: PATO:0001626 ! sufficiency +relationship: is_opposite_of PATO:0001627 ! sufficient [Term] id: PATO:0001629 @@ -10588,6 +10783,7 @@ def: "A necessity quality (continuant) inhering in a bearer by virtue of the bea subset: value_slim is_a: PATO:0001634 ! necessity (continuant) disjoint_from: PATO:0001636 ! unnecessary (continuant) +relationship: is_opposite_of PATO:0001636 ! unnecessary (continuant) [Term] id: PATO:0001636 @@ -10595,6 +10791,7 @@ name: unnecessary (continuant) def: "A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable." [WordNet:WordNet] subset: value_slim is_a: PATO:0001634 ! necessity (continuant) +relationship: is_opposite_of PATO:0001635 ! necessary (continuant) [Term] id: PATO:0001637 @@ -10609,6 +10806,7 @@ name: necessary (occurrent) def: "A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable." [PATO:GVG] subset: value_slim is_a: PATO:0001637 ! necessity of occurrent +relationship: is_opposite_of PATO:0001639 ! unnecessary (occurrent) [Term] id: PATO:0001639 @@ -10616,6 +10814,7 @@ name: unnecessary (occurrent) def: "A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable." [PATO:GVG] subset: value_slim is_a: PATO:0001637 ! necessity of occurrent +relationship: is_opposite_of PATO:0001638 ! necessary (occurrent) [Term] id: PATO:0001643 @@ -10669,6 +10868,7 @@ synonym: "high resistance to" EXACT [] synonym: "increased resistance" EXACT [] is_a: PATO:0001178 ! resistant to is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001651 ! decreased resistance to [Term] id: PATO:0001651 @@ -10681,6 +10881,7 @@ synonym: "decreased resistance" EXACT [] synonym: "low resistance to" EXACT [] is_a: PATO:0001178 ! resistant to is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001650 ! increased resistance to [Term] id: PATO:0001652 @@ -10700,6 +10901,7 @@ subset: value_slim synonym: "aligned" EXACT [] synonym: "aligned to" RELATED [] is_a: PATO:0001652 ! alignment +relationship: is_opposite_of PATO:0001654 ! misaligned with [Term] id: PATO:0001654 @@ -10710,6 +10912,7 @@ subset: value_slim synonym: "misaligned" EXACT [] synonym: "unaligned with" EXACT [] is_a: PATO:0001652 ! alignment +relationship: is_opposite_of PATO:0001653 ! aligned with [Term] id: PATO:0001655 @@ -10729,6 +10932,7 @@ subset: value_slim synonym: "low osmolarity" EXACT [] is_a: PATO:0001655 ! osmolarity is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001657 ! increased osmolarity [Term] id: PATO:0001657 @@ -10739,6 +10943,7 @@ subset: value_slim synonym: "high osmolarity" EXACT [] is_a: PATO:0001655 ! osmolarity is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001656 ! decreased osmolarity [Term] id: PATO:0001658 @@ -10792,6 +10997,7 @@ subset: value_slim synonym: "high solubility" EXACT [] is_a: PATO:0001537 ! soluble in is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001664 ! decreased solubility [Term] id: PATO:0001664 @@ -10803,6 +11009,7 @@ subset: value_slim synonym: "low solubility" EXACT [] is_a: PATO:0001537 ! soluble in is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001663 ! increased solubility [Term] id: PATO:0001665 @@ -10847,6 +11054,7 @@ synonym: "high susceptibility toward" EXACT [] synonym: "increased susceptibility" EXACT [] is_a: PATO:0001152 ! susceptible toward is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001670 ! decreased susceptibility toward [Term] id: PATO:0001670 @@ -10859,6 +11067,7 @@ synonym: "decreased susceptibility" EXACT [] synonym: "low susceptibility toward" EXACT [] is_a: PATO:0001152 ! susceptible toward is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001669 ! increased susceptibility toward [Term] id: PATO:0001671 @@ -10868,6 +11077,7 @@ subset: value_slim synonym: "high distribution" EXACT [] is_a: PATO:0001475 ! increased position is_a: PATO:0001566 ! distributed +relationship: is_opposite_of PATO:0001672 ! decreased distribution [Term] id: PATO:0001672 @@ -10877,6 +11087,7 @@ subset: value_slim synonym: "low distribution" EXACT [] is_a: PATO:0001476 ! decreased position is_a: PATO:0001566 ! distributed +relationship: is_opposite_of PATO:0001671 ! increased distribution [Term] id: PATO:0001673 @@ -10904,6 +11115,7 @@ subset: value_slim synonym: "low efficiency" EXACT [] is_a: PATO:0001678 ! efficient is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001676 ! increased efficiency [Term] id: PATO:0001676 @@ -10913,6 +11125,7 @@ subset: value_slim synonym: "high efficiency" EXACT [] is_a: PATO:0001678 ! efficient is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001675 ! decreased efficiency [Term] id: PATO:0001677 @@ -10921,6 +11134,7 @@ def: "An efficiency quality inhering in a bearer by virtue of the bearer's lacki subset: value_slim is_a: PATO:0001029 ! efficiency disjoint_from: PATO:0001678 ! efficient +relationship: is_opposite_of PATO:0001678 ! efficient [Term] id: PATO:0001678 @@ -10928,6 +11142,7 @@ name: efficient def: "An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency." [PATOC:GVG] subset: value_slim is_a: PATO:0001029 ! efficiency +relationship: is_opposite_of PATO:0001677 ! inefficient [Term] id: PATO:0001679 @@ -10972,6 +11187,7 @@ subset: value_slim synonym: "high magnetism" EXACT [] is_a: PATO:0001685 ! magnetic is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001684 ! decreased magnetism [Term] id: PATO:0001684 @@ -10982,6 +11198,7 @@ subset: value_slim synonym: "low magnetism" EXACT [] is_a: PATO:0001685 ! magnetic is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001683 ! increased magnetism [Term] id: PATO:0001685 @@ -10991,6 +11208,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001682 ! magnetism disjoint_from: PATO:0001686 ! non-magnetic +relationship: is_opposite_of PATO:0001686 ! non-magnetic [Term] id: PATO:0001686 @@ -10999,6 +11217,7 @@ def: "A magnetic quality inhering in a bearer by virtue of the bearer's inabilit subset: disposition_slim subset: value_slim is_a: PATO:0001682 ! magnetism +relationship: is_opposite_of PATO:0001685 ! magnetic [Term] id: PATO:0001687 @@ -11016,6 +11235,7 @@ synonym: "elevated" RELATED [] synonym: "high elevation" EXACT [] is_a: PATO:0001475 ! increased position is_a: PATO:0001687 ! elevation +relationship: is_opposite_of PATO:0001689 ! decreased elevation [Term] id: PATO:0001689 @@ -11025,6 +11245,7 @@ subset: value_slim synonym: "low elevation" EXACT [] is_a: PATO:0001476 ! decreased position is_a: PATO:0001687 ! elevation +relationship: is_opposite_of PATO:0001688 ! increased elevation [Term] id: PATO:0001690 @@ -11035,6 +11256,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001579 ! contractility disjoint_from: PATO:0001691 ! non-contractile +relationship: is_opposite_of PATO:0001691 ! non-contractile [Term] id: PATO:0001691 @@ -11044,6 +11266,7 @@ comment: This refers to the disposition of the bearer. subset: disposition_slim subset: value_slim is_a: PATO:0001579 ! contractility +relationship: is_opposite_of PATO:0001690 ! contractile [Term] id: PATO:0001693 @@ -11054,6 +11277,7 @@ subset: value_slim synonym: "high viscosity" EXACT [] is_a: PATO:0000998 ! viscous is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001694 ! decreased viscosity [Term] id: PATO:0001694 @@ -11064,6 +11288,7 @@ subset: value_slim synonym: "low viscosity" EXACT [] is_a: PATO:0000998 ! viscous is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001693 ! increased viscosity [Term] id: PATO:0001695 @@ -11074,6 +11299,7 @@ subset: value_slim synonym: "high fecundity" EXACT [] is_a: PATO:0000273 ! fecundity is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001696 ! decreased fecundity [Term] id: PATO:0001696 @@ -11084,6 +11310,7 @@ subset: value_slim synonym: "low fecundity" EXACT [] is_a: PATO:0000273 ! fecundity is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001695 ! increased fecundity [Term] id: PATO:0001697 @@ -11095,6 +11322,7 @@ subset: value_slim synonym: "low photosensitivity" EXACT [] is_a: PATO:0000547 ! photosensitive is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001698 ! increased photosensitivity [Term] id: PATO:0001698 @@ -11106,6 +11334,7 @@ subset: value_slim synonym: "high photosensitivity" EXACT [] is_a: PATO:0000547 ! photosensitive is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001697 ! decreased photosensitivity [Term] id: PATO:0001699 @@ -11113,6 +11342,7 @@ name: regular sleep pattern def: "A sleep pattern which has regular start and/or end times." [PATOC:GVG] subset: value_slim is_a: PATO:0000062 ! sleep pattern +relationship: is_opposite_of PATO:0001700 ! irregular sleep pattern [Term] id: PATO:0001700 @@ -11120,6 +11350,7 @@ name: irregular sleep pattern def: "A sleep pattern which has irregular start and/or end times." [PATOC:GVG] subset: value_slim is_a: PATO:0000062 ! sleep pattern +relationship: is_opposite_of PATO:0001699 ! regular sleep pattern [Term] id: PATO:0001701 @@ -11127,6 +11358,7 @@ name: mature def: "A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] subset: value_slim is_a: PATO:0000261 ! maturity +relationship: is_opposite_of PATO:0001501 ! immature [Term] id: PATO:0001702 @@ -11168,6 +11400,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002265 ! behavioural activity disjoint_from: PATO:0001707 ! behavioural active +relationship: is_opposite_of PATO:0001707 ! behavioural active [Term] id: PATO:0001707 @@ -11175,6 +11408,7 @@ name: behavioural active def: "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity." [PATOC:GVG] subset: value_slim is_a: PATO:0002265 ! behavioural activity +relationship: is_opposite_of PATO:0001706 ! behavioural inactive [Term] id: PATO:0001708 @@ -11215,6 +11449,7 @@ def: "A perimeter which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0000573 ! increased length is_a: PATO:0001711 ! perimeter +relationship: is_opposite_of PATO:0001713 ! decreased perimeter [Term] id: PATO:0001713 @@ -11223,6 +11458,7 @@ def: "A perimeter which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0000574 ! decreased length is_a: PATO:0001711 ! perimeter +relationship: is_opposite_of PATO:0001712 ! increased perimeter [Term] id: PATO:0001714 @@ -11231,6 +11467,7 @@ def: "A diameter which is relatively large." [PATOC:GVG] subset: value_slim is_a: PATO:0000573 ! increased length is_a: PATO:0001334 ! diameter +relationship: is_opposite_of PATO:0001715 ! decreased diameter [Term] id: PATO:0001715 @@ -11239,6 +11476,7 @@ def: "A diameter which is relatively small." [PATOC:GVG] subset: value_slim is_a: PATO:0000574 ! decreased length is_a: PATO:0001334 ! diameter +relationship: is_opposite_of PATO:0001714 ! increased diameter [Term] id: PATO:0001716 @@ -11250,6 +11488,7 @@ synonym: "resilient" RELATED [] synonym: "strong" RELATED [] synonym: "tough" RELATED [] is_a: PATO:0001662 ! fragility +relationship: is_opposite_of PATO:0001362 ! fragile [Term] id: PATO:0001717 @@ -11299,6 +11538,7 @@ subset: value_slim synonym: "high female receptivity" EXACT [] is_a: PATO:0001720 ! female receptivity is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001724 ! decreased female receptivity [Term] id: PATO:0001724 @@ -11309,6 +11549,7 @@ subset: value_slim synonym: "low female receptivity" EXACT [] is_a: PATO:0001720 ! female receptivity is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001723 ! increased female receptivity [Term] id: PATO:0001725 @@ -11319,6 +11560,7 @@ subset: value_slim synonym: "high male receptivity" EXACT [] is_a: PATO:0001721 ! male receptivity is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001726 ! decreased male receptivity [Term] id: PATO:0001726 @@ -11329,6 +11571,7 @@ subset: value_slim synonym: "low male receptivity" EXACT [] is_a: PATO:0001721 ! male receptivity is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001725 ! increased male receptivity [Term] id: PATO:0001727 @@ -11463,6 +11706,7 @@ subset: value_slim synonym: "high radioactivity" EXACT [] is_a: PATO:0001741 ! radioactive is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001743 ! decreased radioactivity [Term] id: PATO:0001743 @@ -11472,6 +11716,7 @@ subset: value_slim synonym: "low radioactivity" EXACT [] is_a: PATO:0001741 ! radioactive is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001742 ! increased radioactivity [Term] id: PATO:0001744 @@ -11522,6 +11767,7 @@ subset: value_slim synonym: "hypoplastic growth" EXACT [] synonym: "pedomorphic growth" EXACT [] is_a: PATO:0001490 ! heterochronic growth +relationship: is_opposite_of PATO:0001752 ! peramorphic growth [Term] id: PATO:0001750 @@ -11544,6 +11790,7 @@ def: "A heterochronic growth quality inhering in an organism, structure, or grou subset: attribute_slim synonym: "hyperplastic growth" EXACT [] is_a: PATO:0001490 ! heterochronic growth +relationship: is_opposite_of PATO:0001749 ! paedomorphic growth [Term] id: PATO:0001753 @@ -11609,6 +11856,7 @@ name: female semi-fertile subset: disposition_slim subset: value_slim is_a: PATO:0001767 ! semi-fertile +relationship: is_opposite_of PATO:0001763 ! female semi-sterile [Term] id: PATO:0001761 @@ -11616,6 +11864,7 @@ name: male semi-fertile subset: disposition_slim subset: value_slim is_a: PATO:0001767 ! semi-fertile +relationship: is_opposite_of PATO:0001762 ! male semi-sterile [Term] id: PATO:0001762 @@ -11623,6 +11872,7 @@ name: male semi-sterile subset: disposition_slim subset: value_slim is_a: PATO:0000279 ! male fertility +relationship: is_opposite_of PATO:0001761 ! male semi-fertile [Term] id: PATO:0001763 @@ -11630,6 +11880,7 @@ name: female semi-sterile subset: disposition_slim subset: value_slim is_a: PATO:0000277 ! female fertility +relationship: is_opposite_of PATO:0001760 ! female semi-fertile [Term] id: PATO:0001764 @@ -11639,6 +11890,7 @@ subset: value_slim synonym: "high age" EXACT [] is_a: PATO:0000011 ! age is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001765 ! decreased age [Term] id: PATO:0001765 @@ -11648,6 +11900,7 @@ subset: value_slim synonym: "low age" EXACT [] is_a: PATO:0000011 ! age is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001764 ! increased age [Term] id: PATO:0001766 @@ -11731,6 +11984,7 @@ subset: value_slim synonym: "high flexibility" EXACT [] is_a: PATO:0001544 ! flexible is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001777 ! decreased flexibility [Term] id: PATO:0001777 @@ -11741,6 +11995,7 @@ subset: value_slim synonym: "low flexibility" EXACT [] is_a: PATO:0001544 ! flexible is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001776 ! increased flexibility [Term] id: PATO:0001778 @@ -11750,6 +12005,7 @@ subset: value_slim synonym: "high strength" EXACT [] is_a: PATO:0001230 ! strength is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001779 ! decreased strength [Term] id: PATO:0001779 @@ -11759,6 +12015,7 @@ subset: value_slim synonym: "weak" EXACT [] is_a: PATO:0001230 ! strength is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001778 ! increased strength [Term] id: PATO:0001780 @@ -11784,6 +12041,7 @@ subset: value_slim synonym: "high intensity" EXACT [] is_a: PATO:0000049 ! intensity is_a: PATO:0002300 ! increased quality +relationship: is_opposite_of PATO:0001783 ! decreased intensity [Term] id: PATO:0001783 @@ -11793,6 +12051,7 @@ subset: value_slim synonym: "low intensity" EXACT [] is_a: PATO:0000049 ! intensity is_a: PATO:0002301 ! decreased quality +relationship: is_opposite_of PATO:0001782 ! increased intensity [Term] id: PATO:0001784 @@ -11845,6 +12104,7 @@ subset: value_slim synonym: "high density" EXACT [] is_a: PATO:0001164 ! dense is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001790 ! decreased mass density [Term] id: PATO:0001789 @@ -11863,6 +12123,7 @@ subset: value_slim synonym: "low density" EXACT [] is_a: PATO:0001164 ! dense is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001788 ! increased mass density [Term] id: PATO:0001791 @@ -11907,6 +12168,7 @@ subset: value_slim synonym: "high coiling" EXACT [] is_a: PATO:0000404 ! coiled is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001796 ! decreased coiling [Term] id: PATO:0001796 @@ -11917,6 +12179,7 @@ subset: value_slim synonym: "low coiling" EXACT [] is_a: PATO:0000404 ! coiled is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001795 ! increased coiling [Term] id: PATO:0001798 @@ -12004,6 +12267,7 @@ subset: value_slim synonym: "low sensitivity to irradiation" EXACT [] is_a: PATO:0001806 ! sensitivity to irradiation is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001808 ! increased sensitivity to irradiation [Term] id: PATO:0001808 @@ -12014,6 +12278,7 @@ subset: value_slim synonym: "high sensitivity to irradiation" EXACT [] is_a: PATO:0001806 ! sensitivity to irradiation is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001807 ! decreased sensitivity to irradiation [Term] id: PATO:0001809 @@ -12082,6 +12347,7 @@ subset: value_slim synonym: "high fatigability" EXACT [] is_a: PATO:0001779 ! decreased strength is_a: PATO:0001815 ! fatigability +relationship: is_opposite_of PATO:0001817 ! decreased fatigability [Term] id: PATO:0001817 @@ -12092,6 +12358,7 @@ subset: value_slim synonym: "low fatigability" EXACT [] is_a: PATO:0001778 ! increased strength is_a: PATO:0001815 ! fatigability +relationship: is_opposite_of PATO:0001816 ! increased fatigability [Term] id: PATO:0001818 @@ -12101,6 +12368,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0002026 ! non-progressive [Term] id: PATO:0001819 @@ -12119,6 +12387,7 @@ subset: mpath_slim subset: value_slim synonym: "unperforated" EXACT [] is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0002112 ! perforate [Term] id: PATO:0001822 @@ -12137,6 +12406,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0001822 ! wetness disjoint_from: PATO:0001824 ! dry +relationship: is_opposite_of PATO:0001824 ! dry [Term] id: PATO:0001824 @@ -12145,6 +12415,7 @@ def: "A wetness quality inhering in a bearer by virtue of the bearer's not being subset: mpath_slim subset: value_slim is_a: PATO:0001822 ! wetness +relationship: is_opposite_of PATO:0001823 ! wet [Term] id: PATO:0001825 @@ -12153,6 +12424,7 @@ def: "A wetness quality that is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0001823 ! wet is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001826 ! decreased wetness [Term] id: PATO:0001826 @@ -12162,6 +12434,7 @@ subset: value_slim synonym: "low wetness" EXACT [] is_a: PATO:0001823 ! wet is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001825 ! increased wetness [Term] id: PATO:0001827 @@ -12193,6 +12466,7 @@ subset: value_slim synonym: "low female fertility" EXACT [] is_a: PATO:0000888 ! female fertile is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001831 ! increased female fertility [Term] id: PATO:0001831 @@ -12203,6 +12477,7 @@ subset: value_slim synonym: "high female fertility" EXACT [] is_a: PATO:0000888 ! female fertile is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001830 ! decreased female fertility [Term] id: PATO:0001832 @@ -12213,6 +12488,7 @@ subset: value_slim synonym: "high male fertility" EXACT [] is_a: PATO:0000891 ! male fertile is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001833 ! decreased male fertility [Term] id: PATO:0001833 @@ -12223,6 +12499,7 @@ subset: value_slim synonym: "low male fertility" EXACT [] is_a: PATO:0000891 ! male fertile is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001832 ! increased male fertility [Term] id: PATO:0001834 @@ -12233,6 +12510,7 @@ subset: value_slim synonym: "low fertility" EXACT [] is_a: PATO:0000955 ! fertile is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001835 ! increased fertility [Term] id: PATO:0001835 @@ -12243,6 +12521,7 @@ subset: value_slim synonym: "high fertility" EXACT [] is_a: PATO:0000955 ! fertile is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001834 ! decreased fertility [Term] id: PATO:0001836 @@ -12260,6 +12539,7 @@ subset: value_slim synonym: "low flow" EXACT [] is_a: PATO:0002243 ! fluid flow rate is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001839 ! increased fluid flow [Term] id: PATO:0001839 @@ -12269,6 +12549,7 @@ subset: value_slim synonym: "high flow" EXACT [] is_a: PATO:0002243 ! fluid flow rate is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001838 ! decreased fluid flow [Term] id: PATO:0001841 @@ -12296,6 +12577,7 @@ subset: value_slim synonym: "low acidity" EXACT [] is_a: PATO:0001842 ! acidity is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001844 ! increased acidity [Term] id: PATO:0001844 @@ -12305,6 +12587,7 @@ subset: value_slim synonym: "high acidity" EXACT [] is_a: PATO:0001842 ! acidity is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001843 ! decreased acidity [Term] id: PATO:0001845 @@ -12417,6 +12700,7 @@ def: "A shape quality in a bearer by virtue of the bearer's curving inward." [Wo subset: cell_quality subset: value_slim is_a: PATO:0002005 ! concavity +relationship: is_opposite_of PATO:0001355 ! convex [Term] id: PATO:0001858 @@ -12434,6 +12718,7 @@ subset: value_slim synonym: "high coordination" EXACT [] is_a: PATO:0000769 ! coordinated is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001860 ! decreased coordination [Term] id: PATO:0001860 @@ -12444,6 +12729,7 @@ subset: value_slim synonym: "low coordination" EXACT [] is_a: PATO:0000769 ! coordinated is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001859 ! increased coordination [Term] id: PATO:0001861 @@ -12454,6 +12740,7 @@ subset: value_slim synonym: "fascicled" EXACT [] is_a: PATO:0002013 ! fasciculation disjoint_from: PATO:0001959 ! defasciculated +relationship: is_opposite_of PATO:0001959 ! defasciculated [Term] id: PATO:0001862 @@ -12472,6 +12759,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0001309 ! duration +relationship: is_opposite_of PATO:0000389 ! acute [Term] id: PATO:0001865 @@ -12668,6 +12956,7 @@ subset: attribute_slim subset: disposition_slim is_a: PATO:0001018 ! physical quality disjoint_from: PATO:0001886 ! hydrophilicity +relationship: is_opposite_of PATO:0001886 ! hydrophilicity [Term] id: PATO:0001885 @@ -12676,6 +12965,7 @@ def: "A quality inhering in a bearer by virtue of the bearer's lacking affinity subset: disposition_slim subset: value_slim is_a: PATO:0001884 ! hydrophobicity +relationship: is_opposite_of PATO:0001887 ! hydrophilic [Term] id: PATO:0001886 @@ -12684,6 +12974,7 @@ def: "A physical quality inhering in a bearer by virtue the bearer's disposition subset: attribute_slim subset: disposition_slim is_a: PATO:0001018 ! physical quality +relationship: is_opposite_of PATO:0001884 ! hydrophobicity [Term] id: PATO:0001887 @@ -12692,6 +12983,7 @@ def: "A quality inhering in a bearer by virtue of the bearer's disposition to ha subset: disposition_slim subset: value_slim is_a: PATO:0001886 ! hydrophilicity +relationship: is_opposite_of PATO:0001885 ! hydrophobic [Term] id: PATO:0001888 @@ -12742,6 +13034,7 @@ def: "An odor quality of having decreased odor." [PATOC:GVG] subset: value_slim is_a: PATO:0001331 ! odorous is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001893 ! increased odor [Term] id: PATO:0001893 @@ -12750,6 +13043,7 @@ def: "An odor quality of having increased odor." [PATOC:GVG] subset: value_slim is_a: PATO:0001331 ! odorous is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001892 ! decreased odor [Term] id: PATO:0001894 @@ -12771,6 +13065,7 @@ name: unlumenized def: "A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances." [PATOC:MAH] subset: value_slim is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0001897 ! lumenized [Term] id: PATO:0001897 @@ -12779,6 +13074,7 @@ def: "A structure quality inhering in a bearer by virtue of the bearer's having comment: See GO term: GO:0031974 membrane-enclosed lumen [DEF:"The enclosed volume within a sealed membrane or between two sealed membranes"]. subset: value_slim is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0001896 ! unlumenized [Term] id: PATO:0001898 @@ -12787,6 +13083,7 @@ def: "A circumference which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0001648 ! circumference is_a: PATO:0001712 ! increased perimeter +relationship: is_opposite_of PATO:0001899 ! decreased circumference [Term] id: PATO:0001899 @@ -12795,6 +13092,7 @@ def: "A circumference which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0001648 ! circumference is_a: PATO:0001713 ! decreased perimeter +relationship: is_opposite_of PATO:0001898 ! increased circumference [Term] id: PATO:0001900 @@ -12802,6 +13100,7 @@ name: front def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction +relationship: is_opposite_of PATO:0001901 ! back [Term] id: PATO:0001901 @@ -12809,6 +13108,7 @@ name: back def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction +relationship: is_opposite_of PATO:0001900 ! front [Term] id: PATO:0001902 @@ -12992,6 +13292,7 @@ subset: value_slim synonym: "high fluorescence" EXACT [] is_a: PATO:0001290 ! fluorescent is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0001927 ! decreased fluorescence [Term] id: PATO:0001927 @@ -13001,6 +13302,7 @@ subset: value_slim synonym: "low fluorescence" EXACT [] is_a: PATO:0001290 ! fluorescent is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0001926 ! increased fluorescence [Term] id: PATO:0001928 @@ -13025,6 +13327,7 @@ name: variant shape def: "A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape." [PATOC:GVG] subset: value_slim is_a: PATO:0001929 ! variability of shape +relationship: is_opposite_of PATO:0001931 ! invariant shape [Term] id: PATO:0001931 @@ -13032,6 +13335,7 @@ name: invariant shape def: "A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape." [PATOC:GVG] subset: value_slim is_a: PATO:0001929 ! variability of shape +relationship: is_opposite_of PATO:0001930 ! variant shape [Term] id: PATO:0001932 @@ -13228,6 +13532,7 @@ subset: value_slim synonym: "low variability of size" EXACT [] is_a: PATO:0001956 ! variability of size is_a: PATO:0002301 ! decreased quality +relationship: is_opposite_of PATO:0001958 ! increased variability of size [Term] id: PATO:0001958 @@ -13237,6 +13542,7 @@ subset: value_slim synonym: "high variability of size" EXACT [] is_a: PATO:0001956 ! variability of size is_a: PATO:0002300 ! increased quality +relationship: is_opposite_of PATO:0001957 ! decreased variability of size [Term] id: PATO:0001959 @@ -13244,6 +13550,7 @@ name: defasciculated def: "A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated." [PATOC:mw] subset: value_slim is_a: PATO:0002013 ! fasciculation +relationship: is_opposite_of PATO:0001861 ! fasciculated [Term] id: PATO:0001960 @@ -13358,6 +13665,7 @@ name: unserrated def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex." [ISBN:0881923214] subset: value_slim is_a: PATO:0001976 ! serration +relationship: is_opposite_of PATO:0001206 ! serrated [Term] id: PATO:0001976 @@ -13522,6 +13830,7 @@ synonym: "reduced" RELATED [] synonym: "subnumerary" RELATED [] is_a: PATO:0000467 ! present is_a: PATO:0002301 ! decreased quality +relationship: is_opposite_of PATO:0000470 ! increased amount [Term] id: PATO:0001998 @@ -13562,6 +13871,7 @@ synonym: "has decreased number of" EXACT [] synonym: "has fewer physical parts of type" EXACT [] is_a: PATO:0001999 ! lacks parts or has fewer parts of type is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0002002 ! has extra parts of type [Term] id: PATO:0002002 @@ -13577,6 +13887,7 @@ synonym: "having supernumerary physical parts" EXACT [] synonym: "increased number of" EXACT [] is_a: PATO:0002083 ! altered number of is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0002001 ! has fewer parts of type [Term] id: PATO:0002003 @@ -13618,6 +13929,7 @@ subset: attribute_slim xref: Image:http\://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png is_a: PATO:0002266 ! 3-D shape relationship: has_cross_section PATO:0002006 ! 2-D shape +relationship: is_opposite_of PATO:0002008 ! concave 3-D shape [Term] id: PATO:0002008 @@ -13627,6 +13939,7 @@ subset: attribute_slim xref: Image:http\://en.wikipedia.org/wiki/Image\:Convex_polygon_illustration2.png is_a: PATO:0002266 ! 3-D shape relationship: has_part PATO:0001857 ! concave +relationship: is_opposite_of PATO:0002007 ! convex 3-D shape [Term] id: PATO:0002009 @@ -13684,12 +13997,14 @@ id: PATO:0002017 name: increased magnitude synonym: "high magnitude" EXACT [] is_a: PATO:0002016 ! magnitude +relationship: is_opposite_of PATO:0002018 ! decreased magnitude [Term] id: PATO:0002018 name: decreased magnitude synonym: "low magnitude" EXACT [] is_a: PATO:0002016 ! magnitude +relationship: is_opposite_of PATO:0002017 ! increased magnitude [Term] id: PATO:0002019 @@ -13752,6 +14067,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence +relationship: is_opposite_of PATO:0001818 ! progressive created_by: george gkoutos creation_date: 2008-12-18T12:49:19Z @@ -13775,6 +14091,7 @@ subset: value_slim synonym: "low osmolality" EXACT [] is_a: PATO:0002027 ! osmolality is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0002029 ! increased osmolality created_by: george creation_date: 2009-01-27T10:55:33Z @@ -13787,6 +14104,7 @@ subset: value_slim synonym: "high osmolality" EXACT [] is_a: PATO:0002027 ! osmolality is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0002028 ! decreased osmolality created_by: george creation_date: 2009-01-27T10:56:19Z @@ -13878,6 +14196,7 @@ def: "A structural quality inhering in a bearer whose structure which does not d subset: value_slim synonym: "not degenerate" EXACT [] is_a: PATO:0002037 ! degeneration +relationship: is_opposite_of PATO:0000639 ! degenerate created_by: george creation_date: 2009-02-03T11:14:54Z @@ -13887,6 +14206,7 @@ name: biconcave def: "A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces." [PATOC:GVG] subset: value_slim is_a: PATO:0001857 ! concave +relationship: is_opposite_of PATO:0002040 ! biconvex [Term] id: PATO:0002040 @@ -13895,6 +14215,7 @@ def: "A shape quality inhering in a bearer by virtue of the bearer's being conve subset: value_slim xref: Image:http\://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx is_a: PATO:0001355 ! convex +relationship: is_opposite_of PATO:0002039 ! biconcave [Term] id: PATO:0002041 @@ -13912,6 +14233,7 @@ subset: value_slim synonym: "low anterior-posterior diameter" EXACT [] is_a: PATO:0001715 ! decreased diameter is_a: PATO:0002041 ! anterior-posterior diameter +relationship: is_opposite_of PATO:0002043 ! increased anterior-posterior diameter [Term] id: PATO:0002043 @@ -13921,6 +14243,7 @@ subset: value_slim synonym: "high anterior-posterior diameter" EXACT [] is_a: PATO:0001714 ! increased diameter is_a: PATO:0002041 ! anterior-posterior diameter +relationship: is_opposite_of PATO:0002042 ! decreased anterior-posterior diameter [Term] id: PATO:0002044 @@ -14000,6 +14323,7 @@ def: "An occurrence which is relatively high." [PATOC:GVG] synonym: "increased incidence" EXACT [] is_a: PATO:0000057 ! occurrence is_a: PATO:0002304 ! increased process quality +relationship: is_opposite_of PATO:0002052 ! decreased occurrence created_by: George Gkoutos creation_date: 2009-03-26T11:10:11Z @@ -14010,6 +14334,7 @@ def: "An occurrence which is relatively low." [PATOC:GVG] synonym: "decreased incidence" EXACT [] is_a: PATO:0000057 ! occurrence is_a: PATO:0002302 ! decreased process quality +relationship: is_opposite_of PATO:0002051 ! increased occurrence created_by: George Gkoutos creation_date: 2009-03-26T11:12:35Z @@ -14041,6 +14366,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001362 ! fragile is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0002056 ! decreased fragility created_by: George Gkoutos creation_date: 2009-03-26T04:01:37Z @@ -14052,6 +14378,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001362 ! fragile is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0002055 ! increased fragility created_by: George Gkoutos creation_date: 2009-03-26T04:02:14Z @@ -14062,6 +14389,7 @@ def: "An area which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0000586 ! increased size is_a: PATO:0001323 ! area +relationship: is_opposite_of PATO:0002058 ! decreased area created_by: George Gkoutos creation_date: 2009-03-30T04:11:43Z @@ -14072,6 +14400,7 @@ def: "An area which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0000587 ! decreased size is_a: PATO:0001323 ! area +relationship: is_opposite_of PATO:0002057 ! increased area created_by: George Gkoutos creation_date: 2009-03-30T04:12:11Z @@ -14160,6 +14489,7 @@ def: "A spatial pattern inhering in a bearer by virtue of the bearer's exhibitin subset: mpath_slim subset: value_slim is_a: PATO:0002067 ! stratification +relationship: is_opposite_of PATO:0002069 ! unstratified created_by: George Gkoutos creation_date: 2009-07-01T02:31:53Z @@ -14170,6 +14500,7 @@ def: "A spatial pattern inhering in a bearer by virtue of the bearer's lacking a subset: mpath_slim subset: value_slim is_a: PATO:0002067 ! stratification +relationship: is_opposite_of PATO:0002068 ! stratified created_by: George Gkoutos creation_date: 2009-07-01T02:33:41Z @@ -14194,6 +14525,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002070 ! affinity is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0002072 ! decreased affinity created_by: George Gkoutos creation_date: 2009-09-18T01:29:42Z @@ -14206,6 +14538,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002070 ! affinity is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0002071 ! increased affinity created_by: George Gkoutos creation_date: 2009-09-18T01:30:11Z @@ -14230,6 +14563,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002073 ! avidity is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0002075 ! decreased avidity created_by: George Gkoutos creation_date: 2009-09-18T01:45:56Z @@ -14242,6 +14576,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002073 ! avidity is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0002074 ! increased avidity created_by: George Gkoutos creation_date: 2009-09-18T01:45:59Z @@ -14466,6 +14801,7 @@ def: "A cellular quality inhering in a bearer by virtue of its stable specializa subset: mpath_slim subset: value_slim is_a: PATO:0001397 ! cellular potency +relationship: is_opposite_of PATO:0002100 ! undifferentiated created_by: george creation_date: 2009-10-05T12:58:54Z @@ -14476,6 +14812,7 @@ def: "A cellular quality inhering in a bearer by virtue of having not yet acquir subset: mpath_slim subset: value_slim is_a: PATO:0001397 ! cellular potency +relationship: is_opposite_of PATO:0002099 ! differentiated created_by: george creation_date: 2009-10-05T12:59:21Z @@ -14604,6 +14941,7 @@ subset: value_slim synonym: "permeable" RELATED [] synonym: "pierced" RELATED [] is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0001821 ! imperforate created_by: george creation_date: 2009-10-05T03:37:05Z @@ -14882,6 +15220,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002138 ! edibility disjoint_from: PATO:0002140 ! inedible +relationship: is_opposite_of PATO:0002140 ! inedible created_by: george creation_date: 2009-10-26T01:21:34Z @@ -14893,6 +15232,7 @@ subset: disposition_slim subset: relational_slim subset: value_slim is_a: PATO:0002138 ! edibility +relationship: is_opposite_of PATO:0002139 ! edible created_by: george creation_date: 2009-10-26T01:22:27Z @@ -14929,6 +15269,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002136 ! radiopacity is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0002145 ! decreased radiopacity created_by: george creation_date: 2009-10-30T03:30:39Z @@ -14940,6 +15281,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002136 ! radiopacity is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0002144 ! increased radiopacity created_by: george creation_date: 2009-10-30T03:31:31Z @@ -14961,6 +15303,7 @@ subset: value_slim synonym: "attenuated" EXACT [] is_a: PATO:0002146 ! virulence is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0002148 ! increased virulence created_by: george creation_date: 2009-10-30T05:05:02Z @@ -14971,6 +15314,7 @@ def: "A virulence that is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0002146 ! virulence is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0002147 ! reduced virulence created_by: george creation_date: 2009-10-30T05:13:10Z @@ -15362,6 +15706,7 @@ def: "A molecular quality that inheres in a molecular entity when it possesses a subset: value_slim is_a: PATO:0002190 ! aromaticity disjoint_from: PATO:0002192 ! non-aromatic +relationship: is_opposite_of PATO:0002192 ! non-aromatic created_by: George Gkoutos creation_date: 2010-03-10T03:25:59Z @@ -15371,6 +15716,7 @@ name: non-aromatic def: "A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic." [PATOC:JH] subset: value_slim is_a: PATO:0002190 ! aromaticity +relationship: is_opposite_of PATO:0002191 ! aromatic created_by: George Gkoutos creation_date: 2010-03-10T03:26:41Z @@ -15402,6 +15748,7 @@ def: "A quality which inheres in a molecular entity by virtue of the molecular e subset: value_slim is_a: PATO:0002193 ! electric charge disjoint_from: PATO:0002196 ! negative charge +relationship: is_opposite_of PATO:0002196 ! negative charge created_by: George Gkoutos creation_date: 2010-03-10T03:30:06Z @@ -15411,6 +15758,7 @@ name: negative charge def: "A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge." [PATOC:JH] subset: value_slim is_a: PATO:0002193 ! electric charge +relationship: is_opposite_of PATO:0002195 ! positive charge created_by: George Gkoutos creation_date: 2010-03-10T03:30:39Z @@ -15656,6 +16004,7 @@ def: "A quality inhering in a protein or a molecule by virtue of the bearer's ha subset: value_slim is_a: PATO:0002262 ! phosphorylation disjoint_from: PATO:0002263 ! dephosphorylated +relationship: is_opposite_of PATO:0002263 ! dephosphorylated created_by: george creation_date: 2010-07-09T01:50:14Z @@ -15667,6 +16016,7 @@ subset: value_slim synonym: "hyperphosphorylated" EXACT [] is_a: PATO:0002220 ! phosphorylated is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0002222 ! decreased phosphorylation created_by: george creation_date: 2010-07-09T01:51:52Z @@ -15678,6 +16028,7 @@ subset: value_slim synonym: "hypophosporylated" EXACT [] is_a: PATO:0002220 ! phosphorylated is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0002221 ! increased phosphorylation created_by: george creation_date: 2010-07-09T01:54:22Z @@ -15904,6 +16255,7 @@ subset: value_slim synonym: "increased force amplitude" EXACT [] is_a: PATO:0001035 ! force is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0002246 ! decreased force created_by: george creation_date: 2010-08-04T11:12:20Z @@ -15915,6 +16267,7 @@ subset: value_slim synonym: "decreased force amplitude" EXACT [] is_a: PATO:0001035 ! force is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0002245 ! increased force created_by: george creation_date: 2010-08-04T11:13:13Z @@ -15937,6 +16290,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0002247 ! degree of pigmentation disjoint_from: PATO:0002249 ! unpigmented +relationship: is_opposite_of PATO:0002249 ! unpigmented created_by: george creation_date: 2010-08-09T04:16:49Z @@ -15948,6 +16302,7 @@ subset: mpath_slim subset: value_slim synonym: "depigmented" EXACT [] is_a: PATO:0002247 ! degree of pigmentation +relationship: is_opposite_of PATO:0002248 ! pigmented created_by: george creation_date: 2010-08-09T04:17:04Z @@ -15960,6 +16315,7 @@ subset: value_slim synonym: "hyperpigmented" EXACT [] is_a: PATO:0002248 ! pigmented is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0002251 ! decreased pigmentation created_by: george creation_date: 2010-08-09T04:17:19Z @@ -15972,6 +16328,7 @@ subset: value_slim synonym: "hypopigmented" EXACT [] is_a: PATO:0002248 ! pigmented is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0002250 ! increased pigmentation created_by: george creation_date: 2010-08-09T04:17:37Z @@ -16095,6 +16452,7 @@ name: dephosphorylated def: "A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group." [url:http\://en.wikipedia.org/wiki/Dephosphorylation] subset: value_slim is_a: PATO:0002262 ! phosphorylation +relationship: is_opposite_of PATO:0002220 ! phosphorylated created_by: george creation_date: 2010-09-16T09:04:21Z @@ -16162,6 +16520,7 @@ subset: relational_slim subset: value_slim synonym: "accumulated" EXACT [] is_a: PATO:0002269 ! accumulation +relationship: is_opposite_of PATO:0002271 ! decreased accumulation created_by: george creation_date: 2010-10-26T02:00:20Z @@ -16172,6 +16531,7 @@ def: "An accumulation which is relative low." [PATOC:GVG] subset: relational_slim subset: value_slim is_a: PATO:0002269 ! accumulation +relationship: is_opposite_of PATO:0002270 ! increased accumulation created_by: george creation_date: 2010-10-26T02:04:45Z @@ -16272,6 +16632,7 @@ def: "A mobility which is relative high." [PATO:GVG] subset: value_slim is_a: PATO:0000299 ! mobile is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0002283 ! decreased mobility created_by: george creation_date: 2011-03-09T09:16:03Z @@ -16282,6 +16643,7 @@ def: "A mobility which is relative low." [PATOC:GVG] subset: value_slim is_a: PATO:0000299 ! mobile is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0002282 ! increased mobility created_by: george creation_date: 2011-03-09T09:16:47Z @@ -16301,6 +16663,7 @@ name: increased branchiness def: "Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:CVS] subset: value_slim is_a: PATO:0000402 ! branched +relationship: is_opposite_of PATO:0002286 ! decreased branchiness created_by: george creation_date: 2011-03-10T09:07:57Z @@ -16310,6 +16673,7 @@ name: decreased branchiness def: "Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:CVS] subset: value_slim is_a: PATO:0000402 ! branched +relationship: is_opposite_of PATO:0002285 ! increased branchiness created_by: george creation_date: 2011-03-10T09:08:37Z @@ -16320,6 +16684,7 @@ def: "An elasticity which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0001171 ! elastic is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0002288 ! decreased elasticity created_by: George Gkoutos creation_date: 2011-03-30T11:50:21Z @@ -16330,6 +16695,7 @@ def: "An elasticity which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0001171 ! elastic is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0002287 ! increased elasticity created_by: George Gkoutos creation_date: 2011-03-30T11:50:39Z @@ -16413,6 +16779,7 @@ def: "A cellular motility which is lower relative to the normal or average." [PA subset: value_slim is_a: PATO:0001488 ! cellular motility is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0002298 ! increased cellular motility [Term] id: PATO:0002298 @@ -16421,6 +16788,7 @@ def: "A cellular motility which is higher relative to the normal or average." [P subset: value_slim is_a: PATO:0001488 ! cellular motility is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0002297 ! decreased cellular motility [Term] id: PATO:0002299 @@ -16440,6 +16808,7 @@ name: increased quality def: "A quality that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0000069 ! deviation(from_normal) relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002301 ! decreased quality created_by: George Gkoutos creation_date: 2011-06-16T06:39:43Z @@ -16449,6 +16818,7 @@ name: decreased quality def: "A quality that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0000069 ! deviation(from_normal) relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal +relationship: is_opposite_of PATO:0002300 ! increased quality created_by: George Gkoutos creation_date: 2011-06-16T06:40:15Z @@ -16458,6 +16828,7 @@ name: decreased process quality def: "A quality of a process that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0001236 ! process quality is_a: PATO:0002301 ! decreased quality +relationship: is_opposite_of PATO:0002304 ! increased process quality created_by: George Gkoutos creation_date: 2011-06-16T06:50:59Z @@ -16467,6 +16838,7 @@ name: decreased object quality def: "A quality of an object that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality is_a: PATO:0002301 ! decreased quality +relationship: is_opposite_of PATO:0002305 ! increased object quality created_by: George Gkoutos creation_date: 2011-06-16T06:51:54Z @@ -16476,6 +16848,7 @@ name: increased process quality def: "A quality of a process that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0001236 ! process quality is_a: PATO:0002300 ! increased quality +relationship: is_opposite_of PATO:0002302 ! decreased process quality created_by: George Gkoutos creation_date: 2011-06-16T06:53:08Z @@ -16485,6 +16858,7 @@ name: increased object quality def: "A quality of an object that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality is_a: PATO:0002300 ! increased quality +relationship: is_opposite_of PATO:0002303 ! decreased object quality created_by: George Gkoutos creation_date: 2011-06-16T06:54:01Z @@ -16633,6 +17007,7 @@ creation_date: 2011-10-12T12:49:06Z id: PATO:0002321 name: hypoelliptic is_a: PATO:0002318 ! superelliptic +relationship: is_opposite_of PATO:0002322 ! hyperelliptic created_by: George Gkoutos creation_date: 2011-10-12T12:50:59Z @@ -16640,6 +17015,7 @@ creation_date: 2011-10-12T12:50:59Z id: PATO:0002322 name: hyperelliptic is_a: PATO:0002318 ! superelliptic +relationship: is_opposite_of PATO:0002321 ! hypoelliptic created_by: George Gkoutos creation_date: 2011-10-12T12:51:19Z @@ -16691,6 +17067,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0001475 ! increased position is_a: PATO:0002326 ! angle +relationship: is_opposite_of PATO:0002328 ! decreased angle to created_by: George Gkoutos creation_date: 2011-11-23T12:06:38Z @@ -16702,6 +17079,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0001476 ! decreased position is_a: PATO:0002326 ! angle +relationship: is_opposite_of PATO:0002327 ! increased angle to created_by: George Gkoutos creation_date: 2011-11-23T12:06:54Z @@ -16730,6 +17108,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer exhibiting subset: value_slim synonym: "resinous" RELATED [] is_a: PATO:0001431 ! adhesivity +relationship: is_opposite_of PATO:0002332 ! non-adhesive created_by: gkoutos creation_date: 2012-01-31T12:28:16Z @@ -16740,6 +17119,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer not exhibi subset: value_slim synonym: "non-resinous" RELATED [] is_a: PATO:0001431 ! adhesivity +relationship: is_opposite_of PATO:0002331 ! adhesive created_by: gkoutos creation_date: 2012-01-31T12:28:57Z @@ -16750,6 +17130,7 @@ def: "A adhesivity which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0002305 ! increased object quality is_a: PATO:0002331 ! adhesive +relationship: is_opposite_of PATO:0002334 ! decreased adhesivity created_by: gkoutos creation_date: 2012-01-31T12:32:43Z @@ -16759,6 +17140,7 @@ name: decreased adhesivity def: "A adhesivity which is relatively low." [PATOC:GVG] is_a: PATO:0002303 ! decreased object quality is_a: PATO:0002331 ! adhesive +relationship: is_opposite_of PATO:0002333 ! increased adhesivity created_by: gkoutos creation_date: 2012-01-31T12:42:22Z @@ -16939,6 +17321,7 @@ name: active def: "A quality of an physical object that is currently realizing one of its functions." [PATOC:RH] subset: attribute_slim is_a: PATO:0002353 ! activation quality +relationship: is_opposite_of PATO:0002355 ! inactive created_by: gkoutos creation_date: 2012-01-31T04:52:04Z @@ -16948,6 +17331,7 @@ name: inactive def: "A quality of a physical object that is currently realizing none of its functions." [PATOC:RH] subset: attribute_slim is_a: PATO:0002353 ! activation quality +relationship: is_opposite_of PATO:0002354 ! active created_by: gkoutos creation_date: 2012-01-31T04:52:14Z @@ -17008,6 +17392,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002305 ! increased object quality is_a: PATO:0002360 ! tendency +relationship: is_opposite_of PATO:0002362 ! decreased tendency created_by: gkoutos creation_date: 2012-03-16T06:31:57Z @@ -17020,6 +17405,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002303 ! decreased object quality is_a: PATO:0002360 ! tendency +relationship: is_opposite_of PATO:0002361 ! increased tendency created_by: gkoutos creation_date: 2012-03-16T06:32:57Z @@ -17038,6 +17424,7 @@ name: shortened def: "A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width." [PATOC:GVG] subset: value_slim is_a: PATO:0000052 ! shape +relationship: is_opposite_of PATO:0001154 ! elongated created_by: gkoutos creation_date: 2012-04-18T06:31:29Z @@ -17147,6 +17534,7 @@ def: "A structure quality inhering in a bearer by virtue of the bearer's being f subset: value_slim synonym: "air-filled" EXACT [] is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0002377 ! uninflated created_by: gkoutos creation_date: 2012-07-05T02:55:10Z @@ -17156,6 +17544,7 @@ name: uninflated def: "A structure quality inhering in a bearer by virtue of the bearer's being not filed with air." [PATOC:CVS] subset: value_slim is_a: PATO:0002014 ! structure, cavities +relationship: is_opposite_of PATO:0002376 ! inflated created_by: gkoutos creation_date: 2012-07-05T02:56:07Z @@ -17203,6 +17592,7 @@ def: "A waxiness which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0002305 ! increased object quality is_a: PATO:0002381 ! waxiness +relationship: is_opposite_of PATO:0002383 ! decreased waxiness created_by: gkoutos creation_date: 2012-07-05T03:18:03Z @@ -17212,6 +17602,7 @@ name: decreased waxiness def: "A waxiness which is relatively low." [] is_a: PATO:0002303 ! decreased object quality is_a: PATO:0002381 ! waxiness +relationship: is_opposite_of PATO:0002382 ! increased waxiness created_by: gkoutos creation_date: 2012-07-05T03:18:14Z @@ -17310,6 +17701,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0000515 ! tolerant to is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0002394 ! decreased tolerance to created_by: gkoutos creation_date: 2012-11-15T05:32:07Z @@ -17321,6 +17713,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0000515 ! tolerant to is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0002393 ! increased tolerance to created_by: gkoutos creation_date: 2012-11-15T05:33:05Z @@ -17776,6 +18169,7 @@ name: ornamented def: "A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures." [PATOC:AD] subset: value_slim is_a: PATO:0002440 ! ornamentation +relationship: is_opposite_of PATO:0002442 ! unornamented created_by: gkoutos creation_date: 2013-01-29T10:59:42Z @@ -17785,6 +18179,7 @@ name: unornamented def: "A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures." [PATOC:AD] subset: value_slim is_a: PATO:0002440 ! ornamentation +relationship: is_opposite_of PATO:0002441 ! ornamented created_by: gkoutos creation_date: 2013-01-29T11:00:20Z @@ -17879,6 +18274,7 @@ name: decondensed def: "A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed." [PATOC:JL] subset: value_slim is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0001485 ! condensed created_by: gkoutos creation_date: 2013-04-08T08:43:31Z @@ -18054,6 +18450,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer's increase subset: value_slim is_a: PATO:0002242 ! velocity is_a: PATO:0002305 ! increased object quality +relationship: is_opposite_of PATO:0002472 ! decreased velocity created_by: gkoutos creation_date: 2013-09-15T12:03:45Z @@ -18064,6 +18461,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer's decrease subset: value_slim is_a: PATO:0002242 ! velocity is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0002471 ! increased velocity created_by: gkoutos creation_date: 2013-09-15T12:05:06Z @@ -18248,6 +18646,7 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "anterodorsally directed" EXACT [] is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002526 ! anterodistal orientation created_by: gkoutos creation_date: 2013-10-10T05:12:15Z @@ -18278,6 +18677,7 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "distally directed" EXACT [] is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002495 ! dorsal orientation created_by: gkoutos creation_date: 2013-10-10T05:14:37Z @@ -18288,6 +18688,7 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "dorsally directed" EXACT [] is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002494 ! distal orientation created_by: gkoutos creation_date: 2013-10-10T05:15:24Z @@ -18378,6 +18779,7 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "posterodorsally directed" EXACT [] is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002527 ! posterodistal orientation created_by: gkoutos creation_date: 2013-10-10T05:19:36Z @@ -18585,6 +18987,7 @@ name: anterodistal orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally." [PATOC:EJS] synonym: "antero-distal orientation" EXACT [] is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002491 ! anterodorsal orientation created_by: segerdel creation_date: 2014-03-11T11:28:39Z @@ -18594,6 +18997,7 @@ name: posterodistal orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally." [PATOC:EJS] synonym: "postero-distal orientation" EXACT [] is_a: PATO:0000133 ! orientation +relationship: is_opposite_of PATO:0002504 ! posterodorsal orientation created_by: segerdel creation_date: 2014-03-11T11:29:22Z @@ -18881,6 +19285,7 @@ name: complete structure def: "A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts." [PATOC:WD] subset: value_slim is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0005013 ! incomplete structure created_by: wasila.dahdul creation_date: 2014-09-25T15:11:47Z @@ -18890,6 +19295,7 @@ name: incomplete structure def: "A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities." [PATOC:WD] subset: value_slim is_a: PATO:0000141 ! structure +relationship: is_opposite_of PATO:0005012 ! complete structure created_by: wasila.dahdul creation_date: 2014-09-25T15:12:35Z @@ -19072,6 +19478,7 @@ def: "A decrease in the ability of a process to produce its output." [PATOC:Port subset: value_slim is_a: PATO:0002302 ! decreased process quality is_a: PATO:0015002 ! process efficacy +relationship: is_opposite_of PATO:0015004 ! increased efficacy created_by: cjm [Term] @@ -19081,6 +19488,7 @@ def: "A increase in the ability of a process to produce its output." [PATOC:Port subset: value_slim is_a: PATO:0002304 ! increased process quality is_a: PATO:0015002 ! process efficacy +relationship: is_opposite_of PATO:0015003 ! decreased efficacy created_by: cjm [Term] @@ -19132,6 +19540,7 @@ subset: value_slim synonym: "humid" RELATED [] is_a: PATO:0002305 ! increased object quality is_a: PATO:0015009 ! humidity +relationship: is_opposite_of PATO:0015011 ! decreased humidity [Term] id: PATO:0015011 @@ -19140,6 +19549,7 @@ def: "An decrease in humidity." [https://github.com/pato-ontology/pato/issues/90 subset: value_slim is_a: PATO:0002303 ! decreased object quality is_a: PATO:0015009 ! humidity +relationship: is_opposite_of PATO:0015010 ! increased humidity [Term] id: PATO:0015012 @@ -19163,6 +19573,7 @@ subset: value_slim synonym: "illuminated" RELATED [] is_a: PATO:0002305 ! increased object quality is_a: PATO:0015013 ! degree of illumination +relationship: is_opposite_of PATO:0015015 ! decreased degree of illumination [Term] id: PATO:0015015 @@ -19171,6 +19582,7 @@ def: "An decrease in illumination." [https://github.com/pato-ontology/pato/issue subset: value_slim is_a: PATO:0002303 ! decreased object quality is_a: PATO:0015013 ! degree of illumination +relationship: is_opposite_of PATO:0015014 ! increased degree of illumination [Term] id: PATO:0015016 @@ -19222,6 +19634,7 @@ subset: value_slim synonym: "combustible" EXACT [] is_a: PATO:0002305 ! increased object quality is_a: PATO:0015021 ! combustibility +relationship: is_opposite_of PATO:0015023 ! decreased combustibility [Term] id: PATO:0015023 @@ -19231,6 +19644,7 @@ subset: value_slim synonym: "noncombustible" RELATED [] is_a: PATO:0002303 ! decreased object quality is_a: PATO:0015021 ! combustibility +relationship: is_opposite_of PATO:0015022 ! increased combustibility [Term] id: PATO:0015024 @@ -19247,6 +19661,7 @@ def: "An decrease in porosity." [https://github.com/pato-ontology/pato/issues/11 subset: value_slim is_a: PATO:0000973 ! porosity is_a: PATO:0002303 ! decreased object quality +relationship: is_opposite_of PATO:0015024 ! increased porosity [Term] id: PATO:0015026 @@ -19273,6 +19688,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002303 ! decreased object quality is_a: PATO:0015026 ! stability +relationship: is_opposite_of PATO:0015027 ! increased stability [Term] id: PATO:0015029 @@ -19330,6 +19746,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer not being synonym: "undrinkable" EXACT [] is_a: PATO:0025000 ! potability disjoint_from: PATO:0025002 ! potable +relationship: is_opposite_of PATO:0025002 ! potable created_by: pbuttigieg creation_date: 2015-09-01T16:18:57Z @@ -19339,6 +19756,7 @@ name: potable def: "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration." [Wikipedia:https\://en.wikipedia.org/wiki/Drinking_water] synonym: "drinkable" EXACT [] is_a: PATO:0025000 ! potability +relationship: is_opposite_of PATO:0025001 ! non-potable created_by: pbuttigieg creation_date: 2015-09-01T16:19:02Z @@ -20561,6 +20979,7 @@ name: north def: "North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west." [Wikipedia:http\://en.wikipedia.org/wiki/North] subset: value_slim is_a: PATO:0045090 ! cardinal direction +relationship: is_opposite_of PATO:0045093 ! south created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20570,6 +20989,7 @@ name: east def: "East is one of the four cardinal directions or points of the compass. It is the opposite direction from west." [Wikipedia:http\://en.wikipedia.org/wiki/East] subset: value_slim is_a: PATO:0045090 ! cardinal direction +relationship: is_opposite_of PATO:0045094 ! west created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20579,6 +20999,7 @@ name: south def: "South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west." [Wikipedia:http\://en.wikipedia.org/wiki/South] subset: value_slim is_a: PATO:0045090 ! cardinal direction +relationship: is_opposite_of PATO:0045091 ! north created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20588,6 +21009,7 @@ name: west def: "West is one of the four cardinal directions or points of the compass. It is the opposite direction from east." [Wikipedia:http\://en.wikipedia.org/wiki/West] subset: value_slim is_a: PATO:0045090 ! cardinal direction +relationship: is_opposite_of PATO:0045092 ! east created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20766,6 +21188,17 @@ id: is_measurement_of name: is_measurement_of namespace: pato.ontology +[Typedef] +id: is_opposite_of +name: is opposite of +name: is_opposite_of +def: "x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x)." [] +xref: RO:0002604 +property_value: IAO:0000112 "'anterior end of organism' is-opposite-of 'posterior end of organism'" xsd:string +property_value: IAO:0000112 "'increase in temperature' is-opposite-of 'decrease in temperature'" xsd:string +is_metadata_tag: true +is_class_level: true + [Typedef] id: is_unit_of name: is_unit_of diff --git a/pato.owl b/pato.owl index 5dc5a140..8ffb4a61 100644 --- a/pato.owl +++ b/pato.owl @@ -204,7 +204,19 @@ - + + 'anterior end of organism' is-opposite-of 'posterior end of organism' + 'increase in temperature' is-opposite-of 'decrease in temperature' + x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). + RO:0002604 + quality + is_opposite_of + true + true + is_opposite_of + is opposite of + is_opposite_of + @@ -2354,12 +2366,6 @@ Each of these 3 primitives can be composed to yield a cross-product of different - - - - - - @@ -11545,14 +11551,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely. + quality PATO:0000299 @@ -11572,13 +11573,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely. + quality fixed PATO:0000300 @@ -11633,13 +11629,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A speed which is relatively high. + high speed quality fast speed @@ -11672,13 +11663,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A speed which is relatively low. + slow slow speed quality @@ -11732,13 +11718,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An age which is relatively high. + quality PATO:0000308 @@ -11757,13 +11738,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An age which is relatively low. + quality PATO:0000309 @@ -12041,13 +12017,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color brightness which is relatively low. + dark quality PATO:0000327 @@ -12067,13 +12038,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color saturation which is of low purity. + pale quality dull @@ -12114,13 +12080,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency. + quality PATO:0000330 @@ -12141,13 +12102,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color. + quality PATO:0000331 @@ -12217,13 +12173,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color quality inhering in a bearer by virtue of the bearer's having color. + PATO:0000332 quality pigmented @@ -12331,14 +12282,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A compatibility quality inhering in a bearer by virtue of the bearer's being capable of harmonious coexistence. + quality PATO:0000344 @@ -12359,13 +12305,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A compatibility quality inhering in a bearer by virtue of the bearer's being incapable of harmonious coexistence. + quality PATO:0000345 @@ -12595,13 +12536,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point. + quality PATO:0000365 @@ -12680,13 +12616,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point. + quality PATO:0000370 @@ -12750,13 +12681,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A distance which is greater relative to the normal or average. + quality long distance PATO:0000374 @@ -12789,13 +12715,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A distance which is lesser relative to the normal or average. + quality short distance PATO:0000375 @@ -12872,13 +12793,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A frequency which is relatively high. + high frequency quality frequent @@ -12912,13 +12828,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A frequency which is relatively low. + low frequency quality infrequent @@ -13014,13 +12925,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A hardness quality of being rigid and resistant to pressure. + quality firm impenetrable @@ -13056,13 +12962,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A hardness quality of giving little resistance to pressure. + quality PATO:0000387 @@ -13094,13 +12995,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course. + quality PATO:0000389 @@ -13284,14 +13180,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A branchiness quality inhering in a bearer by virtue of the bearer's having branches. + ramified ramiform quality @@ -13335,13 +13226,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals). + PATO:0001363 spiral quality @@ -13541,13 +13427,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches. + quality PATO:0000414 @@ -13568,13 +13449,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals). + quality PATO:0000415 @@ -13659,13 +13535,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth. + quality PATO:0000422 @@ -13685,13 +13556,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth. + quality PATO:0000423 @@ -13744,13 +13610,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly. + quality PATO:0000427 @@ -13771,13 +13632,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances. + quality PATO:0000428 @@ -13913,13 +13769,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation. + uniform quality constant @@ -13951,13 +13802,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement. + quality PATO:0000440 @@ -14238,13 +14084,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's deviation from normal or average. + quality aberrant atypia @@ -14269,13 +14110,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average. + quality average PATO:0000461 @@ -14297,12 +14133,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - @@ -14317,6 +14147,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality denoting the lack of an entity. + PATO:0001996 absence absent from organism @@ -14341,13 +14172,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of being clearly visible. + quality distinct PATO:0000463 @@ -14368,13 +14194,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of not being clearly visible. + quality faint PATO:0000464 @@ -14417,13 +14238,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's existence. + quality present in organism PATO:0000467 @@ -14477,13 +14293,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An amount which is relatively high. + PATO:0000420 PATO:0000650 increased number @@ -14685,14 +14496,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent. + responsive quality PATO:0000487 @@ -14714,13 +14520,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent. + unresponsive quality PATO:0000488 @@ -14853,13 +14654,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration quality of a process which is relatively high. + PATO:0000715 high time increased period @@ -14897,13 +14693,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration quality of a process which is relatively low. + PATO:0000716 decreased period decreased time @@ -15005,13 +14796,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm. + quality PATO:0000504 @@ -15030,13 +14816,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm. + quality PATO:0000505 @@ -15132,13 +14913,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus. + insensitive quality resistant @@ -15195,13 +14971,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's having sensitivity toward an external stimulus. + sensitive quality PATO:0000516 @@ -15542,14 +15313,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity. + quality photoresistant PATO:0000546 @@ -15570,13 +15336,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A photosensitivity quality inhering in a bearer by virtue of the bearer's exhibiting photosensitivity. + quality PATO:0000547 @@ -15841,13 +15602,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A height which is relatively low. + quality short PATO:0000569 @@ -15879,13 +15635,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A height which is relatively high. + quality tall PATO:0000570 @@ -15939,13 +15690,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A length quality which is relatively large. + long quality PATO:0000573 @@ -15977,13 +15723,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A length quality which is relatively small. + short quality shortened @@ -16092,13 +15833,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A weight which is relatively high. + heavy high weight quality @@ -16131,13 +15867,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A weight which is relatively low. + light weight low weight quality @@ -16158,13 +15889,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ). + hypertrophy quality PATO:0000584 @@ -16185,13 +15911,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ). + PATO:0000412 shrunken quality @@ -16225,13 +15946,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A size quality which is relatively high. + PATO:0001202 quality big @@ -16268,13 +15984,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A size quality which is relatively low. + hypoplasia underdeveloped quality @@ -16352,13 +16063,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A thickness which is relatively high. + high thickness stout thickened @@ -16394,13 +16100,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A thickness which is relatively low. + low thickness quality slender @@ -16457,13 +16158,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A volume which is relatively high. + high volume quality large volume @@ -16497,13 +16193,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A volume which is relatively low. + low volume quality small volume @@ -16559,13 +16250,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A width which is relatively small. + quality narrow PATO:0000599 @@ -16597,13 +16283,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A width which is relatively large. + quality broad wide @@ -16704,14 +16385,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view. + quality blocked PATO:0000608 @@ -16750,13 +16426,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view. + quality PATO:0000610 @@ -16797,13 +16468,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation. + quality PATO:0000613 @@ -16822,13 +16488,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A pattern where all the repeated elements are oriented in the same direction. + quality PATO:0000614 @@ -16930,13 +16591,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A positional quality inhering in a bearer by virtue of the bearer's being overfilled. + quality PATO:0000619 @@ -17219,13 +16875,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled. + quality PATO:0000633 @@ -17342,15 +16993,10 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process. + degeneration quality PATO:0000639 @@ -17404,13 +17050,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity. + fused fused to quality @@ -17456,13 +17097,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells. + PATO:0000943 hyperplasia quality @@ -17486,13 +17122,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue. + PATO:0000942 hypoplasia quality @@ -17596,13 +17227,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity. + unfused quality PATO:0000651 @@ -17766,13 +17392,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color brightness which is relatively high. + light quality PATO:0000665 @@ -18032,13 +17653,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase. + quality PATO:0000688 @@ -18057,13 +17673,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent. + PATO:0000429 uninterrupted quality @@ -18084,13 +17695,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions. + PATO:0000426 interrupted quality @@ -18176,13 +17782,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase. + quality PATO:0000695 @@ -18245,13 +17846,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A texture quality inhering in a bearer by virtue of the bearer's irregular surface. + PATO:0001616 coarse quality @@ -18273,13 +17869,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities. + quality PATO:0000701 @@ -18355,13 +17946,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A threshold which is relatively high. + PATO:0000709 high threshold quality @@ -18406,13 +17992,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A threshold which is relatively low. + PATO:0000707 low threshold quality @@ -18978,14 +18559,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A balance quality inhering in a bearer by virtue of the bearer's having balance. + quality PATO:0000757 @@ -19004,13 +18580,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A balance quality inhering in a bearer by virtue of the bearer's lacking balance. + quality PATO:0000758 @@ -19067,13 +18638,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity. + hyperactive quality PATO:0000760 @@ -19105,13 +18671,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity. + hypoactive quality PATO:0000761 @@ -19258,14 +18819,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement. + quality PATO:0000769 @@ -19285,13 +18841,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement. + quality PATO:0000770 @@ -20629,14 +20180,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction. + quality PATO:0000888 @@ -20667,14 +20213,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male fertility quality inhering in a male by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + quality male infertile PATO:0000890 @@ -20695,13 +20236,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. + quality PATO:0000891 @@ -20721,13 +20257,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + quality female infertile PATO:0000892 @@ -20962,13 +20493,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A rate which is relatively low. + slow rate quality PATO:0000911 @@ -21001,13 +20527,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A rate which is relatively high. + fast rate high rate quality @@ -21341,14 +20862,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's lacking organisation. + quality PATO:0000937 @@ -21368,13 +20884,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation. + quality PATO:0000938 @@ -21691,14 +21202,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction. + quality PATO:0000955 @@ -21718,13 +21224,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction. + quality PATO:0000956 @@ -21818,13 +21319,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy. + non-transparent quality clouding @@ -21847,13 +21343,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A optical quality inhering in a bearer by virtue of the bearer's lacking opacity. + clear hyaline quality @@ -22117,14 +21608,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + quality porous PATO:0000982 @@ -22145,13 +21631,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion). + quality PATO:0000983 @@ -22171,14 +21652,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices. + quality PATO:0000984 @@ -22198,13 +21674,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices. + quality PATO:0000985 @@ -23021,13 +22492,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in an entity by virtue of the bearer's propensity to resist an external stimulus. + susceptibility quality PATO:0001043 @@ -23071,13 +22537,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus. + resistance quality PATO:0001046 @@ -24300,14 +23761,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus. + susceptible quality PATO:0001152 @@ -24329,13 +23785,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus. + insusceptible quality PATO:0001153 @@ -24357,13 +23808,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width. + quality PATO:0001154 @@ -24489,13 +23935,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A concentration which is higher relative to the normal or average. + high concentration quality PATO:0001162 @@ -24528,13 +23969,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A concentration which is lower relative to the normal or average. + low concentration quality PATO:0001163 @@ -24597,14 +24033,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired. + quality PATO:0001167 @@ -24623,13 +24054,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled. + quality PATO:0001168 @@ -24669,14 +24095,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way. + quality PATO:0001171 @@ -24697,13 +24118,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way. + quality PATO:0001172 @@ -25016,13 +24432,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent. + hyperresponsive increased responsivity quality @@ -25079,13 +24490,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent. + decreased responsivity hyporesponsive quality @@ -25289,13 +24695,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex. + serrate quality PATO:0001206 @@ -25545,13 +24946,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change. + variable quality PATO:0001227 @@ -25583,13 +24979,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A color saturation which is of high purity. + bright quality vivid @@ -25652,13 +25043,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial quality inhering in a bearer by virtue of the bearer's being located toward the back or upper surface of an organism relative to another entity. + dorsal posterior_to (human torso) superior_to (human head) @@ -25681,13 +25067,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity. + distal quality PATO:0001234 @@ -27084,13 +26465,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A temperature which is relatively high. + PATO:0000678 high temperature hot @@ -27124,13 +26500,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A temperature which is relatively low. + PATO:0000677 cold low temperature @@ -27164,13 +26535,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of temperature which is relatively low. + low variability of temperature quality PATO:0001307 @@ -27202,13 +26568,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of temperature which is relatively high. + high variability of temperature quality PATO:0001308 @@ -27283,13 +26644,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration of temperature which is lesser relative to the normal or average enduring or continuing in time. + quality PATO:0001311 @@ -27320,13 +26676,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time. + high duration of temperature quality PATO:0001312 @@ -27346,13 +26697,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature. + quality PATO:0001313 @@ -27371,13 +26717,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature. + quality PATO:0001314 @@ -27453,14 +26794,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli. + quality PATO:0001318 @@ -27481,13 +26817,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli. + quality PATO:0001319 @@ -28216,13 +27547,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere. + quality PATO:0001355 @@ -28365,14 +27691,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed. + quality PATO:0001362 @@ -29354,13 +28675,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's having distinct structure. + quality PATO:0001411 @@ -29379,13 +28695,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure. + quality PATO:0001412 @@ -29464,13 +28775,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration which has regular start and/or end times. + quality PATO:0001416 @@ -29489,13 +28795,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times. + quality PATO:0001417 @@ -30257,14 +29558,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's dependence on oxygen. + quality PATO:0001455 @@ -30284,13 +29580,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's independence on oxygen. + quality PATO:0001456 @@ -30353,13 +29644,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen. + quality PATO:0001459 @@ -30379,13 +29665,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen. + quality PATO:0001460 @@ -30637,13 +29918,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A depth which is relatively low. + PATO:0001692 low depth shallow @@ -30718,13 +29994,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A position which is relatively high. + quality high position PATO:0001475 @@ -30756,13 +30027,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A positional which is relatively low. + quality low position PATO:0001476 @@ -30950,13 +30216,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together. + PATO:0001840 compact compressed @@ -31105,12 +30366,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001493 @@ -31124,12 +30380,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001494 @@ -31265,13 +30516,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development. + quality underdeveloped PATO:0001501 @@ -31446,13 +30692,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A functionality quality held by the bearer when the latter is able to perform a regular function(s). + quality PATO:0001510 @@ -31472,13 +30713,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s). + PATO:0001640 disfunctional functional failure @@ -31991,14 +31227,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid. + soluble quality PATO:0001537 @@ -32020,13 +31251,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A solubility quality inhering in a substance by virtue of the bearer's inability of a substance to dissolve in a liquid. + insoluble quality PATO:0001538 @@ -32146,13 +31372,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking. + bendy quality PATO:0001544 @@ -32173,13 +31394,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking. + stiff quality stiffness @@ -32274,13 +31490,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity toward an external stimulus which is higher than normal/average. + high sensitivity toward increased sensitivity quality @@ -32315,13 +31526,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity toward an external stimulus which is lower than normal/average. + decreased sensitivity low sensitivity toward quality @@ -32356,13 +31562,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of a process which is higher than normal or average. + high sensitivity of occurrent increased sensitivity of occurrent quality @@ -32396,13 +31597,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of a process which is lower than normal or average. + decreased sensitivity of occurrent low sensitivity of occurrent quality @@ -32436,13 +31632,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of occurrent to oxygen which is higher than normal or average. + high sensitivity of occurrent to oxygen quality PATO:0001553 @@ -32475,13 +31666,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity of a process to oxygen which is lower than normal or average. + low sensitivity of occurrent to oxygen quality PATO:0001554 @@ -32657,13 +31843,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mass which is lower than normal or average. + PATO:0000579 low mass small mass @@ -32697,13 +31878,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mass which is higher than normal or average. + PATO:0000578 high mass large mass @@ -32754,14 +31930,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up. + PATO:0001513 diffuse scattered @@ -32784,13 +31955,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up. + quality PATO:0001567 @@ -32931,13 +32097,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A pressure which is relatively low. + low pressure quality PATO:0001575 @@ -32969,13 +32130,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A pressure which is relatively high. + high pressure quality PATO:0001576 @@ -33007,13 +32163,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A permeability which is relatively high. + high permeability quality PATO:0001577 @@ -33046,13 +32197,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A permeability which is relatively low. + low permeability quality PATO:0001578 @@ -33106,13 +32252,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A contractility which is relatively high. + high contractility quality PATO:0001580 @@ -33145,13 +32286,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A contractility which is relatively low. + low contractility quality PATO:0001581 @@ -33203,13 +32339,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability which is relatively low. + low variability quality PATO:0001583 @@ -33241,13 +32372,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability which is relatively high. + high variability quality PATO:0001584 @@ -33326,13 +32452,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of rate which is relatively high. + high variability of rate quality PATO:0001587 @@ -33364,13 +32485,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of rate which is relatively low. + low variability of rate quality PATO:0001588 @@ -33462,13 +32578,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A curvature which is relatively high. + quality PATO:0001592 @@ -33499,13 +32610,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A curvature which is relatively low. + quality PATO:0001593 @@ -33575,13 +32681,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A depth quality which is relatively high. + PATO:0001666 deep quality @@ -33738,13 +32839,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A life span which is relatively high. + high life span quality PATO:0001603 @@ -33775,13 +32871,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A life span which is relatively low. + low life span quality PATO:0001604 @@ -33947,13 +33038,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of color which is relatively high. + high variability of color quality PATO:0001612 @@ -33985,13 +33071,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of color which is relatively low. + low variability of color quality PATO:0001613 @@ -34011,13 +33092,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color. + quality PATO:0001614 @@ -34036,13 +33112,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour. + quality PATO:0001615 @@ -34104,13 +33175,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tonicity which is relatively high. + high tonicity quality PATO:0001618 @@ -34143,13 +33209,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tonicity which is relatively low. + low tonicity quality PATO:0001619 @@ -34202,13 +33263,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A turgor which is relatively low. + low turgor quality PATO:0001621 @@ -34241,13 +33297,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A turgor which is relatively high. + high turgor quality PATO:0001622 @@ -34302,13 +33353,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s). + PATO:0001556 PATO:0001568 PATO:0001641 @@ -34351,13 +33397,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s). + high functionality quality PATO:0001625 @@ -34399,13 +33440,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality. + quality adequate PATO:0001627 @@ -34425,13 +33461,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality. + quality inadequate PATO:0001628 @@ -34568,14 +33599,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being essential or indispensable. + quality PATO:0001635 @@ -34594,13 +33620,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable. + quality PATO:0001636 @@ -34638,13 +33659,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable. + quality PATO:0001638 @@ -34663,13 +33679,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable. + quality PATO:0001639 @@ -34851,13 +33862,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A resistance to a stimulus which is relatively high. + high resistance to increased resistance quality @@ -34892,13 +33898,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A resistance to a stimulus which is relatively low. + decreased resistance low resistance to quality @@ -34947,13 +33948,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity. + aligned quality aligned to @@ -34975,13 +33971,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity. + misaligned unaligned with quality @@ -35036,13 +34027,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A osmolarity which is relatively low. + low osmolarity quality PATO:0001656 @@ -35075,13 +34061,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A osmolarity which is relatively high. + high osmolarity quality PATO:0001657 @@ -35216,13 +34197,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A solubility which is relatively high. + high solubility quality PATO:0001663 @@ -35256,13 +34232,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A solubility which is relatively low. + low solubility quality PATO:0001664 @@ -35374,13 +34345,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A susceptibility toward an external stimulus which is higher than normal/average. + high susceptibility toward increased susceptibility quality @@ -35415,13 +34381,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A susceptibility toward an external stimulus which is lower than normal/average. + decreased susceptibility low susceptibility toward quality @@ -35456,13 +34417,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A distribution which is relatively high. + high distribution quality PATO:0001671 @@ -35494,13 +34450,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A distribution which is relatively low. + low distribution quality PATO:0001672 @@ -35574,13 +34525,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An efficiency which is relatively low. + low efficiency quality PATO:0001675 @@ -35612,13 +34558,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An efficiency which is relatively high. + high efficiency quality PATO:0001676 @@ -35638,14 +34579,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An efficiency quality inhering in a bearer by virtue of the bearer's lacking efficiency. + quality PATO:0001677 @@ -35664,13 +34600,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency. + quality PATO:0001678 @@ -35783,13 +34714,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A magnetism which is relatively high. + high magnetism quality PATO:0001683 @@ -35822,13 +34748,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A magnetism which is relatively low. + low magnetism quality PATO:0001684 @@ -35849,14 +34770,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism. + quality PATO:0001685 @@ -35876,13 +34792,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A magnetic quality inhering in a bearer by virtue of the bearer's inability to exert magnitism. + quality PATO:0001686 @@ -35933,13 +34844,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elevation which is relatively high. + high elevation quality elevated @@ -35972,13 +34878,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elevation which is relatively low. + low elevation quality PATO:0001689 @@ -35998,14 +34899,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted. + quality PATO:0001690 @@ -36026,13 +34922,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted. + quality PATO:0001691 @@ -36075,13 +34966,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A viscosity which relatively high. + high viscosity quality PATO:0001693 @@ -36114,13 +35000,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A viscosity which relatively low. + low viscosity quality PATO:0001694 @@ -36153,13 +35034,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fecundity which is relatively high. + high fecundity quality PATO:0001695 @@ -36192,13 +35068,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fecundity which is relatively low. + low fecundity quality PATO:0001696 @@ -36231,13 +35102,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A photosensitivity which is relatively low. + low photosensitivity quality PATO:0001697 @@ -36271,13 +35137,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A photosensitivity which is relatively high. + high photosensitivity quality PATO:0001698 @@ -36299,13 +35160,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sleep pattern which has regular start and/or end times. + quality PATO:0001699 @@ -36324,13 +35180,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sleep pattern which has irregular start and/or end times. + quality PATO:0001700 @@ -36349,13 +35200,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development. + quality PATO:0001701 @@ -36454,14 +35300,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A behavioral quality inhering in a bearer by virtue of the bearer's disposition to lack activity. + quality PATO:0001706 @@ -36481,13 +35322,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity. + quality PATO:0001707 @@ -36598,13 +35434,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A perimeter which is relatively high. + quality PATO:0001712 @@ -36635,13 +35466,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A perimeter which is relatively low. + quality PATO:0001713 @@ -36672,13 +35498,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A diameter which is relatively large. + quality PATO:0001714 @@ -36709,13 +35530,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A diameter which is relatively small. + quality PATO:0001715 @@ -36734,13 +35550,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking. + quality resilient strong @@ -36884,13 +35695,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female receptivity which is relatively high. + high female receptivity quality PATO:0001723 @@ -36923,13 +35729,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female receptivity which is relatively low. + low female receptivity quality PATO:0001724 @@ -36962,13 +35763,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male receptivity which is relatively high. + high male receptivity quality PATO:0001725 @@ -37001,13 +35797,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male receptivity which is relatively low. + low male receptivity quality PATO:0001726 @@ -37345,13 +36136,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A radioactivity which is relatively low. + high radioactivity quality PATO:0001742 @@ -37383,13 +36169,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A radioactivity which is relatively high. + low radioactivity quality PATO:0001743 @@ -37510,13 +36291,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth. + hypoplastic growth pedomorphic growth quality @@ -37575,13 +36351,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth. + hyperplastic growth quality PATO:0001752 @@ -37743,12 +36514,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001760 @@ -37762,12 +36528,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001761 @@ -37781,12 +36542,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001762 @@ -37800,12 +36556,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + quality PATO:0001763 @@ -37831,13 +36582,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An age which is high relative to the normal or average. + high age quality PATO:0001764 @@ -37869,13 +36615,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An age which is low relative to the normal or average. + low age quality PATO:0001765 @@ -38098,13 +36839,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A flexibility which is relatively high. + high flexibility quality PATO:0001776 @@ -38137,13 +36873,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A flexibility which is relatively low. + low flexibility quality PATO:0001777 @@ -38176,13 +36907,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A strength which is relatively high. + high strength quality PATO:0001778 @@ -38214,13 +36940,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A strength which is relatively low. + weak quality PATO:0001779 @@ -38292,13 +37013,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An intensity which is relatively high. + high intensity quality PATO:0001782 @@ -38330,13 +37046,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An intensity which is relatively low. + low intensity quality PATO:0001783 @@ -38459,13 +37170,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A density which is higher relative to the normal or average. + high density quality PATO:0001788 @@ -38518,13 +37224,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A density which is lower relative to the normal or average. + low density quality PATO:0001790 @@ -38638,13 +37339,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coiling which is relatively high. + high coiling quality PATO:0001795 @@ -38677,13 +37373,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coiling which is relatively low. + low coiling quality PATO:0001796 @@ -38922,13 +37613,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity to irradiation which is relatively low. + low sensitivity to irradiation quality PATO:0001807 @@ -38961,13 +37647,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A sensitivity to irradiation which is relatively high. + high sensitivity to irradiation quality PATO:0001808 @@ -39131,13 +37812,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fatigability which is relatively high. + high fatigability quality PATO:0001816 @@ -39159,13 +37835,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fatigability which is relatively low. + low fatigability quality PATO:0001817 @@ -39186,13 +37857,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time. + quality PATO:0001818 @@ -39244,13 +37910,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's having no opening. + unperforated quality PATO:0001821 @@ -39292,14 +37953,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid. + quality PATO:0001823 @@ -39319,13 +37975,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid. + quality PATO:0001824 @@ -39357,13 +38008,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wetness quality that is relatively high. + quality PATO:0001825 @@ -39394,13 +38040,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A wetness quality that is relatively low. + low wetness quality PATO:0001826 @@ -39489,13 +38130,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female fertility which is relatively low. + low female fertility quality PATO:0001830 @@ -39528,13 +38164,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A female fertility which is relatively high. + high female fertility quality PATO:0001831 @@ -39567,13 +38198,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male fertility which is relatively high. + high male fertility quality PATO:0001832 @@ -39606,13 +38232,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A male fertility which is relatively low. + low male fertility quality PATO:0001833 @@ -39645,13 +38266,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fertility which is relatively low. + low fertility quality PATO:0001834 @@ -39684,13 +38300,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fertility which is relatively high. + high fertility quality PATO:0001835 @@ -39753,13 +38364,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A flow that is relatively low. + low flow quality PATO:0001838 @@ -39791,13 +38397,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fluid flow that is relatively high. + high flow quality PATO:0001839 @@ -39881,13 +38482,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An acidity which is relatively low. + low acidity quality PATO:0001843 @@ -39919,13 +38515,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An acidity which is relatively high. + high acidity quality PATO:0001844 @@ -40203,13 +38794,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality in a bearer by virtue of the bearer's curving inward. + quality PATO:0001857 @@ -40260,13 +38846,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coordination which is relatively high. + high coordination quality PATO:0001859 @@ -40299,13 +38880,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A coordination which is relatively low. + low coordination quality PATO:0001860 @@ -40326,14 +38902,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve. + fascicled quality PATO:0001861 @@ -40375,13 +38946,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration. + quality PATO:0001863 @@ -40838,14 +39404,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water. + quality PATO:0001884 @@ -40865,13 +39426,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water. + quality PATO:0001885 @@ -40891,13 +39447,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water. + quality PATO:0001886 @@ -40917,13 +39468,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water. + quality PATO:0001887 @@ -41050,13 +39596,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An odor quality of having decreased odor. + quality PATO:0001892 @@ -41087,13 +39628,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An odor quality of having increased odor. + quality PATO:0001893 @@ -41144,13 +39680,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. + quality PATO:0001896 @@ -41169,13 +39700,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structure quality inhering in a bearer by virtue of the bearer's having a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances. + quality PATO:0001897 @@ -41207,13 +39733,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A circumference which is relatively high. + quality PATO:0001898 @@ -41244,13 +39765,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A circumference which is relatively low. + quality PATO:0001899 @@ -41269,13 +39785,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north. + quality PATO:0001900 @@ -41294,13 +39805,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south. + quality PATO:0001901 @@ -41798,13 +40304,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fluorescence which is higher than normal. + high fluorescence quality PATO:0001926 @@ -41836,13 +40337,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fluorescence which is lower than normal. + low fluorescence quality PATO:0001927 @@ -41908,13 +40404,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape. + quality PATO:0001930 @@ -41933,13 +40424,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape. + quality PATO:0001931 @@ -42460,13 +40946,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of size which is relatively low. + low variability of size quality PATO:0001957 @@ -42498,13 +40979,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A variability of size which is relatively high. + high variability of size quality PATO:0001958 @@ -42524,13 +41000,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated. + quality PATO:0001959 @@ -42836,13 +41307,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex. + quality PATO:0001975 @@ -43272,13 +41738,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An amount which is relatively low. + PATO:0000419 PATO:0000468 decreased number @@ -43384,13 +41845,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. + PATO:0001569 decreased number of has decreased number of @@ -43426,13 +41882,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. + PATO:0001560 has extra parts of has increased number of @@ -43537,12 +41988,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - @@ -43550,6 +41995,7 @@ Association is weaker than correlation or proportionality. These relations may b A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave. + Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png quality PATO:0002007 @@ -43576,13 +42022,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave. + Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png quality PATO:0002008 @@ -43741,12 +42182,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + high magnitude quality PATO:0002017 @@ -43759,12 +42195,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + low magnitude quality PATO:0002018 @@ -43914,13 +42345,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time. + george gkoutos 2008-12-18T12:49:19Z quality @@ -43978,13 +42404,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An osmolality which is relatively low. + george 2009-01-27T10:55:33Z low osmolality @@ -44019,13 +42440,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An osmolality which is relatively high. + george 2009-01-27T10:56:19Z high osmolality @@ -44225,13 +42641,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer whose structure which does not deteriorate. + george 2009-02-03T11:14:54Z not degenerate @@ -44253,13 +42664,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces. + quality PATO:0002039 @@ -44278,13 +42684,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface. + Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx quality PATO:0002040 @@ -44336,13 +42737,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An anterior-posterior diameter quality which is relatively small. + low anterior-posterior diameter quality PATO:0002042 @@ -44374,13 +42770,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An anterior-posterior diameter quality which is relatively large. + high anterior-posterior diameter quality PATO:0002043 @@ -44572,13 +42963,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An occurrence which is relatively high. + George Gkoutos 2009-03-26T11:10:11Z increased incidence @@ -44611,13 +42997,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An occurrence which is relatively low. + George Gkoutos 2009-03-26T11:12:35Z decreased incidence @@ -44694,13 +43075,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fragility which is relatively high. + George Gkoutos 2009-03-26T04:01:37Z quality @@ -44734,13 +43110,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A fragility which is relatively low. + George Gkoutos 2009-03-26T04:02:14Z quality @@ -44774,13 +43145,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An area which is relatively high. + George Gkoutos 2009-03-30T04:11:43Z quality @@ -44813,13 +43179,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An area which is relatively low. + George Gkoutos 2009-03-30T04:12:11Z quality @@ -45018,13 +43379,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration. + George Gkoutos 2009-07-01T02:31:53Z quality @@ -45046,13 +43402,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration. + George Gkoutos 2009-07-01T02:33:41Z quality @@ -45110,13 +43461,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An affinity which is relatively high. + George Gkoutos 2009-09-18T01:29:42Z quality @@ -45151,13 +43497,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An affinity which is relatively low. + George Gkoutos 2009-09-18T01:30:11Z quality @@ -45216,13 +43557,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An avidity which is relatively high. + George Gkoutos 2009-09-18T01:45:56Z quality @@ -45257,13 +43593,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An avidity which is relatively low. + George Gkoutos 2009-09-18T01:45:59Z quality @@ -45772,13 +44103,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type. + george 2009-10-05T12:58:54Z quality @@ -45800,13 +44126,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A cellular quality inhering in a bearer by virtue of having not yet acquired a special structure of function. + george 2009-10-05T12:59:21Z quality @@ -46075,13 +44396,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes. + george 2009-10-05T03:37:05Z PATO:0000649 @@ -46684,14 +45000,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer being suitable for use as food. + george 2009-10-26T01:21:34Z quality @@ -46714,13 +45025,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food. + george 2009-10-26T01:22:27Z quality @@ -46804,13 +45110,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A radiopacity that is relatively high. + george 2009-10-30T03:30:39Z quality @@ -46844,13 +45145,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A radiopacity that is relatively low. + george 2009-10-30T03:31:31Z quality @@ -46907,13 +45203,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A virulence that is relatively low. + george 2009-10-30T05:05:02Z attenuated @@ -46947,13 +45238,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A virulence that is relatively high. + george 2009-10-30T05:13:10Z quality @@ -47864,14 +46150,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone. + George Gkoutos 2010-03-10T03:25:59Z quality @@ -47892,13 +46173,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic. + George Gkoutos 2010-03-10T03:26:41Z quality @@ -47964,14 +46240,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge. + George Gkoutos 2010-03-10T03:30:06Z quality @@ -47992,13 +46263,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge. + George Gkoutos 2010-03-10T03:30:39Z quality @@ -48530,14 +46796,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group. + george 2010-07-09T01:50:14Z quality @@ -48570,13 +46831,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups. + george 2010-07-09T01:51:52Z hyperphosphorylated @@ -48610,13 +46866,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully. + george 2010-07-09T01:54:22Z hypophosporylated @@ -49129,13 +47380,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A force which relative high. + george 2010-08-04T11:12:20Z increased force amplitude @@ -49169,13 +47415,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A force which is relative low. + george 2010-08-04T11:13:13Z decreased force amplitude @@ -49225,14 +47466,9 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A degree of pigmentation quality inhering in a bearer by virtue of the bearer's having substances produced by living organisms that have a color resulting from selective color absorption. + george 2010-08-09T04:16:49Z quality @@ -49254,13 +47490,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A degree of pigmentation quality inhering in a bearer by virtue of the bearer's lacking substances produced by living organisms that have a color resulting from selective color absorption. + george 2010-08-09T04:17:04Z depigmented @@ -49295,13 +47526,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A degree of pigmentation quality that is relatively high. + george 2010-08-09T04:17:19Z hyperpigmented @@ -49336,13 +47562,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A degree of pigmentation quality that is relative low. + george 2010-08-09T04:17:37Z hypopigmented @@ -49611,13 +47832,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group. + george 2010-09-16T09:04:21Z quality @@ -49760,13 +47976,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner. + george 2010-10-26T02:00:20Z accumulated @@ -49789,13 +48000,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An accumulation which is relative low. + george 2010-10-26T02:04:45Z quality @@ -50039,13 +48245,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mobility which is relative high. + george 2011-03-09T09:16:03Z quality @@ -50078,13 +48279,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A mobility which is relative low. + george 2011-03-09T09:16:47Z quality @@ -50127,13 +48323,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity. + george 2011-03-10T09:07:57Z quality @@ -50154,13 +48345,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity. + george 2011-03-10T09:08:37Z quality @@ -50193,13 +48379,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elasticity which is relatively high. + George Gkoutos 2011-03-30T11:50:21Z quality @@ -50232,13 +48413,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An elasticity which is relatively low. + George Gkoutos 2011-03-30T11:50:39Z quality @@ -50434,13 +48610,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A cellular motility which is lower relative to the normal or average. + quality PATO:0002297 @@ -50471,13 +48642,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A cellular motility which is higher relative to the normal or average. + quality PATO:0002298 @@ -50531,12 +48697,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - @@ -50544,6 +48704,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality that has a value that is increased compared to normal or average. + George Gkoutos 2011-06-16T06:39:43Z quality @@ -50574,12 +48735,6 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - @@ -50587,6 +48742,7 @@ Association is weaker than correlation or proportionality. These relations may b A quality that has a value that is decreased compared to normal or average. + George Gkoutos 2011-06-16T06:40:15Z quality @@ -50618,13 +48774,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a process that has a value that is decreased compared to normal or average. + George Gkoutos 2011-06-16T06:50:59Z quality @@ -50656,13 +48807,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of an object that has a value that is decreased compared to normal or average. + George Gkoutos 2011-06-16T06:51:54Z quality @@ -50694,13 +48840,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a process that has a value that is increased compared to normal or average. + George Gkoutos 2011-06-16T06:53:08Z quality @@ -50732,13 +48873,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of an object that has a value that is increased compared to normal or average. + George Gkoutos 2011-06-16T06:54:01Z quality @@ -51095,12 +49231,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + George Gkoutos 2011-10-12T12:50:59Z quality @@ -51114,12 +49245,7 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - + George Gkoutos 2011-10-12T12:51:19Z quality @@ -51245,13 +49371,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An angle which is relatively high. + George Gkoutos 2011-11-23T12:06:38Z quality @@ -51285,13 +49406,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - An angle which is relatively low. + George Gkoutos 2011-11-23T12:06:54Z quality @@ -51355,13 +49471,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact. + gkoutos 2012-01-31T12:28:16Z quality @@ -51383,13 +49494,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact. + gkoutos 2012-01-31T12:28:57Z quality @@ -51423,13 +49529,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A adhesivity which is relatively high. + gkoutos 2012-01-31T12:32:43Z quality @@ -51462,13 +49563,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A adhesivity which is relatively low. + gkoutos 2012-01-31T12:42:22Z quality @@ -51887,13 +49983,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of an physical object that is currently realizing one of its functions. + gkoutos 2012-01-31T04:52:04Z quality @@ -51914,13 +50005,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality of a physical object that is currently realizing none of its functions. + gkoutos 2012-01-31T04:52:14Z quality @@ -52061,13 +50147,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tendency which is relatively high. + gkoutos 2012-03-16T06:31:57Z quality @@ -52102,13 +50183,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tendency which is relatively low. + gkoutos 2012-03-16T06:32:57Z quality @@ -52152,13 +50228,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width. + gkoutos 2012-04-18T06:31:29Z quality @@ -52410,13 +50481,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structure quality inhering in a bearer by virtue of the bearer's being filled with air. + gkoutos 2012-07-05T02:55:10Z air-filled @@ -52438,13 +50504,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A structure quality inhering in a bearer by virtue of the bearer's being not filed with air. + gkoutos 2012-07-05T02:56:07Z quality @@ -52562,13 +50623,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A waxiness which is relatively high. + gkoutos 2012-07-05T03:18:03Z quality @@ -52601,13 +50657,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A waxiness which is relatively low. + gkoutos 2012-07-05T03:18:14Z quality @@ -52828,13 +50879,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tolerance quality inhering in a bearer by virtue of the bearer's increased ability to endure a stimulus. + gkoutos 2012-11-15T05:32:07Z quality @@ -52868,13 +50914,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus. + gkoutos 2012-11-15T05:33:05Z quality @@ -53888,13 +51929,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures. + gkoutos 2013-01-29T10:59:42Z quality @@ -53915,13 +51951,8 @@ Association is weaker than correlation or proportionality. These relations may b - - - - - - A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures. + gkoutos 2013-01-29T11:00:20Z quality @@ -54136,13 +52167,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed. + gkoutos 2013-04-08T08:43:31Z quality @@ -54544,13 +52570,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position. + gkoutos 2013-09-15T12:03:45Z quality @@ -54583,13 +52604,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position. + gkoutos 2013-09-15T12:05:06Z quality @@ -55000,13 +53016,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally. + gkoutos 2013-10-10T05:12:15Z anterodorsally directed @@ -55072,13 +53083,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distally. + gkoutos 2013-10-10T05:14:37Z distally directed @@ -55100,13 +53106,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally. + gkoutos 2013-10-10T05:15:24Z dorsally directed @@ -55304,13 +53305,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally. + gkoutos 2013-10-10T05:19:36Z posterodorsally directed @@ -55782,13 +53778,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally. + segerdel 2014-03-11T11:28:39Z antero-distal orientation @@ -55809,13 +53800,8 @@ Note: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', - - - - - - An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally. + segerdel 2014-03-11T11:29:22Z postero-distal orientation @@ -56457,13 +54443,8 @@ height'). - - - - - - A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts. + wasila.dahdul 2014-09-25T15:11:47Z quality @@ -56484,13 +54465,8 @@ height'). - - - - - - A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities. + wasila.dahdul 2014-09-25T15:12:35Z quality @@ -56953,13 +54929,8 @@ height'). - - - - - - A decrease in the ability of a process to produce its output. + cjm quality PATO:0015003 @@ -56991,13 +54962,8 @@ height'). - - - - - - A increase in the ability of a process to produce its output. + cjm quality PATO:0015004 @@ -57141,13 +55107,8 @@ height'). - - - - - - An increase in humidity. + quality humid PATO:0015010 @@ -57179,13 +55140,8 @@ height'). - - - - - - An decrease in humidity. + quality PATO:0015011 @@ -57254,13 +55210,8 @@ height'). - - - - - - An increase in illumination. + quality illuminated PATO:0015014 @@ -57292,13 +55243,8 @@ height'). - - - - - - An decrease in illumination. + quality PATO:0015015 @@ -57450,13 +55396,8 @@ height'). - - - - - - An increase in combustibility. + combustible quality PATO:0015022 @@ -57482,13 +55423,8 @@ height'). - - - - - - An decrease in combustibility. + quality noncombustible PATO:0015023 @@ -57545,13 +55481,8 @@ height'). - - - - - - An decrease in porosity. + quality PATO:0015025 @@ -57634,13 +55565,8 @@ height'). - - - - - - A decrease in stability. + quality PATO:0015028 @@ -57782,14 +55708,9 @@ height'). - - - - - - A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration. + pbuttigieg 2015-09-01T16:18:57Z undrinkable @@ -57810,13 +55731,8 @@ height'). - - - - - - A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration. + pbuttigieg 2015-09-01T16:19:02Z drinkable @@ -61016,13 +58932,8 @@ height'). - - - - - - North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west. + Luke Slater 2017-12-22T14:16:43Z quality @@ -61043,13 +58954,8 @@ height'). - - - - - - East is one of the four cardinal directions or points of the compass. It is the opposite direction from west. + Luke Slater 2017-12-22T14:16:43Z quality @@ -61070,13 +58976,8 @@ height'). - - - - - - South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west. + Luke Slater 2017-12-22T14:16:43Z quality @@ -61097,13 +58998,8 @@ height'). - - - - - - West is one of the four cardinal directions or points of the compass. It is the opposite direction from east. + Luke Slater 2017-12-22T14:16:43Z quality @@ -61351,28 +59247,6 @@ This interpretation is *not* the same as an at-all-times relation - - - - x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). - is_opposite_of - quality - 'increase in temperature' is-opposite-of 'decrease in temperature' - is_opposite_of - is_opposite_of - 'anterior end of organism' is-opposite-of 'posterior end of organism' - is opposite of - RO:0002604 - - - - + Manually annotated by ChEBI Team @@ -122,6 +123,14 @@ + + + + has_synonym_type + + + + diff --git a/imports/go_import.json b/imports/go_import.json index 804afece..868a747f 100644 --- a/imports/go_import.json +++ b/imports/go_import.json @@ -141,6 +141,15 @@ }, "type" : "CLASS", "lbl" : "molecular_function" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_aspergillus", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Aspergillus GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/GO_0010646", "meta" : { @@ -230,6 +239,15 @@ }, "type" : "CLASS", "lbl" : "positive regulation of cell communication" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_generic", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Generic GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/GO_1902533", "meta" : { @@ -820,6 +838,15 @@ }, "type" : "PROPERTY", "lbl" : "part of" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_metagenomics", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Metagenomics GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/GO_0016740", "meta" : { @@ -1436,6 +1463,25 @@ }, "type" : "CLASS", "lbl" : "positive regulation of cellular metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0010469", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] + }, + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "regulation of receptor activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of signaling receptor activity" }, { "id" : "http://purl.obolibrary.org/obo/GO_0048523", "meta" : { @@ -1785,6 +1831,15 @@ }, "type" : "CLASS", "lbl" : "negative regulation of protein binding" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_plant", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Plant GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "type" : "PROPERTY", @@ -2012,6 +2067,15 @@ }, "type" : "CLASS", "lbl" : "positive regulation of catalytic activity" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_yeast", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Yeast GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/IAO_0100001", "type" : "PROPERTY", @@ -2153,6 +2217,30 @@ }, "type" : "CLASS", "lbl" : "negative regulation of catalytic activity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0060089", + "meta" : { + "definition" : { + "val" : "A compound molecular function in which an effector function is controlled by one or more regulatory components.", + "xrefs" : [ "GOC:dos", "GOC:pdt" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + } ] + }, + "type" : "CLASS", + "lbl" : "molecular transducer activity" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_mouse", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Mouse GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000066", "meta" : { @@ -2196,6 +2284,28 @@ "id" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "type" : "PROPERTY", "lbl" : "has_alternative_id" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "FlyBase Drosophila GO ribbon slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasSynonymType", + "type" : "PROPERTY", + "lbl" : "has_synonym_type" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_pombe", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Fission yeast GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/GO_0051716", "meta" : { @@ -2408,6 +2518,15 @@ }, "type" : "CLASS", "lbl" : "negative regulation of phosphorylation" + }, { + "id" : "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Term not to be used for direct manual annotation" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/GO_0032991", "meta" : { @@ -2549,6 +2668,40 @@ }, "type" : "CLASS", "lbl" : "signal transduction" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_agr", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "AGR slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_2000272", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity.", + "xrefs" : [ "GOC:obol" ] + }, + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "negative regulation of receptor activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-12-02T09:28:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "rfoulger" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of signaling receptor activity" }, { "id" : "http://purl.obolibrary.org/obo/GO_0120025", "meta" : { @@ -2569,6 +2722,26 @@ }, "type" : "CLASS", "lbl" : "plasma membrane bounded cell projection" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_2000273", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of signaling receptor activity.", + "xrefs" : [ "GOC:obol" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "rfoulger" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-12-02T09:28:50Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of signaling receptor activity" }, { "id" : "http://purl.obolibrary.org/obo/GO_0043549", "meta" : { @@ -2837,10 +3010,28 @@ "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref", "type" : "PROPERTY", "lbl" : "database_cross_reference" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_chembl", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "ChEMBL protein targets summary" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "type" : "PROPERTY", "lbl" : "shorthand" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_candida", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Candida GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/GO_0051174", "meta" : { @@ -2860,6 +3051,15 @@ }, "type" : "CLASS", "lbl" : "regulation of phosphorus metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_pir", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "PIR GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/GO_0023056", "meta" : { @@ -3210,6 +3410,15 @@ }, "type" : "CLASS", "lbl" : "plasma membrane region" + }, { + "id" : "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Term not to be used for direct annotation" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/GO_0023052", "meta" : { @@ -3576,6 +3785,42 @@ }, "type" : "CLASS", "lbl" : "negative regulation of signal transduction" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0038023", + "meta" : { + "definition" : { + "val" : "Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.", + "xrefs" : [ "GOC:bf", "GOC:signaling" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_mouse" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "receptor activity involved in signal transduction", + "xrefs" : [ "GOC:bf" ] + }, { + "pred" : "hasBroadSynonym", + "val" : "receptor activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "rfoulger" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-08-01T02:45:27Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0004872" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0019041" + } ] + }, + "type" : "CLASS", + "lbl" : "signaling receptor activity" }, { "id" : "http://purl.obolibrary.org/obo/GO_0051100", "meta" : { @@ -3613,13 +3858,13 @@ "lbl" : "subset_property" } ], "edges" : [ { - "sub" : "http://purl.obolibrary.org/obo/GO_0048523", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0009987" - }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048522", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", "obj" : "http://purl.obolibrary.org/obo/GO_0009987" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048523", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0110165", "pred" : "is_a", @@ -3632,6 +3877,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0098772", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0065009" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_2000272", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044092" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0010646", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -3660,6 +3909,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0019220", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051174" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0060089", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0003674" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0033673", "pred" : "is_a", @@ -3708,18 +3961,22 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0032991", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005575" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0044237", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051100", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0005488" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044237", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0035556", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010469", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0038023" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0042327", "pred" : "is_a", @@ -3740,14 +3997,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_1900122", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0032092" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0010562", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0051174" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0031325", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009893" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010562", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051174" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0035556", "pred" : "http://purl.obolibrary.org/obo/BFO_0000066", @@ -3864,10 +4121,18 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009967", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009966" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010469", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0009966" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048584", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048518" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_2000273", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044093" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048522", "pred" : "is_a", @@ -3884,14 +4149,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005575" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0048518", - "pred" : "http://purl.obolibrary.org/obo/RO_0002213", - "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048519", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0008150" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048518", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0016020", "pred" : "is_a", @@ -3904,6 +4169,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0065009", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0065007" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_2000272", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010469" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043086", "pred" : "is_a", @@ -4036,6 +4305,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0042327", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0042325" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_2000272", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0038023" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009893", "pred" : "is_a", @@ -4108,6 +4381,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0032091", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043393" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_2000273", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010469" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0042995", "pred" : "is_a", @@ -4168,14 +4445,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051347", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051338" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009968", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009967", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009968", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900122", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -4204,14 +4481,18 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0043085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0044093" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043085", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0003824" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043086", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0003824" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0043085", - "pred" : "http://purl.obolibrary.org/obo/RO_0002213", - "obj" : "http://purl.obolibrary.org/obo/GO_0003824" + "sub" : "http://purl.obolibrary.org/obo/GO_0010469", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0065009" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051338", "pred" : "is_a", @@ -4408,18 +4689,22 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0043229", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0005622" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0010563", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0006793" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0010562", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", "obj" : "http://purl.obolibrary.org/obo/GO_0006793" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010563", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0006793" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0042325", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0019220" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0016301", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0010647", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -4428,10 +4713,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0010648", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0007154" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0016301", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0071944", "pred" : "is_a", @@ -4468,6 +4749,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0098797", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0005886" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_2000273", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0038023" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048584", "pred" : "is_a", @@ -4512,6 +4797,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0043226", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0110165" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0038023", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0060089" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900121", "pred" : "is_a", @@ -4522,10 +4811,17 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ ], - "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29/imports/go_import.owl" + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-31/imports/go_import.owl" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010469", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0038023" + } ] + }, { "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051100", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { @@ -4540,17 +4836,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0005102" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048522", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048523", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0009987" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048523", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048522", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0009987" } ] }, { @@ -4679,6 +4975,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0044237" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_2000273", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0038023" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/GO_1900120", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], @@ -4764,17 +5067,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0005488" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048519", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048518", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048518", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048519", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" } ] }, { @@ -4785,31 +5088,31 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0009987" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009967", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009968", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009968", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009967", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010647", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010648", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007154" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010648", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010647", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007154" } ] }, { @@ -4848,17 +5151,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043086", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043085", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043085", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043086", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" } ] }, { @@ -4889,6 +5192,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0003674" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_2000272", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0038023" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/GO_0120025", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0042995" ], diff --git a/imports/go_import.obo b/imports/go_import.obo index 1c196452..2e4ba481 100644 --- a/imports/go_import.obo +++ b/imports/go_import.obo @@ -1,19 +1,19 @@ format-version: 1.2 -data-version: pato/releases/2019-10-29/imports/go_import.owl -subsetdef: gocheck_do_not_annotate "" -subsetdef: gocheck_do_not_manually_annotate "" -subsetdef: goslim_agr "" -subsetdef: goslim_aspergillus "" -subsetdef: goslim_candida "" -subsetdef: goslim_chembl "" -subsetdef: goslim_flybase_ribbon "" -subsetdef: goslim_generic "" -subsetdef: goslim_metagenomics "" -subsetdef: goslim_mouse "" -subsetdef: goslim_pir "" -subsetdef: goslim_plant "" -subsetdef: goslim_pombe "" -subsetdef: goslim_yeast "" +data-version: pato/releases/2019-10-31/imports/go_import.owl +subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation" +subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation" +subsetdef: goslim_agr "AGR slim" +subsetdef: goslim_aspergillus "Aspergillus GO slim" +subsetdef: goslim_candida "Candida GO slim" +subsetdef: goslim_chembl "ChEMBL protein targets summary" +subsetdef: goslim_flybase_ribbon "FlyBase Drosophila GO ribbon slim" +subsetdef: goslim_generic "Generic GO slim" +subsetdef: goslim_metagenomics "Metagenomics GO slim" +subsetdef: goslim_mouse "Mouse GO slim" +subsetdef: goslim_pir "PIR GO slim" +subsetdef: goslim_plant "Plant GO slim" +subsetdef: goslim_pombe "Fission yeast GO slim" +subsetdef: goslim_yeast "Yeast GO slim" ontology: pato/imports/go_import [Term] @@ -440,6 +440,18 @@ is_a: GO:0008150 ! biological_process created_by: janelomax creation_date: 2012-12-11T16:56:55Z +[Term] +id: GO:0010469 +name: regulation of signaling receptor activity +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity." [GOC:dph, GOC:tb] +synonym: "regulation of receptor activity" BROAD [] +is_a: GO:0009966 ! regulation of signal transduction +is_a: GO:0065009 ! regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0038023 ! signaling receptor activity +relationship: regulates GO:0038023 ! signaling receptor activity + [Term] id: GO:0010562 name: positive regulation of phosphorus metabolic process @@ -842,7 +854,23 @@ creation_date: 2010-05-14T01:14:37Z [Term] id: GO:0038023 +name: signaling receptor activity +namespace: molecular_function alt_id: GO:0004872 +alt_id: GO:0019041 +def: "Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response." [GOC:bf, GOC:signaling] +subset: goslim_agr +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_metagenomics +subset: goslim_mouse +subset: goslim_pir +subset: goslim_plant +synonym: "receptor activity" BROAD [] +synonym: "receptor activity involved in signal transduction" EXACT [GOC:bf] +is_a: GO:0060089 ! molecular transducer activity +created_by: rfoulger +creation_date: 2011-08-01T02:45:27Z [Term] id: GO:0042325 @@ -1407,6 +1435,15 @@ subset: gocheck_do_not_manually_annotate is_a: GO:0009987 ! cellular process is_a: GO:0050896 ! response to stimulus +[Term] +id: GO:0060089 +name: molecular transducer activity +namespace: molecular_function +def: "A compound molecular function in which an effector function is controlled by one or more regulatory components." [GOC:dos, GOC:pdt] +subset: gocheck_do_not_manually_annotate +subset: goslim_pir +is_a: GO:0003674 ! molecular_function + [Term] id: GO:0065007 name: biological regulation @@ -1673,6 +1710,33 @@ relationship: positively_regulates GO:0035556 ! intracellular signal transductio created_by: bf creation_date: 2013-12-02T11:33:10Z +[Term] +id: GO:2000272 +name: negative regulation of signaling receptor activity +namespace: biological_process +def: "Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity." [GOC:obol] +synonym: "negative regulation of receptor activity" BROAD [] +is_a: GO:0010469 ! regulation of signaling receptor activity +is_a: GO:0044092 ! negative regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0038023 ! signaling receptor activity +relationship: negatively_regulates GO:0038023 ! signaling receptor activity +created_by: rfoulger +creation_date: 2010-12-02T09:28:47Z + +[Term] +id: GO:2000273 +name: positive regulation of signaling receptor activity +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of signaling receptor activity." [GOC:obol] +is_a: GO:0010469 ! regulation of signaling receptor activity +is_a: GO:0044093 ! positive regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0038023 ! signaling receptor activity +relationship: positively_regulates GO:0038023 ! signaling receptor activity +created_by: rfoulger +creation_date: 2010-12-02T09:28:50Z + [Typedef] id: has_part name: has part diff --git a/imports/go_import.owl b/imports/go_import.owl index e81bfa1c..fb951ac4 100644 --- a/imports/go_import.owl +++ b/imports/go_import.owl @@ -11,7 +11,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -58,6 +58,7 @@ + Term not to be used for direct annotation @@ -66,6 +67,7 @@ + Term not to be used for direct manual annotation @@ -74,6 +76,7 @@ + AGR slim @@ -82,6 +85,7 @@ + Aspergillus GO slim @@ -90,6 +94,7 @@ + Candida GO slim @@ -98,6 +103,7 @@ + ChEMBL protein targets summary @@ -106,6 +112,7 @@ + FlyBase Drosophila GO ribbon slim @@ -114,6 +121,7 @@ + Generic GO slim @@ -122,6 +130,7 @@ + Metagenomics GO slim @@ -130,6 +139,7 @@ + Mouse GO slim @@ -138,6 +148,7 @@ + PIR GO slim @@ -146,6 +157,7 @@ + Plant GO slim @@ -154,6 +166,7 @@ + Fission yeast GO slim @@ -162,6 +175,7 @@ + Yeast GO slim @@ -277,6 +291,14 @@ + + + + has_synonym_type + + + + @@ -1317,6 +1339,44 @@ + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity. + regulation of receptor activity + biological_process + GO:0010469 + regulation of signaling receptor activity + + + + + Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity. + GOC:dph + GOC:tb + + + + @@ -2414,6 +2474,44 @@ + + + + + Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. + rfoulger + 2011-08-01T02:45:27Z + GO:0004872 + GO:0019041 + receptor activity + receptor activity involved in signal transduction + molecular_function + GO:0038023 + + + + + + + + signaling receptor activity + + + + + Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. + GOC:bf + GOC:signaling + + + + + receptor activity involved in signal transduction + GOC:bf + + + + @@ -2551,7 +2649,7 @@ A prolongation or process extending from a cell, e.g. a flagellum or axon. GOC:jl - http://www.cogsci.princeton.edu/~wn/ + http://www.cogsci.princeton.edu/~wn/ @@ -3868,6 +3966,27 @@ + + + + + A compound molecular function in which an effector function is controlled by one or more regulatory components. + molecular_function + GO:0060089 + + + molecular transducer activity + + + + + A compound molecular function in which an effector function is controlled by one or more regulatory components. + GOC:dos + GOC:pdt + + + + @@ -4977,6 +5096,83 @@ upregulation of signal transduction via intracellular signaling cascade GOC:TermGenie + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity. + rfoulger + 2010-12-02T09:28:47Z + negative regulation of receptor activity + biological_process + GO:2000272 + negative regulation of signaling receptor activity + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity. + GOC:obol + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of signaling receptor activity. + rfoulger + 2010-12-02T09:28:50Z + biological_process + GO:2000273 + positive regulation of signaling receptor activity + + + + + Any process that activates or increases the frequency, rate or extent of signaling receptor activity. + GOC:obol + diff --git a/imports/pco_import.json b/imports/pco_import.json index fa2b8bde..8a20121f 100644 --- a/imports/pco_import.json +++ b/imports/pco_import.json @@ -345,6 +345,23 @@ }, "type" : "CLASS", "lbl" : "Gnathostomata " + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002286", + "meta" : { + "definition" : { + "val" : "Inverse of developmentally preceded by", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally succeeded by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000014", "meta" : { @@ -725,6 +742,57 @@ }, "type" : "PROPERTY", "lbl" : "acts upstream of or within" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002385", + "meta" : { + "definition" : { + "val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to developmentally contribute to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002387", + "meta" : { + "definition" : { + "val" : "x has the potential to develop into y iff x develops into y or if x is capable of developing into y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to develop into" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002388", + "meta" : { + "definition" : { + "val" : "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to directly develop into" }, { "id" : "http://purl.obolibrary.org/obo/RO_0000086", "meta" : { @@ -745,6 +813,23 @@ }, "type" : "PROPERTY", "lbl" : "has quality" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002384", + "meta" : { + "definition" : { + "val" : "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has developmental potential involving" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002263", "meta" : { @@ -835,6 +920,32 @@ }, "type" : "PROPERTY", "lbl" : "has positive regulatory component activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002258", + "meta" : { + "definition" : { + "val" : "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "In general you should not use this relation to make assertions - use one of the more specific relations below this one" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally preceded by" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002379", "meta" : { @@ -855,6 +966,10 @@ }, "type" : "PROPERTY", "lbl" : "spatially coextensive with" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002259", + "type" : "PROPERTY", + "lbl" : "defined by inverse" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002017", "meta" : { @@ -888,6 +1003,26 @@ }, "type" : "PROPERTY", "lbl" : "has component process" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000424", + "meta" : { + "definition" : { + "val" : "A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "ObjectProperty: RO_0002104\nLabel: has plasma membrane part\nAnnotations: IAO_0000424 \"http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.org/obo/owl/GO#GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)\"\n" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "expand expression to" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "expand expression to" }, { "id" : "http://purl.obolibrary.org/obo/IAO_0000423", "meta" : { @@ -1004,6 +1139,26 @@ }, "type" : "CLASS", "lbl" : "red" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002254", + "meta" : { + "definition" : { + "val" : "x has developmental contribution from y iff x has some part z such that z develops from y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has developmental contribution from" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002013", "meta" : { @@ -1021,6 +1176,24 @@ }, "type" : "PROPERTY", "lbl" : "has regulatory component activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002255", + "meta" : { + "definition" : { + "val" : "inverse of has developmental contribution from", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally contributes to" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002014", "meta" : { @@ -1107,6 +1280,16 @@ }, "type" : "CLASS", "lbl" : "cell part" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016020", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "membrane" }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002297", "meta" : { @@ -1278,6 +1461,25 @@ }, "type" : "CLASS", "lbl" : "Metazoa" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000600", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "elucidation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "person:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Person:Barry Smith" + } ] + }, + "type" : "PROPERTY", + "lbl" : "elucidation" }, { "id" : "http://purl.obolibrary.org/obo/PCO_0000031", "meta" : { @@ -2422,6 +2624,26 @@ }, "type" : "PROPERTY", "lbl" : "negatively regulates" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002575", + "meta" : { + "definition" : { + "val" : "relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The general property hierarchy is:\n\n \"directly P\" SubPropertyOf \"P\"\n Transitive(P)\n\nWhere we have an annotation assertion\n\n \"directly P\" \"is direct form of\" \"P\"" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002423", + "val" : "If we have the annotation P is-direct-form-of Q, and we have inverses P' and Q', then it follows that P' is-direct-form-of Q'" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is direct form of" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002333", "meta" : { @@ -2615,6 +2837,35 @@ }, "type" : "PROPERTY", "lbl" : "mereotopologically related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002202", + "meta" : { + "definition" : { + "val" : "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This is the transitive form of the develops from relation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "develops from" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002324", "meta" : { @@ -2632,6 +2883,30 @@ }, "type" : "PROPERTY", "lbl" : "developmentally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002203", + "meta" : { + "definition" : { + "val" : "inverse of develops from", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" + } ] + }, + "type" : "PROPERTY", + "lbl" : "develops into" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002566", "meta" : { @@ -2918,6 +3193,26 @@ }, "type" : "PROPERTY", "lbl" : "has obsolescence reason" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000232", + "meta" : { + "definition" : { + "val" : "An administrative note of use for a curator but of no use for a user", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "curator note" + } ] + }, + "type" : "PROPERTY", + "lbl" : "curator note" }, { "id" : "http://purl.obolibrary.org/obo/IAO_0000111", "meta" : { @@ -3645,6 +3940,16 @@ }, "type" : "INDIVIDUAL", "lbl" : "requires discussion" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000017", + "meta" : { + "definition" : { + "val" : "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "realizable entity" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002090", "meta" : { @@ -3811,6 +4116,25 @@ "id" : "http://purl.obolibrary.org/obo/BFO_0000006", "type" : "CLASS", "lbl" : "spatial region" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0010000", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Person:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Person:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has axiom id" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has axiom label" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002086", "meta" : { @@ -3941,6 +4265,10 @@ }, "type" : "CLASS", "lbl" : "nucleus" + }, { + "id" : "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", + "type" : "PROPERTY", + "lbl" : "eco subset" }, { "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref", "type" : "PROPERTY", @@ -4213,6 +4541,10 @@ }, "type" : "PROPERTY", "lbl" : "has component" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0050896", + "type" : "CLASS", + "lbl" : "response to stimulus" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000027", "type" : "CLASS", @@ -4437,6 +4769,10 @@ "lbl" : "root" } ], "edges" : [ { + "sub" : "http://purl.obolibrary.org/obo/GO_0016020", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CARO_0000014" + }, { "sub" : "http://purl.obolibrary.org/obo/NCBITaxon_1338369", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_8287" @@ -4456,10 +4792,18 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002509", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002506" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002202", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002203" }, { "sub" : "http://purl.obolibrary.org/obo/IAO_0000421", "pred" : "type", "obj" : "http://purl.obolibrary.org/obo/IAO_0000409" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002384", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002324" }, { "sub" : "http://purl.obolibrary.org/obo/IAO_0000423", "pred" : "type", @@ -4652,6 +4996,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002024", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002022" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002387", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002384" }, { "sub" : "http://purl.obolibrary.org/obo/IAO_0000124", "pred" : "type", @@ -4672,6 +5020,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002335", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002334" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002255", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002286" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0003824", "pred" : "is_a", @@ -4752,6 +5104,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0008150", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/BFO_0000015" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002203", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002286" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000001", "pred" : "is_a", @@ -4836,6 +5192,10 @@ "sub" : "http://purl.obolibrary.org/obo/ENVO_01001055", "pred" : "http://purl.obolibrary.org/obo/RO_0002507", "obj" : "http://purl.obolibrary.org/obo/CARO_0000006" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "sub" : "http://purl.obolibrary.org/obo/CL_0000000", "pred" : "is_a", @@ -4844,18 +5204,22 @@ "sub" : "http://purl.obolibrary.org/obo/PO_0009011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PO_0025131" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002598", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002596" }, { "sub" : "http://purl.obolibrary.org/obo/NCBITaxon_33213", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_6072" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002598", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002596" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002015", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002336" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002254", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002258" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0016772", "pred" : "is_a", @@ -4912,10 +5276,18 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002017", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002018" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002388", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002387" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002215", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002216" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002255", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002385" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002297", "pred" : "inverseOf", @@ -4936,6 +5308,10 @@ "sub" : "http://purl.obolibrary.org/obo/IAO_0000121", "pred" : "type", "obj" : "http://purl.obolibrary.org/obo/IAO_0000078" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002202", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002258" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002508", "pred" : "subPropertyOf", @@ -5004,14 +5380,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0001018", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0001019" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0000080", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001415", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002003" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0000080", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002217", "pred" : "subPropertyOf", @@ -5160,14 +5536,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002333", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002447", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002436" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000027", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/BFO_0000040" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002447", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002436" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000040", "pred" : "is_a", @@ -5188,6 +5564,10 @@ "sub" : "http://purl.obolibrary.org/obo/PCO_0000028", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PCO_0000000" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002286", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002384" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", "pred" : "inverseOf", @@ -5204,6 +5584,10 @@ "sub" : "http://purl.obolibrary.org/obo/NCBITaxon_40674", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_32524" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002254", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002255" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001236", "pred" : "is_a", @@ -5224,6 +5608,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002212", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0050896", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/ENVO_01000313", "pred" : "is_a", @@ -5336,10 +5724,18 @@ "sub" : "http://purl.obolibrary.org/obo/PCO_0000027", "pred" : "http://purl.obolibrary.org/obo/RO_0002351", "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002203", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002388" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002450", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002448" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002203", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002387" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000161", "pred" : "is_a", @@ -5412,6 +5808,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002211", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002334" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0016020", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044464" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002448", "pred" : "subPropertyOf", @@ -5504,6 +5904,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002412", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002090" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002258", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002324" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002385", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002384" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002297", "pred" : "subPropertyOf", @@ -5528,6 +5936,10 @@ "sub" : "http://purl.obolibrary.org/obo/NCBITaxon_314293", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_376913" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002258", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002286" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000402", "pred" : "is_a", @@ -5654,7 +6066,7 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ ], - "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29/imports/pco_import.owl" + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-31/imports/pco_import.owl" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ { @@ -5744,6 +6156,10 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0003001", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000003" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002233", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], @@ -5775,6 +6191,10 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002506", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002501", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], @@ -5813,6 +6233,10 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002434", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002258", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002479", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], @@ -5876,6 +6300,9 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002264", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002418" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002255", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002203", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002596", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002211" ] @@ -5912,6 +6339,9 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002597", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002202" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002449", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002630", "http://purl.obolibrary.org/obo/RO_0002333" ] diff --git a/imports/pco_import.obo b/imports/pco_import.obo index 0c8554e5..4db60253 100644 --- a/imports/pco_import.obo +++ b/imports/pco_import.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: pato/releases/2019-10-29/imports/pco_import.owl +data-version: pato/releases/2019-10-31/imports/pco_import.owl subsetdef: ro-eco "" subsetdef: RO:0002259 "" ontology: pato/imports/pco_import @@ -44,6 +44,13 @@ def: "An occurrent that has temporal proper parts and for some time t, p s-depen def: "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/083-003"} is_a: BFO:0000003 ! occurrent +[Term] +id: BFO:0000017 +name: realizable entity +def: "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances." [] +is_a: BFO:0000020 ! specifically dependent continuant +disjoint_from: BFO:0000019 ! quality + [Term] id: BFO:0000019 name: quality @@ -272,6 +279,13 @@ synonym: "single organism process" RELATED [] synonym: "single-organism process" RELATED [] is_a: BFO:0000015 ! process +[Term] +id: GO:0016020 +name: membrane +is_a: CARO:0000014 ! cell part +is_a: GO:0044464 ! cell part +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl + [Term] id: GO:0016301 name: kinase activity @@ -299,6 +313,11 @@ name: cell part is_a: CARO:0000014 ! cell part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl +[Term] +id: GO:0050896 +name: response to stimulus +is_a: GO:0008150 ! biological_process + [Term] id: IAO:0000027 name: data item @@ -1262,6 +1281,36 @@ property_value: RO:0001900 RO:0001901 property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:Componency is_a: BFO:0000051 ! has part +[Typedef] +id: RO:0002202 +name: develops from +def: "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y" [] +comment: This is the transitive form of the develops from relation +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000117 "Melissa Haendel" xsd:string +property_value: IAO:0000117 "Terry Meehan" xsd:string +domain: BFO:0000004 ! independent continuant +range: BFO:0000004 ! independent continuant +is_transitive: true +is_a: RO:0002258 ! developmentally preceded by +inverse_of: RO:0002203 ! develops into + +[Typedef] +id: RO:0002203 +name: develops into +def: "inverse of develops from" [] +subset: RO:0002259 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000117 "Terry Meehan" xsd:string +is_transitive: true +is_a: RO:0002286 ! developmentally succeeded by +is_a: RO:0002387 ! has potential to develop into +is_a: RO:0002388 ! has potential to directly develop into + [Typedef] id: RO:0002211 name: regulates @@ -1397,6 +1446,44 @@ property_value: IAO:0000118 "produces" xsd:string is_a: RO:0000057 ! has participant inverse_of: RO:0002353 ! output of +[Typedef] +id: RO:0002254 +name: has developmental contribution from +def: "x has developmental contribution from y iff x has some part z such that z develops from y" [] +property_value: IAO:0000112 "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +domain: BFO:0000004 ! independent continuant +range: CARO:0000003 ! anatomical structure +holds_over_chain: BFO:0000051 RO:0002202 +is_a: RO:0002258 ! developmentally preceded by +inverse_of: RO:0002255 ! developmentally contributes to + +[Typedef] +id: RO:0002255 +name: developmentally contributes to +def: "inverse of has developmental contribution from" [] +subset: RO:0002259 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +holds_over_chain: RO:0002203 BFO:0000050 +is_a: RO:0002286 ! developmentally succeeded by +is_a: RO:0002385 ! has potential to developmentally contribute to + +[Typedef] +id: RO:0002258 +name: developmentally preceded by +def: "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p" [] +comment: This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "false" xsd:boolean +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "In general you should not use this relation to make assertions - use one of the more specific relations below this one" xsd:string +domain: BFO:0000002 ! continuant +range: BFO:0000002 ! continuant +is_a: RO:0002324 ! developmentally related to +inverse_of: RO:0002286 ! developmentally succeeded by + [Typedef] id: RO:0002263 name: acts upstream of @@ -1412,6 +1499,14 @@ synonym: "affects" RELATED [] holds_over_chain: RO:0002327 RO:0002418 is_a: RO:0002500 ! causal agent in +[Typedef] +id: RO:0002286 +name: developmentally succeeded by +def: "Inverse of developmentally preceded by" [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002384 ! has developmental potential involving + [Typedef] id: RO:0002304 name: causally upstream of, positive effect @@ -1599,6 +1694,38 @@ property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "This relation is added for formal completeness. It is unlikely to be used in many practical scenarios" xsd:string is_a: RO:0002131 ! overlaps +[Typedef] +id: RO:0002384 +name: has developmental potential involving +def: "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction)." [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002324 ! developmentally related to + +[Typedef] +id: RO:0002385 +name: has potential to developmentally contribute to +def: "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002384 ! has developmental potential involving + +[Typedef] +id: RO:0002387 +name: has potential to develop into +def: "x has the potential to develop into y iff x develops into y or if x is capable of developing into y" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002384 ! has developmental potential involving + +[Typedef] +id: RO:0002388 +name: has potential to directly develop into +def: "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002387 ! has potential to develop into + [Typedef] id: RO:0002404 name: causally downstream of diff --git a/imports/pco_import.owl b/imports/pco_import.owl index 20946f19..21265188 100644 --- a/imports/pco_import.owl +++ b/imports/pco_import.owl @@ -15,7 +15,7 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -172,7 +172,13 @@ We also have the outstanding issue of how to aim different definitions to differ - + + curator note + + An administrative note of use for a curator but of no use for a user + PERSON:Alan Ruttenberg + curator note + @@ -192,7 +198,16 @@ We also have the outstanding issue of how to aim different definitions to differ - + + expand expression to + ObjectProperty: RO_0002104 +Label: has plasma membrane part +Annotations: IAO_0000424 "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.org/obo/owl/GO#GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)" + + A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones + Chris Mungall + expand expression to + @@ -215,13 +230,25 @@ We also have the outstanding issue of how to aim different definitions to differ - + + elucidation + person:Alan Ruttenberg + Person:Barry Smith + Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms + elucidation + - + + has axiom id + Person:Alan Ruttenberg + Person:Alan Ruttenberg + A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI + has axiom label + @@ -264,14 +291,34 @@ We also have the outstanding issue of how to aim different definitions to differ + defined by inverse + + + + + + - + + relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y + The general property hierarchy is: + + "directly P" SubPropertyOf "P" + Transitive(P) + +Where we have an annotation assertion + + "directly P" "is direct form of" "P" + If we have the annotation P is-direct-form-of Q, and we have inverses P' and Q', then it follows that P' is-direct-form-of Q' + Chris Mungall + is direct form of + @@ -307,6 +354,7 @@ We also have the outstanding issue of how to aim different definitions to differ + eco subset @@ -1002,6 +1050,44 @@ range: spatial region or site (immaterial continuant) + + + + + + + + + + x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y + Chris Mungall + David Osumi-Sutherland + Melissa Haendel + Terry Meehan + This is the transitive form of the develops from relation + develops from + + + + + + + + + + + + + inverse of develops from + Chris Mungall + David Osumi-Sutherland + Terry Meehan + + develops into + + + + @@ -1195,6 +1281,62 @@ range: spatial region or site (immaterial continuant) + + + + + + + + + + + + Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong] + + x has developmental contribution from y iff x has some part z such that z develops from y + Chris Mungall + has developmental contribution from + + + + + + + + + + + + + + + inverse of has developmental contribution from + Chris Mungall + + developmentally contributes to + + + + + + + + + + + + + Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p + false + Chris Mungall + In general you should not use this relation to make assertions - use one of the more specific relations below this one + This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from + developmentally preceded by + + + + @@ -1224,6 +1366,18 @@ range: spatial region or site (immaterial continuant) + + + + + + Inverse of developmentally preceded by + Chris Mungall + developmentally succeeded by + + + + @@ -1586,6 +1740,54 @@ However, this is not possible in OWL. We instead make this relation a sub-relati + + + + + + x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction). + Chris Mungall + has developmental potential involving + + + + + + + + + + x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y + Chris Mungall + has potential to developmentally contribute to + + + + + + + + + + x has the potential to develop into y iff x develops into y or if x is capable of developing into y + Chris Mungall + has potential to develop into + + + + + + + + + + x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y + Chris Mungall + has potential to directly develop into + + + + @@ -2406,6 +2608,17 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances. + realizable entity + + + + @@ -3110,6 +3323,17 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + + membrane + + + + @@ -3169,6 +3393,15 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + response to stimulus + + + + diff --git a/imports/ro_import.json b/imports/ro_import.json index 460bee9c..124568db 100644 --- a/imports/ro_import.json +++ b/imports/ro_import.json @@ -11,603 +11,608 @@ "type" : "CLASS", "lbl" : "molecular_function" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002331", + "id" : "http://purl.obolibrary.org/obo/RO_0002297", "meta" : { - "definition" : { - "val" : "c involved_in p if and only if c enables some process p', and p' is part of p", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Involved_in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "enables part of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "actively involved in" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GOC:mtg_berkeley_2013" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "results_in_formation_of" } ] }, "type" : "PROPERTY", - "lbl" : "involved in" + "lbl" : "results in formation of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002211", + "id" : "http://purl.obolibrary.org/obo/RO_0002295", "meta" : { "definition" : { - "val" : "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.", + "val" : "p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss).", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Hill" + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "results_in_developmental_progression_of" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Ontology_extensions" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "results in developmental progression of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002604", + "meta" : { + "definition" : { + "val" : "x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x).", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'anterior end of organism' is-opposite-of 'posterior end of organism'" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Regulation precludes parthood; the regulatory process may not be within the regulated process." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Tanya Berardini" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", - "val" : "false" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "GO" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "regulates (processual)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'increase in temperature' is-opposite-of 'decrease in temperature'" } ] }, "type" : "PROPERTY", - "lbl" : "regulates" + "lbl" : "is opposite of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000402", + "id" : "http://purl.obolibrary.org/obo/CL_0000000", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/cl.owl" + } ] + }, "type" : "CLASS", - "lbl" : "branched" + "lbl" : "cell" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002212", + "id" : "http://purl.obolibrary.org/obo/PATO_0000001", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "quality (PATO)" + } ] + }, + "type" : "CLASS", + "lbl" : "quality" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016740", + "type" : "CLASS", + "lbl" : "transferase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002608", "meta" : { "definition" : { - "val" : "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", + "val" : "Inverse of 'causal agent in process'", "xrefs" : [ ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "negatively regulates (process to process)" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002211" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "negatively regulates" + "lbl" : "process has causal agent" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002333", + "id" : "http://purl.obolibrary.org/obo/RO_0002609", "meta" : { "definition" : { - "val" : "inverse of enables", + "val" : "A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." } ] }, "type" : "PROPERTY", - "lbl" : "enabled by" + "lbl" : "obsolete related via dependence to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002450", + "id" : "http://purl.obolibrary.org/obo/RO_0002286", "meta" : { "definition" : { - "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.", + "val" : "Inverse of developmentally preceded by", "xrefs" : [ ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "molecularly increases activity of", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "activates" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "PROPERTY", - "lbl" : "activity directly positively regulates activity of" + "lbl" : "developmentally succeeded by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002448", + "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", + "type" : "PROPERTY", + "lbl" : "has_related_synonym" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0003001", "meta" : { "definition" : { - "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.", + "val" : "a produced_by b iff some process that occurs_in b has_output a.", "xrefs" : [ ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "molecularly controls", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "val" : "Melissa Haendel" } ] }, "type" : "PROPERTY", - "lbl" : "activity directly regulates activity of" + "lbl" : "produced by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002327", + "id" : "http://purl.obolibrary.org/obo/RO_0003000", "meta" : { + "definition" : { + "val" : "a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "is executing" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "is catalyzing" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "catalyzes" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "executes" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "a particular instances of akt-2 enables some instance of protein kinase activity" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "val" : "Melissa Haendel" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "PROPERTY", - "lbl" : "enables" + "lbl" : "produces" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002449", + "id" : "http://purl.obolibrary.org/obo/PATO_0000141", + "type" : "CLASS", + "lbl" : "structure" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000412", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "imported from" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000080", "meta" : { "definition" : { - "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.", + "val" : "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence", "xrefs" : [ ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "molecularly decreases activity of", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A quality inheres in its bearer at all times for which the quality exists." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "inhibits" + "val" : "quality_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is quality of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this red color is a quality of this apple" } ] }, "type" : "PROPERTY", - "lbl" : "activity directly negatively regulates activity of" + "lbl" : "quality of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002328", + "id" : "http://purl.obolibrary.org/obo/RO_0002022", "meta" : { - "definition" : { - "val" : "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "This is a grouping relation that collects relations used for the purpose of connecting structure and function" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:24Z" } ] }, "type" : "PROPERTY", - "lbl" : "functionally related to" + "lbl" : "directly regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002329", + "id" : "http://purl.obolibrary.org/obo/RO_0002385", "meta" : { "definition" : { - "val" : "this relation holds between c and p when c is part of some c', and c' is capable of p.", + "val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y", "xrefs" : [ ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "false" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, "type" : "PROPERTY", - "lbl" : "part of structure that is capable of" + "lbl" : "has potential to developmentally contribute to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002604", + "id" : "http://purl.obolibrary.org/obo/RO_0002264", "meta" : { "definition" : { - "val" : "x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x).", + "val" : "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.", "xrefs" : [ ] }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "'anterior end of organism' is-opposite-of 'posterior end of organism'" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "'increase in temperature' is-opposite-of 'decrease in temperature'" + "val" : "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." } ] }, "type" : "PROPERTY", - "lbl" : "is opposite of" + "lbl" : "acts upstream of or within" }, { - "id" : "http://purl.obolibrary.org/obo/CL_0000000", + "id" : "http://purl.obolibrary.org/obo/RO_0002023", "meta" : { + "definition" : { + "val" : "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.", + "xrefs" : [ "GOC:dos" ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/cl.owl" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:38Z" } ] }, - "type" : "CLASS", - "lbl" : "cell" + "type" : "PROPERTY", + "lbl" : "directly negatively regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000050", + "id" : "http://purl.obolibrary.org/obo/RO_0002024", "meta" : { "definition" : { - "val" : "a core relation that holds between a part and its whole", - "xrefs" : [ ] + "val" : "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.", + "xrefs" : [ "GOC:dos" ] }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my brain is part of my body (continuant parthood, two material entities)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "part_of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "is part of" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000004" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000003" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000002" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000020" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this day is part of this year (occurrent parthood)" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000017" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000019" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000031" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:47Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" } ] }, "type" : "PROPERTY", - "lbl" : "part of" + "lbl" : "directly positively regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002323", + "id" : "http://purl.obolibrary.org/obo/RO_0002387", "meta" : { "definition" : { - "val" : "A mereological relationship or a topological relationship", + "val" : "x has the potential to develop into y iff x develops into y or if x is capable of developing into y", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "mereotopologically related to" + "lbl" : "has potential to develop into" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002202", + "id" : "http://purl.obolibrary.org/obo/RO_0002388", "meta" : { "definition" : { - "val" : "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y", + "val" : "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Terry Meehan" - }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to directly develop into" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002025", + "meta" : { + "definition" : { + "val" : "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This is the transitive form of the develops from relation" + "val" : "This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations." }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Melissa Haendel" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-22T14:14:36Z" } ] }, "type" : "PROPERTY", - "lbl" : "develops from" + "lbl" : "has effector activity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002324", + "id" : "http://purl.obolibrary.org/obo/RO_0000086", "meta" : { "definition" : { - "val" : "A relationship that holds between entities participating in some developmental process (GO:0032502)", + "val" : "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this apple has quality this red color" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." } ] }, "type" : "PROPERTY", - "lbl" : "developmentally related to" + "lbl" : "has quality" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002566", + "id" : "http://purl.obolibrary.org/obo/RO_0002263", "meta" : { "definition" : { - "val" : "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b", + "val" : "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "causally influences (material entity to material entity)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." } ] }, "type" : "PROPERTY", - "lbl" : "causally influences" + "lbl" : "acts upstream of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002203", + "id" : "http://purl.obolibrary.org/obo/RO_0002384", "meta" : { "definition" : { - "val" : "inverse of develops from", + "val" : "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Terry Meehan" } ] }, "type" : "PROPERTY", - "lbl" : "develops into" + "lbl" : "has developmental potential involving" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002447", + "id" : "http://purl.obolibrary.org/obo/RO_0002019", "meta" : { + "definition" : { + "val" : "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Axiomatization to GO to be added later" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-07-19T17:30:36Z" } ] }, "type" : "PROPERTY", - "lbl" : "phosphorylates" + "lbl" : "has ligand" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000001", + "id" : "http://purl.obolibrary.org/obo/PATO_0001241", + "type" : "CLASS", + "lbl" : "physical object quality" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002015", "meta" : { + "definition" : { + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "quality (PATO)" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:17Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'." } ] }, - "type" : "CLASS", - "lbl" : "quality" + "type" : "PROPERTY", + "lbl" : "has positive regulatory component activity" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000116", + "id" : "http://purl.obolibrary.org/obo/RO_0002379", "meta" : { + "definition" : { + "val" : "x spatially_coextensive_with y if and inly if x and y have the same location", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A lump of clay and a statue" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation is added for formal completeness. It is unlikely to be used in many practical scenarios" } ] }, "type" : "PROPERTY", - "lbl" : "editor note" + "lbl" : "spatially coextensive with" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000117", + "id" : "http://purl.obolibrary.org/obo/RO_0002258", "meta" : { + "definition" : { + "val" : "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "In general you should not use this relation to make assertions - use one of the more specific relations below this one" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from" } ] }, "type" : "PROPERTY", - "lbl" : "term editor" + "lbl" : "developmentally preceded by" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000114", + "id" : "http://purl.obolibrary.org/obo/RO_0002259", "type" : "PROPERTY", - "lbl" : "has curation status" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016740", - "type" : "CLASS", - "lbl" : "transferase activity" + "lbl" : "defined by inverse" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000115", + "id" : "http://purl.obolibrary.org/obo/RO_0002017", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:44:33Z" } ] }, "type" : "PROPERTY", - "lbl" : "definition" + "lbl" : "has component activity" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000051", + "id" : "http://purl.obolibrary.org/obo/RO_0002018", "meta" : { "definition" : { - "val" : "a core relation that holds between a whole and its part", + "val" : "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my body has part my brain (continuant parthood, two material entities)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "has part" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has_part" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:49:21Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this year has part this day (occurrent parthood)" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" } ] }, "type" : "PROPERTY", - "lbl" : "has part" + "lbl" : "has component process" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000112", + "id" : "http://purl.obolibrary.org/obo/IAO_0000424", + "type" : "PROPERTY", + "lbl" : "expand expression to" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000000", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" } ] }, - "type" : "PROPERTY", - "lbl" : "example of usage" + "type" : "CLASS", + "lbl" : "anatomical entity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002608", + "id" : "http://purl.obolibrary.org/obo/CARO_0000003", "meta" : { - "definition" : { - "val" : "Inverse of 'causal agent in process'", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" } ] }, - "type" : "PROPERTY", - "lbl" : "process has causal agent" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000111", - "type" : "PROPERTY", - "lbl" : "editor preferred term" + "type" : "CLASS", + "lbl" : "connected anatomical structure" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000118", + "id" : "http://purl.obolibrary.org/obo/CARO_0000006", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" } ] }, - "type" : "PROPERTY", - "lbl" : "alternative term" + "type" : "CLASS", + "lbl" : "material anatomical entity" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000119", + "id" : "http://purl.obolibrary.org/obo/RO_0002254", "meta" : { + "definition" : { + "val" : "x has developmental contribution from y iff x has some part z such that z develops from y", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "definition source" + "lbl" : "has developmental contribution from" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002286", + "id" : "http://purl.obolibrary.org/obo/RO_0002255", "meta" : { "definition" : { - "val" : "Inverse of developmentally preceded by", + "val" : "inverse of has developmental contribution from", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" @@ -617,1968 +622,2600 @@ } ] }, "type" : "PROPERTY", - "lbl" : "developmentally succeeded by" + "lbl" : "developmentally contributes to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002563", + "id" : "http://purl.obolibrary.org/obo/RO_0002013", "meta" : { + "definition" : { + "val" : "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:30:46Z" }, { - "pred" : "http://xmlns.com/foaf/0.1/page", - "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" } ] }, "type" : "PROPERTY", - "lbl" : "interaction relation helper property" + "lbl" : "has regulatory component activity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002564", + "id" : "http://purl.obolibrary.org/obo/RO_0002014", "meta" : { + "definition" : { + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:01Z" } ] }, "type" : "PROPERTY", - "lbl" : "molecular interaction relation helper property" + "lbl" : "has negative regulatory component activity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002559", + "id" : "http://purl.obolibrary.org/obo/GO_0044464", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "causally influenced by (material entity to material entity)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" } ] }, - "type" : "PROPERTY", - "lbl" : "causally influenced by" + "type" : "CLASS", + "lbl" : "cell part" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0001900", + "id" : "http://purl.obolibrary.org/obo/RO_0002131", "meta" : { "definition" : { - "val" : "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.", + "val" : "x overlaps y if and only if there exists some z such that x has part z and z part of y", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://xmlns.com/foaf/0.1/page", - "val" : "https://github.com/oborel/obo-relations/wiki/ROAndTime" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" } ] }, "type" : "PROPERTY", - "lbl" : "temporal interpretation" + "lbl" : "overlaps" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0001901", + "id" : "http://purl.obolibrary.org/obo/CARO_0000014", "meta" : { - "definition" : { - "val" : "\n\n## Elucidation\n\nThis is used when the statement/axiom is assumed to hold true 'eternally'\n\n## How to interpret (informal)\n\nFirst the \"atemporal\" FOL is derived from the OWL using the standard\ninterpretation. This axiom is temporalized by embedding the axiom\nwithin a for-all-times quantified sentence. The t argument is added to\nall instantiation predicates and predicates that use this relation.\n\n## Example\n\n Class: nucleus\n SubClassOf: part_of some cell\n\n forall t :\n forall n :\n instance_of(n,Nucleus,t)\n implies\n exists c :\n instance_of(c,Cell,t)\n part_of(n,c,t)\n\n## Notes\n\nThis interpretation is *not* the same as an at-all-times relation\n\n", - "xrefs" : [ ] - } + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "cell part (CARO)" + } ] }, - "type" : "INDIVIDUAL", - "lbl" : "axiom holds for all times" + "type" : "CLASS", + "lbl" : "cell part" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002434", + "id" : "http://purl.obolibrary.org/obo/GO_0016020", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "membrane" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002481", "meta" : { - "definition" : { - "val" : "A relationship that holds between two entities in which the processes executed by the two entities are causally connected.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "in pairwise interaction with", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://xmlns.com/foaf/0.1/page", - "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://purl.obolibrary.org/obo/MI_0914" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Considering relabeling as 'pairwise interacts with'" } ] }, "type" : "PROPERTY", - "lbl" : "interacts with" + "lbl" : "is kinase activity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002314", + "id" : "http://purl.obolibrary.org/obo/RO_0000057", "meta" : { "definition" : { - "val" : "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.", + "val" : "a relation between a process and a continuant, in which the continuant is somehow involved in the process", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this process has participant this input material (or this output material)" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205" + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:has_participant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this blood coagulation has participant this blood clot" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has participant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_participant" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" + "val" : "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this investigation has participant this investigator" } ] }, "type" : "PROPERTY", - "lbl" : "inheres in part of" + "lbl" : "has participant" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002436", + "id" : "http://purl.obolibrary.org/obo/RO_0001025", "meta" : { "definition" : { - "val" : "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.", + "val" : "a relation between two independent continuants, the target and the location, in which the target is entirely within the location", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "located_in" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://purl.obolibrary.org/obo/ECO_0000353" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "molecularly binds with" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://purl.obolibrary.org/obo/MI_0915" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my brain is located in my head" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "binds" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this rat is located in this cage" + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:located_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "located in" } ] }, "type" : "PROPERTY", - "lbl" : "molecularly interacts with" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", - "type" : "PROPERTY", - "lbl" : "has_related_synonym" + "lbl" : "located in" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000125", + "id" : "http://purl.obolibrary.org/obo/RO_0002598", "meta" : { + "definition" : { + "val" : "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "renin -> arteriolar smooth muscle contraction" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, - "type" : "INDIVIDUAL", - "lbl" : "pending final vetting" + "type" : "PROPERTY", + "lbl" : "capable of positively regulating" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000040", + "id" : "http://purl.obolibrary.org/obo/RO_0002479", "meta" : { "definition" : { - "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.", + "val" : "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.", "xrefs" : [ ] - } + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] }, - "type" : "CLASS", - "lbl" : "material entity" + "type" : "PROPERTY", + "lbl" : "has part that occurs in" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002430", + "id" : "http://purl.obolibrary.org/obo/IAO_0000600", + "type" : "PROPERTY", + "lbl" : "elucidation" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002352", "meta" : { "definition" : { - "val" : "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p", + "val" : "inverse of has input", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002428" } ] }, "type" : "PROPERTY", - "lbl" : "involved in negative regulation of" + "lbl" : "input of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002431", + "id" : "http://purl.obolibrary.org/obo/RO_0002473", "meta" : { "definition" : { - "val" : "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p", + "val" : "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "OWL does not allow defining object properties via a Union" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "involved in or reguates" } ] }, "type" : "PROPERTY", - "lbl" : "involved in or involved in regulation of" + "lbl" : "composed primarily of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002432", + "id" : "http://purl.obolibrary.org/obo/RO_0000052", "meta" : { "definition" : { - "val" : "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.", - "xrefs" : [ "GOC:cjm", "GOC:dos" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "enables activity in", + "val" : "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this red color inheres in this apple" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "A protein that enables activity in a cytosol." + "val" : "this fragility inheres in this vase" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A dependent inheres in its bearer at all times for which the dependent exists." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "inheres in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "executes activity in" + "val" : "inheres_in" } ] }, "type" : "PROPERTY", - "lbl" : "is active in" + "lbl" : "inheres in" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002305", + "id" : "http://purl.obolibrary.org/obo/RO_0002595", "meta" : { + "definition" : { + "val" : "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002411" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." }, { - "pred" : "http://purl.org/dc/terms/creator", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "causally upstream of, negative effect" + "lbl" : "causal relation between material entity and a process" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002427", + "id" : "http://purl.obolibrary.org/obo/RO_0002353", "meta" : { "definition" : { - "val" : "inverse of causally upstream of or within", + "val" : "inverse of has output", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, "type" : "PROPERTY", - "lbl" : "causally downstream of or within" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000141", - "type" : "CLASS", - "lbl" : "structure" + "lbl" : "output of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002428", + "id" : "http://purl.obolibrary.org/obo/RO_0002596", "meta" : { "definition" : { - "val" : "c involved in regulation of p if c is involved in some p' and p' regulates some p", + "val" : "Holds between c and p if and only if c is capable of some activity a, and a regulates p.", "xrefs" : [ ] }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "pyrethroid -> growth" + } ] + }, + "type" : "PROPERTY", + "lbl" : "capable of regulating" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002354", + "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "involved in regulation of" + "lbl" : "formed as result of" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0008150", - "type" : "CLASS", - "lbl" : "biological_process" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002429", + "id" : "http://purl.obolibrary.org/obo/RO_0002233", "meta" : { "definition" : { - "val" : "c involved in regulation of p if c is involved in some p' and p' positively regulates some p", + "val" : "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "consumes" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002428" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "PROPERTY", - "lbl" : "involved in positive regulation of" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001199", - "type" : "CLASS", - "lbl" : "linear" + "lbl" : "has input" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002304", + "id" : "http://purl.obolibrary.org/obo/RO_0002234", "meta" : { + "definition" : { + "val" : "p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/terms/creator", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "produces" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002411" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "causally upstream of, positive effect" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", - "type" : "PROPERTY", - "lbl" : "has_obo_format_version" + "lbl" : "has output" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000412", + "id" : "http://purl.obolibrary.org/obo/RO_0002597", "meta" : { + "definition" : { + "val" : "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, "type" : "PROPERTY", - "lbl" : "imported from" + "lbl" : "capable of negatively regulating" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004047", + "id" : "http://purl.obolibrary.org/obo/RO_0000056", "meta" : { + "definition" : { + "val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002418" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this investigator participates in this investigation" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-03-13T23:55:19Z" - } ] - }, - "type" : "PROPERTY", - "lbl" : "causally upstream of or within, positive effect" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002022", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this input material (or this output material) participates in this process" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "participates_in" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-09-17T13:52:24Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this blood clot participates in this blood coagulation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "participates in" } ] }, "type" : "PROPERTY", - "lbl" : "directly regulated by" + "lbl" : "participates in" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002385", + "id" : "http://purl.obolibrary.org/obo/RO_0002350", "meta" : { "definition" : { - "val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y", + "val" : "is member of is a mereological relation between a item and a collection.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "SIO" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "member part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "An organism that is a member of a population of organisms" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is member of" } ] }, "type" : "PROPERTY", - "lbl" : "has potential to developmentally contribute to" + "lbl" : "member of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002264", + "id" : "http://purl.obolibrary.org/obo/RO_0000053", "meta" : { "definition" : { - "val" : "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.", + "val" : "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", "xrefs" : [ ] }, - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "affects", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "bearer of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." + "val" : "this vase is bearer of this fragility" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this apple is bearer of this red color" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "bearer_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is bearer of" } ] }, "type" : "PROPERTY", - "lbl" : "acts upstream of or within" + "lbl" : "bearer of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002023", + "id" : "http://purl.obolibrary.org/obo/RO_0002351", "meta" : { "definition" : { - "val" : "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.", - "xrefs" : [ "GOC:dos" ] + "val" : "has member is a mereological relation between a collection and an item.", + "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "SIO" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-09-17T13:52:38Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] }, "type" : "PROPERTY", - "lbl" : "directly negatively regulated by" + "lbl" : "has member" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004046", + "id" : "http://purl.obolibrary.org/obo/RO_0001018", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-03-13T23:55:05Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Intended meaning:\ndomain: material entity\nrange: spatial region or site (immaterial continuant)\n " }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002418" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "contained_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "contained in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Containment is location not involving parthood, and arises only where some immaterial continuant is involved." } ] }, "type" : "PROPERTY", - "lbl" : "causally upstream of or within, negative effect" + "lbl" : "contained in" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002024", + "id" : "http://purl.obolibrary.org/obo/RO_0001019", "meta" : { - "definition" : { - "val" : "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.", - "xrefs" : [ "GOC:dos" ] - }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-09-17T13:52:47Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "contains" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] }, "type" : "PROPERTY", - "lbl" : "directly positively regulated by" + "lbl" : "contains" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002387", + "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "type" : "PROPERTY", + "lbl" : "shorthand" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0030000", + "type" : "CLASS", + "lbl" : "biological entity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001015", "meta" : { "definition" : { - "val" : "x has the potential to develop into y iff x develops into y or if x is capable of developing into y", + "val" : "a relation between two independent continuants, the location and the target, in which the target is entirely within the location", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this cage is the location of this rat" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "is location of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my head is the location of my brain" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "location_of" } ] }, "type" : "PROPERTY", - "lbl" : "has potential to develop into" + "lbl" : "location of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002388", + "id" : "http://purl.obolibrary.org/obo/RO_0002584", "meta" : { "definition" : { - "val" : "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y", + "val" : "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p", "xrefs" : [ ] }, "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, "type" : "PROPERTY", - "lbl" : "has potential to directly develop into" + "lbl" : "has part structure that is capable of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002025", + "id" : "http://purl.obolibrary.org/obo/RO_0002222", "meta" : { - "definition" : { - "val" : "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.", - "xrefs" : [ "GOC:dos" ] - }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/terms/source", + "val" : "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations." + "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-09-22T14:14:36Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "has effector activity" + "lbl" : "temporally related to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002263", + "id" : "http://purl.obolibrary.org/obo/RO_0002464", "meta" : { - "definition" : { - "val" : "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." } ] }, "type" : "PROPERTY", - "lbl" : "acts upstream of" + "lbl" : "helper property (not for use in curation)" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002384", + "id" : "http://purl.obolibrary.org/obo/RO_0002581", "meta" : { "definition" : { - "val" : "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).", + "val" : "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL", "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - } ] + } }, "type" : "PROPERTY", - "lbl" : "has developmental potential involving" + "lbl" : "is a defining property chain axiom" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002019", + "id" : "http://purl.obolibrary.org/obo/RO_0002582", "meta" : { "definition" : { - "val" : "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.", + "val" : "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.", + "xrefs" : [ ] + } + }, + "type" : "PROPERTY", + "lbl" : "is a defining property chain axiom where second argument is reflexive" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002217", + "meta" : { + "definition" : { + "val" : "x actively participates in y if and only if x participates in y and x realizes some active role", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "agent in" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-07-19T17:30:36Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "has ligand" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001241", - "type" : "CLASS", - "lbl" : "physical object quality" + "lbl" : "actively participates in" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002418", + "id" : "http://purl.obolibrary.org/obo/RO_0002218", "meta" : { "definition" : { - "val" : "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.", + "val" : "x has participant y if and only if x realizes some active role that inheres in y", "xrefs" : [ ] }, - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "affects", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'heart development' has active participant some Shh protein" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" + "val" : "This may be obsoleted and replaced by the original 'has agent' relation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "influences (processual)" + "val" : "has agent" } ] }, "type" : "PROPERTY", - "lbl" : "causally upstream of or within" + "lbl" : "obsolete has active participant" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002015", + "id" : "http://purl.obolibrary.org/obo/RO_0002334", "meta" : { "definition" : { - "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.", + "val" : "inverse of regulates", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-05-24T09:31:17Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "regulated by (processual)" } ] }, "type" : "PROPERTY", - "lbl" : "has positive regulatory component activity" + "lbl" : "regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002411", + "id" : "http://purl.obolibrary.org/obo/RO_0002213", "meta" : { "definition" : { - "val" : "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain", + "val" : "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "positively regulates (process to process)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, "type" : "PROPERTY", - "lbl" : "causally upstream of" + "lbl" : "positively regulates" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002258", + "id" : "http://purl.obolibrary.org/obo/RO_0002335", "meta" : { "definition" : { - "val" : "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p", + "val" : "inverse of negatively regulates", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "false" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "In general you should not use this relation to make assertions - use one of the more specific relations below this one" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from" } ] }, "type" : "PROPERTY", - "lbl" : "developmentally preceded by" + "lbl" : "negatively regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002412", + "id" : "http://purl.obolibrary.org/obo/RO_0002577", "meta" : { "definition" : { - "val" : "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.", + "val" : "A material entity consisting of multiple components that are causally integrated.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002575", - "val" : "http://purl.obolibrary.org/obo/RO_0002411" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.jbiomedsem.com/content/4/1/43" } ] }, - "type" : "PROPERTY", - "lbl" : "immediately causally upstream of" + "type" : "CLASS", + "lbl" : "system" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002017", + "id" : "http://purl.obolibrary.org/obo/GO_0042995", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-05-24T09:44:33Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" } ] }, - "type" : "PROPERTY", - "lbl" : "has component activity" + "type" : "CLASS", + "lbl" : "cell projection" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002018", + "id" : "http://purl.obolibrary.org/obo/RO_0002578", "meta" : { "definition" : { - "val" : "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", + "val" : "Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-05-24T09:49:21Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly regulates (processual)" } ] }, "type" : "PROPERTY", - "lbl" : "has component process" + "lbl" : "directly regulates" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000066", + "id" : "http://purl.obolibrary.org/obo/RO_0002215", "meta" : { "definition" : { - "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "val" : "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. ", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "occurs_in" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "unfolds_in" + "val" : "has function realized in" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", - "val" : "http://purl.obolibrary.org/obo/bfo.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/21208450" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "unfolds in" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20123131" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "occurs in" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "osteoclast SubClassOf 'capable of' some 'bone resorption'" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "RO_0000053 some (RO_0000054 only ?Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" } ] }, "type" : "PROPERTY", - "lbl" : "occurs in" + "lbl" : "capable of" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "id" : "http://purl.obolibrary.org/obo/RO_0002336", "meta" : { "definition" : { - "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "val" : "inverse of positively regulates", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "site of" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", - "val" : "http://purl.obolibrary.org/obo/bfo.owl" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "contains process" + "lbl" : "positively regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000062", + "id" : "http://purl.obolibrary.org/obo/RO_0002216", "meta" : { "definition" : { - "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "val" : "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "is preceded by" - }, { - "pred" : "http://purl.org/dc/elements/1.1/source", - "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "preceded_by" + "val" : "has function in" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "preceded by" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" } ] }, "type" : "PROPERTY", - "lbl" : "preceded by" + "lbl" : "capable of part of" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000063", + "id" : "http://purl.obolibrary.org/obo/CARO_0001010", + "type" : "CLASS", + "lbl" : "organism or virus or viroid" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002331", "meta" : { "definition" : { - "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "val" : "c involved_in p if and only if c enables some process p', and p' is part of p", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "precedes" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Involved_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "enables part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "actively involved in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "precedes" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0003824", - "type" : "CLASS", - "lbl" : "catalytic activity" - }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0000000", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/caro.owl" - } ] - }, - "type" : "CLASS", - "lbl" : "anatomical entity" + "lbl" : "involved in" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0000003", + "id" : "http://purl.obolibrary.org/obo/RO_0002211", "meta" : { + "definition" : { + "val" : "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/caro.owl" - } ] - }, - "type" : "CLASS", - "lbl" : "connected anatomical structure" - }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000019", - "type" : "CLASS", - "lbl" : "quality" - }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0000006", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/caro.owl" - } ] - }, - "type" : "CLASS", - "lbl" : "material anatomical entity" - }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000015", - "meta" : { - "definition" : { - "val" : "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.", - "xrefs" : [ ] - } - }, - "type" : "CLASS", - "lbl" : "process" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002090", - "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Hill" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002575", - "val" : "http://purl.obolibrary.org/obo/BFO_0000063" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "ends_at_start_of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "meets" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Regulation precludes parthood; the regulatory process may not be within the regulated process." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Tanya Berardini" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GO" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "regulates (processual)" } ] }, "type" : "PROPERTY", - "lbl" : "immediately precedes" + "lbl" : "regulates" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002254", + "id" : "http://purl.obolibrary.org/obo/PATO_0000402", + "type" : "CLASS", + "lbl" : "branched" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002212", "meta" : { "definition" : { - "val" : "x has developmental contribution from y iff x has some part z such that z develops from y", + "val" : "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "negatively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "has developmental contribution from" + "lbl" : "negatively regulates" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004035", + "id" : "http://purl.obolibrary.org/obo/RO_0002575", "meta" : { "definition" : { - "val" : "c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative", + "val" : "relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of,_negative_effect" + "pred" : "http://purl.obolibrary.org/obo/RO_0002423", + "val" : "If we have the annotation P is-direct-form-of Q, and we have inverses P' and Q', then it follows that P' is-direct-form-of Q'" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002263" + "pred" : "http://purl.org/dc/terms/creator", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-01-26T23:53:22Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The general property hierarchy is:\n\n \"directly P\" SubPropertyOf \"P\"\n Transitive(P)\n\nWhere we have an annotation assertion\n\n \"directly P\" \"is direct form of\" \"P\"" } ] }, "type" : "PROPERTY", - "lbl" : "acts upstream of, negative effect" + "lbl" : "is direct form of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002255", + "id" : "http://purl.obolibrary.org/obo/RO_0002333", "meta" : { "definition" : { - "val" : "inverse of has developmental contribution from", + "val" : "inverse of enables", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "PROPERTY", - "lbl" : "developmentally contributes to" + "lbl" : "enabled by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002013", + "id" : "http://purl.obolibrary.org/obo/RO_0040042", "meta" : { "definition" : { - "val" : "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.", + "val" : "R is homemorphic for C iff (1) there exists some x,y such that x R y, and x and y instantiate C and (2) for all x, if x is an instance of C, and there exists some y some such that x R y, then it follows that y is an instance of C.", "xrefs" : [ ] }, "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/issues/164" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "R homeomorphic-for C expands to: C SubClassOf R only C. Additionally, for any class D that is disjoint with C, we can also expand to C DisjointWith R some D, D DisjointWith R some C." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "part-of is homeomorphic for independent continuants." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-05-24T09:30:46Z" + "val" : "2018-10-21T19:46:34Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "val" : "cjm" } ] }, "type" : "PROPERTY", - "lbl" : "has regulatory component activity" + "lbl" : "is homeomorphic for" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002014", + "id" : "http://purl.obolibrary.org/obo/RO_0002450", "meta" : { "definition" : { - "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.", + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.", "xrefs" : [ ] }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly increases activity of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-05-24T09:31:01Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "activates" } ] }, "type" : "PROPERTY", - "lbl" : "has negative regulatory component activity" + "lbl" : "activity directly positively regulates activity of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002410", + "id" : "http://purl.obolibrary.org/obo/RO_0002448", "meta" : { "definition" : { - "val" : "This relation groups causal relations between material entities and causal relations between processes", + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.", "xrefs" : [ ] }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly controls", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." } ] }, "type" : "PROPERTY", - "lbl" : "causally related to" + "lbl" : "activity directly regulates activity of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004032", + "id" : "http://purl.obolibrary.org/obo/RO_0002327", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within,_positive_effect" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is executing" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002264" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-01-26T23:49:30Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is catalyzing" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "catalyzes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "a particular instances of akt-2 enables some instance of protein kinase activity" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "acts upstream of or within, positive effect" + "lbl" : "enables" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004031", + "id" : "http://purl.obolibrary.org/obo/RO_0002449", "meta" : { "definition" : { - "val" : "Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.", + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.", "xrefs" : [ ] }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly decreases activity of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-01-25T23:20:13Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "inhibits" } ] }, "type" : "PROPERTY", - "lbl" : "enables subfunction" + "lbl" : "activity directly negatively regulates activity of" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0044464", + "id" : "http://purl.obolibrary.org/obo/RO_0002328", "meta" : { + "definition" : { + "val" : "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/go.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This is a grouping relation that collects relations used for the purpose of connecting structure and function" } ] }, - "type" : "CLASS", - "lbl" : "cell part" + "type" : "PROPERTY", + "lbl" : "functionally related to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004034", + "id" : "http://purl.obolibrary.org/obo/RO_0002329", "meta" : { "definition" : { - "val" : "c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive", + "val" : "this relation holds between c and p when c is part of some c', and c' is capable of p.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of,_positive_effect" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002263" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-01-26T23:53:14Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "false" } ] }, "type" : "PROPERTY", - "lbl" : "acts upstream of, positive effect" + "lbl" : "part of structure that is capable of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004033", + "id" : "http://purl.obolibrary.org/obo/BFO_0000050", "meta" : { + "definition" : { + "val" : "a core relation that holds between a part and its whole", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002264" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my brain is part of my body (continuant parthood, two material entities)" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-01-26T23:49:51Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "is part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000004" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000002" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this day is part of this year (occurrent parthood)" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000017" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000019" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000031" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." } ] }, "type" : "PROPERTY", - "lbl" : "acts upstream of or within, negative effect" + "lbl" : "part of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002131", + "id" : "http://purl.obolibrary.org/obo/RO_0002323", "meta" : { "definition" : { - "val" : "x overlaps y if and only if there exists some z such that x has part z and z part of y", + "val" : "A mereological relationship or a topological relationship", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" + }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", - "val" : "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "overlaps" + "lbl" : "mereotopologically related to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002404", + "id" : "http://purl.obolibrary.org/obo/RO_0002202", "meta" : { "definition" : { - "val" : "inverse of upstream of", + "val" : "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y", "xrefs" : [ ] }, "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This is the transitive form of the develops from relation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "PROPERTY", - "lbl" : "causally downstream of" + "lbl" : "develops from" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002405", + "id" : "http://purl.obolibrary.org/obo/RO_0002324", "meta" : { + "definition" : { + "val" : "A relationship that holds between entities participating in some developmental process (GO:0032502)", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" } ] }, "type" : "PROPERTY", - "lbl" : "immediately causally downstream of" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016301", - "type" : "CLASS", - "lbl" : "kinase activity" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", - "type" : "PROPERTY", - "lbl" : "in_subset" + "lbl" : "developmentally related to" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0000014", + "id" : "http://purl.obolibrary.org/obo/RO_0002566", "meta" : { + "definition" : { + "val" : "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/caro.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "cell part (CARO)" + "val" : "causally influences (material entity to material entity)" } ] }, - "type" : "CLASS", - "lbl" : "cell part" + "type" : "PROPERTY", + "lbl" : "causally influences" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000004", + "id" : "http://purl.obolibrary.org/obo/RO_0002203", "meta" : { "definition" : { - "val" : "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.", + "val" : "inverse of develops from", "xrefs" : [ ] - } + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" + } ] }, - "type" : "CLASS", - "lbl" : "independent continuant" + "type" : "PROPERTY", + "lbl" : "develops into" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002481", + "id" : "http://purl.obolibrary.org/obo/RO_0002447", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Axiomatization to GO to be added later" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "is kinase activity" + "lbl" : "phosphorylates" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002086", + "id" : "http://purl.obolibrary.org/obo/RO_0002326", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" + "val" : "Chris Mungall" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to \"ribosome binding\". And all three are part_of an eIF2 complex" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We would like to say\n\nif and only if\n exists c', p'\n c part_of c' and c' capable_of p\n and\n c capable_of p' and p' part_of p\nthen\n c contributes_to p\n\nHowever, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. " + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity." } ] }, "type" : "PROPERTY", - "lbl" : "ends after" + "lbl" : "contributes to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002087", + "id" : "http://purl.obolibrary.org/obo/IAO_0000116", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "starts_at_end_of" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" } ] }, "type" : "PROPERTY", - "lbl" : "immediately preceded by" + "lbl" : "editor note" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000051", - "type" : "CLASS", - "lbl" : "morphology" + "id" : "http://purl.obolibrary.org/obo/IAO_0000117", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "term editor" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000052", - "type" : "CLASS", - "lbl" : "shape" + "id" : "http://purl.obolibrary.org/obo/IAO_0000114", + "type" : "PROPERTY", + "lbl" : "has curation status" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000057", + "id" : "http://purl.obolibrary.org/obo/IAO_0000115", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "definition" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000051", "meta" : { "definition" : { - "val" : "a relation between a process and a continuant, in which the continuant is somehow involved in the process", + "val" : "a core relation that holds between a whole and its part", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this process has participant this input material (or this output material)" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { - "pred" : "http://purl.org/dc/elements/1.1/source", - "val" : "http://www.obofoundry.org/ro/#OBO_REL:has_participant" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this blood coagulation has participant this blood clot" + "val" : "my body has part my brain (continuant parthood, two material entities)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "has participant" + "val" : "has part" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has_participant" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." + "val" : "has_part" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this investigation has participant this investigator" + "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this year has part this day (occurrent parthood)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has part" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000112", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "example of usage" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000111", + "type" : "PROPERTY", + "lbl" : "editor preferred term" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000232", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "curator note" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000118", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "alternative term" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000119", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "definition source" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002563", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "interaction relation helper property" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002564", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecular interaction relation helper property" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002559", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influenced by (material entity to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally influenced by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001900", + "meta" : { + "definition" : { + "val" : "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/ROAndTime" + } ] + }, + "type" : "PROPERTY", + "lbl" : "temporal interpretation" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001901", + "meta" : { + "definition" : { + "val" : "\n\n## Elucidation\n\nThis is used when the statement/axiom is assumed to hold true 'eternally'\n\n## How to interpret (informal)\n\nFirst the \"atemporal\" FOL is derived from the OWL using the standard\ninterpretation. This axiom is temporalized by embedding the axiom\nwithin a for-all-times quantified sentence. The t argument is added to\nall instantiation predicates and predicates that use this relation.\n\n## Example\n\n Class: nucleus\n SubClassOf: part_of some cell\n\n forall t :\n forall n :\n instance_of(n,Nucleus,t)\n implies\n exists c :\n instance_of(c,Cell,t)\n part_of(n,c,t)\n\n## Notes\n\nThis interpretation is *not* the same as an at-all-times relation\n\n", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "axiom holds for all times" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002434", + "meta" : { + "definition" : { + "val" : "A relationship that holds between two entities in which the processes executed by the two entities are causally connected.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "in pairwise interaction with", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0914" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Considering relabeling as 'pairwise interacts with'" + } ] + }, + "type" : "PROPERTY", + "lbl" : "interacts with" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002314", + "meta" : { + "definition" : { + "val" : "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + } ] + }, + "type" : "PROPERTY", + "lbl" : "inheres in part of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002436", + "meta" : { + "definition" : { + "val" : "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/ECO_0000353" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "molecularly binds with" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0915" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "binds" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecularly interacts with" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000125", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "pending final vetting" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000040", + "meta" : { + "definition" : { + "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "material entity" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000122", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "ready for release" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0004050", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-03-14T00:03:24Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is negative form of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002430", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in negative regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002431", + "meta" : { + "definition" : { + "val" : "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "OWL does not allow defining object properties via a Union" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "involved in or reguates" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in or involved in regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002432", + "meta" : { + "definition" : { + "val" : "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.", + "xrefs" : [ "GOC:cjm", "GOC:dos" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "enables activity in", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A protein that enables activity in a cytosol." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes activity in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is active in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002305", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + }, { + "pred" : "http://purl.org/dc/terms/creator", + "val" : "cjm" } ] }, "type" : "PROPERTY", - "lbl" : "has participant" + "lbl" : "causally upstream of, negative effect" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002598", + "id" : "http://purl.obolibrary.org/obo/RO_0002427", "meta" : { "definition" : { - "val" : "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.", + "val" : "inverse of causally upstream of or within", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "renin -> arteriolar smooth muscle contraction" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, "type" : "PROPERTY", - "lbl" : "capable of positively regulating" + "lbl" : "causally downstream of or within" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002479", + "id" : "http://purl.obolibrary.org/obo/RO_0002428", "meta" : { "definition" : { - "val" : "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.", + "val" : "c involved in regulation of p if c is involved in some p' and p' regulates some p", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "has part that occurs in" + "lbl" : "involved in regulation of" }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym", - "type" : "PROPERTY", - "lbl" : "has_broad_synonym" + "id" : "http://purl.obolibrary.org/obo/GO_0008150", + "type" : "CLASS", + "lbl" : "biological_process" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000002", + "id" : "http://purl.obolibrary.org/obo/RO_0002429", "meta" : { "definition" : { - "val" : "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.", + "val" : "c involved in regulation of p if c is involved in some p' and p' positively regulates some p", "xrefs" : [ ] - } + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002428" + } ] }, + "type" : "PROPERTY", + "lbl" : "involved in positive regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001199", "type" : "CLASS", - "lbl" : "continuant" + "lbl" : "linear" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000003", + "id" : "http://purl.obolibrary.org/obo/RO_0002304", "meta" : { - "definition" : { - "val" : "An entity that has temporal parts and that happens, unfolds or develops through time.", - "xrefs" : [ ] - } + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/terms/creator", + "val" : "cjm" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + } ] }, - "type" : "CLASS", - "lbl" : "occurrent" + "type" : "PROPERTY", + "lbl" : "causally upstream of, positive effect" }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym", + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", "type" : "PROPERTY", - "lbl" : "has_exact_synonym" + "lbl" : "has_obo_format_version" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0005634", + "id" : "http://purl.obolibrary.org/obo/RO_0004047", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/go.owl" + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002418" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-03-13T23:55:19Z" } ] }, - "type" : "CLASS", - "lbl" : "nucleus" + "type" : "PROPERTY", + "lbl" : "causally upstream of or within, positive effect" }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref", + "id" : "http://purl.obolibrary.org/obo/RO_0004046", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-03-13T23:55:05Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002418" + } ] + }, "type" : "PROPERTY", - "lbl" : "database_cross_reference" + "lbl" : "causally upstream of or within, negative effect" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002352", + "id" : "http://purl.obolibrary.org/obo/RO_0004049", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-03-14T00:03:16Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is positive form of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002418", "meta" : { "definition" : { - "val" : "inverse of has input", + "val" : "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", "http://purl.obolibrary.org/obo/RO_0002259" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "influences (processual)" } ] }, "type" : "PROPERTY", - "lbl" : "input of" + "lbl" : "causally upstream of or within" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002473", + "id" : "http://purl.obolibrary.org/obo/RO_0002411", "meta" : { "definition" : { - "val" : "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.", + "val" : "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002412", + "meta" : { + "definition" : { + "val" : "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, "type" : "PROPERTY", - "lbl" : "composed primarily of" + "lbl" : "immediately causally upstream of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000052", + "id" : "http://purl.obolibrary.org/obo/BFO_0000066", "meta" : { "definition" : { - "val" : "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence", + "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this red color inheres in this apple" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "occurs_in" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this fragility inheres in this vase" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds_in" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "A dependent inheres in its bearer at all times for which the dependent exists." + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "inheres in" + "val" : "occurs in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "occurs in" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "meta" : { + "definition" : { + "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "site of" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "inheres_in" + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" } ] }, "type" : "PROPERTY", - "lbl" : "inheres in" + "lbl" : "contains process" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002595", + "id" : "http://purl.obolibrary.org/obo/BFO_0000062", "meta" : { "definition" : { - "val" : "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.", + "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is preceded by" + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "preceded_by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "preceded by" } ] }, "type" : "PROPERTY", - "lbl" : "causal relation between material entity and a process" + "lbl" : "preceded by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002596", + "id" : "http://purl.obolibrary.org/obo/BFO_0000063", "meta" : { "definition" : { - "val" : "Holds between c and p if and only if c is capable of some activity a, and a regulates p.", + "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "pyrethroid -> growth" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "precedes" } ] }, "type" : "PROPERTY", - "lbl" : "capable of regulating" + "lbl" : "precedes" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0003824", + "type" : "CLASS", + "lbl" : "catalytic activity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000019", + "type" : "CLASS", + "lbl" : "quality" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002233", + "id" : "http://purl.obolibrary.org/obo/BFO_0000015", "meta" : { "definition" : { - "val" : "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.", + "val" : "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.", "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + } + }, + "type" : "CLASS", + "lbl" : "process" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000428", + "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "consumes" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, - "type" : "PROPERTY", - "lbl" : "has input" + "type" : "INDIVIDUAL", + "lbl" : "requires discussion" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002630", + "id" : "http://purl.obolibrary.org/obo/BFO_0000017", "meta" : { "definition" : { - "val" : "Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2.", + "val" : "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.", "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "directly negatively regulates (process to process)" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002578" - } ] + } }, - "type" : "PROPERTY", - "lbl" : "directly negatively regulates" + "type" : "CLASS", + "lbl" : "realizable entity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002597", + "id" : "http://purl.obolibrary.org/obo/RO_0002090", "meta" : { - "definition" : { - "val" : "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.", - "xrefs" : [ ] - }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/BFO_0000063" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "ends_at_start_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "meets" } ] }, "type" : "PROPERTY", - "lbl" : "capable of negatively regulating" + "lbl" : "immediately precedes" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000056", + "id" : "http://purl.obolibrary.org/obo/RO_0004035", "meta" : { "definition" : { - "val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process", + "val" : "c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this investigator participates in this investigation" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this input material (or this output material) participates in this process" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "participates_in" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of,_negative_effect" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this blood clot participates in this blood coagulation" + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002263" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "participates in" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-26T23:53:22Z" } ] }, "type" : "PROPERTY", - "lbl" : "participates in" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002009", - "type" : "CLASS", - "lbl" : "branchiness" + "lbl" : "acts upstream of, negative effect" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000053", + "id" : "http://purl.obolibrary.org/obo/RO_0002410", "meta" : { "definition" : { - "val" : "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", + "val" : "This relation groups causal relations between material entities and causal relations between processes", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "bearer of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this vase is bearer of this fragility" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this apple is bearer of this red color" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." + "val" : "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "bearer_of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "is bearer of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." } ] }, "type" : "PROPERTY", - "lbl" : "bearer of" + "lbl" : "causally related to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002506", + "id" : "http://purl.obolibrary.org/obo/RO_0004032", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within,_positive_effect" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002264" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-26T23:49:30Z" } ] }, "type" : "PROPERTY", - "lbl" : "causal relation between material entities" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "type" : "PROPERTY", - "lbl" : "shorthand" - }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0030000", - "type" : "CLASS", - "lbl" : "biological entity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002124", - "type" : "CLASS", - "lbl" : "laminar" + "lbl" : "acts upstream of or within, positive effect" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002500", + "id" : "http://purl.obolibrary.org/obo/RO_0004031", "meta" : { "definition" : { - "val" : "A relationship between a material entity and a process where the material entity has some causal role that influences the process", + "val" : "Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-25T23:20:13Z" } ] }, "type" : "PROPERTY", - "lbl" : "causal agent in process" + "lbl" : "enables subfunction" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002501", + "id" : "http://purl.obolibrary.org/obo/RO_0004034", "meta" : { "definition" : { - "val" : "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q.", + "val" : "c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of,_positive_effect" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002263" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-26T23:53:14Z" } ] }, "type" : "PROPERTY", - "lbl" : "causal relation between processes" + "lbl" : "acts upstream of, positive effect" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002502", + "id" : "http://purl.obolibrary.org/obo/RO_0004033", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://purl.obolibrary.org/obo/BFO_0000169" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002264" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-26T23:49:51Z" } ] }, "type" : "PROPERTY", - "lbl" : "depends on" + "lbl" : "acts upstream of or within, negative effect" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002629", + "id" : "http://purl.obolibrary.org/obo/RO_0002404", "meta" : { "definition" : { - "val" : "Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.", + "val" : "inverse of upstream of", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002578" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "directly positively regulates (process to process)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, "type" : "PROPERTY", - "lbl" : "directly positively regulates" + "lbl" : "causally downstream of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002180", + "id" : "http://purl.obolibrary.org/obo/RO_0002405", "meta" : { - "definition" : { - "val" : "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://ontologydesignpatterns.org/wiki/Submissions:Componency" + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, "type" : "PROPERTY", - "lbl" : "has component" + "lbl" : "immediately causally downstream of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002584", + "id" : "http://purl.obolibrary.org/obo/GO_0016301", + "type" : "CLASS", + "lbl" : "kinase activity" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", + "type" : "PROPERTY", + "lbl" : "in_subset" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000004", "meta" : { "definition" : { - "val" : "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p", + "val" : "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.", "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - } ] + } }, - "type" : "PROPERTY", - "lbl" : "has part structure that is capable of" + "type" : "CLASS", + "lbl" : "independent continuant" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002222", + "id" : "http://purl.obolibrary.org/obo/BFO_0000006", + "type" : "CLASS", + "lbl" : "spatial region" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002086", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/terms/source", - "val" : "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "val" : "X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)" } ] }, "type" : "PROPERTY", - "lbl" : "temporally related to" + "lbl" : "ends after" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002464", + "id" : "http://purl.obolibrary.org/obo/RO_0002087", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "starts_at_end_of" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" } ] }, "type" : "PROPERTY", - "lbl" : "helper property (not for use in curation)" + "lbl" : "immediately preceded by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002581", + "id" : "http://purl.obolibrary.org/obo/PATO_0000051", + "type" : "CLASS", + "lbl" : "morphology" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000052", + "type" : "CLASS", + "lbl" : "shape" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym", + "type" : "PROPERTY", + "lbl" : "has_broad_synonym" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000002", "meta" : { "definition" : { - "val" : "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL", + "val" : "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.", "xrefs" : [ ] } }, - "type" : "PROPERTY", - "lbl" : "is a defining property chain axiom" + "type" : "CLASS", + "lbl" : "continuant" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002582", + "id" : "http://purl.obolibrary.org/obo/BFO_0000003", "meta" : { "definition" : { - "val" : "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.", + "val" : "An entity that has temporal parts and that happens, unfolds or develops through time.", "xrefs" : [ ] } }, + "type" : "CLASS", + "lbl" : "occurrent" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym", "type" : "PROPERTY", - "lbl" : "is a defining property chain axiom where second argument is reflexive" + "lbl" : "has_exact_synonym" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002217", + "id" : "http://purl.obolibrary.org/obo/GO_0005634", "meta" : { - "definition" : { - "val" : "x actively participates in y if and only if x participates in y and x realizes some active role", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "agent in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" } ] }, + "type" : "CLASS", + "lbl" : "nucleus" + }, { + "id" : "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", "type" : "PROPERTY", - "lbl" : "actively participates in" + "lbl" : "eco subset" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002218", + "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref", + "type" : "PROPERTY", + "lbl" : "database_cross_reference" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002630", "meta" : { "definition" : { - "val" : "x has participant y if and only if x realizes some active role that inheres in y", + "val" : "Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "'heart development' has active participant some Shh protein" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "This may be obsoleted and replaced by the original 'has agent' relation" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly negatively regulates (process to process)" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has agent" + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002578" } ] }, "type" : "PROPERTY", - "lbl" : "obsolete has active participant" + "lbl" : "directly negatively regulates" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002334", + "id" : "http://purl.obolibrary.org/obo/PATO_0002009", + "type" : "CLASS", + "lbl" : "branchiness" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002506", "meta" : { - "definition" : { - "val" : "inverse of regulates", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "regulated by (processual)" } ] }, "type" : "PROPERTY", - "lbl" : "regulated by" + "lbl" : "causal relation between material entities" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002213", + "id" : "http://purl.obolibrary.org/obo/PATO_0002124", + "type" : "CLASS", + "lbl" : "laminar" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002500", "meta" : { "definition" : { - "val" : "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", + "val" : "A relationship between a material entity and a process where the material entity has some causal role that influences the process", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002211" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "positively regulates (process to process)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, "type" : "PROPERTY", - "lbl" : "positively regulates" + "lbl" : "causal agent in process" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002335", + "id" : "http://purl.obolibrary.org/obo/RO_0002501", "meta" : { "definition" : { - "val" : "inverse of negatively regulates", + "val" : "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." } ] }, "type" : "PROPERTY", - "lbl" : "negatively regulated by" + "lbl" : "causal relation between processes" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0042995", + "id" : "http://purl.obolibrary.org/obo/RO_0002502", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/go.owl" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/BFO_0000169" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, + "type" : "PROPERTY", + "lbl" : "depends on" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_01000254", "type" : "CLASS", - "lbl" : "cell projection" + "lbl" : "environmental system" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002578", + "id" : "http://purl.obolibrary.org/obo/RO_0002507", "meta" : { "definition" : { - "val" : "Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.", + "val" : "s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s.", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/24330602" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "determined by (system to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A coral reef environment is determined by a particular coral reef" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002575", - "val" : "http://purl.obolibrary.org/obo/RO_0002211" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://purl.org/dc/terms/creator", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "directly regulates (processual)" + "pred" : "http://purl.org/dc/terms/creator", + "val" : "Pier Buttigieg" } ] }, "type" : "PROPERTY", - "lbl" : "directly regulates" + "lbl" : "determined by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002215", + "id" : "http://purl.obolibrary.org/obo/RO_0002629", "meta" : { "definition" : { - "val" : "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. ", + "val" : "Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has function realized in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://www.ncbi.nlm.nih.gov/pubmed/21208450" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20123131" + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "osteoclast SubClassOf 'capable of' some 'bone resorption'" + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002578" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", - "val" : "RO_0000053 some (RO_0000054 only ?Y)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly positively regulates (process to process)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly positively regulates" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002508", + "meta" : { + "definition" : { + "val" : "inverse of determined by", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259", "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "determines (material entity to system)" } ] }, "type" : "PROPERTY", - "lbl" : "capable of" + "lbl" : "determines" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002336", + "id" : "http://purl.obolibrary.org/obo/RO_0002509", "meta" : { "definition" : { - "val" : "inverse of positively regulates", + "val" : "s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "positively regulated by" + "lbl" : "determined by part of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002216", + "id" : "http://purl.obolibrary.org/obo/BFO_0000031", "meta" : { "definition" : { - "val" : "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.", + "val" : "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "generically dependent continuant" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002180", + "meta" : { + "definition" : { + "val" : "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", - "val" : "RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has function in" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:Componency" } ] }, "type" : "PROPERTY", - "lbl" : "capable of part of" + "lbl" : "has component" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0001010", + "id" : "http://purl.obolibrary.org/obo/GO_0050896", "type" : "CLASS", - "lbl" : "organism or virus or viroid" + "lbl" : "response to stimulus" }, { "id" : "http://purl.obolibrary.org/obo/IAO_0000589", "meta" : { @@ -2607,8 +3244,20 @@ }, "type" : "CLASS", "lbl" : "specifically dependent continuant" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000141", + "type" : "CLASS", + "lbl" : "immaterial entity" } ], "edges" : [ { + "sub" : "http://purl.obolibrary.org/obo/GO_0016020", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CARO_0000014" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002509", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002506" + }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002202", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002203" @@ -2644,10 +3293,18 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0042995", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0044464" + }, { + "sub" : "http://purl.obolibrary.org/obo/ENVO_01000254", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/RO_0002577" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002131", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002323" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002353", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000066", "pred" : "inverseOf", @@ -2656,10 +3313,18 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002501", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002410" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002507", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002509" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002264" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002297", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002234" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002578", "pred" : "subPropertyOf", @@ -2688,14 +3353,18 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0000056", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000057" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002630", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002212" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002331", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002217" }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002630", + "sub" : "http://purl.obolibrary.org/obo/RO_0002509", "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002212" + "obj" : "http://purl.obolibrary.org/obo/RO_0002131" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002427", "pred" : "subPropertyOf", @@ -2741,13 +3410,17 @@ "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002436" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000040", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000006", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002211", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002411" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000040", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002087", "pred" : "inverseOf", @@ -2804,6 +3477,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004035", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002263" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002353", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000056" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002584", "pred" : "subPropertyOf", @@ -2812,6 +3489,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002216", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002500" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000141", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002254", "pred" : "inverseOf", @@ -2820,18 +3501,34 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0000052", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000053" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002507", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002418", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002427" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002234", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002212", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002350", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002351" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002473", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0050896", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004047", "pred" : "subPropertyOf", @@ -2844,10 +3541,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002216", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002024", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002022" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", "pred" : "subPropertyOf", @@ -2856,6 +3549,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002014", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002013" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002024", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002022" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002387", "pred" : "subPropertyOf", @@ -2868,14 +3565,14 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002131" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002304", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0004047" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002304", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0004047" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002335", "pred" : "subPropertyOf", @@ -2884,14 +3581,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002405", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002412" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002629", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002213" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002255", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002286" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002629", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002213" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0003824", "pred" : "is_a", @@ -2924,6 +3621,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002430", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002428" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002379", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002131" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002305", "pred" : "subPropertyOf", @@ -2936,6 +3637,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002327", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002215" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0000080", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000086" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002351", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002559", "pred" : "inverseOf", @@ -2952,6 +3661,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002203", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002387" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002295", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002324" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002264", "pred" : "subPropertyOf", @@ -3020,6 +3733,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002432", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002131" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002577", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000040" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002429", "pred" : "subPropertyOf", @@ -3028,6 +3745,10 @@ "sub" : "http://purl.obolibrary.org/obo/CARO_0000003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/CARO_0000006" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002507", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002508" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002211", "pred" : "inverseOf", @@ -3044,6 +3765,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002023", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002630" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0001015", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0001025" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0030000", "pred" : "is_a", @@ -3060,6 +3785,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002022", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002334" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0003000", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0003001" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002448", "pred" : "subPropertyOf", @@ -3080,6 +3813,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002630", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002578" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002234", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002353" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002598", "pred" : "subPropertyOf", @@ -3100,14 +3837,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002254", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002258" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0016772", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0016740" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002352", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000056" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0016772", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0016740" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000051", "pred" : "is_a", @@ -3152,10 +3889,22 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002090", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000063" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002297", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002295" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002023", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002022" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002354", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002353" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002258", "pred" : "inverseOf", @@ -3172,18 +3921,22 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002608", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002410" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002432", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002017", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002018" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002432", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002388", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002387" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002326", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002329" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002215", "pred" : "subPropertyOf", @@ -3192,6 +3945,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002255", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002385" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002297", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002354" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0000006", "pred" : "is_a", @@ -3224,6 +3981,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002202", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002258" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0000086", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000053" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002508", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002566" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000051", "pred" : "subPropertyOf", @@ -3232,6 +3997,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002500", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002608" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002326", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002216" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002336", "pred" : "subPropertyOf", @@ -3260,6 +4029,10 @@ "sub" : "http://purl.obolibrary.org/obo/CARO_0000006", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/CARO_0000000" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002350", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002596", "pred" : "subPropertyOf", @@ -3280,6 +4053,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002019", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002233" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0001018", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0001019" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0000080", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002217", "pred" : "subPropertyOf", @@ -3292,6 +4073,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002481", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002564" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002507", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002559" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002428", "pred" : "subPropertyOf", @@ -3322,7 +4107,7 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ ], - "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29/imports/ro_import.owl" + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-31/imports/ro_import.owl" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ ], @@ -3334,6 +4119,10 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002595", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0003001", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", "domainClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ], @@ -3346,27 +4135,32 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002211", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002222", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0000056", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002384", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ] + "predicateId" : "http://purl.obolibrary.org/obo/RO_0003000", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002295", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000003" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0000053", "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000020" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002019", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/GO_0004872" ] + "predicateId" : "http://purl.obolibrary.org/obo/RO_0001018", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000050", "allValuesFromEdges" : [ { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" @@ -3374,6 +4168,10 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -3383,24 +4181,54 @@ "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000031" } ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002506", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002501", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002507", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/RO_0002577" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002509", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/RO_0002577" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002222", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0000086", + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000019" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002384", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002019", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/GO_0004872" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002334", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", + "predicateId" : "http://purl.obolibrary.org/obo/RO_0001025", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] }, { @@ -3419,10 +4247,6 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002479", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002501", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002018", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], @@ -3443,12 +4267,12 @@ "propertyChainAxioms" : [ { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000050" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002329", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002215" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000066", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002329", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002215" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0004035", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002305" ] @@ -3566,6 +4390,12 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002450", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002629", "http://purl.obolibrary.org/obo/RO_0002333" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0001018", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0001025", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002509", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002507", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002314", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002314", "http://purl.obolibrary.org/obo/BFO_0000050" ] diff --git a/imports/ro_import.obo b/imports/ro_import.obo index 5fc7cd09..92d7fbe3 100644 --- a/imports/ro_import.obo +++ b/imports/ro_import.obo @@ -1,9 +1,9 @@ format-version: 1.2 -data-version: pato/releases/2019-10-29/imports/ro_import.owl +data-version: pato/releases/2019-10-31/imports/ro_import.owl subsetdef: ro-eco "" subsetdef: RO:0002259 "" ontology: pato/imports/ro_import -owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(AnnotationProperty())\n\n\n\n############################\n# Classes\n############################\n\n# Class: (continuant)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (occurrent)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (kinase activity)\n\nSubClassOf( ObjectHasSelf())\n\n\nSubClassOf(ObjectSomeValuesFrom( ) ObjectUnionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))))\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z\"^^xsd:string) Annotation(rdfs:label \"infer input from direct reg\"^^xsd:string) Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z),\ne.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'\") Annotation(rdfs:label \"enabling an MF enables its parts\") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'\"^^xsd:string) Annotation(rdfs:label \"involved in BP\"^^xsd:string) Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From ligand activity to has_ligand\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to \\\"... -> overlaps\\\"\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.\") Annotation(rdfs:label \"inferring direct reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct neg reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct positive reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From has_ligand to ligand activity\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"effector input is compound function input\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"Input of effector is input of its parent MF\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly regulates X, its parent MF directly regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly positively regulates X, its parent MF directly positively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"if effector directly negatively regulates X, its parent MF directly negatively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nAnnotationAssertion(rdfs:comment \"\")\n) +owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(AnnotationProperty())\n\n############################\n# Object Properties\n############################\n\n# Object Property: (located in)\n\nObjectPropertyRange( ObjectIntersectionOf( ObjectComplementOf()))\n\n# Object Property: (has member)\n\nIrreflexiveObjectProperty()\n\n\n\n############################\n# Classes\n############################\n\n# Class: (continuant)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (occurrent)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (material entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (immaterial entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (kinase activity)\n\nSubClassOf( ObjectHasSelf())\n\n\nSubClassOf(ObjectSomeValuesFrom( ) ObjectUnionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))))\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf() ) )\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z\"^^xsd:string) Annotation(rdfs:label \"infer input from direct reg\"^^xsd:string) Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z),\ne.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'\") Annotation(rdfs:label \"enabling an MF enables its parts\") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'\"^^xsd:string) Annotation(rdfs:label \"involved in BP\"^^xsd:string) Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From ligand activity to has_ligand\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to \\\"... -> overlaps\\\"\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.\") Annotation(rdfs:label \"inferring direct reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct neg reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct positive reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From has_ligand to ligand activity\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"effector input is compound function input\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"Input of effector is input of its parent MF\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly regulates X, its parent MF directly regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly positively regulates X, its parent MF directly positively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"if effector directly negatively regulates X, its parent MF directly negatively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nAnnotationAssertion(rdfs:comment \"\")\n) [Term] id: BFO:0000002 @@ -24,14 +24,28 @@ name: independent continuant def: "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything." [] is_a: BFO:0000002 ! continuant disjoint_from: BFO:0000020 ! specifically dependent continuant +disjoint_from: BFO:0000031 ! generically dependent continuant relationship: BFO:0000050 BFO:0000004 ! part of independent continuant +[Term] +id: BFO:0000006 +name: spatial region +is_a: BFO:0000141 ! immaterial entity + [Term] id: BFO:0000015 name: process def: "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." [] is_a: BFO:0000003 ! occurrent +[Term] +id: BFO:0000017 +name: realizable entity +def: "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances." [] +is_a: BFO:0000020 ! specifically dependent continuant +disjoint_from: BFO:0000019 ! quality +relationship: BFO:0000050 BFO:0000017 ! part of realizable entity + [Term] id: BFO:0000019 name: quality @@ -43,13 +57,27 @@ id: BFO:0000020 name: specifically dependent continuant def: "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same." [] is_a: BFO:0000002 ! continuant +disjoint_from: BFO:0000031 ! generically dependent continuant relationship: BFO:0000050 BFO:0000020 ! part of specifically dependent continuant +[Term] +id: BFO:0000031 +name: generically dependent continuant +def: "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time." [] +is_a: BFO:0000002 ! continuant +relationship: BFO:0000050 BFO:0000031 ! part of generically dependent continuant + [Term] id: BFO:0000040 name: material entity def: "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time." [] is_a: BFO:0000004 ! independent continuant +disjoint_from: BFO:0000141 ! immaterial entity + +[Term] +id: BFO:0000141 +name: immaterial entity +is_a: BFO:0000004 ! independent continuant [Term] id: CARO:0000000 @@ -93,6 +121,11 @@ name: cell is_a: CARO:0000003 ! connected anatomical structure property_value: IAO:0000412 http://purl.obolibrary.org/obo/cl.owl +[Term] +id: ENVO:01000254 +name: environmental system +is_a: RO:0002577 ! system + [Term] id: GO:0003674 name: molecular_function @@ -115,6 +148,12 @@ id: GO:0008150 name: biological_process is_a: BFO:0000015 ! process +[Term] +id: GO:0016020 +name: membrane +is_a: CARO:0000014 ! cell part +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl + [Term] id: GO:0016301 name: kinase activity @@ -142,6 +181,11 @@ name: cell part is_a: CARO:0000014 ! cell part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl +[Term] +id: GO:0050896 +name: response to stimulus +is_a: GO:0008150 ! biological_process + [Term] id: PATO:0000001 name: quality @@ -189,6 +233,15 @@ id: PATO:0002124 name: laminar is_a: PATO:0000141 ! structure +[Term] +id: RO:0002577 +name: system +def: "A material entity consisting of multiple components that are causally integrated." [] +is_a: BFO:0000040 ! material entity +property_value: IAO:0000116 "May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.jbiomedsem.com/content/4/1/43 xsd:string + [Typedef] id: BFO:0000050 name: part of @@ -339,6 +392,78 @@ domain: BFO:0000003 ! occurrent range: BFO:0000002 ! continuant holds_over_chain: BFO:0000051 RO:0000057 +[Typedef] +id: RO:0000080 +name: quality of +def: "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence" [] +property_value: IAO:0000112 "this red color is a quality of this apple" xsd:string +property_value: IAO:0000116 "A quality inheres in its bearer at all times for which the quality exists." xsd:string +property_value: IAO:0000118 "is quality of" xsd:string +property_value: IAO:0000118 "quality_of" xsd:string +is_a: RO:0000052 ! inheres in +inverse_of: RO:0000086 ! has quality + +[Typedef] +id: RO:0000086 +name: has quality +def: "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence" [] +property_value: IAO:0000112 "this apple has quality this red color" xsd:string +property_value: IAO:0000116 "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." xsd:string +property_value: IAO:0000118 "has_quality" xsd:string +range: BFO:0000019 ! quality +is_a: RO:0000053 ! bearer of + +[Typedef] +id: RO:0001015 +name: location of +def: "a relation between two independent continuants, the location and the target, in which the target is entirely within the location" [] +property_value: IAO:0000111 "is location of" xsd:string +property_value: IAO:0000112 "my head is the location of my brain" xsd:string +property_value: IAO:0000112 "this cage is the location of this rat" xsd:string +property_value: IAO:0000116 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000118 "location_of" xsd:string +property_value: RO:0001900 RO:0001901 +is_transitive: true +inverse_of: RO:0001025 ! located in + +[Typedef] +id: RO:0001018 +name: contained in +subset: ro-eco +property_value: IAO:0000111 "contained in" xsd:string +property_value: IAO:0000116 "Containment is location not involving parthood, and arises only where some immaterial continuant is involved." xsd:string +property_value: IAO:0000116 "Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):" xsd:string +property_value: IAO:0000116 "Intended meaning:\ndomain: material entity\nrange: spatial region or site (immaterial continuant)\n " xsd:string +property_value: IAO:0000118 "contained_in" xsd:string +property_value: RO:0001900 RO:0001901 +domain: BFO:0000040 ! material entity +range: BFO:0000004 ! independent continuant +holds_over_chain: RO:0001025 BFO:0000050 +inverse_of: RO:0001019 ! contains + +[Typedef] +id: RO:0001019 +name: contains +subset: ro-eco +property_value: IAO:0000111 "contains" xsd:string +property_value: RO:0001900 RO:0001901 + +[Typedef] +id: RO:0001025 +name: located in +def: "a relation between two independent continuants, the target and the location, in which the target is entirely within the location" [] +property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:located_in xsd:string +property_value: IAO:0000111 "located in" xsd:string +property_value: IAO:0000112 "my brain is located in my head" xsd:string +property_value: IAO:0000112 "this rat is located in this cage" xsd:string +property_value: IAO:0000116 "Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus" xsd:string +property_value: IAO:0000116 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000118 "located_in" xsd:string +property_value: RO:0001900 RO:0001901 +domain: BFO:0000004 {http://purl.obolibrary.org/obo/IAO_0000116="This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation."} ! independent continuant +range: BFO:0000004 {http://purl.obolibrary.org/obo/IAO_0000116="This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation."} ! independent continuant +is_transitive: true + [Typedef] id: RO:0002013 name: has regulatory component activity @@ -642,6 +767,17 @@ range: BFO:0000040 ! material entity is_a: RO:0000057 ! has participant inverse_of: RO:0002352 ! input of +[Typedef] +id: RO:0002234 +name: has output +def: "p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "produces" xsd:string +is_a: RO:0000057 ! has participant +inverse_of: RO:0002353 ! output of + [Typedef] id: RO:0002254 name: has developmental contribution from @@ -753,6 +889,19 @@ def: "A relationship that holds between entities participating in some developme property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" xsd:string +[Typedef] +id: RO:0002326 +name: contributes to +property_value: IAO:0000112 "ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity." xsd:string +property_value: IAO:0000112 "eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to \"ribosome binding\". And all three are part_of an eIF2 complex" xsd:string +property_value: IAO:0000112 "Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity." xsd:string +property_value: IAO:0000116 "We would like to say\n\nif and only if\n exists c', p'\n c part_of c' and c' capable_of p\n and\n c capable_of p' and p' part_of p\nthen\n c contributes_to p\n\nHowever, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to xsd:string +property_value: IAO:0000232 "In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. " xsd:string +is_a: RO:0002216 ! capable of part of +is_a: RO:0002329 ! part of structure that is capable of + [Typedef] id: RO:0002327 name: enables @@ -835,6 +984,26 @@ subset: RO:0002259 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: RO:0002334 ! regulated by +[Typedef] +id: RO:0002350 +name: member of +def: "is member of is a mereological relation between a item and a collection." [] +property_value: IAO:0000112 "An organism that is a member of a population of organisms" xsd:string +property_value: IAO:0000118 "is member of" xsd:string +property_value: IAO:0000118 "member part of" xsd:string +property_value: IAO:0000119 "SIO" xsd:string +property_value: RO:0001900 RO:0001901 +is_a: BFO:0000050 ! part of +inverse_of: RO:0002351 ! has member + +[Typedef] +id: RO:0002351 +name: has member +def: "has member is a mereological relation between a collection and an item." [] +property_value: IAO:0000119 "SIO" xsd:string +property_value: RO:0001900 RO:0001901 +is_a: BFO:0000051 ! has part + [Typedef] id: RO:0002352 name: input of @@ -845,6 +1014,31 @@ property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: RO:0000056 ! participates in is_a: RO:0002328 ! functionally related to +[Typedef] +id: RO:0002353 +name: output of +def: "inverse of has output" [] +subset: ro-eco +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0000056 ! participates in +is_a: RO:0002328 ! functionally related to + +[Typedef] +id: RO:0002354 +name: formed as result of +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002353 ! output of + +[Typedef] +id: RO:0002379 +name: spatially coextensive with +def: "x spatially_coextensive_with y if and inly if x and y have the same location" [] +property_value: IAO:0000112 "A lump of clay and a statue" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "This relation is added for formal completeness. It is unlikely to be used in many practical scenarios" xsd:string +is_a: RO:0002131 ! overlaps + [Typedef] id: RO:0002384 name: has developmental potential involving @@ -1136,6 +1330,47 @@ domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_a: RO:0002410 ! causally related to +[Typedef] +id: RO:0002507 +name: determined by +def: "s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s." [] +subset: ro-eco +property_value: http://purl.org/dc/terms/creator "Chris Mungall" xsd:string +property_value: http://purl.org/dc/terms/creator "Pier Buttigieg" xsd:string +property_value: IAO:0000112 "A coral reef environment is determined by a particular coral reef" xsd:string +property_value: IAO:0000116 "The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/24330602 +property_value: IAO:0000589 "determined by (system to material entity)" xsd:string +domain: RO:0002577 ! system +range: BFO:0000040 ! material entity +is_a: BFO:0000050 ! part of +is_a: RO:0002509 ! determined by part of +is_a: RO:0002559 ! causally influenced by +inverse_of: RO:0002508 ! determines + +[Typedef] +id: RO:0002508 +name: determines +def: "inverse of determined by" [] +subset: ro-eco +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000589 "determines (material entity to system)" xsd:string +is_a: RO:0002566 ! causally influences + +[Typedef] +id: RO:0002509 +name: determined by part of +def: "s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w." [] +subset: ro-eco +property_value: IAO:0000117 "Chris Mungall" xsd:string +domain: RO:0002577 ! system +range: BFO:0000040 ! material entity +holds_over_chain: RO:0002507 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} +is_a: RO:0002131 ! overlaps +is_a: RO:0002506 ! causal relation between material entities + [Typedef] id: RO:0002559 name: causally influenced by @@ -1233,6 +1468,13 @@ def: "Inverse of 'causal agent in process'" [] property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations is_a: RO:0002410 ! causally related to +[Typedef] +id: RO:0002609 +name: obsolete related via dependence to +def: "A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes." [] +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +is_obsolete: true + [Typedef] id: RO:0002629 name: directly positively regulates @@ -1253,6 +1495,28 @@ property_value: RO:0004050 RO:0002578 is_a: RO:0002212 ! negatively regulates is_a: RO:0002578 ! directly regulates +[Typedef] +id: RO:0003000 +name: produces +def: "a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix." [] +comment: Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue. +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Melissa Haendel" xsd:string +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity +inverse_of: RO:0003001 ! produced by + +[Typedef] +id: RO:0003001 +name: produced by +def: "a produced_by b iff some process that occurs_in b has_output a." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Melissa Haendel" xsd:string +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity + [Typedef] id: RO:0004031 name: enables subfunction @@ -1321,3 +1585,27 @@ is_a: RO:0002418 ! causally upstream of or within created_by: cjm creation_date: 2018-03-13T23:55:19Z +[Typedef] +id: results_in_developmental_progression_of +name: results in developmental progression of +def: "p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss)." [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: seeAlso Ontology:extensions +domain: GO:0008150 ! biological_process +range: CARO:0000003 ! connected anatomical structure +is_a: RO:0002324 ! developmentally related to + +[Typedef] +id: results_in_formation_of +name: results in formation of +property_value: IAO:0000112 "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists." xsd:string +property_value: IAO:0000112 "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 GOC:mtg_berkeley_2013 xsd:string +is_a: results_in_developmental_progression_of ! results in developmental progression of +is_a: RO:0002234 ! has output +inverse_of: RO:0002354 ! formed as result of + diff --git a/imports/ro_import.owl b/imports/ro_import.owl index 185b8ed3..3c6b5367 100644 --- a/imports/ro_import.owl +++ b/imports/ro_import.owl @@ -16,7 +16,7 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -105,7 +105,10 @@ - + + + curator note + @@ -120,7 +123,9 @@ - + + expand expression to + @@ -135,7 +140,9 @@ - + + elucidation + @@ -152,14 +159,34 @@ + defined by inverse + + + + + + - + + relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y + The general property hierarchy is: + + "directly P" SubPropertyOf "P" + Transitive(P) + +Where we have an annotation assertion + + "directly P" "is direct form of" "P" + If we have the annotation P is-direct-form-of Q, and we have inverses P' and Q', then it follows that P' is-direct-form-of Q' + Chris Mungall + is direct form of + @@ -194,25 +221,42 @@ - + + cjm + 2018-03-14T00:03:16Z + is positive form of + - + + cjm + 2018-03-14T00:03:24Z + is negative form of + - + + part-of is homeomorphic for independent continuants. + R is homemorphic for C iff (1) there exists some x,y such that x R y, and x and y instantiate C and (2) for all x, if x is an instance of C, and there exists some y some such that x R y, then it follows that y is an instance of C. + cjm + 2018-10-21T19:46:34Z + R homeomorphic-for C expands to: C SubClassOf R only C. Additionally, for any class D that is disjoint with C, we can also expand to C DisjointWith R some D, D DisjointWith R some C. + is homeomorphic for + + + eco subset @@ -568,6 +612,140 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + this red color is a quality of this apple + a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence + A quality inheres in its bearer at all times for which the quality exists. + is quality of + quality_of + quality of + + + + + + + + + + this apple has quality this red color + a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence + A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist. + has_quality + has quality + + + + + + + + + + is location of + my head is the location of my brain + this cage is the location of this rat + a relation between two independent continuants, the location and the target, in which the target is entirely within the location + Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + location_of + + location of + + + + + + + + + + + + + + + contained in + Containment is location not involving parthood, and arises only where some immaterial continuant is involved. + Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition): + Intended meaning: +domain: material entity +range: spatial region or site (immaterial continuant) + + contained_in + + + contained in + + + + + + + + contains + + + contains + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + located in + my brain is located in my head + this rat is located in this cage + a relation between two independent continuants, the target and the location, in which the target is entirely within the location + Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus + Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + located_in + + http://www.obofoundry.org/ro/#OBO_REL:located_in + located in + + + + + + This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation. + + + + + + This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation. + + + + @@ -1038,6 +1216,21 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + + p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p. + Chris Mungall + produces + + has output + + + + @@ -1139,6 +1332,40 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + + + p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss). + This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint. + Chris Mungall + results_in_developmental_progression_of + results in developmental progression of + + + + + + + + + + + + an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists. + every "endocardial cushion formation" (GO:0003272) results_in_formation_of some "endocardial cushion" (UBERON:0002062) + + Chris Mungall + GOC:mtg_berkeley_2013 + results_in_formation_of + results in formation of + + + + @@ -1220,6 +1447,33 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity. + Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity. + eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to "ribosome binding". And all three are part_of an eIF2 complex + We would like to say + +if and only if + exists c', p' + c part_of c' and c' capable_of p + and + c capable_of p' and p' part_of p +then + c contributes_to p + +However, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction. + Chris Mungall + http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to + In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. + contributes to + + + + @@ -1358,6 +1612,35 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + An organism that is a member of a population of organisms + is member of is a mereological relation between a item and a collection. + is member of + member part of + SIO + + member of + + + + + + + + + + has member is a mereological relation between a collection and an item. + SIO + + has member + + + + @@ -1372,6 +1655,49 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + inverse of has output + Chris Mungall + + + output of + + + + + + + + + Chris Mungall + formed as result of + + + + + + + + + + + + + + + A lump of clay and a statue + x spatially_coextensive_with y if and inly if x and y have the same location + Chris Mungall + This relation is added for formal completeness. It is unlikely to be used in many practical scenarios + spatially coextensive with + + + + @@ -1862,6 +2188,71 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + + + + + A coral reef environment is determined by a particular coral reef + s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s. + The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future + Chris Mungall + + determined by (system to material entity) + Chris Mungall + Pier Buttigieg + + determined by + + + + + + + + + inverse of determined by + Chris Mungall + determines (material entity to system) + + + determines + + + + + + + + + + + + + + + + s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w. + Chris Mungall + + determined by part of + + + + + + + + + true + + + + @@ -2025,6 +2416,17 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + obsolete related via dependence to + true + + + + @@ -2053,6 +2455,42 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + + + + + + + + + a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix. + Melissa Haendel + + Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue. + produces + + + + + + + + + + + a produced_by b iff some process that occurs_in b has_output a. + Melissa Haendel + + produced by + + + + @@ -2229,12 +2667,22 @@ Each of these 3 primitives can be composed to yield a cross-product of different + A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything. independent continuant + + + + + spatial region + + + + @@ -2245,6 +2693,23 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + + + + + + + A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances. + realizable entity + + + + @@ -2270,22 +2735,61 @@ Each of these 3 primitives can be composed to yield a cross-product of different + A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same. specifically dependent continuant + + + + + + + + + + + A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time. + generically dependent continuant + + + + + + + + + + + An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. material entity + + + + + + + + + + + immaterial entity + + + + @@ -2356,6 +2860,15 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + environmental system + + + + @@ -2400,6 +2913,16 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + membrane + + + + @@ -2459,6 +2982,15 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + response to stimulus + + + + @@ -2542,6 +3074,19 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + A material entity consisting of multiple components that are causally integrated. + May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43 + Chris Mungall + http://www.jbiomedsem.com/content/4/1/43 + system + + + + + + + + ready for release + + + + @@ -2562,6 +3116,15 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + requires discussion + + + + diff --git a/imports/uberon_import.json b/imports/uberon_import.json index d7c8c73f..28ac1563 100644 --- a/imports/uberon_import.json +++ b/imports/uberon_import.json @@ -1,49 +1,57 @@ { "graphs" : [ { "nodes" : [ { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym", + "id" : "http://xmlns.com/foaf/0.1/page", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "foaf-page" + } ] + }, "type" : "PROPERTY", - "lbl" : "has_exact_synonym" + "lbl" : "page" }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref", + "id" : "http://www.geneontology.org/formats/oboInOwl#hasSynonymType", "type" : "PROPERTY", - "lbl" : "database_cross_reference" + "lbl" : "has_synonym_type" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002473", + "id" : "http://purl.obolibrary.org/obo/RO_0002254", "meta" : { - "definition" : { - "val" : "x composed_primarily_of y iff: more than half of the mass of x is made from parts of y", - "xrefs" : [ ] - }, "xrefs" : [ { - "val" : "RO:0002473" + "val" : "RO:0002254" } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_developmental_contribution_from" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "composed_primarily_of" } ] }, "type" : "PROPERTY", - "lbl" : "composed primarily of" + "lbl" : "has developmental contribution from" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002352", + "id" : "http://purl.obolibrary.org/obo/RO_0002255", "meta" : { "xrefs" : [ { - "val" : "RO:0002352" + "val" : "RO:0002255" } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "input_of" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "developmentally_contributes_to" } ] }, "type" : "PROPERTY", - "lbl" : "input of" + "lbl" : "developmentally_contributes_to" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002131", "meta" : { @@ -67,22 +75,6 @@ }, "type" : "PROPERTY", "lbl" : "overlaps" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000053", - "meta" : { - "xrefs" : [ { - "val" : "RO:0000053" - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "bearer_of" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "uberon" - } ] - }, - "type" : "PROPERTY", - "lbl" : "bearer of" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002328", "meta" : { @@ -115,10 +107,6 @@ }, "type" : "PROPERTY", "lbl" : "part of structure that is capable of" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "type" : "PROPERTY", - "lbl" : "shorthand" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000050", "meta" : { @@ -136,17 +124,41 @@ "type" : "PROPERTY", "lbl" : "part of" }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", + "id" : "http://purl.obolibrary.org/obo/RO_0002202", + "meta" : { + "xrefs" : [ { + "val" : "RO:0002202" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "develops_from" + } ] + }, "type" : "PROPERTY", - "lbl" : "in_subset" + "lbl" : "develops_from" }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "id" : "http://purl.obolibrary.org/obo/RO_0002203", + "meta" : { + "xrefs" : [ { + "val" : "RO:0002203" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "develops_into" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, "type" : "PROPERTY", - "lbl" : "has_obo_namespace" + "lbl" : "develops_into" }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", + "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", "type" : "PROPERTY", - "lbl" : "has_obo_format_version" + "lbl" : "in_subset" }, { "id" : "http://purl.obolibrary.org/obo/IAO_0000116", "meta" : { @@ -206,25 +218,24 @@ "type" : "PROPERTY", "lbl" : "example of usage" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002180", + "id" : "http://purl.obolibrary.org/obo/IAO_0000232", "meta" : { "xrefs" : [ { - "val" : "RO:0002180" + "val" : "IAO:0000232" } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "has_component" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "curator_notes" } ] }, "type" : "PROPERTY", - "lbl" : "has component" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0100001", - "type" : "PROPERTY", - "lbl" : "term replaced by" + "lbl" : "curator notes" }, { "id" : "http://www.geneontology.org/formats/oboInOwl#consider", "type" : "PROPERTY", @@ -272,22 +283,6 @@ }, "type" : "PROPERTY", "lbl" : "immediately_preceded_by" - }, { - "id" : "http://purl.org/dc/elements/1.1/creator", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "uberon" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "dc-creator" - } ] - }, - "type" : "PROPERTY", - "lbl" : "creator" }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001062", "meta" : { @@ -340,6 +335,381 @@ }, "type" : "CLASS", "lbl" : "anatomical entity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001025", + "meta" : { + "xrefs" : [ { + "val" : "RO:0001025" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "located_in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "located_in" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", + "type" : "PROPERTY", + "lbl" : "has_related_synonym" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym", + "type" : "PROPERTY", + "lbl" : "has_broad_synonym" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym", + "type" : "PROPERTY", + "lbl" : "has_narrow_synonym" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym", + "type" : "PROPERTY", + "lbl" : "has_exact_synonym" + }, { + "id" : "http://purl.obolibrary.org/obo/uberon/core#upper_level", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "abstract upper-level terms not directly useful for analysis" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref", + "type" : "PROPERTY", + "lbl" : "database_cross_reference" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002473", + "meta" : { + "definition" : { + "val" : "x composed_primarily_of y iff: more than half of the mass of x is made from parts of y", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002473" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "composed_primarily_of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "composed primarily of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002352", + "meta" : { + "xrefs" : [ { + "val" : "RO:0002352" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "input_of" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, + "type" : "PROPERTY", + "lbl" : "input of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002353", + "meta" : { + "xrefs" : [ { + "val" : "RO:0002353" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "output_of" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, + "type" : "PROPERTY", + "lbl" : "output of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0003001", + "meta" : { + "xrefs" : [ { + "val" : "RO:0003001" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "produced_by" + } ] + }, + "type" : "PROPERTY", + "lbl" : "produced_by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002350", + "meta" : { + "xrefs" : [ { + "val" : "RO:0002350" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "member_of" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, + "type" : "PROPERTY", + "lbl" : "member of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0003000", + "meta" : { + "xrefs" : [ { + "val" : "RO:0003000" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "produces" + } ] + }, + "type" : "PROPERTY", + "lbl" : "produces" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002351", + "meta" : { + "xrefs" : [ { + "val" : "RO:0002351" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_member" + }, { + "pred" : 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"http://www.geneontology.org/formats/oboInOwl#shorthand", + "type" : "PROPERTY", + "lbl" : "shorthand" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001015", + "meta" : { + "xrefs" : [ { + "val" : "RO:0001015" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "location_of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "location_of" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "type" : "PROPERTY", + "lbl" : "has_obo_namespace" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", + "type" : "PROPERTY", + "lbl" : "has_obo_format_version" + }, { + "id" : "http://purl.obolibrary.org/obo/UBPROP_0000001", + "meta" : { + "definition" : { + "val" : "An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class.", + "xrefs" : [ "https://orcid.org/0000-0002-6601-2165" ] + }, + "xrefs" : [ { + "val" : "UBPROP:0000001" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This annotation property may be replaced with an annotation property from an external ontology such as IAO" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "external_definition" + } ] + }, + "type" : "PROPERTY", + "lbl" : "external_definition" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002180", + "meta" : { + "xrefs" : [ { + "val" : "RO:0002180" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_component" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has component" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0100001", + "type" : "PROPERTY", + "lbl" : "term replaced by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002385", + "meta" : { + "definition" : { + "val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002385" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_potential_to_developmentally_contribute_to" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to developmentally contribute to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002387", + "meta" : { + "definition" : { + "val" : "x has the potential to develop into y iff x develops into y or if x is capable of developing into y", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002387" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_potential_to_develop_into" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to develop into" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002388", + "meta" : { + "definition" : { + "val" : "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002388" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_potential_to_directly_develop_into" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to directly develop into" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000086", + "meta" : { + "xrefs" : [ { + "val" : "RO:0000086" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has quality" + }, { + "id" : "http://purl.org/dc/elements/1.1/creator", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "dc-creator" + } ] + }, + "type" : "PROPERTY", + "lbl" : "creator" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002258", + "meta" : { + "xrefs" : [ { + "val" : "RO:0002258" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "developmentally_preceded_by" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally preceded by" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002215", "meta" : { @@ -372,6 +742,10 @@ }, "type" : "PROPERTY", "lbl" : "capable of part of" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000424", + "type" : "PROPERTY", + "lbl" : "expand expression to" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000067", "meta" : { @@ -388,14 +762,6 @@ }, "type" : "PROPERTY", "lbl" : "contains process" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", - "type" : "PROPERTY", - "lbl" : "has_related_synonym" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym", - "type" : "PROPERTY", - "lbl" : "has_broad_synonym" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000062", "meta" : { @@ -425,10 +791,6 @@ }, "type" : "PROPERTY", "lbl" : "preceded_by" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym", - "type" : "PROPERTY", - "lbl" : "has_narrow_synonym" }, { "id" : "http://www.geneontology.org/formats/oboInOwl#SubsetProperty", "type" : "PROPERTY", @@ -471,9 +833,17 @@ "lbl" : "precedes" } ], "edges" : [ { + "sub" : "http://purl.obolibrary.org/obo/RO_0002202", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002203" + }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002215", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002350", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002351" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002473", "pred" : "subPropertyOf", @@ -490,6 +860,18 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002216", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002255", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002385" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002353", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0000086", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000053" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002180", "pred" : "subPropertyOf", @@ -498,6 +880,22 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002329", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002350", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002202", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002254" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002351", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002203", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002387" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", "pred" : "inverseOf", @@ -508,7 +906,7 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ ], - "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29/imports/uberon_import.owl" + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-31/imports/uberon_import.owl" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ ], @@ -516,6 +914,18 @@ "propertyChainAxioms" : [ { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002329", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002215" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002202" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002255", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002203", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002202", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002202" ] } ] } ] } \ No newline at end of file diff --git a/imports/uberon_import.obo b/imports/uberon_import.obo index 91b12953..cacf9f17 100644 --- a/imports/uberon_import.obo +++ b/imports/uberon_import.obo @@ -1,6 +1,6 @@ format-version: 1.2 -data-version: pato/releases/2019-10-29/imports/uberon_import.owl -subsetdef: upper_level "" +data-version: pato/releases/2019-10-31/imports/uberon_import.owl +subsetdef: upper_level "abstract upper-level terms not directly useful for analysis" ontology: pato/imports/uberon_import owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(AnnotationProperty())\n\n\nAnnotationAssertion( \"RO:0002473\")\n) @@ -58,12 +58,25 @@ def: "x composed_primarily_of y iff: more than half of the mass of x is made fro xref: RO:0002473 is_a: has_part ! has part +[Typedef] +id: contains +name: contains +namespace: uberon +xref: RO:0001019 + [Typedef] id: contains_process name: contains process namespace: uberon xref: BFO:0000067 +[Typedef] +id: curator_notes +name: curator notes +namespace: uberon +xref: IAO:0000232 +is_metadata_tag: true + [Typedef] id: dc-creator name: creator @@ -78,6 +91,38 @@ namespace: uberon xref: http://purl.org/dc/elements/1.1/source is_metadata_tag: true +[Typedef] +id: developmentally_contributes_to +name: developmentally_contributes_to +namespace: uberon +xref: RO:0002255 +holds_over_chain: develops_into part_of +is_a: has_potential_to_developmentally_contribute_to ! has potential to developmentally contribute to + +[Typedef] +id: developmentally_preceded_by +name: developmentally preceded by +namespace: uberon +xref: RO:0002258 + +[Typedef] +id: develops_from +name: develops_from +namespace: uberon +xref: RO:0002202 +holds_over_chain: part_of develops_from +is_transitive: true +is_a: has_developmental_contribution_from ! has developmental contribution from +inverse_of: develops_into ! develops_into +transitive_over: part_of ! part of + +[Typedef] +id: develops_into +name: develops_into +namespace: uberon +xref: RO:0002203 +is_a: has_potential_to_develop_into ! has potential to develop into + [Typedef] id: editor_note name: editor note @@ -92,6 +137,22 @@ namespace: uberon xref: IAO:0000112 is_metadata_tag: true +[Typedef] +id: external_definition +name: external_definition +namespace: uberon +def: "An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class." [https://orcid.org/0000-0002-6601-2165] +comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO +xref: UBPROP:0000001 +is_metadata_tag: true + +[Typedef] +id: foaf-page +name: page +namespace: uberon +xref: http://xmlns.com/foaf/0.1/page +is_metadata_tag: true + [Typedef] id: functionally_related_to name: functionally related to @@ -105,6 +166,21 @@ namespace: uberon xref: RO:0002180 is_a: has_part ! has part +[Typedef] +id: has_developmental_contribution_from +name: has developmental contribution from +namespace: uberon +xref: RO:0002254 +holds_over_chain: has_part develops_from +is_transitive: true + +[Typedef] +id: has_member +name: has member +namespace: uberon +xref: RO:0002351 +is_a: has_part ! has part + [Typedef] id: has_part name: has part @@ -112,6 +188,34 @@ namespace: uberon xref: BFO:0000051 is_transitive: true +[Typedef] +id: has_potential_to_develop_into +name: has potential to develop into +namespace: uberon +def: "x has the potential to develop into y iff x develops into y or if x is capable of developing into y" [] +xref: RO:0002387 + +[Typedef] +id: has_potential_to_developmentally_contribute_to +name: has potential to developmentally contribute to +namespace: uberon +def: "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y" [] +xref: RO:0002385 + +[Typedef] +id: has_potential_to_directly_develop_into +name: has potential to directly develop into +namespace: uberon +def: "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y" [] +xref: RO:0002388 + +[Typedef] +id: has_quality +name: has quality +namespace: uberon +xref: RO:0000086 +is_a: bearer_of ! bearer of + [Typedef] id: immediately_preceded_by name: immediately_preceded_by @@ -122,8 +226,8 @@ synonym: "is directly preceded by" EXACT [] synonym: "is immediately preceded by" EXACT [SIO:000251] synonym: "starts_at_end_of" EXACT [] xref: RO:0002087 +property_value: external_definition "A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]." xsd:string {source="SIO:000251"} property_value: seeAlso SIO:000251 -property_value: UBPROP:0000001 "A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]." xsd:string {source="SIO:000251"} is_a: preceded_by ! preceded_by [Typedef] @@ -133,6 +237,33 @@ namespace: uberon xref: RO:0002352 is_a: functionally_related_to ! functionally related to +[Typedef] +id: located_in +name: located_in +namespace: uberon +xref: RO:0001025 + +[Typedef] +id: location_of +name: location_of +namespace: uberon +xref: RO:0001015 + +[Typedef] +id: member_of +name: member of +namespace: uberon +xref: RO:0002350 +is_a: part_of ! part of +inverse_of: has_member ! has member + +[Typedef] +id: output_of +name: output of +namespace: uberon +xref: RO:0002353 +is_a: functionally_related_to ! functionally related to + [Typedef] id: overlaps name: overlaps @@ -174,3 +305,15 @@ namespace: uberon xref: BFO:0000063 is_transitive: true +[Typedef] +id: produced_by +name: produced_by +namespace: uberon +xref: RO:0003001 + +[Typedef] +id: produces +name: produces +namespace: uberon +xref: RO:0003000 + diff --git a/imports/uberon_import.owl b/imports/uberon_import.owl index 3276503c..dffe788b 100644 --- a/imports/uberon_import.owl +++ b/imports/uberon_import.owl @@ -8,10 +8,11 @@ xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:core="http://purl.obolibrary.org/obo/uberon/core#" + xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -67,9 +68,24 @@ + + + + IAO:0000232 + uberon + curator_notes + true + curator_notes + curator notes + + + + - + + expand expression to + @@ -83,13 +99,29 @@ - + + An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class. + UBPROP:0000001 + uberon + external_definition + true + external_definition + This annotation property may be replaced with an annotation property from an external ontology such as IAO + external_definition + + + + + An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class. + + + abstract upper-level terms not directly useful for analysis @@ -225,6 +257,14 @@ + + + + has_synonym_type + + + + @@ -289,6 +329,19 @@ + + + + + uberon + foaf-page + true + foaf-page + page + + + + + + + + RO:0000086 + uberon + has_quality + has_quality + has quality + + + + + + + + RO:0001015 + uberon + location_of + location_of + location_of + + + + + + + + RO:0001019 + uberon + contains + contains + contains + + + + + + + + RO:0001025 + uberon + located_in + located_in + located_in + + + + @@ -451,6 +553,42 @@ + + + + + + + + + + + + + + + RO:0002202 + uberon + develops_from + develops_from + develops_from + + + + + + + + + RO:0002203 + uberon + develops_into + develops_into + develops_into + + + + @@ -477,6 +615,52 @@ + + + + + + + + + RO:0002254 + uberon + has_developmental_contribution_from + has_developmental_contribution_from + has developmental contribution from + + + + + + + + + + + + + RO:0002255 + uberon + developmentally_contributes_to + developmentally_contributes_to + developmentally_contributes_to + + + + + + + + RO:0002258 + uberon + developmentally_preceded_by + developmentally_preceded_by + developmentally preceded by + + + + @@ -506,6 +690,33 @@ + + + + + + RO:0002350 + uberon + member_of + member_of + member of + + + + + + + + + RO:0002351 + uberon + has_member + has_member + has member + + + + @@ -519,6 +730,58 @@ + + + + + RO:0002353 + uberon + output_of + output_of + output of + + + + + + + + x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y + RO:0002385 + uberon + has_potential_to_developmentally_contribute_to + has_potential_to_developmentally_contribute_to + has potential to developmentally contribute to + + + + + + + + x has the potential to develop into y iff x develops into y or if x is capable of developing into y + RO:0002387 + uberon + has_potential_to_develop_into + has_potential_to_develop_into + has potential to develop into + + + + + + + + x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y + RO:0002388 + uberon + has_potential_to_directly_develop_into + has_potential_to_directly_develop_into + has potential to directly develop into + + + + @@ -534,6 +797,30 @@ + + + + RO:0003000 + uberon + produces + produces + produces + + + + + + + + RO:0003001 + uberon + produced_by + produced_by + produced_by + + + + + Manually annotated by ChEBI Team @@ -122,6 +123,14 @@ + + + + has_synonym_type + + + + diff --git a/src/ontology/imports/go_import.json b/src/ontology/imports/go_import.json index 804afece..868a747f 100644 --- a/src/ontology/imports/go_import.json +++ b/src/ontology/imports/go_import.json @@ -141,6 +141,15 @@ }, "type" : "CLASS", "lbl" : "molecular_function" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_aspergillus", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Aspergillus GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/GO_0010646", "meta" : { @@ -230,6 +239,15 @@ }, "type" : "CLASS", "lbl" : "positive regulation of cell communication" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_generic", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Generic GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/GO_1902533", "meta" : { @@ -820,6 +838,15 @@ }, "type" : "PROPERTY", "lbl" : "part of" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_metagenomics", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Metagenomics GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/GO_0016740", "meta" : { @@ -1436,6 +1463,25 @@ }, "type" : "CLASS", "lbl" : "positive regulation of cellular metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0010469", + "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] + }, + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "regulation of receptor activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "regulation of signaling receptor activity" }, { "id" : "http://purl.obolibrary.org/obo/GO_0048523", "meta" : { @@ -1785,6 +1831,15 @@ }, "type" : "CLASS", "lbl" : "negative regulation of protein binding" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_plant", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Plant GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "type" : "PROPERTY", @@ -2012,6 +2067,15 @@ }, "type" : "CLASS", "lbl" : "positive regulation of catalytic activity" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_yeast", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Yeast GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/IAO_0100001", "type" : "PROPERTY", @@ -2153,6 +2217,30 @@ }, "type" : "CLASS", "lbl" : "negative regulation of catalytic activity" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0060089", + "meta" : { + "definition" : { + "val" : "A compound molecular function in which an effector function is controlled by one or more regulatory components.", + "xrefs" : [ "GOC:dos", "GOC:pdt" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + } ] + }, + "type" : "CLASS", + "lbl" : "molecular transducer activity" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_mouse", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Mouse GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000066", "meta" : { @@ -2196,6 +2284,28 @@ "id" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", "type" : "PROPERTY", "lbl" : "has_alternative_id" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "FlyBase Drosophila GO ribbon slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasSynonymType", + "type" : "PROPERTY", + "lbl" : "has_synonym_type" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_pombe", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Fission yeast GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/GO_0051716", "meta" : { @@ -2408,6 +2518,15 @@ }, "type" : "CLASS", "lbl" : "negative regulation of phosphorylation" + }, { + "id" : "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Term not to be used for direct manual annotation" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/GO_0032991", "meta" : { @@ -2549,6 +2668,40 @@ }, "type" : "CLASS", "lbl" : "signal transduction" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_agr", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "AGR slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_2000272", + "meta" : { + "definition" : { + "val" : "Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity.", + "xrefs" : [ "GOC:obol" ] + }, + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "negative regulation of receptor activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-12-02T09:28:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "rfoulger" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of signaling receptor activity" }, { "id" : "http://purl.obolibrary.org/obo/GO_0120025", "meta" : { @@ -2569,6 +2722,26 @@ }, "type" : "CLASS", "lbl" : "plasma membrane bounded cell projection" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_2000273", + "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of signaling receptor activity.", + "xrefs" : [ "GOC:obol" ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "rfoulger" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-12-02T09:28:50Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of signaling receptor activity" }, { "id" : "http://purl.obolibrary.org/obo/GO_0043549", "meta" : { @@ -2837,10 +3010,28 @@ "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref", "type" : "PROPERTY", "lbl" : "database_cross_reference" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_chembl", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "ChEMBL protein targets summary" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", "type" : "PROPERTY", "lbl" : "shorthand" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_candida", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Candida GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/GO_0051174", "meta" : { @@ -2860,6 +3051,15 @@ }, "type" : "CLASS", "lbl" : "regulation of phosphorus metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/go#goslim_pir", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "PIR GO slim" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/GO_0023056", "meta" : { @@ -3210,6 +3410,15 @@ }, "type" : "CLASS", "lbl" : "plasma membrane region" + }, { + "id" : "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Term not to be used for direct annotation" + } ] + }, + "type" : "PROPERTY" }, { "id" : "http://purl.obolibrary.org/obo/GO_0023052", "meta" : { @@ -3576,6 +3785,42 @@ }, "type" : "CLASS", "lbl" : "negative regulation of signal transduction" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0038023", + "meta" : { + "definition" : { + "val" : "Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.", + "xrefs" : [ "GOC:bf", "GOC:signaling" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_mouse" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "receptor activity involved in signal transduction", + "xrefs" : [ "GOC:bf" ] + }, { + "pred" : "hasBroadSynonym", + "val" : "receptor activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "rfoulger" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-08-01T02:45:27Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0004872" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0019041" + } ] + }, + "type" : "CLASS", + "lbl" : "signaling receptor activity" }, { "id" : "http://purl.obolibrary.org/obo/GO_0051100", "meta" : { @@ -3613,13 +3858,13 @@ "lbl" : "subset_property" } ], "edges" : [ { - "sub" : "http://purl.obolibrary.org/obo/GO_0048523", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0009987" - }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048522", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", "obj" : "http://purl.obolibrary.org/obo/GO_0009987" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048523", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0110165", "pred" : "is_a", @@ -3632,6 +3877,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0098772", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0065009" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_2000272", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044092" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0010646", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -3660,6 +3909,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0019220", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051174" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0060089", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0003674" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0033673", "pred" : "is_a", @@ -3708,18 +3961,22 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0032991", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005575" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0044237", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051100", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0005488" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0044237", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0035556", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010469", + "pred" : "http://purl.obolibrary.org/obo/RO_0002211", + "obj" : "http://purl.obolibrary.org/obo/GO_0038023" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0042327", "pred" : "is_a", @@ -3740,14 +3997,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_1900122", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0032092" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0010562", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0051174" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0031325", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009893" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010562", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051174" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0035556", "pred" : "http://purl.obolibrary.org/obo/BFO_0000066", @@ -3864,10 +4121,18 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009967", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009966" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010469", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0009966" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048584", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048518" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_2000273", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044093" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048522", "pred" : "is_a", @@ -3884,14 +4149,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0005623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005575" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0048518", - "pred" : "http://purl.obolibrary.org/obo/RO_0002213", - "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048519", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0008150" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048518", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0016020", "pred" : "is_a", @@ -3904,6 +4169,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0065009", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0065007" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_2000272", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010469" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043086", "pred" : "is_a", @@ -4036,6 +4305,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0042327", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0042325" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_2000272", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0038023" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009893", "pred" : "is_a", @@ -4108,6 +4381,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0032091", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043393" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_2000273", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010469" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0042995", "pred" : "is_a", @@ -4168,14 +4445,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051347", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051338" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009968", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009967", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009968", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900122", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -4204,14 +4481,18 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0043085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0044093" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0043085", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0003824" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043086", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0003824" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0043085", - "pred" : "http://purl.obolibrary.org/obo/RO_0002213", - "obj" : "http://purl.obolibrary.org/obo/GO_0003824" + "sub" : "http://purl.obolibrary.org/obo/GO_0010469", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0065009" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051338", "pred" : "is_a", @@ -4408,18 +4689,22 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0043229", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0005622" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0010563", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0006793" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0010562", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", "obj" : "http://purl.obolibrary.org/obo/GO_0006793" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010563", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0006793" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0042325", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0019220" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0016301", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0010647", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -4428,10 +4713,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0010648", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0007154" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0016301", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0071944", "pred" : "is_a", @@ -4468,6 +4749,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0098797", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0005886" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_2000273", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0038023" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048584", "pred" : "is_a", @@ -4512,6 +4797,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0043226", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0110165" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0038023", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0060089" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900121", "pred" : "is_a", @@ -4522,10 +4811,17 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ ], - "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29/imports/go_import.owl" + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-31/imports/go_import.owl" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010469", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0038023" + } ] + }, { "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051100", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { @@ -4540,17 +4836,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0005102" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048522", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048523", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0009987" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048523", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048522", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0009987" } ] }, { @@ -4679,6 +4975,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0044237" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_2000273", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0038023" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/GO_1900120", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], @@ -4764,17 +5067,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0005488" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048519", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048518", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048518", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048519", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" } ] }, { @@ -4785,31 +5088,31 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0009987" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009967", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009968", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009968", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009967", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010647", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010648", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007154" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010648", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010647", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007154" } ] }, { @@ -4848,17 +5151,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043086", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043085", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043085", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043086", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" } ] }, { @@ -4889,6 +5192,13 @@ "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0003674" } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_2000272", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0038023" + } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/GO_0120025", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0042995" ], diff --git a/src/ontology/imports/go_import.obo b/src/ontology/imports/go_import.obo index 1c196452..2e4ba481 100644 --- a/src/ontology/imports/go_import.obo +++ b/src/ontology/imports/go_import.obo @@ -1,19 +1,19 @@ format-version: 1.2 -data-version: pato/releases/2019-10-29/imports/go_import.owl -subsetdef: gocheck_do_not_annotate "" -subsetdef: gocheck_do_not_manually_annotate "" -subsetdef: goslim_agr "" -subsetdef: goslim_aspergillus "" -subsetdef: goslim_candida "" -subsetdef: goslim_chembl "" -subsetdef: goslim_flybase_ribbon "" -subsetdef: goslim_generic "" -subsetdef: goslim_metagenomics "" -subsetdef: goslim_mouse "" -subsetdef: goslim_pir "" -subsetdef: goslim_plant "" -subsetdef: goslim_pombe "" -subsetdef: goslim_yeast "" +data-version: pato/releases/2019-10-31/imports/go_import.owl +subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation" +subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation" +subsetdef: goslim_agr "AGR slim" +subsetdef: goslim_aspergillus "Aspergillus GO slim" +subsetdef: goslim_candida "Candida GO slim" +subsetdef: goslim_chembl "ChEMBL protein targets summary" +subsetdef: goslim_flybase_ribbon "FlyBase Drosophila GO ribbon slim" +subsetdef: goslim_generic "Generic GO slim" +subsetdef: goslim_metagenomics "Metagenomics GO slim" +subsetdef: goslim_mouse "Mouse GO slim" +subsetdef: goslim_pir "PIR GO slim" +subsetdef: goslim_plant "Plant GO slim" +subsetdef: goslim_pombe "Fission yeast GO slim" +subsetdef: goslim_yeast "Yeast GO slim" ontology: pato/imports/go_import [Term] @@ -440,6 +440,18 @@ is_a: GO:0008150 ! biological_process created_by: janelomax creation_date: 2012-12-11T16:56:55Z +[Term] +id: GO:0010469 +name: regulation of signaling receptor activity +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity." [GOC:dph, GOC:tb] +synonym: "regulation of receptor activity" BROAD [] +is_a: GO:0009966 ! regulation of signal transduction +is_a: GO:0065009 ! regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0038023 ! signaling receptor activity +relationship: regulates GO:0038023 ! signaling receptor activity + [Term] id: GO:0010562 name: positive regulation of phosphorus metabolic process @@ -842,7 +854,23 @@ creation_date: 2010-05-14T01:14:37Z [Term] id: GO:0038023 +name: signaling receptor activity +namespace: molecular_function alt_id: GO:0004872 +alt_id: GO:0019041 +def: "Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response." [GOC:bf, GOC:signaling] +subset: goslim_agr +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_metagenomics +subset: goslim_mouse +subset: goslim_pir +subset: goslim_plant +synonym: "receptor activity" BROAD [] +synonym: "receptor activity involved in signal transduction" EXACT [GOC:bf] +is_a: GO:0060089 ! molecular transducer activity +created_by: rfoulger +creation_date: 2011-08-01T02:45:27Z [Term] id: GO:0042325 @@ -1407,6 +1435,15 @@ subset: gocheck_do_not_manually_annotate is_a: GO:0009987 ! cellular process is_a: GO:0050896 ! response to stimulus +[Term] +id: GO:0060089 +name: molecular transducer activity +namespace: molecular_function +def: "A compound molecular function in which an effector function is controlled by one or more regulatory components." [GOC:dos, GOC:pdt] +subset: gocheck_do_not_manually_annotate +subset: goslim_pir +is_a: GO:0003674 ! molecular_function + [Term] id: GO:0065007 name: biological regulation @@ -1673,6 +1710,33 @@ relationship: positively_regulates GO:0035556 ! intracellular signal transductio created_by: bf creation_date: 2013-12-02T11:33:10Z +[Term] +id: GO:2000272 +name: negative regulation of signaling receptor activity +namespace: biological_process +def: "Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity." [GOC:obol] +synonym: "negative regulation of receptor activity" BROAD [] +is_a: GO:0010469 ! regulation of signaling receptor activity +is_a: GO:0044092 ! negative regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0038023 ! signaling receptor activity +relationship: negatively_regulates GO:0038023 ! signaling receptor activity +created_by: rfoulger +creation_date: 2010-12-02T09:28:47Z + +[Term] +id: GO:2000273 +name: positive regulation of signaling receptor activity +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of signaling receptor activity." [GOC:obol] +is_a: GO:0010469 ! regulation of signaling receptor activity +is_a: GO:0044093 ! positive regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0038023 ! signaling receptor activity +relationship: positively_regulates GO:0038023 ! signaling receptor activity +created_by: rfoulger +creation_date: 2010-12-02T09:28:50Z + [Typedef] id: has_part name: has part diff --git a/src/ontology/imports/go_import.owl b/src/ontology/imports/go_import.owl index e81bfa1c..fb951ac4 100644 --- a/src/ontology/imports/go_import.owl +++ b/src/ontology/imports/go_import.owl @@ -11,7 +11,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -58,6 +58,7 @@ + Term not to be used for direct annotation @@ -66,6 +67,7 @@ + Term not to be used for direct manual annotation @@ -74,6 +76,7 @@ + AGR slim @@ -82,6 +85,7 @@ + Aspergillus GO slim @@ -90,6 +94,7 @@ + Candida GO slim @@ -98,6 +103,7 @@ + ChEMBL protein targets summary @@ -106,6 +112,7 @@ + FlyBase Drosophila GO ribbon slim @@ -114,6 +121,7 @@ + Generic GO slim @@ -122,6 +130,7 @@ + Metagenomics GO slim @@ -130,6 +139,7 @@ + Mouse GO slim @@ -138,6 +148,7 @@ + PIR GO slim @@ -146,6 +157,7 @@ + Plant GO slim @@ -154,6 +166,7 @@ + Fission yeast GO slim @@ -162,6 +175,7 @@ + Yeast GO slim @@ -277,6 +291,14 @@ + + + + has_synonym_type + + + + @@ -1317,6 +1339,44 @@ + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity. + regulation of receptor activity + biological_process + GO:0010469 + regulation of signaling receptor activity + + + + + Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity. + GOC:dph + GOC:tb + + + + @@ -2414,6 +2474,44 @@ + + + + + Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. + rfoulger + 2011-08-01T02:45:27Z + GO:0004872 + GO:0019041 + receptor activity + receptor activity involved in signal transduction + molecular_function + GO:0038023 + + + + + + + + signaling receptor activity + + + + + Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. + GOC:bf + GOC:signaling + + + + + receptor activity involved in signal transduction + GOC:bf + + + + @@ -2551,7 +2649,7 @@ A prolongation or process extending from a cell, e.g. a flagellum or axon. GOC:jl - http://www.cogsci.princeton.edu/~wn/ + http://www.cogsci.princeton.edu/~wn/ @@ -3868,6 +3966,27 @@ + + + + + A compound molecular function in which an effector function is controlled by one or more regulatory components. + molecular_function + GO:0060089 + + + molecular transducer activity + + + + + A compound molecular function in which an effector function is controlled by one or more regulatory components. + GOC:dos + GOC:pdt + + + + @@ -4977,6 +5096,83 @@ upregulation of signal transduction via intracellular signaling cascade GOC:TermGenie + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity. + rfoulger + 2010-12-02T09:28:47Z + negative regulation of receptor activity + biological_process + GO:2000272 + negative regulation of signaling receptor activity + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity. + GOC:obol + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of signaling receptor activity. + rfoulger + 2010-12-02T09:28:50Z + biological_process + GO:2000273 + positive regulation of signaling receptor activity + + + + + Any process that activates or increases the frequency, rate or extent of signaling receptor activity. + GOC:obol + diff --git a/src/ontology/imports/pco_import.json b/src/ontology/imports/pco_import.json index fa2b8bde..8a20121f 100644 --- a/src/ontology/imports/pco_import.json +++ b/src/ontology/imports/pco_import.json @@ -345,6 +345,23 @@ }, "type" : "CLASS", "lbl" : "Gnathostomata " + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002286", + "meta" : { + "definition" : { + "val" : "Inverse of developmentally preceded by", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally succeeded by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000014", "meta" : { @@ -725,6 +742,57 @@ }, "type" : "PROPERTY", "lbl" : "acts upstream of or within" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002385", + "meta" : { + "definition" : { + "val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to developmentally contribute to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002387", + "meta" : { + "definition" : { + "val" : "x has the potential to develop into y iff x develops into y or if x is capable of developing into y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to develop into" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002388", + "meta" : { + "definition" : { + "val" : "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to directly develop into" }, { "id" : "http://purl.obolibrary.org/obo/RO_0000086", "meta" : { @@ -745,6 +813,23 @@ }, "type" : "PROPERTY", "lbl" : "has quality" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002384", + "meta" : { + "definition" : { + "val" : "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has developmental potential involving" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002263", "meta" : { @@ -835,6 +920,32 @@ }, "type" : "PROPERTY", "lbl" : "has positive regulatory component activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002258", + "meta" : { + "definition" : { + "val" : "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "In general you should not use this relation to make assertions - use one of the more specific relations below this one" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally preceded by" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002379", "meta" : { @@ -855,6 +966,10 @@ }, "type" : "PROPERTY", "lbl" : "spatially coextensive with" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002259", + "type" : "PROPERTY", + "lbl" : "defined by inverse" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002017", "meta" : { @@ -888,6 +1003,26 @@ }, "type" : "PROPERTY", "lbl" : "has component process" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000424", + "meta" : { + "definition" : { + "val" : "A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "ObjectProperty: RO_0002104\nLabel: has plasma membrane part\nAnnotations: IAO_0000424 \"http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.org/obo/owl/GO#GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)\"\n" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "expand expression to" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "expand expression to" }, { "id" : "http://purl.obolibrary.org/obo/IAO_0000423", "meta" : { @@ -1004,6 +1139,26 @@ }, "type" : "CLASS", "lbl" : "red" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002254", + "meta" : { + "definition" : { + "val" : "x has developmental contribution from y iff x has some part z such that z develops from y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has developmental contribution from" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002013", "meta" : { @@ -1021,6 +1176,24 @@ }, "type" : "PROPERTY", "lbl" : "has regulatory component activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002255", + "meta" : { + "definition" : { + "val" : "inverse of has developmental contribution from", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally contributes to" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002014", "meta" : { @@ -1107,6 +1280,16 @@ }, "type" : "CLASS", "lbl" : "cell part" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016020", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "membrane" }, { "id" : "http://purl.obolibrary.org/obo/ENVO_00002297", "meta" : { @@ -1278,6 +1461,25 @@ }, "type" : "CLASS", "lbl" : "Metazoa" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000600", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "elucidation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "person:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Person:Barry Smith" + } ] + }, + "type" : "PROPERTY", + "lbl" : "elucidation" }, { "id" : "http://purl.obolibrary.org/obo/PCO_0000031", "meta" : { @@ -2422,6 +2624,26 @@ }, "type" : "PROPERTY", "lbl" : "negatively regulates" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002575", + "meta" : { + "definition" : { + "val" : "relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The general property hierarchy is:\n\n \"directly P\" SubPropertyOf \"P\"\n Transitive(P)\n\nWhere we have an annotation assertion\n\n \"directly P\" \"is direct form of\" \"P\"" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002423", + "val" : "If we have the annotation P is-direct-form-of Q, and we have inverses P' and Q', then it follows that P' is-direct-form-of Q'" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is direct form of" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002333", "meta" : { @@ -2615,6 +2837,35 @@ }, "type" : "PROPERTY", "lbl" : "mereotopologically related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002202", + "meta" : { + "definition" : { + "val" : "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This is the transitive form of the develops from relation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "develops from" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002324", "meta" : { @@ -2632,6 +2883,30 @@ }, "type" : "PROPERTY", "lbl" : "developmentally related to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002203", + "meta" : { + "definition" : { + "val" : "inverse of develops from", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" + } ] + }, + "type" : "PROPERTY", + "lbl" : "develops into" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002566", "meta" : { @@ -2918,6 +3193,26 @@ }, "type" : "PROPERTY", "lbl" : "has obsolescence reason" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000232", + "meta" : { + "definition" : { + "val" : "An administrative note of use for a curator but of no use for a user", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "curator note" + } ] + }, + "type" : "PROPERTY", + "lbl" : "curator note" }, { "id" : "http://purl.obolibrary.org/obo/IAO_0000111", "meta" : { @@ -3645,6 +3940,16 @@ }, "type" : "INDIVIDUAL", "lbl" : "requires discussion" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000017", + "meta" : { + "definition" : { + "val" : "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "realizable entity" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002090", "meta" : { @@ -3811,6 +4116,25 @@ "id" : "http://purl.obolibrary.org/obo/BFO_0000006", "type" : "CLASS", "lbl" : "spatial region" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0010000", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Person:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Person:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has axiom id" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has axiom label" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002086", "meta" : { @@ -3941,6 +4265,10 @@ }, "type" : "CLASS", "lbl" : "nucleus" + }, { + "id" : "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", + "type" : "PROPERTY", + "lbl" : "eco subset" }, { "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref", "type" : "PROPERTY", @@ -4213,6 +4541,10 @@ }, "type" : "PROPERTY", "lbl" : "has component" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0050896", + "type" : "CLASS", + "lbl" : "response to stimulus" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000027", "type" : "CLASS", @@ -4437,6 +4769,10 @@ "lbl" : "root" } ], "edges" : [ { + "sub" : "http://purl.obolibrary.org/obo/GO_0016020", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CARO_0000014" + }, { "sub" : "http://purl.obolibrary.org/obo/NCBITaxon_1338369", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_8287" @@ -4456,10 +4792,18 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002509", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002506" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002202", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002203" }, { "sub" : "http://purl.obolibrary.org/obo/IAO_0000421", "pred" : "type", "obj" : "http://purl.obolibrary.org/obo/IAO_0000409" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002384", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002324" }, { "sub" : "http://purl.obolibrary.org/obo/IAO_0000423", "pred" : "type", @@ -4652,6 +4996,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002024", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002022" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002387", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002384" }, { "sub" : "http://purl.obolibrary.org/obo/IAO_0000124", "pred" : "type", @@ -4672,6 +5020,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002335", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002334" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002255", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002286" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0003824", "pred" : "is_a", @@ -4752,6 +5104,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0008150", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/BFO_0000015" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002203", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002286" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000001", "pred" : "is_a", @@ -4836,6 +5192,10 @@ "sub" : "http://purl.obolibrary.org/obo/ENVO_01001055", "pred" : "http://purl.obolibrary.org/obo/RO_0002507", "obj" : "http://purl.obolibrary.org/obo/CARO_0000006" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "sub" : "http://purl.obolibrary.org/obo/CL_0000000", "pred" : "is_a", @@ -4844,18 +5204,22 @@ "sub" : "http://purl.obolibrary.org/obo/PO_0009011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PO_0025131" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002598", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002596" }, { "sub" : "http://purl.obolibrary.org/obo/NCBITaxon_33213", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_6072" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002598", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002596" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002015", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002336" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002254", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002258" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0016772", "pred" : "is_a", @@ -4912,10 +5276,18 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002017", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002018" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002388", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002387" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002215", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002216" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002255", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002385" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002297", "pred" : "inverseOf", @@ -4936,6 +5308,10 @@ "sub" : "http://purl.obolibrary.org/obo/IAO_0000121", "pred" : "type", "obj" : "http://purl.obolibrary.org/obo/IAO_0000078" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002202", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002258" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002508", "pred" : "subPropertyOf", @@ -5004,14 +5380,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0001018", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0001019" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0000080", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001415", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002003" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0000080", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002217", "pred" : "subPropertyOf", @@ -5160,14 +5536,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002333", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002447", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002436" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000027", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/BFO_0000040" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002447", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002436" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000040", "pred" : "is_a", @@ -5188,6 +5564,10 @@ "sub" : "http://purl.obolibrary.org/obo/PCO_0000028", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PCO_0000000" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002286", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002384" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", "pred" : "inverseOf", @@ -5204,6 +5584,10 @@ "sub" : "http://purl.obolibrary.org/obo/NCBITaxon_40674", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_32524" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002254", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002255" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001236", "pred" : "is_a", @@ -5224,6 +5608,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002212", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0050896", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/ENVO_01000313", "pred" : "is_a", @@ -5336,10 +5724,18 @@ "sub" : "http://purl.obolibrary.org/obo/PCO_0000027", "pred" : "http://purl.obolibrary.org/obo/RO_0002351", "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002203", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002388" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002450", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002448" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002203", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002387" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000161", "pred" : "is_a", @@ -5412,6 +5808,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002211", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002334" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0016020", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044464" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002448", "pred" : "subPropertyOf", @@ -5504,6 +5904,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002412", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002090" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002258", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002324" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002385", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002384" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002297", "pred" : "subPropertyOf", @@ -5528,6 +5936,10 @@ "sub" : "http://purl.obolibrary.org/obo/NCBITaxon_314293", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_376913" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002258", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002286" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000402", "pred" : "is_a", @@ -5654,7 +6066,7 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ ], - "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29/imports/pco_import.owl" + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-31/imports/pco_import.owl" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ { @@ -5744,6 +6156,10 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0003001", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000003" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002233", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], @@ -5775,6 +6191,10 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002506", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002501", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], @@ -5813,6 +6233,10 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002434", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002258", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002479", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], @@ -5876,6 +6300,9 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002264", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002418" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002255", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002203", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002596", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002211" ] @@ -5912,6 +6339,9 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002597", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002202" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002449", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002630", "http://purl.obolibrary.org/obo/RO_0002333" ] diff --git a/src/ontology/imports/pco_import.obo b/src/ontology/imports/pco_import.obo index 0c8554e5..4db60253 100644 --- a/src/ontology/imports/pco_import.obo +++ b/src/ontology/imports/pco_import.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: pato/releases/2019-10-29/imports/pco_import.owl +data-version: pato/releases/2019-10-31/imports/pco_import.owl subsetdef: ro-eco "" subsetdef: RO:0002259 "" ontology: pato/imports/pco_import @@ -44,6 +44,13 @@ def: "An occurrent that has temporal proper parts and for some time t, p s-depen def: "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/083-003"} is_a: BFO:0000003 ! occurrent +[Term] +id: BFO:0000017 +name: realizable entity +def: "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances." [] +is_a: BFO:0000020 ! specifically dependent continuant +disjoint_from: BFO:0000019 ! quality + [Term] id: BFO:0000019 name: quality @@ -272,6 +279,13 @@ synonym: "single organism process" RELATED [] synonym: "single-organism process" RELATED [] is_a: BFO:0000015 ! process +[Term] +id: GO:0016020 +name: membrane +is_a: CARO:0000014 ! cell part +is_a: GO:0044464 ! cell part +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl + [Term] id: GO:0016301 name: kinase activity @@ -299,6 +313,11 @@ name: cell part is_a: CARO:0000014 ! cell part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl +[Term] +id: GO:0050896 +name: response to stimulus +is_a: GO:0008150 ! biological_process + [Term] id: IAO:0000027 name: data item @@ -1262,6 +1281,36 @@ property_value: RO:0001900 RO:0001901 property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:Componency is_a: BFO:0000051 ! has part +[Typedef] +id: RO:0002202 +name: develops from +def: "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y" [] +comment: This is the transitive form of the develops from relation +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000117 "Melissa Haendel" xsd:string +property_value: IAO:0000117 "Terry Meehan" xsd:string +domain: BFO:0000004 ! independent continuant +range: BFO:0000004 ! independent continuant +is_transitive: true +is_a: RO:0002258 ! developmentally preceded by +inverse_of: RO:0002203 ! develops into + +[Typedef] +id: RO:0002203 +name: develops into +def: "inverse of develops from" [] +subset: RO:0002259 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000117 "Terry Meehan" xsd:string +is_transitive: true +is_a: RO:0002286 ! developmentally succeeded by +is_a: RO:0002387 ! has potential to develop into +is_a: RO:0002388 ! has potential to directly develop into + [Typedef] id: RO:0002211 name: regulates @@ -1397,6 +1446,44 @@ property_value: IAO:0000118 "produces" xsd:string is_a: RO:0000057 ! has participant inverse_of: RO:0002353 ! output of +[Typedef] +id: RO:0002254 +name: has developmental contribution from +def: "x has developmental contribution from y iff x has some part z such that z develops from y" [] +property_value: IAO:0000112 "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +domain: BFO:0000004 ! independent continuant +range: CARO:0000003 ! anatomical structure +holds_over_chain: BFO:0000051 RO:0002202 +is_a: RO:0002258 ! developmentally preceded by +inverse_of: RO:0002255 ! developmentally contributes to + +[Typedef] +id: RO:0002255 +name: developmentally contributes to +def: "inverse of has developmental contribution from" [] +subset: RO:0002259 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +holds_over_chain: RO:0002203 BFO:0000050 +is_a: RO:0002286 ! developmentally succeeded by +is_a: RO:0002385 ! has potential to developmentally contribute to + +[Typedef] +id: RO:0002258 +name: developmentally preceded by +def: "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p" [] +comment: This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "false" xsd:boolean +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "In general you should not use this relation to make assertions - use one of the more specific relations below this one" xsd:string +domain: BFO:0000002 ! continuant +range: BFO:0000002 ! continuant +is_a: RO:0002324 ! developmentally related to +inverse_of: RO:0002286 ! developmentally succeeded by + [Typedef] id: RO:0002263 name: acts upstream of @@ -1412,6 +1499,14 @@ synonym: "affects" RELATED [] holds_over_chain: RO:0002327 RO:0002418 is_a: RO:0002500 ! causal agent in +[Typedef] +id: RO:0002286 +name: developmentally succeeded by +def: "Inverse of developmentally preceded by" [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002384 ! has developmental potential involving + [Typedef] id: RO:0002304 name: causally upstream of, positive effect @@ -1599,6 +1694,38 @@ property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "This relation is added for formal completeness. It is unlikely to be used in many practical scenarios" xsd:string is_a: RO:0002131 ! overlaps +[Typedef] +id: RO:0002384 +name: has developmental potential involving +def: "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction)." [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002324 ! developmentally related to + +[Typedef] +id: RO:0002385 +name: has potential to developmentally contribute to +def: "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002384 ! has developmental potential involving + +[Typedef] +id: RO:0002387 +name: has potential to develop into +def: "x has the potential to develop into y iff x develops into y or if x is capable of developing into y" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002384 ! has developmental potential involving + +[Typedef] +id: RO:0002388 +name: has potential to directly develop into +def: "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y" [] +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002387 ! has potential to develop into + [Typedef] id: RO:0002404 name: causally downstream of diff --git a/src/ontology/imports/pco_import.owl b/src/ontology/imports/pco_import.owl index 20946f19..21265188 100644 --- a/src/ontology/imports/pco_import.owl +++ b/src/ontology/imports/pco_import.owl @@ -15,7 +15,7 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -172,7 +172,13 @@ We also have the outstanding issue of how to aim different definitions to differ - + + curator note + + An administrative note of use for a curator but of no use for a user + PERSON:Alan Ruttenberg + curator note + @@ -192,7 +198,16 @@ We also have the outstanding issue of how to aim different definitions to differ - + + expand expression to + ObjectProperty: RO_0002104 +Label: has plasma membrane part +Annotations: IAO_0000424 "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.org/obo/owl/GO#GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)" + + A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones + Chris Mungall + expand expression to + @@ -215,13 +230,25 @@ We also have the outstanding issue of how to aim different definitions to differ - + + elucidation + person:Alan Ruttenberg + Person:Barry Smith + Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms + elucidation + - + + has axiom id + Person:Alan Ruttenberg + Person:Alan Ruttenberg + A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI + has axiom label + @@ -264,14 +291,34 @@ We also have the outstanding issue of how to aim different definitions to differ + defined by inverse + + + + + + - + + relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y + The general property hierarchy is: + + "directly P" SubPropertyOf "P" + Transitive(P) + +Where we have an annotation assertion + + "directly P" "is direct form of" "P" + If we have the annotation P is-direct-form-of Q, and we have inverses P' and Q', then it follows that P' is-direct-form-of Q' + Chris Mungall + is direct form of + @@ -307,6 +354,7 @@ We also have the outstanding issue of how to aim different definitions to differ + eco subset @@ -1002,6 +1050,44 @@ range: spatial region or site (immaterial continuant) + + + + + + + + + + x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y + Chris Mungall + David Osumi-Sutherland + Melissa Haendel + Terry Meehan + This is the transitive form of the develops from relation + develops from + + + + + + + + + + + + + inverse of develops from + Chris Mungall + David Osumi-Sutherland + Terry Meehan + + develops into + + + + @@ -1195,6 +1281,62 @@ range: spatial region or site (immaterial continuant) + + + + + + + + + + + + Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong] + + x has developmental contribution from y iff x has some part z such that z develops from y + Chris Mungall + has developmental contribution from + + + + + + + + + + + + + + + inverse of has developmental contribution from + Chris Mungall + + developmentally contributes to + + + + + + + + + + + + + Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p + false + Chris Mungall + In general you should not use this relation to make assertions - use one of the more specific relations below this one + This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from + developmentally preceded by + + + + @@ -1224,6 +1366,18 @@ range: spatial region or site (immaterial continuant) + + + + + + Inverse of developmentally preceded by + Chris Mungall + developmentally succeeded by + + + + @@ -1586,6 +1740,54 @@ However, this is not possible in OWL. We instead make this relation a sub-relati + + + + + + x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction). + Chris Mungall + has developmental potential involving + + + + + + + + + + x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y + Chris Mungall + has potential to developmentally contribute to + + + + + + + + + + x has the potential to develop into y iff x develops into y or if x is capable of developing into y + Chris Mungall + has potential to develop into + + + + + + + + + + x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y + Chris Mungall + has potential to directly develop into + + + + @@ -2406,6 +2608,17 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances. + realizable entity + + + + @@ -3110,6 +3323,17 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + + membrane + + + + @@ -3169,6 +3393,15 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + response to stimulus + + + + diff --git a/src/ontology/imports/ro_import.json b/src/ontology/imports/ro_import.json index 460bee9c..124568db 100644 --- a/src/ontology/imports/ro_import.json +++ b/src/ontology/imports/ro_import.json @@ -11,603 +11,608 @@ "type" : "CLASS", "lbl" : "molecular_function" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002331", + "id" : "http://purl.obolibrary.org/obo/RO_0002297", "meta" : { - "definition" : { - "val" : "c involved_in p if and only if c enables some process p', and p' is part of p", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Involved_in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "enables part of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "actively involved in" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GOC:mtg_berkeley_2013" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "results_in_formation_of" } ] }, "type" : "PROPERTY", - "lbl" : "involved in" + "lbl" : "results in formation of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002211", + "id" : "http://purl.obolibrary.org/obo/RO_0002295", "meta" : { "definition" : { - "val" : "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.", + "val" : "p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss).", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Hill" + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "results_in_developmental_progression_of" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Ontology_extensions" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "results in developmental progression of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002604", + "meta" : { + "definition" : { + "val" : "x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x).", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'anterior end of organism' is-opposite-of 'posterior end of organism'" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Regulation precludes parthood; the regulatory process may not be within the regulated process." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Tanya Berardini" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", - "val" : "false" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "GO" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "regulates (processual)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'increase in temperature' is-opposite-of 'decrease in temperature'" } ] }, "type" : "PROPERTY", - "lbl" : "regulates" + "lbl" : "is opposite of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000402", + "id" : "http://purl.obolibrary.org/obo/CL_0000000", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/cl.owl" + } ] + }, "type" : "CLASS", - "lbl" : "branched" + "lbl" : "cell" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002212", + "id" : "http://purl.obolibrary.org/obo/PATO_0000001", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "quality (PATO)" + } ] + }, + "type" : "CLASS", + "lbl" : "quality" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0016740", + "type" : "CLASS", + "lbl" : "transferase activity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002608", "meta" : { "definition" : { - "val" : "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", + "val" : "Inverse of 'causal agent in process'", "xrefs" : [ ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "negatively regulates (process to process)" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002211" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "negatively regulates" + "lbl" : "process has causal agent" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002333", + "id" : "http://purl.obolibrary.org/obo/RO_0002609", "meta" : { "definition" : { - "val" : "inverse of enables", + "val" : "A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." } ] }, "type" : "PROPERTY", - "lbl" : "enabled by" + "lbl" : "obsolete related via dependence to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002450", + "id" : "http://purl.obolibrary.org/obo/RO_0002286", "meta" : { "definition" : { - "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.", + "val" : "Inverse of developmentally preceded by", "xrefs" : [ ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "molecularly increases activity of", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "activates" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "PROPERTY", - "lbl" : "activity directly positively regulates activity of" + "lbl" : "developmentally succeeded by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002448", + "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", + "type" : "PROPERTY", + "lbl" : "has_related_synonym" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0003001", "meta" : { "definition" : { - "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.", + "val" : "a produced_by b iff some process that occurs_in b has_output a.", "xrefs" : [ ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "molecularly controls", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "val" : "Melissa Haendel" } ] }, "type" : "PROPERTY", - "lbl" : "activity directly regulates activity of" + "lbl" : "produced by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002327", + "id" : "http://purl.obolibrary.org/obo/RO_0003000", "meta" : { + "definition" : { + "val" : "a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "is executing" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "is catalyzing" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "catalyzes" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "executes" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "a particular instances of akt-2 enables some instance of protein kinase activity" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "val" : "Melissa Haendel" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "PROPERTY", - "lbl" : "enables" + "lbl" : "produces" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002449", + "id" : "http://purl.obolibrary.org/obo/PATO_0000141", + "type" : "CLASS", + "lbl" : "structure" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000412", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "imported from" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000080", "meta" : { "definition" : { - "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.", + "val" : "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence", "xrefs" : [ ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "molecularly decreases activity of", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A quality inheres in its bearer at all times for which the quality exists." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "inhibits" + "val" : "quality_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is quality of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this red color is a quality of this apple" } ] }, "type" : "PROPERTY", - "lbl" : "activity directly negatively regulates activity of" + "lbl" : "quality of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002328", + "id" : "http://purl.obolibrary.org/obo/RO_0002022", "meta" : { - "definition" : { - "val" : "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "This is a grouping relation that collects relations used for the purpose of connecting structure and function" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:24Z" } ] }, "type" : "PROPERTY", - "lbl" : "functionally related to" + "lbl" : "directly regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002329", + "id" : "http://purl.obolibrary.org/obo/RO_0002385", "meta" : { "definition" : { - "val" : "this relation holds between c and p when c is part of some c', and c' is capable of p.", + "val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y", "xrefs" : [ ] }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "false" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, "type" : "PROPERTY", - "lbl" : "part of structure that is capable of" + "lbl" : "has potential to developmentally contribute to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002604", + "id" : "http://purl.obolibrary.org/obo/RO_0002264", "meta" : { "definition" : { - "val" : "x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x).", + "val" : "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.", "xrefs" : [ ] }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "'anterior end of organism' is-opposite-of 'posterior end of organism'" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "'increase in temperature' is-opposite-of 'decrease in temperature'" + "val" : "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." } ] }, "type" : "PROPERTY", - "lbl" : "is opposite of" + "lbl" : "acts upstream of or within" }, { - "id" : "http://purl.obolibrary.org/obo/CL_0000000", + "id" : "http://purl.obolibrary.org/obo/RO_0002023", "meta" : { + "definition" : { + "val" : "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.", + "xrefs" : [ "GOC:dos" ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/cl.owl" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:38Z" } ] }, - "type" : "CLASS", - "lbl" : "cell" + "type" : "PROPERTY", + "lbl" : "directly negatively regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000050", + "id" : "http://purl.obolibrary.org/obo/RO_0002024", "meta" : { "definition" : { - "val" : "a core relation that holds between a part and its whole", - "xrefs" : [ ] + "val" : "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.", + "xrefs" : [ "GOC:dos" ] }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my brain is part of my body (continuant parthood, two material entities)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "part_of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "is part of" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000004" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000003" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000002" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000020" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this day is part of this year (occurrent parthood)" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000017" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000019" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000031" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:47Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" } ] }, "type" : "PROPERTY", - "lbl" : "part of" + "lbl" : "directly positively regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002323", + "id" : "http://purl.obolibrary.org/obo/RO_0002387", "meta" : { "definition" : { - "val" : "A mereological relationship or a topological relationship", + "val" : "x has the potential to develop into y iff x develops into y or if x is capable of developing into y", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "mereotopologically related to" + "lbl" : "has potential to develop into" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002202", + "id" : "http://purl.obolibrary.org/obo/RO_0002388", "meta" : { "definition" : { - "val" : "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y", + "val" : "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Terry Meehan" - }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to directly develop into" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002025", + "meta" : { + "definition" : { + "val" : "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.", + "xrefs" : [ "GOC:dos" ] + }, + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This is the transitive form of the develops from relation" + "val" : "This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations." }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Melissa Haendel" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-22T14:14:36Z" } ] }, "type" : "PROPERTY", - "lbl" : "develops from" + "lbl" : "has effector activity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002324", + "id" : "http://purl.obolibrary.org/obo/RO_0000086", "meta" : { "definition" : { - "val" : "A relationship that holds between entities participating in some developmental process (GO:0032502)", + "val" : "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this apple has quality this red color" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." } ] }, "type" : "PROPERTY", - "lbl" : "developmentally related to" + "lbl" : "has quality" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002566", + "id" : "http://purl.obolibrary.org/obo/RO_0002263", "meta" : { "definition" : { - "val" : "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b", + "val" : "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "causally influences (material entity to material entity)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." } ] }, "type" : "PROPERTY", - "lbl" : "causally influences" + "lbl" : "acts upstream of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002203", + "id" : "http://purl.obolibrary.org/obo/RO_0002384", "meta" : { "definition" : { - "val" : "inverse of develops from", + "val" : "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Terry Meehan" } ] }, "type" : "PROPERTY", - "lbl" : "develops into" + "lbl" : "has developmental potential involving" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002447", + "id" : "http://purl.obolibrary.org/obo/RO_0002019", "meta" : { + "definition" : { + "val" : "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Axiomatization to GO to be added later" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-07-19T17:30:36Z" } ] }, "type" : "PROPERTY", - "lbl" : "phosphorylates" + "lbl" : "has ligand" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000001", + "id" : "http://purl.obolibrary.org/obo/PATO_0001241", + "type" : "CLASS", + "lbl" : "physical object quality" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002015", "meta" : { + "definition" : { + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "quality (PATO)" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:17Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'." } ] }, - "type" : "CLASS", - "lbl" : "quality" + "type" : "PROPERTY", + "lbl" : "has positive regulatory component activity" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000116", + "id" : "http://purl.obolibrary.org/obo/RO_0002379", "meta" : { + "definition" : { + "val" : "x spatially_coextensive_with y if and inly if x and y have the same location", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A lump of clay and a statue" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation is added for formal completeness. It is unlikely to be used in many practical scenarios" } ] }, "type" : "PROPERTY", - "lbl" : "editor note" + "lbl" : "spatially coextensive with" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000117", + "id" : "http://purl.obolibrary.org/obo/RO_0002258", "meta" : { + "definition" : { + "val" : "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "In general you should not use this relation to make assertions - use one of the more specific relations below this one" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from" } ] }, "type" : "PROPERTY", - "lbl" : "term editor" + "lbl" : "developmentally preceded by" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000114", + "id" : "http://purl.obolibrary.org/obo/RO_0002259", "type" : "PROPERTY", - "lbl" : "has curation status" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016740", - "type" : "CLASS", - "lbl" : "transferase activity" + "lbl" : "defined by inverse" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000115", + "id" : "http://purl.obolibrary.org/obo/RO_0002017", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:44:33Z" } ] }, "type" : "PROPERTY", - "lbl" : "definition" + "lbl" : "has component activity" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000051", + "id" : "http://purl.obolibrary.org/obo/RO_0002018", "meta" : { "definition" : { - "val" : "a core relation that holds between a whole and its part", + "val" : "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my body has part my brain (continuant parthood, two material entities)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "has part" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has_part" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:49:21Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this year has part this day (occurrent parthood)" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" } ] }, "type" : "PROPERTY", - "lbl" : "has part" + "lbl" : "has component process" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000112", + "id" : "http://purl.obolibrary.org/obo/IAO_0000424", + "type" : "PROPERTY", + "lbl" : "expand expression to" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0000000", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" } ] }, - "type" : "PROPERTY", - "lbl" : "example of usage" + "type" : "CLASS", + "lbl" : "anatomical entity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002608", + "id" : "http://purl.obolibrary.org/obo/CARO_0000003", "meta" : { - "definition" : { - "val" : "Inverse of 'causal agent in process'", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" } ] }, - "type" : "PROPERTY", - "lbl" : "process has causal agent" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000111", - "type" : "PROPERTY", - "lbl" : "editor preferred term" + "type" : "CLASS", + "lbl" : "connected anatomical structure" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000118", + "id" : "http://purl.obolibrary.org/obo/CARO_0000006", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" } ] }, - "type" : "PROPERTY", - "lbl" : "alternative term" + "type" : "CLASS", + "lbl" : "material anatomical entity" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000119", + "id" : "http://purl.obolibrary.org/obo/RO_0002254", "meta" : { + "definition" : { + "val" : "x has developmental contribution from y iff x has some part z such that z develops from y", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "definition source" + "lbl" : "has developmental contribution from" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002286", + "id" : "http://purl.obolibrary.org/obo/RO_0002255", "meta" : { "definition" : { - "val" : "Inverse of developmentally preceded by", + "val" : "inverse of has developmental contribution from", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" @@ -617,1968 +622,2600 @@ } ] }, "type" : "PROPERTY", - "lbl" : "developmentally succeeded by" + "lbl" : "developmentally contributes to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002563", + "id" : "http://purl.obolibrary.org/obo/RO_0002013", "meta" : { + "definition" : { + "val" : "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:30:46Z" }, { - "pred" : "http://xmlns.com/foaf/0.1/page", - "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" } ] }, "type" : "PROPERTY", - "lbl" : "interaction relation helper property" + "lbl" : "has regulatory component activity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002564", + "id" : "http://purl.obolibrary.org/obo/RO_0002014", "meta" : { + "definition" : { + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:01Z" } ] }, "type" : "PROPERTY", - "lbl" : "molecular interaction relation helper property" + "lbl" : "has negative regulatory component activity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002559", + "id" : "http://purl.obolibrary.org/obo/GO_0044464", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "causally influenced by (material entity to material entity)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" } ] }, - "type" : "PROPERTY", - "lbl" : "causally influenced by" + "type" : "CLASS", + "lbl" : "cell part" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0001900", + "id" : "http://purl.obolibrary.org/obo/RO_0002131", "meta" : { "definition" : { - "val" : "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.", + "val" : "x overlaps y if and only if there exists some z such that x has part z and z part of y", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://xmlns.com/foaf/0.1/page", - "val" : "https://github.com/oborel/obo-relations/wiki/ROAndTime" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" } ] }, "type" : "PROPERTY", - "lbl" : "temporal interpretation" + "lbl" : "overlaps" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0001901", + "id" : "http://purl.obolibrary.org/obo/CARO_0000014", "meta" : { - "definition" : { - "val" : "\n\n## Elucidation\n\nThis is used when the statement/axiom is assumed to hold true 'eternally'\n\n## How to interpret (informal)\n\nFirst the \"atemporal\" FOL is derived from the OWL using the standard\ninterpretation. This axiom is temporalized by embedding the axiom\nwithin a for-all-times quantified sentence. The t argument is added to\nall instantiation predicates and predicates that use this relation.\n\n## Example\n\n Class: nucleus\n SubClassOf: part_of some cell\n\n forall t :\n forall n :\n instance_of(n,Nucleus,t)\n implies\n exists c :\n instance_of(c,Cell,t)\n part_of(n,c,t)\n\n## Notes\n\nThis interpretation is *not* the same as an at-all-times relation\n\n", - "xrefs" : [ ] - } + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/caro.owl" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "cell part (CARO)" + } ] }, - "type" : "INDIVIDUAL", - "lbl" : "axiom holds for all times" + "type" : "CLASS", + "lbl" : "cell part" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002434", + "id" : "http://purl.obolibrary.org/obo/GO_0016020", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "membrane" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002481", "meta" : { - "definition" : { - "val" : "A relationship that holds between two entities in which the processes executed by the two entities are causally connected.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "in pairwise interaction with", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://xmlns.com/foaf/0.1/page", - "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://purl.obolibrary.org/obo/MI_0914" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Considering relabeling as 'pairwise interacts with'" } ] }, "type" : "PROPERTY", - "lbl" : "interacts with" + "lbl" : "is kinase activity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002314", + "id" : "http://purl.obolibrary.org/obo/RO_0000057", "meta" : { "definition" : { - "val" : "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.", + "val" : "a relation between a process and a continuant, in which the continuant is somehow involved in the process", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this process has participant this input material (or this output material)" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205" + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:has_participant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this blood coagulation has participant this blood clot" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has participant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_participant" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" + "val" : "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this investigation has participant this investigator" } ] }, "type" : "PROPERTY", - "lbl" : "inheres in part of" + "lbl" : "has participant" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002436", + "id" : "http://purl.obolibrary.org/obo/RO_0001025", "meta" : { "definition" : { - "val" : "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.", + "val" : "a relation between two independent continuants, the target and the location, in which the target is entirely within the location", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "located_in" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://purl.obolibrary.org/obo/ECO_0000353" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "molecularly binds with" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://purl.obolibrary.org/obo/MI_0915" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my brain is located in my head" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "binds" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this rat is located in this cage" + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:located_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "located in" } ] }, "type" : "PROPERTY", - "lbl" : "molecularly interacts with" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", - "type" : "PROPERTY", - "lbl" : "has_related_synonym" + "lbl" : "located in" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000125", + "id" : "http://purl.obolibrary.org/obo/RO_0002598", "meta" : { + "definition" : { + "val" : "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "renin -> arteriolar smooth muscle contraction" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, - "type" : "INDIVIDUAL", - "lbl" : "pending final vetting" + "type" : "PROPERTY", + "lbl" : "capable of positively regulating" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000040", + "id" : "http://purl.obolibrary.org/obo/RO_0002479", "meta" : { "definition" : { - "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.", + "val" : "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.", "xrefs" : [ ] - } + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] }, - "type" : "CLASS", - "lbl" : "material entity" + "type" : "PROPERTY", + "lbl" : "has part that occurs in" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002430", + "id" : "http://purl.obolibrary.org/obo/IAO_0000600", + "type" : "PROPERTY", + "lbl" : "elucidation" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002352", "meta" : { "definition" : { - "val" : "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p", + "val" : "inverse of has input", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002428" } ] }, "type" : "PROPERTY", - "lbl" : "involved in negative regulation of" + "lbl" : "input of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002431", + "id" : "http://purl.obolibrary.org/obo/RO_0002473", "meta" : { "definition" : { - "val" : "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p", + "val" : "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "OWL does not allow defining object properties via a Union" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "involved in or reguates" } ] }, "type" : "PROPERTY", - "lbl" : "involved in or involved in regulation of" + "lbl" : "composed primarily of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002432", + "id" : "http://purl.obolibrary.org/obo/RO_0000052", "meta" : { "definition" : { - "val" : "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.", - "xrefs" : [ "GOC:cjm", "GOC:dos" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "enables activity in", + "val" : "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this red color inheres in this apple" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "A protein that enables activity in a cytosol." + "val" : "this fragility inheres in this vase" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A dependent inheres in its bearer at all times for which the dependent exists." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "inheres in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "executes activity in" + "val" : "inheres_in" } ] }, "type" : "PROPERTY", - "lbl" : "is active in" + "lbl" : "inheres in" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002305", + "id" : "http://purl.obolibrary.org/obo/RO_0002595", "meta" : { + "definition" : { + "val" : "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002411" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." }, { - "pred" : "http://purl.org/dc/terms/creator", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "causally upstream of, negative effect" + "lbl" : "causal relation between material entity and a process" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002427", + "id" : "http://purl.obolibrary.org/obo/RO_0002353", "meta" : { "definition" : { - "val" : "inverse of causally upstream of or within", + "val" : "inverse of has output", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, "type" : "PROPERTY", - "lbl" : "causally downstream of or within" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000141", - "type" : "CLASS", - "lbl" : "structure" + "lbl" : "output of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002428", + "id" : "http://purl.obolibrary.org/obo/RO_0002596", "meta" : { "definition" : { - "val" : "c involved in regulation of p if c is involved in some p' and p' regulates some p", + "val" : "Holds between c and p if and only if c is capable of some activity a, and a regulates p.", "xrefs" : [ ] }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "pyrethroid -> growth" + } ] + }, + "type" : "PROPERTY", + "lbl" : "capable of regulating" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002354", + "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "involved in regulation of" + "lbl" : "formed as result of" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0008150", - "type" : "CLASS", - "lbl" : "biological_process" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002429", + "id" : "http://purl.obolibrary.org/obo/RO_0002233", "meta" : { "definition" : { - "val" : "c involved in regulation of p if c is involved in some p' and p' positively regulates some p", + "val" : "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "consumes" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002428" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "PROPERTY", - "lbl" : "involved in positive regulation of" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001199", - "type" : "CLASS", - "lbl" : "linear" + "lbl" : "has input" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002304", + "id" : "http://purl.obolibrary.org/obo/RO_0002234", "meta" : { + "definition" : { + "val" : "p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/terms/creator", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "produces" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002411" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "causally upstream of, positive effect" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", - "type" : "PROPERTY", - "lbl" : "has_obo_format_version" + "lbl" : "has output" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000412", + "id" : "http://purl.obolibrary.org/obo/RO_0002597", "meta" : { + "definition" : { + "val" : "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, "type" : "PROPERTY", - "lbl" : "imported from" + "lbl" : "capable of negatively regulating" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004047", + "id" : "http://purl.obolibrary.org/obo/RO_0000056", "meta" : { + "definition" : { + "val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002418" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this investigator participates in this investigation" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-03-13T23:55:19Z" - } ] - }, - "type" : "PROPERTY", - "lbl" : "causally upstream of or within, positive effect" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002022", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this input material (or this output material) participates in this process" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "participates_in" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-09-17T13:52:24Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this blood clot participates in this blood coagulation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "participates in" } ] }, "type" : "PROPERTY", - "lbl" : "directly regulated by" + "lbl" : "participates in" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002385", + "id" : "http://purl.obolibrary.org/obo/RO_0002350", "meta" : { "definition" : { - "val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y", + "val" : "is member of is a mereological relation between a item and a collection.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "SIO" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "member part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "An organism that is a member of a population of organisms" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is member of" } ] }, "type" : "PROPERTY", - "lbl" : "has potential to developmentally contribute to" + "lbl" : "member of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002264", + "id" : "http://purl.obolibrary.org/obo/RO_0000053", "meta" : { "definition" : { - "val" : "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.", + "val" : "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", "xrefs" : [ ] }, - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "affects", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "bearer of" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." + "val" : "this vase is bearer of this fragility" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this apple is bearer of this red color" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "bearer_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is bearer of" } ] }, "type" : "PROPERTY", - "lbl" : "acts upstream of or within" + "lbl" : "bearer of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002023", + "id" : "http://purl.obolibrary.org/obo/RO_0002351", "meta" : { "definition" : { - "val" : "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.", - "xrefs" : [ "GOC:dos" ] + "val" : "has member is a mereological relation between a collection and an item.", + "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "SIO" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-09-17T13:52:38Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] }, "type" : "PROPERTY", - "lbl" : "directly negatively regulated by" + "lbl" : "has member" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004046", + "id" : "http://purl.obolibrary.org/obo/RO_0001018", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-03-13T23:55:05Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Intended meaning:\ndomain: material entity\nrange: spatial region or site (immaterial continuant)\n " }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002418" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "contained_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "contained in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Containment is location not involving parthood, and arises only where some immaterial continuant is involved." } ] }, "type" : "PROPERTY", - "lbl" : "causally upstream of or within, negative effect" + "lbl" : "contained in" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002024", + "id" : "http://purl.obolibrary.org/obo/RO_0001019", "meta" : { - "definition" : { - "val" : "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.", - "xrefs" : [ "GOC:dos" ] - }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-09-17T13:52:47Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "contains" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" } ] }, "type" : "PROPERTY", - "lbl" : "directly positively regulated by" + "lbl" : "contains" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002387", + "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "type" : "PROPERTY", + "lbl" : "shorthand" + }, { + "id" : "http://purl.obolibrary.org/obo/CARO_0030000", + "type" : "CLASS", + "lbl" : "biological entity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001015", "meta" : { "definition" : { - "val" : "x has the potential to develop into y iff x develops into y or if x is capable of developing into y", + "val" : "a relation between two independent continuants, the location and the target, in which the target is entirely within the location", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this cage is the location of this rat" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "is location of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my head is the location of my brain" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "location_of" } ] }, "type" : "PROPERTY", - "lbl" : "has potential to develop into" + "lbl" : "location of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002388", + "id" : "http://purl.obolibrary.org/obo/RO_0002584", "meta" : { "definition" : { - "val" : "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y", + "val" : "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p", "xrefs" : [ ] }, "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, "type" : "PROPERTY", - "lbl" : "has potential to directly develop into" + "lbl" : "has part structure that is capable of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002025", + "id" : "http://purl.obolibrary.org/obo/RO_0002222", "meta" : { - "definition" : { - "val" : "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.", - "xrefs" : [ "GOC:dos" ] - }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/terms/source", + "val" : "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations." + "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-09-22T14:14:36Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "has effector activity" + "lbl" : "temporally related to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002263", + "id" : "http://purl.obolibrary.org/obo/RO_0002464", "meta" : { - "definition" : { - "val" : "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." } ] }, "type" : "PROPERTY", - "lbl" : "acts upstream of" + "lbl" : "helper property (not for use in curation)" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002384", + "id" : "http://purl.obolibrary.org/obo/RO_0002581", "meta" : { "definition" : { - "val" : "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).", + "val" : "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL", "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - } ] + } }, "type" : "PROPERTY", - "lbl" : "has developmental potential involving" + "lbl" : "is a defining property chain axiom" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002019", + "id" : "http://purl.obolibrary.org/obo/RO_0002582", "meta" : { "definition" : { - "val" : "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.", + "val" : "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.", + "xrefs" : [ ] + } + }, + "type" : "PROPERTY", + "lbl" : "is a defining property chain axiom where second argument is reflexive" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002217", + "meta" : { + "definition" : { + "val" : "x actively participates in y if and only if x participates in y and x realizes some active role", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "agent in" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-07-19T17:30:36Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "has ligand" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001241", - "type" : "CLASS", - "lbl" : "physical object quality" + "lbl" : "actively participates in" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002418", + "id" : "http://purl.obolibrary.org/obo/RO_0002218", "meta" : { "definition" : { - "val" : "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.", + "val" : "x has participant y if and only if x realizes some active role that inheres in y", "xrefs" : [ ] }, - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "affects", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'heart development' has active participant some Shh protein" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" + "val" : "This may be obsoleted and replaced by the original 'has agent' relation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "influences (processual)" + "val" : "has agent" } ] }, "type" : "PROPERTY", - "lbl" : "causally upstream of or within" + "lbl" : "obsolete has active participant" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002015", + "id" : "http://purl.obolibrary.org/obo/RO_0002334", "meta" : { "definition" : { - "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.", + "val" : "inverse of regulates", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-05-24T09:31:17Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "regulated by (processual)" } ] }, "type" : "PROPERTY", - "lbl" : "has positive regulatory component activity" + "lbl" : "regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002411", + "id" : "http://purl.obolibrary.org/obo/RO_0002213", "meta" : { "definition" : { - "val" : "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain", + "val" : "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "positively regulates (process to process)" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, "type" : "PROPERTY", - "lbl" : "causally upstream of" + "lbl" : "positively regulates" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002258", + "id" : "http://purl.obolibrary.org/obo/RO_0002335", "meta" : { "definition" : { - "val" : "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p", + "val" : "inverse of negatively regulates", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "false" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "In general you should not use this relation to make assertions - use one of the more specific relations below this one" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from" } ] }, "type" : "PROPERTY", - "lbl" : "developmentally preceded by" + "lbl" : "negatively regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002412", + "id" : "http://purl.obolibrary.org/obo/RO_0002577", "meta" : { "definition" : { - "val" : "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.", + "val" : "A material entity consisting of multiple components that are causally integrated.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002575", - "val" : "http://purl.obolibrary.org/obo/RO_0002411" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.jbiomedsem.com/content/4/1/43" } ] }, - "type" : "PROPERTY", - "lbl" : "immediately causally upstream of" + "type" : "CLASS", + "lbl" : "system" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002017", + "id" : "http://purl.obolibrary.org/obo/GO_0042995", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-05-24T09:44:33Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" } ] }, - "type" : "PROPERTY", - "lbl" : "has component activity" + "type" : "CLASS", + "lbl" : "cell projection" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002018", + "id" : "http://purl.obolibrary.org/obo/RO_0002578", "meta" : { "definition" : { - "val" : "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", + "val" : "Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-05-24T09:49:21Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly regulates (processual)" } ] }, "type" : "PROPERTY", - "lbl" : "has component process" + "lbl" : "directly regulates" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000066", + "id" : "http://purl.obolibrary.org/obo/RO_0002215", "meta" : { "definition" : { - "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "val" : "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. ", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "occurs_in" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "unfolds_in" + "val" : "has function realized in" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", - "val" : "http://purl.obolibrary.org/obo/bfo.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/21208450" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "unfolds in" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20123131" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "occurs in" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "osteoclast SubClassOf 'capable of' some 'bone resorption'" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "RO_0000053 some (RO_0000054 only ?Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" } ] }, "type" : "PROPERTY", - "lbl" : "occurs in" + "lbl" : "capable of" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "id" : "http://purl.obolibrary.org/obo/RO_0002336", "meta" : { "definition" : { - "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "val" : "inverse of positively regulates", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "site of" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", - "val" : "http://purl.obolibrary.org/obo/bfo.owl" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "contains process" + "lbl" : "positively regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000062", + "id" : "http://purl.obolibrary.org/obo/RO_0002216", "meta" : { "definition" : { - "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "val" : "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "is preceded by" - }, { - "pred" : "http://purl.org/dc/elements/1.1/source", - "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "preceded_by" + "val" : "has function in" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "preceded by" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" } ] }, "type" : "PROPERTY", - "lbl" : "preceded by" + "lbl" : "capable of part of" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000063", + "id" : "http://purl.obolibrary.org/obo/CARO_0001010", + "type" : "CLASS", + "lbl" : "organism or virus or viroid" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002331", "meta" : { "definition" : { - "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "val" : "c involved_in p if and only if c enables some process p', and p' is part of p", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "precedes" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Involved_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "enables part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "actively involved in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "precedes" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0003824", - "type" : "CLASS", - "lbl" : "catalytic activity" - }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0000000", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/caro.owl" - } ] - }, - "type" : "CLASS", - "lbl" : "anatomical entity" + "lbl" : "involved in" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0000003", + "id" : "http://purl.obolibrary.org/obo/RO_0002211", "meta" : { + "definition" : { + "val" : "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/caro.owl" - } ] - }, - "type" : "CLASS", - "lbl" : "connected anatomical structure" - }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000019", - "type" : "CLASS", - "lbl" : "quality" - }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0000006", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/caro.owl" - } ] - }, - "type" : "CLASS", - "lbl" : "material anatomical entity" - }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000015", - "meta" : { - "definition" : { - "val" : "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.", - "xrefs" : [ ] - } - }, - "type" : "CLASS", - "lbl" : "process" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002090", - "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Hill" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002575", - "val" : "http://purl.obolibrary.org/obo/BFO_0000063" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "ends_at_start_of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "meets" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Regulation precludes parthood; the regulatory process may not be within the regulated process." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Tanya Berardini" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GO" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "regulates (processual)" } ] }, "type" : "PROPERTY", - "lbl" : "immediately precedes" + "lbl" : "regulates" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002254", + "id" : "http://purl.obolibrary.org/obo/PATO_0000402", + "type" : "CLASS", + "lbl" : "branched" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002212", "meta" : { "definition" : { - "val" : "x has developmental contribution from y iff x has some part z such that z develops from y", + "val" : "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "negatively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "has developmental contribution from" + "lbl" : "negatively regulates" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004035", + "id" : "http://purl.obolibrary.org/obo/RO_0002575", "meta" : { "definition" : { - "val" : "c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative", + "val" : "relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of,_negative_effect" + "pred" : "http://purl.obolibrary.org/obo/RO_0002423", + "val" : "If we have the annotation P is-direct-form-of Q, and we have inverses P' and Q', then it follows that P' is-direct-form-of Q'" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002263" + "pred" : "http://purl.org/dc/terms/creator", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-01-26T23:53:22Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The general property hierarchy is:\n\n \"directly P\" SubPropertyOf \"P\"\n Transitive(P)\n\nWhere we have an annotation assertion\n\n \"directly P\" \"is direct form of\" \"P\"" } ] }, "type" : "PROPERTY", - "lbl" : "acts upstream of, negative effect" + "lbl" : "is direct form of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002255", + "id" : "http://purl.obolibrary.org/obo/RO_0002333", "meta" : { "definition" : { - "val" : "inverse of has developmental contribution from", + "val" : "inverse of enables", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "PROPERTY", - "lbl" : "developmentally contributes to" + "lbl" : "enabled by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002013", + "id" : "http://purl.obolibrary.org/obo/RO_0040042", "meta" : { "definition" : { - "val" : "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.", + "val" : "R is homemorphic for C iff (1) there exists some x,y such that x R y, and x and y instantiate C and (2) for all x, if x is an instance of C, and there exists some y some such that x R y, then it follows that y is an instance of C.", "xrefs" : [ ] }, "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/issues/164" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "R homeomorphic-for C expands to: C SubClassOf R only C. Additionally, for any class D that is disjoint with C, we can also expand to C DisjointWith R some D, D DisjointWith R some C." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "part-of is homeomorphic for independent continuants." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-05-24T09:30:46Z" + "val" : "2018-10-21T19:46:34Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "val" : "cjm" } ] }, "type" : "PROPERTY", - "lbl" : "has regulatory component activity" + "lbl" : "is homeomorphic for" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002014", + "id" : "http://purl.obolibrary.org/obo/RO_0002450", "meta" : { "definition" : { - "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.", + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.", "xrefs" : [ ] }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly increases activity of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-05-24T09:31:01Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "activates" } ] }, "type" : "PROPERTY", - "lbl" : "has negative regulatory component activity" + "lbl" : "activity directly positively regulates activity of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002410", + "id" : "http://purl.obolibrary.org/obo/RO_0002448", "meta" : { "definition" : { - "val" : "This relation groups causal relations between material entities and causal relations between processes", + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.", "xrefs" : [ ] }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly controls", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." } ] }, "type" : "PROPERTY", - "lbl" : "causally related to" + "lbl" : "activity directly regulates activity of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004032", + "id" : "http://purl.obolibrary.org/obo/RO_0002327", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within,_positive_effect" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is executing" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002264" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-01-26T23:49:30Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is catalyzing" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "catalyzes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "a particular instances of akt-2 enables some instance of protein kinase activity" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "acts upstream of or within, positive effect" + "lbl" : "enables" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004031", + "id" : "http://purl.obolibrary.org/obo/RO_0002449", "meta" : { "definition" : { - "val" : "Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.", + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.", "xrefs" : [ ] }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly decreases activity of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-01-25T23:20:13Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "inhibits" } ] }, "type" : "PROPERTY", - "lbl" : "enables subfunction" + "lbl" : "activity directly negatively regulates activity of" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0044464", + "id" : "http://purl.obolibrary.org/obo/RO_0002328", "meta" : { + "definition" : { + "val" : "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/go.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This is a grouping relation that collects relations used for the purpose of connecting structure and function" } ] }, - "type" : "CLASS", - "lbl" : "cell part" + "type" : "PROPERTY", + "lbl" : "functionally related to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004034", + "id" : "http://purl.obolibrary.org/obo/RO_0002329", "meta" : { "definition" : { - "val" : "c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive", + "val" : "this relation holds between c and p when c is part of some c', and c' is capable of p.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of,_positive_effect" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002263" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-01-26T23:53:14Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "false" } ] }, "type" : "PROPERTY", - "lbl" : "acts upstream of, positive effect" + "lbl" : "part of structure that is capable of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004033", + "id" : "http://purl.obolibrary.org/obo/BFO_0000050", "meta" : { + "definition" : { + "val" : "a core relation that holds between a part and its whole", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002264" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my brain is part of my body (continuant parthood, two material entities)" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-01-26T23:49:51Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "is part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000004" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000002" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this day is part of this year (occurrent parthood)" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000017" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000019" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000031" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." } ] }, "type" : "PROPERTY", - "lbl" : "acts upstream of or within, negative effect" + "lbl" : "part of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002131", + "id" : "http://purl.obolibrary.org/obo/RO_0002323", "meta" : { "definition" : { - "val" : "x overlaps y if and only if there exists some z such that x has part z and z part of y", + "val" : "A mereological relationship or a topological relationship", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" + }, { "pred" : "http://purl.obolibrary.org/obo/RO_0001900", "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", - "val" : "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "overlaps" + "lbl" : "mereotopologically related to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002404", + "id" : "http://purl.obolibrary.org/obo/RO_0002202", "meta" : { "definition" : { - "val" : "inverse of upstream of", + "val" : "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y", "xrefs" : [ ] }, "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This is the transitive form of the develops from relation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "PROPERTY", - "lbl" : "causally downstream of" + "lbl" : "develops from" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002405", + "id" : "http://purl.obolibrary.org/obo/RO_0002324", "meta" : { + "definition" : { + "val" : "A relationship that holds between entities participating in some developmental process (GO:0032502)", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" } ] }, "type" : "PROPERTY", - "lbl" : "immediately causally downstream of" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016301", - "type" : "CLASS", - "lbl" : "kinase activity" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", - "type" : "PROPERTY", - "lbl" : "in_subset" + "lbl" : "developmentally related to" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0000014", + "id" : "http://purl.obolibrary.org/obo/RO_0002566", "meta" : { + "definition" : { + "val" : "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/caro.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "cell part (CARO)" + "val" : "causally influences (material entity to material entity)" } ] }, - "type" : "CLASS", - "lbl" : "cell part" + "type" : "PROPERTY", + "lbl" : "causally influences" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000004", + "id" : "http://purl.obolibrary.org/obo/RO_0002203", "meta" : { "definition" : { - "val" : "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.", + "val" : "inverse of develops from", "xrefs" : [ ] - } + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" + } ] }, - "type" : "CLASS", - "lbl" : "independent continuant" + "type" : "PROPERTY", + "lbl" : "develops into" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002481", + "id" : "http://purl.obolibrary.org/obo/RO_0002447", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Axiomatization to GO to be added later" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "is kinase activity" + "lbl" : "phosphorylates" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002086", + "id" : "http://purl.obolibrary.org/obo/RO_0002326", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" + "val" : "Chris Mungall" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to \"ribosome binding\". And all three are part_of an eIF2 complex" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We would like to say\n\nif and only if\n exists c', p'\n c part_of c' and c' capable_of p\n and\n c capable_of p' and p' part_of p\nthen\n c contributes_to p\n\nHowever, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. " + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity." } ] }, "type" : "PROPERTY", - "lbl" : "ends after" + "lbl" : "contributes to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002087", + "id" : "http://purl.obolibrary.org/obo/IAO_0000116", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "starts_at_end_of" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" } ] }, "type" : "PROPERTY", - "lbl" : "immediately preceded by" + "lbl" : "editor note" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000051", - "type" : "CLASS", - "lbl" : "morphology" + "id" : "http://purl.obolibrary.org/obo/IAO_0000117", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "term editor" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000052", - "type" : "CLASS", - "lbl" : "shape" + "id" : "http://purl.obolibrary.org/obo/IAO_0000114", + "type" : "PROPERTY", + "lbl" : "has curation status" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000057", + "id" : "http://purl.obolibrary.org/obo/IAO_0000115", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "definition" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000051", "meta" : { "definition" : { - "val" : "a relation between a process and a continuant, in which the continuant is somehow involved in the process", + "val" : "a core relation that holds between a whole and its part", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this process has participant this input material (or this output material)" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { - "pred" : "http://purl.org/dc/elements/1.1/source", - "val" : "http://www.obofoundry.org/ro/#OBO_REL:has_participant" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this blood coagulation has participant this blood clot" + "val" : "my body has part my brain (continuant parthood, two material entities)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "has participant" + "val" : "has part" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has_participant" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." + "val" : "has_part" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this investigation has participant this investigator" + "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this year has part this day (occurrent parthood)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has part" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000112", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "example of usage" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000111", + "type" : "PROPERTY", + "lbl" : "editor preferred term" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000232", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "curator note" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000118", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "alternative term" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000119", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + } ] + }, + "type" : "PROPERTY", + "lbl" : "definition source" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002563", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "interaction relation helper property" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002564", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecular interaction relation helper property" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002559", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influenced by (material entity to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally influenced by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001900", + "meta" : { + "definition" : { + "val" : "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/ROAndTime" + } ] + }, + "type" : "PROPERTY", + "lbl" : "temporal interpretation" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001901", + "meta" : { + "definition" : { + "val" : "\n\n## Elucidation\n\nThis is used when the statement/axiom is assumed to hold true 'eternally'\n\n## How to interpret (informal)\n\nFirst the \"atemporal\" FOL is derived from the OWL using the standard\ninterpretation. This axiom is temporalized by embedding the axiom\nwithin a for-all-times quantified sentence. The t argument is added to\nall instantiation predicates and predicates that use this relation.\n\n## Example\n\n Class: nucleus\n SubClassOf: part_of some cell\n\n forall t :\n forall n :\n instance_of(n,Nucleus,t)\n implies\n exists c :\n instance_of(c,Cell,t)\n part_of(n,c,t)\n\n## Notes\n\nThis interpretation is *not* the same as an at-all-times relation\n\n", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "axiom holds for all times" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002434", + "meta" : { + "definition" : { + "val" : "A relationship that holds between two entities in which the processes executed by the two entities are causally connected.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "in pairwise interaction with", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0914" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Considering relabeling as 'pairwise interacts with'" + } ] + }, + "type" : "PROPERTY", + "lbl" : "interacts with" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002314", + "meta" : { + "definition" : { + "val" : "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + } ] + }, + "type" : "PROPERTY", + "lbl" : "inheres in part of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002436", + "meta" : { + "definition" : { + "val" : "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/ECO_0000353" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "molecularly binds with" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0915" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "binds" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecularly interacts with" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000125", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "pending final vetting" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000040", + "meta" : { + "definition" : { + "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "material entity" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000122", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "ready for release" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0004050", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-03-14T00:03:24Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is negative form of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002430", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002428" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in negative regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002431", + "meta" : { + "definition" : { + "val" : "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "OWL does not allow defining object properties via a Union" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "involved in or reguates" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in or involved in regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002432", + "meta" : { + "definition" : { + "val" : "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.", + "xrefs" : [ "GOC:cjm", "GOC:dos" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "enables activity in", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A protein that enables activity in a cytosol." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes activity in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is active in" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002305", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + }, { + "pred" : "http://purl.org/dc/terms/creator", + "val" : "cjm" } ] }, "type" : "PROPERTY", - "lbl" : "has participant" + "lbl" : "causally upstream of, negative effect" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002598", + "id" : "http://purl.obolibrary.org/obo/RO_0002427", "meta" : { "definition" : { - "val" : "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.", + "val" : "inverse of causally upstream of or within", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "renin -> arteriolar smooth muscle contraction" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, "type" : "PROPERTY", - "lbl" : "capable of positively regulating" + "lbl" : "causally downstream of or within" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002479", + "id" : "http://purl.obolibrary.org/obo/RO_0002428", "meta" : { "definition" : { - "val" : "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.", + "val" : "c involved in regulation of p if c is involved in some p' and p' regulates some p", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "has part that occurs in" + "lbl" : "involved in regulation of" }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym", - "type" : "PROPERTY", - "lbl" : "has_broad_synonym" + "id" : "http://purl.obolibrary.org/obo/GO_0008150", + "type" : "CLASS", + "lbl" : "biological_process" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000002", + "id" : "http://purl.obolibrary.org/obo/RO_0002429", "meta" : { "definition" : { - "val" : "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.", + "val" : "c involved in regulation of p if c is involved in some p' and p' positively regulates some p", "xrefs" : [ ] - } + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002428" + } ] }, + "type" : "PROPERTY", + "lbl" : "involved in positive regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001199", "type" : "CLASS", - "lbl" : "continuant" + "lbl" : "linear" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000003", + "id" : "http://purl.obolibrary.org/obo/RO_0002304", "meta" : { - "definition" : { - "val" : "An entity that has temporal parts and that happens, unfolds or develops through time.", - "xrefs" : [ ] - } + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/terms/creator", + "val" : "cjm" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" + } ] }, - "type" : "CLASS", - "lbl" : "occurrent" + "type" : "PROPERTY", + "lbl" : "causally upstream of, positive effect" }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym", + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", "type" : "PROPERTY", - "lbl" : "has_exact_synonym" + "lbl" : "has_obo_format_version" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0005634", + "id" : "http://purl.obolibrary.org/obo/RO_0004047", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/go.owl" + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002418" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-03-13T23:55:19Z" } ] }, - "type" : "CLASS", - "lbl" : "nucleus" + "type" : "PROPERTY", + "lbl" : "causally upstream of or within, positive effect" }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref", + "id" : "http://purl.obolibrary.org/obo/RO_0004046", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-03-13T23:55:05Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002418" + } ] + }, "type" : "PROPERTY", - "lbl" : "database_cross_reference" + "lbl" : "causally upstream of or within, negative effect" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002352", + "id" : "http://purl.obolibrary.org/obo/RO_0004049", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-03-14T00:03:16Z" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is positive form of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002418", "meta" : { "definition" : { - "val" : "inverse of has input", + "val" : "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", "http://purl.obolibrary.org/obo/RO_0002259" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "influences (processual)" } ] }, "type" : "PROPERTY", - "lbl" : "input of" + "lbl" : "causally upstream of or within" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002473", + "id" : "http://purl.obolibrary.org/obo/RO_0002411", "meta" : { "definition" : { - "val" : "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.", + "val" : "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "causally upstream of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002412", + "meta" : { + "definition" : { + "val" : "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, "type" : "PROPERTY", - "lbl" : "composed primarily of" + "lbl" : "immediately causally upstream of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000052", + "id" : "http://purl.obolibrary.org/obo/BFO_0000066", "meta" : { "definition" : { - "val" : "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence", + "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this red color inheres in this apple" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "occurs_in" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this fragility inheres in this vase" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds_in" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "A dependent inheres in its bearer at all times for which the dependent exists." + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds in" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "inheres in" + "val" : "occurs in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "occurs in" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "meta" : { + "definition" : { + "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "site of" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "inheres_in" + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" } ] }, "type" : "PROPERTY", - "lbl" : "inheres in" + "lbl" : "contains process" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002595", + "id" : "http://purl.obolibrary.org/obo/BFO_0000062", "meta" : { "definition" : { - "val" : "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.", + "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is preceded by" + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "preceded_by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "preceded by" } ] }, "type" : "PROPERTY", - "lbl" : "causal relation between material entity and a process" + "lbl" : "preceded by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002596", + "id" : "http://purl.obolibrary.org/obo/BFO_0000063", "meta" : { "definition" : { - "val" : "Holds between c and p if and only if c is capable of some activity a, and a regulates p.", + "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "pyrethroid -> growth" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "precedes" } ] }, "type" : "PROPERTY", - "lbl" : "capable of regulating" + "lbl" : "precedes" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0003824", + "type" : "CLASS", + "lbl" : "catalytic activity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000019", + "type" : "CLASS", + "lbl" : "quality" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002233", + "id" : "http://purl.obolibrary.org/obo/BFO_0000015", "meta" : { "definition" : { - "val" : "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.", + "val" : "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.", "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + } + }, + "type" : "CLASS", + "lbl" : "process" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000428", + "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "consumes" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, - "type" : "PROPERTY", - "lbl" : "has input" + "type" : "INDIVIDUAL", + "lbl" : "requires discussion" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002630", + "id" : "http://purl.obolibrary.org/obo/BFO_0000017", "meta" : { "definition" : { - "val" : "Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2.", + "val" : "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.", "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "directly negatively regulates (process to process)" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002578" - } ] + } }, - "type" : "PROPERTY", - "lbl" : "directly negatively regulates" + "type" : "CLASS", + "lbl" : "realizable entity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002597", + "id" : "http://purl.obolibrary.org/obo/RO_0002090", "meta" : { - "definition" : { - "val" : "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.", - "xrefs" : [ ] - }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/BFO_0000063" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "ends_at_start_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "meets" } ] }, "type" : "PROPERTY", - "lbl" : "capable of negatively regulating" + "lbl" : "immediately precedes" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000056", + "id" : "http://purl.obolibrary.org/obo/RO_0004035", "meta" : { "definition" : { - "val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process", + "val" : "c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this investigator participates in this investigation" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this input material (or this output material) participates in this process" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "participates_in" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of,_negative_effect" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this blood clot participates in this blood coagulation" + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002263" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "participates in" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-26T23:53:22Z" } ] }, "type" : "PROPERTY", - "lbl" : "participates in" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002009", - "type" : "CLASS", - "lbl" : "branchiness" + "lbl" : "acts upstream of, negative effect" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000053", + "id" : "http://purl.obolibrary.org/obo/RO_0002410", "meta" : { "definition" : { - "val" : "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", + "val" : "This relation groups causal relations between material entities and causal relations between processes", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "bearer of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this vase is bearer of this fragility" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this apple is bearer of this red color" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." + "val" : "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "bearer_of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "is bearer of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." } ] }, "type" : "PROPERTY", - "lbl" : "bearer of" + "lbl" : "causally related to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002506", + "id" : "http://purl.obolibrary.org/obo/RO_0004032", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within,_positive_effect" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002264" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-26T23:49:30Z" } ] }, "type" : "PROPERTY", - "lbl" : "causal relation between material entities" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "type" : "PROPERTY", - "lbl" : "shorthand" - }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0030000", - "type" : "CLASS", - "lbl" : "biological entity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002124", - "type" : "CLASS", - "lbl" : "laminar" + "lbl" : "acts upstream of or within, positive effect" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002500", + "id" : "http://purl.obolibrary.org/obo/RO_0004031", "meta" : { "definition" : { - "val" : "A relationship between a material entity and a process where the material entity has some causal role that influences the process", + "val" : "Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-25T23:20:13Z" } ] }, "type" : "PROPERTY", - "lbl" : "causal agent in process" + "lbl" : "enables subfunction" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002501", + "id" : "http://purl.obolibrary.org/obo/RO_0004034", "meta" : { "definition" : { - "val" : "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q.", + "val" : "c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of,_positive_effect" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002263" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-26T23:53:14Z" } ] }, "type" : "PROPERTY", - "lbl" : "causal relation between processes" + "lbl" : "acts upstream of, positive effect" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002502", + "id" : "http://purl.obolibrary.org/obo/RO_0004033", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://purl.obolibrary.org/obo/BFO_0000169" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002264" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-01-26T23:49:51Z" } ] }, "type" : "PROPERTY", - "lbl" : "depends on" + "lbl" : "acts upstream of or within, negative effect" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002629", + "id" : "http://purl.obolibrary.org/obo/RO_0002404", "meta" : { "definition" : { - "val" : "Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.", + "val" : "inverse of upstream of", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002578" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "directly positively regulates (process to process)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, "type" : "PROPERTY", - "lbl" : "directly positively regulates" + "lbl" : "causally downstream of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002180", + "id" : "http://purl.obolibrary.org/obo/RO_0002405", "meta" : { - "definition" : { - "val" : "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://ontologydesignpatterns.org/wiki/Submissions:Componency" + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, "type" : "PROPERTY", - "lbl" : "has component" + "lbl" : "immediately causally downstream of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002584", + "id" : "http://purl.obolibrary.org/obo/GO_0016301", + "type" : "CLASS", + "lbl" : "kinase activity" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", + "type" : "PROPERTY", + "lbl" : "in_subset" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000004", "meta" : { "definition" : { - "val" : "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p", + "val" : "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.", "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - } ] + } }, - "type" : "PROPERTY", - "lbl" : "has part structure that is capable of" + "type" : "CLASS", + "lbl" : "independent continuant" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002222", + "id" : "http://purl.obolibrary.org/obo/BFO_0000006", + "type" : "CLASS", + "lbl" : "spatial region" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002086", "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/terms/source", - "val" : "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "val" : "X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)" } ] }, "type" : "PROPERTY", - "lbl" : "temporally related to" + "lbl" : "ends after" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002464", + "id" : "http://purl.obolibrary.org/obo/RO_0002087", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "starts_at_end_of" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" } ] }, "type" : "PROPERTY", - "lbl" : "helper property (not for use in curation)" + "lbl" : "immediately preceded by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002581", + "id" : "http://purl.obolibrary.org/obo/PATO_0000051", + "type" : "CLASS", + "lbl" : "morphology" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000052", + "type" : "CLASS", + "lbl" : "shape" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym", + "type" : "PROPERTY", + "lbl" : "has_broad_synonym" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000002", "meta" : { "definition" : { - "val" : "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL", + "val" : "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.", "xrefs" : [ ] } }, - "type" : "PROPERTY", - "lbl" : "is a defining property chain axiom" + "type" : "CLASS", + "lbl" : "continuant" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002582", + "id" : "http://purl.obolibrary.org/obo/BFO_0000003", "meta" : { "definition" : { - "val" : "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.", + "val" : "An entity that has temporal parts and that happens, unfolds or develops through time.", "xrefs" : [ ] } }, + "type" : "CLASS", + "lbl" : "occurrent" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym", "type" : "PROPERTY", - "lbl" : "is a defining property chain axiom where second argument is reflexive" + "lbl" : "has_exact_synonym" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002217", + "id" : "http://purl.obolibrary.org/obo/GO_0005634", "meta" : { - "definition" : { - "val" : "x actively participates in y if and only if x participates in y and x realizes some active role", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "agent in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" } ] }, + "type" : "CLASS", + "lbl" : "nucleus" + }, { + "id" : "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", "type" : "PROPERTY", - "lbl" : "actively participates in" + "lbl" : "eco subset" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002218", + "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref", + "type" : "PROPERTY", + "lbl" : "database_cross_reference" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002630", "meta" : { "definition" : { - "val" : "x has participant y if and only if x realizes some active role that inheres in y", + "val" : "Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "'heart development' has active participant some Shh protein" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "This may be obsoleted and replaced by the original 'has agent' relation" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly negatively regulates (process to process)" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has agent" + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002578" } ] }, "type" : "PROPERTY", - "lbl" : "obsolete has active participant" + "lbl" : "directly negatively regulates" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002334", + "id" : "http://purl.obolibrary.org/obo/PATO_0002009", + "type" : "CLASS", + "lbl" : "branchiness" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002506", "meta" : { - "definition" : { - "val" : "inverse of regulates", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "regulated by (processual)" } ] }, "type" : "PROPERTY", - "lbl" : "regulated by" + "lbl" : "causal relation between material entities" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002213", + "id" : "http://purl.obolibrary.org/obo/PATO_0002124", + "type" : "CLASS", + "lbl" : "laminar" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002500", "meta" : { "definition" : { - "val" : "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", + "val" : "A relationship between a material entity and a process where the material entity has some causal role that influences the process", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002211" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "positively regulates (process to process)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, "type" : "PROPERTY", - "lbl" : "positively regulates" + "lbl" : "causal agent in process" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002335", + "id" : "http://purl.obolibrary.org/obo/RO_0002501", "meta" : { "definition" : { - "val" : "inverse of negatively regulates", + "val" : "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." } ] }, "type" : "PROPERTY", - "lbl" : "negatively regulated by" + "lbl" : "causal relation between processes" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0042995", + "id" : "http://purl.obolibrary.org/obo/RO_0002502", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/go.owl" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/BFO_0000169" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, + "type" : "PROPERTY", + "lbl" : "depends on" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_01000254", "type" : "CLASS", - "lbl" : "cell projection" + "lbl" : "environmental system" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002578", + "id" : "http://purl.obolibrary.org/obo/RO_0002507", "meta" : { "definition" : { - "val" : "Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.", + "val" : "s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s.", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/24330602" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "determined by (system to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A coral reef environment is determined by a particular coral reef" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002575", - "val" : "http://purl.obolibrary.org/obo/RO_0002211" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://purl.org/dc/terms/creator", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "directly regulates (processual)" + "pred" : "http://purl.org/dc/terms/creator", + "val" : "Pier Buttigieg" } ] }, "type" : "PROPERTY", - "lbl" : "directly regulates" + "lbl" : "determined by" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002215", + "id" : "http://purl.obolibrary.org/obo/RO_0002629", "meta" : { "definition" : { - "val" : "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. ", + "val" : "Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has function realized in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://www.ncbi.nlm.nih.gov/pubmed/21208450" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20123131" + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "osteoclast SubClassOf 'capable of' some 'bone resorption'" + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002578" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", - "val" : "RO_0000053 some (RO_0000054 only ?Y)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly positively regulates (process to process)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly positively regulates" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002508", + "meta" : { + "definition" : { + "val" : "inverse of determined by", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259", "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "determines (material entity to system)" } ] }, "type" : "PROPERTY", - "lbl" : "capable of" + "lbl" : "determines" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002336", + "id" : "http://purl.obolibrary.org/obo/RO_0002509", "meta" : { "definition" : { - "val" : "inverse of positively regulates", + "val" : "s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "positively regulated by" + "lbl" : "determined by part of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002216", + "id" : "http://purl.obolibrary.org/obo/BFO_0000031", "meta" : { "definition" : { - "val" : "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.", + "val" : "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "generically dependent continuant" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002180", + "meta" : { + "definition" : { + "val" : "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", - "val" : "RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has function in" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:Componency" } ] }, "type" : "PROPERTY", - "lbl" : "capable of part of" + "lbl" : "has component" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0001010", + "id" : "http://purl.obolibrary.org/obo/GO_0050896", "type" : "CLASS", - "lbl" : "organism or virus or viroid" + "lbl" : "response to stimulus" }, { "id" : "http://purl.obolibrary.org/obo/IAO_0000589", "meta" : { @@ -2607,8 +3244,20 @@ }, "type" : "CLASS", "lbl" : "specifically dependent continuant" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000141", + "type" : "CLASS", + "lbl" : "immaterial entity" } ], "edges" : [ { + "sub" : "http://purl.obolibrary.org/obo/GO_0016020", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CARO_0000014" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002509", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002506" + }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002202", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002203" @@ -2644,10 +3293,18 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0042995", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0044464" + }, { + "sub" : "http://purl.obolibrary.org/obo/ENVO_01000254", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/RO_0002577" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002131", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002323" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002353", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000066", "pred" : "inverseOf", @@ -2656,10 +3313,18 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002501", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002410" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002507", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002509" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002264" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002297", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002234" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002578", "pred" : "subPropertyOf", @@ -2688,14 +3353,18 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0000056", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000057" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002630", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002212" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002331", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002217" }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002630", + "sub" : "http://purl.obolibrary.org/obo/RO_0002509", "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002212" + "obj" : "http://purl.obolibrary.org/obo/RO_0002131" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002427", "pred" : "subPropertyOf", @@ -2741,13 +3410,17 @@ "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002436" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000040", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000006", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002211", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002411" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000040", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002087", "pred" : "inverseOf", @@ -2804,6 +3477,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004035", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002263" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002353", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000056" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002584", "pred" : "subPropertyOf", @@ -2812,6 +3489,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002216", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002500" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000141", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002254", "pred" : "inverseOf", @@ -2820,18 +3501,34 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0000052", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000053" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002507", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002418", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002427" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002234", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002212", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002350", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002351" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002473", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0050896", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004047", "pred" : "subPropertyOf", @@ -2844,10 +3541,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002216", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002024", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002022" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", "pred" : "subPropertyOf", @@ -2856,6 +3549,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002014", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002013" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002024", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002022" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002387", "pred" : "subPropertyOf", @@ -2868,14 +3565,14 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002131" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002304", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0004047" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002304", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0004047" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002335", "pred" : "subPropertyOf", @@ -2884,14 +3581,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002405", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002412" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002629", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002213" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002255", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002286" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002629", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002213" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0003824", "pred" : "is_a", @@ -2924,6 +3621,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002430", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002428" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002379", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002131" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002305", "pred" : "subPropertyOf", @@ -2936,6 +3637,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002327", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002215" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0000080", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000086" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002351", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002559", "pred" : "inverseOf", @@ -2952,6 +3661,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002203", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002387" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002295", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002324" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002264", "pred" : "subPropertyOf", @@ -3020,6 +3733,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002432", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002131" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002577", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000040" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002429", "pred" : "subPropertyOf", @@ -3028,6 +3745,10 @@ "sub" : "http://purl.obolibrary.org/obo/CARO_0000003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/CARO_0000006" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002507", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002508" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002211", "pred" : "inverseOf", @@ -3044,6 +3765,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002023", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002630" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0001015", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0001025" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0030000", "pred" : "is_a", @@ -3060,6 +3785,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002022", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002334" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0003000", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0003001" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002448", "pred" : "subPropertyOf", @@ -3080,6 +3813,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002630", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002578" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002234", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002353" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002598", "pred" : "subPropertyOf", @@ -3100,14 +3837,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002254", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002258" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0016772", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0016740" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002352", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000056" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0016772", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0016740" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000051", "pred" : "is_a", @@ -3152,10 +3889,22 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002090", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000063" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002297", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002295" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002023", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002022" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002354", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002353" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002258", "pred" : "inverseOf", @@ -3172,18 +3921,22 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002608", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002410" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002432", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002017", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002018" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002432", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002388", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002387" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002326", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002329" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002215", "pred" : "subPropertyOf", @@ -3192,6 +3945,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002255", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002385" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002297", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002354" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0000006", "pred" : "is_a", @@ -3224,6 +3981,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002202", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002258" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0000086", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000053" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002508", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002566" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000051", "pred" : "subPropertyOf", @@ -3232,6 +3997,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002500", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002608" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002326", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002216" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002336", "pred" : "subPropertyOf", @@ -3260,6 +4029,10 @@ "sub" : "http://purl.obolibrary.org/obo/CARO_0000006", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/CARO_0000000" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002350", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002596", "pred" : "subPropertyOf", @@ -3280,6 +4053,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002019", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002233" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0001018", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0001019" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0000080", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002217", "pred" : "subPropertyOf", @@ -3292,6 +4073,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002481", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002564" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002507", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002559" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002428", "pred" : "subPropertyOf", @@ -3322,7 +4107,7 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ ], - "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29/imports/ro_import.owl" + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-31/imports/ro_import.owl" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ ], @@ -3334,6 +4119,10 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002595", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0003001", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", "domainClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ], @@ -3346,27 +4135,32 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002211", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002222", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0000056", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002384", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ] + "predicateId" : "http://purl.obolibrary.org/obo/RO_0003000", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002295", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000003" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0000053", "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000020" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002019", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/GO_0004872" ] + "predicateId" : "http://purl.obolibrary.org/obo/RO_0001018", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000050", "allValuesFromEdges" : [ { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" @@ -3374,6 +4168,10 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -3383,24 +4181,54 @@ "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000031" } ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002506", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002501", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002507", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/RO_0002577" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002509", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/RO_0002577" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002222", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0000086", + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000019" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002384", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002019", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/GO_0004872" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002334", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", + "predicateId" : "http://purl.obolibrary.org/obo/RO_0001025", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] }, { @@ -3419,10 +4247,6 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002479", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002501", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002018", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], @@ -3443,12 +4267,12 @@ "propertyChainAxioms" : [ { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000050" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002329", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002215" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000066", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002329", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002215" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0004035", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002305" ] @@ -3566,6 +4390,12 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002450", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002629", "http://purl.obolibrary.org/obo/RO_0002333" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0001018", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0001025", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002509", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002507", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002314", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002314", "http://purl.obolibrary.org/obo/BFO_0000050" ] diff --git a/src/ontology/imports/ro_import.obo b/src/ontology/imports/ro_import.obo index 5fc7cd09..92d7fbe3 100644 --- a/src/ontology/imports/ro_import.obo +++ b/src/ontology/imports/ro_import.obo @@ -1,9 +1,9 @@ format-version: 1.2 -data-version: pato/releases/2019-10-29/imports/ro_import.owl +data-version: pato/releases/2019-10-31/imports/ro_import.owl subsetdef: ro-eco "" subsetdef: RO:0002259 "" ontology: pato/imports/ro_import -owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(AnnotationProperty())\n\n\n\n############################\n# Classes\n############################\n\n# Class: (continuant)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (occurrent)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (kinase activity)\n\nSubClassOf( ObjectHasSelf())\n\n\nSubClassOf(ObjectSomeValuesFrom( ) ObjectUnionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))))\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z\"^^xsd:string) Annotation(rdfs:label \"infer input from direct reg\"^^xsd:string) Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z),\ne.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'\") Annotation(rdfs:label \"enabling an MF enables its parts\") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'\"^^xsd:string) Annotation(rdfs:label \"involved in BP\"^^xsd:string) Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From ligand activity to has_ligand\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to \\\"... -> overlaps\\\"\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.\") Annotation(rdfs:label \"inferring direct reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct neg reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct positive reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From has_ligand to ligand activity\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"effector input is compound function input\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"Input of effector is input of its parent MF\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly regulates X, its parent MF directly regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly positively regulates X, its parent MF directly positively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"if effector directly negatively regulates X, its parent MF directly negatively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nAnnotationAssertion(rdfs:comment \"\")\n) +owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(AnnotationProperty())\n\n############################\n# Object Properties\n############################\n\n# Object Property: (located in)\n\nObjectPropertyRange( ObjectIntersectionOf( ObjectComplementOf()))\n\n# Object Property: (has member)\n\nIrreflexiveObjectProperty()\n\n\n\n############################\n# Classes\n############################\n\n# Class: (continuant)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (occurrent)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (material entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (immaterial entity)\n\nDisjointClasses( ObjectSomeValuesFrom( ))\n\n# Class: (kinase activity)\n\nSubClassOf( ObjectHasSelf())\n\n\nSubClassOf(ObjectSomeValuesFrom( ) ObjectUnionOf(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ObjectSomeValuesFrom( ObjectSomeValuesFrom( )))))\nSubObjectPropertyOf(ObjectPropertyChain( ObjectInverseOf()) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain( ) )\nSubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf() ) )\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z\"^^xsd:string) Annotation(rdfs:label \"infer input from direct reg\"^^xsd:string) Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z),\ne.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'\") Annotation(rdfs:label \"enabling an MF enables its parts\") Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation( \"true\"^^xsd:boolean) Annotation(rdfs:comment \"GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'\"^^xsd:string) Annotation(rdfs:label \"involved in BP\"^^xsd:string) Body(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From ligand activity to has_ligand\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ClassAtom( Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to \\\"... -> overlaps\\\"\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.\") Annotation(rdfs:label \"inferring direct reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct neg reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"inferring direct positive reg edge from input to regulatory subfunction\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"From has_ligand to ligand activity\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom( Variable()) ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"effector input is compound function input\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"Input of effector is input of its parent MF\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly regulates X, its parent MF directly regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:comment \"if effector directly positively regulates X, its parent MF directly positively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"if effector directly negatively regulates X, its parent MF directly negatively regulates X\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Annotation(rdfs:label \"'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).\") Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ClassAtom(owl:Nothing Variable()) ClassAtom(owl:Nothing Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nDLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable())))\nAnnotationAssertion(rdfs:comment \"\")\n) [Term] id: BFO:0000002 @@ -24,14 +24,28 @@ name: independent continuant def: "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything." [] is_a: BFO:0000002 ! continuant disjoint_from: BFO:0000020 ! specifically dependent continuant +disjoint_from: BFO:0000031 ! generically dependent continuant relationship: BFO:0000050 BFO:0000004 ! part of independent continuant +[Term] +id: BFO:0000006 +name: spatial region +is_a: BFO:0000141 ! immaterial entity + [Term] id: BFO:0000015 name: process def: "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." [] is_a: BFO:0000003 ! occurrent +[Term] +id: BFO:0000017 +name: realizable entity +def: "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances." [] +is_a: BFO:0000020 ! specifically dependent continuant +disjoint_from: BFO:0000019 ! quality +relationship: BFO:0000050 BFO:0000017 ! part of realizable entity + [Term] id: BFO:0000019 name: quality @@ -43,13 +57,27 @@ id: BFO:0000020 name: specifically dependent continuant def: "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same." [] is_a: BFO:0000002 ! continuant +disjoint_from: BFO:0000031 ! generically dependent continuant relationship: BFO:0000050 BFO:0000020 ! part of specifically dependent continuant +[Term] +id: BFO:0000031 +name: generically dependent continuant +def: "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time." [] +is_a: BFO:0000002 ! continuant +relationship: BFO:0000050 BFO:0000031 ! part of generically dependent continuant + [Term] id: BFO:0000040 name: material entity def: "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time." [] is_a: BFO:0000004 ! independent continuant +disjoint_from: BFO:0000141 ! immaterial entity + +[Term] +id: BFO:0000141 +name: immaterial entity +is_a: BFO:0000004 ! independent continuant [Term] id: CARO:0000000 @@ -93,6 +121,11 @@ name: cell is_a: CARO:0000003 ! connected anatomical structure property_value: IAO:0000412 http://purl.obolibrary.org/obo/cl.owl +[Term] +id: ENVO:01000254 +name: environmental system +is_a: RO:0002577 ! system + [Term] id: GO:0003674 name: molecular_function @@ -115,6 +148,12 @@ id: GO:0008150 name: biological_process is_a: BFO:0000015 ! process +[Term] +id: GO:0016020 +name: membrane +is_a: CARO:0000014 ! cell part +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl + [Term] id: GO:0016301 name: kinase activity @@ -142,6 +181,11 @@ name: cell part is_a: CARO:0000014 ! cell part property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl +[Term] +id: GO:0050896 +name: response to stimulus +is_a: GO:0008150 ! biological_process + [Term] id: PATO:0000001 name: quality @@ -189,6 +233,15 @@ id: PATO:0002124 name: laminar is_a: PATO:0000141 ! structure +[Term] +id: RO:0002577 +name: system +def: "A material entity consisting of multiple components that are causally integrated." [] +is_a: BFO:0000040 ! material entity +property_value: IAO:0000116 "May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.jbiomedsem.com/content/4/1/43 xsd:string + [Typedef] id: BFO:0000050 name: part of @@ -339,6 +392,78 @@ domain: BFO:0000003 ! occurrent range: BFO:0000002 ! continuant holds_over_chain: BFO:0000051 RO:0000057 +[Typedef] +id: RO:0000080 +name: quality of +def: "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence" [] +property_value: IAO:0000112 "this red color is a quality of this apple" xsd:string +property_value: IAO:0000116 "A quality inheres in its bearer at all times for which the quality exists." xsd:string +property_value: IAO:0000118 "is quality of" xsd:string +property_value: IAO:0000118 "quality_of" xsd:string +is_a: RO:0000052 ! inheres in +inverse_of: RO:0000086 ! has quality + +[Typedef] +id: RO:0000086 +name: has quality +def: "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence" [] +property_value: IAO:0000112 "this apple has quality this red color" xsd:string +property_value: IAO:0000116 "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." xsd:string +property_value: IAO:0000118 "has_quality" xsd:string +range: BFO:0000019 ! quality +is_a: RO:0000053 ! bearer of + +[Typedef] +id: RO:0001015 +name: location of +def: "a relation between two independent continuants, the location and the target, in which the target is entirely within the location" [] +property_value: IAO:0000111 "is location of" xsd:string +property_value: IAO:0000112 "my head is the location of my brain" xsd:string +property_value: IAO:0000112 "this cage is the location of this rat" xsd:string +property_value: IAO:0000116 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000118 "location_of" xsd:string +property_value: RO:0001900 RO:0001901 +is_transitive: true +inverse_of: RO:0001025 ! located in + +[Typedef] +id: RO:0001018 +name: contained in +subset: ro-eco +property_value: IAO:0000111 "contained in" xsd:string +property_value: IAO:0000116 "Containment is location not involving parthood, and arises only where some immaterial continuant is involved." xsd:string +property_value: IAO:0000116 "Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):" xsd:string +property_value: IAO:0000116 "Intended meaning:\ndomain: material entity\nrange: spatial region or site (immaterial continuant)\n " xsd:string +property_value: IAO:0000118 "contained_in" xsd:string +property_value: RO:0001900 RO:0001901 +domain: BFO:0000040 ! material entity +range: BFO:0000004 ! independent continuant +holds_over_chain: RO:0001025 BFO:0000050 +inverse_of: RO:0001019 ! contains + +[Typedef] +id: RO:0001019 +name: contains +subset: ro-eco +property_value: IAO:0000111 "contains" xsd:string +property_value: RO:0001900 RO:0001901 + +[Typedef] +id: RO:0001025 +name: located in +def: "a relation between two independent continuants, the target and the location, in which the target is entirely within the location" [] +property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:located_in xsd:string +property_value: IAO:0000111 "located in" xsd:string +property_value: IAO:0000112 "my brain is located in my head" xsd:string +property_value: IAO:0000112 "this rat is located in this cage" xsd:string +property_value: IAO:0000116 "Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus" xsd:string +property_value: IAO:0000116 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: IAO:0000118 "located_in" xsd:string +property_value: RO:0001900 RO:0001901 +domain: BFO:0000004 {http://purl.obolibrary.org/obo/IAO_0000116="This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation."} ! independent continuant +range: BFO:0000004 {http://purl.obolibrary.org/obo/IAO_0000116="This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation."} ! independent continuant +is_transitive: true + [Typedef] id: RO:0002013 name: has regulatory component activity @@ -642,6 +767,17 @@ range: BFO:0000040 ! material entity is_a: RO:0000057 ! has participant inverse_of: RO:0002352 ! input of +[Typedef] +id: RO:0002234 +name: has output +def: "p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "produces" xsd:string +is_a: RO:0000057 ! has participant +inverse_of: RO:0002353 ! output of + [Typedef] id: RO:0002254 name: has developmental contribution from @@ -753,6 +889,19 @@ def: "A relationship that holds between entities participating in some developme property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" xsd:string +[Typedef] +id: RO:0002326 +name: contributes to +property_value: IAO:0000112 "ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity." xsd:string +property_value: IAO:0000112 "eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to \"ribosome binding\". And all three are part_of an eIF2 complex" xsd:string +property_value: IAO:0000112 "Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity." xsd:string +property_value: IAO:0000116 "We would like to say\n\nif and only if\n exists c', p'\n c part_of c' and c' capable_of p\n and\n c capable_of p' and p' part_of p\nthen\n c contributes_to p\n\nHowever, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to xsd:string +property_value: IAO:0000232 "In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. " xsd:string +is_a: RO:0002216 ! capable of part of +is_a: RO:0002329 ! part of structure that is capable of + [Typedef] id: RO:0002327 name: enables @@ -835,6 +984,26 @@ subset: RO:0002259 property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: RO:0002334 ! regulated by +[Typedef] +id: RO:0002350 +name: member of +def: "is member of is a mereological relation between a item and a collection." [] +property_value: IAO:0000112 "An organism that is a member of a population of organisms" xsd:string +property_value: IAO:0000118 "is member of" xsd:string +property_value: IAO:0000118 "member part of" xsd:string +property_value: IAO:0000119 "SIO" xsd:string +property_value: RO:0001900 RO:0001901 +is_a: BFO:0000050 ! part of +inverse_of: RO:0002351 ! has member + +[Typedef] +id: RO:0002351 +name: has member +def: "has member is a mereological relation between a collection and an item." [] +property_value: IAO:0000119 "SIO" xsd:string +property_value: RO:0001900 RO:0001901 +is_a: BFO:0000051 ! has part + [Typedef] id: RO:0002352 name: input of @@ -845,6 +1014,31 @@ property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: RO:0000056 ! participates in is_a: RO:0002328 ! functionally related to +[Typedef] +id: RO:0002353 +name: output of +def: "inverse of has output" [] +subset: ro-eco +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0000056 ! participates in +is_a: RO:0002328 ! functionally related to + +[Typedef] +id: RO:0002354 +name: formed as result of +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002353 ! output of + +[Typedef] +id: RO:0002379 +name: spatially coextensive with +def: "x spatially_coextensive_with y if and inly if x and y have the same location" [] +property_value: IAO:0000112 "A lump of clay and a statue" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000232 "This relation is added for formal completeness. It is unlikely to be used in many practical scenarios" xsd:string +is_a: RO:0002131 ! overlaps + [Typedef] id: RO:0002384 name: has developmental potential involving @@ -1136,6 +1330,47 @@ domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_a: RO:0002410 ! causally related to +[Typedef] +id: RO:0002507 +name: determined by +def: "s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s." [] +subset: ro-eco +property_value: http://purl.org/dc/terms/creator "Chris Mungall" xsd:string +property_value: http://purl.org/dc/terms/creator "Pier Buttigieg" xsd:string +property_value: IAO:0000112 "A coral reef environment is determined by a particular coral reef" xsd:string +property_value: IAO:0000116 "The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/24330602 +property_value: IAO:0000589 "determined by (system to material entity)" xsd:string +domain: RO:0002577 ! system +range: BFO:0000040 ! material entity +is_a: BFO:0000050 ! part of +is_a: RO:0002509 ! determined by part of +is_a: RO:0002559 ! causally influenced by +inverse_of: RO:0002508 ! determines + +[Typedef] +id: RO:0002508 +name: determines +def: "inverse of determined by" [] +subset: ro-eco +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000589 "determines (material entity to system)" xsd:string +is_a: RO:0002566 ! causally influences + +[Typedef] +id: RO:0002509 +name: determined by part of +def: "s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w." [] +subset: ro-eco +property_value: IAO:0000117 "Chris Mungall" xsd:string +domain: RO:0002577 ! system +range: BFO:0000040 ! material entity +holds_over_chain: RO:0002507 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} +is_a: RO:0002131 ! overlaps +is_a: RO:0002506 ! causal relation between material entities + [Typedef] id: RO:0002559 name: causally influenced by @@ -1233,6 +1468,13 @@ def: "Inverse of 'causal agent in process'" [] property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations is_a: RO:0002410 ! causally related to +[Typedef] +id: RO:0002609 +name: obsolete related via dependence to +def: "A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes." [] +property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +is_obsolete: true + [Typedef] id: RO:0002629 name: directly positively regulates @@ -1253,6 +1495,28 @@ property_value: RO:0004050 RO:0002578 is_a: RO:0002212 ! negatively regulates is_a: RO:0002578 ! directly regulates +[Typedef] +id: RO:0003000 +name: produces +def: "a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix." [] +comment: Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue. +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Melissa Haendel" xsd:string +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity +inverse_of: RO:0003001 ! produced by + +[Typedef] +id: RO:0003001 +name: produced by +def: "a produced_by b iff some process that occurs_in b has_output a." [] +subset: ro-eco +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Melissa Haendel" xsd:string +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity + [Typedef] id: RO:0004031 name: enables subfunction @@ -1321,3 +1585,27 @@ is_a: RO:0002418 ! causally upstream of or within created_by: cjm creation_date: 2018-03-13T23:55:19Z +[Typedef] +id: results_in_developmental_progression_of +name: results in developmental progression of +def: "p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss)." [] +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: seeAlso Ontology:extensions +domain: GO:0008150 ! biological_process +range: CARO:0000003 ! connected anatomical structure +is_a: RO:0002324 ! developmentally related to + +[Typedef] +id: results_in_formation_of +name: results in formation of +property_value: IAO:0000112 "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists." xsd:string +property_value: IAO:0000112 "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 GOC:mtg_berkeley_2013 xsd:string +is_a: results_in_developmental_progression_of ! results in developmental progression of +is_a: RO:0002234 ! has output +inverse_of: RO:0002354 ! formed as result of + diff --git a/src/ontology/imports/ro_import.owl b/src/ontology/imports/ro_import.owl index 185b8ed3..3c6b5367 100644 --- a/src/ontology/imports/ro_import.owl +++ b/src/ontology/imports/ro_import.owl @@ -16,7 +16,7 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -105,7 +105,10 @@ - + + + curator note + @@ -120,7 +123,9 @@ - + + expand expression to + @@ -135,7 +140,9 @@ - + + elucidation + @@ -152,14 +159,34 @@ + defined by inverse + + + + + + - + + relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y + The general property hierarchy is: + + "directly P" SubPropertyOf "P" + Transitive(P) + +Where we have an annotation assertion + + "directly P" "is direct form of" "P" + If we have the annotation P is-direct-form-of Q, and we have inverses P' and Q', then it follows that P' is-direct-form-of Q' + Chris Mungall + is direct form of + @@ -194,25 +221,42 @@ - + + cjm + 2018-03-14T00:03:16Z + is positive form of + - + + cjm + 2018-03-14T00:03:24Z + is negative form of + - + + part-of is homeomorphic for independent continuants. + R is homemorphic for C iff (1) there exists some x,y such that x R y, and x and y instantiate C and (2) for all x, if x is an instance of C, and there exists some y some such that x R y, then it follows that y is an instance of C. + cjm + 2018-10-21T19:46:34Z + R homeomorphic-for C expands to: C SubClassOf R only C. Additionally, for any class D that is disjoint with C, we can also expand to C DisjointWith R some D, D DisjointWith R some C. + is homeomorphic for + + + eco subset @@ -568,6 +612,140 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + this red color is a quality of this apple + a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence + A quality inheres in its bearer at all times for which the quality exists. + is quality of + quality_of + quality of + + + + + + + + + + this apple has quality this red color + a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence + A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist. + has_quality + has quality + + + + + + + + + + is location of + my head is the location of my brain + this cage is the location of this rat + a relation between two independent continuants, the location and the target, in which the target is entirely within the location + Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + location_of + + location of + + + + + + + + + + + + + + + contained in + Containment is location not involving parthood, and arises only where some immaterial continuant is involved. + Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition): + Intended meaning: +domain: material entity +range: spatial region or site (immaterial continuant) + + contained_in + + + contained in + + + + + + + + contains + + + contains + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + located in + my brain is located in my head + this rat is located in this cage + a relation between two independent continuants, the target and the location, in which the target is entirely within the location + Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus + Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + located_in + + http://www.obofoundry.org/ro/#OBO_REL:located_in + located in + + + + + + This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation. + + + + + + This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation. + + + + @@ -1038,6 +1216,21 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + + p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p. + Chris Mungall + produces + + has output + + + + @@ -1139,6 +1332,40 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + + + p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss). + This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint. + Chris Mungall + results_in_developmental_progression_of + results in developmental progression of + + + + + + + + + + + + an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists. + every "endocardial cushion formation" (GO:0003272) results_in_formation_of some "endocardial cushion" (UBERON:0002062) + + Chris Mungall + GOC:mtg_berkeley_2013 + results_in_formation_of + results in formation of + + + + @@ -1220,6 +1447,33 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity. + Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity. + eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to "ribosome binding". And all three are part_of an eIF2 complex + We would like to say + +if and only if + exists c', p' + c part_of c' and c' capable_of p + and + c capable_of p' and p' part_of p +then + c contributes_to p + +However, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction. + Chris Mungall + http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to + In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. + contributes to + + + + @@ -1358,6 +1612,35 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + An organism that is a member of a population of organisms + is member of is a mereological relation between a item and a collection. + is member of + member part of + SIO + + member of + + + + + + + + + + has member is a mereological relation between a collection and an item. + SIO + + has member + + + + @@ -1372,6 +1655,49 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + inverse of has output + Chris Mungall + + + output of + + + + + + + + + Chris Mungall + formed as result of + + + + + + + + + + + + + + + A lump of clay and a statue + x spatially_coextensive_with y if and inly if x and y have the same location + Chris Mungall + This relation is added for formal completeness. It is unlikely to be used in many practical scenarios + spatially coextensive with + + + + @@ -1862,6 +2188,71 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + + + + + A coral reef environment is determined by a particular coral reef + s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s. + The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future + Chris Mungall + + determined by (system to material entity) + Chris Mungall + Pier Buttigieg + + determined by + + + + + + + + + inverse of determined by + Chris Mungall + determines (material entity to system) + + + determines + + + + + + + + + + + + + + + + s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w. + Chris Mungall + + determined by part of + + + + + + + + + true + + + + @@ -2025,6 +2416,17 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + obsolete related via dependence to + true + + + + @@ -2053,6 +2455,42 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + + + + + + + + + a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix. + Melissa Haendel + + Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue. + produces + + + + + + + + + + + a produced_by b iff some process that occurs_in b has_output a. + Melissa Haendel + + produced by + + + + @@ -2229,12 +2667,22 @@ Each of these 3 primitives can be composed to yield a cross-product of different + A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything. independent continuant + + + + + spatial region + + + + @@ -2245,6 +2693,23 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + + + + + + + A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances. + realizable entity + + + + @@ -2270,22 +2735,61 @@ Each of these 3 primitives can be composed to yield a cross-product of different + A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same. specifically dependent continuant + + + + + + + + + + + A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time. + generically dependent continuant + + + + + + + + + + + An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. material entity + + + + + + + + + + + immaterial entity + + + + @@ -2356,6 +2860,15 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + environmental system + + + + @@ -2400,6 +2913,16 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + membrane + + + + @@ -2459,6 +2982,15 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + response to stimulus + + + + @@ -2542,6 +3074,19 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + A material entity consisting of multiple components that are causally integrated. + May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43 + Chris Mungall + http://www.jbiomedsem.com/content/4/1/43 + system + + + + + + + + ready for release + + + + @@ -2562,6 +3116,15 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + requires discussion + + + + diff --git a/src/ontology/imports/uberon_import.json b/src/ontology/imports/uberon_import.json index d7c8c73f..28ac1563 100644 --- a/src/ontology/imports/uberon_import.json +++ b/src/ontology/imports/uberon_import.json @@ -1,49 +1,57 @@ { "graphs" : [ { "nodes" : [ { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym", + "id" : "http://xmlns.com/foaf/0.1/page", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "foaf-page" + } ] + }, "type" : "PROPERTY", - "lbl" : "has_exact_synonym" + "lbl" : "page" }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref", + "id" : "http://www.geneontology.org/formats/oboInOwl#hasSynonymType", "type" : "PROPERTY", - "lbl" : "database_cross_reference" + "lbl" : "has_synonym_type" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002473", + "id" : "http://purl.obolibrary.org/obo/RO_0002254", "meta" : { - "definition" : { - "val" : "x composed_primarily_of y iff: more than half of the mass of x is made from parts of y", - "xrefs" : [ ] - }, "xrefs" : [ { - "val" : "RO:0002473" + "val" : "RO:0002254" } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_developmental_contribution_from" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "composed_primarily_of" } ] }, "type" : "PROPERTY", - "lbl" : "composed primarily of" + "lbl" : "has developmental contribution from" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002352", + "id" : "http://purl.obolibrary.org/obo/RO_0002255", "meta" : { "xrefs" : [ { - "val" : "RO:0002352" + "val" : "RO:0002255" } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "input_of" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "developmentally_contributes_to" } ] }, "type" : "PROPERTY", - "lbl" : "input of" + "lbl" : "developmentally_contributes_to" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002131", "meta" : { @@ -67,22 +75,6 @@ }, "type" : "PROPERTY", "lbl" : "overlaps" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000053", - "meta" : { - "xrefs" : [ { - "val" : "RO:0000053" - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "bearer_of" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "uberon" - } ] - }, - "type" : "PROPERTY", - "lbl" : "bearer of" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002328", "meta" : { @@ -115,10 +107,6 @@ }, "type" : "PROPERTY", "lbl" : "part of structure that is capable of" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "type" : "PROPERTY", - "lbl" : "shorthand" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000050", "meta" : { @@ -136,17 +124,41 @@ "type" : "PROPERTY", "lbl" : "part of" }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", + "id" : "http://purl.obolibrary.org/obo/RO_0002202", + "meta" : { + "xrefs" : [ { + "val" : "RO:0002202" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "develops_from" + } ] + }, "type" : "PROPERTY", - "lbl" : "in_subset" + "lbl" : "develops_from" }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "id" : "http://purl.obolibrary.org/obo/RO_0002203", + "meta" : { + "xrefs" : [ { + "val" : "RO:0002203" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "develops_into" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, "type" : "PROPERTY", - "lbl" : "has_obo_namespace" + "lbl" : "develops_into" }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", + "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", "type" : "PROPERTY", - "lbl" : "has_obo_format_version" + "lbl" : "in_subset" }, { "id" : "http://purl.obolibrary.org/obo/IAO_0000116", "meta" : { @@ -206,25 +218,24 @@ "type" : "PROPERTY", "lbl" : "example of usage" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002180", + "id" : "http://purl.obolibrary.org/obo/IAO_0000232", "meta" : { "xrefs" : [ { - "val" : "RO:0002180" + "val" : "IAO:0000232" } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "has_component" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "curator_notes" } ] }, "type" : "PROPERTY", - "lbl" : "has component" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0100001", - "type" : "PROPERTY", - "lbl" : "term replaced by" + "lbl" : "curator notes" }, { "id" : "http://www.geneontology.org/formats/oboInOwl#consider", "type" : "PROPERTY", @@ -272,22 +283,6 @@ }, "type" : "PROPERTY", "lbl" : "immediately_preceded_by" - }, { - "id" : "http://purl.org/dc/elements/1.1/creator", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "uberon" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "dc-creator" - } ] - }, - "type" : "PROPERTY", - "lbl" : "creator" }, { "id" : "http://purl.obolibrary.org/obo/UBERON_0001062", "meta" : { @@ -340,6 +335,381 @@ }, "type" : "CLASS", "lbl" : "anatomical entity" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001025", + "meta" : { + "xrefs" : [ { + "val" : "RO:0001025" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "located_in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "located_in" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", + "type" : "PROPERTY", + "lbl" : "has_related_synonym" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym", + "type" : "PROPERTY", + "lbl" : "has_broad_synonym" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym", + "type" : "PROPERTY", + "lbl" : "has_narrow_synonym" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym", + "type" : "PROPERTY", + "lbl" : "has_exact_synonym" + }, { + "id" : "http://purl.obolibrary.org/obo/uberon/core#upper_level", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "abstract upper-level terms not directly useful for analysis" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref", + "type" : "PROPERTY", + "lbl" : "database_cross_reference" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002473", + "meta" : { + "definition" : { + "val" : "x composed_primarily_of y iff: more than half of the mass of x is made from parts of y", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002473" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "composed_primarily_of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "composed primarily of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002352", + "meta" : { + "xrefs" : [ { + "val" : "RO:0002352" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "input_of" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, + "type" : "PROPERTY", + "lbl" : "input of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002353", + "meta" : { + "xrefs" : [ { + "val" : "RO:0002353" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "output_of" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, + "type" : "PROPERTY", + "lbl" : "output of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0003001", + "meta" : { + "xrefs" : [ { + "val" : "RO:0003001" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "produced_by" + } ] + }, + "type" : "PROPERTY", + "lbl" : "produced_by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002350", + "meta" : { + "xrefs" : [ { + "val" : "RO:0002350" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "member_of" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, + "type" : "PROPERTY", + "lbl" : "member of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0003000", + "meta" : { + "xrefs" : [ { + "val" : "RO:0003000" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "produces" + } ] + }, + "type" : "PROPERTY", + "lbl" : "produces" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002351", + "meta" : { + "xrefs" : [ { + "val" : "RO:0002351" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_member" + }, { + "pred" : 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"http://www.geneontology.org/formats/oboInOwl#shorthand", + "type" : "PROPERTY", + "lbl" : "shorthand" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001015", + "meta" : { + "xrefs" : [ { + "val" : "RO:0001015" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "location_of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "location_of" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "type" : "PROPERTY", + "lbl" : "has_obo_namespace" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", + "type" : "PROPERTY", + "lbl" : "has_obo_format_version" + }, { + "id" : "http://purl.obolibrary.org/obo/UBPROP_0000001", + "meta" : { + "definition" : { + "val" : "An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class.", + "xrefs" : [ "https://orcid.org/0000-0002-6601-2165" ] + }, + "xrefs" : [ { + "val" : "UBPROP:0000001" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This annotation property may be replaced with an annotation property from an external ontology such as IAO" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "external_definition" + } ] + }, + "type" : "PROPERTY", + "lbl" : "external_definition" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002180", + "meta" : { + "xrefs" : [ { + "val" : "RO:0002180" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_component" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has component" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0100001", + "type" : "PROPERTY", + "lbl" : "term replaced by" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002385", + "meta" : { + "definition" : { + "val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002385" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_potential_to_developmentally_contribute_to" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to developmentally contribute to" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002387", + "meta" : { + "definition" : { + "val" : "x has the potential to develop into y iff x develops into y or if x is capable of developing into y", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002387" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_potential_to_develop_into" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to develop into" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002388", + "meta" : { + "definition" : { + "val" : "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002388" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_potential_to_directly_develop_into" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has potential to directly develop into" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000086", + "meta" : { + "xrefs" : [ { + "val" : "RO:0000086" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has quality" + }, { + "id" : "http://purl.org/dc/elements/1.1/creator", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "dc-creator" + } ] + }, + "type" : "PROPERTY", + "lbl" : "creator" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002258", + "meta" : { + "xrefs" : [ { + "val" : "RO:0002258" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "developmentally_preceded_by" + } ] + }, + "type" : "PROPERTY", + "lbl" : "developmentally preceded by" }, { "id" : "http://purl.obolibrary.org/obo/RO_0002215", "meta" : { @@ -372,6 +742,10 @@ }, "type" : "PROPERTY", "lbl" : "capable of part of" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000424", + "type" : "PROPERTY", + "lbl" : "expand expression to" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000067", "meta" : { @@ -388,14 +762,6 @@ }, "type" : "PROPERTY", "lbl" : "contains process" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", - "type" : "PROPERTY", - "lbl" : "has_related_synonym" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym", - "type" : "PROPERTY", - "lbl" : "has_broad_synonym" }, { "id" : "http://purl.obolibrary.org/obo/BFO_0000062", "meta" : { @@ -425,10 +791,6 @@ }, "type" : "PROPERTY", "lbl" : "preceded_by" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym", - "type" : "PROPERTY", - "lbl" : "has_narrow_synonym" }, { "id" : "http://www.geneontology.org/formats/oboInOwl#SubsetProperty", "type" : "PROPERTY", @@ -471,9 +833,17 @@ "lbl" : "precedes" } ], "edges" : [ { + "sub" : "http://purl.obolibrary.org/obo/RO_0002202", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002203" + }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002215", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002350", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002351" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002473", "pred" : "subPropertyOf", @@ -490,6 +860,18 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002216", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002255", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002385" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002353", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0000086", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000053" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002180", "pred" : "subPropertyOf", @@ -498,6 +880,22 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002329", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002350", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002202", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002254" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002351", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002203", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002387" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", "pred" : "inverseOf", @@ -508,7 +906,7 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ ], - "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29/imports/uberon_import.owl" + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-31/imports/uberon_import.owl" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ ], @@ -516,6 +914,18 @@ "propertyChainAxioms" : [ { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002329", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002215" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002202" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002255", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002203", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002202", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002202" ] } ] } ] } \ No newline at end of file diff --git a/src/ontology/imports/uberon_import.obo b/src/ontology/imports/uberon_import.obo index 91b12953..cacf9f17 100644 --- a/src/ontology/imports/uberon_import.obo +++ b/src/ontology/imports/uberon_import.obo @@ -1,6 +1,6 @@ format-version: 1.2 -data-version: pato/releases/2019-10-29/imports/uberon_import.owl -subsetdef: upper_level "" +data-version: pato/releases/2019-10-31/imports/uberon_import.owl +subsetdef: upper_level "abstract upper-level terms not directly useful for analysis" ontology: pato/imports/uberon_import owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(AnnotationProperty())\n\n\nAnnotationAssertion( \"RO:0002473\")\n) @@ -58,12 +58,25 @@ def: "x composed_primarily_of y iff: more than half of the mass of x is made fro xref: RO:0002473 is_a: has_part ! has part +[Typedef] +id: contains +name: contains +namespace: uberon +xref: RO:0001019 + [Typedef] id: contains_process name: contains process namespace: uberon xref: BFO:0000067 +[Typedef] +id: curator_notes +name: curator notes +namespace: uberon +xref: IAO:0000232 +is_metadata_tag: true + [Typedef] id: dc-creator name: creator @@ -78,6 +91,38 @@ namespace: uberon xref: http://purl.org/dc/elements/1.1/source is_metadata_tag: true +[Typedef] +id: developmentally_contributes_to +name: developmentally_contributes_to +namespace: uberon +xref: RO:0002255 +holds_over_chain: develops_into part_of +is_a: has_potential_to_developmentally_contribute_to ! has potential to developmentally contribute to + +[Typedef] +id: developmentally_preceded_by +name: developmentally preceded by +namespace: uberon +xref: RO:0002258 + +[Typedef] +id: develops_from +name: develops_from +namespace: uberon +xref: RO:0002202 +holds_over_chain: part_of develops_from +is_transitive: true +is_a: has_developmental_contribution_from ! has developmental contribution from +inverse_of: develops_into ! develops_into +transitive_over: part_of ! part of + +[Typedef] +id: develops_into +name: develops_into +namespace: uberon +xref: RO:0002203 +is_a: has_potential_to_develop_into ! has potential to develop into + [Typedef] id: editor_note name: editor note @@ -92,6 +137,22 @@ namespace: uberon xref: IAO:0000112 is_metadata_tag: true +[Typedef] +id: external_definition +name: external_definition +namespace: uberon +def: "An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class." [https://orcid.org/0000-0002-6601-2165] +comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO +xref: UBPROP:0000001 +is_metadata_tag: true + +[Typedef] +id: foaf-page +name: page +namespace: uberon +xref: http://xmlns.com/foaf/0.1/page +is_metadata_tag: true + [Typedef] id: functionally_related_to name: functionally related to @@ -105,6 +166,21 @@ namespace: uberon xref: RO:0002180 is_a: has_part ! has part +[Typedef] +id: has_developmental_contribution_from +name: has developmental contribution from +namespace: uberon +xref: RO:0002254 +holds_over_chain: has_part develops_from +is_transitive: true + +[Typedef] +id: has_member +name: has member +namespace: uberon +xref: RO:0002351 +is_a: has_part ! has part + [Typedef] id: has_part name: has part @@ -112,6 +188,34 @@ namespace: uberon xref: BFO:0000051 is_transitive: true +[Typedef] +id: has_potential_to_develop_into +name: has potential to develop into +namespace: uberon +def: "x has the potential to develop into y iff x develops into y or if x is capable of developing into y" [] +xref: RO:0002387 + +[Typedef] +id: has_potential_to_developmentally_contribute_to +name: has potential to developmentally contribute to +namespace: uberon +def: "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y" [] +xref: RO:0002385 + +[Typedef] +id: has_potential_to_directly_develop_into +name: has potential to directly develop into +namespace: uberon +def: "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y" [] +xref: RO:0002388 + +[Typedef] +id: has_quality +name: has quality +namespace: uberon +xref: RO:0000086 +is_a: bearer_of ! bearer of + [Typedef] id: immediately_preceded_by name: immediately_preceded_by @@ -122,8 +226,8 @@ synonym: "is directly preceded by" EXACT [] synonym: "is immediately preceded by" EXACT [SIO:000251] synonym: "starts_at_end_of" EXACT [] xref: RO:0002087 +property_value: external_definition "A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]." xsd:string {source="SIO:000251"} property_value: seeAlso SIO:000251 -property_value: UBPROP:0000001 "A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]." xsd:string {source="SIO:000251"} is_a: preceded_by ! preceded_by [Typedef] @@ -133,6 +237,33 @@ namespace: uberon xref: RO:0002352 is_a: functionally_related_to ! functionally related to +[Typedef] +id: located_in +name: located_in +namespace: uberon +xref: RO:0001025 + +[Typedef] +id: location_of +name: location_of +namespace: uberon +xref: RO:0001015 + +[Typedef] +id: member_of +name: member of +namespace: uberon +xref: RO:0002350 +is_a: part_of ! part of +inverse_of: has_member ! has member + +[Typedef] +id: output_of +name: output of +namespace: uberon +xref: RO:0002353 +is_a: functionally_related_to ! functionally related to + [Typedef] id: overlaps name: overlaps @@ -174,3 +305,15 @@ namespace: uberon xref: BFO:0000063 is_transitive: true +[Typedef] +id: produced_by +name: produced_by +namespace: uberon +xref: RO:0003001 + +[Typedef] +id: produces +name: produces +namespace: uberon +xref: RO:0003000 + diff --git a/src/ontology/imports/uberon_import.owl b/src/ontology/imports/uberon_import.owl index 3276503c..dffe788b 100644 --- a/src/ontology/imports/uberon_import.owl +++ b/src/ontology/imports/uberon_import.owl @@ -8,10 +8,11 @@ xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:core="http://purl.obolibrary.org/obo/uberon/core#" + xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -67,9 +68,24 @@ + + + + IAO:0000232 + uberon + curator_notes + true + curator_notes + curator notes + + + + - + + expand expression to + @@ -83,13 +99,29 @@ - + + An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class. + UBPROP:0000001 + uberon + external_definition + true + external_definition + This annotation property may be replaced with an annotation property from an external ontology such as IAO + external_definition + + + + + An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class. + + + abstract upper-level terms not directly useful for analysis @@ -225,6 +257,14 @@ + + + + has_synonym_type + + + + @@ -289,6 +329,19 @@ + + + + + uberon + foaf-page + true + foaf-page + page + + + + + + + + RO:0000086 + uberon + has_quality + has_quality + has quality + + + + + + + + RO:0001015 + uberon + location_of + location_of + location_of + + + + + + + + RO:0001019 + uberon + contains + contains + contains + + + + + + + + RO:0001025 + uberon + located_in + located_in + located_in + + + + @@ -451,6 +553,42 @@ + + + + + + + + + + + + + + + RO:0002202 + uberon + develops_from + develops_from + develops_from + + + + + + + + + RO:0002203 + uberon + develops_into + develops_into + develops_into + + + + @@ -477,6 +615,52 @@ + + + + + + + + + RO:0002254 + uberon + has_developmental_contribution_from + has_developmental_contribution_from + has developmental contribution from + + + + + + + + + + + + + RO:0002255 + uberon + developmentally_contributes_to + developmentally_contributes_to + developmentally_contributes_to + + + + + + + + RO:0002258 + uberon + developmentally_preceded_by + developmentally_preceded_by + developmentally preceded by + + + + @@ -506,6 +690,33 @@ + + + + + + RO:0002350 + uberon + member_of + member_of + member of + + + + + + + + + RO:0002351 + uberon + has_member + has_member + has member + + + + @@ -519,6 +730,58 @@ + + + + + RO:0002353 + uberon + output_of + output_of + output of + + + + + + + + x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y + RO:0002385 + uberon + has_potential_to_developmentally_contribute_to + has_potential_to_developmentally_contribute_to + has potential to developmentally contribute to + + + + + + + + x has the potential to develop into y iff x develops into y or if x is capable of developing into y + RO:0002387 + uberon + has_potential_to_develop_into + has_potential_to_develop_into + has potential to develop into + + + + + + + + x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y + RO:0002388 + uberon + has_potential_to_directly_develop_into + has_potential_to_directly_develop_into + has potential to directly develop into + + + + @@ -534,6 +797,30 @@ + + + + RO:0003000 + uberon + produces + produces + produces + + + + + + + + RO:0003001 + uberon + produced_by + produced_by + produced_by + + + + - - - - - @@ -382,6 +376,30 @@ + + + + + + + + + + + + + + + + + + + + + + + + @@ -701,6 +719,54 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -34797,6 +34863,7 @@ Association is weaker than correlation or proportionality. These relations may b + A quality that inheres in an entire organism or part of an organism. quality PATO:0001995 @@ -48968,8 +49035,8 @@ height'). An oriented quality inhering in a bearer by virtue of the bearer's being abnormally placed or arranged. - 2018-05-21T22:44:38Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040000 heterotaxic @@ -48988,8 +49055,8 @@ height'). Shaped like a ring - 2018-05-24T03:56:53Z + http://orcid.org/0000-0001-5208-3432 annular quality PATO:0040001 @@ -49009,8 +49076,8 @@ height'). A positional quality inhering in a bearer by virtue of some aspect of that bearer beginning from a position on another entity. - 2018-05-24T04:10:53Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040002 @@ -49024,8 +49091,8 @@ height'). The ability of a pathogen to produce an infectious disease or disorder in an another organism. - 2018-08-02T04:24:52Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040003 pathogenicity @@ -49044,8 +49111,8 @@ height'). A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness. - 2018-08-02T04:39:30Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040004 plush @@ -49065,8 +49132,8 @@ height'). An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally. - 2018-11-12T22:54:16Z + http://orcid.org/0000-0001-5208-3432 posteroventrally oriented quality PATO:0040005 @@ -49086,8 +49153,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown. - 2018-11-12T18:09:59Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040006 crown like @@ -49106,8 +49173,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell. - 2018-11-12T18:12:47Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040007 shell shaped @@ -49126,8 +49193,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band. - 2018-11-12T18:15:10Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040008 fringed @@ -49147,8 +49214,8 @@ height'). A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl. - 2018-11-12T18:17:01Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040009 bowl shaped @@ -49167,8 +49234,8 @@ height'). Mobility relative to a second entity. - 2018-11-12T18:20:08Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040010 For example, distinct anteroposterior mobility of palatine relative to mesethmoid. @@ -49188,8 +49255,8 @@ height'). Immobility relative to a second entity. - 2018-11-12T18:21:07Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040011 For example: distinct anteroposterior immobility of palatine relative to mesethmoid. @@ -49209,8 +49276,8 @@ height'). A shape that is in the form of a plug, being tube-like and expanded on one end. - 2018-11-12T18:24:41Z + http://orcid.org/0000-0001-5208-3432 plug like quality PATO:0040012 @@ -49230,8 +49297,8 @@ height'). An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially. - 2018-11-12T18:27:57Z + http://orcid.org/0000-0001-5208-3432 dorsomedially directed quality PATO:0040013 @@ -49251,8 +49318,8 @@ height'). A shape that is in the form of a narrow strip encircling an object. - 2018-11-12T18:31:51Z + http://orcid.org/0000-0001-5208-3432 band like band-like strip like @@ -49276,8 +49343,8 @@ height'). A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling that of a trough, being narrow, long, and boxlike in shape. - 2018-11-12T18:35:51Z + http://orcid.org/0000-0001-5208-3432 trough like trough-like trough-shaped @@ -49300,8 +49367,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides. - 2018-11-12T18:39:48Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040016 pentagonal @@ -49321,8 +49388,8 @@ height'). A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal. - 2018-11-12T19:01:51Z + http://orcid.org/0000-0001-5208-3432 dysgenesis quality PATO:0040017 @@ -49342,8 +49409,8 @@ height'). Fibrosis is the formation of excess fibrous connective tissue in an organ or tissue in a reparative or reactive process. - 2018-11-12T23:16:17Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040019 fibrotic @@ -49362,8 +49429,8 @@ height'). Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal. - 2018-11-16T22:52:49Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040020 spayed female @@ -49376,7 +49443,7 @@ height'). The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.. - + http://orcid.org/0000-0001-5208-3432 quality PATO:0040021 unpaired @@ -49395,8 +49462,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape. - 2018-11-19T21:49:07Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040022 flared @@ -49409,8 +49476,8 @@ height'). An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body. - 2018-11-19T21:54:33Z + http://orcid.org/0000-0001-5208-3432 disto-medial orientation distomedial quality @@ -49431,7 +49498,7 @@ height'). The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism. - + http://orcid.org/0000-0001-5208-3432 paired quality PATO:0040024 @@ -49451,7 +49518,7 @@ height'). A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present. - + http://orcid.org/0000-0001-5208-3432 quality PATO:0040025 lesioned @@ -52183,6 +52250,194 @@ height'). A quality inhering in a bearer by virtue of the bearer's being present in females and absent from males in members of the same species. http://orcid.org/0000-0002-1373-1705 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2 + + + + + + + + + + + 1 + + + + + + + + + + + 2 + + + + + + + + + + + 2 + + + + + + + + + + + + + + + + + + + + + 2 + + + + + + + + + + + 1 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/pato-full.json b/pato-full.json index 6265dcda..f72479c1 100644 --- a/pato-full.json +++ b/pato-full.json @@ -1,81 +1,28 @@ { "graphs" : [ { "nodes" : [ { - "id" : "http://purl.obolibrary.org/obo/PATO_0000004", - "meta" : { - "definition" : { - "val" : "A quality of inhering in a bearer by virtue of the bearer's disposition to move freely.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Should be defined using translocation." - } ] - }, - "type" : "CLASS", - "lbl" : "mobility" - }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000488", "meta" : { "definition" : { "val" : "A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "unresponsive", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000487" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "unresponsive to" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001336", - "meta" : { - "definition" : { - "val" : "A biological sex quality inhering in an individual whose sex is unknown.", - "xrefs" : [ "MGED:MGED" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Unknown is not a type of sex." - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete unknown sex" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0010646", - "meta" : { - "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", - "xrefs" : [ "GOC:dph", "GOC:tb" ] - }, - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000487" } ] }, "type" : "CLASS", - "lbl" : "regulation of cell communication" + "lbl" : "unresponsive to" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000487", "meta" : { @@ -83,7 +30,7 @@ "val" : "A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "responsive", @@ -108,6 +55,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "GO:0005622" }, { @@ -116,29 +66,21 @@ }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" } ] }, "type" : "CLASS", "lbl" : "obsolete intracellular part" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0010647", + "id" : "http://purl.obolibrary.org/obo/go#goslim_generic", "meta" : { - "definition" : { - "val" : "Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", - "xrefs" : [ "GOC:dph", "GOC:tb" ] - }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Generic GO slim" } ] }, - "type" : "CLASS", - "lbl" : "positive regulation of cell communication" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000003", + "id" : "http://purl.obolibrary.org/obo/PATO_0000489", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -149,39 +91,35 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete assay" + "lbl" : "obsolete vigorous response" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001337", + "id" : "http://purl.obolibrary.org/obo/PATO_0000480", "meta" : { - "definition" : { - "val" : "A yeast mating type.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "yeast mating type" + "lbl" : "obsolete positive regulation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001334", + "id" : "http://purl.obolibrary.org/obo/PATO_0000482", "meta" : { - "definition" : { - "val" : "A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Diameter" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "diameter" + "lbl" : "obsolete response value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000006", + "id" : "http://purl.obolibrary.org/obo/PATO_0000481", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -192,37 +130,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete process" + "lbl" : "obsolete negative regulation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000005", + "id" : "http://purl.obolibrary.org/obo/PATO_0000484", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete absolute activity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001335", - "meta" : { - "definition" : { - "val" : "A mating type that indicates whether the F plasmid has integrated into the chromosome.", - "xrefs" : [ "MGED:MGED" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "bacterial mating type" + "lbl" : "obsolete tactile hyporesponsive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000489", + "id" : "http://purl.obolibrary.org/obo/PATO_0000483", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -233,102 +156,163 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete vigorous response" + "lbl" : "obsolete tactile hyperresponsive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000008", + "id" : "http://purl.obolibrary.org/obo/PATO_0000486", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's scalar absolute value of the rate of change of the bearer's position.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Velocity" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "velocity", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "speed" + "lbl" : "obsolete moderate response" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000007", + "id" : "http://purl.obolibrary.org/obo/PATO_0000485", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative activity" + "lbl" : "obsolete mild response" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001338", + "id" : "http://purl.obolibrary.org/obo/PCO_0000004", "meta" : { "definition" : { - "val" : "A biological sex quality inhering in a population of multiple sexes.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A quality that inheres in a community.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "These may not belong under BFO:quality. May be better to call them community characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2." }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "For example a mixture of females and male or males and hermaphrodites." + "val" : "Includes qualities like diversity, species richness, stability, resilience, community structure, number of trophic levels. A community quality may depend on the qualities of individual organism in the community, but cannot be measured or described for a single individual." } ] }, "type" : "CLASS", - "lbl" : "mixed sex" + "lbl" : "quality of an ecological community" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0010648", + "id" : "http://purl.obolibrary.org/obo/PCO_0000003", "meta" : { "definition" : { - "val" : "Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", - "xrefs" : [ "GOC:dph", "GOC:tb" ] + "val" : "A quality that inheres in a biological population.", + "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Includes qualities like population size, population growth rate, carrying capacity, immigration rate, emigration rate, fecundity, and death rate. A population quality may depend on the qualities of individual organisms in the population, but cannot be measured or described for a single organism. This term may be replaced by a PATO term." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "See Chris's comments on population qualities at: http://code.google.com/p/popcomm-ontology/issues/detail?id=4. These may not belong under BFO:quality. May be better to call them population characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, "type" : "CLASS", - "lbl" : "negative regulation of cell communication" + "lbl" : "quality of a population" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001339", + "id" : "http://purl.obolibrary.org/obo/PATO_0000499", "meta" : { "definition" : { - "val" : "A composition quality inhering in an bearer by virtue of the bearer's homogeneity of a biomaterial.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A duration quality of a process which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "decreased time", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "decreased period", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "shortened period", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "fast time", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "low period", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000498" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000716" } ] }, "type" : "CLASS", - "lbl" : "biomaterial purity" + "lbl" : "decreased duration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000009", + "id" : "http://purl.obolibrary.org/obo/PATO_0000498", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "definition" : { + "val" : "A duration quality of a process which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "slow time", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "high time", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "chronic", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "prolonged period", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "increased time", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "increased period", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000499" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000715" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute speed" + "lbl" : "increased duration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000480", + "id" : "http://purl.obolibrary.org/obo/PATO_0000491", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -339,22 +323,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete positive regulation" + "lbl" : "obsolete sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000482", + "id" : "http://purl.obolibrary.org/obo/PATO_0000490", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete response value" + "lbl" : "obsolete rhythym value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000481", + "id" : "http://purl.obolibrary.org/obo/PATO_0000493", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -365,9 +349,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete negative regulation" + "lbl" : "obsolete amplitude value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000000", + "id" : "http://purl.obolibrary.org/obo/PATO_0000492", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -378,24 +362,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete pato" + "lbl" : "obsolete absolute rhythym value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001332", + "id" : "http://purl.obolibrary.org/obo/PATO_0000495", "meta" : { - "definition" : { - "val" : "A morphology quality inhering in a bearer by virtue of the bearer's lack of distinct morphology.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "amorphous" + "lbl" : "obsolete persistence value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000484", + "id" : "http://purl.obolibrary.org/obo/PATO_0000494", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -406,570 +388,684 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete tactile hyporesponsive" + "lbl" : "obsolete period value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001333", + "id" : "http://purl.obolibrary.org/obo/PATO_0000497", "meta" : { - "definition" : { - "val" : "A quality of a process which ends later than the natural end time.", - "xrefs" : [ "PATOC:melissa" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "temporally extended" + "lbl" : "obsolete relative rhythym value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000483", + "id" : "http://purl.obolibrary.org/obo/PATO_0000496", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete tactile hyperresponsive" + "lbl" : "obsolete phase value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000486", + "id" : "http://purl.obolibrary.org/obo/PCO_0000017", "meta" : { + "definition" : { + "val" : "A collection of organisms that has as parts every organism of given species and no organisms of any other species.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "At the moment there is no way to specify in an OWL axiom that the collection includes every individual of a species. This should be added, if possible." }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is neutral with respect to which organisms are included in a species. Membership will depend on the species concept and the taxonomic assertions used to define the species. These criteria must be specified by the user." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000120" } ] }, "type" : "CLASS", - "lbl" : "obsolete moderate response" + "lbl" : "species as a collection of organisms" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001330", + "id" : "http://purl.obolibrary.org/obo/PCO_0000018", "meta" : { "definition" : { - "val" : "A flavor quality inhering in a bearer by virtue of the bearer's lacking flavour.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "collection of organisms of the same species" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000120" } ] }, "type" : "CLASS", - "lbl" : "flavourless" + "lbl" : "single-species collection of organisms" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000002", + "id" : "http://purl.obolibrary.org/obo/PATO_0002205", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's ability to hold an electrical charge.", + "xrefs" : [ "Wikipedia:Wikipedia" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-25T09:42:51Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Capacitance is also a measure of the amount of electrical energy stored (or separated) for a given electric potential." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete value" + "lbl" : "capacitance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000001", + "id" : "http://purl.obolibrary.org/obo/PATO_0002206", "meta" : { "definition" : { - "val" : "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities", + "val" : "A maturity quality inhering to a bearer by virtue of the bearer's being at the point or short after birth.", "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "quality (PATO)" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-05-07T12:11:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000072" } ] }, "type" : "CLASS", - "lbl" : "quality" + "lbl" : "neonatal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000485", + "id" : "http://purl.obolibrary.org/obo/PATO_0002203", "meta" : { + "definition" : { + "val" : "Handedness where the organism preferentially uses the right hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot.", + "xrefs" : [ "birnlex:2184" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-22T05:49:19Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" } ] }, "type" : "CLASS", - "lbl" : "obsolete mild response" + "lbl" : "right handedness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001331", + "id" : "http://purl.obolibrary.org/obo/PATO_0002204", "meta" : { "definition" : { - "val" : "An odor quality inhering in a bearer by virtue of the bearer's having odour.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Handedness where the organism exhibits no overall dominance in the use of right or left hand or foot in the performance of tasks that require one hand or foot or a dominant hand or foot.", + "xrefs" : [ "birnlex:2042" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-22T05:49:30Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "odorous" + "lbl" : "ambidextrous handedness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000499", + "id" : "http://purl.obolibrary.org/obo/PATO_0002209", "meta" : { "definition" : { - "val" : "A duration quality of a process which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having the shape of an incisor tooth.", + "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/incisiform" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "fast time", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "decreased time", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "low period", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "decreased period", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "shortened period", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000498" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000716" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T12:16:04Z" } ] }, "type" : "CLASS", - "lbl" : "decreased duration" + "lbl" : "incisiform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000015", + "id" : "http://purl.obolibrary.org/obo/PATO_0002207", "meta" : { "definition" : { - "val" : "A chromatic scalar-circular quality inhering in an object that manifests in an observer by virtue of the dominant wavelength of the visible light; may be subject to fiat divisions, typically into 7 or 8 spectra.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "A quality that is the distance between the end of the inserted object and the surface of the object into which it penetrates.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-05-14T11:40:24Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "color hue" + "lbl" : "insertion depth" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002286", + "id" : "http://purl.obolibrary.org/obo/PATO_0002208", "meta" : { "definition" : { - "val" : "Inverse of developmentally preceded by", - "xrefs" : [ ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a spoon.", + "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/spoon-shaped" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T12:13:12Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "developmentally succeeded by" + "type" : "CLASS", + "lbl" : "spoon-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001347", + "id" : "http://purl.obolibrary.org/obo/PATO_0002201", "meta" : { "definition" : { - "val" : "A bacterial mating type indicating the presence of F plasmid in a bacterial cell.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A behavioral quality inhering ina bearer by virtue of the bearer's unequal distribution of fine motor skill between its left and right hands or feet.", + "xrefs" : [ "birnlex:2178" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-22T05:48:33Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Adapted from Wikipedia and the birnlex term that is dbxref'd. Added on behalf of OBI at March 2010 workshop." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" } ] }, "type" : "CLASS", - "lbl" : "F mating type" + "lbl" : "handedness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000498", + "id" : "http://purl.obolibrary.org/obo/PATO_0002202", "meta" : { "definition" : { - "val" : "A duration quality of a process which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Handedness where the organism preferentially uses the left hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot.", + "xrefs" : [ "birnlex:2038" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "slow time", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "high time", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "chronic", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "prolonged period", - "xrefs" : [ ] + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" }, { - "pred" : "hasExactSynonym", - "val" : "increased time", - "xrefs" : [ ] + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-22T05:49:06Z" }, { - "pred" : "hasExactSynonym", - "val" : "increased period", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000499" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000715" } ] }, "type" : "CLASS", - "lbl" : "increased duration" + "lbl" : "left handedness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000014", + "id" : "http://purl.obolibrary.org/obo/PATO_0002200", "meta" : { "definition" : { - "val" : "A composite chromatic quality composed of hue, saturation and intensity parts.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality which inheres in a substance by virtue of the ease with which the substance can be changed into a gaseous state.", + "xrefs" : [ "PATOC:JH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "colour", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "relative color", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000020" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-15T04:38:02Z" } ] }, "type" : "CLASS", - "lbl" : "color" + "lbl" : "vaporizability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001348", + "id" : "http://purl.obolibrary.org/obo/PCO_0000000", "meta" : { "definition" : { - "val" : "A bacterial mating type indicating the absence of F plasmid in a bacterial cell.", - "xrefs" : [ "MGED:MGED" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "F-", + "val" : "A material entity that consists of two or more organisms, viruses, or viroids.", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "group of organism" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "May be of the same or different species." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Examples include: population, community, species (meaning the collection of organisms that makes up a species, not the taxonomic rank), and family." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "organism collection" } ] }, "type" : "CLASS", - "lbl" : "F minus mating type" + "lbl" : "collection of organisms" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000017", + "id" : "http://purl.obolibrary.org/obo/RO_0000080", "meta" : { "definition" : { - "val" : "A scalar chromatic property that is the degree of purity of perceived light.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is quality of" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Color saturation refers to the amount of white light or gray paint mixed in with the hue (single wavelength) and is a measure of color purity." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "quality_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A quality inheres in its bearer at all times for which the quality exists." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this red color is a quality of this apple" } ] }, - "type" : "CLASS", - "lbl" : "color saturation" + "type" : "PROPERTY", + "lbl" : "quality of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001345", + "id" : "http://purl.obolibrary.org/obo/PCO_0000002", "meta" : { "definition" : { - "val" : "A S. pombe mating type determined by the mat1-Mc and mat1-Mi on the mat1 locus.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "M", + "val" : "A community of at least two different species, living in a particular area. Must have at least two populations of different species as members.", "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "h -", - "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "ISBN:0865423504" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000123" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "multispecies community" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Ecological community is defined broadly here, but includes both ecological interactions (inherited from parent term community) and spatial co-existence. It may be used to describe every organisms living in an area, but is often used to refer only to organisms of a particular taxon or guild (e.g., the plant community, the insect community, the herbivore community). The word community, as it often used to describe a group of humans living together, is a type of single-species collection of organisms, not an ecological community." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Not sure if the equivalancy axiom specifies that both populations are located in the same site." } ] }, "type" : "CLASS", - "lbl" : "h minus" + "lbl" : "ecological community" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001346", + "id" : "http://purl.obolibrary.org/obo/PCO_0000001", "meta" : { "definition" : { - "val" : "A S. pombe mating type determined by the mat1-Pc and mat1-Pi on the mat1 locus.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "P", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "h+", + "val" : "A collection of organisms, all of the same species, that live in the same place.", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "This a general term that can include every organism of a species living in an area or any subset of them. Subclasses can be more specific as needed." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "ISBN:0878932739" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "It is sometimes difficult to define the physical boundaries of a population. In the case of sexually reproducing organisms, the individuals within a population have the potential to reproduce with one another during the course of their lifetimes. 'Community', as often used to describe a group of humans, is a type of population. \n\nClasses for population already exist in IDO ('organism population', IDO_0000509) and OBI ('population', OBI_0000181). The definitions should be standardized across OBO Foundry ontologies and only one term used." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "CLASS", - "lbl" : "h plus" + "lbl" : "population of organisms" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000016", + "id" : "http://purl.obolibrary.org/obo/PATO_0002216", "meta" : { "definition" : { - "val" : "A scalar optical property that is the intensity, value or amount of perceived light.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A molecular quality that pertains to the post-translational modification of a protein by the covalent attachment of one or more ubiquitin monomer.", + "xrefs" : [ "neurolex:http://neurolex.org/" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "color value", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "color lightness", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "color intensity", + "pred" : "hasRelatedSynonym", + "val" : "Ubiquitylation", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T02:00:37Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Color brightness refers to the intensity, lightness or value of the light present. Think of this as a dimmer switch." + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "color brightness" + "lbl" : "ubiquinated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000019", + "id" : "http://purl.obolibrary.org/obo/PATO_0002217", "meta" : { "definition" : { - "val" : "A chromatic property that is the relative position of different hues or degrees of saturation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A molecular quality inhering in a bearer by virtue of the bearer's being combined, or impregnated, with nitric acid, or some of its compounds.", + "xrefs" : [ "neurolex:http://neurolex.org/wiki/Category:Nitrated_Molecular_Quality" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T02:04:03Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "color pattern" + "lbl" : "nitrated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000018", + "id" : "http://purl.obolibrary.org/obo/PATO_0002214", "meta" : { "definition" : { - "val" : "A luminous flux quality inhering in a bearer by virtue of the bearer's emitting longer wavelength light following the absorption of shorter wavelength radiation; fluorescence is common with aromatic compounds with several rings joined together.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having two lobes.", + "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/bilobed" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T01:54:08Z" } ] }, "type" : "CLASS", - "lbl" : "fluorescence" + "lbl" : "bilobed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001349", + "id" : "http://purl.obolibrary.org/obo/PATO_0002215", "meta" : { "definition" : { - "val" : "A mating type that indicates that the F plasmid has integrated into the chromosome.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having the shape of a scythe or sickle.", + "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/falciform" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "Hfr", + "val" : "hooked", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "unciform", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "sickle-shaped", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "scythe-shaped", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "uncinate", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "falcate", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T01:57:46Z" } ] }, "type" : "CLASS", - "lbl" : "high frequency recombinant" + "lbl" : "falciform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000491", + "id" : "http://purl.obolibrary.org/obo/PATO_0002218", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's loss of myelin sheath.", + "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/demyelinated" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T02:08:06Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "For example loss of myelin sheath from a normally myelinated axon or dendrite." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete sensitivity value" + "lbl" : "demyelinated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001340", + "id" : "http://purl.obolibrary.org/obo/PATO_0002219", "meta" : { "definition" : { - "val" : "A biological sex quality inhering in an organism or a population with both male and female sexual organs in one individual.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A quality inhering in a bearer that is shaped in the form of a fan.", + "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/fan-shaped" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "intersex", + "val" : "fan-like", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-09T01:43:42Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "hermaphrodite" + "lbl" : "fan-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000490", + "id" : "http://purl.obolibrary.org/obo/RO_0000086", "meta" : { + "definition" : { + "val" : "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0000086" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete rhythym value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000493", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this apple has quality this red color" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_quality" } ] }, - "type" : "CLASS", - "lbl" : "obsolete amplitude value" + "type" : "PROPERTY", + "lbl" : "has quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000492", + "id" : "http://purl.obolibrary.org/obo/PATO_0002212", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being small or narrow in circumference or width in proportion to length or height.", + "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/slender" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "gracile", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T01:32:26Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute rhythym value" + "lbl" : "slender" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001343", + "id" : "http://purl.obolibrary.org/obo/PATO_0002213", "meta" : { "definition" : { - "val" : "A S. pombe mating type determined by the gene configuration on the mat1 locus.", + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T01:47:09Z" } ] }, "type" : "CLASS", - "lbl" : "Schizosaccharomyces pombe mating type" + "lbl" : "obclavate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000495", + "id" : "http://purl.obolibrary.org/obo/PATO_0002210", "meta" : { + "definition" : { + "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a teardrop.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "bulblike", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "bulb-shaped", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "swollen", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T12:19:08Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete persistence value" + "lbl" : "bulbous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000011", + "id" : "http://purl.obolibrary.org/obo/PATO_0002211", "meta" : { "definition" : { - "val" : "A time quality inhering in a bearer by virtue of how long the bearer has existed.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or inward.", + "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/recurved" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T12:26:45Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "age" + "lbl" : "recurved" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000494", + "id" : "http://purl.obolibrary.org/obo/PATO_0000444", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -980,103 +1076,119 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete period value" + "lbl" : "obsolete percentage value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001344", + "id" : "http://purl.obolibrary.org/obo/PATO_0001776", "meta" : { "definition" : { - "val" : "A S. cerevisiae mating type cells that secrete a pheromone that stimulates a haploids.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A flexibility which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasBroadSynonym", - "val" : "alpha", + "pred" : "hasExactSynonym", + "val" : "high flexibility", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001777" } ] }, "type" : "CLASS", - "lbl" : "alpha mating type (yeast)" + "lbl" : "increased flexibility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000010", + "id" : "http://purl.obolibrary.org/obo/PATO_0000443", "meta" : { + "definition" : { + "val" : "A sleep pattern quality inhering in a bearer by virtue of the bearer's disrupted sleep during normal sleeping period; often accompanied by cataplexy, sleep paralysis.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Consider NBO:0000423" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative speed" + "lbl" : "obsolete narcolepsy" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001341", + "id" : "http://purl.obolibrary.org/obo/PATO_0001777", "meta" : { "definition" : { - "val" : "A S. cerevisiae mating type cells that secrete a pheromone that in alpha haploids stimulates processes that lead to mating.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A flexibility which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { - "pred" : "hasBroadSynonym", - "val" : "a", + "pred" : "hasExactSynonym", + "val" : "low flexibility", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001776" } ] }, "type" : "CLASS", - "lbl" : "a mating type (yeast)" + "lbl" : "decreased flexibility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000497", + "id" : "http://purl.obolibrary.org/obo/PATO_0001774", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's having or existing in many phases.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative rhythym value" + "lbl" : "polyphasic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000013", + "id" : "http://purl.obolibrary.org/obo/PATO_0000446", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative age" + "lbl" : "obsolete absolute percentage value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001342", + "id" : "http://purl.obolibrary.org/obo/PATO_0001775", "meta" : { "definition" : { - "val" : "A S. cerevisiae mating type.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the dorsal-ventral axis.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "Saccharomyces cerevisiae mating type" + "lbl" : "dorsal-ventral polarity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000012", + "id" : "http://purl.obolibrary.org/obo/PATO_0000445", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -1087,61 +1199,61 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute age" + "lbl" : "obsolete relative percentage value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000496", + "id" : "http://purl.obolibrary.org/obo/PATO_0000448", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete phase value" + "lbl" : "obsolete high percentage" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002205", + "id" : "http://purl.obolibrary.org/obo/GO_0044464", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's ability to hold an electrical charge.", - "xrefs" : [ "Wikipedia:Wikipedia" ] + "val" : "OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms.", + "xrefs" : [ "GOC:jl" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-25T09:42:51Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], + "xrefs" : [ { + "val" : "NIF_Subcellular:sao628508602" + } ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "cellular subcomponent", + "xrefs" : [ "NIF_Subcellular:sao628508602" ] }, { + "pred" : "hasRelatedSynonym", + "val" : "protoplast", + "xrefs" : [ "GOC:mah" ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "cellular_component" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Capacitance is also a measure of the amount of electrical energy stored (or separated) for a given electric potential." - } ] - }, - "type" : "CLASS", - "lbl" : "capacitance" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001358", - "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having a knob or knoblike protuberance.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", + "val" : "CL:0000000" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" } ] }, "type" : "CLASS", - "lbl" : "umbonate" + "lbl" : "obsolete cell part" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000026", + "id" : "http://purl.obolibrary.org/obo/PATO_0000447", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -1152,341 +1264,346 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete carbohydrate composition" + "lbl" : "obsolete decreased percentage" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000025", + "id" : "http://purl.obolibrary.org/obo/PATO_0001778", "meta" : { "definition" : { - "val" : "A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts.", + "val" : "A strength which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "content", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "structure, composition", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "compositionality", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "composed of", + "val" : "high strength", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0002015" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "For example calcium composition (which may inhere in bone), haemoglobin composition (which may inhere in blood)." + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001779" } ] }, "type" : "CLASS", - "lbl" : "composition" + "lbl" : "increased strength" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002206", + "id" : "http://purl.obolibrary.org/obo/PATO_0001779", "meta" : { "definition" : { - "val" : "A maturity quality inhering to a bearer by virtue of the bearer's being at the point or short after birth.", + "val" : "A strength which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "weak", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-05-07T12:11:47Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001778" } ] }, "type" : "CLASS", - "lbl" : "neonatal" + "lbl" : "decreased strength" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001359", + "id" : "http://purl.obolibrary.org/obo/PATO_0000449", "meta" : { - "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having many wrinkles or creases on the surface.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "rugose" + "lbl" : "obsolete increased percentage" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000028", + "id" : "http://purl.obolibrary.org/obo/PATO_0000440", "meta" : { + "definition" : { + "val" : "A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000330" } ] }, "type" : "CLASS", - "lbl" : "obsolete macromolecular composition" + "lbl" : "regular spatial pattern" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001356", + "id" : "http://purl.obolibrary.org/obo/PATO_0001772", "meta" : { "definition" : { - "val" : "A shape quality inhering in a cell by virtue of the bearer's ability to take on two or more different shapes during its life cycle.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being extended on all sides of another entity simultaneously.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "encircling", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "wrapping", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "enclosing", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Nedd to add reciprocal of relationship to 'surrounded by' PATO:0005016." } ] }, "type" : "CLASS", - "lbl" : "pleomorphic" + "lbl" : "surrounding" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002203", + "id" : "http://purl.obolibrary.org/obo/PATO_0001773", "meta" : { "definition" : { - "val" : "Handedness where the organism preferentially uses the right hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot.", - "xrefs" : [ "birnlex:2184" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's having only one phase or stage.", + "xrefs" : [ "hefreedictionary.com:hefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-22T05:49:19Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" } ] }, "type" : "CLASS", - "lbl" : "right handedness" + "lbl" : "monophasic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000027", + "id" : "http://purl.obolibrary.org/obo/PATO_0000442", "meta" : { + "definition" : { + "val" : "A sleep pattern quality inhering in a bearer by virtue of the bearer's inability to sleep.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Consider NBO:0000422." }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete electrolyte composition" + "lbl" : "obsolete insomnia" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002204", + "id" : "http://purl.obolibrary.org/obo/PATO_0001770", "meta" : { "definition" : { - "val" : "Handedness where the organism exhibits no overall dominance in the use of right or left hand or foot in the performance of tasks that require one hand or foot or a dominant hand or foot.", - "xrefs" : [ "birnlex:2042" ] + "val" : "A viability quality inhering in a population by virtue of some of it's members' ability to survive.", + "xrefs" : [ "PATOC:CVC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-22T05:49:30Z" } ] }, "type" : "CLASS", - "lbl" : "ambidextrous handedness" + "lbl" : "semi-viable" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001357", + "id" : "http://purl.obolibrary.org/obo/PATO_0000441", "meta" : { "definition" : { - "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped like a cushion or has a marked convex cushion-like form.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's marked by tedious repetition.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "pulvinate" + "lbl" : "repetitive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002209", + "id" : "http://purl.obolibrary.org/obo/PATO_0001771", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having the shape of an incisor tooth.", - "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/incisiform" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0002259" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T12:16:04Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "incisiform" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000029", + "id" : "http://purl.obolibrary.org/obo/PATO_0001787", "meta" : { + "definition" : { + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete protein composition" + "lbl" : "rotational curvature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002207", + "id" : "http://purl.obolibrary.org/obo/PATO_0000455", "meta" : { "definition" : { - "val" : "A quality that is the distance between the end of the inserted object and the surface of the object into which it penetrates.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A maturity quality inhering in a bearer by virtue of the bearer's having arrived at the onset of puberty (the age at which sex glands become functional) but not yet fully mature.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-05-14T11:40:24Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "insertion depth" + "lbl" : "pubescent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002208", + "id" : "http://purl.obolibrary.org/obo/PATO_0001788", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a spoon.", - "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/spoon-shaped" ] + "val" : "A density which is higher relative to the normal or average.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high density", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T12:13:12Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001790" } ] }, "type" : "CLASS", - "lbl" : "spoon-shaped" + "lbl" : "increased mass density" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001350", + "id" : "http://purl.obolibrary.org/obo/PATO_0000454", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the rate of change of the bearer's angular velocity.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Angular_acceleration" ] + "val" : "A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "angular acceleration" + "lbl" : "hairy" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001351", + "id" : "http://purl.obolibrary.org/obo/PATO_0001785", "meta" : { "definition" : { - "val" : "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given area.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Area_density" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved outward.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: obsolete, definition too ambiguous." } ] }, "type" : "CLASS", - "lbl" : "area density" + "lbl" : "splayed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000020", + "id" : "http://purl.obolibrary.org/obo/PATO_0000457", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete deviation(from_normal) value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001354", + "id" : "http://purl.obolibrary.org/obo/PATO_0001786", "meta" : { "definition" : { - "val" : "A optical quality inhering in a bearer by virtue of the bearer's exhibiting low opacity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions.", + "xrefs" : [ "die.net:die.net" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "subdivided", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "divided", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "forked", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "septate", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "clefted", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "translucent" + "lbl" : "split" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002201", + "id" : "http://purl.obolibrary.org/obo/PATO_0000456", "meta" : { - "definition" : { - "val" : "A behavioral quality inhering ina bearer by virtue of the bearer's unequal distribution of fine motor skill between its left and right hands or feet.", - "xrefs" : [ "birnlex:2178" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-22T05:48:33Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Adapted from Wikipedia and the birnlex term that is dbxref'd. Added on behalf of OBI at March 2010 workshop." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" } ] }, "type" : "CLASS", - "lbl" : "handedness" + "lbl" : "obsolete abstract" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000022", + "id" : "http://purl.obolibrary.org/obo/PATO_0000459", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -1497,130 +1614,129 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete gametophytic compatability" + "lbl" : "obsolete relative quantity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002202", + "id" : "http://purl.obolibrary.org/obo/PATO_0000458", "meta" : { - "definition" : { - "val" : "Handedness where the organism preferentially uses the left hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot.", - "xrefs" : [ "birnlex:2038" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-22T05:49:06Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "left handedness" + "lbl" : "obsolete presence value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000021", + "id" : "http://purl.obolibrary.org/obo/PATO_0001789", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to harmonious coexistence.", + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's having a shape resembling a dome.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Needs redefined or obsoleted. Is this the same as genetic incompatibility? Moved to organismal quality." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "compatibility" + "lbl" : "domed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001355", + "id" : "http://purl.obolibrary.org/obo/PATO_0001780", "meta" : { "definition" : { - "val" : "A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally developed, usually due to malnutrition.", + "xrefs" : [ "Wiikipedia:Wiikipedia" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001857" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "dystrophied", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "convex" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000024", - "meta" : { + "pred" : "hasRelatedSynonym", + "val" : "dystrophy", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete sporophytic compatability" + "lbl" : "dystrophic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001352", + "id" : "http://purl.obolibrary.org/obo/RO_0000057", "meta" : { "definition" : { - "val" : "A density quality which is equal to the mass exerting an influence on a one-dimensional object.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Linear_density" ] + "val" : "a relation between a process and a continuant, in which the continuant is somehow involved in the process", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_participant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this investigation has participant this investigator" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this process has participant this input material (or this output material)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this blood coagulation has participant this blood clot" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has participant" + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:has_participant" } ] }, - "type" : "CLASS", - "lbl" : "linear density" + "type" : "PROPERTY", + "lbl" : "has participant" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002200", + "id" : "http://purl.obolibrary.org/obo/PATO_0000451", "meta" : { - "definition" : { - "val" : "A quality which inheres in a substance by virtue of the ease with which the substance can be changed into a gaseous state.", - "xrefs" : [ "PATOC:JH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-15T04:38:02Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "vaporizability" + "lbl" : "obsolete pilosity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001353", + "id" : "http://purl.obolibrary.org/obo/PATO_0001783", "meta" : { "definition" : { - "val" : "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given volume.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Mass_density" ] + "val" : "An intensity which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low intensity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001782" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "volumetric density" + "lbl" : "decreased intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000023", + "id" : "http://purl.obolibrary.org/obo/PATO_0000450", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -1631,180 +1747,201 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative compatability" + "lbl" : "obsolete low percentage" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002264", + "id" : "http://purl.obolibrary.org/obo/PATO_0001784", "meta" : { "definition" : { - "val" : "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.", - "xrefs" : [ ] + "val" : "A branched quality inhering in a bearer by virtue of the bearer's being divided into two branches.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "affects", + "val" : "forked", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." + "pred" : "hasExactSynonym", + "val" : "bifid", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001572" } ] }, - "type" : "PROPERTY", - "lbl" : "acts upstream of or within" + "type" : "CLASS", + "lbl" : "bifurcated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002216", + "id" : "http://purl.obolibrary.org/obo/PATO_0000453", "meta" : { "definition" : { - "val" : "A molecular quality that pertains to the post-translational modification of a protein by the covalent attachment of one or more ubiquitin monomer.", - "xrefs" : [ "neurolex:http://neurolex.org/" ] + "val" : "A pilosity quality inhering in a bearer by virtue of the bearer's lack of hairs or bristles.", + "xrefs" : [ "PATOC:CJM", "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "Ubiquitylation", + "val" : "hairless", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T02:00:37Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "ubiquinated" + "lbl" : "glabrous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001369", + "id" : "http://purl.obolibrary.org/obo/PATO_0001781", "meta" : { "definition" : { - "val" : "A shape quality inhering in a colony by virtue of the bearer's appearing above the medium surface with terraced edges.", + "val" : "A thickness quality which lacks pattern.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "raised" + "lbl" : "irregular thickness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000037", + "id" : "http://purl.obolibrary.org/obo/PATO_0000452", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative pilosity value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001782", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's density, firmness, or viscosity.", + "val" : "An intensity which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "firmness", + "pred" : "hasExactSynonym", + "val" : "high intensity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001783" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "consistency" + "lbl" : "increased intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000036", + "id" : "http://purl.obolibrary.org/obo/PCO_0000031", "meta" : { + "definition" : { + "val" : "A material entity that is one or more organisms, viruses or viroids.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "CLASS", - "lbl" : "obsolete water content" + "lbl" : "organismal entity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002217", + "id" : "http://purl.obolibrary.org/obo/PATO_0001798", "meta" : { "definition" : { - "val" : "A molecular quality inhering in a bearer by virtue of the bearer's being combined, or impregnated, with nitric acid, or some of its compounds.", - "xrefs" : [ "neurolex:http://neurolex.org/wiki/Category:Nitrated_Molecular_Quality" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T02:04:03Z" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "twisted", + "xrefs" : [ ] }, { + "pred" : "hasRelatedSynonym", + "val" : "tightly curled", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "nitrated" + "lbl" : "kinked" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000039", + "id" : "http://purl.obolibrary.org/obo/RO_0000052", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's orientation in space.", - "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + "val" : "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "inheres_in" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "TODO: consider merging with angular placement." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this red color inheres in this apple" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A dependent inheres in its bearer at all times for which the dependent exists." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this fragility inheres in this vase" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "inheres in" } ] }, - "type" : "CLASS", - "lbl" : "direction" + "type" : "PROPERTY", + "lbl" : "inheres in" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002214", + "id" : "http://purl.obolibrary.org/obo/PATO_0000466", "meta" : { - "definition" : { - "val" : "A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having two lobes.", - "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/bilobed" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T01:54:08Z" } ] }, "type" : "CLASS", - "lbl" : "bilobed" + "lbl" : "obsolete none" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001367", + "id" : "http://purl.obolibrary.org/obo/PATO_0001799", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's exhibiting disturbance of its smoothness or regularity.", + "xrefs" : [ ".thefreedictionary.com:.thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "lobate" + "lbl" : "ruffled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000038", + "id" : "http://purl.obolibrary.org/obo/PATO_0000465", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -1815,450 +1952,512 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete gel consistency" + "lbl" : "obsolete marked" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002215", + "id" : "http://purl.obolibrary.org/obo/PATO_0000468", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001997" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001796", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having the shape of a scythe or sickle.", - "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/falciform" ] + "val" : "A coiling which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "hooked", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "scythe-shaped", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "unciform", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "sickle-shaped", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "uncinate", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "falcate", + "val" : "low coiling", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T01:57:46Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001795" } ] }, "type" : "CLASS", - "lbl" : "falciform" + "lbl" : "decreased coiling" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001368", + "id" : "http://purl.obolibrary.org/obo/PATO_0000467", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having an irregularly toothed edge.", + "val" : "A quality inhering in a bearer by virtue of the bearer's existence.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#absent_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "jagged", + "val" : "present in organism", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000462" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "erose" + "lbl" : "present" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002218", + "id" : "http://purl.obolibrary.org/obo/PATO_0001797", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's loss of myelin sheath.", - "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/demyelinated" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T02:08:06Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "For example loss of myelin sheath from a normally myelinated axon or dendrite." + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001883" } ] }, - "type" : "CLASS", - "lbl" : "demyelinated" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002219", + "id" : "http://purl.obolibrary.org/obo/RO_0000056", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer that is shaped in the form of a fan.", - "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/fan-shaped" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "fan-like", + "val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this investigator participates in this investigation" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-09T01:43:42Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this input material (or this output material) participates in this process" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "participates in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this blood clot participates in this blood coagulation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "participates_in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "participates in" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000469", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "fan-shaped" + "lbl" : "obsolete high" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002263", + "id" : "http://purl.obolibrary.org/obo/RO_0000053", "meta" : { "definition" : { - "val" : "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.", + "val" : "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", "xrefs" : [ ] }, + "xrefs" : [ { + "val" : "RO:0000053" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." + "val" : "this apple is bearer of this red color" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this vase is bearer of this fragility" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is bearer of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "bearer_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "bearer of" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "bearer_of" } ] }, "type" : "PROPERTY", - "lbl" : "acts upstream of" + "lbl" : "bearer of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001361", + "id" : "http://purl.obolibrary.org/obo/PATO_0001790", "meta" : { "definition" : { - "val" : "A texture quality inhering in a bearer by virtue of the bearer's being covered with warts or projections that resemble warts resulting in a hard rough surface.", + "val" : "A density which is lower relative to the normal or average.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low density", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001788" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "warty" + "lbl" : "decreased mass density" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001362", + "id" : "http://purl.obolibrary.org/obo/PATO_0001791", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being confined or restricted to multiple locations.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "multi-focal", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001716" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "fragile" + "lbl" : "multi-localised" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000031", + "id" : "http://purl.obolibrary.org/obo/PATO_0000460", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's deviation from normal or average.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#abnormal_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "aberrant", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "atypical", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "atypia", + "xrefs" : [ ] }, { + "pred" : "hasRelatedSynonym", + "val" : "defective", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, "type" : "CLASS", - "lbl" : "obsolete metabolite composition" + "lbl" : "abnormal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000030", + "id" : "http://purl.obolibrary.org/obo/PATO_0000462", "meta" : { + "definition" : { + "val" : "A quality denoting the lack of an entity.", + "xrefs" : [ "thefreedictionary.:thefreedictionary." ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#absent_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "absent from organism", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "absence", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001996" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000467" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "See documentation here: http://code.google.com/p/phenotype-ontologies/wiki/ModelingOfAbsence" } ] }, "type" : "CLASS", - "lbl" : "obsolete enzyme composition" + "lbl" : "absent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001360", + "id" : "http://purl.obolibrary.org/obo/PATO_0001794", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having thin filamentous extensions at its edge.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being wound in a continuous series of loops.", + "xrefs" : [ "Online_Dictionary:Online_Dictionary" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "filamentous" + "lbl" : "coiling" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000033", + "id" : "http://purl.obolibrary.org/obo/PATO_0001795", "meta" : { "definition" : { - "val" : "A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/concentration" ] + "val" : "A coiling which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "concentration", + "val" : "high coiling", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001796" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "concentration of" + "lbl" : "increased coiling" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002212", + "id" : "http://purl.obolibrary.org/obo/PATO_0000461", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being small or narrow in circumference or width in proportion to length or height.", - "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/slender" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#abnormal_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "gracile", + "val" : "average", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T01:32:26Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000460" } ] }, "type" : "CLASS", - "lbl" : "slender" + "lbl" : "normal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001365", + "id" : "http://purl.obolibrary.org/obo/PATO_0001792", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having spines, thorns or similar thin projections on its surface.", + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located on left side of from the a another entity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "spiny" + "lbl" : "left side of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002213", + "id" : "http://purl.obolibrary.org/obo/PATO_0000464", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of not being clearly visible.", + "xrefs" : [ "thefreedictionary:thefreedictionary" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "faint", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T01:47:09Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000463" } ] }, "type" : "CLASS", - "lbl" : "obclavate" + "lbl" : "inconspicuous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001366", + "id" : "http://purl.obolibrary.org/obo/PATO_0000463", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being small and resembling a point.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of being clearly visible.", + "xrefs" : [ "thefreedictionary:thefreedictionary" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "distinct", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000464" } ] }, "type" : "CLASS", - "lbl" : "punctiform" + "lbl" : "conspicuous" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002258", + "id" : "http://purl.obolibrary.org/obo/PATO_0001793", "meta" : { "definition" : { - "val" : "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p", - "xrefs" : [ ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located on right side of a another entity.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "false" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "In general you should not use this relation to make assertions - use one of the more specific relations below this one" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "developmentally preceded by" + "type" : "CLASS", + "lbl" : "right side of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000032", + "id" : "http://purl.obolibrary.org/obo/PCO_0000028", "meta" : { + "definition" : { + "val" : "A collection of organisms of the same species whose members are all either genealogically related to each other or have mated with each other.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Biological or social relations are covered by RO_0002437 (biotically interacts with), but that relations does provide an easy way to specify that two entities are interacting with each other (participating in the same interaction). Until that axiom is specified, the logical definition of this term is incomplete." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "These relations can include shared values, occupying the same spatial regkion. A community be be a single species collection of organsisms (as in a human community, which is also a type of population) or a or multi-species collection of organisms (as in an ecological community)." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000123" } ] }, "type" : "CLASS", - "lbl" : "obsolete secondary product composition" + "lbl" : "community" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002210", + "id" : "http://purl.obolibrary.org/obo/PCO_0000027", "meta" : { "definition" : { - "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a teardrop.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "bulblike", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "bulb-shaped", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "swollen", + "val" : "A collection of organisms of the same species that has as members only humans.", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "human population" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "human community" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T12:19:08Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "CLASS", - "lbl" : "bulbous" + "lbl" : "collection of humans" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001363", + "id" : "http://purl.obolibrary.org/obo/PCO_0000029", "meta" : { + "definition" : { + "val" : "A collection of organisms that consists of two or more organisms from at least two species.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Need to add axiom to specify that it has at a mimum members of two different species, but not sure how to specify that. Can't say \"('has member' only ('member of' min 2 'species as a collection of organisms'))\"." }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000123" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000404" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "multi-species collection of organisms" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000035", + "id" : "http://purl.obolibrary.org/obo/PATO_0000477", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete carbohydrate concentration" + "lbl" : "obsolete good value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001364", + "id" : "http://purl.obolibrary.org/obo/PATO_0000476", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having root like extensions radiating from its center.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "rhizoidal" + "lbl" : "obsolete bad value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002211", + "id" : "http://purl.obolibrary.org/obo/PATO_0000479", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or inward.", - "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/recurved" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T12:26:45Z" } ] }, "type" : "CLASS", - "lbl" : "recurved" + "lbl" : "obsolete regulation value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000034", + "id" : "http://purl.obolibrary.org/obo/PATO_0000478", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -2269,176 +2468,133 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete protein concentration" + "lbl" : "obsolete poor value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002629", + "id" : "http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to", "meta" : { "definition" : { - "val" : "An intensity which is characterized by being very severe.", - "xrefs" : [ "PATO:MAH" ] + "val" : "q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-05-26T06:44:11Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "profound intensity" + "type" : "PROPERTY", + "lbl" : "different_in_magnitude_relative_to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000444", + "id" : "http://purl.obolibrary.org/obo/PATO_0000471", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete percentage value" + "lbl" : "obsolete low" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001776", + "id" : "http://purl.obolibrary.org/obo/PATO_0000470", "meta" : { "definition" : { - "val" : "A flexibility which is relatively high.", + "val" : "An amount which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high flexibility", + "val" : "present in greater numbers in organism", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001777" - } ] - }, - "type" : "CLASS", - "lbl" : "increased flexibility" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002254", - "meta" : { - "definition" : { - "val" : "x has developmental contribution from y iff x has some part z such that z develops from y", + "pred" : "hasRelatedSynonym", + "val" : "accessory", "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" + "pred" : "hasExactSynonym", + "val" : "supernumerary", + "xrefs" : [ ] }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - } ] - }, - "type" : "PROPERTY", - "lbl" : "has developmental contribution from" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000443", - "meta" : { - "definition" : { - "val" : "A sleep pattern quality inhering in a bearer by virtue of the bearer's disrupted sleep during normal sleeping period; often accompanied by cataplexy, sleep paralysis.", + "pred" : "hasExactSynonym", + "val" : "increased number", "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + }, { + "pred" : "hasRelatedSynonym", + "val" : "increased", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001997" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000650" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000420" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Consider NBO:0000423" } ] }, "type" : "CLASS", - "lbl" : "obsolete narcolepsy" + "lbl" : "increased amount" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001777", + "id" : "http://purl.obolibrary.org/obo/PATO_0000473", "meta" : { - "definition" : { - "val" : "A flexibility which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low flexibility", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001776" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "decreased flexibility" + "lbl" : "obsolete relative_quality value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001774", + "id" : "http://purl.obolibrary.org/obo/PATO_0000472", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having or existing in many phases.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "polyphasic" + "lbl" : "obsolete quality value" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002255", + "id" : "http://purl.obolibrary.org/obo/PATO_0000475", "meta" : { - "definition" : { - "val" : "inverse of has developmental contribution from", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "PROPERTY", - "lbl" : "developmentally contributes to" + "type" : "CLASS", + "lbl" : "obsolete threshability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000446", + "id" : "http://purl.obolibrary.org/obo/pato#towards", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Relation binding a relational quality or disposition to the relevant type of entity." } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute percentage value" + "type" : "PROPERTY", + "lbl" : "towards" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000445", + "id" : "http://purl.obolibrary.org/obo/PATO_0000474", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -2449,133 +2605,119 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative percentage value" + "lbl" : "obsolete shattering value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001775", + "id" : "http://purl.obolibrary.org/obo/ENVO_01001055", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the dorsal-ventral axis.", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] + "val" : "An environmental system determined by part of a living or dead animal, or a whole small animal.", + "xrefs" : [ ] + } }, "type" : "CLASS", - "lbl" : "dorsal-ventral polarity" + "lbl" : "environment associated with an animal part or small animal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000448", + "id" : "http://purl.obolibrary.org/obo/ENVO_01001057", + "meta" : { + "definition" : { + "val" : "An environmental system determined by part of a living or dead plant, or a whole small plant.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "environment associated with a plant part or small plant" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000408", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001499" } ] }, - "type" : "CLASS", - "lbl" : "obsolete high percentage" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002628", + "id" : "http://purl.obolibrary.org/obo/PATO_0000407", "meta" : { "definition" : { - "val" : "An intensity which is borderline in it its effect or force as compared to baseline or normal.", - "xrefs" : [ ] + "val" : "A quality inhering in a bearer by virtue of the bearer's having a horizontal surface without a slope, tilt, or curvature.", + "xrefs" : [ "web:http://www.merriam-webster.com/" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "plate-like", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-05-26T06:42:21Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "borderline intensity" + "lbl" : "flat" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0044464", + "id" : "http://purl.obolibrary.org/obo/PATO_0001738", "meta" : { "definition" : { - "val" : "OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms.", - "xrefs" : [ "GOC:jl" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking physically interaction with another entity.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_pir" ], - "xrefs" : [ { - "val" : "NIF_Subcellular:sao628508602" - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "protoplast", - "xrefs" : [ "GOC:mah" ] - }, { "pred" : "hasExactSynonym", - "val" : "cellular subcomponent", - "xrefs" : [ "NIF_Subcellular:sao628508602" ] + "val" : "dissociated", + "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", - "val" : "CL:0000000" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/go.owl" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cell part" + "lbl" : "dissociated from" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000447", + "id" : "http://purl.obolibrary.org/obo/PATO_0000409", "meta" : { + "definition" : { + "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting an equatorial diameter greater than its polar diameter.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "oblate spheroid", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete decreased percentage" + "lbl" : "oblate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001778", + "id" : "http://purl.obolibrary.org/obo/PATO_0001739", "meta" : { "definition" : { - "val" : "A strength which is relatively high.", + "val" : "A quality that inheres in an bearer by virtue of how that bearer interacts with radiation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high strength", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001779" } ] }, "type" : "CLASS", - "lbl" : "increased strength" + "lbl" : "radiation quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000449", + "id" : "http://purl.obolibrary.org/obo/PATO_0000400", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -2586,106 +2728,83 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete increased percentage" + "lbl" : "obsolete morphology value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001779", + "id" : "http://purl.obolibrary.org/obo/PATO_0001732", "meta" : { "definition" : { - "val" : "A strength which is relatively low.", + "val" : "A quality inhering in a plant by virtue of the bearer's disposition to not shed any body part.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "weak", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001778" } ] }, "type" : "CLASS", - "lbl" : "decreased strength" + "lbl" : "non-deciduous (any body part)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001772", + "id" : "http://purl.obolibrary.org/obo/PATO_0001733", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being extended on all sides of another entity simultaneously.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A quality inhering in a plant by virtue of the bearer's disposition to retain foliage.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "encircling", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "wrapping", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "enclosing", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Nedd to add reciprocal of relationship to 'surrounded by' PATO:0005016." } ] }, "type" : "CLASS", - "lbl" : "surrounding" + "lbl" : "evergreen (plant)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000440", + "id" : "http://purl.obolibrary.org/obo/PATO_0000402", "meta" : { "definition" : { - "val" : "A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A branchiness quality inhering in a bearer by virtue of the bearer's having branches.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "ramified", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "ramiform", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000330" + "val" : "http://purl.obolibrary.org/obo/PATO_0000414" } ] }, "type" : "CLASS", - "lbl" : "regular spatial pattern" + "lbl" : "branched" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001773", + "id" : "http://purl.obolibrary.org/obo/PATO_0001730", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having only one phase or stage.", - "xrefs" : [ "hefreedictionary.com:hefreedictionary.com" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to shed body parts.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "monophasic" + "lbl" : "deciduous (generic)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000442", + "id" : "http://purl.obolibrary.org/obo/PATO_0000401", "meta" : { - "definition" : { - "val" : "A sleep pattern quality inhering in a bearer by virtue of the bearer's inability to sleep.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Consider NBO:0000422." - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { @@ -2694,202 +2813,208 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete insomnia" + "lbl" : "obsolete shape value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001770", + "id" : "http://purl.obolibrary.org/obo/PATO_0001731", "meta" : { "definition" : { - "val" : "A viability quality inhering in a population by virtue of some of it's members' ability to survive.", - "xrefs" : [ "PATOC:CVC" ] + "val" : "A quality inhering in a plant by virtue of the bearer's disposition to shed foliage.", + "xrefs" : [ "PATOC:cjm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "semi-viable" + "lbl" : "deciduous (plant)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000441", + "id" : "http://purl.obolibrary.org/obo/PATO_0001736", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's marked by tedious repetition.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of solids.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "solid", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "repetitive" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001771", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0002259" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - } ] - }, - "type" : "CLASS" + "lbl" : "solid configuration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001309", + "id" : "http://purl.obolibrary.org/obo/PATO_0000404", "meta" : { "definition" : { - "val" : "A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point.", - "xrefs" : [ "PATOC:mellybelly" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals).", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "time", + "val" : "helicoid", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "helicoidal", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "helical", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "period", + "val" : "spiral", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "helix-shaped", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000081" + "val" : "PATO:0001363" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000415" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "duration" + "lbl" : "coiled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000455", + "id" : "http://purl.obolibrary.org/obo/PATO_0000403", "meta" : { "definition" : { - "val" : "A maturity quality inhering in a bearer by virtue of the bearer's having arrived at the onset of puberty (the age at which sex glands become functional) but not yet fully mature.", + "val" : "A concave quality inhering in a bearer by virtue of the bearer's resembling a groove or fissure.", "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "pubescent" + "lbl" : "cleft" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001787", + "id" : "http://purl.obolibrary.org/obo/PATO_0001737", "meta" : { "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis.", + "val" : "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of gases.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "gas", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "rotational curvature" + "lbl" : "gaseus configuration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001303", + "id" : "http://purl.obolibrary.org/obo/PATO_0001734", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing.", - "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] + "val" : "A quality inhering in a plant by virtue of the bearer's disposition to being between evergeen and deciduous.", + "xrefs" : [ "PATOC:cjm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "variability of a physical quality", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "variability" + "lbl" : "semi-deciduous(plant)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001788", + "id" : "http://purl.obolibrary.org/obo/PATO_0000406", "meta" : { "definition" : { - "val" : "A density which is higher relative to the normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high density", + "pred" : "hasNarrowSynonym", + "val" : "bowing", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "curled", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001790" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased mass density" + "lbl" : "curved" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001304", + "id" : "http://purl.obolibrary.org/obo/PATO_0001735", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of liquids.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "liquid", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "variability of temperature" + "lbl" : "liquid configuration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000454", + "id" : "http://purl.obolibrary.org/obo/PATO_0000405", "meta" : { "definition" : { - "val" : "A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections.", + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having parallel chains in undulate fashion on the border.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "hairy" + "lbl" : "curled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001785", + "id" : "http://purl.obolibrary.org/obo/PATO_0000419", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved outward.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "TODO: obsolete, definition too ambiguous." + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001997" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "splayed" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000457", + "id" : "http://purl.obolibrary.org/obo/PATO_0000418", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -2900,454 +3025,361 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete deviation(from_normal) value" + "lbl" : "obsolete relative number value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002632", + "id" : "http://purl.obolibrary.org/obo/PATO_0001749", "meta" : { "definition" : { - "val" : "A quality in which the effect or outcome is not primary or the focus of the observation.", - "xrefs" : [ "PATO:MAH" ] + "val" : "A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth.", + "xrefs" : [ "PATOC:mh" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pedomorphic growth", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "hypoplastic growth", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-05-26T13:17:45Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001752" } ] }, "type" : "CLASS", - "lbl" : "secondary" + "lbl" : "paedomorphic growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001301", + "id" : "http://purl.obolibrary.org/obo/PATO_0020001", "meta" : { "definition" : { - "val" : "An optical quality that is the mixture, purity or pattern of wavelengths of light perceived by the observer.", + "val" : "A biological sex quality inhering in an individual based upon genotypic composition that confers the capability for an organism to differentiate male gonads.", "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XY, though abnormal XXY and XYY would also result in a male phenotypic outcome." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "mah" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "chromatic property" + "lbl" : "male genotypic sex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001786", + "id" : "http://purl.obolibrary.org/obo/PATO_0020002", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions.", - "xrefs" : [ "die.net:die.net" ] + "val" : "A biological sex quality inhering in an individual or a population based upon genotypic composition that confers the capability for an organism to differentiate female gonads.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "subdivided", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "divided", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "forked", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "septate", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "clefted", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "split" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000456", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XX, though abnormal X0 and XXX would also result in a female phenotypic outcome." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "mah" } ] }, "type" : "CLASS", - "lbl" : "obsolete abstract" + "lbl" : "female genotypic sex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001302", + "id" : "http://purl.obolibrary.org/obo/PATO_0000411", "meta" : { "definition" : { - "val" : "A color consisting of red and orange hue with a slight amount of gray.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "round", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "rounded", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"val" : "true" + "val" : "http://purl.obolibrary.org/obo/PATO_0001742" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative quantity value" + "lbl" : "decreased radioactivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000458", + "id" : "http://purl.obolibrary.org/obo/PATO_0000410", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having leaflets or leaflets-like structures on each side of a common axis.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "of a leaf shape", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "feather-like", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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"type" : "CLASS", - "lbl" : "dystrophic" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000057", + "id" : "http://purl.obolibrary.org/obo/PATO_0000415", "meta" : { "definition" : { - "val" : "a relation between a process and a continuant, in which the continuant is somehow involved in the process", - "xrefs" : [ ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals).", + "xrefs" : [ "WordNet:WordNet" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this process has participant this input material (or this output material)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this blood coagulation has participant this blood clot" - }, { - 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"val" : "An occurrence quality inhering in a bearer by virtue of the bearer's having a course that occurs occasionally.", - "xrefs" : [ "PATO:MAH" ] + "val" : "A radiation exposure quality inhering in an organ by virtue of the multiplication of an equivalent dose to that organ multiplied by the tissue weighting factor for that organ.", + "xrefs" : [ "arpansa:arpansa" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-05-26T06:50:16Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "episodic" + "lbl" : "radiation effective dose" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000451", + "id" : "http://purl.obolibrary.org/obo/PATO_0001748", "meta" : { + "definition" : { + "val" : "A shape quality in which a portion of the outermost boundary of an entity folds in space such that a portion that was originally convex is now concave.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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"xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "forked", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "bifid", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001572" } ] }, "type" : "CLASS", - "lbl" : "bifurcated" + "lbl" : "obsolete count value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001300", + "id" : "http://purl.obolibrary.org/obo/PATO_0001746", "meta" : { "definition" : { - "val" : "An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A radiation exposure quality inhering in a tissue by virtue of the relation between the absorbed dose to the effective biological damage of the radiation to that tissue.", + "xrefs" : [ "arpansa:arpansa" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "optical quality" + "lbl" : "radiation equivalent dose" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000453", + "id" : "http://purl.obolibrary.org/obo/PATO_0001740", "meta" : { "definition" : { - "val" : "A pilosity quality inhering in a bearer by virtue of the bearer's lack of hairs or bristles.", - "xrefs" : [ "PATOC:CJM", "PATOC:GVG" ] + "val" : "A radiation quality inhering in a radioactive substance by virtue of its transformation (disintegration) rate.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "hairless", + "pred" : "hasExactSynonym", + "val" : "radioactivity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -3356,90 +3388,81 @@ } ] }, "type" : "CLASS", - "lbl" : "glabrous" + "lbl" : "activity (of a radionuclide)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001781", + "id" : "http://purl.obolibrary.org/obo/pato#has_ratio_quality", "meta" : { - "definition" : { - "val" : "A thickness quality which lacks pattern.", - "xrefs" : [ "PATOC:GVG" ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "irregular thickness" + "type" : "PROPERTY", + "lbl" : "has_ratio_quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001782", + "id" : "http://purl.obolibrary.org/obo/PATO_0020000", "meta" : { "definition" : { - "val" : "An intensity which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A biological sex quality inhering in an individual based upon genotypic composition of sex chromosomes.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high intensity", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001783" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, we have XY, XX, though abnormal XXY, X0, XYY, and other combinations are possible." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased intensity" + "lbl" : "genotypic sex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000452", + "id" : "http://purl.obolibrary.org/obo/PATO_0000429", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000689" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative pilosity value" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001314", + "id" : "http://purl.obolibrary.org/obo/PATO_0000422", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Auxotrophic" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001313" + "val" : "http://purl.obolibrary.org/obo/PATO_0000423" } ] }, "type" : "CLASS", - "lbl" : "variant temperature" + "lbl" : "auxotrophic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001798", + "id" : "http://purl.obolibrary.org/obo/PATO_0001754", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A peramorphic growth quality which is due to an earlier onset.", + "xrefs" : [ "PATOC:mh" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "twisted", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "tightly curled", + "pred" : "hasExactSynonym", + "val" : "precocious growth", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -3448,38 +3471,24 @@ } ] }, "type" : "CLASS", - "lbl" : "kinked" + "lbl" : "predisplaced growth" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000052", + "id" : "http://purl.obolibrary.org/obo/PATO_0001755", "meta" : { "definition" : { - "val" : "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence", - "xrefs" : [ ] + "val" : "A peramorphic growth quality which is due to a delayed offset.", + "xrefs" : [ "PATOC:mh" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this fragility inheres in this vase" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "inheres_in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this red color inheres in this apple" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "inheres in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "A dependent inheres in its bearer at all times for which the dependent exists." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "inheres in" + "type" : "CLASS", + "lbl" : "hypermorphic growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000466", + "id" : "http://purl.obolibrary.org/obo/PATO_0000421", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -3490,269 +3499,227 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete none" + "lbl" : "obsolete nutritional value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001315", + "id" : "http://purl.obolibrary.org/obo/PATO_0001752", "meta" : { "definition" : { - "val" : "A temperature which is increased by a low degree.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth.", + "xrefs" : [ "PATOC:mh" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hyperplastic growth", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001749" } ] }, "type" : "CLASS", - "lbl" : "mild increased temperature" + "lbl" : "peramorphic growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001799", + "id" : "http://purl.obolibrary.org/obo/PATO_0000424", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's exhibiting disturbance of its smoothness or regularity.", - "xrefs" : [ ".thefreedictionary.com:.thefreedictionary.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "ruffled" + "lbl" : "obsolete occurence value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000465", + "id" : "http://purl.obolibrary.org/obo/PATO_0000423", "meta" : { + "definition" : { + "val" : "A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Prototrophic" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000422" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete marked" + "lbl" : "prototrophic" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002233", + "id" : "http://purl.obolibrary.org/obo/PATO_0001753", "meta" : { "definition" : { - "val" : "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.", - "xrefs" : [ ] + "val" : "A peramorphic growth quality which is due to an increased rate.", + "xrefs" : [ "PATOC:mh" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "consumes" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "has input" + "type" : "CLASS", + "lbl" : "accelerated growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000468", + "id" : "http://purl.obolibrary.org/obo/PATO_0000426", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001997" + "val" : "http://purl.obolibrary.org/obo/PATO_0000690" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001796", + "id" : "http://purl.obolibrary.org/obo/PATO_0001758", "meta" : { "definition" : { - "val" : "A coiling which is relatively low.", + "val" : "A conductivity quality inhering in motor and sensory nerves by virtue of the bearer's ability to convey electricity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low coiling", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001795" } ] }, "type" : "CLASS", - "lbl" : "decreased coiling" + "lbl" : "nerve conductivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001312", + "id" : "http://purl.obolibrary.org/obo/PATO_0001759", "meta" : { "definition" : { - "val" : "A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A composition quality inhering in a bearer by virtue of the bearer's containing granules.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high duration of temperature", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001311" } ] }, "type" : "CLASS", - "lbl" : "increased duration of temperature" + "lbl" : "granular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001797", + "id" : "http://purl.obolibrary.org/obo/PATO_0000425", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001883" - } ] - }, - "type" : "CLASS" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001313", - "meta" : { - "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature.", - "xrefs" : [ "PATO:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001314" } ] }, "type" : "CLASS", - "lbl" : "invariant temperature" + "lbl" : "obsolete continual" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000467", + "id" : "http://purl.obolibrary.org/obo/PATO_0001756", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's existence.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A conductivity quality inhering in a bearer by virtue of the bearer's disposition to spontaneous transfer of thermal energy from a region of higher temperature to a region of lower temperature.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Heat_conduction" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#absent_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "present in organism", + "pred" : "hasExactSynonym", + "val" : "thermal conduction", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000462" } ] }, "type" : "CLASS", - "lbl" : "present" + "lbl" : "heat conductivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001318", + "id" : "http://purl.obolibrary.org/obo/PATO_0000428", "meta" : { "definition" : { - "val" : "A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances.", + "xrefs" : [ "PATO:MAH", "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001319" + "val" : "http://purl.obolibrary.org/obo/PATO_0000427" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "indiscriminate" + "lbl" : "sporadic" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000056", + "id" : "http://purl.obolibrary.org/obo/PATO_0000427", "meta" : { "definition" : { - "val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process", - "xrefs" : [ ] + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this investigator participates in this investigation" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this input material (or this output material) participates in this process" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "participates in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "participates_in" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this blood clot participates in this blood coagulation" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000428" } ] }, - "type" : "PROPERTY", - "lbl" : "participates in" + "type" : "CLASS", + "lbl" : "recurrent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000469", + "id" : "http://purl.obolibrary.org/obo/PATO_0001757", "meta" : { + "definition" : { + "val" : "A conductivity quality inhering in a bearer by virtue of the bearer's ability to convey electricity.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Electrical_conduction" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete high" + "lbl" : "electrical conductivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001319", + "id" : "http://purl.obolibrary.org/obo/PATO_0001750", "meta" : { "definition" : { - "val" : "A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A paedomorphic growth quality which is due to a delayed onset.", + "xrefs" : [ "PATOC:mh" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001318" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "discriminate" + "lbl" : "postdisplaced growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001316", + "id" : "http://purl.obolibrary.org/obo/PATO_0001751", "meta" : { "definition" : { - "val" : "A temperature which is increased by a medium degree.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A paedomorphic growth quality which is due to an ealier offset.", + "xrefs" : [ "PATOC:mh" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -3761,311 +3728,264 @@ } ] }, "type" : "CLASS", - "lbl" : "moderate increased temperature" + "lbl" : "progenetic growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001317", + "id" : "http://purl.obolibrary.org/obo/PATO_0000420", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000470" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/pato#similar_in_magnitude_relative_to", "meta" : { "definition" : { - "val" : "A temperature which is increased by a high degree.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "severe increased temperature" + "type" : "PROPERTY", + "lbl" : "similar_in_magnitude_relative_to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000053", + "id" : "http://purl.obolibrary.org/obo/PATO_0000433", "meta" : { "definition" : { - "val" : "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", - "xrefs" : [ ] + "val" : "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a father.", + "xrefs" : [ "WordNet:WordNet" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this vase is bearer of this fragility" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "is bearer of" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "bearer_of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "bearer of" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this apple is bearer of this red color" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "bearer of" + "type" : "CLASS", + "lbl" : "obsolete paternal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001790", + "id" : "http://purl.obolibrary.org/obo/PATO_0001765", "meta" : { "definition" : { - "val" : "A density which is lower relative to the normal or average.", + "val" : "An age which is low relative to the normal or average.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low density", + "val" : "low age", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001788" + "val" : "http://purl.obolibrary.org/obo/PATO_0001764" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased mass density" + "lbl" : "decreased age" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001791", + "id" : "http://purl.obolibrary.org/obo/PATO_0001766", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being confined or restricted to multiple locations.", + "val" : "A cellular quality inhering in a cell by virtue of its anisotropic intracellular organization.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "multi-focal", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", + "val" : "PATO:0001769" } ] }, "type" : "CLASS", - "lbl" : "multi-localised" + "lbl" : "obsolete cellular polarity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000460", + "id" : "http://purl.obolibrary.org/obo/PATO_0000432", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's deviation from normal or average.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#abnormal_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "aberrant", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "atypical", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "atypia", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "defective", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, "type" : "CLASS", - "lbl" : "abnormal" + "lbl" : "obsolete parental type value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000462", + "id" : "http://purl.obolibrary.org/obo/PATO_0001763", "meta" : { - "definition" : { - "val" : "A quality denoting the lack of an entity.", - "xrefs" : [ "thefreedictionary.:thefreedictionary." ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#absent_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "absent from organism", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "absence", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000467" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "See documentation here: http://code.google.com/p/phenotype-ontologies/wiki/ModelingOfAbsence" + "val" : "http://purl.obolibrary.org/obo/PATO_0001760" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001996" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "absent" + "lbl" : "female semi-sterile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001794", + "id" : "http://purl.obolibrary.org/obo/PATO_0000435", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being wound in a continuous series of loops.", - "xrefs" : [ "Online_Dictionary:Online_Dictionary" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "coiling" + "lbl" : "obsolete pattern value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001310", + "id" : "http://purl.obolibrary.org/obo/PATO_0001764", "meta" : { "definition" : { - "val" : "A duration quality of a process inhering in a bearer by virtue of the bearer's duration of exhibition of thermal energy.", + "val" : "An age which is high relative to the normal or average.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high age", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "TODO: obsolete? I don't know what this means." + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001765" } ] }, "type" : "CLASS", - "lbl" : "duration of temperature" + "lbl" : "increased age" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001795", + "id" : "http://purl.obolibrary.org/obo/PATO_0000434", "meta" : { "definition" : { - "val" : "A coiling which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a mother.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high coiling", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001796" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "increased coiling" + "lbl" : "obsolete maternal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000461", + "id" : "http://purl.obolibrary.org/obo/PATO_0001769", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an axis.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#abnormal_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "average", - "xrefs" : [ ] + "val" : "cellular polarity", + "xrefs" : [ "PATOC:MAH" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "positional polarity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000437", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000460" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal" + "lbl" : "obsolete sleep pattern value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001311", + "id" : "http://purl.obolibrary.org/obo/PATO_0000436", "meta" : { - "definition" : { - "val" : "A duration of temperature which is lesser relative to the normal or average enduring or continuing in time.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001312" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "decreased duration of temperature" + "lbl" : "obsolete concrete" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001792", + "id" : "http://purl.obolibrary.org/obo/PATO_0000439", "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located on left side of from the a another entity.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "left side of" + "lbl" : "obsolete perseverative" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000464", + "id" : "http://purl.obolibrary.org/obo/PATO_0001767", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of not being clearly visible.", - "xrefs" : [ "thefreedictionary:thefreedictionary" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "faint", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000463" } ] }, "type" : "CLASS", - "lbl" : "inconspicuous" + "lbl" : "semi-fertile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000463", + "id" : "http://purl.obolibrary.org/obo/PATO_0000438", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of being clearly visible.", - "xrefs" : [ "thefreedictionary:thefreedictionary" ] + "val" : "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation.", + "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "uniform", + "xrefs" : [ ] + }, { "pred" : "hasRelatedSynonym", - "val" : "distinct", + "val" : "constant", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -4073,63 +3993,57 @@ "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000464" + "val" : "http://purl.obolibrary.org/obo/PATO_0001227" } ] }, "type" : "CLASS", - "lbl" : "conspicuous" + "lbl" : "invariant" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001793", + "id" : "http://purl.obolibrary.org/obo/PATO_0001768", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located on right side of a another entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A viability quality inhering in a bearer or a population by virtue of some of it's members' inability to survive to reproduce.", + "xrefs" : [ "PATOC:CVC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "right side of" + "lbl" : "semi-lethal (sensu genetics)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000477", + "id" : "http://purl.obolibrary.org/obo/PATO_0001761", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001762" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete good value" + "lbl" : "male semi-fertile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001325", + "id" : "http://purl.obolibrary.org/obo/PATO_0001762", "meta" : { - "definition" : { - "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's having equal proportion around a central point or axis.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "centric", - "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0002-2908-3327" ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001761" } ] }, "type" : "CLASS", - "lbl" : "radial symmetry" + "lbl" : "male semi-sterile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001326", + "id" : "http://purl.obolibrary.org/obo/PATO_0000431", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" @@ -4139,22 +4053,23 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete left-right symmetry" + "lbl" : "obsolete odor value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000476", + "id" : "http://purl.obolibrary.org/obo/PATO_0001760", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001763" } ] }, "type" : "CLASS", - "lbl" : "obsolete bad value" + "lbl" : "female semi-fertile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000479", + "id" : "http://purl.obolibrary.org/obo/PATO_0000430", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -4165,64 +4080,37 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete regulation value" + "lbl" : "obsolete unique" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001323", + "id" : "http://purl.obolibrary.org/obo/PATO_0001707", "meta" : { "definition" : { - "val" : "A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Area" ] + "val" : "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001706" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "area" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002222", - "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." - }, { - "pred" : "http://purl.org/dc/terms/source", - "val" : "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" - } ] - }, - "type" : "PROPERTY", - "lbl" : "temporally related to" + "lbl" : "behavioural active" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001324", + "id" : "http://purl.obolibrary.org/obo/PATO_0001708", "meta" : { "definition" : { - "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being symmetric about a plane running from its frontal end to its caudal end (head to tail), and has nearly identical right and left halves.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Bilateral_symmetry" ] + "val" : "A size quality inhering in an bearer by virtue of the bearer's extension in one dimension.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "left-right symmetry", + "val" : "1-D size", "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "pennate", - "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0002-2908-3327" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -4230,434 +4118,398 @@ } ] }, "type" : "CLASS", - "lbl" : "bilateral symmetry" + "lbl" : "1-D extent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000478", + "id" : "http://purl.obolibrary.org/obo/PATO_0001705", "meta" : { + "definition" : { + "val" : "A color consisting of violet hue and low brightness.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete poor value" + "lbl" : "dark violet" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001329", + "id" : "http://purl.obolibrary.org/obo/PATO_0001706", "meta" : { "definition" : { - "val" : "A flavor quality inhering in a bearer by virtue of the bearer's having flavour.", + "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's disposition to lack activity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001707" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "flavourful" + "lbl" : "behavioural inactive" }, { - "id" : "http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to", + "id" : "http://purl.obolibrary.org/obo/PATO_0001709", "meta" : { "definition" : { - "val" : "q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A size quality inhering in an bearer by virtue of the bearer's extension in two dimensions.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "2-D size", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "different_in_magnitude_relative_to" + "type" : "CLASS", + "lbl" : "2-D extent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001327", + "id" : "http://purl.obolibrary.org/obo/PATO_0001700", "meta" : { "definition" : { - "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by only one longitudinal plane passing through the axis.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A sleep pattern which has irregular start and/or end times.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001699" } ] }, "type" : "CLASS", - "lbl" : "zygomorphic" + "lbl" : "irregular sleep pattern" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001328", + "id" : "http://purl.obolibrary.org/obo/PATO_0001703", "meta" : { "definition" : { - "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by any longitudinal plane passing through the axis.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A color consisting of violet hue and low saturation.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pale violet", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "actinomorphic" + "lbl" : "desaturated violet" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002217", + "id" : "http://purl.obolibrary.org/obo/PATO_0001704", "meta" : { "definition" : { - "val" : "x actively participates in y if and only if x participates in y and x realizes some active role", - "xrefs" : [ ] + "val" : "A color consisting of violet hue and high brightness.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "agent in" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "actively participates in" + "type" : "CLASS", + "lbl" : "light violet" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002218", + "id" : "http://purl.obolibrary.org/obo/PATO_0001701", "meta" : { "definition" : { - "val" : "x has participant y if and only if x realizes some active role that inheres in y", - "xrefs" : [ ] + "val" : "A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development.", + "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "This may be obsoleted and replaced by the original 'has agent' relation" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has agent" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "'heart development' has active participant some Shh protein" - } ] - }, - "type" : "PROPERTY", - "lbl" : "obsolete has active participant" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000471", - "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001501" } ] }, "type" : "CLASS", - "lbl" : "obsolete low" + "lbl" : "mature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000470", + "id" : "http://purl.obolibrary.org/obo/PATO_0001702", "meta" : { "definition" : { - "val" : "An amount which is relatively high.", + "val" : "A color consisting of violet hue and high saturation.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "present in greater numbers in organism", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "accessory", - "xrefs" : [ ] - }, { "pred" : "hasRelatedSynonym", - "val" : "increased", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "supernumerary", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "increased number", + "val" : "bright violet", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001997" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000650" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000420" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased amount" + "lbl" : "saturated violet" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002213", + "id" : "http://purl.obolibrary.org/obo/PATO_0001718", "meta" : { "definition" : { - "val" : "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", - "xrefs" : [ ] + "val" : "A quality that exists by virtue of the luminous intensity per unit area projected in a given direction.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Luminance" ] }, - "xrefs" : [ { - "val" : "RO:0002213" - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "external" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "positively regulates (process to process)" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002211" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "positively_regulates" + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "positively regulates" + "type" : "CLASS", + "lbl" : "luminance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000473", + "id" : "http://purl.obolibrary.org/obo/PATO_0001719", "meta" : { + "definition" : { + "val" : "A behavioral quality which holds by virtue of whether the bearer exhibits the ability to receive another agentitive entity.", + "xrefs" : [ "PATOC:cjm" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative_quality value" + "lbl" : "receptivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001321", + "id" : "http://purl.obolibrary.org/obo/PATO_0001716", "meta" : { "definition" : { - "val" : "An angle which is 90 degrees to another entity.", - "xrefs" : [ "thesaurus.math:thesaurus.math" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "resilient", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "strong", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "tough", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001362" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "right angle to" + "lbl" : "non-fragile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000472", + "id" : "http://purl.obolibrary.org/obo/PATO_0001717", "meta" : { + "definition" : { + "val" : "A radiation emitting quality which obtains by the intensity of the bearer emitted radiation.", + "xrefs" : [ "PATOC:GVG" ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete quality value" + "lbl" : "radiation emitting intensity quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001322", + "id" : "http://purl.obolibrary.org/obo/PATO_0001710", "meta" : { "definition" : { - "val" : "An angle which is 180 degrees to another entity.", - "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + "val" : "A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "3D size", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "TODO: decide on correct parentage." } ] }, "type" : "CLASS", - "lbl" : "straight angle to" + "lbl" : "3-D extent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000475", + "id" : "http://purl.obolibrary.org/obo/PATO_0001711", "meta" : { + "definition" : { + "val" : "An 1-D extent quality inhering in two-dimensional bearer by virtue of being equal to the distance around it.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Perimeter" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete threshability value" + "lbl" : "perimeter" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002215", + "id" : "http://purl.obolibrary.org/obo/RO_0002630", "meta" : { "definition" : { - "val" : "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. ", + "val" : "Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002578" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://www.ncbi.nlm.nih.gov/pubmed/21208450" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has function realized in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "osteoclast SubClassOf 'capable of' some 'bone resorption'" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", - "val" : "RO_0000053 some (RO_0000054 only ?Y)" + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20123131" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly negatively regulates (process to process)" } ] }, "type" : "PROPERTY", - "lbl" : "capable of" + "lbl" : "directly negatively regulates" }, { - "id" : "http://purl.obolibrary.org/obo/pato#towards", + "id" : "http://purl.obolibrary.org/obo/PATO_0001714", "meta" : { + "definition" : { + "val" : "A diameter which is relatively large.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Relation binding a relational quality or disposition to the relevant type of entity." + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001715" } ] }, - "type" : "PROPERTY", - "lbl" : "towards" + "type" : "CLASS", + "lbl" : "increased diameter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000474", + "id" : "http://purl.obolibrary.org/obo/PATO_0001715", "meta" : { + "definition" : { + "val" : "A diameter which is relatively small.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001714" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete shattering value" + "lbl" : "decreased diameter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001320", + "id" : "http://purl.obolibrary.org/obo/PATO_0001712", "meta" : { "definition" : { - "val" : "A pilosity quality of being covered with short hairs or soft down.", + "val" : "A perimeter which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001713" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "pubescent hair" + "lbl" : "increased perimeter" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002216", + "id" : "http://purl.obolibrary.org/obo/PATO_0001713", "meta" : { "definition" : { - "val" : "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.", - "xrefs" : [ ] + "val" : "A perimeter which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has function in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", - "val" : "RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001712" } ] }, - "type" : "PROPERTY", - "lbl" : "capable of part of" + "type" : "CLASS", + "lbl" : "decreased perimeter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000408", + "id" : "http://purl.obolibrary.org/obo/RO_0002629", "meta" : { + "definition" : { + "val" : "Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly positively regulates (process to process)" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001499" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002578" } ] }, - "type" : "CLASS" + "type" : "PROPERTY", + "lbl" : "directly positively regulates" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000407", + "id" : "http://purl.obolibrary.org/obo/PATO_0001729", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having a horizontal surface without a slope, tilt, or curvature.", - "xrefs" : [ "web:http://www.merriam-webster.com/" ] + "val" : "An organismal quality inhering in a bearer by virtue of the bearer's disposition to lose an entitity by natural process.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "plate-like", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "flat" + "lbl" : "shedability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001738", + "id" : "http://purl.obolibrary.org/obo/PATO_0001727", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking physically interaction with another entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's prevailing tendency, mood, or inclination.", + "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "dissociated", + "pred" : "hasRelatedSynonym", + "val" : "tendency", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -4666,1189 +4518,1375 @@ } ] }, "type" : "CLASS", - "lbl" : "dissociated from" + "lbl" : "disposition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000409", + "id" : "http://purl.obolibrary.org/obo/PATO_0001728", "meta" : { "definition" : { - "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting an equatorial diameter greater than its polar diameter.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A disposition inhering in a multi-cellular organism.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "oblate spheroid", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "oblate" + "lbl" : "multi-cellular organismal disposition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001739", + "id" : "http://purl.obolibrary.org/obo/PATO_0001721", "meta" : { "definition" : { - "val" : "A quality that inheres in an bearer by virtue of how that bearer interacts with radiation.", + "val" : "A behavioral quality which holds by virtue of extent of the receptiveness of a male to female advances.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "radiation quality" + "lbl" : "male receptivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000400", + "id" : "http://purl.obolibrary.org/obo/PATO_0001722", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000186" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001720", + "meta" : { + "definition" : { + "val" : "A behavioral quality which holds by virtue of extent of the receptiveness of a female to male advances.", + "xrefs" : [ "GO:GO" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete morphology value" + "lbl" : "female receptivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000884", + "id" : "http://purl.obolibrary.org/obo/PATO_0001725", "meta" : { + "definition" : { + "val" : "A male receptivity which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high male receptivity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001726" } ] }, "type" : "CLASS", - "lbl" : "obsolete hybrid fertility value" + "lbl" : "increased male receptivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001732", + "id" : "http://purl.obolibrary.org/obo/PATO_0001726", "meta" : { "definition" : { - "val" : "A quality inhering in a plant by virtue of the bearer's disposition to not shed any body part.", + "val" : "A male receptivity which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low male receptivity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001725" } ] }, "type" : "CLASS", - "lbl" : "non-deciduous (any body part)" + "lbl" : "decreased male receptivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000883", + "id" : "http://purl.obolibrary.org/obo/PATO_0001723", "meta" : { + "definition" : { + "val" : "A female receptivity which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high female receptivity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001724" } ] }, "type" : "CLASS", - "lbl" : "obsolete female fertility value" + "lbl" : "increased female receptivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001733", + "id" : "http://purl.obolibrary.org/obo/PATO_0001724", "meta" : { "definition" : { - "val" : "A quality inhering in a plant by virtue of the bearer's disposition to retain foliage.", + "val" : "A female receptivity which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low female receptivity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001723" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "evergreen (plant)" + "lbl" : "decreased female receptivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000402", + "id" : "http://purl.obolibrary.org/obo/GO_0005622", "meta" : { "definition" : { - "val" : "A branchiness quality inhering in a bearer by virtue of the bearer's having branches.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.", + "xrefs" : [ "ISBN:0198506732" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], + "xrefs" : [ { + "val" : "Wikipedia:Intracellular" + } ], "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "nucleocytoplasm", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "protoplast", + "xrefs" : [ "GOC:mah" ] + }, { "pred" : "hasExactSynonym", - "val" : "ramified", + "val" : "internal to cell", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "ramiform", + "val" : "protoplasm", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000414" + "val" : "cellular_component" } ] }, "type" : "CLASS", - "lbl" : "branched" + "lbl" : "intracellular" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002211", + "id" : "http://purl.obolibrary.org/obo/GO_0005623", "meta" : { "definition" : { - "val" : "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.", - "xrefs" : [ ] + "val" : "The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.", + "xrefs" : [ "GOC:go_curators" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], "xrefs" : [ { - "val" : "RO:0002211" + "val" : "NIF_Subcellular:sao1813327414" + }, { + "val" : "Wikipedia:Cell_(biology)" } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", - "val" : "false" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "external" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Tanya Berardini" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Hill" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Regulation precludes parthood; the regulatory process may not be within the regulated process." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "GO" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "regulates" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "val" : "cellular_component" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "regulates (processual)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" + "val" : "cell and encapsulating structures" } ] }, - "type" : "PROPERTY", - "lbl" : "regulates" + "type" : "CLASS", + "lbl" : "cell" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001730", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_89593", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "Craniata", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Craniata " + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002186", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to shed body parts.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A molecular quality that inheres in a molecular entity by virtue of whether or not the molecular entity has a separation of electric charge which leads to the molecule having an electric dipole.", + "xrefs" : [ "PATOC:JH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:22:04Z" } ] }, "type" : "CLASS", - "lbl" : "deciduous (generic)" + "lbl" : "polarity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000886", + "id" : "http://purl.obolibrary.org/obo/PATO_0002187", "meta" : { + "definition" : { + "val" : "Polar polarity is a quality that inheres in a molecular entity when the molecular entity is polar, i.e. does possess an electric dipole.", + "xrefs" : [ "PATOC:JH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:22:49Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute litter size value" + "lbl" : "polar polarity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000401", + "id" : "http://purl.obolibrary.org/obo/PATO_0002184", "meta" : { + "definition" : { + "val" : "Cyclic cyclicity inheres in a molecule when the atoms of the molecule do contain at least one cycle in the atom-atom connection paths (through bonds).", + "xrefs" : [ "PATOC:JH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:20:54Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete shape value" + "lbl" : "cyclic cyclicity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002212", + "id" : "http://purl.obolibrary.org/obo/PATO_0002185", "meta" : { "definition" : { - "val" : "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", - "xrefs" : [ ] + "val" : "Acyclic cyclicity inheres in a molecule when the atoms within the molecule do not contain at least one cycle in the atom-atom connection paths (through the bonds).", + "xrefs" : [ "PATOC:JH" ] }, - "xrefs" : [ { - "val" : "RO:0002212" - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "external" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002211" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "negatively_regulates" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:21:39Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "negatively regulates (process to process)" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, - "type" : "PROPERTY", - "lbl" : "negatively regulates" + "type" : "CLASS", + "lbl" : "acyclic cyclicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000885", + "id" : "http://purl.obolibrary.org/obo/PATO_0002188", "meta" : { + "definition" : { + "val" : "A molecular quality which inheres in a molecular entity when the molecular entity does not possess an electrical dipole.", + "xrefs" : [ "PATOC:JH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:24:01Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete male fertility value" + "lbl" : "nonpolar polarity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001731", + "id" : "http://purl.obolibrary.org/obo/PATO_0002189", "meta" : { "definition" : { - "val" : "A quality inhering in a plant by virtue of the bearer's disposition to shed foliage.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "The ease of distortion of the electron cloud of a molecular entity by an electric field.", + "xrefs" : [ "PATOC:JH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:24:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "deciduous (plant)" + "lbl" : "electric polarizability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000404", + "id" : "http://purl.obolibrary.org/obo/PATO_0002182", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals).", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "helical", + "pred" : "hasExactSynonym", + "val" : "relational molecular quality", "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { - "pred" : "hasRelatedSynonym", - "val" : "helicoid", - "xrefs" : [ ] + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0002061" }, { - "pred" : "hasRelatedSynonym", - "val" : "helicoidal", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "spiral", - "xrefs" : [ ] + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "hasRelatedSynonym", - "val" : "helix-shaped", - "xrefs" : [ ] - } ], + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:18:15Z" + } ] + }, + "type" : "CLASS", + "lbl" : "molecular quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002183", + "meta" : { + "definition" : { + "val" : "A molecular quality that inheres in a molecular entity by virtue of whether that there is a presence of cycles in the connection of the atoms within the molecular entity.", + "xrefs" : [ "PATOC:JH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001363" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000415" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:19:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "coiled" + "lbl" : "cyclicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001736", + "id" : "http://purl.obolibrary.org/obo/PATO_0002180", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of solids.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being free of curves, bends, or angles.", + "xrefs" : [ "merriam-webster:merriam-webster" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "solid", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-02-28T08:54:59Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "solid configuration" + "lbl" : "straight" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000888", + "id" : "http://purl.obolibrary.org/obo/PATO_0002181", "meta" : { "definition" : { - "val" : "A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.", + "val" : "A positional quality inhering in a bearer by virtue the bearer's being changed in position.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000892" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-01T02:56:33Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "female fertile" + "lbl" : "displaced" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000403", + "id" : "http://purl.obolibrary.org/obo/PATO_0002197", "meta" : { "definition" : { - "val" : "A concave quality inhering in a bearer by virtue of the bearer's resembling a groove or fissure.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A quality that describes the power of an atom to attract electrons to itself .", + "xrefs" : [ "PATOC:JH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:31:15Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "cleft" + "lbl" : "electronegativity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001737", + "id" : "http://purl.obolibrary.org/obo/PATO_0002198", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of gases.", + "val" : "A quality inhering in a bearer by virtue of its constitution.", "xrefs" : [ "PATOC:GVG" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "gas", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-15T04:35:27Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "gaseus configuration" + "lbl" : "quality of a substance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000887", + "id" : "http://purl.obolibrary.org/obo/PATO_0002195", "meta" : { + "definition" : { + "val" : "A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge.", + "xrefs" : [ "PATOC:JH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:30:06Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002196" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative litter size value" + "lbl" : "positive charge" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000406", + "id" : "http://purl.obolibrary.org/obo/PATO_0002196", "meta" : { "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge.", + "xrefs" : [ "PATOC:JH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "curled", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "bowing", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002195" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:30:39Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "curved" + "lbl" : "negative charge" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001734", + "id" : "http://purl.obolibrary.org/obo/PATO_0002199", "meta" : { "definition" : { - "val" : "A quality inhering in a plant by virtue of the bearer's disposition to being between evergeen and deciduous.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "A quality which inheres in a substance by virtue of the ease with which the substance can be changed from a solid to a liquid state especially by the application of heat.", + "xrefs" : [ "PATOC:JH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-15T04:36:57Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "semi-deciduous(plant)" + "lbl" : "meltability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000405", + "id" : "http://purl.obolibrary.org/obo/PATO_0002190", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having parallel chains in undulate fashion on the border.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A molecular quality that inheres in a molecular entity by virtue of the presence of a conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone.", + "xrefs" : [ "PATOC:JH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:25:27Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "curled" + "lbl" : "aromaticity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001735", + "id" : "http://purl.obolibrary.org/obo/PATO_0002193", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of liquids.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A molecular quality that inheres in a molecular entity by virtue of the overall electric charge of the molecule, which is due to a comparison between the total number of electrons and the total number of protons.", + "xrefs" : [ "PATOC:JH" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "liquid", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:28:54Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "liquid configuration" + "lbl" : "electric charge" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000889", + "id" : "http://purl.obolibrary.org/obo/PATO_0002194", "meta" : { + "definition" : { + "val" : "A quality which inheres in a molecular entity by virtue of the molecular entity possessing the same amount of electrons overall as protons, thus having an overall neutral charge.", + "xrefs" : [ "PATOC:JH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:29:37Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete cytoplasmic male sterility value" + "lbl" : "neutral charge" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002202", + "id" : "http://purl.obolibrary.org/obo/PATO_0002191", "meta" : { "definition" : { - "val" : "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y", - "xrefs" : [ ] + "val" : "A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone.", + "xrefs" : [ "PATOC:JH" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This is the transitive form of the develops from relation" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002192" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Melissa Haendel" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:25:59Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Terry Meehan" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, - "type" : "PROPERTY", - "lbl" : "develops from" + "type" : "CLASS", + "lbl" : "aromatic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000880", + "id" : "http://purl.obolibrary.org/obo/PATO_0002192", "meta" : { + "definition" : { + "val" : "A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic.", + "xrefs" : [ "PATOC:JH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:26:41Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002191" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete fertility value" + "lbl" : "non-aromatic" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002203", + "id" : "http://purl.obolibrary.org/obo/pato#scalar_slim", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Scalar slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#Subset", + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002148", "meta" : { "definition" : { - "val" : "inverse of develops from", - "xrefs" : [ ] + "val" : "A virulence that is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002147" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Terry Meehan" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-30T05:13:10Z" } ] }, - "type" : "PROPERTY", - "lbl" : "develops into" + "type" : "CLASS", + "lbl" : "increased virulence" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000882", + "id" : "http://purl.obolibrary.org/obo/PATO_0002149", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer exhibiting increased density resulting in exhibiting increased degree of radiopacity (in X-rays).", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-11-03T02:59:08Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete litter size value" + "lbl" : "ivory" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000881", + "id" : "http://purl.obolibrary.org/obo/PATO_0002142", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-28T03:14:54Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete gestational period value" + "lbl" : "bracket" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000419", + "id" : "http://purl.obolibrary.org/obo/PATO_0002143", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-30T02:18:39Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001997" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "sloped downward" }, { - "id" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", + "id" : "http://purl.obolibrary.org/obo/PATO_0002140", "meta" : { "definition" : { - "val" : "q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food.", + "xrefs" : [ "PATOC:VO" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality." + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-26T01:22:27Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002139" } ] }, - "type" : "PROPERTY", - "lbl" : "reciprocal_of" + "type" : "CLASS", + "lbl" : "inedible" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000418", + "id" : "http://purl.obolibrary.org/obo/PATO_0002141", "meta" : { + "definition" : { + "val" : "A density quality which lacks pattern.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-28T01:57:53Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative number value" + "lbl" : "irregular density" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001749", + "id" : "http://purl.obolibrary.org/obo/PATO_0002146", "meta" : { "definition" : { - "val" : "A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth.", - "xrefs" : [ "PATOC:mh" ] + "val" : "A quality inhering in a bearer by virtue of the severity of infectious disease caused by the bearer in a target organism.", + "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0001-8941-3984" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "pedomorphic growth", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "hypoplastic growth", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001752" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-30T05:04:06Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "paedomorphic growth" + "lbl" : "virulence" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0020001", + "id" : "http://purl.obolibrary.org/obo/PATO_0002147", "meta" : { "definition" : { - "val" : "A biological sex quality inhering in an individual based upon genotypic composition that confers the capability for an organism to differentiate male gonads.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A virulence that is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "attenuated", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XY, though abnormal XXY and XYY would also result in a male phenotypic outcome." + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002148" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-30T05:05:02Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "mah" + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "male genotypic sex" + "lbl" : "reduced virulence" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0020002", + "id" : "http://purl.obolibrary.org/obo/PATO_0002144", "meta" : { "definition" : { - "val" : "A biological sex quality inhering in an individual or a population based upon genotypic composition that confers the capability for an organism to differentiate female gonads.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A radiopacity that is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-30T03:30:39Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "mah" + "val" : "george" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XX, though abnormal X0 and XXX would also result in a female phenotypic outcome." + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002145" } ] }, "type" : "CLASS", - "lbl" : "female genotypic sex" + "lbl" : "increased radiopacity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000895", + "id" : "http://purl.obolibrary.org/obo/PATO_0002145", "meta" : { + "definition" : { + "val" : "A radiopacity that is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002144" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-30T03:31:31Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete f1 fertility value" + "lbl" : "decreased radiopacity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000411", + "id" : "http://purl.obolibrary.org/obo/ENVO_01001000", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "An environmental system which is determined by a living organism.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "rounded", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "round", + "val" : "host-associated environment", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "circular" + "lbl" : "environmental system determined by an organism" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001743", + "id" : "http://purl.obolibrary.org/obo/ENVO_01001002", "meta" : { "definition" : { - "val" : "A radioactivity which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An environmental system determined by an animal.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low radioactivity", + "val" : "Metazoan-associated environment", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001742" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "hasBroadSynonym", + "val" : "animal environment", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "decreased radioactivity" + "lbl" : "animal-associated environment" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000410", + "id" : "http://purl.obolibrary.org/obo/PATO_0002159", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001852" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002153", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having leaflets or leaflets-like structures on each side of a common axis.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the front of an organism.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "feather-like", + "pred" : "hasExactSynonym", + "val" : "splayed anterior", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "of a leaf shape", + "pred" : "hasExactSynonym", + "val" : "splayed superior (human torso)", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-11-06T01:14:31Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "pinnate" + "lbl" : "splayed rostral" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001744", + "id" : "http://purl.obolibrary.org/obo/PATO_0002154", "meta" : { "definition" : { - "val" : "A radiation quality inhering in a bearer by virtue of what the bearer receives as a result of being exposed to ionizing radiation.", - "xrefs" : [ "hps:hps" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the abdomen of an organism.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "splayed anterior (human torso)", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "splayed inferior (human head)", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "radiation exposure" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000894", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-11-06T01:14:42Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete cytoplasmic sterility value" + "lbl" : "splayed ventral" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000413", + "id" : "http://purl.obolibrary.org/obo/PATO_0002151", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having an equal-sided rectangular form.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the back or upper surface of an organism.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "splayed posterior (human torso)", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-11-06T01:14:09Z" } ] }, "type" : "CLASS", - "lbl" : "square" + "lbl" : "splayed dorsal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001741", + "id" : "http://purl.obolibrary.org/obo/PATO_0002152", "meta" : { "definition" : { - "val" : "A radiation quality inhering in bearer by virtue of the bearer's exhibiting or being caused by radioactivity.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the side.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "radioactive" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000897", - "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-11-06T01:14:22Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete germ line dependent fertility value" + "lbl" : "splayed lateral" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001742", + "id" : "http://purl.obolibrary.org/obo/PATO_0002157", "meta" : { "definition" : { - "val" : "A radioactivity which is relatively low.", + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being slightly out of its usual or proper place, or position.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high radioactivity", + "val" : "suluxated towards", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "subluxation", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "partial dislocated towards", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001743" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-11-06T03:34:15Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0002160" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "increased radioactivity" + "lbl" : "partially dislocated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000896", + "id" : "http://purl.obolibrary.org/obo/PATO_0002158", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete f2 fertility value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000412", - "meta" : { - "basicPropertyValues" : [ { + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000585" + "val" : "http://purl.obolibrary.org/obo/PATO_0001852" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000415", + "id" : "http://purl.obolibrary.org/obo/PATO_0002155", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals).", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A rotation quality inhering in a bearer by virtue of being rotated towards the middle of an organism.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "internally rotated", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-11-06T02:23:28Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000404" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "uncoiled" + "lbl" : "medially rotated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001747", + "id" : "http://purl.obolibrary.org/obo/PATO_0002156", "meta" : { "definition" : { - "val" : "A radiation exposure quality inhering in an organ by virtue of the multiplication of an equivalent dose to that organ multiplied by the tissue weighting factor for that organ.", - "xrefs" : [ "arpansa:arpansa" ] + "val" : "A rotation quality inhering in a bearer by virtue of being rotated towards the side of an organism.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "externally rotated", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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"subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000890" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-11-26T04:50:43Z" } ] }, "type" : "CLASS", - "lbl" : "male fertile" + "lbl" : "herniated into" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001740", + "id" : "http://purl.obolibrary.org/obo/PATO_0002168", "meta" : { "definition" : { - "val" : "A radiation quality inhering in a radioactive substance by virtue of its transformation (disintegration) rate.", + "val" : "An angular placement quality inhering in a bearer by virtue of the bearer being changed in position in relation to another entity.", "xrefs" : [ "PATOC:GVG" ] }, - 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}, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-12-02T04:10:10Z" } ] }, "type" : "CLASS", - "lbl" : "female sterile" - }, { - "id" : "http://purl.obolibrary.org/obo/pato#has_ratio_quality", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "PROPERTY", - "lbl" : "has_ratio_quality" + "lbl" : "premature closure" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0020000", + "id" : "http://purl.obolibrary.org/obo/PATO_0002167", "meta" : { "definition" : { - "val" : "A biological sex quality inhering in an individual based upon genotypic composition of sex chromosomes.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A protruding quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded out of the surface or boundary of another entity.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - 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"id" : "http://purl.obolibrary.org/obo/PATO_0001754", + "id" : "http://purl.obolibrary.org/obo/PATO_0002161", "meta" : { "definition" : { - "val" : "A peramorphic growth quality which is due to an earlier onset.", - "xrefs" : [ "PATOC:mh" ] + "val" : "Having two horns or horn-shaped branches.", + "xrefs" : [ "mondofacto:mondofacto" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "precocious growth", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "predisplaced growth" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000422", - "meta" : { - "definition" : { - "val" : "A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Auxotrophic" ] - 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"val" : "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a father.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A process in which includes the components of an environmental system as participants.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "environmental system process" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002104", + "meta" : { + "definition" : { + "val" : "A compositional quality inhering in an bearer by virtue of the bearer's infiltration by leukocytes, local edema and accumulation of plasma proteins.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-05T01:37:35Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - 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"definition" : { - "val" : "Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.", - "xrefs" : [ "GOC:bf" ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "regulation of kinase activity" + "lbl" : "obsolete unidirectional" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001718", + "id" : "http://purl.obolibrary.org/obo/PATO_0001698", "meta" : { "definition" : { - "val" : "A quality that exists by virtue of the luminous intensity per unit area projected in a given direction.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Luminance" ] + "val" : "A photosensitivity which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high photosensitivity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001697" } ] }, "type" : "CLASS", - "lbl" : "luminance" + "lbl" : "increased photosensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000869", + "id" : "http://purl.obolibrary.org/obo/PATO_0000368", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -6995,89 +7455,92 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete prepulse inhibition value" + "lbl" : "obsolete towards1" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001719", + "id" : "http://purl.obolibrary.org/obo/PATO_0001691", "meta" : { "definition" : { - "val" : "A behavioral quality which holds by virtue of whether the bearer exhibits the ability to receive another agentitive entity.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This refers to the disposition of the bearer." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001690" } ] }, "type" : "CLASS", - "lbl" : "receptivity" + "lbl" : "non-contractile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001716", + "id" : "http://purl.obolibrary.org/obo/PATO_0001692", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "resilient", - "xrefs" : [ ] + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001472" }, { - "pred" : "hasRelatedSynonym", - "val" : "strong", - "xrefs" : [ ] + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "hasRelatedSynonym", - "val" : "tough", - "xrefs" : [ ] - } ], + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000361", + "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001362" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "non-fragile" + "lbl" : "obsolete gel consistency value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001717", + "id" : "http://purl.obolibrary.org/obo/PATO_0001690", "meta" : { "definition" : { - "val" : "A radiation emitting quality which obtains by the intensity of the bearer emitted radiation.", + "val" : "A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted.", "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This refers to the disposition of the bearer." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001691" } ] }, "type" : "CLASS", - "lbl" : "radiation emitting intensity quality" + "lbl" : "contractile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001710", + "id" : "http://purl.obolibrary.org/obo/PATO_0000360", "meta" : { - "definition" : { - "val" : "A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "3D size", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "3-D extent" + "lbl" : "obsolete consistency value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000862", + "id" : "http://purl.obolibrary.org/obo/PATO_0000363", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7088,37 +7551,55 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete pupillary reflex value" + "lbl" : "obsolete away" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001711", + "id" : "http://purl.obolibrary.org/obo/PATO_0001695", "meta" : { "definition" : { - "val" : "An 1-D extent quality inhering in two-dimensional bearer by virtue of being equal to the distance around it.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Perimeter" ] + "val" : "A fecundity which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high fecundity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001696" } ] }, "type" : "CLASS", - "lbl" : "perimeter" + "lbl" : "increased fecundity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000861", + "id" : "http://purl.obolibrary.org/obo/PATO_0001696", "meta" : { + "definition" : { + "val" : "A fecundity which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low fecundity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001695" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete proboscis extension reflex value" + "lbl" : "decreased fecundity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000864", + "id" : "http://purl.obolibrary.org/obo/PATO_0000362", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7129,45 +7610,35 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete spinal reflex value" + "lbl" : "obsolete direction value" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002630", + "id" : "http://purl.obolibrary.org/obo/PATO_0001693", "meta" : { "definition" : { - "val" : "Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2.", - "xrefs" : [ ] + "val" : "A viscosity which relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high viscosity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "directly negatively regulates (process to process)" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002578" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - } ] - }, - "type" : "PROPERTY", - "lbl" : "directly negatively regulates" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000863", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001694" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete righting reflex value" + "lbl" : "increased viscosity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001714", + "id" : "http://purl.obolibrary.org/obo/PATO_0000365", "meta" : { "definition" : { - "val" : "A diameter which is relatively large.", + "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], @@ -7176,26 +7647,36 @@ "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001715" + "val" : "http://purl.obolibrary.org/obo/PATO_0000370" } ] }, "type" : "CLASS", - "lbl" : "increased diameter" + "lbl" : "down" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000866", + "id" : "http://purl.obolibrary.org/obo/PATO_0001694", "meta" : { + "definition" : { + "val" : "A viscosity which relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low viscosity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001693" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete suckling reflex value" + "lbl" : "decreased viscosity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000865", + "id" : "http://purl.obolibrary.org/obo/PATO_0000364", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -7206,45 +7687,35 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete startle reflex value" + "lbl" : "obsolete bi-directional" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001715", + "id" : "http://purl.obolibrary.org/obo/PATO_0000378", "meta" : { - "definition" : { - "val" : "A diameter which is relatively small.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001714" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased diameter" + "lbl" : "obsolete absolute frequency value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001712", + "id" : "http://purl.obolibrary.org/obo/PATO_0000377", "meta" : { - "definition" : { - "val" : "A perimeter which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001713" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "increased perimeter" + "lbl" : "obsolete frequency value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000868", + "id" : "http://purl.obolibrary.org/obo/PATO_0000379", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7255,12 +7726,12 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete vibrissae reflex value" + "lbl" : "obsolete relative frequency value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001713", + "id" : "http://purl.obolibrary.org/obo/PATO_0000370", "meta" : { "definition" : { - "val" : "A perimeter which is relatively low.", + "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], @@ -7269,26 +7740,26 @@ "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001712" + "val" : "http://purl.obolibrary.org/obo/PATO_0000365" } ] }, "type" : "CLASS", - "lbl" : "decreased perimeter" + "lbl" : "up" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000867", + "id" : "http://purl.obolibrary.org/obo/PATO_0000372", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete swallowing reflex value" + "lbl" : "obsolete absolute distance value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000860", + "id" : "http://purl.obolibrary.org/obo/PATO_0000371", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7299,154 +7770,102 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete postural reflex value" + "lbl" : "obsolete distance value" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0051174", + "id" : "http://purl.obolibrary.org/obo/GO_0043227", "meta" : { "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.", - "xrefs" : [ "GOC:ai" ] + "val" : "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.", + "xrefs" : [ "GOC:go_curators" ] }, + "xrefs" : [ { + "val" : "NIF_Subcellular:sao414196390" + } ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "regulation of phosphorus metabolism", + "val" : "membrane-enclosed organelle", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "cellular_component" } ] }, "type" : "CLASS", - "lbl" : "regulation of phosphorus metabolic process" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002629", - "meta" : { - "definition" : { - "val" : "Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.", - "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "directly positively regulates (process to process)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002578" - } ] - }, - "type" : "PROPERTY", - "lbl" : "directly positively regulates" + "lbl" : "membrane-bounded organelle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001729", + "id" : "http://purl.obolibrary.org/obo/PATO_0000374", "meta" : { "definition" : { - "val" : "An organismal quality inhering in a bearer by virtue of the bearer's disposition to lose an entitity by natural process.", + "val" : "A distance which is greater relative to the normal or average.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "shedability" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001727", - "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's prevailing tendency, mood, or inclination.", - "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "tendency", + "val" : "long distance", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000375" } ] }, "type" : "CLASS", - "lbl" : "disposition" + "lbl" : "increased distance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001728", + "id" : "http://purl.obolibrary.org/obo/PATO_0000373", "meta" : { - "definition" : { - "val" : "A disposition inhering in a multi-cellular organism.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "multi-cellular organismal disposition" + "lbl" : "obsolete relative distance value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001721", + "id" : "http://purl.obolibrary.org/obo/GO_0043226", "meta" : { "definition" : { - "val" : "A behavioral quality which holds by virtue of extent of the receptiveness of a male to female advances.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. 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"lbl" : "obsolete irritable" + "lbl" : "obsolete flavor value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001720", + "id" : "http://purl.obolibrary.org/obo/PATO_0000375", "meta" : { "definition" : { - "val" : "A behavioral quality which holds by virtue of extent of the receptiveness of a female to male advances.", - "xrefs" : [ "GO:GO" ] + "val" : "A distance which is lesser relative to the normal or average.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "short distance", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000374" } ] }, "type" : "CLASS", - 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}, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000381" } ] }, "type" : "CLASS", - "lbl" : "increased female receptivity" + "lbl" : "increased frequency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000879", + "id" : "http://purl.obolibrary.org/obo/PATO_0000383", "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.", + "xrefs" : [ "MGED:MGED" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete fecundity value" + "lbl" : "female" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001724", + "id" : "http://purl.obolibrary.org/obo/PATO_0000382", "meta" : { - "definition" : { - "val" : "A female receptivity which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low female receptivity", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001723" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "decreased female receptivity" + "lbl" : "obsolete gender value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000878", + "id" : "http://purl.obolibrary.org/obo/PATO_0000385", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -7629,112 +8069,155 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative respiratory rate value" + "lbl" : "obsolete hardness value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000871", + "id" : "http://purl.obolibrary.org/obo/PATO_0000384", "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.", + "xrefs" : [ "MGED:MGED" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete aggressive" + "lbl" : "male" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000870", + "id" : "http://purl.obolibrary.org/obo/PATO_0000387", "meta" : { + "definition" : { + "val" : "A hardness quality of giving little resistance to pressure.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000386" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative neurobehavioral function value" + "lbl" : "soft" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040023", + "id" : "http://purl.obolibrary.org/obo/PATO_0000386", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body.", - "xrefs" : [ "https://en.wiktionary.org/wiki/distomedial" ] + "val" : "A hardness quality of being rigid and resistant to pressure.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "distomedial", + "pred" : "hasRelatedSynonym", + "val" : "tough", "xrefs" : [ ] }, { - "pred" : "hasExactSynonym", - "val" : "disto-medial orientation", + "pred" : "hasRelatedSynonym", + "val" : "impenetrable", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "firm", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.org/dc/elements/1.1/date", - "val" : "2018-11-19T21:54:33Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000387" } ] }, "type" : "CLASS", - "lbl" : "distomedial orientation" + "lbl" : "hard" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000804", + "id" : "http://purl.obolibrary.org/obo/IAO_0000412", "meta" : { + "definition" : { + "val" : "For external terms/classes, the ontology from which the term was imported", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "imported from" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Melanie Courtot" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" } ] }, - "type" : "CLASS", - "lbl" : "obsolete motor performance value" + "type" : "PROPERTY", + "lbl" : "imported from" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000803", + "id" : "http://purl.obolibrary.org/obo/UBPROP_0000001", "meta" : { + "definition" : { + "val" : "An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class.", + "xrefs" : [ "https://orcid.org/0000-0002-6601-2165" ] + }, + "xrefs" : [ { + "val" : "UBPROP:0000001" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This annotation property may be replaced with an annotation property from an external ontology such as IAO" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "external_definition" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" + } ] + }, + "type" : "PROPERTY", + "lbl" : "external_definition" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000410", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Hard to give a definition for. Intuitively a \"natural kind\" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf" } ] }, + "type" : "INDIVIDUAL", + "lbl" : "universal" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_8287", "type" : "CLASS", - "lbl" : "obsolete tactile response value" + "lbl" : "Sarcopterygii" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040024", + "id" : "http://purl.obolibrary.org/obo/pato#has_dividend_quality", "meta" : { - "definition" : { - "val" : "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism.", - "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] - }, - "synonyms" : [ { - "pred" : "hasBroadSynonym", - "val" : "paired", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, - "type" : "CLASS", - "lbl" : "bilaterally paired" + "type" : "PROPERTY", + "lbl" : "has_dividend_quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000806", + "id" : "http://purl.obolibrary.org/obo/PATO_0000399", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7745,26 +8228,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete olfactory value" + "lbl" : "obsolete life span value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040021", + "id" : "http://purl.obolibrary.org/obo/PATO_0000392", "meta" : { - "definition" : { - "val" : "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism..", - "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "unpaired" + "lbl" : "obsolete limited" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000805", + "id" : "http://purl.obolibrary.org/obo/PATO_0000391", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -7775,29 +8254,24 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete auditory value" + "lbl" : "obsolete intense" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040022", + "id" : "http://purl.obolibrary.org/obo/PATO_0000394", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape.", - "xrefs" : [ ] + "val" : "An intensity which is less than moderate in type or degree or effect or force.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/date", - "val" : "2018-11-19T21:49:07Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, "type" : "CLASS", - "lbl" : "flared" + "lbl" : "mild intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000808", + "id" : "http://purl.obolibrary.org/obo/PATO_0000393", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -7808,39 +8282,39 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete reflex value" + "lbl" : "obsolete maximal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000807", + "id" : "http://purl.obolibrary.org/obo/PATO_0000396", "meta" : { + "definition" : { + "val" : "An intensity which is extremely bad or unpleasant in type or degree or effect or force.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete proprioreception value" + "lbl" : "severe intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040025", + "id" : "http://purl.obolibrary.org/obo/PATO_0000395", "meta" : { "definition" : { - "val" : "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present.", - "xrefs" : [ "NCIT:C3824" ] + "val" : "An intensity which is less than extreme in type or degree or effect or force.", + "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "lesioned" + "lbl" : "moderate intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000809", + "id" : "http://purl.obolibrary.org/obo/PATO_0000398", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7851,208 +8325,211 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete taste value" + "lbl" : "obsolete vigorous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040026", + "id" : "http://purl.obolibrary.org/obo/PATO_0000397", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being marked by interruptions or gaps.", - "xrefs" : [ ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "structurally interrupted", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term is intended for use for terms such as MP:0010461 discontinuous pulmonary artery and MP:0004157 interrupted aortic arch." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "http://orcid.org/0000-0001-5208-3432" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "structurally discontinuous" + "lbl" : "obsolete slight" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000800", + "id" : "http://purl.obolibrary.org/obo/IAO_0000424", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "definition" : { + "val" : "A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "ObjectProperty: RO_0002104\nLabel: has plasma membrane part\nAnnotations: IAO_0000424 \"http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.org/obo/owl/GO#GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)\"\n" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "expand expression to" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "obsolete muscle strength value" + "type" : "PROPERTY", + "lbl" : "expand expression to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000802", + "id" : "http://purl.obolibrary.org/obo/IAO_0000423", "meta" : { + "definition" : { + "val" : "Terms with this status should eventually replaced with a term from another ontology.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "group:OBI" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Alan Ruttenberg" } ] }, - "type" : "CLASS", - "lbl" : "obsolete sensory function value" + "type" : "INDIVIDUAL", + "lbl" : "to be replaced with external ontology term" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000801", + "id" : "http://purl.obolibrary.org/obo/IAO_0000420", "meta" : { + "definition" : { + "val" : "A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "\"definitions\", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal." }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Alan Ruttenberg" } ] }, - "type" : "CLASS", - "lbl" : "obsolete motor function value" + "type" : "INDIVIDUAL", + "lbl" : "defined class" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016740", + "id" : "http://purl.obolibrary.org/obo/IAO_0000421", "meta" : { "definition" : { - "val" : "Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.", - "xrefs" : [ "ISBN:0198506732" ] + "val" : "A named class expression is a logical expression that is given a name. The name can be used in place of the expression.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], - "xrefs" : [ { - "val" : "Reactome:R-HSA-5668414" - }, { - "val" : "Reactome:R-HSA-8868783" - }, { - "val" : "Reactome:R-HSA-1483089" - }, { - "val" : "Reactome:R-HSA-6787403" - }, { - "val" : "Reactome:R-HSA-1483186" - }, { - "val" : "EC:2" - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "molecular_function" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions" } ] }, - "type" : "CLASS", - "lbl" : "transferase activity" + "type" : "INDIVIDUAL", + "lbl" : "named class expression" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040020", + "id" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "type" : "PROPERTY", + "lbl" : "has_alternative_id" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000390", "meta" : { - "definition" : { - "val" : "Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal.", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.org/dc/elements/1.1/date", - "val" : "2018-11-16T22:52:49Z" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "spayed female" + "lbl" : "obsolete extreme" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000815", + "id" : "http://purl.obolibrary.org/obo/PATO_0000323", "meta" : { + "definition" : { + "val" : "An achromatic color of maximum brightness; the color of objects that reflect nearly all light of all visible wavelengths.", + "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "whitish", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute odor acuity value" + "lbl" : "white" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000814", + "id" : "http://purl.obolibrary.org/obo/PATO_0001655", "meta" : { + "definition" : { + "val" : "A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per liter of solution.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Osmolarity" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete taste acuity value" + "lbl" : "osmolarity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000817", + "id" : "http://purl.obolibrary.org/obo/PATO_0000322", "meta" : { + "definition" : { + "val" : "A color hue with high wavelength of the long-wave end of the visible spectrum, evoked in the human observer by radiant energy with wavelengths of approximately 630 to 750 nanometers.", + "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete anosmia" + "lbl" : "red" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000816", + "id" : "http://purl.obolibrary.org/obo/PATO_0001656", "meta" : { + "definition" : { + "val" : "A osmolarity which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low osmolarity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001657" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative odor acuity value" + "lbl" : "decreased osmolarity" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0005622", + "id" : "http://purl.obolibrary.org/obo/PATO_0001653", "meta" : { "definition" : { - "val" : "The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.", - "xrefs" : [ "ISBN:0198506732" ] + "val" : "An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], - "xrefs" : [ { - "val" : "Wikipedia:Intracellular" - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "nucleocytoplasm", - "xrefs" : [ "GOC:mah" ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "protoplast", - "xrefs" : [ "GOC:mah" ] - }, { "pred" : "hasExactSynonym", - "val" : "internal to cell", + "val" : "aligned", "xrefs" : [ ] }, { - "pred" : "hasExactSynonym", - "val" : "protoplasm", + "pred" : "hasRelatedSynonym", + "val" : "aligned to", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001654" } ] }, "type" : "CLASS", - "lbl" : "intracellular" + "lbl" : "aligned with" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000819", + "id" : "http://purl.obolibrary.org/obo/PATO_0000325", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -8063,71 +8540,89 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete quantity" + "lbl" : "obsolete bright" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0005623", + "id" : "http://purl.obolibrary.org/obo/PATO_0001654", "meta" : { "definition" : { - "val" : "The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.", - "xrefs" : [ "GOC:go_curators" ] + "val" : "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], - "xrefs" : [ { - "val" : "NIF_Subcellular:sao1813327414" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "misaligned", + "xrefs" : [ ] }, { - "val" : "Wikipedia:Cell_(biology)" + "pred" : "hasExactSynonym", + "val" : "unaligned with", + "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - 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"id" : "http://purl.obolibrary.org/obo/PATO_0040013", + "id" : "http://purl.obolibrary.org/obo/PATO_0000330", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially.", - "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency.", + "xrefs" : [ "PATOC:GVG" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "dorsomedially directed", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - 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"val" : "The ease of distortion of the electron cloud of a molecular entity by an electric field.", - "xrefs" : [ "PATOC:JH" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface.", + "xrefs" : [ "Trailillustrated:Trailillustrated" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-10T03:24:47Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "electric polarizability" + "lbl" : "elevation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015029", + "id" : "http://purl.obolibrary.org/obo/PATO_0000357", "meta" : { - "definition" : { - "val" : "A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being transiently dispersed in a solid, liquid, or gas before settling due to gravity or centrifugal forces.", - "xrefs" : [ "ENVO:pb", "https://github.com/pato-ontology/pato/issues/91" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "quality of a suspension" + "lbl" : "obsolete protein concentration value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002182", + "id" : "http://purl.obolibrary.org/obo/PATO_0000359", "meta" : { - "definition" : { - "val" : "A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc.", - "xrefs" : [ "PATOC:GVG" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "relational molecular quality", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0002061" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-10T03:18:15Z" } ] }, "type" : "CLASS", - "lbl" : "molecular quality" + "lbl" : "obsolete water content value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002183", + "id" : "http://purl.obolibrary.org/obo/PATO_0001680", "meta" : { "definition" : { - "val" : "A molecular quality that inheres in a molecular entity by virtue of whether that there is a presence of cycles in the connection of the atoms within the molecular entity.", - "xrefs" : [ "PATOC:JH" ] + "val" : "A volume quality inhering in a homogeneous substance containing 6.02 x 1023 atoms or molecules by virtue of the amount of 3-dimensional space it occupies.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Molar_volume" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-10T03:19:46Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cyclicity" + "lbl" : "molar volume" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002180", + "id" : "http://purl.obolibrary.org/obo/PATO_0001681", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being free of curves, bends, or angles.", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "A physical quality that inheres in a homogeneous substance containing 6.02 x 1023 atoms or molecules.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Molar_mass" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "molar mass" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000350", + "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-28T08:54:59Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "straight" + "lbl" : "obsolete electrolyte composition value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002181", + "id" : "http://purl.obolibrary.org/obo/PATO_0000352", "meta" : { - "definition" : { - "val" : "A positional quality inhering in a bearer by virtue the bearer's being changed in position.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-01T02:56:33Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "displaced" + "lbl" : "obsolete metabolite composition value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015012", + "id" : "http://purl.obolibrary.org/obo/PATO_0001684", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of roughly equal proportions of positively and negatively charged particles, having neither a defined volume nor defined shape, having internal magnetic fields, and being electrically conductive.", - "xrefs" : [ "https://github.com/pato-ontology/pato/issues/88" ] + "val" : "A magnetism which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low magnetism", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001683" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "quality of a plasma" + "lbl" : "decreased magnetism" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015013", + "id" : "http://purl.obolibrary.org/obo/PATO_0000351", "meta" : { - "definition" : { - "val" : "The degree to which the bearer is exposed to visible light.", - "xrefs" : [ "https://github.com/pato-ontology/pato/issues/89" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "degree of illumination" + "lbl" : "obsolete macromolecular composition value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015010", + "id" : "http://purl.obolibrary.org/obo/PATO_0001685", "meta" : { "definition" : { - "val" : "An increase in humidity.", - "xrefs" : [ "https://github.com/pato-ontology/pato/issues/90" ] + "val" : "A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "humid", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015011" + "val" : "http://purl.obolibrary.org/obo/PATO_0001686" } ] }, "type" : "CLASS", - "lbl" : "increased humidity" + "lbl" : "magnetic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015011", + "id" : "http://purl.obolibrary.org/obo/PATO_0001682", "meta" : { "definition" : { - "val" : "An decrease in humidity.", - "xrefs" : [ "https://github.com/pato-ontology/pato/issues/90" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to exert an attractive or repulsive force on other entities.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Magnetism" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "magnetism" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000354", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015010" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased humidity" + "lbl" : "obsolete protein composition value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015016", + "id" : "http://purl.obolibrary.org/obo/PATO_0000353", "meta" : { - "definition" : { - "val" : "Having a shape or form that resembles a step of a stairway (e.g., a ledge or offset margin).", - "xrefs" : [ "http://www.thefreedictionary.com/stepped", "https://github.com/pato-ontology/pato/issues/82" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "stepped" + "lbl" : "obsolete secondary product composition value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015017", + "id" : "http://purl.obolibrary.org/obo/PATO_0001683", "meta" : { "definition" : { - "val" : "A physical quality inhering in an entity by virtue of a portion of the bearer's molecular or polymolecular constituents present in one phase being dispersed in a portion of the bearer's constituents present in another phase.", - "xrefs" : [ "ENVO:pb", "https://github.com/pato-ontology/pato/issues/91", "https://goldbook.iupac.org/html/C/C01172.html" ] + "val" : "A magnetism which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high magnetism", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001684" } ] }, "type" : "CLASS", - "lbl" : "quality of a colloid" + "lbl" : "increased magnetism" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015014", + "id" : "http://purl.obolibrary.org/obo/PATO_0001619", "meta" : { "definition" : { - "val" : "An increase in illumination.", - "xrefs" : [ "https://github.com/pato-ontology/pato/issues/89" ] + "val" : "A tonicity which is relatively low.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "illuminated", + "pred" : "hasExactSynonym", + "val" : "low tonicity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -9372,407 +9899,464 @@ "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015015" + "val" : "http://purl.obolibrary.org/obo/PATO_0001618" } ] }, "type" : "CLASS", - "lbl" : "increased degree of illumination" + "lbl" : "decreased tonicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015015", + "id" : "http://purl.obolibrary.org/obo/PATO_0001617", "meta" : { "definition" : { - "val" : "An decrease in illumination.", - "xrefs" : [ "https://github.com/pato-ontology/pato/issues/89" ] + "val" : "A morphological quality inhering in a bearer by virtue of the bearer's being distorted in form.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "disfigured", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "distorted", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015014" } ] }, "type" : "CLASS", - "lbl" : "decreased degree of illumination" + "lbl" : "deformed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002197", + "id" : "http://purl.obolibrary.org/obo/PATO_0001618", "meta" : { "definition" : { - "val" : "A quality that describes the power of an atom to attract electrons to itself .", - "xrefs" : [ "PATOC:JH" ] + "val" : "A tonicity which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high tonicity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-10T03:31:15Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001619" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "electronegativity" + "lbl" : "increased tonicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002198", + "id" : "http://purl.obolibrary.org/obo/PATO_0001611", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of its constitution.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits color variation or change.", + "xrefs" : [ "PATO:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-15T04:35:27Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "quality of a substance" + "lbl" : "variability of color" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002195", + "id" : "http://purl.obolibrary.org/obo/PATO_0001612", "meta" : { "definition" : { - "val" : "A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge.", - "xrefs" : [ "PATOC:JH" ] + "val" : "A variability of color which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high variability of color", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-10T03:30:06Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002196" + "val" : "http://purl.obolibrary.org/obo/PATO_0001613" } ] }, "type" : "CLASS", - "lbl" : "positive charge" + "lbl" : "increased variability of color" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002196", + "id" : "http://purl.obolibrary.org/obo/PATO_0001610", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000967" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001615", "meta" : { "definition" : { - 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"id" : "http://purl.obolibrary.org/obo/PATO_0002199", + "id" : "http://purl.obolibrary.org/obo/PATO_0001616", "meta" : { - "definition" : { - "val" : "A quality which inheres in a substance by virtue of the ease with which the substance can be changed from a solid to a liquid state especially by the application of heat.", - "xrefs" : [ "PATOC:JH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000700" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-15T04:36:57Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - 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"id" : "http://purl.obolibrary.org/obo/PATO_0002193", + "id" : "http://purl.obolibrary.org/obo/PATO_0001629", "meta" : { "definition" : { - "val" : "A molecular quality that inheres in a molecular entity by virtue of the overall electric charge of the molecule, which is due to a comparison between the total number of electrons and the total number of protons.", - "xrefs" : [ "PATOC:JH" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "clumped", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "clustered", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-10T03:29:37Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001621" } ] }, "type" : "CLASS", - "lbl" : "neutral charge" + "lbl" : "increased turgor" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002191", + "id" : "http://purl.obolibrary.org/obo/PATO_0001623", "meta" : { "definition" : { - "val" : "A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone.", - "xrefs" : [ "PATOC:JH" ] + "val" : "A size quality inhering in a bearer by virtue of a part or parts of the bearer's being decreased in size due to reduction in tissue mass through wasting.", + "xrefs" : [ "Wiikipedia:Wasting", "Wikipedia:Atrophy" ] }, - 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"xrefs" : [ "PATOC:JH" ] + "val" : "A structural quality inhering in a cell or blood vessel or capillary by virtue of the bearer's being in a rigid state of fullness resulting from pressure of the contents against the wall or membrane.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-10T03:26:41Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002191" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "non-aromatic" + "lbl" : "turgor" }, { - "id" : "http://purl.obolibrary.org/obo/pato#scalar_slim", + "id" : "http://purl.obolibrary.org/obo/PATO_0001621", "meta" : { + "definition" : { + "val" : "A turgor which is relatively low.", + "xrefs" : [ "PATO:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low turgor", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - 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"pred" : "hasExactSynonym", - "val" : "plumed", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "feather-shaped", + "pred" : "hasRelatedSynonym", + "val" : "adequacy", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term and children should probably be obsoleted." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "plume-shaped" + "lbl" : "sufficiency" }, { - "id" : "http://purl.obolibrary.org/obo/pato#has_dividend_entity", + "id" : "http://purl.obolibrary.org/obo/PATO_0001627", "meta" : { + "definition" : { + "val" : "A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality.", + "xrefs" : [ "PATO:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "adequate", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001628" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "has_dividend_entity" + "type" : "CLASS", + "lbl" : "sufficient" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0051100", + "id" : "http://purl.obolibrary.org/obo/PATO_0001624", "meta" : { "definition" : { - "val" : "Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.", - "xrefs" : [ "GOC:ai" ] + "val" : "A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s).", + "xrefs" : [ "PATO:MAH" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "dysfunction", + "xrefs" : [ ] + }, { + "pred" : "hasBroadSynonym", + "val" : "dysfunctional", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "impaired", + "xrefs" : [ ] + }, { "pred" : "hasExactSynonym", - 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"lbl" : "negative regulation of binding" + "lbl" : "decreased functionality" }, { - "id" : "http://purl.obolibrary.org/obo/pato#inversely_associated_with", + "id" : "http://purl.obolibrary.org/obo/PATO_0001625", "meta" : { "definition" : { - "val" : "q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear.", - "xrefs" : [ "PATOC:cjm", "Wikipedia:Association_(statistics)" ] + "val" : "A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s).", + "xrefs" : [ "PATO:MAH" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high functionality", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Association is weaker than correlation or proportionality. These relations may be later added to PATO." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-08-26T02:50:24Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001624" } ] }, - "type" : "PROPERTY", - "lbl" : "inversely_associated_with" + "type" : "CLASS", + "lbl" : "increased functionality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002148", + "id" : "http://purl.obolibrary.org/obo/PATO_0000309", "meta" : { "definition" : { - "val" : "A virulence that is relatively high.", + "val" : "An age which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002147" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-30T05:13:10Z" + "val" : "http://purl.obolibrary.org/obo/PATO_0000308" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased virulence" + "lbl" : "young" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002149", + "id" : "http://purl.obolibrary.org/obo/PATO_0000308", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer exhibiting increased density resulting in exhibiting increased degree of radiopacity (in X-rays).", + "val" : "An age which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], @@ -9780,336 +10364,340 @@ "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-11-03T02:59:08Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000309" } ] }, "type" : "CLASS", - "lbl" : "ivory" + "lbl" : "old" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001295", + "id" : "http://purl.obolibrary.org/obo/PATO_0001639", "meta" : { "definition" : { - "val" : "A reflective quality restricted to a particular wavelength.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Typically used for light, but also applied to full EM spectrum." - } ] - }, - "type" : "CLASS", - "lbl" : "albedo" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002142", - "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-28T03:14:54Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001638" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "bracket" + "lbl" : "unnecessary (occurrent)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001296", + "id" : "http://purl.obolibrary.org/obo/PATO_0001633", "meta" : { "definition" : { - "val" : "A scalar optical quality which obtains by the magnitude of the light emitted by the bearer.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear of an organism relative to another entity.", + "xrefs" : [ "PATOC:nw" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "superior (human head)", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "posterior (human torso)", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "luminous flux" + "lbl" : "posterior to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002143", + "id" : "http://purl.obolibrary.org/obo/PATO_0000301", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-30T02:18:39Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "sloped downward" + "lbl" : "obsolete absolute speed value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002140", + "id" : "http://purl.obolibrary.org/obo/PATO_0001634", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food.", - "xrefs" : [ "PATOC:VO" ] + "val" : "A quality of a single physical entity inhering in a bearer by virtue of whether the bearer is essential or indispensable.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002139" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-26T01:22:27Z" } ] }, "type" : "CLASS", - "lbl" : "inedible" + "lbl" : "necessity (continuant)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001293", + "id" : "http://purl.obolibrary.org/obo/PATO_0000300", "meta" : { "definition" : { - "val" : "A scalar EM radiation quality which obtains by the capacity of the bearer to retain radiation.", + "val" : "A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "fixed", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000299" } ] }, "type" : "CLASS", - "lbl" : "absorption quality" + "lbl" : "immobile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002141", + "id" : "http://purl.obolibrary.org/obo/PATO_0001631", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000303", "meta" : { "definition" : { - "val" : "A density quality which lacks pattern.", + "val" : "A speed which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high speed", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "fast speed", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - 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"xrefs" : [ "PATOC:GVG" ] + "val" : "A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001635" } ] }, "type" : "CLASS", - "lbl" : "phosphorescence" + "lbl" : "unnecessary (continuant)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001291", + "id" : "http://purl.obolibrary.org/obo/PATO_0000306", "meta" : { - "definition" : { - "val" : "A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Electromagnetic_radiation" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "electromagnetic (EM) radiation quality" + "lbl" : "obsolete absolute age value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001292", + "id" : "http://purl.obolibrary.org/obo/PATO_0001630", "meta" : { "definition" : { - "val" : "An EM radiation quality that is independent of the EM wavelength range.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "full-spectrum EM radiation quality" + "lbl" : "dispersed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001290", + "id" : "http://purl.obolibrary.org/obo/PATO_0000319", "meta" : { "definition" : { - "val" : "A fluorescence quality inhering in a bearer by virtue of emitting light during exposure to radiation from an external source.", - "xrefs" : [ "web:www.thefreedictionary.com/" ] + "val" : "A color consisting of green and blue hue.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -10118,318 +10706,194 @@ } ] }, "type" : "CLASS", - "lbl" : "fluorescent" + "lbl" : "cyan" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002159", + "id" : "http://purl.obolibrary.org/obo/PATO_0000312", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001852" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - } ] - }, - "type" : "CLASS" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002153", - "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the front of an organism.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "splayed anterior", - "xrefs" : [ ] }, { - "pred" : "hasExactSynonym", - "val" : "splayed superior (human torso)", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-11-06T01:14:31Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "splayed rostral" + "lbl" : "obsolete color intensity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002154", + "id" : "http://purl.obolibrary.org/obo/PATO_0001644", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the abdomen of an organism.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "splayed anterior (human torso)", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "splayed inferior (human head)", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-11-06T01:14:42Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001598" } ] }, - "type" : "CLASS", - "lbl" : "splayed ventral" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002151", + "id" : "http://purl.obolibrary.org/obo/PATO_0001645", "meta" : { "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the back or upper surface of an organism.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary into the surface or boundary of another entity.", + "xrefs" : [ "PATOC:nc" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "splayed posterior (human torso)", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-11-06T01:14:09Z" } ] }, "type" : "CLASS", - "lbl" : "splayed dorsal" + "lbl" : "protruding into" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002152", + "id" : "http://purl.obolibrary.org/obo/PATO_0000311", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the side.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-11-06T01:14:22Z" } ] }, "type" : "CLASS", - "lbl" : "splayed lateral" + "lbl" : "obsolete color hue value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002157", + "id" : "http://purl.obolibrary.org/obo/PATO_0000314", "meta" : { - "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being slightly out of its usual or proper place, or position.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "suluxated towards", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "partial dislocated towards", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "subluxation", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0002160" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-11-06T03:34:15Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "partially dislocated" + "lbl" : "obsolete flourescence value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002158", + "id" : "http://purl.obolibrary.org/obo/PATO_0001642", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001852" + "val" : "http://purl.obolibrary.org/obo/PATO_0001624" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002155", + "id" : "http://purl.obolibrary.org/obo/PATO_0000313", "meta" : { - "definition" : { - "val" : "A rotation quality inhering in a bearer by virtue of being rotated towards the middle of an organism.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "internally rotated", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-11-06T02:23:28Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "medially rotated" + "lbl" : "obsolete color saturation value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002156", + "id" : "http://purl.obolibrary.org/obo/PATO_0001643", "meta" : { "definition" : { - "val" : "A rotation quality inhering in a bearer by virtue of being rotated towards the side of an organism.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "externally rotated", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-11-06T02:25:10Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "laterally rotated" + "lbl" : "stubby" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002150", + "id" : "http://purl.obolibrary.org/obo/PATO_0000316", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the part of the body from which the tail arises.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "splayed inferior (human torso)", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "splayed posterior", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-11-06T01:13:10Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "splayed caudal" + "lbl" : "obsolete relative color value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015001", + "id" : "http://purl.obolibrary.org/obo/PATO_0001648", "meta" : { "definition" : { - "val" : "Absence due to a degenerative process.", - "xrefs" : [ "PATOC:PortlandMeetingFeb2015" ] + "val" : "An 1-D extent quality which is equal to the length of the closed curve of a circle.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#absent_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "circumference" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000315", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "absence due to degeneration" + "lbl" : "obsolete color pattern value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015002", + "id" : "http://purl.obolibrary.org/obo/PATO_0001649", "meta" : { "definition" : { - "val" : "The ability of a process to produce its output.", - "xrefs" : [ "PATOC:PortlandMeetingFeb2015" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the side.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" } ] }, "type" : "CLASS", - "lbl" : "process efficacy" + "lbl" : "curved lateral" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015005", + "id" : "http://purl.obolibrary.org/obo/PATO_0001646", "meta" : { "definition" : { - "val" : "Slender and spirally coiled.", - "xrefs" : [ "https://en.wiktionary.org/wiki/tendril" ] + "val" : "A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary and outwards in relation to the physical space occupied by another entity.", + "xrefs" : [ "PATOC:nc" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "tendril-like", + "pred" : "hasExactSynonym", + "val" : "extruding from", "xrefs" : [ ] }, { "pred" : "hasRelatedSynonym", - "val" : "tendril-shaped", + "val" : "exits through", "xrefs" : [ ] }, { - "pred" : "hasBroadSynonym", - "val" : "tendrilled", + "pred" : "hasRelatedSynonym", + "val" : "exposed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -10438,519 +10902,533 @@ } ] }, "type" : "CLASS", - "lbl" : "tendrilous" + "lbl" : "protruding out of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015006", + "id" : "http://purl.obolibrary.org/obo/PATO_0000318", "meta" : { "definition" : { - "val" : "A quality inhering in a structure by virtue of it consisting of many of repeated, similar or identical subunits, arranged in some orderly array.", - "xrefs" : [ "GOC:DOS", "https://github.com/pato-ontology/pato/issues/78" ] + "val" : "A color hue with low wavelength of that portion of the visible spectrum lying between green and indigo, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 490 nanometers.", + "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "A complete coverage of this domain would subclasses homopolymeric, copolymeric, crystalline." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "polymeric" + "lbl" : "blue" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015003", + "id" : "http://purl.obolibrary.org/obo/PATO_0001647", "meta" : { - "definition" : { - "val" : "A decrease in the ability of a process to produce its output.", - "xrefs" : [ "PATOC:PortlandMeetingFeb2015" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015004" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000052" } ] }, - "type" : "CLASS", - "lbl" : "decreased efficacy" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015004", + "id" : "http://purl.obolibrary.org/obo/PATO_0000317", "meta" : { "definition" : { - "val" : "A increase in the ability of a process to produce its output.", - "xrefs" : [ "PATOC:PortlandMeetingFeb2015" ] + "val" : "A color that lacks any hues as parts.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "black" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001640", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015003" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001511" } ] }, - "type" : "CLASS", - "lbl" : "increased efficacy" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002164", + "id" : "http://purl.obolibrary.org/obo/PATO_0001641", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the middle.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-12-02T10:06:21Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001624" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "curved medial" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002165", + "id" : "http://purl.obolibrary.org/obo/PATO_0000310", "meta" : { - "definition" : { - "val" : "To bent or hang downwards.", - "xrefs" : [ "thefreedictionary.:thefreedictionary." ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "sagging", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-12-02T03:32:55Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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Such a term requires editor note(s) to identify the outstanding issues.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Alan Ruttenberg" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "group:OBI" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-11-26T02:34:06Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "requires discussion" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_32525", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "Theria", + "xrefs" : [ ] } ] }, "type" : "CLASS", - 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"subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-11-26T04:50:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "herniated into" + "lbl" : "patchy" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002168", + "id" : "http://purl.obolibrary.org/obo/PATO_0001609", "meta" : { "definition" : { - "val" : "An angular placement quality inhering in a bearer by virtue of the bearer being changed in position in relation to another entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being scattered; spread irregularly, and at a distance from each other.", + "xrefs" : [ "biology.lsu:biology.lsu" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "mislocalised to", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-01-14T04:45:18Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "displaced to" + "lbl" : "sparse" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002169", + "id" : "http://purl.obolibrary.org/obo/PATO_0001606", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being split along the median axis.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A coating which is oily and slippery.", + "xrefs" : [ ".answers.com:.answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-03T04:37:15Z" } ] }, "type" : "CLASS", - "lbl" : "split medially" + "lbl" : "greasy" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002166", + "id" : "http://purl.obolibrary.org/obo/PATO_0001607", "meta" : { "definition" : { - "val" : "A duration quality of a process inhering in a bearer by virtue of the bearer's premature completion of the closure of the opening of an anatomical entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A tangled quality inhering in a bearer by virtue of the bearer's being not possible to unravel.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-12-02T04:10:10Z" } ] }, "type" : "CLASS", - "lbl" : "premature closure" + "lbl" : "matted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002167", + "id" : "http://purl.obolibrary.org/obo/PATO_0001600", "meta" : { "definition" : { - "val" : "A protruding quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded out of the surface or boundary of another entity.", + "val" : "A rotation quality inhering in a bearer by virtue of being rotated towards the rear of organism.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-12-02T05:19:32Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "herniated out of" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", - "type" : "PROPERTY", - "lbl" : "has_obo_format_version" + "lbl" : "posteriorly rotated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015009", + "id" : "http://purl.obolibrary.org/obo/PATO_0001601", "meta" : { "definition" : { - "val" : "A quality inhering in air by virtue of the partial pressure exerted by the bearer's water vapour content.", - "xrefs" : [ "https://github.com/pato-ontology/pato/issues/90" ] + "val" : "A rotation quality inhering in a bearer by virtue of being rotated towards the front of an organism.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "humidity" + "lbl" : "anteriorly rotated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015007", + "id" : "http://purl.obolibrary.org/obo/PATO_0001604", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the degree to which the bearers stands out or projects beyond a surface or line.", - "xrefs" : [ "GOC:CJM" ] + "val" : "A life span which is relatively low.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low life span", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001603" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0002157" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "distended" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002161", + "id" : "http://purl.obolibrary.org/obo/PATO_0001603", "meta" : { "definition" : { - "val" : "Having two horns or horn-shaped branches.", - "xrefs" : [ "mondofacto:mondofacto" ] + "val" : "A life span which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high life span", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - 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"type" : "PROPERTY", - "lbl" : "causally upstream of or within, positive effect" + "type" : "CLASS", + "lbl" : "regulation of receptor binding" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004046", + "id" : "http://purl.obolibrary.org/obo/GO_1900122", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002418" + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor.", + "xrefs" : [ "GOC:TermGenie", "GOC:signaling" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "upregulation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-03-13T23:55:05Z" + "pred" : "hasExactSynonym", + "val" : "up regulation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "val" : "bf" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-02-22T11:41:00Z" } ] }, + "type" : "CLASS", + "lbl" : "positive regulation of receptor binding" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", "type" : "PROPERTY", - "lbl" : "causally upstream of or within, negative effect" + "lbl" : "has_related_synonym" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0043086", + "id" : "http://purl.obolibrary.org/obo/GO_0048018", "meta" : { "definition" : { - "val" : "Any process that stops or reduces the activity of an enzyme.", - "xrefs" : [ "GOC:ebc", "GOC:jl", "GOC:tb", "GOC:vw" ] + "val" : "The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands).", + "xrefs" : [ "GOC:kv", "GOC:molecular_function_refactoring", "GOC:pdt" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "down-regulation of enzyme activity", - "xrefs" : [ ] + "pred" : "hasBroadSynonym", + "val" : "receptor agonist activity", + "xrefs" : [ "GOC:molecular_function_refactoring" ] }, { "pred" : "hasExactSynonym", - "val" : "negative regulation of enzyme activity", - "xrefs" : [ "GOC:tb" ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "downregulation of metalloenzyme activity", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "negative regulation of metalloenzyme activity", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "inhibition of enzyme activity", + "val" : "signaling molecule", "xrefs" : [ ] }, { "pred" : "hasNarrowSynonym", - "val" : "inhibition of metalloenzyme activity", + "val" : "vitamin D receptor activator activity", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "down-regulation of metalloenzyme activity", + "val" : "signaling receptor ligand activity", "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-13T04:51:59Z" }, { - "pred" : "hasNarrowSynonym", - "val" : "down regulation of metalloenzyme activity", - "xrefs" : [ ] + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Definition discussed in https://github.com/geneontology/go-ontology/issues/14220" }, { - "pred" : "hasExactSynonym", - "val" : "downregulation of enzyme activity", - "xrefs" : [ ] + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "midori" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0071884" + } ] + }, + "type" : "CLASS", + "lbl" : "receptor ligand activity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002065", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being arranged like rays or radii; radiating from a common center.", + "xrefs" : [ "PATOC:me" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "down regulation of enzyme activity", + "val" : "stellate", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0048553" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-07-01T01:48:19Z" } ] }, "type" : "CLASS", - "lbl" : "negative regulation of catalytic activity" + "lbl" : "star shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002175", + "id" : "http://purl.obolibrary.org/obo/PATO_0002066", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's changed direction of position towards another entity.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A solid configuration inhering in a material entity by virtue of its constituent atoms, molecules, or ions being arranged in an orderly repeating pattern extending in all three spatial dimensions.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Crystal" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-07-01T01:50:40Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-25T09:14:42Z" } ] }, "type" : "CLASS", - "lbl" : "deviation" + "lbl" : "crystal configuration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002176", + "id" : "http://purl.obolibrary.org/obo/PATO_0002063", "meta" : { "definition" : { - "val" : "A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the side.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape inhering in a bearer by virtue of the bearer's being elongated and cylindrical.", + "xrefs" : [ "PATOC:me" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -10959,22 +11437,22 @@ "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-25T09:16:04Z" + "val" : "2009-07-01T01:44:06Z" } ] }, "type" : "CLASS", - "lbl" : "deviation towards the lateral side" + "lbl" : "columnar" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002173", + "id" : "http://purl.obolibrary.org/obo/PATO_0002064", "meta" : { "definition" : { - "val" : "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning towards an additional entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A structure quality inhering in a bearer by virtue of the bearer's delimited by a surface with holes.", + "xrefs" : [ "PATOC:me" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-22T03:18:17Z" + "val" : "2009-07-01T01:46:53Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -10984,976 +11462,1205 @@ } ] }, "type" : "CLASS", - "lbl" : "misaligned towards" + "lbl" : "fenestrated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002174", + "id" : "http://purl.obolibrary.org/obo/PATO_0002069", "meta" : { "definition" : { - "val" : "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning away from an additional entity.", + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002068" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-22T03:18:48Z" + "val" : "2009-07-01T02:33:41Z" } ] }, "type" : "CLASS", - "lbl" : "misaligned away from" + "lbl" : "unstratified" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002179", + "id" : "http://purl.obolibrary.org/obo/PATO_0002067", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards to point of attachment or origin.", + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's layered configuration.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-25T12:34:48Z" + "val" : "2009-07-01T02:30:45Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "mislocalised proximally" + "lbl" : "stratification" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002177", + "id" : "http://purl.obolibrary.org/obo/PATO_0002068", "meta" : { "definition" : { - "val" : "A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the middle.", + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-25T09:16:56Z" + "val" : "2009-07-01T02:31:53Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002069" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "deviation towards the medial side" + "lbl" : "stratified" }, { - 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"definition" : { - "val" : "A compositional quality inhering in an bearer by virtue of the bearer's infiltration by leukocytes, local edema and accumulation of plasma proteins.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "Pongidae", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T01:37:35Z" + "pred" : "hasExactSynonym", + "val" : "great apes", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Hominidae" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_9605", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "humans", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Homo" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_9606", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "man", + "xrefs" : [ ] }, { - 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"subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T03:04:52Z" + "val" : "2009-09-21T10:18:11Z" } ] }, "type" : "CLASS", - "lbl" : "papillary" + "lbl" : "broken into two pieces" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002109", + "id" : "http://purl.obolibrary.org/obo/PATO_0002083", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's resembling cheese.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "Having extra or fewer parts.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "cheese-like", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T03:09:27Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "2009-09-21T10:41:58Z" } ] }, "type" : "CLASS", - "lbl" : "caseous" + "lbl" : "altered number of" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004033", + "id" : "http://purl.obolibrary.org/obo/PATO_0002084", "meta" : { + "definition" : { + "val" : "The period after death of the organism.", + "xrefs" : [ "thefreedictionary:thefreedictionary" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - 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"id" : "http://purl.obolibrary.org/obo/PATO_0001251", + "id" : "http://purl.obolibrary.org/obo/PATO_0002081", "meta" : { "definition" : { - "val" : "A color consisting of grey color and low brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A broken quality inhering in a bearer by virtue of the bearer's being broken into multiple contiguous wholes.", + "xrefs" : [ "PATOC:GJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-09-21T10:18:51Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "dark grey" + "lbl" : "shattered" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001252", + "id" : "http://purl.obolibrary.org/obo/PATO_0002082", "meta" : { "definition" : { - "val" : "A color consisting of grey color and high brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A broken quality inhering in a bearer by virtue of the bearer's being still one contiguous whole but structurally damaged such that in danger of become two or more.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-09-21T10:20:06Z" } ] }, "type" : "CLASS", - "lbl" : "light grey" + "lbl" : "partially broken" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001250", + "id" : "http://purl.obolibrary.org/obo/PATO_0002098", "meta" : { "definition" : { - "val" : "A color consisting of green hue and high brightness.", + "val" : "A disposition inhering in a tumour by virtue of the bearer's disposition to spread and invade distant tissues.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-05T12:54:48Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "light green" + "lbl" : "neoplastic, metastatic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002102", + "id" : "http://purl.obolibrary.org/obo/PATO_0002099", "meta" : { "definition" : { - "val" : "A cellular quality inhering in a cell that arises by virtue of whether the bearer exhibits the ability to grow and proliferate in number through cell division.", + "val" : "A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-05T12:58:54Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T01:16:31Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002100" } ] }, "type" : "CLASS", - "lbl" : "proliferative" + "lbl" : "differentiated" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016301", + "id" : "http://purl.obolibrary.org/obo/PATO_0002096", "meta" : { "definition" : { - "val" : "Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.", - "xrefs" : [ "ISBN:0198506732" ] + "val" : "A disposition inhering in a tumour by virtue of the bearer's disposition not to progress, invade surrounding tissues or metastasize.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_plant" ], - "xrefs" : [ { - "val" : "Reactome:R-HSA-6788855" - }, { - "val" : "Reactome:R-HSA-6788867" - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "phosphokinase activity", + "pred" : "hasRelatedSynonym", + "val" : "benign", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term." + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-05T12:47:14Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "molecular_function" - } ] - }, - "type" : "CLASS", - "lbl" : "kinase activity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001255", - "meta" : { - "definition" : { - "val" : "A color consisting of orange hue and high brightness.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "light orange" + "lbl" : "neoplastic, non-malignant" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001256", + "id" : "http://purl.obolibrary.org/obo/PATO_0002097", "meta" : { "definition" : { - "val" : "A color consisting of orange color and low brightness.", + "val" : "A disposition inhering in a tumour by virtue of the bearer's disposition to progress, invade surrounding tissues or metastasize.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-05T12:50:22Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "dark orange" + "lbl" : "neoplastic, malignant" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002103", + "id" : "http://purl.obolibrary.org/obo/GO_0035556", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's penetrating or permeating another substance or area.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.", + "xrefs" : [ "GOC:bf", "GOC:jl", "GOC:signaling", "ISBN:3527303782" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "infiltrating", + "pred" : "hasNarrowSynonym", + "val" : "signal transmission via intracellular cascade", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "intracellular signaling pathway", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "intracellular signaling cascade", + "xrefs" : [ "GOC:signaling" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "signal transduction via intracellular signaling cascade", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "intracellular signal transduction pathway", "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "intracellular protein kinase cascade", + "xrefs" : [ "GOC:signaling" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "protein kinase cascade", + "xrefs" : [ "GOC:signaling" ] + }, { + "pred" : "hasExactSynonym", + "val" : "intracellular signaling chain", + "xrefs" : [ "ISBN:3527303782" ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0007242" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0007243" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - 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"pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002099" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T12:59:21Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-05T11:25:52Z" } ] }, "type" : "CLASS", - "lbl" : "undifferentiated" + "lbl" : "adenomatous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001253", + "id" : "http://purl.obolibrary.org/obo/PATO_0002091", "meta" : { "definition" : { - "val" : "A color consisting of magenta color and high brightness.", + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's having an onset and time course between acute and chronic.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-05T11:31:35Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "light magenta" + "lbl" : "subacute" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002101", + "id" : "http://purl.obolibrary.org/obo/PATO_0002094", "meta" : { "definition" : { - "val" : "A cellular quality inhering in a bearer by virtue of having changed from one fully differentiated state into another.", + "val" : "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for basic dyes under specific ph conditions.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "trans-differentiated", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-05T12:05:23Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T01:09:09Z" } ] }, "type" : "CLASS", - "lbl" : "metaplastic" + "lbl" : "basophilic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001254", + "id" : "http://purl.obolibrary.org/obo/PATO_0002095", "meta" : { "definition" : { - "val" : "A color consisting of magenta with low brightness.", + "val" : "A disposition inhering in a tumour to progress or fail to progress during it's life time.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-05T12:15:02Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "dark magenta" + "lbl" : "obsolete neoplasm disposition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002117", + "id" : "http://purl.obolibrary.org/obo/PATO_0002092", "meta" : { "definition" : { - "val" : "A morphology quality inhering in a bearer by virtue of the bearer's exhbiting the morphological characteristics of a gland.", + "val" : "A morphology quality inhering in a neoplastic cell by virtue of the bearer's exhibiting breakdown of cell-cell interaction maintaining tissue architecture, proliferative dysregulation and bizarre modification to nucleus size and shape.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T04:11:30Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "2009-10-05T11:45:53Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "glandular" + "lbl" : "anaplastic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002118", + "id" : "http://purl.obolibrary.org/obo/PATO_0002093", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being present in more than two copies.", + "val" : "A volume quality inhering in a degenerating cell by virtue of the bearer's exhibiting an increase in volume associated with cytoplasmic abnormalities.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T03:28:38Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-05T12:01:13Z" } ] }, "type" : "CLASS", - "lbl" : "multiple" + "lbl" : "ballooning" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001268", + "id" : "http://purl.obolibrary.org/obo/PO_0000003", "meta" : { "definition" : { - "val" : "A color consisting of brown hue and low saturation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A plant structure (PO:0005679) which is a whole organism.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "prothalli (narrow)", + "xrefs" : [ ] + }, { "pred" : "hasExactSynonym", - "val" : "pale brown", + "val" : "植物体全体 (Japanese, exact)", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "desaturated brown" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002115", - "meta" : { - "definition" : { - "val" : "A composition quality inhering in a bearer by virtue of the bearer's containing fibrin.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "hasNarrowSynonym", + "val" : "shrub (narrow)", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T04:01:01Z" + "pred" : "hasExactSynonym", + "val" : "planta entera (Spanish, exact)", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "gametophyte (narrow)", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "suffrutex (narrow)", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "herb (narrow)", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "suffrutices (narrow)", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "clonal colony (related)", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "colony (related)", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "frutices (narrow)", + "xrefs" : [ ] + }, { + "pred" : "hasBroadSynonym", + "val" : "ramet (broad)", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "prothallium (narrow)", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "woody clump (narrow)", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "vine (narrow)", + "xrefs" : [ ] + }, { + "pred" : "hasBroadSynonym", + "val" : "genet (broad)", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "prothallus (narrow)", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "tree (narrow)", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "sporophyte (narrow)", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "bush (narrow)", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "seedling (narrow)", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "liana (narrow)", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "frutex (narrow)", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "fibrinoid" + "lbl" : "whole plant" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001269", + "id" : "http://purl.obolibrary.org/obo/PATO_0002029", "meta" : { "definition" : { - "val" : "A color consisting of cyan colour and high saturation.", + "val" : "An osmolality which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "bright cyan", + "pred" : "hasExactSynonym", + "val" : "high osmolality", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-01-27T10:56:19Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002028" } ] }, "type" : "CLASS", - "lbl" : "saturated cyan" + "lbl" : "increased osmolality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002116", + "id" : "http://purl.obolibrary.org/obo/PATO_0002027", "meta" : { "definition" : { - "val" : "A composition quality inhering in exudate by virtue of the bearer's containing fibrin.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per kilogram of solvent.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Osmolarity" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T04:03:03Z" + "val" : "2009-01-27T10:53:11Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "fibrinopurulent" + "lbl" : "osmolality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002119", + "id" : "http://purl.obolibrary.org/obo/PATO_0002028", "meta" : { "definition" : { - "val" : "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of intracellular fluid.", + "val" : "An osmolality which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low osmolality", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002029" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T03:45:58Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "2009-01-27T10:55:33Z" } ] }, "type" : "CLASS", - "lbl" : "hydropic" + "lbl" : "decreased osmolality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001262", + "id" : "http://purl.obolibrary.org/obo/PATO_0002021", "meta" : { "definition" : { - "val" : "A color consisting of red hue and high brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a cone (a 3-D shape with a round cross section that tapers).", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Cone_(geometry)" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "xrefs" : [ { + "val" : "Image:http://upload.wikimedia.org/wikipedia/commons/d/d2/Cone_3d.png" + } ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "cone-shaped", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "light red" + "lbl" : "conical" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002110", + "id" : "http://purl.obolibrary.org/obo/PATO_0002022", "meta" : { "definition" : { - "val" : "A cellular quality inhering in a bearer by virtue of its having most of the cellular characteristics of the tissue of origin.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a minute projection (villus).", + "xrefs" : [ "PATOC:PEM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T03:26:29Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "well differentiated" + "lbl" : "villiform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001263", + "id" : "http://purl.obolibrary.org/obo/PATO_0002020", "meta" : { "definition" : { - "val" : "A color consisting of yellow hue and low brightness.", + "val" : "Pink color having high brightness and low saturation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dark yellow" + "lbl" : "pale pink" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001260", + "id" : "http://purl.obolibrary.org/obo/PATO_0002025", "meta" : { "definition" : { - "val" : "A color consisting of purple color and high brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A convex angle that is formed by one side of a polygon and a line extended from an adjacent side.", + "xrefs" : [ "http://en.wikipedia.org/wiki/Internal_angle" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "light purple" + "lbl" : "external angle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001261", + "id" : "http://purl.obolibrary.org/obo/PATO_0002026", "meta" : { "definition" : { - "val" : "A color consisting of red hue and low brightness.", + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2008-12-18T12:49:19Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001818" } ] }, "type" : "CLASS", - "lbl" : "dark red" + "lbl" : "non-progressive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002113", + "id" : "http://purl.obolibrary.org/obo/PATO_0002023", "meta" : { "definition" : { - "val" : "Perforated like a sieve.", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an apical-basal axis.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T03:38:22Z" } ] }, "type" : "CLASS", - "lbl" : "cribriform" + "lbl" : "apical-basal polarity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001266", + "id" : "http://purl.obolibrary.org/obo/PATO_0002024", "meta" : { "definition" : { - "val" : "A color consisting of blue hue and low saturation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the anterior-posterior axis.", + "xrefs" : [ "PATOC:MAH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "pale blue", + "val" : "rostral-caudal polarity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "superior-caudal polarity (human torso)", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -11962,240 +12669,193 @@ } ] }, "type" : "CLASS", - "lbl" : "desaturated blue" + "lbl" : "anterior-posterior polarity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002114", + "id" : "http://purl.obolibrary.org/obo/PATO_0002038", "meta" : { "definition" : { - "val" : "A composition quality inhering in a bearer by virtue of the bearer's containing excess lipid.", + "val" : "A structural quality inhering in a bearer whose structure which does not deteriorate.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "not degenerate", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-02-03T11:14:54Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T03:47:15Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000639" } ] }, "type" : "CLASS", - "lbl" : "fatty" + "lbl" : "non-degenerate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001267", + "id" : "http://purl.obolibrary.org/obo/PATO_0002039", "meta" : { "definition" : { - "val" : "A color consisting of brown hue and high saturation.", + "val" : "A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "bright brown", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002040" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "saturated brown" + "lbl" : "biconcave" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001264", + "id" : "http://purl.obolibrary.org/obo/PATO_0002032", "meta" : { "definition" : { - "val" : "A color consisting of yellow hue and high brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A reflectivity quality inhering in light by virtue of the bearer's scattering occurring at small angle to the incident beam.", + "xrefs" : [ "PATOC:mc" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "blond", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-01-27T11:38:49Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "light yellow" + "lbl" : "forward scatter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002111", + "id" : "http://purl.obolibrary.org/obo/PATO_0002033", "meta" : { "definition" : { - "val" : "A cellular quality inhering in a bearer by virtue of its lacking few of the cellular characteristics which would allow it to be fully differentiated.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A reflective quality that is the light scattering occurring at wide angle (around 90 degrees) to the incident beam.", + "xrefs" : [ "PATOC:mc" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T03:29:42Z" + "val" : "2009-01-27T11:39:36Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "moderately well differentiated" + "lbl" : "side scatter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002112", + "id" : "http://purl.obolibrary.org/obo/PATO_0002030", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "A molecular quality that inheres in a molecular entity by virtue of whether the bearer exhibits the ability of a probe to react precisely with a specific target molecule.", + "xrefs" : [ "PATOC:mc" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "pierced", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "permeable", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T03:37:05Z" + "val" : "2009-01-27T11:13:52Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001821" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000649" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "perforate" + "lbl" : "specificity to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001265", + "id" : "http://purl.obolibrary.org/obo/PATO_0002031", "meta" : { "definition" : { - "val" : "A color consisting of blue hue and high saturation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved or tilted such that the tip points upwards.", + "xrefs" : [ "PATOC:cjm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "bright blue", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-01-27T11:23:45Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "saturated blue" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym", - "type" : "PROPERTY", - "lbl" : "has_broad_synonym" + "lbl" : "upturned" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016310", + "id" : "http://purl.obolibrary.org/obo/PATO_0002036", "meta" : { "definition" : { - "val" : "The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.", - "xrefs" : [ "ISBN:0198506732" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located towards the central axis of the organism or an extremity.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], - "xrefs" : [ { - "val" : "Wikipedia:Phosphorylation" - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" - } ] - }, - "type" : "CLASS", - "lbl" : "phosphorylation" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0005634", - "meta" : { - "definition" : { - "val" : "A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.", - "xrefs" : [ "GOC:go_curators" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], - "xrefs" : [ { - "val" : "MIPS_funcat:70.10" - }, { - "val" : "Wikipedia:Cell_nucleus" - }, { - "val" : "NIF_Subcellular:sao1702920020" - } ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "cell nucleus", - "xrefs" : [ ] + "val" : "quality" }, { - "pred" : "hasNarrowSynonym", - "val" : "horsetail nucleus", - "xrefs" : [ "GOC:al", "GOC:mah", "GOC:vw", "PMID:15030757" ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/go.owl" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-02-01T02:06:20Z" } ] }, "type" : "CLASS", - "lbl" : "nucleus" - }, { - "id" : "http://purl.obolibrary.org/obo/pato#realized_by", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "PROPERTY", - "lbl" : "realized_by" + "lbl" : "axial to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002128", + "id" : "http://purl.obolibrary.org/obo/PATO_0002037", "meta" : { "definition" : { - "val" : "A quality inhering a bearer by virtue of the bearer's containing or resembling serum.", + "val" : "A structural quality inhering in a bearer by virtue of the bearer exhibiting deterioration of its structure.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-02-03T11:13:19Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T04:51:16Z" } ] }, "type" : "CLASS", - "lbl" : "serous" + "lbl" : "degeneration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002129", + "id" : "http://purl.obolibrary.org/obo/PATO_0002034", "meta" : { "definition" : { - "val" : "A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues.", + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being unseparated into parts or divisions.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "unseparated", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -12204,955 +12864,792 @@ "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T05:02:45Z" + "val" : "2009-01-27T11:53:46Z" } ] }, "type" : "CLASS", - "lbl" : "neoplastic, invasive" + "lbl" : "undivided" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002126", + "id" : "http://purl.obolibrary.org/obo/PATO_0002035", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's containing bone.", + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being on the same side in relation to another structure.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "bony", + "val" : "ipsilateral", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-02-01T02:04:11Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T04:42:11Z" } ] }, "type" : "CLASS", - "lbl" : "osseous" + "lbl" : "ipsilateral to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001279", + "id" : "http://purl.obolibrary.org/obo/pato#is_unit_of", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001280" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "pato.ontology" } ] }, - "type" : "CLASS" + "type" : "PROPERTY", + "lbl" : "is_unit_of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002127", + "id" : "http://purl.obolibrary.org/obo/PATO_0002049", "meta" : { "definition" : { - "val" : "A hardness quality of being rigid and resistant to pressure and fibrous.", + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis and towards the side.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-03-13T12:36:14Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "George Gkoutos" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T04:49:30Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "scirrhous" + "lbl" : "lateral and rotional curvature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002120", + "id" : "http://purl.obolibrary.org/obo/PATO_0002043", "meta" : { "definition" : { - "val" : "A quality inhering a bearer by virtue of the bearer's ability to generate pus.", + "val" : "An anterior-posterior diameter quality which is relatively large.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "purulent", + "pred" : "hasExactSynonym", + "val" : "high anterior-posterior diameter", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T03:56:00Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002042" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "suppurative" + "lbl" : "increased anterior-posterior diameter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001273", + "id" : "http://purl.obolibrary.org/obo/PATO_0002044", "meta" : { "definition" : { - "val" : "A color consisting of grey color and high saturation.", + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being a quadrilateral with two parallel sides.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "trapezoidal", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete bright grey" + "lbl" : "trapezoid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001274", + "id" : "http://purl.obolibrary.org/obo/PATO_0002041", "meta" : { "definition" : { - "val" : "A color consisting of grey color and low saturation.", + "val" : "A diameter that is along the anterior-posterior axis.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete pale grey" + "lbl" : "anterior-posterior diameter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002121", + "id" : "http://purl.obolibrary.org/obo/PATO_0002042", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's structureresembling an irregular meshwork with cross-linking struts.", + "val" : "An anterior-posterior diameter quality which is relatively small.", "xrefs" : [ "PATOC:GVG" ] }, - 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"val" : "george" + "val" : "george gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "trabecular" + "lbl" : "adaxial to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001271", + "id" : "http://purl.obolibrary.org/obo/PATO_0002048", "meta" : { "definition" : { - "val" : "A color consisting of green hue and high saturation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An organismal quality inhering in a bearer by virtue of the bearer's having two or more cell populations that differ in genetic makeup. 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"id" : "http://purl.obolibrary.org/obo/pato#has_divisor_quality", + "id" : "http://purl.obolibrary.org/obo/PATO_0002054", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's being flattened along transverse axis.", + "xrefs" : [ "PATOC:msp" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "laterally flattened", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "transversely flattened", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-03-26T03:03:37Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, - "type" : "PROPERTY", - "lbl" : "has_divisor_quality" + "type" : "CLASS", + "lbl" : "laterally compressed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002125", + "id" : "http://purl.obolibrary.org/obo/PATO_0002055", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's consisting a knot-like mass.", + "val" : "A fragility which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002056" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T04:40:06Z" + "val" : "2009-03-26T04:01:37Z" } ] }, "type" : "CLASS", - "lbl" : "nodular" + "lbl" : "increased fragility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001278", + "id" : "http://purl.obolibrary.org/obo/PATO_0002052", "meta" : { "definition" : { - "val" : "A color consisting of orange hue and low saturation.", + "val" : "An occurrence which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "pale orange", + "val" : "decreased incidence", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-03-26T11:12:35Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002051" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"id" : "http://purl.obolibrary.org/obo/PATO_0002122", + "id" : "http://purl.obolibrary.org/obo/PATO_0002058", "meta" : { "definition" : { - "val" : "A composition quality inhering in a bearer by virtue of the bearer's being composed of more than one identifiable entities.", + "val" : "An area which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002057" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T04:29:17Z" + "val" : "2009-03-30T04:12:11Z" } ] }, "type" : "CLASS", - "lbl" : "mixed" + "lbl" : "decreased area" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002123", + "id" : "http://purl.obolibrary.org/obo/PATO_0002059", "meta" : { "definition" : { - "val" : "Being smallest in amount, extent or degree.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The specific wavelength of light emitted by a fluorescent molecule, such as a labelled probe, upon absorption of light at the (higher) excitation wavelength.", + "xrefs" : [ "web:http://www.expertglossary.com/" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T04:33:48Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-05-27T02:25:33Z" } ] }, "type" : "CLASS", - 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"val" : "pale cyan", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "desaturated cyan" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0023056", - "meta" : { - "definition" : { - "val" : "Any process that activates, maintains or increases the frequency, rate or extent of a signaling process.", - "xrefs" : [ "GOC:mtg_signal" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "positive regulation of signalling process", - "xrefs" : [ "GOC:mah" ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "positive regulation of signaling process", - "xrefs" : [ "GOC:bf" ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - 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"xrefs" : [ "wikipedia:wikipedia" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-13T06:41:39Z" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term is also used in reference to the operation of the muscle in anatomy or musculature." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "adduction" + "lbl" : "obsolete process value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002134", + "id" : "http://purl.obolibrary.org/obo/PATO_0000297", "meta" : { "definition" : { - "val" : "A composition quaity inhering in a bearer by virtue of the bearer's containing of or pertaining to fibrils, or nanoscale fibers.", - "xrefs" : [ "wikipedia:wikipedia" ] + "val" : "A quality of a process which ends earlier than the natural end time or reference process.", + "xrefs" : [ "PATOC:LC" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "fibrillate", + "val" : "abolished", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "incomplete", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-26T12:53:47Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: the definition is incorrect. See absent." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001508" } ] }, "type" : "CLASS", - "lbl" : "fibrillary" + "lbl" : "arrested" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001287", + "id" : "http://purl.obolibrary.org/obo/PATO_0000296", "meta" : { - "definition" : { - "val" : "A color consisting of red and brown hue.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "red brown" + "lbl" : "obsolete speed value" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016772", + "id" : "http://purl.obolibrary.org/obo/PATO_0000299", "meta" : { "definition" : { - "val" : "Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).", - "xrefs" : [ "GOC:jl", "ISBN:0198506732" ] + "val" : "A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl" ], - "xrefs" : [ { - "val" : "EC:2.7" - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides." + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000300" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "molecular_function" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "transferase activity, transferring phosphorus-containing groups" + "lbl" : "mobile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001280", + "id" : "http://purl.obolibrary.org/obo/PATO_0000298", "meta" : { - "definition" : { - "val" : "Pink color having medium brightness and low saturation.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "bright pink", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001279" } ] }, "type" : "CLASS", - "lbl" : "dark pale pink" + "lbl" : "obsolete not arrested value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001281", + "id" : "http://purl.obolibrary.org/obo/PATO_0000291", "meta" : { - "definition" : { - "val" : "A color consisting of purple color and high saturation.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "bright purple", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "saturated purple" + "lbl" : "obsolete relative respiratory rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001215", + "id" : "http://purl.obolibrary.org/obo/PATO_0000290", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -13163,633 +13660,798 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete time_unit" + "lbl" : "obsolete absolute respiratory rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001699", + "id" : "http://purl.obolibrary.org/obo/PATO_0002007", "meta" : { "definition" : { - "val" : "A sleep pattern which has regular start and/or end times.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "xrefs" : [ { + "val" : "Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png" + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001700" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Use this term or an is_a child of this term when the entire shape of the object is known." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002008" } ] }, "type" : "CLASS", - "lbl" : "regular sleep pattern" + "lbl" : "convex 3-D shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000367", + "id" : "http://purl.obolibrary.org/obo/PATO_0002008", "meta" : { "definition" : { - "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces west.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "xrefs" : [ { + "val" : "Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png" + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002007" } ] }, "type" : "CLASS", - "lbl" : "right" + "lbl" : "concave 3-D shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000366", + "id" : "http://purl.obolibrary.org/obo/PATO_0002005", "meta" : { "definition" : { - "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces east.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Surface shape that refers to the inward or outward curvature of the surface.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "left" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001216", - "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete volume_unit" + "lbl" : "concavity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001697", + "id" : "http://purl.obolibrary.org/obo/PATO_0002006", "meta" : { "definition" : { - "val" : "A photosensitivity which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low photosensitivity", + "pred" : "hasRelatedSynonym", + "val" : "2-D projection", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "cross-sectional", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001698" } ] }, "type" : "CLASS", - "lbl" : "decreased photosensitivity" + "lbl" : "2-D shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000369", + "id" : "http://purl.obolibrary.org/obo/PATO_0002009", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity.", + "xrefs" : [ "PATOC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete unidirectional" + "lbl" : "branchiness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001213", + "id" : "http://purl.obolibrary.org/obo/PATO_0002000", "meta" : { + "definition" : { + "val" : "A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity.", + "xrefs" : [ "PATOC:CJM" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "xrefs" : [ { + "val" : "OBO_REL:lacks_part" + } ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "lacks all physical parts of type", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Example: [E=organism Q=lacks_all_parts_of_type E2=Wing] - applies to an organism. A relational quality in which the bearer entity has no parts of the specified type. The bearer of this quality has_part = 0 of the indicated entity type, where a comparable organism usually has at least 1 part of the same type. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e lacks all parts of type X at time t, then there exists no instances x of X at t such that x part_of e that has no wings, where wings are normally present in that organism type. In OWL this is equivalent to a restriction on the OBO_REL:has_part relation with cardinality=0, i.e has_part 0 E2." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001557" } ] }, "type" : "CLASS", - "lbl" : "obsolete mass_unit" + "lbl" : "lacks all parts of type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001698", + "id" : "http://purl.obolibrary.org/obo/PATO_0002003", "meta" : { "definition" : { - "val" : "A photosensitivity which is relatively high.", + "val" : "A quality that inheres in an entire population or part of a population.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high photosensitivity", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001697" } ] }, "type" : "CLASS", - "lbl" : "increased photosensitivity" + "lbl" : "population quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001214", + "id" : "http://purl.obolibrary.org/obo/PATO_0002004", "meta" : { + "definition" : { + "val" : "A shape that inheres in a part of a surface. An object can have different surface shapes on different parts of its surface.", + "xrefs" : [ "PATOC:CJM" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Consider PATO:0001925" } ] }, "type" : "CLASS", - "lbl" : "obsolete temparature_unit" + "lbl" : "obsolete surface shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000368", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_1338369", + "type" : "CLASS", + "lbl" : "Dipnotetrapodomorpha" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002001", "meta" : { + "definition" : { + "val" : "The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly.", + "xrefs" : [ "PATOC:CJM" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "has fewer physical parts of type", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "decreased number of", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "has decreased number of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002002" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001569" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete towards1" + "lbl" : "has fewer parts of type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001219", + "id" : "http://purl.obolibrary.org/obo/PATO_0002002", "meta" : { + "definition" : { + "val" : "The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part.", + "xrefs" : [ "PATOC:CJM" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "increased number of", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "having extra physical parts", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "having supernumerary physical parts", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "has increased number of", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "has extra parts of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002001" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001560" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "In polydactyly, the bearer of the quality is the hand, and the entity type being counted is 'finger'. In EQ syntax, E=hand, Q= E2=finger." } ] }, "type" : "CLASS", - "lbl" : "obsolete area_unit" + "lbl" : "has extra parts of type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001217", + "id" : "http://purl.obolibrary.org/obo/go#goslim_pir", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "PIR GO slim" } ] }, - "type" : "CLASS", - "lbl" : "obsolete energy_unit" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001218", + "id" : "http://purl.obolibrary.org/obo/PATO_0002018", "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low magnitude", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002017" } ] }, "type" : "CLASS", - "lbl" : "obsolete substance_unit" + "lbl" : "decreased magnitude" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001691", + "id" : "http://purl.obolibrary.org/obo/PATO_0002019", "meta" : { "definition" : { - "val" : "A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A growth quality of occurrent in which the growth of an organism, structure or group of organisms does not occur.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "agenesis", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This refers to the disposition of the bearer." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - 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"lbl" : "obsolete bi-directional" + "lbl" : "offset" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001694", + "id" : "http://purl.obolibrary.org/obo/PATO_0002437", "meta" : { "definition" : { - "val" : "A viscosity which relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being locked together or interconnected to another entity.", + "xrefs" : [ "merriam-webster:merriam-webster" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low viscosity", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001693" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:37:13Z" } ] }, "type" : "CLASS", - "lbl" : "decreased viscosity" + "lbl" : "interlocked with" }, { - "id" : "http://purl.obolibrary.org/obo/pato#correlates_with", + "id" : "http://purl.obolibrary.org/obo/PATO_0001106", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "correlates_with" + "type" : "CLASS", + "lbl" : "obsolete relative strain value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000378", + "id" : "http://purl.obolibrary.org/obo/PATO_0001103", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute frequency value" + "lbl" : "obsolete relative stiffness value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001226", + "id" : "http://purl.obolibrary.org/obo/PATO_0002434", "meta" : { + "definition" : { + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity.", + "xrefs" : [ "PATOC:WC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000070" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:29:55Z" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "perpendicular to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001227", + "id" : "http://purl.obolibrary.org/obo/PATO_0002435", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change.", - "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer touching another entity along a border or with a projecting part.", + "xrefs" : [ "merriam-webster:merriam-webster" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "variable", + "val" : "abut", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000438" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:31:12Z" } ] }, "type" : "CLASS", - "lbl" : "variant" + "lbl" : "abutting" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000377", + "id" : "http://purl.obolibrary.org/obo/PATO_0001104", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete frequency value" + "lbl" : "obsolete strain value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001224", + "id" : "http://purl.obolibrary.org/obo/PATO_0001109", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -13800,22 +14462,35 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete real number" + "lbl" : "obsolete absolute amplitude value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000379", + "id" : "http://purl.obolibrary.org/obo/PATO_0002438", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being located or placed beneath the skin.", + "xrefs" : [ "thefreedictionary:thefreedictionary" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "subcutaneous", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:41:50Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative frequency value" + "lbl" : "subdermal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001225", + "id" : "http://purl.obolibrary.org/obo/PATO_0001107", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -13826,9 +14501,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relational number" + "lbl" : "obsolete density value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001228", + "id" : "http://purl.obolibrary.org/obo/PATO_0001108", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -13839,171 +14514,227 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete dull" + "lbl" : "obsolete relative amplitude value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001229", + "id" : "http://purl.obolibrary.org/obo/PATO_0002439", "meta" : { "definition" : { - "val" : "A color saturation which is of high purity.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "An angular shape quality inhering in a bearer by virtue of the bearer's having two angles in its length giving the bearer the form of the letter W.", + "xrefs" : [ "PATOC:WC" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "vivid", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "bright", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000328" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:45:54Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "high saturation" + "lbl" : "w-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000370", + "id" : "http://purl.obolibrary.org/obo/PATO_0001101", "meta" : { - "definition" : { - "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000365" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "up" + "lbl" : "obsolete stiffness value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000372", + "id" : "http://purl.obolibrary.org/obo/PATO_0002432", "meta" : { + "definition" : { + "val" : "A shape that is in the form of a spade.", + "xrefs" : [ "PATOC:WC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:26:49Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute distance value" + "lbl" : "spade-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000371", + "id" : "http://purl.obolibrary.org/obo/PATO_0002433", "meta" : { + "definition" : { + "val" : "A surface feature shape marked by large amounts of relief, often with multiple ridges and grooves in close association. Topographically complex.", + "xrefs" : [ "PATOC:AD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:27:55Z" + } ] + }, + "type" : "CLASS", + "lbl" : "sculpted surface" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001102", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete distance value" + "lbl" : "obsolete absolute stiffness value" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0043227", + "id" : "http://purl.obolibrary.org/obo/PATO_0002430", "meta" : { "definition" : { - "val" : "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.", - "xrefs" : [ "GOC:go_curators" ] + "val" : "A shape quality in which the bearer is shaped like a narrow band; ligulate.", + "xrefs" : [ "thefreedictionary:thefreedictionary" ] }, - "xrefs" : [ { - "val" : "NIF_Subcellular:sao414196390" - } ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "membrane-enclosed organelle", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:21:17Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "membrane-bounded organelle" + "lbl" : "strap-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000374", + "id" : "http://purl.obolibrary.org/obo/PATO_0002431", "meta" : { "definition" : { - "val" : "A distance which is greater relative to the normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality in which the bearer possesses a gradual, yet distinct, thinning from a wide starting point.", + "xrefs" : [ "PATOC:WC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "long distance", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000375" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:24:46Z" } ] }, "type" : "CLASS", - "lbl" : "increased distance" + "lbl" : "waisted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001222", + "id" : "http://purl.obolibrary.org/obo/PATO_0001100", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete solid_angle_unit" + "lbl" : "obsolete position value" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0043226", + "id" : "http://purl.obolibrary.org/obo/GO_0031324", "meta" : { "definition" : { - "val" : "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane.", - "xrefs" : [ "GOC:go_curators" ] + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.", + "xrefs" : [ "GOC:mah" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], - "xrefs" : [ { - "val" : "Wikipedia:Organelle" + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "downregulation of cellular metabolic process", + "xrefs" : [ ] }, { - "val" : "NIF_Subcellular:sao1539965131" + "pred" : "hasExactSynonym", + "val" : "negative regulation of cellular metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of cellular metabolic process", + "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "organelle" + "lbl" : "negative regulation of cellular metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000373", + "id" : "http://purl.obolibrary.org/obo/GO_0031325", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.", + "xrefs" : [ "GOC:mah" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "up regulation of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of cellular metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "positive regulation of cellular metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of cellular metabolic process", + "xrefs" : [ ] }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of cellular metabolic process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative distance value" + "lbl" : "positive regulation of cellular metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001223", + "id" : "http://purl.obolibrary.org/obo/PATO_0001116", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -14014,37 +14745,51 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete quantitative value" + "lbl" : "obsolete relative impulse value" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0043229", + "id" : "http://purl.obolibrary.org/obo/PATO_0002447", "meta" : { "definition" : { - "val" : "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.", - "xrefs" : [ "GOC:go_curators" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer being divided into four parts.", + "xrefs" : [ "PATOC:WC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T11:08:28Z" } ] }, "type" : "CLASS", - "lbl" : "intracellular organelle" + "lbl" : "quadripartite" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000376", + "id" : "http://purl.obolibrary.org/obo/PATO_0002448", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's being aligned or positioned towards another entity.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-02-16T02:57:06Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete flavor value" + "lbl" : "oriented towards" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001220", + "id" : "http://purl.obolibrary.org/obo/PATO_0001117", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -14055,106 +14800,118 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete angle_unit" + "lbl" : "obsolete absolute impulse value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001221", + "id" : "http://purl.obolibrary.org/obo/PATO_0002445", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being twisted or turned.", + "xrefs" : [ "freedictionary:freedictionary" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "twisted", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "The word \"torsion\" has multiple different meanings in different context (e.g. the act of twisting or the morphology of the digestive tract in gastropods). This term refers purely to the resulting shape and is not to be used in the engineering and mechanics sense of torsion. \nNote: kinked PATO:0001798(synonym twisted) is similar to 'torsioned', but it is different in that something that is kinked has sharp twists or turns." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T11:05:26Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete plane_angle_unit" + "lbl" : "torsioned" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000375", + "id" : "http://purl.obolibrary.org/obo/PATO_0001114", "meta" : { - "definition" : { - "val" : "A distance which is lesser relative to the normal or average.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "short distance", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000374" } ] }, "type" : "CLASS", - "lbl" : "decreased distance" + "lbl" : "obsolete relative energy value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000389", + "id" : "http://purl.obolibrary.org/obo/PATO_0002446", "meta" : { "definition" : { - "val" : "A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course.", - "xrefs" : [ "dictionary:reference" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an anchor.", + "xrefs" : [ "PATOC:WC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001863" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T11:07:17Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "acute" + "lbl" : "anchor-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001237", + "id" : "http://purl.obolibrary.org/obo/PATO_0001115", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001241" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete impulse value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000388", + "id" : "http://purl.obolibrary.org/obo/PATO_0002449", "meta" : { + "definition" : { + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and mid-line surface of an organism relative to another entity.", + "xrefs" : [ "PATOC:WC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-02-16T03:00:46Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete intensity value" + "lbl" : "posteromedial to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001238", + "id" : "http://purl.obolibrary.org/obo/PATO_0001118", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001241" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete momentum value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001235", + "id" : "http://purl.obolibrary.org/obo/PATO_0001119", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -14165,168 +14922,144 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete strength value" + "lbl" : "obsolete absolute momentum value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001236", + "id" : "http://purl.obolibrary.org/obo/PATO_0002440", "meta" : { "definition" : { - "val" : "A quality which inheres in an process.", + "val" : "A surface feature shape quality inhering in a bearer by virtue of the degree of the bearer's highly topographical with ridges, pits, rugosity or other surface structures.", "xrefs" : [ "PATOC:GVG" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "relational quality of occurrent", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "quality of process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "quality of occurrent", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "quality of a process", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "See comments of relational quality of a physical entity." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001239" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001240" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T10:57:42Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "process quality" + "lbl" : "ornamentation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001239", + "id" : "http://purl.obolibrary.org/obo/PATO_0002443", "meta" : { + "definition" : { + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being located at the same level as another entity.", + "xrefs" : [ "PATOC:NI" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001236" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T11:01:46Z" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "level with" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0043231", + "id" : "http://purl.obolibrary.org/obo/PATO_0001112", "meta" : { - "definition" : { - "val" : "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. 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"val" : "infrequent", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "low frequency", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000380" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "decreased frequency" + "lbl" : "obsolete absolute energy value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000380", + "id" : "http://purl.obolibrary.org/obo/PATO_0002444", "meta" : { "definition" : { - "val" : "A frequency which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A composition quality inhering in a bearer by virtue of the bearer's being composed of or possessing inorganic material.", + "xrefs" : [ "PATOC:WC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high frequency", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "frequent", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000381" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T11:03:49Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "increased frequency" + "lbl" : "mineralized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001230", + "id" : "http://purl.obolibrary.org/obo/PATO_0002441", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's power or force.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures.", + "xrefs" : [ "PATOC:AD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002442" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T10:59:42Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "strength" + "lbl" : "ornamented" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000383", + "id" : "http://purl.obolibrary.org/obo/PATO_0001110", "meta" : { - "definition" : { - "val" : "A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.", - "xrefs" : [ "MGED:MGED" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "female" + "lbl" : "obsolete absolute density value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000382", + "id" : "http://purl.obolibrary.org/obo/pato#disposition_slim", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Disposition slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001111", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -14337,153 +15070,153 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete gender value" + "lbl" : "obsolete relative density value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001233", + "id" : "http://purl.obolibrary.org/obo/PATO_0002442", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the back or upper surface of an organism relative to another entity.", - "xrefs" : [ "PATOC:nw" ] + "val" : "A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures.", + "xrefs" : [ "PATOC:AD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "superior_to (human head)", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "dorsal", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "posterior_to (human torso)", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T11:00:20Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001234" + "val" : "http://purl.obolibrary.org/obo/PATO_0002441" } ] }, "type" : "CLASS", - "lbl" : "dorsal to" + "lbl" : "unornamented" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000385", + "id" : "http://purl.obolibrary.org/obo/GO_0031323", "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.", + "xrefs" : [ "GOC:mah" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of cellular metabolism", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "obsolete hardness value" + "lbl" : "regulation of cellular metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000384", + "id" : "http://purl.obolibrary.org/obo/PATO_0002458", "meta" : { "definition" : { - "val" : "A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A quality inhering in a bearer by virtue of the bearer being thin and lacking outgrowths.", + "xrefs" : [ "PATOC:JL" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-04-09T06:03:56Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "male" + "lbl" : "pin-like" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001234", + "id" : "http://purl.obolibrary.org/obo/RO_0002022", "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity.", - "xrefs" : [ "PATOC:nw" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "distal", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001233" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:24Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly regulated by" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001127", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "distal to" + "lbl" : "obsolete work value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000387", + "id" : "http://purl.obolibrary.org/obo/PATO_0002459", "meta" : { "definition" : { - "val" : "A hardness quality of giving little resistance to pressure.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a sepal,", + "xrefs" : [ "PATOC:JL" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000386" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-04-09T06:04:36Z" } ] }, "type" : "CLASS", - "lbl" : "soft" + "lbl" : "sepal-like" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001231", + "id" : "http://purl.obolibrary.org/obo/RO_0002023", "meta" : { + "definition" : { + "val" : "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.", + "xrefs" : [ "GOC:dos" ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:38Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" } ] }, - "type" : "CLASS", - "lbl" : "obsolete cold insensitive" + "type" : "PROPERTY", + "lbl" : "directly negatively regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000386", + "id" : "http://purl.obolibrary.org/obo/PATO_0001128", "meta" : { - "definition" : { - "val" : "A hardness quality of being rigid and resistant to pressure.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "tough", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "impenetrable", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "firm", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000387" } ] }, "type" : "CLASS", - "lbl" : "hard" + "lbl" : "obsolete absolute work value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001232", + "id" : "http://purl.obolibrary.org/obo/PATO_0001125", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -14494,74 +15227,101 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete heat insentive" + "lbl" : "obsolete absolute pressure value" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000412", + "id" : "http://purl.obolibrary.org/obo/RO_0002024", "meta" : { + "definition" : { + "val" : "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.", + "xrefs" : [ "GOC:dos" ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" } ] }, "type" : "PROPERTY", - "lbl" : "imported from" + "lbl" : "directly positively regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/pato#relational_slim", + "id" : "http://purl.obolibrary.org/obo/PATO_0002456", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of an inflorescence.", + "xrefs" : [ "PATOC:JL" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Relational slim: types of quality that require an additional entity in order to exist" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-04-09T06:02:05Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, - "type" : "PROPERTY" + "type" : "CLASS", + "lbl" : "inflorescence-like" }, { - "id" : "http://purl.obolibrary.org/obo/pato#has_dividend_quality", + "id" : "http://purl.obolibrary.org/obo/PATO_0002457", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a leaf.", + "xrefs" : [ "PATOC:JL" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-04-09T06:02:58Z" } ] }, - "type" : "PROPERTY", - "lbl" : "has_dividend_quality" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0100001", - "type" : "PROPERTY", - "lbl" : "term replaced by" + "type" : "CLASS", + "lbl" : "leaf-like" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002385", + "id" : "http://purl.obolibrary.org/obo/RO_0002025", "meta" : { "definition" : { - "val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y", - "xrefs" : [ ] + "val" : "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.", + "xrefs" : [ "GOC:dos" ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-22T14:14:36Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations." } ] }, "type" : "PROPERTY", - "lbl" : "has potential to developmentally contribute to" + "lbl" : "has effector activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001248", + "id" : "http://purl.obolibrary.org/obo/PATO_0001126", "meta" : { - "definition" : { - "val" : "A color consisting of cyan hue and low brightness.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dark cyan" + "lbl" : "obsolete relative pressure value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000399", + "id" : "http://purl.obolibrary.org/obo/PATO_0001129", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -14572,105 +15332,135 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete life span value" + "lbl" : "obsolete relative work value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001249", + "id" : "http://purl.obolibrary.org/obo/PATO_0002450", "meta" : { "definition" : { - "val" : "A color consisting of green hue and low brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A hardness quality of giving significant resistance to pressure.", + "xrefs" : [ "PATOC:CM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-02-26T02:02:38Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dark green" + "lbl" : "firm" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002387", + "id" : "http://purl.obolibrary.org/obo/RO_0002019", "meta" : { "definition" : { - "val" : "x has the potential to develop into y iff x develops into y or if x is capable of developing into y", - "xrefs" : [ ] + "val" : "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.", + "xrefs" : [ "GOC:dos" ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-07-19T17:30:36Z" } ] }, "type" : "PROPERTY", - "lbl" : "has potential to develop into" + "lbl" : "has ligand" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001246", + "id" : "http://purl.obolibrary.org/obo/PATO_0002451", "meta" : { "definition" : { - "val" : "A color consisting of brown hue and high brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's exhibiting a phenotypic difference between males and females of the same species.", + "xrefs" : [ "PATOC:WC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-03-11T09:22:04Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "light brown" + "lbl" : "sexually dimorphic" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002388", + "id" : "http://purl.obolibrary.org/obo/PATO_0001120", "meta" : { - "definition" : { - "val" : "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "has potential to directly develop into" + "type" : "CLASS", + "lbl" : "obsolete relative momentum value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001247", + "id" : "http://purl.obolibrary.org/obo/PATO_0002454", "meta" : { "definition" : { - "val" : "A color consisting of cyan hue and high brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a carpel.", + "xrefs" : [ "PATO:JL" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-04-09T06:00:28Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "light cyan" + "lbl" : "carpel-like" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002384", + "id" : "http://purl.obolibrary.org/obo/PATO_0001123", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative power value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002015", "meta" : { "definition" : { - "val" : "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).", + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:17Z" } ] }, "type" : "PROPERTY", - "lbl" : "has developmental potential involving" + "lbl" : "has positive regulatory component activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000392", + "id" : "http://purl.obolibrary.org/obo/PATO_0001124", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -14681,111 +15471,104 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete limited" + "lbl" : "obsolete pressure value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001240", + "id" : "http://purl.obolibrary.org/obo/PATO_0002455", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's architecture bearing resemblence to a corymb type of inflorescence.", + "xrefs" : [ "PATOC:JL" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001236" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-04-09T06:01:02Z" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "corymb-like" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000391", + "id" : "http://purl.obolibrary.org/obo/PATO_0001121", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete intense" + "lbl" : "obsolete power value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001241", + "id" : "http://purl.obolibrary.org/obo/RO_0002017", "meta" : { - "definition" : { - "val" : "A quality which inheres in a continuant.", - "xrefs" : [ "PATOC:GVG" ] - }, - "xrefs" : [ { - "val" : "snap:Quality" - } ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "quality of an object", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "quality of continuant", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "quality of a single physical entity", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "quality of a continuant", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "monadic quality of an object", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "monadic quality of continuant", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "monadic quality of a continuant", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "multiply inhering quality of a physical entity", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001237" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001238" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:44:33Z" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles." + "val" : "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B." + } ] + }, + "type" : "PROPERTY", + "lbl" : "has component activity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002452", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed.", + "xrefs" : [ "PATOC:JL" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-04-08T08:43:31Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001485" } ] }, "type" : "CLASS", - "lbl" : "physical object quality" + "lbl" : "decondensed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000394", + "id" : "http://purl.obolibrary.org/obo/PATO_0002453", "meta" : { "definition" : { - "val" : "An intensity which is less than moderate in type or degree or effect or force.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer bring gradually worn away.", + "xrefs" : [ "PATOC:JL" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-04-08T08:45:08Z" } ] }, "type" : "CLASS", - "lbl" : "mild intensity" + "lbl" : "eroding" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000393", + "id" : "http://purl.obolibrary.org/obo/PATO_0001122", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -14796,140 +15579,159 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete maximal" + "lbl" : "obsolete absolute power value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001244", + "id" : "http://purl.obolibrary.org/obo/RO_0002018", "meta" : { "definition" : { - "val" : "A color consisting of blue hue and low brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:49:21Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" } ] }, - "type" : "CLASS", - "lbl" : "dark blue" + "type" : "PROPERTY", + "lbl" : "has component process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000396", + "id" : "http://purl.obolibrary.org/obo/PATO_0000686", "meta" : { - "definition" : { - "val" : "An intensity which is extremely bad or unpleasant in type or degree or effect or force.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "severe intensity" + "lbl" : "obsolete absolute rate value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000395", + "id" : "http://purl.obolibrary.org/obo/PATO_0000685", "meta" : { - "definition" : { - "val" : "An intensity which is less than extreme in type or degree or effect or force.", - "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "moderate intensity" + "lbl" : "obsolete relative incidence value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001245", + "id" : "http://purl.obolibrary.org/obo/PATO_0000688", "meta" : { "definition" : { - "val" : "A color consisting of brown hue and low brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000695" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dark brown" + "lbl" : "asynchronous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000398", + "id" : "http://purl.obolibrary.org/obo/RO_0002013", "meta" : { + "definition" : { + "val" : "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:30:46Z" } ] }, - "type" : "CLASS", - "lbl" : "obsolete vigorous" + "type" : "PROPERTY", + "lbl" : "has regulatory component activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001242", + "id" : "http://purl.obolibrary.org/obo/RO_0002014", "meta" : { "definition" : { - "val" : "A physical quality which is equal to the distance between repeating units of a wave pattern.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:01Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" } ] }, - "type" : "CLASS", - "lbl" : "wavelength" + "type" : "PROPERTY", + "lbl" : "has negative regulatory component activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000397", + "id" : "http://purl.obolibrary.org/obo/PATO_0000687", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete slight" + "lbl" : "obsolete relative rate value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001243", + "id" : "http://purl.obolibrary.org/obo/PATO_0000689", "meta" : { "definition" : { - "val" : "A color consisting of blue hue and high brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "uninterrupted", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000690" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000429" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "light blue" + "lbl" : "continuous" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0000000", + "id" : "http://purl.obolibrary.org/obo/PATO_0000680", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/caro.owl" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "anatomical entity" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "type" : "PROPERTY", - "lbl" : "has_alternative_id" + "lbl" : "obsolete absolute temporal value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000390", + "id" : "http://purl.obolibrary.org/obo/PATO_0000682", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -14940,458 +15742,446 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete extreme" + "lbl" : "obsolete rate value" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0000003", + "id" : "http://purl.obolibrary.org/obo/PATO_0000681", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/caro.owl" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "connected anatomical structure" + "lbl" : "obsolete incidence value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002508", + "id" : "http://purl.obolibrary.org/obo/PATO_0000684", "meta" : { - "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer being hidden from view.", - "xrefs" : [ "PATOC:EJS" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - 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"definition" : { - "val" : "An achromatic color of maximum brightness; the color of objects that reflect nearly all light of all visible wavelengths.", - "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "whitish", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "white" + "lbl" : "obsolete relative texture value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001655", + "id" : "http://purl.obolibrary.org/obo/PATO_0000696", "meta" : { - "definition" : { - "val" : "A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per liter of solution.", - 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"xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low osmolarity", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001657" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "decreased osmolarity" + "lbl" : "obsolete glutinous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000322", + "id" : "http://purl.obolibrary.org/obo/PATO_0000698", "meta" : { - "definition" : { - "val" : "A color hue with high wavelength of the long-wave end of the visible spectrum, evoked in the human observer by radiant energy with wavelengths of approximately 630 to 750 nanometers.", - 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"pred" : "hasExactSynonym", - "val" : "posterolaterally directed", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "kchris" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "cellular_component" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:19:28Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "2017-03-21T17:26:07Z" } ] }, "type" : "CLASS", - "lbl" : "posterolateral orientation" + "lbl" : "plasma membrane bounded cell projection" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001653", + "id" : "http://purl.obolibrary.org/obo/PATO_0000691", "meta" : { - "definition" : { - "val" : "An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity.", - "xrefs" : [ "PATO:GVG" ] + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000694" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000690", + "meta" : { + "definition" : { + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - 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"id" : "http://purl.obolibrary.org/obo/PATO_0000325", + "id" : "http://purl.obolibrary.org/obo/PATO_0000693", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete bright" + "lbl" : "obsolete late" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000324", + "id" : "http://purl.obolibrary.org/obo/PATO_0010004", "meta" : { "definition" : { - "val" : "A color hue with medium wavelength of that portion of the visible spectrum lying between orange and green, evoked in the human observer by radiant energy with wavelengths of approximately 570 to 590 nanometers.", - "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] + "val" : "A propagation velocity that is lower than normal.", + "xrefs" : [ "orcid:0000-0002-7073-9172" ] }, - 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"synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "dark", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000665" + "val" : "http://purl.obolibrary.org/obo/PATO_0000688" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "low brightness" + "lbl" : "synchronous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002506", + "id" : "http://purl.obolibrary.org/obo/PATO_0010002", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's not having undulating edges forming lobes.", - "xrefs" : [ "PATOC:DOS" ] + "val" : "The velocity of spatial propagation of a process. Examples include the velocity of propagation of an action potential along an axon.", + "xrefs" : [ "orcid:0000-0002-7073-9172" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-25T04:42:40Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2019-07-18T18:24:15Z" } ] }, "type" : "CLASS", - "lbl" : "alobate" + "lbl" : "propagation velocity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001659", + "id" : "http://purl.obolibrary.org/obo/PATO_0000694", "meta" : { "definition" : { - "val" : "A rotation quality inhering in a bearer by virtue of being rotated towards the abdomen of an organism.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality of a process which starts earlier than the natural start time or the reference process.", + "xrefs" : [ "PATO:LC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "advanced", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "early", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "precocious", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0002086" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000691" } ] }, "type" : "CLASS", - "lbl" : "ventrally rotated" + "lbl" : "premature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002507", + "id" : "http://purl.obolibrary.org/obo/pato#attribute_slim", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Attribute slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002409", "meta" : { "definition" : { - "val" : "A composition quality inhering in a bearer by virtue of the bearer's consisting of keratin.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "Bounded structure filled with fluid.", + "xrefs" : [ "PATOC:MPATH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:53:18Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-02-04T12:38:14Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "keratinous" + "lbl" : "fluid-filled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000326", + "id" : "http://purl.obolibrary.org/obo/GO_0043393", "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of protein binding.", + "xrefs" : [ "GOC:go_curators" ] + }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "obsolete dim" + "lbl" : "regulation of protein binding" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000329", + "id" : "http://purl.obolibrary.org/obo/PATO_0002403", "meta" : { "definition" : { - "val" : "A color pattern inhering in a bearer by virtue of bearer's being marked with irregularly shaped spots or blots of a different hue or degree of saturation.", - "xrefs" : [ "Dictionary.com:Dictionary.com" ] + "val" : "Affecting all regions without specificity of distribution.", + "xrefs" : [ "PATOC:MPTH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "blotched", + "val" : "generalised", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:41:37Z" } ] }, "type" : "CLASS", - "lbl" : "blotchy" + "lbl" : "generalized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002504", + "id" : "http://purl.obolibrary.org/obo/PATO_0002404", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally.", - "xrefs" : [ "PATOC:WD" ] + "val" : "Affecting a segment or segments.", + "xrefs" : [ "PATOC:MPATH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "posterodorsally directed", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002527" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -15399,397 +16189,427 @@ "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:19:36Z" + "val" : "2012-12-17T10:43:13Z" } ] }, "type" : "CLASS", - "lbl" : "posterodorsal orientation" + "lbl" : "segmental" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001657", + "id" : "http://purl.obolibrary.org/obo/PATO_0002401", "meta" : { "definition" : { - "val" : "A osmolarity which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "characterised by an unidentifiable pattern.", + "xrefs" : [ "PATOC:MPATH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high osmolarity", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001656" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:37:55Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased osmolarity" + "lbl" : "random pattern" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000328", + "id" : "http://purl.obolibrary.org/obo/PATO_0002402", "meta" : { "definition" : { - "val" : "A color saturation which is of low purity.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "Multiple lesions some interconnecting with each other.", + "xrefs" : [ "PATOC:MPATH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "dull", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "pale", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001229" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:40:18Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "low saturation" + "lbl" : "multifocal to coalescing" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002505", + "id" : "http://purl.obolibrary.org/obo/PATO_0002407", "meta" : { "definition" : { - "val" : "A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Having become firm or hard especially by increase of fibrous elements.", + "xrefs" : [ "mw:http://www.merriam-webster.com/dictionary/indurated" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:49:11Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-21T05:44:34Z" } ] }, "type" : "CLASS", - "lbl" : "nucleated" + "lbl" : "indurated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001658", + "id" : "http://purl.obolibrary.org/obo/PATO_0002408", "meta" : { "definition" : { - "val" : "A rotatiotion quality inhering in a bearer by virtue of being rotated towards the back or upper surface of an organism.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Having the consistency of water.", + "xrefs" : [ "PATOC:MPATH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:51:32Z" } ] }, "type" : "CLASS", - "lbl" : "dorsally rotated" + "lbl" : "watery" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001651", + "id" : "http://purl.obolibrary.org/obo/PATO_0002405", "meta" : { "definition" : { - "val" : "A resistance to a stimulus which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's disposition to be reduced to smaller pieces with little effort.", + "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Friability" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "decreased resistance", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "low resistance to", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001650" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:47:16Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "decreased resistance to" + "lbl" : "friability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001652", + "id" : "http://purl.obolibrary.org/obo/PATO_0002406", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's spatial positioning with respect to an additional entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Easily reduced to powder or easily fragmentable or crumbly.", + "xrefs" : [ "PATOC:MPATH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:48:30Z" } ] }, "type" : "CLASS", - "lbl" : "alignment" + "lbl" : "friable" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000321", + "id" : "http://purl.obolibrary.org/obo/PATO_0002400", "meta" : { "definition" : { - "val" : "A color consisting of red and blue hues.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Magenta" ] + "val" : "Having a spindle-like shape that is wide in the middle and tapers at both ends.", + "xrefs" : [ "wikipedia:wikipedia" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-07T05:43:25Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "magenta" + "lbl" : "fusiform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000320", + "id" : "http://purl.obolibrary.org/obo/PATO_0002414", "meta" : { "definition" : { - "val" : "A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers.", - "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] + "val" : "A quality of duration having progressive course of indefinite duration with active, acute-like elements.", + "xrefs" : [ "PATOC:MPATH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:59:58Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "green" + "lbl" : "chronic-active" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001650", + "id" : "http://purl.obolibrary.org/obo/PATO_0002415", "meta" : { "definition" : { - "val" : "A resistance to a stimulus which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Single lesion with expansion into surrounding tissue.", + "xrefs" : [ "PATOC:MPATH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "increased resistance", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "high resistance to", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001651" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T11:01:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased resistance to" + "lbl" : "focally extensive" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0032991", + "id" : "http://purl.obolibrary.org/obo/PATO_0002412", "meta" : { "definition" : { - "val" : "A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.", - "xrefs" : [ "GOC:dos", "GOC:mah" ] + "val" : "A color consisting of yellow and brown hue and low brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "protein complex", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "protein containing complex", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "protein-protein complex", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "macromolecule complex", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "macromolecular complex", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0043234" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:56:22Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole." + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "protein-containing complex" + "lbl" : "dark yellow brown" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016020", + "id" : "http://purl.obolibrary.org/obo/PATO_0002413", "meta" : { "definition" : { - "val" : "A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.", - "xrefs" : [ "GOC:dos", "GOC:mah", "ISBN:0815316194" ] + "val" : "A color consisting of yellow and brown hue and high brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], - "xrefs" : [ { - "val" : "Wikipedia:Biological_membrane" - } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:57:27Z" } ] }, "type" : "CLASS", - "lbl" : "membrane" + "lbl" : "light yellow brown" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0000014", + "id" : "http://purl.obolibrary.org/obo/PATO_0002418", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/caro.owl" + "definition" : { + "val" : "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for acidic dyes under specific ph conditions.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "cell part (CARO)" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T03:01:19Z" } ] }, "type" : "CLASS", - "lbl" : "cell part" + "lbl" : "acidophilic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002519", + "id" : "http://purl.obolibrary.org/obo/PATO_0002419", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's having an open, latticed, or porous structure; used especially of bone.", - "xrefs" : [ "TheFreeDictionary:cancellous" ] + "val" : "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for eosin dye.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-02-10T01:33:14Z" + "val" : "2012-12-17T03:02:09Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "cancellous" + "lbl" : "eosinophilic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001666", + "id" : "http://purl.obolibrary.org/obo/PATO_0002416", "meta" : { + "definition" : { + "val" : "Flattened from above downward; below the normal level or the level of the surrounding parts.", + "xrefs" : [ "PATOC:MPATH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001596" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T12:06:55Z" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "sunken" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000334", + "id" : "http://purl.obolibrary.org/obo/PATO_0002417", "meta" : { + "definition" : { + "val" : "Extending through or affecting the entire thickness of the wall of an organ or cavity or boundary.", + "xrefs" : [ "PATOC:MPATH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T02:16:18Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000337" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "transmural" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002513", + "id" : "http://purl.obolibrary.org/obo/PATO_0002410", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's having a slanting direction (neither perpendicular nor parallel) relative to another entity.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "A colour that is very pale yellowish brown.", + "xrefs" : [ "PATOC:MPATH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:54:55Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-02-06T02:54:16Z" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "oblique to" + "lbl" : "beige" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002514", + "id" : "http://purl.obolibrary.org/obo/PATO_0002411", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteromedially.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "A color consisting of yellow and brown hue.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "medioanterior orientation", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-02-07T12:59:10Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:55:51Z" } ] }, "type" : "CLASS", - "lbl" : "anteromedial orientation" + "lbl" : "yellow brown" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001667", + "id" : "http://purl.obolibrary.org/obo/PATO_0000649", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0002112" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000642", "meta" : { "definition" : { - "val" : "An attachment quality inhering in a bearer by virtue of the bearer's connection or association with another entity.", + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "fused", + "xrefs" : [ ] + }, { "pred" : "hasRelatedSynonym", - "val" : "affixed to", + "val" : "merged with", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "attached", + "val" : "fused to", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "joined with", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "coalesced", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000651" } ] }, "type" : "CLASS", - 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"subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low solubility", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001663" + "val" : "http://purl.obolibrary.org/obo/PATO_0001206" + } ] + }, + "type" : "CLASS", + "lbl" : "unserrated" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000641", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased solubility" + "lbl" : "obsolete deposition defective" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002511", + "id" : "http://purl.obolibrary.org/obo/PATO_0001972", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a cane.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches branching into a reticulum toward the margin.", + "xrefs" : [ "Hickey:1988" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "cane-shaped", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-02-06T02:04:35Z" } ] }, "type" : "CLASS", - "lbl" : "cane-like" + "lbl" : "reticulodromous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000336", + "id" : "http://purl.obolibrary.org/obo/PATO_0000644", "meta" : { "definition" : { - "val" : "A color quality inhering in a bearer by virtue of the bearer's having color.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Hyperplastic" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hyperplasia", + "xrefs" : [ ] + }, { "pred" : "hasRelatedSynonym", - "val" : "pigmented", + "val" : "overdeveloped", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000943" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000331" + "val" : "http://purl.obolibrary.org/obo/PATO_0000645" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000332" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "colored" + "lbl" : "hyperplastic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001665", + "id" : "http://purl.obolibrary.org/obo/PATO_0000643", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being located near a surface.", - "xrefs" : [ "Dictionary.com:Dictionary.com" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it.", + "xrefs" : [ "spinalstenosis:spinalstenosis" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "superficial to", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001471" } ] }, "type" : "CLASS", - "lbl" : "superficial" + "lbl" : "herniated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002512", + "id" : "http://purl.obolibrary.org/obo/PATO_0001973", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer flowing or coming together with another entity.", - "xrefs" : [ "Merriam-Webster:confluent" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being tapering gradually into a rigid point.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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"val" : "A color quality inhering in a bearer by virtue of the bearer's lacking color.", + "val" : "A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hypoplasia", + "xrefs" : [ ] + }, { "pred" : "hasRelatedSynonym", - "val" : "unpigmented", + "val" : "underdeveloped", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000644" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000334" + "val" : "PATO:0000942" } ] }, "type" : "CLASS", - "lbl" : "colorless" + "lbl" : "hypoplastic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002518", + "id" : "http://purl.obolibrary.org/obo/PATO_0001976", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer being level or even with another surface.", - "xrefs" : [ "WordReference:flush" ] + "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having or lacking sharp straight-edged teeth pointing to the apex.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-02-10T01:26:50Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" } ] }, "type" : "CLASS", - "lbl" : "flush" + "lbl" : "serration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001668", + "id" : "http://purl.obolibrary.org/obo/PATO_0000648", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being in close proximity and physically interacting with another entity.", + "val" : "A morphological quality inhering in a bearer by virtue of the bearer's being blocked or filled with obstacles or an obstacle.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obstructed" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001977", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having at least one salient angle on the margin.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "associated", + "val" : "angulate", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -16033,737 +16859,559 @@ } ] }, "type" : "CLASS", - "lbl" : "associated with" + "lbl" : "angular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002515", + "id" : "http://purl.obolibrary.org/obo/PATO_0000647", "meta" : { "definition" : { - "val" : "An elevation quality inhering in a bearer by virtue the bearer's being in a high position relative to another entity.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's undergoing unprogrammed cell death.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Necrotic" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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"pred" : "hasNarrowSynonym", - "val" : "cysts", + "pred" : "hasExactSynonym", + "val" : "light", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Cystic is an abnormal condition." + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cystic" + "lbl" : "high brightness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002520", + "id" : "http://purl.obolibrary.org/obo/PATO_0001995", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer being shaped like a scute or an osteoderm.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "A quality that inheres in an entire organism or part of an organism.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - 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Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] + }, + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "regulation of receptor activity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "obsolete sporophytic compatability value" + "lbl" : "regulation of signaling receptor activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002521", + "id" : "http://purl.obolibrary.org/obo/PATO_0000668", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a funnel.", - "xrefs" : [ "PATOC:EJS" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-02-10T01:40:05Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "funnel-shaped" + "lbl" : "obsolete mass_quantity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000340", + "id" : "http://purl.obolibrary.org/obo/PATO_0000667", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -16774,167 +17422,257 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative compatability value" + "lbl" : "obsolete liquid substance value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001674", + "id" : "http://purl.obolibrary.org/obo/PATO_0001998", "meta" : { "definition" : { - "val" : "A concentration quality inhering in a bearer by virtue of the bearer's catalytic activity divided by the volume of the system.", - "xrefs" : [ "IUPAC:IUPAC" ] + "val" : "A quality inhering in a bearer by virtue of its visibility.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term was created as a grouping term for the 2 terms \"conspicuous\" and \"inconspicuous\". However, it is not clear if these terms should even remain in PATO." } ] }, "type" : "CLASS", - "lbl" : "catalytic (activity) concentration" + "lbl" : "conspicuousness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001671", + "id" : "http://purl.obolibrary.org/obo/PATO_0001999", "meta" : { "definition" : { - "val" : "A distribution which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high distribution", + "val" : "loss of", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001672" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased distribution" + "lbl" : "lacks parts or has fewer parts of type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000343", + "id" : "http://purl.obolibrary.org/obo/PATO_0000669", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete gametophyte incompatible value" + "lbl" : "obsolete concentration_unit" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000342", + "id" : "http://purl.obolibrary.org/obo/GO_0008152", "meta" : { + "definition" : { + "val" : "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.", + "xrefs" : [ "GOC:go_curators", "ISBN:0198547684" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "xrefs" : [ { + "val" : "MIPS_funcat:01" + }, { + "val" : "Wikipedia:Metabolism" + } ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "single-organism metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "multicellular organism metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "metabolism resulting in cell growth", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "metabolic process resulting in cell growth", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "metabolism", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions." }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044710" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "janelomax" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-10-17T15:46:40Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044236" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "obsolete gametophyte compatible value" + "lbl" : "metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001672", + "id" : "http://purl.obolibrary.org/obo/GO_0045936", "meta" : { "definition" : { - "val" : "A distribution which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates.", + "xrefs" : [ "GOC:go_curators" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low distribution", + "val" : "downregulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "negative regulation of phosphate metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of phosphate metabolic process", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001671" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "decreased distribution" - }, { - "id" : "http://purl.obolibrary.org/obo/pato#hpo_slim", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Human phenotype slim" - } ] - }, - "type" : "PROPERTY" + "lbl" : "negative regulation of phosphate metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002535", + "id" : "http://purl.obolibrary.org/obo/GO_0008150", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a short and stout cylindrical shape.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.", + "xrefs" : [ "GOC:pdt" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pombe", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "xrefs" : [ { + "val" : "Wikipedia:Biological_process" + } ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "single-organism process", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "single organism process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "physiological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "biological process", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code \"no data\" (ND), is used to indicate this." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" + "val" : "janelomax" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0007582" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0000004" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-08-12T11:30:08Z" - } ] - }, - "type" : "CLASS", - "lbl" : "peg-like" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001204", - "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "2012-09-19T15:05:24Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044699" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "obsolete not enlarged" + "lbl" : "biological_process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001688", + "id" : "http://purl.obolibrary.org/obo/GO_0045937", "meta" : { "definition" : { - "val" : "An elevation which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates.", + "xrefs" : [ "GOC:go_curators" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "elevated", + "pred" : "hasExactSynonym", + "val" : "upregulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of phosphate metabolic process", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "high elevation", + "val" : "up regulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "positive regulation of phosphate metabolism", "xrefs" : [ ] } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of phosphate metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001992", + "meta" : { + "definition" : { + "val" : "An organismal quality inhering in a bearer by virtue of the bearer's consisting cells.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001689" } ] }, "type" : "CLASS", - "lbl" : "increased elevation" + "lbl" : "cellularity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000356", + "id" : "http://purl.obolibrary.org/obo/PATO_0000660", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -16945,77 +17683,69 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete concentration value" + "lbl" : "obsolete angle_quantity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002536", + "id" : "http://purl.obolibrary.org/obo/PATO_0001993", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a boomerang, with two arms connected at an angle.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A cellularity quality inhering in a bearer by virtue of the bearer's consisting of more than one cell.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "multicellular" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000662", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-08-12T11:32:16Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "boomerang shaped" + "lbl" : "obsolete volume_quantity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001205", + "id" : "http://purl.obolibrary.org/obo/PATO_0001990", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having toothlike projections in the margin.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A duration quality of a process inhering in a disease by virtue of the bearer's duration of an impairment of health or of a condition of abnormal functioning.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "toothed", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "dentate", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "MAH: I think this term should be obsoleted. Is it used?" } ] }, "type" : "CLASS", - "lbl" : "dentated" + "lbl" : "duration of disease" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001689", + "id" : "http://purl.obolibrary.org/obo/PATO_0001991", "meta" : { "definition" : { - "val" : "An elevation which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to being capable of indefinite growth or division.", + "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low elevation", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001688" } ] }, "type" : "CLASS", - "lbl" : "decreased elevation" + "lbl" : "immortal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000355", + "id" : "http://purl.obolibrary.org/obo/PATO_0000661", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -17026,30 +17756,26 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete enzyme composition value" + "lbl" : "obsolete solid substance value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002533", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_376913", + "type" : "CLASS", + "lbl" : "Haplorrhini" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000675", "meta" : { - "definition" : { - "val" : "A multipartite quality inhering in a bearer by virtue of the bearer being divided into two parts.", - "xrefs" : [ "PATOC:WD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-08-12T11:12:13Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "bipartite" + "lbl" : "obsolete body temperature value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000358", + "id" : "http://purl.obolibrary.org/obo/PATO_0000674", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -17060,150 +17786,91 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete sugar concentration value" + "lbl" : "obsolete absolute temperature value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001202", + "id" : "http://purl.obolibrary.org/obo/PATO_0000677", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001306" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000586" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001686", + "id" : "http://purl.obolibrary.org/obo/PATO_0000676", "meta" : { - "definition" : { - "val" : "A magnetic quality inhering in a bearer by virtue of the bearer's inability to exert magnitism.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001685" - } ] - }, - "type" : "CLASS", - "lbl" : "non-magnetic" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001687", - "meta" : { - "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface.", - "xrefs" : [ "Trailillustrated:Trailillustrated" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "elevation" + "lbl" : "obsolete relative temperature value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002534", + "id" : "http://purl.obolibrary.org/obo/PATO_0000679", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a plowshare.", - "xrefs" : [ "PATOC:WD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "xrefs" : [ { - "val" : "Image:http://2.bp.blogspot.com/_TbkIC-eqFNM/S66IJ3omNWI/AAAAAAAAFSk/pzThLJPvYZw/s1600/ard-detail.gif" - } ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "plow-share shaped", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-08-12T11:23:12Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "plowshare shaped" + "lbl" : "obsolete temporal value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001203", + "id" : "http://purl.obolibrary.org/obo/PATO_0000678", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001873" + "val" : "http://purl.obolibrary.org/obo/PATO_0001305" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000357", + "id" : "http://purl.obolibrary.org/obo/PATO_0000671", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete protein concentration value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001208", - "meta" : { - "definition" : { - "val" : "An odor quality inhering in a bearer by virtue of the bearer's lacking odour.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "odorless" + "lbl" : "obsolete water value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002539", + "id" : "http://purl.obolibrary.org/obo/PATO_0000670", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a ring (a circular shape enclosing a space).", - "xrefs" : [ "PATOC:WD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-08-12T12:01:56Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "ring shaped" + "lbl" : "obsolete saccharin versus water value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000359", + "id" : "http://purl.obolibrary.org/obo/PATO_0000673", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -17214,9 +17881,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete water content value" + "lbl" : "obsolete temperature value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001209", + "id" : "http://purl.obolibrary.org/obo/PATO_0000672", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -17227,238 +17894,247 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute function" + "lbl" : "obsolete unit" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002537", + "id" : "http://purl.obolibrary.org/obo/PATO_0001938", "meta" : { "definition" : { - "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a shape not quite ovoid. approximately ovoid.", - "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/subovoid" ] + "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's being oval and a little angular in the middle.", + "xrefs" : [ "ISBN:0881923214" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-08-12T11:51:38Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" } ] }, "type" : "CLASS", - "lbl" : "subovoid" + "lbl" : "rhomboid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001206", + "id" : "http://purl.obolibrary.org/obo/PATO_0000606", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex.", - "xrefs" : [ "ISBN:0881923214" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "serrate", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001975" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "serrated" + "lbl" : "obsolete absolute angle value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002538", + "id" : "http://purl.obolibrary.org/obo/PATO_0000605", "meta" : { - "definition" : { - "val" : "A shape quality that obtains by virtue of the bearer being concave on one side and convex on the other.", - "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/concavo-convex" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "concavoconvex", + "pred" : "hasRelatedSynonym", + "val" : "position", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "location", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - 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"id" : "http://purl.obolibrary.org/obo/PATO_0001680", + "id" : "http://purl.obolibrary.org/obo/PATO_0001936", "meta" : { "definition" : { - "val" : "A volume quality inhering in a homogeneous substance containing 6.02 x 1023 atoms or molecules by virtue of the amount of 3-dimensional space it occupies.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Molar_volume" ] + "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's being egg-shaped and flat, with the narrow end attached to the base.", + "xrefs" : [ "wordreference:wordreference" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "obovoid", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"lbl" : "obsolete metabolite composition value" + "lbl" : "variant shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001684", + "id" : "http://purl.obolibrary.org/obo/PATO_0001931", "meta" : { "definition" : { - "val" : "A magnetism which is relatively low.", + "val" : "A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low magnetism", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001683" + "val" : "http://purl.obolibrary.org/obo/PATO_0001930" } ] }, "type" : "CLASS", - "lbl" : "decreased magnetism" + "lbl" : "invariant shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001200", + "id" : "http://purl.obolibrary.org/obo/PATO_0000600", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter T.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A width which is relatively large.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "broad", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "wide", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "wide/broad", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000599" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "T-shaped" + "lbl" : "increased width" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001201", + "id" : "http://purl.obolibrary.org/obo/PATO_0001934", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter Y.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being perfectly circular.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "Y-shaped" + "lbl" : "orbicular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000351", + "id" : "http://purl.obolibrary.org/obo/PATO_0000602", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -17469,195 +18145,188 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete macromolecular composition value" + "lbl" : "obsolete angle value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002532", + "id" : "http://purl.obolibrary.org/obo/PATO_0000601", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "PATO:0002632" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "obsoleted because the ID was accidentally reused" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete secondary" + "lbl" : "obsolete spatial value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001685", + "id" : "http://purl.obolibrary.org/obo/PATO_0001935", "meta" : { "definition" : { - "val" : "A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being roundish, a little inclining to be oblong.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "roundish", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001686" } ] }, "type" : "CLASS", - "lbl" : "magnetic" + "lbl" : "obtuse" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002335", + "id" : "http://purl.obolibrary.org/obo/PATO_0000604", "meta" : { - "definition" : { - "val" : "inverse of negatively regulates", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "PROPERTY", - "lbl" : "negatively regulated by" + "type" : "CLASS", + "lbl" : "obsolete orientation value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001682", + "id" : "http://purl.obolibrary.org/obo/PATO_0001932", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to exert an attractive or repulsive force on other entities.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Magnetism" ] + "val" : "A pattern quality inhering in a bearer by virtue of the bearer's being placed alternately one above the other.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "magnetism" + "lbl" : "alternate placement" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000354", + "id" : "http://purl.obolibrary.org/obo/PATO_0000603", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete protein composition value" + "lbl" : "obsolete closure value" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002336", + "id" : "http://purl.obolibrary.org/obo/PATO_0001933", "meta" : { "definition" : { - "val" : "inverse of positively regulates", - "xrefs" : [ ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned on opposite sides on the same plane.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "positively regulated by" + "type" : "CLASS", + "lbl" : "opposite" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000353", + "id" : "http://purl.obolibrary.org/obo/PATO_0000617", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length.", + "xrefs" : [ "PATOC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "angled", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete secondary product composition value" + "lbl" : "bent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002530", + "id" : "http://purl.obolibrary.org/obo/PATO_0001949", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly in a little point.", + "xrefs" : [ "ISBN:0881923214" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "PATO:0002630" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "obsoleted because the ID was accidentally reused" } ] }, "type" : "CLASS", - "lbl" : "obsolete episodic" + "lbl" : "pointleted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001683", + "id" : "http://purl.obolibrary.org/obo/PATO_0000616", "meta" : { "definition" : { - "val" : "A magnetism which is relatively high.", + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's lacking symmetry.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high magnetism", + "val" : "asymmetry", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "asymmetric", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001684" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased magnetism" + "lbl" : "asymmetrical" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001619", + "id" : "http://purl.obolibrary.org/obo/PATO_0000619", "meta" : { "definition" : { - "val" : "A tonicity which is relatively low.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being overfilled.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low tonicity", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001618" + "val" : "http://purl.obolibrary.org/obo/PATO_0000633" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased tonicity" + "lbl" : "crowded" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001617", + "id" : "http://purl.obolibrary.org/obo/PATO_0001947", "meta" : { "definition" : { - "val" : "A morphological quality inhering in a bearer by virtue of the bearer's being distorted in form.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A color pattern inhering in a bearer by virtue of bearer's being covered with reticulated lines of a different hue or degree of saturation.", + "xrefs" : [ "ISBN:0881923214" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "distorted", + "pred" : "hasExactSynonym", + "val" : "net-like", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "disfigured", + "pred" : "hasExactSynonym", + "val" : "reticulated", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -17666,228 +18335,184 @@ } ] }, "type" : "CLASS", - "lbl" : "deformed" + "lbl" : "netted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001618", + "id" : "http://purl.obolibrary.org/obo/PATO_0001948", "meta" : { "definition" : { - "val" : "A tonicity which is relatively high.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by two or more parallel channels.", + "xrefs" : [ "PATOC:JE" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high tonicity", + "pred" : "hasRelatedSynonym", + "val" : "fluted", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001619" } ] }, "type" : "CLASS", - "lbl" : "increased tonicity" + "lbl" : "furrowed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000763", + "id" : "http://purl.obolibrary.org/obo/PATO_0000618", "meta" : { "definition" : { - "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's being affected by loss of the ability to move a body part.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's having two sides; two-sided.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "palsy", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "paralysed" + "lbl" : "bilateral" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001611", + "id" : "http://purl.obolibrary.org/obo/PATO_0001941", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits color variation or change.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A color consisting of yellow and green hues.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "variability of color" + "lbl" : "yellow green" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000762", + "id" : "http://purl.obolibrary.org/obo/PATO_0001942", "meta" : { "definition" : { - "val" : "Diminished, damaged, or weakened.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "A color consisting of brown and green hues.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "olive green", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", - "val" : "PATO:0001624" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete impaired" + "lbl" : "brown green" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002331", + "id" : "http://purl.obolibrary.org/obo/PATO_0000611", "meta" : { - "definition" : { - "val" : "c involved_in p if and only if c enables some process p', and p' is part of p", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "enables part of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "actively involved in" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Involved_in" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "involved in" + "type" : "CLASS", + "lbl" : "obsolete absolute orientation value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001612", + "id" : "http://purl.obolibrary.org/obo/PATO_0001940", "meta" : { "definition" : { - "val" : "A variability of color which is relatively high.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A size quality inhering in a bearer by virtue of the bearer's being many folds greater relative to the normal average.", + "xrefs" : [ "PATOC:UMH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high variability of color", + "val" : "giant", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001613" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased variability of color" + "lbl" : "gigantic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000765", + "id" : "http://purl.obolibrary.org/obo/PATO_0000610", "meta" : { + "definition" : { + "val" : "A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view.", + "xrefs" : [ "answers.com:answers.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000608" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute consumption value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001610", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000967" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS" + "lbl" : "open" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000764", + "id" : "http://purl.obolibrary.org/obo/PATO_0000613", "meta" : { "definition" : { - "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's receiving or being subjected to an action without responding or initiating an action in return.", - "xrefs" : [ "www.answers.com:www.answers.com" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000614" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "passive" + "lbl" : "disoriented" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002333", + "id" : "http://purl.obolibrary.org/obo/PATO_0001945", "meta" : { "definition" : { - "val" : "inverse of enables", - "xrefs" : [ ] + "val" : "A moderate yellow-orange to orange color.", + "xrefs" : [ "wordreference:wordreference" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "enabled by" + "type" : "CLASS", + "lbl" : "ochre" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001615", + "id" : "http://purl.obolibrary.org/obo/PATO_0001946", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A color pattern inhering in a bearer by virtue of bearer's exhibiting transverse stripes of one hue or degree of saturation crossing another.", + "xrefs" : [ "ISBN:0881923214" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "striped", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001614" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "variant color" + "lbl" : "banded" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000767", + "id" : "http://purl.obolibrary.org/obo/PATO_0000612", "meta" : { - "definition" : { - "val" : "A consumption which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "increased propensity to consume", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "high consumption", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Use GO:0007631" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { @@ -17896,424 +18521,364 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete increased consumption" + "lbl" : "obsolete relative orientation value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0055001", + "id" : "http://purl.obolibrary.org/obo/PATO_0001943", "meta" : { "definition" : { - "val" : "A spatial distribution of a process in which the process occupies a smaller length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type.", - "xrefs" : [ "orcid:0000-0003-4148-4606" ] + "val" : "A purple color which has low saturation and low brightness.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "midori" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2019-07-29T14:22:24Z" } ] }, "type" : "CLASS", - "lbl" : "decreased spatial extent of a process" + "lbl" : "lilac" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001616", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000700" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0055002", + "id" : "http://purl.obolibrary.org/obo/PATO_0000615", "meta" : { "definition" : { - "val" : "A spatial distribution of a process in which the process occupies a greater length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type.", - "xrefs" : [ "https://orcid.org/0000-0003-4148-4606" ] + "val" : "An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally anterior structures.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "anterioralized", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2019-07-29T14:23:31Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "midori" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased spatial extent of a process" + "lbl" : "wholly anterioralized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000766", + "id" : "http://purl.obolibrary.org/obo/PATO_0001944", "meta" : { + "definition" : { + "val" : "A color consisting of yellow and orange hue.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative consumption value" + "lbl" : "yellow orange" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001613", + "id" : "http://purl.obolibrary.org/obo/PATO_0000614", "meta" : { "definition" : { - "val" : "A variability of color which is relatively low.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A pattern where all the repeated elements are oriented in the same direction.", + "xrefs" : [ "PATOC:MAH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low variability of color", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001612" + "val" : "http://purl.obolibrary.org/obo/PATO_0000613" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased variability of color" + "lbl" : "oriented" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000769", + "id" : "http://purl.obolibrary.org/obo/PATO_0000628", "meta" : { "definition" : { - "val" : "A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement.", + "val" : "A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000770" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "ectopic", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "mislocalized", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000621" } ] }, "type" : "CLASS", - "lbl" : "coordinated" + "lbl" : "mislocalised" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001614", + "id" : "http://purl.obolibrary.org/obo/PATO_0000627", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A spatial pattern quality inhering in a bearer by virtue of the bearer's being confined or restricted to a particular location.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001615" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "localised", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "focal", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "invariant color" + "lbl" : "localized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000768", + "id" : "http://purl.obolibrary.org/obo/PATO_0001958", "meta" : { "definition" : { - "val" : "A consumption which is relatively low.", + "val" : "A variability of size which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low consumption", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "decreased propensity to consume", + "val" : "high variability of size", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Use GO:0007631" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001957" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "mereotopologically related to" + "type" : "CLASS", + "lbl" : "wholly dorsalized" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002324", + "id" : "http://purl.obolibrary.org/obo/PATO_0001952", "meta" : { "definition" : { - "val" : "A relationship that holds between entities participating in some developmental process (GO:0032502)", - "xrefs" : [ ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being arranged in two opposite rows (and hence in the same plane).", + "xrefs" : [ "ISBN:0881923214" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "developmentally related to" + "type" : "CLASS", + "lbl" : "distichous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000761", + "id" : "http://purl.obolibrary.org/obo/PATO_0001953", "meta" : { "definition" : { - "val" : "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A pattern quality inhering in a bearer by virtue of the bearer's consisting of paired parts that alternately cross each other.", + "xrefs" : [ "ISBN:0881923214" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "hypoactive", + "val" : "crosscutting", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "intersecting", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "intercrossing", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000760" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased behavioural activity" + "lbl" : "decussate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000760", + "id" : "http://purl.obolibrary.org/obo/PATO_0000622", "meta" : { "definition" : { - "val" : "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being upright in position or posture.", + "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "hyperactive", + "val" : "upright", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000761" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased behavioural activity" + "lbl" : "erect" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001628", + "id" : "http://purl.obolibrary.org/obo/PATO_0001950", "meta" : { "definition" : { - "val" : "A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's terminating gradually in a rounded end.", + "xrefs" : [ "ISBN:0881923214" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "inadequate", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001627" } ] }, "type" : "CLASS", - "lbl" : "insufficient" + "lbl" : "blunt" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001629", + "id" : "http://purl.obolibrary.org/obo/PATO_0001951", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being in opposition round a common axis.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "clumped", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "clustered", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "aggregated" + "lbl" : "whorled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001622", + "id" : "http://purl.obolibrary.org/obo/PATO_0000621", "meta" : { - "definition" : { - "val" : "A turgor which is relatively high.", - "xrefs" : [ "PATO:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high turgor", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001621" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "increased turgor" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000774", + "id" : "http://purl.obolibrary.org/obo/PATO_0000624", "meta" : { + "definition" : { + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's becoming joined together with an additional entity.", + "xrefs" : [ "PATOC:nw" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "introduced into", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "inserted", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete bizarre gate" + "lbl" : "inserted into" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000773", + "id" : "http://purl.obolibrary.org/obo/PATO_0001956", "meta" : { "definition" : { - "val" : "A discrimination quality in a bearer by virtue of the bearer's liking a perceived stimulus.", + "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits size variation or change.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "preference" + "lbl" : "variability of size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001623", + "id" : "http://purl.obolibrary.org/obo/PATO_0000623", "meta" : { "definition" : { - "val" : "A size quality inhering in a bearer by virtue of a part or parts of the bearer's being decreased in size due to reduction in tissue mass through wasting.", - "xrefs" : [ "Wiikipedia:Wasting", "Wikipedia:Atrophy" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's protruding or projecting from the body.", + "xrefs" : [ "sdvc:sdvc" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "atrophic", + "pred" : "hasRelatedSynonym", + "val" : "prolapsed", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "prolapse", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -18322,392 +18887,372 @@ } ] }, "type" : "CLASS", - "lbl" : "atrophied" + "lbl" : "exserted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000776", + "id" : "http://purl.obolibrary.org/obo/PATO_0001957", "meta" : { + "definition" : { + "val" : "A variability of size which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low variability of size", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001958" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete memory value" + "lbl" : "decreased variability of size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001620", + "id" : "http://purl.obolibrary.org/obo/PATO_0000626", "meta" : { "definition" : { - "val" : "A structural quality inhering in a cell or blood vessel or capillary by virtue of the bearer's being in a rigid state of fullness resulting from pressure of the contents against the wall or membrane.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being moved or displaced to one side so as to make lateral.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "turgor" + "lbl" : "lateralized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000775", + "id" : "http://purl.obolibrary.org/obo/PATO_0001954", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being linear, very narrow, tapering to a very fine point from a narrow base.", + "xrefs" : [ "ISBN:0881923214" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "needle-like", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "awl-shaped", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete learning value" + "lbl" : "subulate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001621", + "id" : "http://purl.obolibrary.org/obo/PATO_0001955", "meta" : { "definition" : { - "val" : "A turgor which is relatively low.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being narrowly triangular, wider at the apex and tapering toward the base.", + "xrefs" : [ "wordreference:wordreference" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low turgor", + "val" : "wedge-shaped", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001622" } ] }, "type" : "CLASS", - "lbl" : "decreased turgor" + "lbl" : "cuneate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001626", + "id" : "http://purl.obolibrary.org/obo/PATO_0000625", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of whether the bearer has enough functionality.", - "xrefs" : [ "PATO:GVG" ] + "val" : "An oriented quality inhering in a bearer by virtue of the bearer's being reversed in position, order, or condition.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "adequacy", + "val" : "backward", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "reversed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term and children should probably be obsoleted." } ] }, "type" : "CLASS", - "lbl" : "sufficiency" + "lbl" : "inverted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000778", + "id" : "http://purl.obolibrary.org/obo/PATO_0000639", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process.", + "xrefs" : [ "PATOC:PortlandMeetingFeb2015", "PATOC:mb" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "degeneration", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002038" } ] }, "type" : "CLASS", - "lbl" : "obsolete short term memory value" + "lbl" : "degenerate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001627", + "id" : "http://purl.obolibrary.org/obo/PATO_0000638", "meta" : { "definition" : { - "val" : "A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's consisting of blebbing of the nucleus and DNA fragmentation due to the cell undergoing a specific form of programmed cell death termed apoptosis.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "adequate", - "xrefs" : [ ] + "xrefs" : [ { + "val" : "GO:0006915" } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001628" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sufficient" + "lbl" : "apoptotic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000777", + "id" : "http://purl.obolibrary.org/obo/PATO_0001969", "meta" : { + "definition" : { + "val" : "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches terminating at the margin.", + "xrefs" : [ "Hickey:1988" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete long term memory value" + "lbl" : "craspedodromous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001624", + "id" : "http://purl.obolibrary.org/obo/PATO_0001963", "meta" : { "definition" : { - "val" : "A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s).", - "xrefs" : [ "PATO:MAH" ] + "val" : "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled backwards spirally on each side.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "having decreased function", - "xrefs" : [ ] - }, { - "pred" : "hasBroadSynonym", - "val" : "dysfunction", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "low functionality", - "xrefs" : [ ] - }, { - "pred" : "hasBroadSynonym", - "val" : "dysfunctional", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "impaired", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "lacks function of type", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "partial functionality", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001625" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001642" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001641" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001568" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001556" } ] }, "type" : "CLASS", - "lbl" : "decreased functionality" + "lbl" : "revolute" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001625", + "id" : "http://purl.obolibrary.org/obo/PATO_0000631", "meta" : { "definition" : { - "val" : "A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s).", - "xrefs" : [ "PATO:MAH" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being stretched out and lying at full length along the ground.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "prostrate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000630", + "meta" : { + "definition" : { + "val" : "A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally posterior structures.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high functionality", + "pred" : "hasRelatedSynonym", + "val" : "posterioralized", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001624" } ] }, "type" : "CLASS", - "lbl" : "increased functionality" + "lbl" : "wholly posterioralized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000779", + "id" : "http://purl.obolibrary.org/obo/PATO_0001964", "meta" : { + "definition" : { + "val" : "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled spirally downwards.", + "xrefs" : [ "ISBN:0881923214" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute locomotor activity value" + "lbl" : "circinate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000770", + "id" : "http://purl.obolibrary.org/obo/PATO_0000633", "meta" : { "definition" : { - "val" : "A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement.", + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000769" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000619" } ] }, "type" : "CLASS", - "lbl" : "uncoordinated" + "lbl" : "uncrowded" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000772", + "id" : "http://purl.obolibrary.org/obo/PATO_0001961", "meta" : { "definition" : { - "val" : "A preference quality in a bearer by virtue of the bearer's having no preference to a perceived stimulus.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's touching another entity.", + "xrefs" : [ "PATOC:wdahdul" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "contiguous", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "indifference" + "lbl" : "in contact with" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002314", + "id" : "http://purl.obolibrary.org/obo/PATO_0000632", "meta" : { "definition" : { - "val" : "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.", - "xrefs" : [ ] + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division by a longitudinal plane into similar halves.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "symmetric", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "similar pattern in both halves" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "inheres in part of" + "type" : "CLASS", + "lbl" : "symmetrical" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000771", + "id" : "http://purl.obolibrary.org/obo/PATO_0001962", "meta" : { "definition" : { - "val" : "A preference quality in a bearer by virtue of the bearer's disliking a perceived stimulus.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled inwards spirally on each side.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "aversion" + "lbl" : "involute" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000309", + "id" : "http://purl.obolibrary.org/obo/PATO_0001967", "meta" : { "definition" : { - "val" : "An age which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A branched quality inhering in a bearer by virtue of the bearer's having three or more primary branches diverging radially from a single point.", + "xrefs" : [ "Hickey:1988" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000308" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "young" + "lbl" : "actinodromous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000308", + "id" : "http://purl.obolibrary.org/obo/PATO_0000635", "meta" : { "definition" : { - "val" : "An age which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's not being confined or restricted to a particular location.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000309" } ] }, "type" : "CLASS", - "lbl" : "old" + "lbl" : "unlocalised" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001639", + "id" : "http://purl.obolibrary.org/obo/PATO_0001968", "meta" : { "definition" : { - "val" : "A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A branched quality inhering in a bearer by virtue of the bearer's having two or more parallel primary branches originate beside each other and converge apically.", + "xrefs" : [ "Hickey:1988" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001638" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "unnecessary (occurrent)" + "lbl" : "parallelodromous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001633", + "id" : "http://purl.obolibrary.org/obo/PATO_0000634", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear of an organism relative to another entity.", - "xrefs" : [ "PATOC:nw" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's involvement of only one part or side.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "superior (human head)", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "posterior (human torso)", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "posterior to" + "lbl" : "unilateral" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000785", + "id" : "http://purl.obolibrary.org/obo/PATO_0000637", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -18718,551 +19263,601 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete muscle function value" + "lbl" : "obsolete structure value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000301", + "id" : "http://purl.obolibrary.org/obo/PATO_0001965", "meta" : { + "definition" : { + "val" : "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being bent down upon their stalk.", + "xrefs" : [ "ISBN:0881923214" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute speed value" + "lbl" : "reclinate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000300", + "id" : "http://purl.obolibrary.org/obo/PATO_0000636", "meta" : { "definition" : { - "val" : "A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely.", + "val" : "A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally ventral structures.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "fixed", + "val" : "ventralized", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000299" } ] }, "type" : "CLASS", - "lbl" : "immobile" + "lbl" : "wholly ventralized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001634", + "id" : "http://purl.obolibrary.org/obo/PATO_0001966", "meta" : { "definition" : { - "val" : "A quality of a single physical entity inhering in a bearer by virtue of whether the bearer is essential or indispensable.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A curled quality inhering in a bearer by virtue of the bearer's one edge of its surface being wholly rolled up in another.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "necessity (continuant)" + "lbl" : "convolute" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000784", + "id" : "http://purl.obolibrary.org/obo/PATO_0001960", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's parts or projections being interlocked; for example, the fingers of two hands that are clasped.", + "xrefs" : [ "PATOC:wdahdul" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete excretory function value" + "lbl" : "interdigitated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000787", + "id" : "http://purl.obolibrary.org/obo/IAO_0000589", "meta" : { + "definition" : { + "val" : "An alternative name for a class or property which is unique across the OBO Foundry.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Chris Mungall" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBO Foundry " + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "OBO foundry unique label" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Bjoern Peters" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools ." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Melanie Courtot" } ] }, - "type" : "CLASS", - "lbl" : "obsolete neurobehavioral function value" + "type" : "PROPERTY", + "lbl" : "OBO foundry unique label" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001631", + "id" : "http://purl.obolibrary.org/obo/ENVO_01000313", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] + "definition" : { + "val" : "An anthropogenic environment is an environmental system which is the product of human activity.", + "xrefs" : [ ] + } }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "anthropogenic environment" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000303", + "id" : "http://purl.obolibrary.org/obo/PATO_0001905", "meta" : { "definition" : { - "val" : "A speed which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "fast speed", - "xrefs" : [ ] - }, { "pred" : "hasExactSynonym", - "val" : "high speed", + "val" : "having physical part", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000304" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased speed" + "lbl" : "has normal numbers of parts of type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001632", + "id" : "http://purl.obolibrary.org/obo/PATO_0001906", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front of an organism relative to another entity.", - "xrefs" : [ "PATOC:nw" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's participation in movement.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "preceding", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "ventral_to", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "anterior to" + "lbl" : "movement quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000786", + "id" : "http://purl.obolibrary.org/obo/PATO_0001903", "meta" : { + "definition" : { + "val" : "A directional quality inhering in a bearer by virtue of the bearer's having two directions.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete neural function value" + "lbl" : "bi-directional" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000302", + "id" : "http://purl.obolibrary.org/obo/PATO_0001904", "meta" : { + "definition" : { + "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction approximating the shape of a circle.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative speed value" + "lbl" : "circling direction" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000305", + "id" : "http://purl.obolibrary.org/obo/PATO_0001909", "meta" : { + "definition" : { + "val" : "A nucleate quality inhering in a bearer by virtue of the bearer's having three nuclei.", + "xrefs" : [ "thefreedictionary:thefreedictionary" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete age value" + "lbl" : "trinucleate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001637", + "id" : "http://purl.obolibrary.org/obo/PATO_0001907", "meta" : { "definition" : { - "val" : "A quality of single process inhering in a bearer by virtue of whether the bearer is essential or indispensable.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's being like the surface of a compact mass of grapes.", + "xrefs" : [ "PATOC:cvs" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "necessity of occurrent" + "lbl" : "botryoidal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000789", + "id" : "http://purl.obolibrary.org/obo/PATO_0001908", "meta" : { + "definition" : { + "val" : "A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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"type" : "PROPERTY", - "lbl" : "causally upstream of, positive effect" + "type" : "CLASS", + "lbl" : "circling" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000782", + "id" : "http://purl.obolibrary.org/obo/PATO_0001927", "meta" : { + "definition" : { + "val" : "A fluorescence which is lower than normal.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low fluorescence", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001926" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete defensive function value" + "lbl" : "decreased fluorescence" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0098796", + "id" : "http://purl.obolibrary.org/obo/PATO_0001928", "meta" : { "definition" : { - "val" : "Any protein complex that is part of a membrane.", - "xrefs" : [ "GOC:dos" ] + "val" : "A texture quality inhering in a bearer by virtue of a local accumulation of fluid underneath the surface of the bearer.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "blistering", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "membrane protein complex" + "lbl" : "blistered" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0098797", + "id" : "http://purl.obolibrary.org/obo/PATO_0001925", "meta" : { "definition" : { - "val" : "Any protein complex that is part of the plasma membrane.", - "xrefs" : [ "GOC:dos" ] + "val" : "A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell.", + "xrefs" : [ "PATOC:CJM" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This quality either inheres directly in the surface, or in the entity that has the surface. For example, to say that a particular fly wing is curved is shorthand for saying the wing has a surface which is curved." } ] }, "type" : "CLASS", - "lbl" : "plasma membrane protein complex" + "lbl" : "surface feature shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000319", + "id" : "http://purl.obolibrary.org/obo/PATO_0001926", "meta" : { "definition" : { - "val" : "A color consisting of green and blue hue.", + "val" : "A fluorescence which is higher than normal.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high fluorescence", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001927" } ] }, "type" : "CLASS", - "lbl" : "cyan" + "lbl" : "increased fluorescence" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000312", + "id" : "http://purl.obolibrary.org/obo/PATO_0001929", "meta" : { + "definition" : { + "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits shape variation or change.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete color intensity value" + "lbl" : "variability of shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000796", + "id" : "http://purl.obolibrary.org/obo/PATO_0001920", "meta" : { + "definition" : { + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the abdomen of an organism.", + "xrefs" : [ "PATOC:mb" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete regeneration value" + "lbl" : "mislocalised ventrally" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001644", + "id" : "http://purl.obolibrary.org/obo/PATO_0001923", "meta" : { + "definition" : { + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the side of an organism.", + "xrefs" : [ "PATOC:mb" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001598" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "mislocalised laterally" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000795", + "id" : "http://purl.obolibrary.org/obo/PATO_0001924", "meta" : { + "definition" : { + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the middle of an organism.", + "xrefs" : [ "PATOC:mb" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete healing value" + "lbl" : "mislocalised medially" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001645", + "id" : "http://purl.obolibrary.org/obo/PATO_0001921", "meta" : { "definition" : { - "val" : "A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary into the surface or boundary of another entity.", - "xrefs" : [ "PATOC:nc" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the front of an organism.", + "xrefs" : [ "PATOC:mb" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "protruding into" + "lbl" : "mislocalised anteriorly" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000311", + "id" : "http://purl.obolibrary.org/obo/PATO_0001922", + "meta" : { + "definition" : { + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the rear of an organism.", + "xrefs" : [ "PATOC:mb" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "mislocalised posteriorly" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001097", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -19273,22 +19868,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete color hue value" + "lbl" : "obsolete relative force value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000798", + "id" : "http://purl.obolibrary.org/obo/PATO_0001098", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete defecation value" + "lbl" : "obsolete absolute force" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000314", + "id" : "http://purl.obolibrary.org/obo/PATO_0001095", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -19299,24 +19894,35 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete flourescence value" + "lbl" : "obsolete force value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001642", + "id" : "http://purl.obolibrary.org/obo/PATO_0001096", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001624" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute force value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001099", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete relative force" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000313", + "id" : "http://purl.obolibrary.org/obo/PATO_0001090", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -19327,24 +19933,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete color saturation value" + "lbl" : "obsolete absolute elasticity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001643", + "id" : "http://purl.obolibrary.org/obo/PATO_0001093", "meta" : { - "definition" : { - "val" : "A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "stubby" + "lbl" : "obsolete relative flux value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000797", + "id" : "http://purl.obolibrary.org/obo/PATO_0001094", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -19355,9 +19959,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete urination value" + "lbl" : "obsolete absolute flux value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000316", + "id" : "http://purl.obolibrary.org/obo/PATO_0001091", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -19368,233 +19972,233 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative color value" + "lbl" : "obsolete relative elasticity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001648", + "id" : "http://purl.obolibrary.org/obo/PATO_0001092", "meta" : { - "definition" : { - "val" : "An 1-D extent quality which is equal to the length of the closed curve of a circle.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "circumference" + "lbl" : "obsolete flux value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000799", + "id" : "http://purl.obolibrary.org/obo/PATO_0050000", "meta" : { + "definition" : { + "val" : "The number of repeated events per unit time, occurring in a repeating series. (e.g. the number of heart beats occurring over 1 minute)", + "xrefs" : [ "https://orcid.org/0000-0002-9943-9018" ] + }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete muscle elevation value" + "lbl" : "rate of occurence" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000315", + "id" : "http://purl.obolibrary.org/obo/PATO_0050001", "meta" : { + "definition" : { + "val" : "The rate of output of a continuous process. Example include: growth rate, cell migration rate, enzyme reaction rate.", + "xrefs" : [ "https://orcid.org/0000-0002-9943-9018" ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete color pattern value" + "lbl" : "rate of continuous process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001649", + "id" : "http://purl.obolibrary.org/obo/PATO_0001059", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the side.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "curved lateral" + "lbl" : "obsolete relative efficiency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001646", + "id" : "http://purl.obolibrary.org/obo/PATO_0001053", "meta" : { "definition" : { - "val" : "A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary and outwards in relation to the physical space occupied by another entity.", - "xrefs" : [ "PATOC:nc" ] + "val" : "An angle which is less than 180 degrees to another entity.", + "xrefs" : [ "maths.org:maths.org" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "extruding from", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "exits through", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "exposed", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "protruding out of" + "lbl" : "convex angle to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000318", + "id" : "http://purl.obolibrary.org/obo/PATO_0002384", "meta" : { "definition" : { - "val" : "A color hue with low wavelength of that portion of the visible spectrum lying between green and indigo, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 490 nanometers.", - "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] + "val" : "Presence of long chain aliphatic lipids on the surface of an organism.", + "xrefs" : [ "PATOC:lm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-07-05T03:18:21Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "blue" + "lbl" : "waxy" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000317", + "id" : "http://purl.obolibrary.org/obo/PATO_0001054", "meta" : { "definition" : { - "val" : "A color that lacks any hues as parts.", + "val" : "A convex angle that is inside two adjacent sides of a polygon.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "black" + "lbl" : "internal angle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001647", + "id" : "http://purl.obolibrary.org/obo/PATO_0002385", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines, usually parallel, with at least one salient angle on the margin", + "xrefs" : [ "FNA:FNA" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000052" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-07-05T05:17:07Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - } ] - }, - "type" : "CLASS" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000790", - "meta" : { - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete heart rate value" + "lbl" : "striate-angular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001640", + "id" : "http://purl.obolibrary.org/obo/PATO_0002382", "meta" : { + "definition" : { + "val" : "A waxiness which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001511" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-07-05T03:18:03Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002383" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "increased waxiness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000792", + "id" : "http://purl.obolibrary.org/obo/PATO_0001051", "meta" : { + "definition" : { + "val" : "An angle which is less than 90 degrees.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete repair function value" + "lbl" : "acute angle to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001641", + "id" : "http://purl.obolibrary.org/obo/PATO_0002383", "meta" : { + "definition" : { + "val" : "A waxiness which is relatively low.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-07-05T03:18:14Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001624" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002382" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000791", - "meta" : { - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete immune function value" + "lbl" : "decreased waxiness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000794", + "id" : "http://purl.obolibrary.org/obo/PATO_0001052", "meta" : { + "definition" : { + "val" : "An angle which is between 90 degrees and 180 degrees to another entity.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete immunodeficient value" + "lbl" : "obtuse angle to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000310", + "id" : "http://purl.obolibrary.org/obo/PATO_0002388", "meta" : { + "definition" : { + "val" : "Being supported by a peduncle or stalk.", + "xrefs" : [ "PATOC:GV" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-10-12T01:10:41Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete color value" + "lbl" : "pedunculate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000793", + "id" : "http://purl.obolibrary.org/obo/PATO_0001057", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -19605,9 +20209,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete immubocompetent value" + "lbl" : "obsolete relative acceleration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000727", + "id" : "http://purl.obolibrary.org/obo/PATO_0001058", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -19618,74 +20222,96 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete behavioral function value" + "lbl" : "obsolete absolute acceleration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000726", + "id" : "http://purl.obolibrary.org/obo/PATO_0002389", "meta" : { + "definition" : { + "val" : "Growing horizontal to the ground without setting roots.", + "xrefs" : [ "PATO:PG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-10-12T01:33:50Z" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete autonomic function value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000729", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete physiological function value" + "lbl" : "procumbent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000728", + "id" : "http://purl.obolibrary.org/obo/PATO_0002386", "meta" : { + "definition" : { + "val" : "A concave 3-D shape that inheres in the bearer by virtue of the bearer's shape that is wider at one end and narrow in the middle.", + "xrefs" : [ "PATOC:AD" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "anvil shaped", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-07-23T03:13:41Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete metabolic function value" + "lbl" : "anvil" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000721", + "id" : "http://purl.obolibrary.org/obo/PATO_0001055", "meta" : { + "definition" : { + "val" : "An angular placement quality inhering in a bearer by virtue of the bearer's placement at an angle that is greater than 180 degrees but less than 360 degrees to another entity.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute yield value" + "lbl" : "reflex angle to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000720", + "id" : "http://purl.obolibrary.org/obo/PATO_0002387", "meta" : { + "definition" : { + "val" : "Extremely acute and aggressive onset of a pathological process.", + "xrefs" : [ "PATOC:PNS" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "per-acute", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-09-15T02:57:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete yield value" + "lbl" : "peracute" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000723", + "id" : "http://purl.obolibrary.org/obo/PATO_0001056", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -19696,27 +20322,30 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete high yield" + "lbl" : "obsolete number" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0007154", + "id" : "http://purl.obolibrary.org/obo/PATO_0002380", "meta" : { "definition" : { - "val" : "Any process that mediates interactions between a cell and its surroundings. 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"pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-11-20T04:13:32Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete function value" + "lbl" : "mislocalized abaxially" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000724", + "id" : "http://purl.obolibrary.org/obo/PATO_0001064", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -19753,128 +20411,117 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete low yield" + "lbl" : "obsolete absolute flux" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0042325", + "id" : "http://purl.obolibrary.org/obo/PATO_0002396", "meta" : { "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule.", - "xrefs" : [ "GOC:jl" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the axis of an organism.", + "xrefs" : [ "PATOC:EH" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - 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"id" : "http://purl.obolibrary.org/obo/PATO_0000738", + "id" : "http://purl.obolibrary.org/obo/PATO_0001062", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete enzyme function value" + "lbl" : "obsolete absolute elasticity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000737", + "id" : "http://purl.obolibrary.org/obo/PATO_0001063", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete functional value" + "lbl" : "obsolete relative flux" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000739", + "id" : "http://purl.obolibrary.org/obo/PATO_0002394", "meta" : { + "definition" : { + "val" : "A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus.", + "xrefs" : [ "PATOC:LC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-11-15T05:33:05Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002393" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute enzyme function value" + "lbl" : "decreased tolerance to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000730", + "id" : "http://purl.obolibrary.org/obo/PATO_0001068", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -19885,22 +20532,30 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative function value" + "lbl" : "obsolete relative strain" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000732", + "id" : "http://purl.obolibrary.org/obo/PATO_0002399", "meta" : { + "definition" : { + "val" : "A rotation quality inhering in a bearer by virtue of being rotated towards the front and the middle of an organism.", + "xrefs" : [ "PATOC:JI" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-07T05:41:01Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete body tone value" + "lbl" : "anteromedially rotated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000731", + "id" : "http://purl.obolibrary.org/obo/PATO_0001069", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -19911,91 +20566,71 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete body position value" + "lbl" : "obsolete relative density" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000734", + "id" : "http://purl.obolibrary.org/obo/PATO_0001066", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete abdominal tone value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000733", - "meta" : { - "basicPropertyValues" : [ { + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete piloerection value" + "lbl" : "obsolete absolute stiffness" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0007165", + "id" : "http://purl.obolibrary.org/obo/PATO_0002397", "meta" : { "definition" : { - "val" : "The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. 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Note that specific transcription factors may be annotated to this term, but core/general transcription machinery such as RNA polymerase should not." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0023033" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-07T05:32:18Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "signal transduction" + "lbl" : "subcircular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000736", + "id" : "http://purl.obolibrary.org/obo/PATO_0002398", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-07T05:34:16Z" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete dysfunctional value" + "lbl" : "obsolete " }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000735", + "id" : "http://purl.obolibrary.org/obo/PATO_0001067", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -20006,22 +20641,30 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete limb tone value" + "lbl" : "obsolete absolute strain" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000749", + "id" : "http://purl.obolibrary.org/obo/PATO_0002391", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having three rays or radiating branches.", + "xrefs" : [ "merriam-webster:merriam-webster" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-11-15T05:19:32Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete gait value" + "lbl" : "triradiate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000748", + "id" : "http://purl.obolibrary.org/obo/PATO_0001060", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -20032,35 +20675,64 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete discrimination value" + "lbl" : "obsolete absolute efficiency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000741", + "id" : "http://purl.obolibrary.org/obo/PATO_0002392", "meta" : { + "definition" : { + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located on a sloping line joining two nonconsecutive points of an entity relative to another entity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-11-15T05:21:51Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "diagonal to" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001061", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete high enzyme function value" + "lbl" : "obsolete relative elasticity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000740", + "id" : "http://purl.obolibrary.org/obo/PATO_0002390", "meta" : { + "definition" : { + "val" : "A length quality which is equal to the length of any straight line segment that passes from the center of a circle to any endpoint on the circular boundary. The radius is half of the diameter.", + "xrefs" : [ "PATO:DS" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-11-15T05:17:15Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative enzyme function value" + "lbl" : "radius" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000743", + "id" : "http://purl.obolibrary.org/obo/PATO_0001075", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -20071,9 +20743,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete arousal value" + "lbl" : "obsolete absolute momentum" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000742", + "id" : "http://purl.obolibrary.org/obo/PATO_0001076", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -20084,9 +20756,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete low enzyme function value" + "lbl" : "obsolete relative momentum" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000745", + "id" : "http://purl.obolibrary.org/obo/PATO_0001073", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -20097,9 +20769,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete behavioral quality value" + "lbl" : "obsolete relative impulse" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000744", + "id" : "http://purl.obolibrary.org/obo/PATO_0001074", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -20110,9 +20782,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete balance value" + "lbl" : "obsolete absolute impulse" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000747", + "id" : "http://purl.obolibrary.org/obo/PATO_0001079", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -20123,153 +20795,152 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete coordination value" + "lbl" : "obsolete absolute work" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000746", + "id" : "http://purl.obolibrary.org/obo/PATO_0001077", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete consumption value" + "lbl" : "obsolete absolute pressure" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001608", + "id" : "http://purl.obolibrary.org/obo/PATO_0001078", "meta" : { - "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being marked by, consisting of, or diversified with patches.", - "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "patchy" + "lbl" : "obsolete relative pressure" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000759", + "id" : "http://purl.obolibrary.org/obo/PATO_0001071", "meta" : { - "definition" : { - "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting paralytic behaviour when subjected to mechanical shock.", - "xrefs" : [ "PATOC:flybase" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "bang sensitive" + "lbl" : "obsolete relative energy" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001609", + "id" : "http://purl.obolibrary.org/obo/PATO_0001072", "meta" : { - "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being scattered; spread irregularly, and at a distance from each other.", - "xrefs" : [ "biology.lsu:biology.lsu" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sparse" + "lbl" : "obsolete absolute energy" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001606", + "id" : "http://purl.obolibrary.org/obo/PATO_0001070", "meta" : { - "definition" : { - "val" : "A coating which is oily and slippery.", - "xrefs" : [ ".answers.com:.answers.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "greasy" + "lbl" : "obsolete absolute density" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001607", + "id" : "http://purl.obolibrary.org/obo/PATO_0001086", "meta" : { - "definition" : { - "val" : "A tangled quality inhering in a bearer by virtue of the bearer's being not possible to unravel.", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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}, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete mating value" + "lbl" : "obsolete relative acceleration value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000751", + "id" : "http://purl.obolibrary.org/obo/PATO_0001085", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute acceleration value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001088", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete locomotor activity value" + "lbl" : "obsolete absolute efficiency value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001601", + "id" : "http://purl.obolibrary.org/obo/PATO_0001089", "meta" : { - "definition" : { - "val" : "A rotation quality inhering in a bearer by virtue of being rotated towards the front of an organism.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "anteriorly rotated" + "lbl" : "obsolete elasticity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000754", + "id" : "http://purl.obolibrary.org/obo/PATO_0001082", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -20280,9 +20951,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete startle response" + "lbl" : "obsolete damage value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000753", + "id" : "http://purl.obolibrary.org/obo/PATO_0001083", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -20293,1145 +20964,1024 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete spontaneous activity value" + "lbl" : "obsolete acceleration value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001604", + "id" : "http://purl.obolibrary.org/obo/PATO_0001080", "meta" : { - "definition" : { - "val" : "A life span which is relatively low.", - "xrefs" : [ "PATO:GVG" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low life span", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001603" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "decreased life span" + "lbl" : "obsolete relative work" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000756", + "id" : "http://purl.obolibrary.org/obo/PATO_0001081", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete transfer arousal value" + "lbl" : "obsolete physical measure value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001605", + "id" : "http://purl.obolibrary.org/obo/RO_0002090", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/BFO_0000063" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "ends_at_start_of" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "meets" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately precedes" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001017", "meta" : { - 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"id" : "http://purl.obolibrary.org/obo/PATO_0002061", + "id" : "http://purl.obolibrary.org/obo/PATO_0001039", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete absolute ratio" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002062", + "id" : "http://purl.obolibrary.org/obo/PATO_0001037", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-06-05T09:16:46Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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"val" : "2009-09-18T02:04:48Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "movement behavioral quality" + "lbl" : "obsolete ratio" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002077", + "id" : "http://purl.obolibrary.org/obo/PATO_0002369", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being positioned with multiple entities of the same type above and below.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A viviparous organism that has given birth two or more times.", + "xrefs" : [ "wiki:http://en.wikipedia.org/wiki/Parity_(biology)" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - 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"val" : "A quality inhering in a bearer by virtue of the bearer's having an empty space or cavity within.", - "xrefs" : [ "url:http://www.merriam-webster.com/dictionary/hollow" ] + "val" : "A medium brown color with a metallic sheen, resembles the actual alloy bronze.", + "xrefs" : [ "PATO:LC" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-05-03T11:08:18Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-18T02:19:20Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "hollow" + "lbl" : "bronze" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002079", + "id" : "http://purl.obolibrary.org/obo/PATO_0001032", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" @@ -21439,683 +21989,630 @@ }, "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002072", + "id" : "http://purl.obolibrary.org/obo/PATO_0025000", "meta" : { "definition" : { - "val" : "An affinity which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be used as a safe means of hydration.", + "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "drinkability", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002071" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-18T01:30:11Z" - } ] - }, - "type" : "CLASS", - "lbl" : "decreased affinity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002073", - "meta" : { - "definition" : { - "val" : "A molecular quality that arises from the synergistic strength of bond affinities between multiple bond interactions.", - "xrefs" : [ "Wikipedia:Wikipedia" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "2015-09-01T16:16:44Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-18T01:41:44Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "pbuttigieg" } ] }, "type" : "CLASS", - "lbl" : "avidity" + "lbl" : "potability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002070", + "id" : "http://purl.obolibrary.org/obo/PATO_0002360", "meta" : { "definition" : { - "val" : "A molecular quality that arises from the molecular attraction exerted between two atoms or compounds.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A disposition that can be compared on a linear scale - that is that it can be increased or decreased.", + "xrefs" : [ "PATOC:RH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-03-16T06:31:50Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-18T01:16:16Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "affinity" + "lbl" : "tendency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002071", + "id" : "http://purl.obolibrary.org/obo/PATO_0002361", "meta" : { "definition" : { - "val" : "An affinity which is relatively high.", + "val" : "A tendency which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-18T01:29:42Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002362" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-03-16T06:31:57Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002072" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "increased affinity" + "lbl" : "increased tendency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002087", + "id" : "http://purl.obolibrary.org/obo/PATO_0001030", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being short and wide and tapered distally.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A physical quality that exists by virtue of the rate of flow of the bearer across a given surface.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-30T09:53:43Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "bullet-shaped" + "lbl" : "flux" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002088", + "id" : "http://purl.obolibrary.org/obo/PATO_0025001", "meta" : { "definition" : { - "val" : "A structure quality inhering in a bearer by virtue of the bearer's body consisting of one sac.", - "xrefs" : [ "mondofacto:mondofacto" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration.", + "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "undrinkable", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0025002" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "pbuttigieg" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-01T03:00:20Z" + "val" : "2015-09-01T16:18:57Z" } ] }, "type" : "CLASS", - "lbl" : "monocystic" + "lbl" : "non-potable" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002085", + "id" : "http://purl.obolibrary.org/obo/PATO_0002366", "meta" : { "definition" : { - "val" : "The period before death of the organism.", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "Male quality of having complete, unaltered reproductive organs.", + "xrefs" : [ "PATOC:MF" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-25T11:31:13Z" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Terms were requested by the OBI consortium but it was later decided that the term was not reflecting a quality rather what it might be refered to as a \"conferred quality\"." + "val" : "2012-05-03T11:19:06Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete pre-mortem" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002086", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000694" - } ] - }, - "type" : "CLASS" + "lbl" : "intact male" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002089", + "id" : "http://purl.obolibrary.org/obo/PATO_0001035", "meta" : { "definition" : { - "val" : "A structure quality inhering in a bearer by virtue of the bearer's body containing more than one cyst - formations of an epithelium bounded cavity not associated with neoplasia.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "multicystic", + "val" : "force amplitude", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-01T03:02:54Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "polycystic" + "lbl" : "force" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002080", + "id" : "http://purl.obolibrary.org/obo/PATO_0025002", "meta" : { "definition" : { - "val" : "A broken quality inhering in a bearer by virtue of the bearer's being seperated into two contiguous wholes.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration.", + "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "drinkable", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2015-09-01T16:19:02Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0025001" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-21T10:18:11Z" + "val" : "pbuttigieg" } ] }, "type" : "CLASS", - "lbl" : "broken into two pieces" + "lbl" : "potable" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002083", + "id" : "http://purl.obolibrary.org/obo/PATO_0002367", "meta" : { "definition" : { - "val" : "Having extra or fewer parts.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Male quality of being incapable to reproduce because of functional loss of the testicles from surgical removal or chemical means.", + "xrefs" : [ "PATOC:MF" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-21T10:41:58Z" + "val" : "2012-05-03T11:22:29Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "altered number of" + "lbl" : "castrated male" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002084", + "id" : "http://purl.obolibrary.org/obo/PATO_0001036", "meta" : { - "definition" : { - "val" : "The period after death of the organism.", - "xrefs" : [ "thefreedictionary:thefreedictionary" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-25T11:29:21Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Terms were requested by the OBI consortium but it was later decided that the term was not reflecting a quality rather what it might be refered to as a \"conferred quality\"." } ] }, "type" : "CLASS", - "lbl" : "obsolete post-mortem" + "lbl" : "obsolete relative life span" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002081", + "id" : "http://purl.obolibrary.org/obo/PATO_0002364", "meta" : { "definition" : { - "val" : "A broken quality inhering in a bearer by virtue of the bearer's being broken into multiple contiguous wholes.", - "xrefs" : [ "PATOC:GJM" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-21T10:18:51Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001154" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-04-18T06:31:29Z" } ] }, "type" : "CLASS", - "lbl" : "shattered" + "lbl" : "shortened" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002082", + "id" : "http://purl.obolibrary.org/obo/PATO_0001033", "meta" : { - "definition" : { - "val" : "A broken quality inhering in a bearer by virtue of the bearer's being still one contiguous whole but structurally damaged such that in danger of become two or more.", - "xrefs" : [ "PATOC:CJM" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-21T10:20:06Z" } ] }, "type" : "CLASS", - "lbl" : "partially broken" + "lbl" : "obsolete stiffness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002098", + "id" : "http://purl.obolibrary.org/obo/PATO_0002365", "meta" : { "definition" : { - "val" : "A disposition inhering in a tumour by virtue of the bearer's disposition to spread and invade distant tissues.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Female quality of having complete, unaltered reproductive organs", + "xrefs" : [ "PATOC:MF" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T12:54:48Z" + "val" : "2012-05-03T11:18:41Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "neoplastic, metastatic" + "lbl" : "intact female" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002099", + "id" : "http://purl.obolibrary.org/obo/PATO_0001034", "meta" : { "definition" : { - "val" : "A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type.", + "val" : "A physical quality inhering in a bearer by virtue of the relative change in the bearer's length or the bearer's volume when being stretched or squashed.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T12:58:54Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002100" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"val" : "An osmolality which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Having a shape that resembles a many-lobed \"berry,\" such as a raspberry.", + "xrefs" : [ "wikipedia:https://en.wikipedia.org/wiki/Acinus" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low osmolality", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "gkoutos" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002029" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-01-27T10:55:33Z" + "val" : "2012-07-05T02:58:05Z" + } ] + }, + "type" : "CLASS", + "lbl" : "acinus" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001047", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased osmolality" + "lbl" : "obsolete absolute resistance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001174", + "id" : "http://purl.obolibrary.org/obo/PATO_0001044", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -22126,47 +22623,59 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete urine composition" + "lbl" : "obsolete absolute power" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002021", + "id" : "http://purl.obolibrary.org/obo/PATO_0002375", "meta" : { "definition" : { - "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a cone (a 3-D shape with a round cross section that tapers).", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Cone_(geometry)" ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a trumpet.", + "xrefs" : [ "PATOC:DS" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "xrefs" : [ { - "val" : "Image:http://upload.wikimedia.org/wikipedia/commons/d/d2/Cone_3d.png" - } ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "cone-shaped", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-07-05T02:45:17Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "conical" + "lbl" : "trumpet-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002022", + "id" : "http://purl.obolibrary.org/obo/PATO_0002376", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a minute projection (villus).", - "xrefs" : [ "PATOC:PEM" ] + "val" : "A structure quality inhering in a bearer by virtue of the bearer's being filled with air.", + "xrefs" : [ "PATOC:CVS" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "air-filled", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-07-05T02:55:10Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002377" } ] }, "type" : "CLASS", - "lbl" : "villiform" + "lbl" : "inflated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001175", + "id" : "http://purl.obolibrary.org/obo/PATO_0001045", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -22177,393 +22686,415 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete urine composition" + "lbl" : "obsolete relative power" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001172", + "id" : "http://purl.obolibrary.org/obo/PATO_0002370", "meta" : { "definition" : { - "val" : "An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way.", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "The number of time that a viviparous organism has given birth.", + "xrefs" : [ "wiki:http://en.wikipedia.org/wiki/Parity_(biology)" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001171" - } ] - }, - "type" : "CLASS", - "lbl" : "inelastic" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001173", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-05-03T11:27:56Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete urine glucose composition value" + "lbl" : "parity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002020", + "id" : "http://purl.obolibrary.org/obo/PATO_0002304", "meta" : { "definition" : { - "val" : "Pink color having high brightness and low saturation.", + "val" : "A quality of a process that has a value that is increased compared to normal or average.", "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-16T06:53:08Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002302" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "pale pink" + "lbl" : "increased process quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002025", + "id" : "http://purl.obolibrary.org/obo/PATO_0002305", "meta" : { "definition" : { - "val" : "A convex angle that is formed by one side of a polygon and a line extended from an adjacent side.", - "xrefs" : [ "http://en.wikipedia.org/wiki/Internal_angle" ] + "val" : "A quality of an object that has a value that is increased compared to normal or average.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-16T06:54:01Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "external angle" + "lbl" : "increased object quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001178", + "id" : "http://purl.obolibrary.org/obo/PATO_0002302", "meta" : { "definition" : { - "val" : "A resistance quality inhering in a bearer by virtue of the bearer's resistance to a stimulus.", + "val" : "A quality of a process that has a value that is decreased compared to normal or average.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "resistant", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002304" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-16T06:50:59Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "resistant to" + "lbl" : "decreased process quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002026", + "id" : "http://purl.obolibrary.org/obo/PATO_0002303", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time.", + "val" : "A quality of an object that has a value that is decreased compared to normal or average.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001818" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2008-12-18T12:49:19Z" + "val" : "2011-06-16T06:51:54Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "non-progressive" + "lbl" : "decreased object quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001179", + "id" : "http://purl.obolibrary.org/obo/PATO_0002308", "meta" : { + "definition" : { + "val" : "A triangular quality inhering in a bearer by virtue of the bearer's having all sides of unequal length.", + "xrefs" : [ "PATOC:JB" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-27T11:24:24Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete immune" + "lbl" : "scalene triangular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001176", + "id" : "http://purl.obolibrary.org/obo/PATO_0002309", "meta" : { + "definition" : { + "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a by virtue of the bearer's exhibiting a consistently sized and approximately round cross-section along its length, which is many times larger than its diameter.", + "xrefs" : [ "PATOC:DC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that a fiber shaped object may take any circuitous or straight path through space (think of a length of string or rope)." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-09-09T04:50:10Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete deaf" + "lbl" : "fiber shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002023", + "id" : "http://purl.obolibrary.org/obo/PATO_0002306", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an apical-basal axis.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A triangular quality inhering in a bearer by virtue of the bearer's having all sides of the same length.", + "xrefs" : [ "PATOC:JB" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-27T11:22:50Z" } ] }, "type" : "CLASS", - "lbl" : "apical-basal polarity" + "lbl" : "equilateral triangular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002024", + "id" : "http://purl.obolibrary.org/obo/PATO_0002307", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the anterior-posterior axis.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A triangular quality inhering in a bearer by virtue of the bearer's having two sides have the same length.", + "xrefs" : [ "PATOC:JB" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "rostral-caudal polarity", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "superior-caudal polarity (human torso)", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-27T11:23:52Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "anterior-posterior polarity" + "lbl" : "isosceles triangular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001177", + "id" : "http://purl.obolibrary.org/obo/PATO_0002300", "meta" : { + "definition" : { + "val" : "A quality that has a value that is increased compared to normal or average.", + "xrefs" : [ "PATOC:GVG" ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002301" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-16T06:39:43Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete blind" + "lbl" : "increased quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001170", + "id" : "http://purl.obolibrary.org/obo/PATO_0002301", "meta" : { + "definition" : { + "val" : "A quality that has a value that is decreased compared to normal or average.", + "xrefs" : [ "PATOC:GVG" ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-16T06:40:15Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002300" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete numerical value" + "lbl" : "decreased quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001171", + "id" : "http://purl.obolibrary.org/obo/PATO_0002315", "meta" : { "definition" : { - "val" : "An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way.", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's resembling the end of a brush with a multitude of bristles.", + "xrefs" : [ "PATOC:BF" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-03T03:59:59Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001172" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "elastic" + "lbl" : "brush-like shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002038", + "id" : "http://purl.obolibrary.org/obo/PATO_0002316", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer whose structure which does not deteriorate.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Being separate or discrete from other skeletal elements.", + "xrefs" : [ "PATOC:WD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "not degenerate", + "pred" : "hasRelatedSynonym", + "val" : "free", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000639" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-02-03T11:14:54Z" + "val" : "2011-10-03T04:17:08Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "non-degenerate" + "lbl" : "autogenous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002039", + "id" : "http://purl.obolibrary.org/obo/PATO_0002313", "meta" : { "definition" : { - "val" : "A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Having or resembling the shape of a telescope.", + "xrefs" : [ "PATOC:BF" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002040" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-03T03:49:26Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "biconcave" + "lbl" : "telescopic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001185", + "id" : "http://purl.obolibrary.org/obo/PATO_0002314", "meta" : { "definition" : { - "val" : "A maturity quality inhering in a bearer by virtue of the bearer's indirect development, undergoing metamorphosis.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Larval" ] + "val" : "Having the nature or characteristic of, a ligament; composed of the tissue proper to ligaments.", + "xrefs" : [ "PATOC:BF" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-03T03:57:39Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "larval" + "lbl" : "ligamentous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002032", + "id" : "http://purl.obolibrary.org/obo/PATO_0002319", "meta" : { "definition" : { - "val" : "A reflectivity quality inhering in light by virtue of the bearer's scattering occurring at small angle to the incident beam.", - "xrefs" : [ "PATOC:mc" ] + "val" : "A shape with properties between those of a square and those of a circle.", + "xrefs" : [ "wikipedia:Squircle" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-12T12:47:48Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "George Gkoutos" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-01-27T11:38:49Z" - } ] - }, - "type" : "CLASS", - "lbl" : "forward scatter" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001186", - "meta" : { - "definition" : { - "val" : "A maturity quality inhering in a bearer by virtue of the bearer's being at the age immediately before puberty.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "prepubescent" + "lbl" : "squircle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002033", + "id" : "http://purl.obolibrary.org/obo/PATO_0002317", "meta" : { "definition" : { - "val" : "A reflective quality that is the light scattering occurring at wide angle (around 90 degrees) to the incident beam.", - "xrefs" : [ "PATOC:mc" ] + "val" : "A convex quadrilateral is a parallelogram if and only if any one of the following statements are true:\n1. Each diagonal divides the quadrilateral into two congruent triangles with the same orientation.\n2. The opposite sides are congruent in pairs.\n3. The diagonals bisect each other.\n4. The opposite angles are congruent in pairs.\n5. The sum of the squares of the sides equals the sum of the squares of the diagonals. (This is the parallelogram law)\n6.It possesses rotational symmetry.\n7.One pair of opposite sides are parallel and congruent.\n8.Two pairs of adjacent angles are supplementary.", + "xrefs" : [ "wikipedia:Parallelogram" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-01-27T11:39:36Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-12T12:33:07Z" } ] }, "type" : "CLASS", - "lbl" : "side scatter" + "lbl" : "parallelogram" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002030", + "id" : "http://purl.obolibrary.org/obo/PATO_0002318", "meta" : { "definition" : { - "val" : "A molecular quality that inheres in a molecular entity by virtue of whether the bearer exhibits the ability of a probe to react precisely with a specific target molecule.", - "xrefs" : [ "PATOC:mc" ] + "val" : "A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt", + "xrefs" : [ "wiktionary:superellipse" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "Lamé curve", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-01-27T11:13:52Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - } ] - }, - "type" : "CLASS", - "lbl" : "specificity to" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0001900", - "meta" : { - "definition" : { - "val" : "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.", - "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://xmlns.com/foaf/0.1/page", - "val" : "https://github.com/oborel/obo-relations/wiki/ROAndTime" - } ] - }, - "type" : "PROPERTY", - "lbl" : "temporal interpretation" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001183", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "George Gkoutos" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-12T12:45:16Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute response value" + "lbl" : "superelliptic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002031", + "id" : "http://purl.obolibrary.org/obo/PATO_0002311", "meta" : { "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved or tilted such that the tip points upwards.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "Having a fringe or border of hairlike or fingerlike projections.", + "xrefs" : [ "PATO:WS" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -22571,291 +23102,354 @@ "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-01-27T11:23:45Z" + "val" : "2011-09-22T03:52:11Z" } ] }, "type" : "CLASS", - "lbl" : "upturned" + "lbl" : "fimbriated" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0001901", + "id" : "http://purl.obolibrary.org/obo/PATO_0002312", "meta" : { "definition" : { - "val" : "\n\n## Elucidation\n\nThis is used when the statement/axiom is assumed to hold true 'eternally'\n\n## How to interpret (informal)\n\nFirst the \"atemporal\" FOL is derived from the OWL using the standard\ninterpretation. This axiom is temporalized by embedding the axiom\nwithin a for-all-times quantified sentence. The t argument is added to\nall instantiation predicates and predicates that use this relation.\n\n## Example\n\n Class: nucleus\n SubClassOf: part_of some cell\n\n forall t :\n forall n :\n instance_of(n,Nucleus,t)\n implies\n exists c :\n instance_of(c,Cell,t)\n part_of(n,c,t)\n\n## Notes\n\nThis interpretation is *not* the same as an at-all-times relation\n\n", - "xrefs" : [ ] - } - }, - "type" : "INDIVIDUAL", - "lbl" : "axiom holds for all times" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001184", - "meta" : { + "val" : "Consisting of segments or similar parts arranged in a longitudinal series.", + "xrefs" : [ "OED:" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-03T03:42:23Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete maturity value" + "lbl" : "segmented" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001189", + "id" : "http://purl.obolibrary.org/obo/PATO_0002310", "meta" : { "definition" : { - "val" : "A maturity quality inhering in a bearer by virtue of the bearer's being between the onset of puberty and maturity.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's being strong, thick or sturdy.", + "xrefs" : [ "PATOC:BF" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-09-20T06:23:31Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "adolescent" + "lbl" : "robust" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002036", + "id" : "http://purl.obolibrary.org/obo/PATO_0002326", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located towards the central axis of the organism or an extremity.", + "val" : "An orientation inhering in a bearer by virtue of the bearer's placement at an angle.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-02-01T02:06:20Z" + "val" : "2011-11-23T12:06:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "axial to" + "lbl" : "angle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002037", + "id" : "http://purl.obolibrary.org/obo/PATO_0002327", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer exhibiting deterioration of its structure.", + "val" : "An angle which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-11-23T12:06:38Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-02-03T11:13:19Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002328" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "degeneration" + "lbl" : "increased angle to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002034", + "id" : "http://purl.obolibrary.org/obo/PATO_0002324", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being unseparated into parts or divisions.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The temporal relation between the end of the process with respect to a reference process.", + "xrefs" : [ "PATOC:LC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "unseparated", - "xrefs" : [ ] + "val" : "extent", + "xrefs" : [ "GOC:CJM" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "completeness", + "xrefs" : [ "GOC:CJM" ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-01-27T11:53:46Z" + "val" : "2011-11-23T11:46:00Z" } ] }, "type" : "CLASS", - "lbl" : "undivided" + "lbl" : "offset quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001187", + "id" : "http://purl.obolibrary.org/obo/PATO_0002325", "meta" : { "definition" : { - "val" : "A maturity quality inhering in a insect by virtue of the bearer's being in the chrysalis (cocoon) or post larval stage.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "The temporal relation between the start of the process with respect to a reference process.", + "xrefs" : [ "PATOC:LC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "initiation", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-11-23T11:47:34Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "pupal" + "lbl" : "onset quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002035", + "id" : "http://purl.obolibrary.org/obo/PATO_0002328", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being on the same side in relation to another structure.", + "val" : "An angle which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "ipsilateral", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-02-01T02:04:11Z" + "val" : "2011-11-23T12:06:54Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "ipsilateral to" + "lbl" : "decreased angle to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001188", + "id" : "http://purl.obolibrary.org/obo/PATO_0002329", "meta" : { "definition" : { - "val" : "A maturity quality inhering in a bearer by virtue of the bearer's being in an inactive stage in the development of some insects, between the larval and the pupal stages.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's exhibiting a upward bending of its leaves or other plant parts.", + "xrefs" : [ "PATOC:DS" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-01-31T11:40:23Z" } ] }, "type" : "CLASS", - "lbl" : "prepupal" + "lbl" : "hyponastic" }, { - "id" : "http://purl.obolibrary.org/obo/pato#is_unit_of", + "id" : "http://purl.obolibrary.org/obo/PATO_0002322", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002321" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "pato.ontology" + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-12T12:51:19Z" } ] }, - "type" : "PROPERTY", - "lbl" : "is_unit_of" + "type" : "CLASS", + "lbl" : "hyperelliptic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001181", + "id" : "http://purl.obolibrary.org/obo/PATO_0002323", "meta" : { + "definition" : { + "val" : "A temporal distribution pattern of process occurrences within a regulation/reference process.", + "xrefs" : [ "PATOC:LC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-11-22T01:12:28Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute response" + "lbl" : "temporal distribution quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001182", + "id" : "http://purl.obolibrary.org/obo/PATO_0002320", "meta" : { + "definition" : { + "val" : "A superelptic shape inhering in a bearer by virtue of the bearer's shape resembling a diamond.", + "xrefs" : [ "PATO:WC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-12T12:49:06Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001192" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-01-31T02:32:14Z" } ] }, "type" : "CLASS", - "lbl" : "hyporesponsive to" + "lbl" : "tholiform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001195", + "id" : "http://purl.obolibrary.org/obo/PATO_0001004", "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located more centrally than another entity.", - "xrefs" : [ "PATOC:nw" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - 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"lbl" : "hyperresponsive to" + "lbl" : "obsolete alternation value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002040", + "id" : "http://purl.obolibrary.org/obo/PATO_0002334", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface.", - "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/biconvexity" ] + "val" : "A adhesivity which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "xrefs" : [ { - "val" : "Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx" - } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-01-31T12:42:22Z" + }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002039" + "val" : "http://purl.obolibrary.org/obo/PATO_0002333" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - 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"val" : "A maturity quality inhering in a bearer by virtue the bearer's being not fully grown or developed.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "resinous", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-01-31T12:28:16Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002332" } ] }, "type" : "CLASS", - 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"xrefs" : [ "PATOC:msp" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "laterally flattened", - "xrefs" : [ ] - }, { "pred" : "hasRelatedSynonym", - "val" : "transversely flattened", + "val" : "non-resinous", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002331" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-03-26T03:03:37Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "2012-01-31T12:28:57Z" } ] }, "type" : "CLASS", - "lbl" : "laterally compressed" + "lbl" : "non-adhesive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002055", + "id" : "http://purl.obolibrary.org/obo/PATO_0001001", "meta" : { - "definition" : { - "val" : "A fragility which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute alternation" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000565", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - 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"lbl" : "increased occurrence" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002469", - "meta" : { - "definition" : { - "val" : "Structural quality inhereing in a bearer in which a joint has apposed bony surfaces united by fibrous tissue, permitting no movement; found only between bones.", - "xrefs" : [ "PATOC:WD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T11:55:50Z" - } ] - }, - "type" : "CLASS", - "lbl" : "sutured to" + "lbl" : "decreased height" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001138", + "id" : "http://purl.obolibrary.org/obo/PATO_0000568", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -23477,69 +23957,98 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete ig m concentration" + "lbl" : "obsolete relative height value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000289", + "id" : "http://purl.obolibrary.org/obo/PATO_0001899", "meta" : { + "definition" : { + "val" : "A circumference which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001898" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete respiratory rate" + "lbl" : "decreased circumference" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001139", + "id" : "http://purl.obolibrary.org/obo/RO_0002131", "meta" : { + "definition" : { + "val" : "A overlaps B if they share some part in common.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "xrefs" : [ { + "val" : "RO:0002131" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "BFO_0000051 some (BFO_0000050 some ?Y)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "overlaps" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" } ] }, - "type" : "CLASS", - "lbl" : "obsolete urine glucose composition" + "type" : "PROPERTY", + "lbl" : "overlaps" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001136", + "id" : "http://purl.obolibrary.org/obo/PATO_0001890", "meta" : { + "definition" : { + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being divided into three branches.", + "xrefs" : [ "InfoVisual:InfoVisual" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "trifurcate", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete ig e concentration" + "lbl" : "tripartite" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002467", + "id" : "http://purl.obolibrary.org/obo/PATO_0001893", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer resembling a thin narrow strip.", - "xrefs" : [ "PATOC:WD" ] + "val" : "An odor quality of having increased odor.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T11:47:11Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001892" } ] }, "type" : "CLASS", - "lbl" : "lathlike" + "lbl" : "increased odor" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001137", + "id" : "http://purl.obolibrary.org/obo/PATO_0000561", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -23550,64 +24059,69 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete ig g concentration" + "lbl" : "obsolete length value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002468", + "id" : "http://purl.obolibrary.org/obo/PATO_0001894", "meta" : { "definition" : { - "val" : "A structure quality inhering in a bearer by virtue of the bearer's being capable of swelling or stretching.", - "xrefs" : [ "PATOC:WD" ] + "val" : "An organismal quality inhering in a bearer by virtue of the bearer's physical expression of sexual characteristics.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T11:48:26Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "distensible" + "lbl" : "phenotypic sex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002461", + "id" : "http://purl.obolibrary.org/obo/PATO_0000560", "meta" : { - "definition" : { - "val" : "To bend or hang downwards due to loss of water", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-04-09T06:06:14Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "wilty" + "lbl" : "obsolete height value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001130", + "id" : "http://purl.obolibrary.org/obo/PATO_0001891", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "definition" : { + "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; egg-shaped.", + "xrefs" : [ "PATOC:mc" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "eccentric", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "oval", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "egg-shaped", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "ovoid", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete ratio value" + "lbl" : "ovate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000282", + "id" : "http://purl.obolibrary.org/obo/PATO_0000563", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -23618,43 +24132,40 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete f1 fertility" + "lbl" : "obsolete relative size value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002462", + "id" : "http://purl.obolibrary.org/obo/PATO_0001892", "meta" : { "definition" : { - "val" : "A composition quality inhering in an bearer by virtue of the bearer's consisting of collagen.", - "xrefs" : [ "PATOC:WD" ] + "val" : "An odor quality of having decreased odor.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T11:34:15Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001893" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "collagenous" + "lbl" : "decreased odor" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000281", + "id" : "http://purl.obolibrary.org/obo/PATO_0000562", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete cytoplasmic sterility" + "lbl" : "obsolete mass value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001131", + "id" : "http://purl.obolibrary.org/obo/PATO_0000576", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -23665,9 +24176,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute ratio value" + "lbl" : "obsolete relative mass value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000284", + "id" : "http://purl.obolibrary.org/obo/PATO_0000575", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -23678,129 +24189,116 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete germ line dependent fertility" + "lbl" : "obsolete absolute mass value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000283", + "id" : "http://purl.obolibrary.org/obo/PATO_0000578", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001563" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "obsolete f2 fertility" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002460", + "id" : "http://purl.obolibrary.org/obo/PATO_0000577", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer being smaller and contracted, expecially due to loss of moisture.", - "xrefs" : [ "PATOC:JL" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-04-09T06:05:18Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "shriveled" + "lbl" : "obsolete weight value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001134", + "id" : "http://purl.obolibrary.org/obo/go#goslim_agr", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "AGR slim" } ] }, - "type" : "CLASS", - "lbl" : "obsolete ig a concentration" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000286", + "id" : "http://purl.obolibrary.org/obo/PATO_0000579", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001562" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "obsolete cytoplasmic male sterility" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002465", + "id" : "http://purl.obolibrary.org/obo/PATO_0000570", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's resembling a prism.", - "xrefs" : [ ] + "val" : "A height which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "tent shaped", + "val" : "tall", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000569" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T11:44:03Z" } ] }, "type" : "CLASS", - "lbl" : "prism shaped" + "lbl" : "increased height" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002466", + "id" : "http://purl.obolibrary.org/obo/PO_0009011", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer resembling a keyhole.", - "xrefs" : [ "PATOC:WD" ] + "val" : "An anatomical structure that is or was part of a plant, or was derived from a part of a plant.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "estructura vegetal (Spanish, exact)", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T11:45:53Z" + "pred" : "hasExactSynonym", + "val" : "植物 構造 (Japanese, exact)", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "keyhole shaped" + "lbl" : "plant structure" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001135", + "id" : "http://purl.obolibrary.org/obo/PATO_0000572", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete ig d concentration" + "lbl" : "obsolete relative length value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000285", + "id" : "http://purl.obolibrary.org/obo/PATO_0000571", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -23811,103 +24309,173 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete soma dependent fertility" + "lbl" : "obsolete absolute length value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002463", + "id" : "http://purl.obolibrary.org/obo/PATO_0000574", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of some aspect of the bearer extending to the position of another entity.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A length quality which is relatively small.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "short", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "shortened", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "stubby", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T11:41:00Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000573" } ] }, "type" : "CLASS", - "lbl" : "extends to" + "lbl" : "decreased length" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000288", + "id" : "http://purl.obolibrary.org/obo/pato#is_magnitude_of", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "pato.ontology" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative litter size" + "type" : "PROPERTY", + "lbl" : "is_magnitude_of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001132", + "id" : "http://purl.obolibrary.org/obo/PATO_0000573", "meta" : { + "definition" : { + "val" : "A length quality which is relatively large.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "long", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000574" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative ratio value" + "lbl" : "increased length" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001133", + "id" : "http://purl.obolibrary.org/obo/IAO_0000600", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "elucidation" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Person:Barry Smith" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "person:Alan Ruttenberg" } ] }, - "type" : "CLASS", - "lbl" : "obsolete immunoglobulin concentration" + "type" : "PROPERTY", + "lbl" : "elucidation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002464", + "id" : "http://purl.obolibrary.org/obo/PATO_0000587", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of some aspect of the bearer extending past the position of another entity.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A size quality which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "reduced", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "hypoplasia", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "underdeveloped", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "tiny", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "small", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T11:42:15Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000586" } ] }, "type" : "CLASS", - "lbl" : "extends beyond" + "lbl" : "decreased size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000287", + "id" : "http://purl.obolibrary.org/obo/PATO_0000586", "meta" : { + "definition" : { + "val" : "A size quality which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "great", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "enlarged", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "expanded", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "large", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "big", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001202" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000587" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute litter size" + "lbl" : "increased size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000280", + "id" : "http://purl.obolibrary.org/obo/PATO_0000589", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -23918,43 +24486,40 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete backcross fertility" + "lbl" : "obsolete absolute thickness value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001149", + "id" : "http://purl.obolibrary.org/obo/PATO_0000588", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's being a remnant structure from earlier development or evolution.", + "xrefs" : [ "PATOC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "May be part of an animal (such as an organ or bone) that is no longer used by the species and has therefore become smaller or less developed." } ] }, "type" : "CLASS", - "lbl" : "obsolete susceptibility value" + "lbl" : "vestigial" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002478", + "id" : "http://purl.obolibrary.org/obo/PATO_0000581", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented transversely relative to the long axis of the bearer.", - "xrefs" : [ "PATOC:DS" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:29:15Z" } ] }, "type" : "CLASS", - "lbl" : "transversely striated" + "lbl" : "obsolete relative weight value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001147", + "id" : "http://purl.obolibrary.org/obo/PATO_0000580", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -23965,114 +24530,132 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute resistance value" + "lbl" : "obsolete absolute weight value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002479", + "id" : "http://purl.obolibrary.org/obo/PATO_0000583", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented obliquely relative to the long axis of the bearer.", - "xrefs" : [ "PATOC:DS" ] + "val" : "A weight which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:29:42Z" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low weight", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "light weight", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000582" } ] }, "type" : "CLASS", - "lbl" : "obliquely striated" + "lbl" : "decreased weight" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001148", + "id" : "http://purl.obolibrary.org/obo/PATO_0000582", "meta" : { + "definition" : { + "val" : "A weight which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "heavy", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "high weight", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000583" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative resistance value" + "lbl" : "increased weight" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000293", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete absolute activity value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002472", + "id" : "http://purl.obolibrary.org/obo/PATO_0000585", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position.", - "xrefs" : [ "PATOC:NV" ] + "val" : "A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ).", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "shrunken", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:05:06Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000412" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002471" + "val" : "http://purl.obolibrary.org/obo/PATO_0000584" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "decreased velocity" + "lbl" : "hypotrophic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001141", + "id" : "http://purl.obolibrary.org/obo/PATO_0000584", "meta" : { + "definition" : { + "val" : "An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ).", + "xrefs" : [ "PATOC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "hypertrophy", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000585" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete ig a concentration value" + "lbl" : "hypertrophic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002473", + "id" : "http://purl.obolibrary.org/obo/CHEBI_24431", "meta" : { "definition" : { - "val" : "A disposition inhering in a tumour by virtue of the bearer's disposition to spontaneously arise.", - "xrefs" : [ "PATOC:NV" ] + "val" : "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/chebi#3_STAR" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "chemical entity", + "xrefs" : [ "UniProt" ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:07:08Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "chebi_ontology" } ] }, "type" : "CLASS", - "lbl" : "neoplastic, spontaneous" + "lbl" : "chemical entity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001142", + "id" : "http://purl.obolibrary.org/obo/PATO_0000598", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -24083,93 +24666,124 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete ig d concentration value" + "lbl" : "obsolete relative width value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000292", + "id" : "http://purl.obolibrary.org/obo/PATO_0000597", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete mobility value" + "lbl" : "obsolete absolute width value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000295", + "id" : "http://purl.obolibrary.org/obo/PATO_0000599", "meta" : { + "definition" : { + "val" : "A width which is relatively small.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "narrow", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000600" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative activity value" + "lbl" : "decreased width" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002470", + "id" : "http://purl.obolibrary.org/obo/PATO_0000590", "meta" : { - "definition" : { - "val" : "A morphological quality between two bearers inhering that one bearer is subject to change the nature, function, or condition of itself to become the other.", - "xrefs" : [ "PATOC:LC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:01:57Z" } ] }, "type" : "CLASS", - "lbl" : "transformed to" + "lbl" : "obsolete relative thickness value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000294", + "id" : "http://purl.obolibrary.org/obo/PATO_0000592", "meta" : { + "definition" : { + "val" : "A thickness which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "thin", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "low thickness", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "slender", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000591" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete process value" + "lbl" : "decreased thickness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002471", + "id" : "http://purl.obolibrary.org/obo/PATO_0000591", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position.", - "xrefs" : [ "PATOC:NV" ] + "val" : "A thickness which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002472" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "thick", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:03:45Z" + "pred" : "hasExactSynonym", + "val" : "stout", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "high thickness", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "thickened", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000592" } ] }, "type" : "CLASS", - "lbl" : "increased velocity" + "lbl" : "increased thickness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001140", + "id" : "http://purl.obolibrary.org/obo/PATO_0000594", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -24180,9 +24794,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete immunoglobulin concentration value" + "lbl" : "obsolete relative volume value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001145", + "id" : "http://purl.obolibrary.org/obo/PATO_0000593", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -24193,94 +24807,119 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete ig m concentration value" + "lbl" : "obsolete absolute volume value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002476", + "id" : "http://purl.obolibrary.org/obo/PATO_0000596", "meta" : { "definition" : { - "val" : "A position quality inhering in a bearer by virtue of the bearer's forming the end of another entity.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A volume which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "small volume", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "low volume", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000595" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:18:08Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "terminal" + "lbl" : "decreased volume" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000297", + "id" : "http://purl.obolibrary.org/obo/PATO_0000595", "meta" : { "definition" : { - "val" : "A quality of a process which ends earlier than the natural end time or reference process.", - "xrefs" : [ "PATOC:LC" ] + "val" : "A volume which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "abolished", + "val" : "high volume", "xrefs" : [ ] }, { "pred" : "hasRelatedSynonym", - "val" : "incomplete", + "val" : "large volume", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "TODO: the definition is incorrect. See absent." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001508" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000596" } ] }, "type" : "CLASS", - "lbl" : "arrested" + "lbl" : "increased volume" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002477", + "id" : "http://purl.obolibrary.org/obo/CHEBI_59999", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's disposition to breaks without significant deformation (strain) when subjected to stress.", - "xrefs" : [ "wikipedia:http://en.wikipedia.org/wiki/Brittleness" ] + "val" : "A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/chebi#3_STAR" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "Chemische Substanz", + "xrefs" : [ "ChEBI" ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:25:03Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "chebi_ontology" } ] }, "type" : "CLASS", - "lbl" : "brittle" + "lbl" : "chemical substance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001146", + "id" : "http://purl.obolibrary.org/obo/GO_0038023", "meta" : { + "definition" : { + "val" : "Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.", + "xrefs" : [ "GOC:bf", "GOC:signaling" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "receptor activity involved in signal transduction", + "xrefs" : [ "GOC:bf" ] + }, { + "pred" : "hasBroadSynonym", + "val" : "receptor activity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0004872" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "rfoulger" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-08-01T02:45:27Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0019041" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "molecular_function" } ] }, "type" : "CLASS", - "lbl" : "obsolete resistance value" + "lbl" : "signaling receptor activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000296", + "id" : "http://purl.obolibrary.org/obo/PATO_0000529", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -24291,48 +24930,45 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete speed value" + "lbl" : "obsolete drug sensitive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002474", + "id" : "http://purl.obolibrary.org/obo/PATO_0000528", "meta" : { - "definition" : { - "val" : "A flavor quality inhering in a bearer by virtue of the bearer's having an acrid, sharp, or disagreeable flavor.", - "xrefs" : [ "PATOC:LC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:09:15Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "bitter" + "lbl" : "obsolete drug insensitive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000299", + "id" : "http://purl.obolibrary.org/obo/PATO_0001859", "meta" : { "definition" : { - "val" : "A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely.", + "val" : "A coordination which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high coordination", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000300" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001860" } ] }, "type" : "CLASS", - "lbl" : "mobile" + "lbl" : "increased coordination" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001143", + "id" : "http://purl.obolibrary.org/obo/PATO_0000521", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -24343,43 +24979,24 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete ig e concentration value" + "lbl" : "obsolete drug sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002475", + "id" : "http://purl.obolibrary.org/obo/PATO_0001853", "meta" : { "definition" : { - "val" : "A position quality inhering in a bearer by virtue of the bearer's existing near the end of another entity.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of cerebral spinal fluid.", + "xrefs" : [ "PATOC:mh" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:17:41Z" - } ] - }, - "type" : "CLASS", - "lbl" : "subterminal" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001144", - "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete ig g concentration value" + "lbl" : "hydrocephalic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000298", + "id" : "http://purl.obolibrary.org/obo/PATO_0000520", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -24390,22 +25007,24 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete not arrested value" + "lbl" : "obsolete radiation sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000291", + "id" : "http://purl.obolibrary.org/obo/PATO_0001854", "meta" : { + "definition" : { + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being situated at right angles to the horizon.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative respiratory rate" + "lbl" : "vertical" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000290", + "id" : "http://purl.obolibrary.org/obo/PATO_0000523", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -24416,90 +25035,101 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute respiratory rate" + "lbl" : "obsolete insecticide sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002007", + "id" : "http://purl.obolibrary.org/obo/PATO_0001851", "meta" : { "definition" : { - "val" : "A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A structure quality inhering in a bearer by virtue of the bearer's exhibiting transient abnormal enlargement, not due to cell proliferation.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "xrefs" : [ { - "val" : "Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "swelling", + "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Use this term or an is_a child of this term when the entire shape of the object is known." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002008" } ] }, "type" : "CLASS", - "lbl" : "convex 3-D shape" + "lbl" : "swollen" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002008", + "id" : "http://purl.obolibrary.org/obo/PATO_0001852", "meta" : { "definition" : { - "val" : "A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "xrefs" : [ { - "val" : "Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "luxation", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "dislocation", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "luxated", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "relational dislocated quality", + "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0002159" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0002158" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002007" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001479" } ] }, "type" : "CLASS", - "lbl" : "concave 3-D shape" + "lbl" : "dislocated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002005", + "id" : "http://purl.obolibrary.org/obo/PATO_0000522", "meta" : { - "definition" : { - "val" : "Surface shape that refers to the inward or outward curvature of the surface.", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "concavity" + "lbl" : "obsolete herbicide sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002489", + "id" : "http://purl.obolibrary.org/obo/PATO_0001857", "meta" : { "definition" : { - "val" : "Overlap with quality inhering in a bearer by virtue of the bearer's being positioned under another entity so as to be covered by some portion of it.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A shape quality in a bearer by virtue of the bearer's curving inward.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T04:13:04Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001355" } ] }, "type" : "CLASS", - "lbl" : "overlapped by" + "lbl" : "concave" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001158", + "id" : "http://purl.obolibrary.org/obo/PATO_0000525", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -24510,302 +25140,248 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative concentration value" + "lbl" : "obsolete soil composition sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001159", + "id" : "http://purl.obolibrary.org/obo/PATO_0001858", "meta" : { "definition" : { - "val" : "A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration.", + "val" : "A functionality quality inhering in a bearer by virtue of being not completely paralysed.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "concentrated" + "lbl" : "partially paralysed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002006", + "id" : "http://purl.obolibrary.org/obo/PATO_0000524", "meta" : { - "definition" : { - "val" : "A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity.", - "xrefs" : [ "PATOC:CJM" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "2-D projection", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "cross-sectional", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "2-D shape" + "lbl" : "obsolete plant growth hormone sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002009", + "id" : "http://purl.obolibrary.org/obo/PATO_0000527", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity.", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "branchiness" + "lbl" : "obsolete relative drug sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002483", + "id" : "http://purl.obolibrary.org/obo/PATO_0001855", "meta" : { "definition" : { - "val" : "Positional quality in which an entity is located outside of another entity.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being in the plane of the horizon.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-30T06:06:27Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "external to" + "lbl" : "horizontal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001152", + "id" : "http://purl.obolibrary.org/obo/PATO_0001856", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An oriented quality inhering in a bearer by virtue of the bearer's being turned inward upon itself.", + "xrefs" : [ "die.net:die.net" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "susceptible", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001153" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "For example, a tubular organ or part." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "susceptible toward" + "lbl" : "introverted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002000", + "id" : "http://purl.obolibrary.org/obo/PATO_0000526", "meta" : { - "definition" : { - "val" : "A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity.", - "xrefs" : [ "PATOC:CJM" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "xrefs" : [ { - "val" : "OBO_REL:lacks_part" - } ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "lacks all physical parts of type", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Example: [E=organism Q=lacks_all_parts_of_type E2=Wing] - applies to an organism. A relational quality in which the bearer entity has no parts of the specified type. The bearer of this quality has_part = 0 of the indicated entity type, where a comparable organism usually has at least 1 part of the same type. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e lacks all parts of type X at time t, then there exists no instances x of X at t such that x part_of e that has no wings, where wings are normally present in that organism type. In OWL this is equivalent to a restriction on the OBO_REL:has_part relation with cardinality=0, i.e has_part 0 E2." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001557" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "lacks all parts of type" + "lbl" : "obsolete absolute drug sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002484", + "id" : "http://purl.obolibrary.org/obo/PATO_0001850", "meta" : { "definition" : { - "val" : "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of an inverted letter V.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being fibrous tissue that replaces normal tissue destroyed by injury or disease.", + "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasBroadSynonym", - "val" : "chevron shaped", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T03:55:44Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "inverted-V shaped" + "lbl" : "scarred" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001153", + "id" : "http://purl.obolibrary.org/obo/chebi#3_STAR", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus.", - "xrefs" : [ "PATO:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "insusceptible", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001152" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Manually annotated by ChEBI Team" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000539", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "insusceptible toward" + "lbl" : "obsolete drought sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001150", + "id" : "http://purl.obolibrary.org/obo/PATO_0000532", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute susceptibility value" + "lbl" : "obsolete micronutrient sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002481", + "id" : "http://purl.obolibrary.org/obo/PATO_0001864", "meta" : { - "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a slanting direction or position : neither perpendicular nor parallel.", - "xrefs" : [ "merriam-wester:http://www.merriam-webster.com/dictionary/oblique" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-30T05:49:50Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001865" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "oblique orientation" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002482", + "id" : "http://purl.obolibrary.org/obo/PATO_0001865", "meta" : { "definition" : { - "val" : "Shape quality inhering in a bearer by virtue of the bearer exhibiting a narrow and elongate opening.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. Includes spheres and oblate/prolate spheroids.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Spheroid" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "sphericality", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-30T05:51:39Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001864" } ] }, "type" : "CLASS", - "lbl" : "slit-like" + "lbl" : "spheroid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001151", + "id" : "http://purl.obolibrary.org/obo/PATO_0000531", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative susceptibility value" + "lbl" : "obsolete macronutrient sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002487", + "id" : "http://purl.obolibrary.org/obo/PATO_0000534", "meta" : { - "definition" : { - "val" : "A quality inhering in a process by virtue of that process having exactly one organism as a participant.", - "xrefs" : [ "PATOC:DS" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T04:09:51Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "single organismal process quality" + "lbl" : "obsolete p h sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001156", + "id" : "http://purl.obolibrary.org/obo/PATO_0001862", "meta" : { + "definition" : { + "val" : "A fertility quality inhering in a bearer by virtue of the bearer's disposition to make its offspring sterile.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "grandchildless", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative concentration" + "lbl" : "lack of fertility in offspring" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002003", + "id" : "http://purl.obolibrary.org/obo/PATO_0001863", "meta" : { "definition" : { - "val" : "A quality that inheres in an entire population or part of a population.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration.", + "xrefs" : [ "PATOC:cjm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000389" } ] }, "type" : "CLASS", - "lbl" : "population quality" + "lbl" : "chronic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001157", + "id" : "http://purl.obolibrary.org/obo/PATO_0000533", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -24816,193 +25392,119 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute concentration value" + "lbl" : "obsolete osmotic response sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002004", + "id" : "http://purl.obolibrary.org/obo/PATO_0000536", "meta" : { - "definition" : { - "val" : "A shape that inheres in a part of a surface. An object can have different surface shapes on different parts of its surface.", - "xrefs" : [ "PATOC:CJM" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Consider PATO:0001925" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete surface shape" + "lbl" : "obsolete water sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002488", + "id" : "http://purl.obolibrary.org/obo/PATO_0001868", "meta" : { "definition" : { - "val" : "Overlap with quality inhering in a bearer by virtue of the bearer's being positioned over another entity so as to cover some portion of it.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A fluorescence quality inhering in a bearer by virtue of the bearer's exhibiting fluorescence which is self-induced.", + "xrefs" : [ "PATOC:mb" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T04:12:22Z" } ] }, "type" : "CLASS", - "lbl" : "overlapping" + "lbl" : "autofluorescence" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002001", + "id" : "http://purl.obolibrary.org/obo/PATO_0001869", "meta" : { "definition" : { - "val" : "The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. 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"val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:15:24Z" } ] }, "type" : "CLASS", - "lbl" : "dorsal orientation" + "lbl" : "U-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001164", + "id" : "http://purl.obolibrary.org/obo/PATO_0000547", "meta" : { "definition" : { - "val" : "A physical quality which inheres in a bearer by virtue of the bearer's exhibiting density.", + "val" : "A photosensitivity quality inhering in a bearer by virtue of the bearer's exhibiting photosensitivity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000546" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dense" + "lbl" : "photosensitive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002011", + "id" : "http://purl.obolibrary.org/obo/PATO_0000546", "meta" : { "definition" : { - "val" : "A structural quality which is held by a bearer when the latter's disposition the presence of abnormally proliferating masses of cells.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "tumorous", + "pred" : "hasRelatedSynonym", + "val" : "photoresistant", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000547" } ] }, "type" : "CLASS", - "lbl" : "neoplastic" + "lbl" : "photoinsensitive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002492", + "id" : "http://purl.obolibrary.org/obo/PATO_0001877", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterolaterally.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle; attached at the broad end.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "anterolaterally directed", + "val" : "spear-shaped", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:13:17Z" } ] }, "type" : "CLASS", - "lbl" : "anterolateral orientation" + "lbl" : "lanceolate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001161", + "id" : "http://purl.obolibrary.org/obo/PATO_0000549", "meta" : { - "definition" : { - "val" : "A concentration which relatively low.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "diluted" + "lbl" : "obsolete far red light sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001162", + "id" : "http://purl.obolibrary.org/obo/PATO_0001878", "meta" : { "definition" : { - "val" : "A concentration which is higher relative to the normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high concentration", + "val" : "S-shaped", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "sigmoidal", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001163" } ] }, "type" : "CLASS", - "lbl" : "increased concentration" + "lbl" : "sigmoid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002493", + "id" : "http://purl.obolibrary.org/obo/PATO_0000548", "meta" : { - "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteroventrally.", - "xrefs" : [ "PATOC:WD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "anteroventrally directed", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:13:55Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "anteroventral orientation" + "lbl" : "obsolete blue light sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001167", + "id" : "http://purl.obolibrary.org/obo/PATO_0001871", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having the shape of a kidney.", + "xrefs" : [ "ISBN:0881923214" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001168" + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "kidney-shaped", + "xrefs" : [ ] }, { + "pred" : "hasRelatedSynonym", + "val" : "bean shaped", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "damaged" + "lbl" : "reniform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002498", + "id" : "http://purl.obolibrary.org/obo/PATO_0001872", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed medially.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resemblance to a cube (a 3-D shape with a square cross section).", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "block-like", + "xrefs" : [ ] + }, { "pred" : "hasExactSynonym", - "val" : "medially directed", + "val" : "cuboidal", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:17:30Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "medial orientation" + "lbl" : "cuboid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002014", + "id" : "http://purl.obolibrary.org/obo/PATO_0000541", "meta" : { - "definition" : { - "val" : "A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "structure, cavities" + "lbl" : "obsolete photosensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002015", + "id" : "http://purl.obolibrary.org/obo/PATO_0000540", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete flooding sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002499", + "id" : "http://purl.obolibrary.org/obo/PATO_0001870", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteriorly.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A shape quality inhering in a circular disk by virtue of the bearer's having a segment of another circle removed from its edge, so that what remains is a shape enclosed by two circular arcs of different diameters which intersect at two points (usually in such a manner that the enclosed shape does not include the center of the original circle).", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Crescent" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "xrefs" : [ { + "val" : "Image:http://upload.wikimedia.org/wikipedia/commons/7/74/Crescent.svg" + } ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "posteriorly directed", + "val" : "crescentic", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "bow-shaped", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "lunate", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:18:21Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "posterior orientation" + "lbl" : "crescent-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001168", + "id" : "http://purl.obolibrary.org/obo/pato#singly_occurring_form_of", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "monadic_form_of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001167" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them." } ] }, - "type" : "CLASS", - "lbl" : "undamaged" + "type" : "PROPERTY", + "lbl" : "singly_occurring_form_of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002012", + "id" : "http://purl.obolibrary.org/obo/PATO_0000554", "meta" : { - "definition" : { - "val" : "A texture quality that exists through a liquid cover on the surface of the bearer.", - "xrefs" : [ "Wikipedia:Wikipedia" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "coating" + "lbl" : "obsolete cold sensitive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001165", + "id" : "http://purl.obolibrary.org/obo/PATO_0001886", "meta" : { + "definition" : { + "val" : "A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water.", + "xrefs" : [ "answers.com:answers.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001884" } ] }, "type" : "CLASS", - "lbl" : "obsolete urine enzyme composition value" + "lbl" : "hydrophilicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002496", + "id" : "http://purl.obolibrary.org/obo/PATO_0001887", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsolaterally.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "dorsolaterally directed", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001885" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:16:04Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "dorsolateral orientation" + "lbl" : "hydrophilic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002013", + "id" : "http://purl.obolibrary.org/obo/PATO_0000553", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of whether the bearer forms a bundle of anatomical fibers, as of muscle or nerve.", - "xrefs" : [ "answers.com:http://www.answers.com/" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "fasciculation" + "lbl" : "obsolete relative temperature sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002497", + "id" : "http://purl.obolibrary.org/obo/PATO_0001884", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed laterally.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "laterally directed", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:16:45Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001886" } ] }, "type" : "CLASS", - "lbl" : "lateral orientation" + "lbl" : "hydrophobicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001166", + "id" : "http://purl.obolibrary.org/obo/PATO_0000556", "meta" : { + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "thermoresistant", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" @@ -25601,68 +26084,38 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete urine enzyme composition" + "lbl" : "obsolete thermoinsensitive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002490", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_207598", "meta" : { - "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteriorly.", - "xrefs" : [ "PATOC:WD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "anteriorly directly", + "pred" : "hasRelatedSynonym", + "val" : "Homo/Pan/Gorilla group", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:11:26Z" } ] }, "type" : "CLASS", - "lbl" : "anterior orientation" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#SubsetProperty", - "type" : "PROPERTY", - "lbl" : "subset_property" + "lbl" : "Homininae" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002491", + "id" : "http://purl.obolibrary.org/obo/PATO_0001885", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "anterodorsally directed", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002526" + "val" : "http://purl.obolibrary.org/obo/PATO_0001887" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:12:15Z" } ] }, "type" : "CLASS", - "lbl" : "anterodorsal orientation" + "lbl" : "hydrophobic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001160", + "id" : "http://purl.obolibrary.org/obo/PATO_0000555", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -25673,9 +26126,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete unconcentrated" + "lbl" : "obsolete heat sensitive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000246", + "id" : "http://purl.obolibrary.org/obo/PATO_0000558", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -25686,159 +26139,204 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete postural reflex" + "lbl" : "obsolete size value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002425", + "id" : "http://purl.obolibrary.org/obo/PATO_0000557", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete thermosensitive" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001888", "meta" : { "definition" : { - "val" : "Open to view or not covered by another entity.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A quality of a liquid inhering in a bearer by virtue of the bearer's ability to mix with (dissolve in) another liquid.", + "xrefs" : [ "Chemicool:Chemicool" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-20T11:47:16Z" } ] }, "type" : "CLASS", - "lbl" : "exposed" + "lbl" : "miscibility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001578", + "id" : "http://purl.obolibrary.org/obo/PATO_0001889", "meta" : { "definition" : { - "val" : "A permeability which is relatively low.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having the border, edge, or outline cut into a series of segments of circles resembling a scallop-shell.", + "xrefs" : [ "Oxford:EnglishDictionary" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low permeability", + "val" : "crenulate", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "crenate", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001577" } ] }, "type" : "CLASS", - "lbl" : "decreased permeability" + "lbl" : "scalloped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000245", + "id" : "http://purl.obolibrary.org/obo/PATO_0000559", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete pinna reflex" + "lbl" : "obsolete absolute size value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002426", + "id" : "http://purl.obolibrary.org/obo/PATO_0001882", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a boat.", - "xrefs" : [ "wordnetweb:wordnetweb" ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a slug.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:12:03Z" } ] }, "type" : "CLASS", - "lbl" : "scaphoid" + "lbl" : "limaciform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001579", + "id" : "http://purl.obolibrary.org/obo/PATO_0000550", "meta" : { - "definition" : { - "val" : "A physical quality that is the ability to contract or shrink.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "contractility" + "lbl" : "obsolete red light sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002423", + "id" : "http://purl.obolibrary.org/obo/PATO_0001883", "meta" : { "definition" : { - "val" : "A round or lobulated protruding form resembling a nipple.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's gradually becoming thicker towards the end.", + "xrefs" : [ "MP:0000576" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "club-shaped", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "clubbed", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "club-like", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001797" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T03:13:44Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "clavate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000552", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "papillomatous" + "lbl" : "obsolete absolute temperature sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001576", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_117571", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "bony vertebrates", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Euteleostomi" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001880", "meta" : { "definition" : { - "val" : "A pressure which is relatively high.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's having a tail or tail-like projection.", + "xrefs" : [ "PATOC:cjm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "tailed", + "xrefs" : [ ] + }, { "pred" : "hasExactSynonym", - "val" : "high pressure", + "val" : "caudal", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001575" } ] }, "type" : "CLASS", - "lbl" : "increased pressure" + "lbl" : "caudate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000248", + "id" : "http://purl.obolibrary.org/obo/PATO_0001881", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's forming two equal obtuse triangles with a short side in common.", + "xrefs" : [ "ISBN:0881923214", "RKC:RKC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "sagittate", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Gradually enlarged at the base, like the head of an arrow." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete pupillary reflex" + "lbl" : "arrow-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000247", + "id" : "http://purl.obolibrary.org/obo/PATO_0000551", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -25849,39 +26347,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete proboscis extension reflex" + "lbl" : "obsolete u v light sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002424", - "meta" : { - "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's having two or more entities that extend from a common point in different directions.", - "xrefs" : [ "PATOC:AD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-20T11:43:47Z" - } ] - }, + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_117570", "type" : "CLASS", - "lbl" : "divergent from" + "lbl" : "Teleostomi" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001577", + "id" : "http://purl.obolibrary.org/obo/PATO_0001817", "meta" : { "definition" : { - "val" : "A permeability which is relatively high.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A fatigability which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high permeability", + "val" : "low fatigability", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -25889,369 +26370,289 @@ "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001578" + "val" : "http://purl.obolibrary.org/obo/PATO_0001816" } ] }, "type" : "CLASS", - "lbl" : "increased permeability" + "lbl" : "decreased fatigability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002429", + "id" : "http://purl.obolibrary.org/obo/PATO_0001818", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter X.", - "xrefs" : [ "PATOC:WC" ] + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:19:53Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002026" } ] }, "type" : "CLASS", - "lbl" : "x-shaped" + "lbl" : "progressive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000249", + "id" : "http://purl.obolibrary.org/obo/PATO_0001815", "meta" : { + "definition" : { + "val" : "A strength quality inhering in a bearer by virtue of the bearer's disposition to lose strength.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete righting reflex" + "lbl" : "fatigability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002427", + "id" : "http://purl.obolibrary.org/obo/PATO_0001816", "meta" : { "definition" : { - "val" : "A surface feature shape having numerous very small circular rounded projections or protuberances.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A fatigability which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high fatigability", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001817" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:15:53Z" } ] }, "type" : "CLASS", - "lbl" : "knobbled" + "lbl" : "increased fatigability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002428", + "id" : "http://purl.obolibrary.org/obo/PATO_0001819", "meta" : { "definition" : { - "val" : "A 3-D shape with three supports or legs.", - "xrefs" : [ "PATOC:WC" ] + "val" : "A morphological quality inhering in a bearer by virtue of the bearer's absence or closure of a normal body orifice or tubular passage.", + "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "atresia", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:18:44Z" } ] }, "type" : "CLASS", - "lbl" : "tripodal" + "lbl" : "atretic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001570", + "id" : "http://purl.obolibrary.org/obo/PATO_0001810", "meta" : { "definition" : { - "val" : "A quality of a process inhering in a bearer by virtue of the bearer's having fewer processual parts.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by one or more creases in a normally smooth surface.", + "xrefs" : [ "url:http://www.thefreedictionary.com/wrinkled" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "having decreased processual parts" + "lbl" : "wrinkled" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0009892", + "id" : "http://purl.obolibrary.org/obo/PATO_0001813", "meta" : { "definition" : { - "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", - "xrefs" : [ "GOC:go_curators" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's lack elastic tension that facilitate response to stimuli.", + "xrefs" : [ "PATOC:GVG" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "down regulation of metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "down-regulation of metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "inhibition of organismal metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "negative regulation of organismal metabolism", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "negative regulation of metabolism", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "downregulation of metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "inhibition of metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "negative regulation of multicellular organismal metabolic process", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0044252" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "negative regulation of metabolic process" + "lbl" : "atonicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001571", + "id" : "http://purl.obolibrary.org/obo/PATO_0001814", "meta" : { "definition" : { - "val" : "A size quality inhering in a bearer by virtue of the bearer's being made wider or larger in all dimensions.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's impaired elastic tension that facilitate response to stimuli.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dilated" + "lbl" : "dystonicity" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0009893", + "id" : "http://purl.obolibrary.org/obo/PATO_0001811", "meta" : { "definition" : { - "val" : "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", - "xrefs" : [ "GOC:go_curators" ] + "val" : "A relaxation which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "positive regulation of organismal metabolism", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "up regulation of metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "stimulation of organismal metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "stimulation of metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "up-regulation of metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "positive regulation of multicellular organismal metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "activation of metabolic process", - "xrefs" : [ ] - }, { "pred" : "hasExactSynonym", - "val" : "positive regulation of metabolism", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "up-regulation of organismal metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "upregulation of metabolic process", + "val" : "high relaxation", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0044253" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "GO has now relevant relation terms which should be used instead." + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "positive regulation of metabolic process" + "lbl" : "obsolete increased relaxation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000240", + "id" : "http://purl.obolibrary.org/obo/PATO_0001812", "meta" : { + "definition" : { + "val" : "A relaxation which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low relaxation", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "GO has now relevant relation terms which should be used instead." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete contact righting reflex" + "lbl" : "obsolete decreased relaxation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002421", + "id" : "http://purl.obolibrary.org/obo/GO_0010562", "meta" : { "definition" : { - "val" : "Having or resembling the characteristic of a cicatrix - a scar resulting from formation and contraction of fibrous tissue.", - "xrefs" : [ "mw:http://www.merriam-webster.com/dictionary/cicatricial" ] + "val" : "Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T03:08:09Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "cicatricial" + "lbl" : "positive regulation of phosphorus metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001574", + "id" : "http://purl.obolibrary.org/obo/GO_0010563", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's motion characteristic.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "flow rate" + "lbl" : "negative regulation of phosphorus metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000242", + "id" : "http://purl.obolibrary.org/obo/PATO_0001828", "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of male and external sexual characteristics of female.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete flinch reflex" + "lbl" : "male pseudohermaphrodite" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000241", + "id" : "http://purl.obolibrary.org/obo/PATO_0001829", "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of female and external sexual characteristics of male.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete corneal reflex" + "lbl" : "female pseudohermaphrodite" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001575", + "id" : "http://purl.obolibrary.org/obo/PATO_0001826", "meta" : { "definition" : { - "val" : "A pressure which is relatively low.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A wetness quality that is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low pressure", + "val" : "low wetness", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001825" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001576" } ] }, "type" : "CLASS", - "lbl" : "decreased pressure" + "lbl" : "decreased wetness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002422", + "id" : "http://purl.obolibrary.org/obo/PATO_0001827", "meta" : { "definition" : { - "val" : "Pertaining to the individual parts making up an aggregate fruit like a many-lobed \"berry,\" such as a raspberry.", - "xrefs" : [ "wikipedia:https://en.wikipedia.org/wiki/Acinus" ] + "val" : "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of one sex and external sexual characteristics of the other sex.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Acinus is Latin for berry." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T03:11:10Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "acinar" + "lbl" : "pseudohermaphrodite" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000244", + "id" : "http://purl.obolibrary.org/obo/PATO_0001820", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001444" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete ocular reflex" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001572", - "meta" : { - "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001784" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" @@ -26259,113 +26660,118 @@ }, "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001573", + "id" : "http://purl.obolibrary.org/obo/PATO_0001821", "meta" : { "definition" : { - "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's having equal dimensions or measurements.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's having no opening.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "unperforated", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002112" } ] }, "type" : "CLASS", - "lbl" : "isometrical" + "lbl" : "imperforate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000243", + "id" : "http://purl.obolibrary.org/obo/PATO_0001824", "meta" : { + "definition" : { + "val" : "A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001823" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete lordosis reflex" + "lbl" : "dry" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002420", + "id" : "http://purl.obolibrary.org/obo/PATO_0001825", "meta" : { "definition" : { - "val" : "Having both hydrophilic and hydrophobic (or lipophilic) groups.", - "xrefs" : [ "wikipedia:http://en.wiktionary.org/wiki/amphiphilic" ] + "val" : "A wetness quality that is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T03:04:39Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001826" } ] }, "type" : "CLASS", - "lbl" : "amphiphilic" + "lbl" : "increased wetness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002436", + "id" : "http://purl.obolibrary.org/obo/IAO_0010000", "meta" : { - "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's position being displaced from a reference point.", - "xrefs" : [ "PATOC:AD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:32:22Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Person:Alan Ruttenberg" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Person:Alan Ruttenberg" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has axiom id" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI" } ] }, - "type" : "CLASS", - "lbl" : "offset" + "type" : "PROPERTY", + "lbl" : "has axiom label" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000257", + "id" : "http://purl.obolibrary.org/obo/PATO_0001822", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of whether the bearer's being covered by a liquid.", + "xrefs" : [ "wordreference.com:wordreference.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute taste_acuity" + "lbl" : "wetness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001589", + "id" : "http://purl.obolibrary.org/obo/PATO_0001823", "meta" : { "definition" : { - "val" : "Increased, intensified.", + "val" : "A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid.", "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Obsoleted because it used to be a child of behavioral quality, which really meant increased magnitude of a given behavior. Now this can be done by using increased magnitude with another quality." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", - "val" : "PATO:0002017" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001824" } ] }, "type" : "CLASS", - "lbl" : "obsolete enhanced" + "lbl" : "wet" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001105", + "id" : "http://purl.obolibrary.org/obo/PATO_0000507", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -26376,174 +26782,179 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute strain value" + "lbl" : "obsolete disease sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002437", + "id" : "http://purl.obolibrary.org/obo/PATO_0001839", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being locked together or interconnected to another entity.", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "A fluid flow that is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high flow", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:37:13Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001838" } ] }, "type" : "CLASS", - "lbl" : "interlocked with" + "lbl" : "increased fluid flow" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000256", + "id" : "http://purl.obolibrary.org/obo/PATO_0000506", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete taste type" + "lbl" : "obsolete absolute sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001106", + "id" : "http://purl.obolibrary.org/obo/PATO_0000509", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative strain value" + "lbl" : "obsolete stress sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002434", + "id" : "http://purl.obolibrary.org/obo/PATO_0001837", "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity.", - "xrefs" : [ "PATOC:WC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:29:55Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001847" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "perpendicular to" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001587", + "id" : "http://purl.obolibrary.org/obo/PATO_0001838", "meta" : { "definition" : { - "val" : "A variability of rate which is relatively high.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A flow that is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high variability of rate", + "val" : "low flow", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001839" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001588" } ] }, "type" : "CLASS", - "lbl" : "increased variability of rate" + "lbl" : "decreased fluid flow" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000259", + "id" : "http://purl.obolibrary.org/obo/PATO_0000508", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete visual_ability" + "lbl" : "obsolete relative sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001103", + "id" : "http://purl.obolibrary.org/obo/PATO_0001831", "meta" : { + "definition" : { + "val" : "A female fertility which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high female fertility", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001830" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative stiffness value" + "lbl" : "increased female fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002435", + "id" : "http://purl.obolibrary.org/obo/PATO_0001832", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer touching another entity along a border or with a projecting part.", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "A male fertility which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "abut", + "val" : "high male fertility", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:31:12Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001833" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "abutting" + "lbl" : "increased male fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000258", + "id" : "http://purl.obolibrary.org/obo/PATO_0000501", "meta" : { + "definition" : { + "val" : "A phase which occurs during dark cycle.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative taste_acuity" + "lbl" : "dark phase" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001588", + "id" : "http://purl.obolibrary.org/obo/PATO_0001830", "meta" : { "definition" : { - "val" : "A variability of rate which is relatively low.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A female fertility which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low variability of rate", + "val" : "low female fertility", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -26551,204 +26962,196 @@ "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001587" - } ] - }, - "type" : "CLASS", - "lbl" : "decreased variability of rate" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001104", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "http://purl.obolibrary.org/obo/PATO_0001831" } ] }, "type" : "CLASS", - "lbl" : "obsolete strain value" + "lbl" : "decreased female fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001109", + "id" : "http://purl.obolibrary.org/obo/PATO_0000500", "meta" : { + "definition" : { + "val" : "A phase which occurs earlier than the natural start time.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute amplitude value" + "lbl" : "advanced phase" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002438", + "id" : "http://purl.obolibrary.org/obo/PATO_0001835", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being located or placed beneath the skin.", - "xrefs" : [ "thefreedictionary:thefreedictionary" ] + "val" : "A fertility which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "subcutaneous", + "val" : "high fertility", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:41:50Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001834" } ] }, "type" : "CLASS", - "lbl" : "subdermal" + "lbl" : "increased fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001107", + "id" : "http://purl.obolibrary.org/obo/PATO_0000503", "meta" : { + "definition" : { + "val" : "A phase which occurs during the light cycle.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete density value" + "lbl" : "light phase" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001108", + "id" : "http://purl.obolibrary.org/obo/PATO_0001836", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer with some kind of aperture or opening that is blocked or clogged.", + "xrefs" : [ "answers.com:answers.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative amplitude value" + "lbl" : "congested" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002439", + "id" : "http://purl.obolibrary.org/obo/PATO_0000502", "meta" : { "definition" : { - "val" : "An angular shape quality inhering in a bearer by virtue of the bearer's having two angles in its length giving the bearer the form of the letter W.", - "xrefs" : [ "PATOC:WC" ] + "val" : "A quality of a process which starts later than the natural start time or the reference process.", + "xrefs" : [ "PATOC:LC" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "late", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:45:54Z" } ] }, "type" : "CLASS", - "lbl" : "w-shaped" + "lbl" : "delayed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001581", + "id" : "http://purl.obolibrary.org/obo/PATO_0001833", "meta" : { "definition" : { - "val" : "A contractility which is relatively low.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A male fertility which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low contractility", + "val" : "low male fertility", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001832" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001580" } ] }, "type" : "CLASS", - "lbl" : "decreased contractility" + "lbl" : "decreased male fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001582", + "id" : "http://purl.obolibrary.org/obo/PATO_0000505", "meta" : { "definition" : { - "val" : "A spatial quality inhering in an inactive muscle or muscle fibers by virtue of the bearer's exhibiting gradual lengthening.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "GO has now relevant relation terms which should be used instead." - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000504" } ] }, "type" : "CLASS", - "lbl" : "obsolete relaxational quality" + "lbl" : "rhythmic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000251", + "id" : "http://purl.obolibrary.org/obo/PATO_0000504", "meta" : { + "definition" : { + "val" : "A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000505" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete startle reflex" + "lbl" : "arrhythmic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001580", + "id" : "http://purl.obolibrary.org/obo/PATO_0001834", "meta" : { "definition" : { - "val" : "A contractility which is relatively high.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A fertility which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high contractility", + "val" : "low fertility", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001835" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001581" } ] }, "type" : "CLASS", - "lbl" : "increased contractility" + "lbl" : "decreased fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000250", + "id" : "http://purl.obolibrary.org/obo/PATO_0000518", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete spinal reflex" + "lbl" : "obsolete chemical sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001101", + "id" : "http://purl.obolibrary.org/obo/PATO_0000517", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -26759,167 +27162,137 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete stiffness value" + "lbl" : "obsolete abiotic stress sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000253", + "id" : "http://purl.obolibrary.org/obo/PATO_0001848", "meta" : { + "definition" : { + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved asymmetrically.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete swallowing reflex" + "lbl" : "asymmetrically curved" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001585", + "id" : "http://purl.obolibrary.org/obo/PATO_0000519", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to transmit of an entity through a medium.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Examples could be heat or electricity or sound." + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "conductivity" + "lbl" : "obsolete humidity sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002432", + "id" : "http://purl.obolibrary.org/obo/PATO_0001849", "meta" : { "definition" : { - "val" : "A shape that is in the form of a spade.", - "xrefs" : [ "PATOC:WC" ] + "val" : "A texture quality inhering in a bearer by virtue of a portion of the bearer's surface being scraped away.", + "xrefs" : [ "answers.com:answers.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:26:49Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "spade-shaped" + "lbl" : "abrased" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002433", + "id" : "http://purl.obolibrary.org/obo/GO_0098590", "meta" : { "definition" : { - "val" : "A surface feature shape marked by large amounts of relief, often with multiple ridges and grooves in close association. Topographically complex.", - "xrefs" : [ "PATOC:AD" ] + "val" : "A membrane that is a (regional) part of the plasma membrane.", + "xrefs" : [ "GOC:dos" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "region of plasma membrane", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:27:55Z" + "val" : "2014-03-06T11:55:32Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term should not be used for direct manual annotation as it should always be possible to choose a more specific subclass." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "cellular_component" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "davidos" } ] }, "type" : "CLASS", - "lbl" : "sculpted surface" + "lbl" : "plasma membrane region" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000252", + "id" : "http://purl.obolibrary.org/obo/PATO_0000510", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete suckling reflex" + "lbl" : "obsolete temperature sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001586", + "id" : "http://purl.obolibrary.org/obo/PATO_0001842", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits rate variation or change.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A concentration quality inhering in a bearer by virtue of the bearer's containing acid (hydrogen ions).", + "xrefs" : [ "biology-online:biology-online" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "variability of rate" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001102", - "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pH", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute stiffness value" + "lbl" : "acidity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001583", + "id" : "http://purl.obolibrary.org/obo/PATO_0001843", "meta" : { "definition" : { - "val" : "A variability which is relatively low.", - "xrefs" : [ "PATO:GVG" ] + "val" : "An acidity which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low variability", + "val" : "low acidity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001844" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001584" } ] }, "type" : "CLASS", - "lbl" : "decreased variability" + "lbl" : "decreased acidity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002430", - "meta" : { - "definition" : { - "val" : "A shape quality in which the bearer is shaped like a narrow band; ligulate.", - "xrefs" : [ "thefreedictionary:thefreedictionary" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:21:17Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - } ] - }, - "type" : "CLASS", - "lbl" : "strap-shaped" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000255", + "id" : "http://purl.obolibrary.org/obo/PATO_0000512", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -26930,66 +27303,39 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete taste_acuity" + "lbl" : "obsolete relative disease sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001100", + "id" : "http://purl.obolibrary.org/obo/PATO_0001840", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001485" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete position value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001584", - "meta" : { - "definition" : { - "val" : "A variability which is relatively high.", - "xrefs" : [ "PATO:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high variability", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001583" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "increased variability" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002431", + "id" : "http://purl.obolibrary.org/obo/PATO_0001841", "meta" : { "definition" : { - "val" : "A shape quality in which the bearer possesses a gradual, yet distinct, thinning from a wide starting point.", - "xrefs" : [ "PATOC:WC" ] + "val" : "An intensity which is characterized by temporary abatement in severity.", + "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:24:46Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "waisted" + "lbl" : "remittent intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000254", + "id" : "http://purl.obolibrary.org/obo/PATO_0000511", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -27000,1137 +27346,1335 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete vibrissae reflex" + "lbl" : "obsolete absolute disease sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0019222", + "id" : "http://purl.obolibrary.org/obo/PATO_0000514", "meta" : { - "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", - "xrefs" : [ "GOC:go_curators" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "regulation of organismal metabolic process", - "xrefs" : [ "GOC:tb" ] - }, { - "pred" : "hasExactSynonym", - "val" : "regulation of metabolism", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "regulation of multicellular organismal metabolic process", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0044246" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "regulation of metabolic process" + "lbl" : "obsolete intolerant value" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0019220", + "id" : "http://purl.obolibrary.org/obo/PATO_0001846", "meta" : { "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates.", - "xrefs" : [ "GOC:go_curators" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel.", + "xrefs" : [ "answers.com:answers.com" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "regulation of phosphate metabolism", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "regulation of phosphate metabolic process" + "lbl" : "tangled" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0031324", + "id" : "http://purl.obolibrary.org/obo/PATO_0001847", "meta" : { "definition" : { - "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.", - "xrefs" : [ "GOC:mah" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically.", + "xrefs" : [ "WordNet:WordNet" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "inhibition of cellular metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "downregulation of cellular metabolic process", - "xrefs" : [ ] - }, { "pred" : "hasExactSynonym", - "val" : "down-regulation of cellular metabolic process", + "val" : "stenosis", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "negative regulation of cellular metabolism", + "val" : "stricture", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "down regulation of cellular metabolic process", + "val" : "stenotic", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001837" } ] }, "type" : "CLASS", - "lbl" : "negative regulation of cellular metabolic process" + "lbl" : "constricted" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0031325", + "id" : "http://purl.obolibrary.org/obo/PATO_0000513", "meta" : { "definition" : { - "val" : "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.", - "xrefs" : [ "GOC:mah" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "upregulation of cellular metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "up regulation of cellular metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "positive regulation of cellular metabolism", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "activation of cellular metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "stimulation of cellular metabolic process", + "val" : "insensitive", "xrefs" : [ ] }, { - "pred" : "hasExactSynonym", - "val" : "up-regulation of cellular metabolic process", + "pred" : "hasRelatedSynonym", + "val" : "resistant", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000516" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - 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Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body.", + "xrefs" : [ "GOC:cilia", "GOC:curators", "GOC:kmv", "GOC:vw", "ISBN:0198547684", "PMID:16824949", "PMID:17009929", "PMID:20144998" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001592" + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_generic" ], + "xrefs" : [ { + "val" : "Wikipedia:Cilium" + }, { + "val" : "NIF_Subcellular:sao787716553" + }, { + "val" : "FMA:67181" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "primary cilium", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "microtubule-based flagellum", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "eukaryotic flagellum", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "flagellum", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0072372" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms." } ] }, "type" : "CLASS", - "lbl" : "decreased curvature" + "lbl" : "cilium" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002440", + "id" : "http://purl.obolibrary.org/obo/PATO_0002269", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the degree of the bearer's highly topographical with ridges, pits, rugosity or other surface structures.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A structural quality of the collection or massing of one physical object within another physical object.", + "xrefs" : [ "PATOC:CVC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "pooled", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T10:57:42Z" + "val" : "2010-10-26T01:57:02Z" } ] }, "type" : "CLASS", - "lbl" : "ornamentation" + "lbl" : "accumulation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001590", + "id" : "http://purl.obolibrary.org/obo/PATO_0002263", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's coinciding spatially, partially or wholly with another entity.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group.", + "xrefs" : [ "url:http://en.wikipedia.org/wiki/Dephosphorylation" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "overlap", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-16T09:04:21Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002220" } ] }, "type" : "CLASS", - "lbl" : "overlap with" + "lbl" : "dephosphorylated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000262", + "id" : "http://purl.obolibrary.org/obo/PATO_0002264", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being arranged in a systematic fashion.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-16T10:22:52Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete visual placing" + "lbl" : "organization quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001591", + "id" : "http://purl.obolibrary.org/obo/PATO_0002261", "meta" : { "definition" : { - "val" : "A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's location within another entity.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-09T09:36:56Z" } ] }, "type" : "CLASS", - "lbl" : "curvature" + "lbl" : "located in" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000261", + "id" : "http://purl.obolibrary.org/obo/PATO_0002262", "meta" : { "definition" : { - "val" : "A quality of a single physical entity which is held by a bearer when the latter exhibits a state of growth, differentiation, or development.", - "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] + "val" : "A quality inhering in a protein or a molecule by virtue of the addition of a phosphate (PO4) group to the bearer.", + "xrefs" : [ "url:http://en.wikipedia.org/wiki/Phosphorylation" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-16T08:57:56Z" } ] }, "type" : "CLASS", - "lbl" : "maturity" + "lbl" : "phosphorylation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001596", + "id" : "http://purl.obolibrary.org/obo/PATO_0002267", "meta" : { - "definition" : { - "val" : "A depth quality which is relatively high.", - "xrefs" : [ "PATO:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "deep", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001472" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-05T12:34:31Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001666" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased depth" + "lbl" : "edge shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001112", + "id" : "http://purl.obolibrary.org/obo/PATO_0002268", "meta" : { + "definition" : { + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being located in a position equidistant from edges.", + "xrefs" : [ "PATOC:OREGON" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-05T01:09:32Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete energy value" + "lbl" : "centered" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000264", + "id" : "http://purl.obolibrary.org/obo/PATO_0002265", "meta" : { + "definition" : { + "val" : "A behavioral quality of a process inhering in a bearer by virtue of the bearer's disposition to exhibit marked activity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - 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"val" : "gkoutos" + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T11:01:46Z" + "val" : "2010-10-05T12:31:16Z" } ] }, "type" : "CLASS", - "lbl" : "level with" + "lbl" : "3-D shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001113", + "id" : "http://purl.obolibrary.org/obo/PATO_0002260", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's being partially upright in position or posture.", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "semi upright", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-08T03:27:21Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - 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"val" : "quality" + "val" : "chebi_ontology" } ] }, "type" : "CLASS", - "lbl" : "everted" + "lbl" : "mineral" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000263", + "id" : "http://purl.obolibrary.org/obo/GO_0005102", "meta" : { + "definition" : { + "val" : "Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.", + "xrefs" : [ "GOC:bf", "GOC:ceb", "ISBN:0198506732" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_mouse" ], + "xrefs" : [ { + "val" : "Wikipedia:Ligand_(biochemistry)" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "receptor ligand", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "receptor-associated protein activity", + "xrefs" : [ ] + }, { + "pred" : "hasBroadSynonym", + "val" : "receptor binding", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - 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"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T11:03:49Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-11-16T11:22:57Z" } ] }, "type" : "CLASS", - "lbl" : "mineralized" + "lbl" : "mottled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002441", + "id" : "http://purl.obolibrary.org/obo/PATO_0002275", "meta" : { "definition" : { - "val" : "A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures.", - "xrefs" : [ "PATOC:AD" ] + "val" : "A color pattern quality inhering in a bearer by virtue of the bearer's color pattern in which light and dark colors (for example white and black) are codistributed to create a visual impression.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T10:59:42Z" + "val" : "2010-11-16T11:24:15Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002442" + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "ornamented" + "lbl" : "high contrast color pattern" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001594", + "id" : "http://purl.obolibrary.org/obo/PATO_0002272", "meta" : { "definition" : { - "val" : "A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located at the same continuous distance relative to another object.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-26T02:07:42Z" } ] }, "type" : "CLASS", - "lbl" : "arched" + "lbl" : "parallel to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001110", + "id" : "http://purl.obolibrary.org/obo/PATO_0002273", "meta" : { + "definition" : { + "val" : "Multicolored quality inhering in a bearer by virtue of the bearer's being colored with a variegated pattern resembling marble,.", + "xrefs" : [ "url:http://www.oed.com/" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-11-16T11:17:32Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute density value" + "lbl" : "marbled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000266", + "id" : "http://purl.obolibrary.org/obo/PATO_0002278", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's participating in a joint with another entity.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-01-20T05:39:18Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute visual_acuity" - }, { - "id" : "http://purl.obolibrary.org/obo/pato#disposition_slim", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Disposition slim" - } ] - }, - "type" : "PROPERTY" + "lbl" : "articulated with" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000265", + "id" : "http://purl.obolibrary.org/obo/PATO_0002279", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being strongly articulated with another entity.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-01-20T05:39:59Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative visual_ability" + "lbl" : "tightly articulated with" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001595", + "id" : "http://purl.obolibrary.org/obo/PATO_0002276", "meta" : { "definition" : { - "val" : "A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimenision.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A color pattern inhering in a bearer by virtue of bearer's exhibiting vertical bars of one hue or degree of saturation crossing another.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-11-16T11:30:40Z" } ] }, "type" : "CLASS", - "lbl" : "depth" + "lbl" : "barred" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001111", + "id" : "http://purl.obolibrary.org/obo/PATO_0002277", "meta" : { + "definition" : { + "val" : "A quality of certain surfaces which appear to change colour as the angle of view changes.", + "xrefs" : [ "url:http://en.wikipedia.org/wiki/Iridescence" ] + }, "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-12-12T12:37:41Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative density value" + "lbl" : "iridescent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002442", + "id" : "http://purl.obolibrary.org/obo/PATO_0002270", "meta" : { "definition" : { - "val" : "A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures.", - "xrefs" : [ "PATOC:AD" ] + "val" : "An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "accumulated", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T11:00:20Z" + "val" : "2010-10-26T02:00:20Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "george" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002441" + "val" : "http://purl.obolibrary.org/obo/PATO_0002271" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "unornamented" + "lbl" : "increased accumulation" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0031323", + "id" : "http://purl.obolibrary.org/obo/PATO_0002271", "meta" : { "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.", - "xrefs" : [ "GOC:mah" ] + "val" : "An accumulation which is relative low.", + "xrefs" : [ "PATOC:GVG" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "regulation of cellular metabolism", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002270" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-26T02:04:45Z" } ] }, "type" : "CLASS", - "lbl" : "regulation of cellular metabolic process" + "lbl" : "decreased accumulation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002458", + "id" : "http://purl.obolibrary.org/obo/PATO_0002285", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer being thin and lacking outgrowths.", - "xrefs" : [ "PATOC:JL" ] + "val" : "Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity.", + "xrefs" : [ "PATOC:CVS" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-04-09T06:03:56Z" + "val" : "2011-03-10T09:07:57Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002286" } ] }, "type" : "CLASS", - "lbl" : "pin-like" + "lbl" : "increased branchiness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000279", + "id" : "http://purl.obolibrary.org/obo/PATO_0002286", "meta" : { "definition" : { - "val" : "A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity.", + "xrefs" : [ "PATOC:CVS" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-03-10T09:08:37Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002285" } ] }, "type" : "CLASS", - "lbl" : "male fertility" + "lbl" : "decreased branchiness" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002022", + "id" : "http://purl.obolibrary.org/obo/PATO_0002283", "meta" : { + "definition" : { + "val" : "A mobility which is relative low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-09-17T13:52:24Z" + "val" : "2011-03-09T09:16:47Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" - } ] - }, - "type" : "PROPERTY", - "lbl" : "directly regulated by" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001127", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002282" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete work value" + "lbl" : "decreased mobility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002459", + "id" : "http://purl.obolibrary.org/obo/PATO_0002284", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a sepal,", - "xrefs" : [ "PATOC:JL" ] + "val" : "A physical quality that pertains by virtue of a pulling force that is directed away from the bearer and attempts to stretch or elongate the bearer.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-04-09T06:04:36Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - } ] - }, - "type" : "CLASS", - "lbl" : "sepal-like" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000278", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "george" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-03-10T08:41:21Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete hybrid fertility" + "lbl" : "tension" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002023", + "id" : "http://purl.obolibrary.org/obo/PATO_0002289", "meta" : { "definition" : { - "val" : "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.", - "xrefs" : [ "GOC:dos" ] + "val" : "A hairy quality inhering in a bearer by virtue of the bearer's being covered with setae.", + "xrefs" : [ "ISBN:0913424137" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-09-17T13:52:38Z" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Setose as a label is used extensively to describe insect phenotypes that have hairy-like appearances (i.e., they are covered in setae, not the hairs of mammals). A bristle is a type of seta." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" - } ] - }, - "type" : "PROPERTY", - "lbl" : "directly negatively regulated by" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001128", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-04-04T08:44:10Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute work value" + "lbl" : "setose" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001125", + "id" : "http://purl.obolibrary.org/obo/PATO_0002287", "meta" : { + "definition" : { + "val" : "An elasticity which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-03-30T11:50:21Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002288" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute pressure value" + "lbl" : "increased elasticity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002456", + "id" : "http://purl.obolibrary.org/obo/PATO_0002288", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of an inflorescence.", - "xrefs" : [ "PATOC:JL" ] + "val" : "An elasticity which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002287" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-04-09T06:02:05Z" + "val" : "2011-03-30T11:50:39Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "inflorescence-like" + "lbl" : "decreased elasticity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002024", + "id" : "http://purl.obolibrary.org/obo/GO_0030990", "meta" : { "definition" : { - "val" : "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.", - "xrefs" : [ "GOC:dos" ] + "val" : "A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules.", + "xrefs" : [ "GOC:cilia", "GOC:kmv", "PMID:14570576", "PMID:22118932", "PMID:23945166" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "intraflagellar transport particle", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "IFT complex", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "intraflagellar transport complex", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-09-17T13:52:47Z" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that we deem cilia and microtubule-based flagella to be equivalent." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" } ] }, - "type" : "PROPERTY", - "lbl" : "directly positively regulated by" + "type" : "CLASS", + "lbl" : "intraciliary transport particle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002457", + "id" : "http://purl.obolibrary.org/obo/PATO_0002281", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a leaf.", - "xrefs" : [ "PATOC:JL" ] + "val" : "A cuscpidate quality inhering in a bearer by virtue of the bearer possessing two cusps.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "bicuspid", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-04-09T06:02:58Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-02-07T03:13:18Z" } ] }, "type" : "CLASS", - "lbl" : "leaf-like" + "lbl" : "biscupidate" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002025", + "id" : "http://purl.obolibrary.org/obo/PATO_0002282", "meta" : { "definition" : { - "val" : "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.", - "xrefs" : [ "GOC:dos" ] + "val" : "A mobility which is relative high.", + "xrefs" : [ "PATO:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-09-22T14:14:36Z" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations." + "val" : "2011-03-09T09:16:03Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" - } ] - }, - "type" : "PROPERTY", - "lbl" : "has effector activity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001126", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002283" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative pressure value" + "lbl" : "increased mobility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001129", + "id" : "http://purl.obolibrary.org/obo/PATO_0002280", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's possessing a broad surface in articulation with another entity.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-01-20T05:40:29Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative work value" + "lbl" : "broadly articulated with" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000271", + "id" : "http://purl.obolibrary.org/obo/PATO_0002296", "meta" : { + "definition" : { + "val" : "A texture quality inhering in a surface by virtue of the bearer's being marked by the presence of small, shallow, regular depressions called fovae.", + "xrefs" : [ "Book:Book" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "foveolate", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "pitted", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-05-17T07:59:30Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete prepulse inhibition" + "lbl" : "foveate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002450", + "id" : "http://purl.obolibrary.org/obo/PATO_0002297", "meta" : { "definition" : { - "val" : "A hardness quality of giving significant resistance to pressure.", - "xrefs" : [ "PATOC:CM" ] + "val" : "A cellular motility which is lower relative to the normal or average.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-02-26T02:02:38Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002298" } ] }, "type" : "CLASS", - "lbl" : "firm" + "lbl" : "decreased cellular motility" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002019", + "id" : "http://purl.obolibrary.org/obo/PATO_0002294", "meta" : { "definition" : { - "val" : "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.", - "xrefs" : [ ] + "val" : "A texture that is uniformly covered in short, oblong, or trench-like depressions.", + "xrefs" : [ "Book:Book" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-07-19T17:30:36Z" + "val" : "2011-05-03T03:12:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "has ligand" + "type" : "CLASS", + "lbl" : "scrobiculate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002451", + "id" : "http://purl.obolibrary.org/obo/PATO_0002295", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's exhibiting a phenotypic difference between males and females of the same species.", - "xrefs" : [ "PATOC:WC" ] + "val" : "A surface feature shape inhering in a surface by virtue of the bearer's being divided by ridge-like structures into a number of small, irregular spaces.", + "xrefs" : [ "Book:Book" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -28138,959 +28682,1383 @@ "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-03-11T09:22:04Z" + "val" : "2011-05-17T07:57:45Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "sexually dimorphic" + "lbl" : "areolate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000270", + "id" : "http://purl.obolibrary.org/obo/PATO_0002298", "meta" : { + "definition" : { + "val" : "A cellular motility which is higher relative to the normal or average.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002297" } ] }, "type" : "CLASS", - "lbl" : "obsolete defecation" + "lbl" : "increased cellular motility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001120", + "id" : "http://purl.obolibrary.org/obo/PATO_0002299", "meta" : { + "definition" : { + "val" : "A cylindrical shape that is hollow.", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "tubulate", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "tube-shaped", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "tube like", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-08T06:33:50Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative momentum value" + "lbl" : "tubular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000273", + "id" : "http://purl.obolibrary.org/obo/PATO_0002292", "meta" : { "definition" : { - "val" : "A reproductive quality inhering in an organism or population by virtue of the bearer's potential reproductive capacity ad measured by the number of gametes.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Fecundity" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's underlying structure being capable of change.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "transient structure", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "For example, structures undergoing endochondral ossification change in composition from cartilaginous to ossified." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-05-03T03:01:59Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "fecundity" + "lbl" : "transient" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000272", + "id" : "http://purl.obolibrary.org/obo/PATO_0002293", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's underlying structure not changing over time.", + "xrefs" : [ "PATOC:WD" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "permanent structure", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-05-03T03:03:50Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative neurobehavioral function" + "lbl" : "permanent" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002015", + "id" : "http://purl.obolibrary.org/obo/PATO_0002290", "meta" : { - "definition" : { - "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'." + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-05-24T09:31:17Z" + "val" : "2011-04-18T05:11:33Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "has positive regulatory component activity" + "type" : "CLASS", + "lbl" : "aplastic/hypoplastic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002454", + "id" : "http://purl.obolibrary.org/obo/PATO_0002291", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a carpel.", - "xrefs" : [ "PATO:JL" ] + "val" : "Absence of a tissue or organ due to failure to develop.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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"pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-13T04:29:32Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative power value" + "lbl" : "cup-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000275", + "id" : "http://purl.obolibrary.org/obo/PATO_0002228", "meta" : { + "definition" : { + "val" : "A tapered shape quality inhering in a bearer by virtue of the bearer's tapering gradually to a sharp point.", + "xrefs" : [ "url:http://www.thefreedictionary.com/acuminate" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-15T09:03:18Z" } ] }, "type" : "CLASS", - 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"val" : "A quality inhering in a bearer by virtue of the bearer's architecture bearing resemblence to a corymb type of inflorescence.", - "xrefs" : [ "PATOC:JL" ] + "val" : "A quadrangular shape quality inhering in a bearer by virtue of the bearer's being approximately rectangular.", + "xrefs" : [ "url:http://dictionary.reference.com/browse/subrectangular?qsrc=2446&o=100074" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-19T12:18:57Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-04-09T06:01:02Z" + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "corymb-like" + "lbl" : "subrectangular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001121", + "id" : "http://purl.obolibrary.org/obo/PATO_0002220", "meta" : { + "definition" : { + "val" : "A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group.", + "xrefs" : [ "wikipedia:en.wikipedia.org/wiki/Phosphorylated" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002263" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-09T01:50:14Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete power value" + "lbl" : "phosphorylated" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002017", + "id" : "http://purl.obolibrary.org/obo/PATO_0002223", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-05-24T09:44:33Z" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B." - 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"val" : "2013-04-08T08:43:31Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001485" + "val" : "2010-07-09T01:59:35Z" } ] }, "type" : "CLASS", - "lbl" : "decondensed" + "lbl" : "oxidized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000277", + "id" : "http://purl.obolibrary.org/obo/PATO_0002224", "meta" : { "definition" : { - "val" : "A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter V.", + "xrefs" : [ "PATOC:JE" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-13T04:12:13Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "female fertility" + "lbl" : "V-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002018", + "id" : "http://purl.obolibrary.org/obo/PATO_0002221", "meta" : { "definition" : { - "val" : "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", - "xrefs" : [ ] + "val" : "A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups.", + "xrefs" : [ "Wikipedia:http://en.wiktionary.org/wiki/hyperphosphorylated" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hyperphosphorylated", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002222" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-05-24T09:49:21Z" + "val" : "2010-07-09T01:51:52Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "has component process" + "type" : "CLASS", + "lbl" : "increased phosphorylation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000276", + "id" : "http://purl.obolibrary.org/obo/PATO_0002222", "meta" : { "definition" : { - "val" : "A reproductive quality inhering in the young of an animal by virtue of their number.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully.", + "xrefs" : [ "Wikipedia:http://en.wiktionary.org/wiki/hypophosphorylated" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "litter size", + "pred" : "hasExactSynonym", + "val" : "hypophosporylated", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-09T01:54:22Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002221" } ] }, "type" : "CLASS", - "lbl" : "brood size" + "lbl" : "decreased phosphorylation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002453", + "id" : "http://purl.obolibrary.org/obo/PATO_0002238", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer bring gradually worn away.", - "xrefs" : [ "PATOC:JL" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved forward or upward.", + "xrefs" : [ "url:http://www.thefreedictionary.com/antrorse" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-04-08T08:45:08Z" - } ] - }, - "type" : "CLASS", - "lbl" : "eroding" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001122", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "2010-07-23T02:22:56Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute power value" + "lbl" : "antrorse" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000209", + "id" : "http://purl.obolibrary.org/obo/PATO_0002239", "meta" : { + "definition" : { + "val" : "A concave 3-D shape that inheres in the bearer by virtue of the bearer's nearly) symmetric shape wide at its ends and narrow in the middle, resembling the figure of number 8.", + "xrefs" : [ "url:http://en.wikipedia.org/wiki/Hourglass-shaped" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "figure 8 shaped", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-23T02:25:24Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete digestive function" + "lbl" : "hourglass-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001534", + "id" : "http://purl.obolibrary.org/obo/PATO_0002236", "meta" : { "definition" : { - "val" : "A color pattern inhering in a bearer by virtue of bearer's having 3 or more hues or degrees of saturations.", - "xrefs" : [ "merriam-webster.:merriam-webster." ] + "val" : "Shape quality inhering in a bearer by virtue of the bearer's being shaped like a wing.", + "xrefs" : [ "url:http://www.thefreedictionary.com/aliform" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "wing-shaped", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-23T02:19:14Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-12-02T09:28:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "rfoulger" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute rate value" + "lbl" : "negative regulation of signaling receptor activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000685", + "id" : "http://purl.obolibrary.org/obo/PATO_0002230", "meta" : { + "definition" : { + "val" : "A triangular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, triangular.", + "xrefs" : [ "url:http://www.thefreedictionary.com/Subtriangular" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-19T12:20:59Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative incidence value" + "lbl" : "subtriangular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001535", + "id" : "http://purl.obolibrary.org/obo/PATO_0002231", "meta" : { "definition" : { - "val" : "A color pattern inhering in a bearer by virtue of bearer's being marked with small spots, patches, or specks of hue or degree of saturation differing from that of the background.", - "xrefs" : [ "merriam-webster.:merriam-webster." ] + "val" : "A split shape quality inhering in a bearer by virtue of the bearer's having or being divided into many lobes or similar segments.", + "xrefs" : [ "url:http://www.thefreedictionary.com/multifid" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "speckled", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-19T12:23:02Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dappled" + "lbl" : "multifid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000201", + "id" : "http://purl.obolibrary.org/obo/GO_2000273", "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of signaling receptor activity.", + "xrefs" : [ "GOC:obol" ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "rfoulger" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-12-02T09:28:50Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete memory" + "lbl" : "positive regulation of signaling receptor activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000688", + "id" : "http://purl.obolibrary.org/obo/PATO_0002234", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A notched shape quality inhering in a bearer by virtue of the bearer's having a notched tip or edge.", + "xrefs" : [ "url:http://www.thefreedictionary.com/emarginate" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000695" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-19T04:25:58Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "variegated", + "val" : "depigmented", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002248" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-09T04:17:04Z" } ] }, "type" : "CLASS", - "lbl" : "multi-colored" + "lbl" : "unpigmented" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000687", + "id" : "http://purl.obolibrary.org/obo/PATO_0002247", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's having or lacking of substances produced by living organisms that have a color resulting from selective color absorption.", + "xrefs" : [ "url:http://en.wikipedia.org/wiki/Biological_pigment" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-09T04:14:00Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - 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"xrefs" : [ "edp:edp" ] + "val" : "A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having three lobes.", + "xrefs" : [ "url:http://www.thefreedictionary.com/trilobed" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "insoluble", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001537" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-28T12:57:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - 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"val" : "A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop.", + "xrefs" : [ "url:wordnetweb.princeton.edu/perl/webwn" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "uninterrupted", + "val" : "drop shaped", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000690" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000429" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-23T02:31:11Z" } ] }, "type" : "CLASS", - 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"id" : "http://purl.obolibrary.org/obo/PATO_0001539", + "id" : "http://purl.obolibrary.org/obo/PATO_0002246", "meta" : { "definition" : { - "val" : "A compositional quality inhering in an bearer by virtue of the bearer's quantities or relative ratios of amylose of the inhering entity.", + "val" : "A force which is relative low.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "amylose compositionality", + "val" : "decreased force amplitude", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-04T11:13:13Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002245" } ] }, "type" : "CLASS", - 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}, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete defensive function" + "lbl" : "fluid flow rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001536", + "id" : "http://purl.obolibrary.org/obo/PATO_0002244", "meta" : { "definition" : { - "val" : "A molecular quality that inheres in a molecular entity by virtue of the bearer's disposition to dissolve in a liquid.", - "xrefs" : [ "edp:edp" ] + "val" : "A flow rate quality inhering in a substance by virtue of the mass of substance which passes through a given surface per unit time.", + "xrefs" : [ "url:http://en.wikipedia.org/wiki/Mass_flow_rate" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-28T03:02:03Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "solubility" + "lbl" : "mass flow rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001537", + "id" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "meta" : { "definition" : { - "val" : "A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid.", - "xrefs" : [ "edp:edp" ] + "val" : "q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "soluble", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001538" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'." + } ] + }, + "type" : "PROPERTY", + "lbl" : "increased_in_magnitude_relative_to" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_01000254", + "meta" : { + "definition" : { + "val" : "A system which has the disposition to environ one or more material entities.", + "xrefs" : [ "DOI:10.1186/2041-1480-4-43" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "environment", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "soluble in" + "lbl" : "environmental system" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000207", + "id" : "http://purl.obolibrary.org/obo/RO_0002180", "meta" : { + "definition" : { + "val" : "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "xrefs" : [ { + "val" : "RO:0002180" + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_component" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:Componency" } ] }, - "type" : "CLASS", - "lbl" : "obsolete circulatory function" + "type" : "PROPERTY", + "lbl" : "has component" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000680", + "id" : "http://purl.obolibrary.org/obo/PATO_0002258", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a point.", + "xrefs" : [ "PATOC:http://www.merriam-webster.com/dictionary/pointed" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-08T03:15:16Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute temporal value" + "lbl" : "pointed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000682", + "id" : "http://purl.obolibrary.org/obo/PATO_0002259", "meta" : { + "definition" : { + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located near in space in relation to another entity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "vicinity of", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "close to", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "approaches", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "near to", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-08T03:20:06Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001771" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete rate value" + "lbl" : "adjacent to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001530", + "id" : "http://purl.obolibrary.org/obo/PATO_0002252", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's behavior.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's being flattened along the antero-posterior axis.", + "xrefs" : [ "PATOC:JC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "behavioral quality of occurrent", + "val" : "antero-posteriorly compressed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-16T03:57:42Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "behavioral quality of a process" + "lbl" : "antero-posteriorly flattened" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001531", + "id" : "http://purl.obolibrary.org/obo/PATO_0002253", "meta" : { "definition" : { - "val" : "A cellular quality that exists by virtue of the disposition of the cell to adhere to other cells and molecules, through the emergent action of the molecular parts of the cell surface.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's being roundish, flattish shape, possibly with a slightly angled edge.", + "xrefs" : [ "PATOC:CVC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "plate-like", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-16T03:57:48Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "cellular adhesivity" + "lbl" : "platelike" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000681", + "id" : "http://purl.obolibrary.org/obo/PATO_0002250", "meta" : { + "definition" : { + "val" : "A degree of pigmentation quality that is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hyperpigmented", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002251" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-09T04:17:19Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete incidence value" + "lbl" : "increased pigmentation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000684", + "id" : "http://purl.obolibrary.org/obo/PATO_0002251", "meta" : { + "definition" : { + "val" : "A degree of pigmentation quality that is relative low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hypopigmented", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-09T04:17:37Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002250" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute incidence value" + "lbl" : "decreased pigmentation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000200", + "id" : "http://purl.obolibrary.org/obo/PATO_0002256", "meta" : { + "definition" : { + "val" : "A cuscpidate quality inhering in a bearer by virtue of the bearer possessing three cusps.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "tricuspid", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-08T02:21:50Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete learning" + "lbl" : "tricuspidate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000683", + "id" : "http://purl.obolibrary.org/obo/PATO_0002257", "meta" : { + "definition" : { + "val" : "A cuscpidate quality inhering in a bearer by virtue of the bearer possessing more than one cusp.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-08T02:23:22Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative temporal value" + "lbl" : "multicuspidate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001545", + "id" : "http://purl.obolibrary.org/obo/PATO_0002254", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking.", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's surface becoming more extended in a plane.", + "xrefs" : [ "PATOC:CVS" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "stiff", - "xrefs" : [ ] - }, { "pred" : "hasRelatedSynonym", - "val" : "stiffness", + "val" : "compressed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001544" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-16T03:59:34Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Becoming flat but not necessarily completely flat." } ] }, "type" : "CLASS", - "lbl" : "inflexible" + "lbl" : "flattened" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0010001", + "id" : "http://purl.obolibrary.org/obo/PATO_0002255", "meta" : { "definition" : { - "val" : "A structural quality inhering in the bearer by virtue of the bearer consisting of multiple structures lacking any physical connection to each other.", - "xrefs" : [ "GOC:dos" ] + "val" : "Texture quality inhering in a bearer by virtue of the bearer's being marked with one or more channels.", + "xrefs" : [ "PATOC:JE" ] }, - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-12-12T08:43:17Z" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "creased", + "xrefs" : [ ] }, { + "pred" : "hasRelatedSynonym", + "val" : "channeled", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "davidos" + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-01T10:27:48Z" } ] }, "type" : "CLASS", - "lbl" : "disconnected" + "lbl" : "grooved" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000697", + "id" : "http://purl.obolibrary.org/obo/PATO_0001336", "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in an individual whose sex is unknown.", + "xrefs" : [ "MGED:MGED" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Unknown is not a type of sex." } ] }, "type" : "CLASS", - "lbl" : "obsolete relative texture value" + "lbl" : "obsolete unknown sex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000213", + "id" : "http://purl.obolibrary.org/obo/RO_0002297", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "results_in_formation_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GOC:mtg_berkeley_2013" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists." }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "results in formation of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000004", + "meta" : { + "definition" : { + "val" : "A quality of inhering in a bearer by virtue of the bearer's disposition to move freely.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Should be defined using translocation." } ] }, "type" : "CLASS", - "lbl" : "obsolete neurobehavioral function" + "lbl" : "mobility" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0044237", + "id" : "http://purl.obolibrary.org/obo/GO_0010646", "meta" : { "definition" : { - "val" : "The chemical reactions and pathways by which individual cells transform chemical substances.", - "xrefs" : [ "GOC:go_curators" ] + "val" : "Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] }, - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "intermediary metabolism", - "xrefs" : [ "GOC:mah" ] - }, { - "pred" : "hasExactSynonym", - "val" : "cellular metabolism", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "cellular metabolic process" + "lbl" : "regulation of cell communication" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001546", + "id" : "http://purl.obolibrary.org/obo/GO_0010647", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity characterized by particles arranged such that their shape and volume are relatively stable.", - "xrefs" : [ "Chemistry:http://chemistry.about.com/od/chemistryglossary/a/soliddefinition.htm" ] + "val" : "Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "solidity", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "quality of a solid" + "lbl" : "positive regulation of cell communication" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000212", + "id" : "http://purl.obolibrary.org/obo/PATO_0000003", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -29101,45 +30069,39 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete neural function" + "lbl" : "obsolete assay" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0010000", + "id" : "http://purl.obolibrary.org/obo/PATO_0001337", "meta" : { "definition" : { - "val" : "A structural quality inhering in the bearer by virtue of the bearer consisting of a single, maximally connected structure.", - "xrefs" : [ "GOC:dos" ] + "val" : "A yeast mating type.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-12-12T08:41:11Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "davidos" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "What counts as maximally connected may be relative to some specification of granularity." } ] }, "type" : "CLASS", - "lbl" : "maximally connected" + "lbl" : "yeast mating type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000696", + "id" : "http://purl.obolibrary.org/obo/PATO_0001334", "meta" : { + "definition" : { + "val" : "A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Diameter" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete texture value" + "lbl" : "diameter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000215", + "id" : "http://purl.obolibrary.org/obo/PATO_0000006", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -29150,60 +30112,57 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete respiratory function" + "lbl" : "obsolete process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001543", + "id" : "http://purl.obolibrary.org/obo/PATO_0000005", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking.", - "xrefs" : [ "merriam-webster:merriam-webster" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "flexibility" + "lbl" : "obsolete absolute activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000699", + "id" : "http://purl.obolibrary.org/obo/PATO_0001335", "meta" : { + "definition" : { + "val" : "A mating type that indicates whether the F plasmid has integrated into the chromosome.", + "xrefs" : [ "MGED:MGED" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete glutinous" + "lbl" : "bacterial mating type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001544", + "id" : "http://purl.obolibrary.org/obo/PATO_0000008", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking.", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's scalar absolute value of the rate of change of the bearer's position.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Velocity" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "bendy", + "pred" : "hasRelatedSynonym", + "val" : "velocity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001545" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "flexible" + "lbl" : "speed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000698", + "id" : "http://purl.obolibrary.org/obo/PATO_0000007", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -29214,220 +30173,204 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete floury" + "lbl" : "obsolete relative activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000214", + "id" : "http://purl.obolibrary.org/obo/RO_0002295", "meta" : { + "definition" : { + "val" : "p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss).", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete reproductive function" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000217", + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "results_in_developmental_progression_of" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Ontology_extensions" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "results in developmental progression of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001338", "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in a population of multiple sexes.", + "xrefs" : [ "MGED:MGED" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "For example a mixture of females and male or males and hermaphrodites." } ] }, "type" : "CLASS", - "lbl" : "obsolete immune function" + "lbl" : "mixed sex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001549", + "id" : "http://purl.obolibrary.org/obo/GO_0010648", "meta" : { "definition" : { - "val" : "A sensitivity toward an external stimulus which is higher than normal/average.", - "xrefs" : [ "PATO:GVG" ] + "val" : "Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "increased sensitivity", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "high sensitivity toward", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001550" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "increased sensitivity toward" + "lbl" : "negative regulation of cell communication" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000216", + "id" : "http://purl.obolibrary.org/obo/PATO_0001339", "meta" : { + "definition" : { + "val" : "A composition quality inhering in an bearer by virtue of the bearer's homogeneity of a biomaterial.", + "xrefs" : [ "MGED:MGED" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete heart rate" + "lbl" : "biomaterial purity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002481", + "id" : "http://purl.obolibrary.org/obo/PATO_0000009", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "is kinase activity" + "type" : "CLASS", + "lbl" : "obsolete absolute speed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000219", + "id" : "http://purl.obolibrary.org/obo/PATO_0000000", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete healing" + "lbl" : "obsolete pato" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001547", + "id" : "http://purl.obolibrary.org/obo/PATO_0001332", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape.", - "xrefs" : [ "Chemistry:http://chemistry.about.com/od/chemistryglossary/a/gasdefinition.htm", "PATOC:GVG" ] + "val" : "A morphology quality inhering in a bearer by virtue of the bearer's lack of distinct morphology.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "gaseous", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "quality of a gas" + "lbl" : "amorphous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001548", + "id" : "http://purl.obolibrary.org/obo/PATO_0001333", "meta" : { "definition" : { - "val" : "A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape.", - "xrefs" : [ "url:http://www.chemistry-dictionary.com/definition/liquid.php" ] + "val" : "A quality of a process which ends later than the natural end time.", + "xrefs" : [ "PATOC:melissa" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "liquidity", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "quality of a liquid" + "lbl" : "temporally extended" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000218", + "id" : "http://purl.obolibrary.org/obo/PATO_0001330", "meta" : { + "definition" : { + "val" : "A flavor quality inhering in a bearer by virtue of the bearer's lacking flavour.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete repair function" + "lbl" : "flavourless" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0120025", + "id" : "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "meta" : { - "definition" : { - "val" : "A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon.", - "xrefs" : [ "GOC:krc" ] - }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-03-21T17:26:07Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "kchris" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Metagenomics GO slim" } ] }, - "type" : "CLASS", - "lbl" : "plasma membrane bounded cell projection" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000691", + "id" : "http://purl.obolibrary.org/obo/PATO_0000002", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000694" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000690", + "id" : "http://purl.obolibrary.org/obo/PATO_0000001", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "intermittent", - "xrefs" : [ ] - }, { "pred" : "hasExactSynonym", - "val" : "interrupted", + "val" : "trait", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000689" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000426" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "quality (PATO)" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000072" } ] }, "type" : "CLASS", - "lbl" : "discontinuous" + "lbl" : "quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001541", + "id" : "http://purl.obolibrary.org/obo/PATO_0001331", "meta" : { "definition" : { - "val" : "An amylose composition quality inhering in an bearer by virtue of the bearer's having high amount of amylose content.", - "xrefs" : [ "TO:TO" ] + "val" : "An odor quality inhering in a bearer by virtue of the bearer's having odour.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -29436,422 +30379,490 @@ } ] }, "type" : "CLASS", - "lbl" : "non-glutinous" + "lbl" : "odorous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0010005", + "id" : "http://purl.obolibrary.org/obo/PATO_0000015", "meta" : { "definition" : { - "val" : "A physical quality of a process that is its spatial distribution. For example, bone mineralization follows stereotypical spatial distribution patterns during development, which may be altered in some phenotypes.", - "xrefs" : [ "orcid:0000-0002-7073-9172" ] + "val" : "A chromatic scalar-circular quality inhering in an object that manifests in an observer by virtue of the dominant wavelength of the visible light; may be subject to fiat divisions, typically into 7 or 8 spectra.", + "xrefs" : [ "PATOC:cjm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2019-07-18T18:49:08Z" } ] }, "type" : "CLASS", - "lbl" : "spatial distribution of a process" + "lbl" : "color hue" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000693", + "id" : "http://purl.obolibrary.org/obo/PATO_0001347", "meta" : { + "definition" : { + "val" : "A bacterial mating type indicating the presence of F plasmid in a bacterial cell.", + "xrefs" : [ "MGED:MGED" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - 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"xrefs" : [ "answers.com:answers.com" ] + "val" : "A scalar chromatic property that is the degree of purity of perceived light.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Color saturation refers to the amount of white light or gray paint mixed in with the hue (single wavelength) and is a measure of color purity." } ] }, "type" : "CLASS", - "lbl" : "heterochronic" + "lbl" : "color saturation" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002479", + "id" : "http://purl.obolibrary.org/obo/PATO_0001345", "meta" : { "definition" : { - "val" : "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.", - "xrefs" : [ ] + "val" : "A S. pombe mating type determined by the mat1-Mc and mat1-Mi on the mat1 locus.", + "xrefs" : [ "PATOC:GVG" ] }, - 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Think of this as a dimmer switch." } ] }, "type" : "CLASS", - "lbl" : "obsolete muscle function" + "lbl" : "color brightness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000695", + "id" : "http://purl.obolibrary.org/obo/PATO_0000019", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase.", + "val" : "A chromatic property that is the relative position of different hues or degrees of saturation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000688" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "synchronous" + "lbl" : "color pattern" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000210", + "id" : "http://purl.obolibrary.org/obo/PATO_0000018", "meta" : { + "definition" : { + "val" : "A luminous flux quality inhering in a bearer by virtue of the bearer's emitting longer wavelength light following the absorption of shorter wavelength radiation; fluorescence is common with aromatic compounds with several rings joined together.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete excretory function" + "lbl" : "fluorescence" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0010002", + "id" : "http://purl.obolibrary.org/obo/PATO_0001349", "meta" : { "definition" : { - "val" : "The velocity of spatial propagation of a process. 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"id" : "http://purl.obolibrary.org/obo/PATO_0002409", + "id" : "http://purl.obolibrary.org/obo/PATO_0000010", "meta" : { - "definition" : { - "val" : "Bounded structure filled with fluid.", - "xrefs" : [ "PATOC:MPATH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:53:18Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "fluid-filled" + "lbl" : "obsolete relative speed" }, { - "id" : "http://purl.obolibrary.org/obo/pato#directly_associated_with", + "id" : "http://purl.obolibrary.org/obo/PATO_0001341", "meta" : { "definition" : { - "val" : "q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. 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"id" : "http://purl.obolibrary.org/obo/RO_0002473", + "id" : "http://purl.obolibrary.org/obo/PATO_0001342", "meta" : { "definition" : { - "val" : "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.", - "xrefs" : [ ] + "val" : "A S. cerevisiae mating type.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "Saccharomyces cerevisiae mating type" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000012", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "composed primarily of" + "type" : "CLASS", + "lbl" : "obsolete absolute age" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002403", + "id" : "http://purl.obolibrary.org/obo/PATO_0001358", "meta" : { "definition" : { - "val" : "Affecting all regions without specificity of distribution.", - "xrefs" : [ "PATOC:MPTH" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's having a knob or knoblike protuberance.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "generalised", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "umbonate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000026", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:41:37Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "generalized" + "lbl" : "obsolete carbohydrate composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000224", + "id" : "http://purl.obolibrary.org/obo/PATO_0001359", "meta" : { + "definition" : { + "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having many wrinkles or creases on the surface.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete motor function" + "lbl" : "rugose" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001557", + "id" : "http://purl.obolibrary.org/obo/PATO_0000025", "meta" : { + "definition" : { + "val" : "A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "structure, composition", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "content", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "compositionality", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "composed of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0002000" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0002015" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "For example calcium composition (which may inhere in bone), haemoglobin composition (which may inhere in blood)." } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002404", + "id" : "http://purl.obolibrary.org/obo/PATO_0001356", "meta" : { "definition" : { - "val" : "Affecting a segment or segments.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "A shape quality inhering in a cell by virtue of the bearer's ability to take on two or more different shapes during its life cycle.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:43:13Z" } ] }, "type" : "CLASS", - "lbl" : "segmental" + "lbl" : "pleomorphic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000223", + "id" : "http://purl.obolibrary.org/obo/PATO_0000028", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -29862,152 +30873,110 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete muscle strength" + "lbl" : "obsolete macromolecular composition" }, { - "id" : "http://purl.obolibrary.org/obo/pato#abnormal_slim", + "id" : "http://purl.obolibrary.org/obo/PATO_0000027", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Abnormal/normal slim" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "PROPERTY" + "type" : "CLASS", + "lbl" : "obsolete electrolyte composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002401", + "id" : "http://purl.obolibrary.org/obo/PATO_0001357", "meta" : { "definition" : { - "val" : "characterised by an unidentifiable pattern.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped like a cushion or has a marked convex cushion-like form.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:37:55Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "random pattern" + "lbl" : "pulvinate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000226", + "id" : "http://purl.obolibrary.org/obo/PATO_0000029", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete tactile response" + "lbl" : "obsolete protein composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001554", + "id" : "http://purl.obolibrary.org/obo/PATO_0001350", "meta" : { "definition" : { - "val" : "A sensitivity of a process to oxygen which is lower than normal or average.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A physical quality inhering in a bearer by virtue of the rate of change of the bearer's angular velocity.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Angular_acceleration" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low sensitivity of occurrent to oxygen", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001553" } ] }, "type" : "CLASS", - "lbl" : "decreased sensitivity of a process to oxygen" + "lbl" : "angular acceleration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002402", + "id" : "http://purl.obolibrary.org/obo/PATO_0001351", "meta" : { "definition" : { - "val" : "Multiple lesions some interconnecting with each other.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given area.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Area_density" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:40:18Z" } ] }, "type" : "CLASS", - "lbl" : "multifocal to coalescing" + "lbl" : "area density" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000225", + "id" : "http://purl.obolibrary.org/obo/PATO_0000020", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000014" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "obsolete sensory function" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001555", + "id" : "http://purl.obolibrary.org/obo/PATO_0001354", "meta" : { "definition" : { - "val" : "The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A optical quality inhering in a bearer by virtue of the bearer's exhibiting low opacity.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "xrefs" : [ { - "val" : "OBO_REL:has_part" - } ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "cardinality", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "mereological quality", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "number of", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "number", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "has or lacks parts of type", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "extra or missing physical or functional parts", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "has number of" + "lbl" : "translucent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000228", + "id" : "http://purl.obolibrary.org/obo/PATO_0000022", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -30018,100 +30987,88 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete auditory" + "lbl" : "obsolete gametophytic compatability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002407", + "id" : "http://purl.obolibrary.org/obo/PATO_0000021", "meta" : { "definition" : { - "val" : "Having become firm or hard especially by increase of fibrous elements.", - "xrefs" : [ "mw:http://www.merriam-webster.com/dictionary/indurated" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to harmonious coexistence.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:49:11Z" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Needs redefined or obsoleted. Is this the same as genetic incompatibility? Moved to organismal quality." } ] }, "type" : "CLASS", - "lbl" : "indurated" + "lbl" : "compatibility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000227", + "id" : "http://purl.obolibrary.org/obo/PATO_0001355", "meta" : { + "definition" : { + "val" : "A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001857" } ] }, "type" : "CLASS", - "lbl" : "obsolete motor performance" + "lbl" : "convex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002408", + "id" : "http://purl.obolibrary.org/obo/PATO_0000024", "meta" : { - "definition" : { - "val" : "Having the consistency of water.", - "xrefs" : [ "PATOC:MPATH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:51:32Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "watery" + "lbl" : "obsolete sporophytic compatability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001558", + "id" : "http://purl.obolibrary.org/obo/PATO_0001352", "meta" : { "definition" : { - "val" : "A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A density quality which is equal to the mass exerting an influence on a one-dimensional object.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Linear_density" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "lacking processual parts" + "lbl" : "linear density" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002405", + "id" : "http://purl.obolibrary.org/obo/PATO_0001353", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's disposition to be reduced to smaller pieces with little effort.", - "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Friability" ] + "val" : "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given volume.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Mass_density" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:47:16Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "friability" + "lbl" : "volumetric density" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000229", + "id" : "http://purl.obolibrary.org/obo/PATO_0000023", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -30122,18 +31079,18 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete olfactory" + "lbl" : "obsolete relative compatability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001559", + "id" : "http://purl.obolibrary.org/obo/PATO_0000037", "meta" : { "definition" : { - "val" : "A functionality quality which is held by the bearer when the latter is able to perform additional or different function(s).", - "xrefs" : [ "PATO:MAH" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's density, firmness, or viscosity.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "having supernumerary functions", + "pred" : "hasRelatedSynonym", + "val" : "firmness", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -30142,259 +31099,188 @@ } ] }, "type" : "CLASS", - "lbl" : "having extra function" + "lbl" : "consistency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002406", + "id" : "http://purl.obolibrary.org/obo/RO_0002264", "meta" : { "definition" : { - "val" : "Easily reduced to powder or easily fragmentable or crumbly.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "c acts upstream of or within p if c is enables 'p' and p' causally upstream of or within p", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:48:30Z" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within" } ] }, - "type" : "CLASS", - "lbl" : "friable" + "type" : "PROPERTY", + "lbl" : "acts upstream of or within" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001552", + "id" : "http://purl.obolibrary.org/obo/PATO_0001369", "meta" : { "definition" : { - "val" : "A sensitivity of a process which is lower than normal or average.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A shape quality inhering in a colony by virtue of the bearer's appearing above the medium surface with terraced edges.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low sensitivity of occurrent", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "decreased sensitivity of occurrent", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001551" } ] }, "type" : "CLASS", - "lbl" : "decreased sensitivity of a process" + "lbl" : "raised" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000220", + "id" : "http://purl.obolibrary.org/obo/PATO_0000036", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete regeneration" + "lbl" : "obsolete water content" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002400", + "id" : "http://purl.obolibrary.org/obo/PATO_0000039", "meta" : { "definition" : { - "val" : "Having a spindle-like shape that is wide in the middle and tapers at both ends.", - "xrefs" : [ "wikipedia:wikipedia" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's orientation in space.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-07T05:43:25Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: consider merging with angular placement." } ] }, "type" : "CLASS", - "lbl" : "fusiform" + "lbl" : "direction" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001553", + "id" : "http://purl.obolibrary.org/obo/PATO_0001367", "meta" : { "definition" : { - "val" : "A sensitivity of occurrent to oxygen which is higher than normal or average.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high sensitivity of occurrent to oxygen", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001554" } ] }, "type" : "CLASS", - "lbl" : "increased sensitivity of a process to oxygen" + "lbl" : "lobate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000222", + "id" : "http://purl.obolibrary.org/obo/PATO_0000038", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete muscle elevation" + "lbl" : "obsolete gel consistency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001550", + "id" : "http://purl.obolibrary.org/obo/PATO_0001368", "meta" : { "definition" : { - "val" : "A sensitivity toward an external stimulus which is lower than normal/average.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having an irregularly toothed edge.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low sensitivity toward", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "decreased sensitivity", + "pred" : "hasRelatedSynonym", + "val" : "jagged", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001549" } ] }, "type" : "CLASS", - "lbl" : "decreased sensitivity toward" + "lbl" : "erose" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000221", + "id" : "http://purl.obolibrary.org/obo/RO_0002263", "meta" : { + "definition" : { + "val" : "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." } ] }, - "type" : "CLASS", - "lbl" : "obsolete urination" + "type" : "PROPERTY", + "lbl" : "acts upstream of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001551", + "id" : "http://purl.obolibrary.org/obo/PATO_0001361", "meta" : { "definition" : { - "val" : "A sensitivity of a process which is higher than normal or average.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A texture quality inhering in a bearer by virtue of the bearer's being covered with warts or projections that resemble warts resulting in a hard rough surface.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high sensitivity of occurrent", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "increased sensitivity of occurrent", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001552" } ] }, "type" : "CLASS", - "lbl" : "increased sensitivity of a process" + "lbl" : "warty" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0005488", + "id" : "http://purl.obolibrary.org/obo/PATO_0001362", "meta" : { "definition" : { - "val" : "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.", - "xrefs" : [ "GOC:ceb", "GOC:mah", "ISBN:0198506732" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], - "xrefs" : [ { - "val" : "Wikipedia:Binding_(molecular)" - } ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "ligand", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "molecular_function" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001716" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children." - } ] - }, - "type" : "CLASS", - "lbl" : "binding" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002414", - "meta" : { - "definition" : { - "val" : "A quality of duration having progressive course of indefinite duration with active, acute-like elements.", - "xrefs" : [ "PATOC:MPATH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:59:58Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "chronic-active" + "lbl" : "fragile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001567", + "id" : "http://purl.obolibrary.org/obo/PATO_0000031", "meta" : { - "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001566" } ] }, "type" : "CLASS", - "lbl" : "undistributed" + "lbl" : "obsolete metabolite composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000235", + "id" : "http://purl.obolibrary.org/obo/PATO_0000030", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -30405,183 +31291,137 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete odor_acuity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001568", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001624" - } ] - }, - "type" : "CLASS" + "lbl" : "obsolete enzyme composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002415", + "id" : "http://purl.obolibrary.org/obo/PATO_0001360", "meta" : { "definition" : { - "val" : "Single lesion with expansion into surrounding tissue.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having thin filamentous extensions at its edge.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T11:01:31Z" } ] }, "type" : "CLASS", - "lbl" : "focally extensive" + "lbl" : "filamentous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000234", + "id" : "http://purl.obolibrary.org/obo/PATO_0000033", "meta" : { + "definition" : { + "val" : "A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/concentration" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "concentration", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete visual" + "lbl" : "concentration of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002412", + "id" : "http://purl.obolibrary.org/obo/PATO_0001365", "meta" : { "definition" : { - "val" : "A color consisting of yellow and brown hue and low brightness.", + "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having spines, thorns or similar thin projections on its surface.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:56:22Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dark yellow brown" + "lbl" : "spiny" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002464", + "id" : "http://purl.obolibrary.org/obo/RO_0002258", "meta" : { + "definition" : { + "val" : "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002258" + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." - } ] - }, - "type" : "PROPERTY", - "lbl" : "helper property (not for use in curation)" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001565", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "developmentally_preceded_by" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000060" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - } ] - }, - "type" : "CLASS" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000237", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "In general you should not use this relation to make assertions - use one of the more specific relations below this one" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute odor_acuity" + "type" : "PROPERTY", + "lbl" : "developmentally preceded by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001566", + "id" : "http://purl.obolibrary.org/obo/PATO_0001366", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being small and resembling a point.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "diffuse", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "scattered", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001567" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001513" } ] }, "type" : "CLASS", - "lbl" : "distributed" + "lbl" : "punctiform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002413", + "id" : "http://purl.obolibrary.org/obo/PATO_0000032", "meta" : { - "definition" : { - "val" : "A color consisting of yellow and brown hue and high brightness.", - "xrefs" : [ "PATOC:GVG" ] - }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:57:27Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "light yellow brown" + "lbl" : "obsolete secondary product composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000236", + "id" : "http://purl.obolibrary.org/obo/PATO_0001363", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000404" } ] }, - "type" : "CLASS", - "lbl" : "obsolete odor type" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000239", + "id" : "http://purl.obolibrary.org/obo/PATO_0000035", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -30592,30 +31432,28 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete blinking reflex" + "lbl" : "obsolete carbohydrate concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002418", + "id" : "http://purl.obolibrary.org/obo/RO_0002259", + "type" : "PROPERTY", + "lbl" : "defined by inverse" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001364", "meta" : { "definition" : { - "val" : "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for acidic dyes under specific ph conditions.", + "val" : "A quality inhering in a bearer by virtue of the bearer's having root like extensions radiating from its center.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T03:01:19Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "acidophilic" + "lbl" : "rhizoidal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000238", + "id" : "http://purl.obolibrary.org/obo/PATO_0000034", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -30626,876 +31464,928 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative odor_acuity" + "lbl" : "obsolete protein concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002419", + "id" : "http://purl.obolibrary.org/obo/PATO_0002629", "meta" : { "definition" : { - "val" : "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for eosin dye.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An intensity which is characterized by being very severe.", + "xrefs" : [ "PATO:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T03:02:09Z" + "val" : "2014-05-26T06:44:11Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "eosinophilic" + "lbl" : "profound intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002416", + "id" : "http://www.geneontology.org/formats/oboInOwl#hasSynonymType", + "type" : "PROPERTY", + "lbl" : "has_synonym_type" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002254", "meta" : { "definition" : { - "val" : "Flattened from above downward; below the normal level or the level of the surrounding parts.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "x has developmental contribution from y iff x has some part z such that z develops from y", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "xrefs" : [ { + "val" : "RO:0002254" + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T12:06:55Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_developmental_contribution_from" } ] }, - "type" : "CLASS", - "lbl" : "sunken" + "type" : "PROPERTY", + "lbl" : "has developmental contribution from" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001569", + "id" : "http://purl.obolibrary.org/obo/go#goslim_pombe", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0002001" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Fission yeast GO slim" } ] }, - "type" : "CLASS" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002417", + "id" : "http://purl.obolibrary.org/obo/RO_0002255", "meta" : { "definition" : { - "val" : "Extending through or affecting the entire thickness of the wall of an organ or cavity or boundary.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "inverse of has developmental contribution from", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "xrefs" : [ { + "val" : "RO:0002255" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "developmentally_contributes_to" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T02:16:18Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" } ] }, - "type" : "CLASS", - "lbl" : "transmural" + "type" : "PROPERTY", + "lbl" : "developmentally_contributes_to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001560", + "id" : "http://purl.obolibrary.org/obo/PATO_0002628", "meta" : { + "definition" : { + "val" : "An intensity which is borderline in it its effect or force as compared to baseline or normal.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0002002" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-05-26T06:42:21Z" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "borderline intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001563", + "id" : "http://purl.obolibrary.org/obo/PATO_0001309", "meta" : { "definition" : { - "val" : "A mass which is higher than normal or average.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point.", + "xrefs" : [ "PATOC:mellybelly" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high mass", + "pred" : "hasRelatedSynonym", + "val" : "time", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "large mass", + "val" : "period", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000081" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001562" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000578" } ] }, "type" : "CLASS", - "lbl" : "increased mass" + "lbl" : "duration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000231", + "id" : "http://purl.obolibrary.org/obo/PATO_0001303", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing.", + "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "variability of a physical quality", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete reflex" + "lbl" : "variability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002410", + "id" : "http://purl.obolibrary.org/obo/PATO_0001304", "meta" : { "definition" : { - "val" : "A colour that is very pale yellowish brown.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:54:55Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "beige" + "lbl" : "variability of temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002411", + "id" : "http://purl.obolibrary.org/obo/PATO_0002632", "meta" : { "definition" : { - "val" : "A color consisting of yellow and brown hue.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality in which the effect or outcome is not primary or the focus of the observation.", + "xrefs" : [ "PATO:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "haendel" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:55:51Z" + "val" : "2014-05-26T13:17:45Z" } ] }, "type" : "CLASS", - "lbl" : "yellow brown" + "lbl" : "secondary" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001564", + "id" : "http://purl.obolibrary.org/obo/PATO_0001301", "meta" : { "definition" : { - "val" : "A quality of a process inhering in a bearer by virtue of the bearer's processual parts.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An optical quality that is the mixture, purity or pattern of wavelengths of light perceived by the observer.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "extra or missing processual parts" + "lbl" : "chromatic property" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000230", + "id" : "http://purl.obolibrary.org/obo/PATO_0001302", "meta" : { + "definition" : { + "val" : "A color consisting of red and orange hue with a slight amount of gray.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - 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"lbl" : "having extra processual parts" + "lbl" : "increased variability of temperature" }, { - "id" : "http://purl.obolibrary.org/obo/pato#is_measurement_of", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "pato.ontology" - } ] - }, - "type" : "PROPERTY", - "lbl" : "is_measurement_of" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000232", + "id" : "http://purl.obolibrary.org/obo/PATO_0001305", "meta" : { + "definition" : { + "val" : "A temperature which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hot", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "high temperature", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001306" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000678" } ] }, "type" : "CLASS", - "lbl" : "obsolete taste" + "lbl" : "increased temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001562", + "id" : "http://purl.obolibrary.org/obo/PATO_0001306", "meta" : { "definition" : { - "val" : "A mass which is lower than normal or average.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A temperature which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low mass", + "val" : "cold", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "small mass", + "val" : "low temperature", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000677" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000579" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001563" + "val" : "http://purl.obolibrary.org/obo/PATO_0001305" } ] }, "type" : "CLASS", - "lbl" : "decreased mass" - }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0001010", - "type" : "CLASS", - "lbl" : "organism or virus or viroid" + "lbl" : "decreased temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000649", + "id" : "http://purl.obolibrary.org/obo/PATO_0002630", "meta" : { + "definition" : { + "val" : "An occurrence quality inhering in a bearer by virtue of the bearer's having a course that occurs occasionally.", + "xrefs" : [ "PATO:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0002112" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-05-26T06:50:16Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "episodic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000642", + "id" : "http://purl.obolibrary.org/obo/PATO_0002631", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An occurrence of a process during which time there is an inability to change the course, extent, or repetition of the process.", + "xrefs" : [ "PATO:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "merged with", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "fused to", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "fused", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "joined with", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "coalesced", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000651" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-05-26T13:09:29Z" } ] }, "type" : "CLASS", - "lbl" : "fused with" + "lbl" : "refractory" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001974", + "id" : "http://purl.obolibrary.org/obo/PATO_0001300", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's terminating in a round end, the centre of which is depressed.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "retuse" + "lbl" : "optical quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000641", + "id" : "http://purl.obolibrary.org/obo/PATO_0001314", "meta" : { + "definition" : { + "val" : "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature.", + "xrefs" : [ "PATO:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001313" } ] }, "type" : "CLASS", - "lbl" : "obsolete deposition defective" + "lbl" : "variant temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001975", + "id" : "http://purl.obolibrary.org/obo/PATO_0001315", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "A temperature which is increased by a low degree.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - 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"xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "overdeveloped", + "val" : "high duration of temperature", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000943" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000645" + "val" : "http://purl.obolibrary.org/obo/PATO_0001311" } ] }, "type" : "CLASS", - "lbl" : "hyperplastic" + "lbl" : "increased duration of temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001972", + "id" : "http://purl.obolibrary.org/obo/RO_0002233", "meta" : { "definition" : { - "val" : "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches branching into a reticulum toward the margin.", - "xrefs" : [ "Hickey:1988" ] + "val" : "p has direct input c iff c is a participant in p, c is present at the start of p, and the state of c is modified during p.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "consumes" } ] }, - "type" : "CLASS", - "lbl" : "reticulodromous" + "type" : "PROPERTY", + "lbl" : "has input" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000643", + "id" : "http://purl.obolibrary.org/obo/PATO_0001313", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it.", - "xrefs" : [ "spinalstenosis:spinalstenosis" ] + "val" : "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001314" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "herniated" + "lbl" : "invariant temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001973", + "id" : "http://purl.obolibrary.org/obo/RO_0002234", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being tapering gradually into a rigid point.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - 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"synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "incised", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001319" } ] }, "type" : "CLASS", - "lbl" : "cut" + "lbl" : "indiscriminate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000646", + "id" : "http://purl.obolibrary.org/obo/PATO_0001319", "meta" : { "definition" : { - "val" : "A morphological quality inhering in a bearer by virtue of the bearer's being distorted during formation.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "malformation", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001318" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "malformed" + "lbl" : "discriminate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001979", + "id" : "http://purl.obolibrary.org/obo/PATO_0001316", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being partly divided into a determinate number of regions.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "A temperature which is increased by a medium degree.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "lobed" + "lbl" : "moderate increased temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000645", + "id" : "http://purl.obolibrary.org/obo/PATO_0001317", "meta" : { "definition" : { - "val" : "A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue.", + "val" : "A temperature which is increased by a high degree.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "underdeveloped", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "hypoplasia", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000644" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000942" } ] }, "type" : "CLASS", - "lbl" : "hypoplastic" + "lbl" : "severe increased temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001976", + "id" : "http://purl.obolibrary.org/obo/PATO_0001310", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having or lacking sharp straight-edged teeth pointing to the apex.", + "val" : "A duration quality of a process inhering in a bearer by virtue of the bearer's duration of exhibition of thermal energy.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: obsolete? I don't know what this means." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "serration" + "lbl" : "duration of temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000648", + "id" : "http://purl.obolibrary.org/obo/PATO_0001311", "meta" : { "definition" : { - "val" : "A morphological quality inhering in a bearer by virtue of the bearer's being blocked or filled with obstacles or an obstacle.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A duration of temperature which is lesser relative to the normal or average enduring or continuing in time.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001312" } ] }, "type" : "CLASS", - "lbl" : "obstructed" + "lbl" : "decreased duration of temperature" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002450", + "id" : "http://purl.obolibrary.org/obo/PATO_0001325", "meta" : { "definition" : { - "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.", - "xrefs" : [ ] + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's having equal proportion around a central point or axis.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "molecularly increases activity of", - "xrefs" : [ ] + "val" : "centric", + "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0002-2908-3327" ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "activates" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "activity directly positively regulates activity of" + "type" : "CLASS", + "lbl" : "radial symmetry" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001977", + "id" : "http://purl.obolibrary.org/obo/PATO_0001326", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having at least one salient angle on the margin.", - "xrefs" : [ "PATOC:GVG" ] - }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "angulate", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "angular" + "lbl" : "obsolete left-right symmetry" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000647", + "id" : "http://purl.obolibrary.org/obo/PATO_0001323", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's undergoing unprogrammed cell death.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Necrotic" ] + "val" : "A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Area" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "necrotic" + "lbl" : "area" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002448", + "id" : "http://purl.obolibrary.org/obo/RO_0002222", "meta" : { - "definition" : { - "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.", - "xrefs" : [ ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "molecularly controls", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1" + }, { + "pred" : "http://purl.org/dc/terms/source", + "val" : "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "PROPERTY", - "lbl" : "activity directly regulates activity of" + "lbl" : "temporally related to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002449", + "id" : "http://purl.obolibrary.org/obo/PATO_0001324", "meta" : { "definition" : { - "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.", - "xrefs" : [ ] + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being symmetric about a plane running from its frontal end to its caudal end (head to tail), and has nearly identical right and left halves.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Bilateral_symmetry" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "molecularly decreases activity of", + "val" : "left-right symmetry", "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "pennate", + "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0002-2908-3327" ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "inhibits" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "activity directly negatively regulates activity of" + "type" : "CLASS", + "lbl" : "bilateral symmetry" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001970", + "id" : "http://purl.obolibrary.org/obo/PATO_0001329", "meta" : { "definition" : { - "val" : "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches joined together in a series of prominent arches.", - "xrefs" : [ "Hickey:1988" ] + "val" : "A flavor quality inhering in a bearer by virtue of the bearer's having flavour.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "brochidodromous" + "lbl" : "flavourful" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001971", + "id" : "http://purl.obolibrary.org/obo/PATO_0001327", "meta" : { "definition" : { - "val" : "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches freely branching toward the margin.", - "xrefs" : [ "Hickey:1988" ] + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by only one longitudinal plane passing through the axis.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cladodromous" + "lbl" : "zygomorphic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000640", + "id" : "http://purl.obolibrary.org/obo/PATO_0001328", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's exhibiting an alteration in size, shape or organization of its constituent cells.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by any longitudinal plane passing through the axis.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "dysplasia", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dysplastic" + "lbl" : "actinomorphic" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002447", + "id" : "http://purl.obolibrary.org/obo/RO_0002217", "meta" : { + "definition" : { + "val" : "x actively participates in y if and only if x participates in y and x realizes some active role", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Axiomatization to GO to be added later" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "agent in" } ] }, "type" : "PROPERTY", - "lbl" : "phosphorylates" + "lbl" : "actively participates in" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000116", + "id" : "http://purl.obolibrary.org/obo/RO_0002218", "meta" : { + "definition" : { + "val" : "x has participant y if and only if x realizes some active role that inheres in y", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This may be obsoleted and replaced by the original 'has agent' relation" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has agent" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'heart development' has active participant some Shh protein" } ] }, "type" : "PROPERTY", - "lbl" : "editor note" + "lbl" : "has active participant" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000117", + "id" : "http://purl.obolibrary.org/obo/RO_0002213", "meta" : { + "definition" : { + "val" : "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002213" + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" - } ] - }, - "type" : "PROPERTY", - "lbl" : "term editor" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000114", - "type" : "PROPERTY", - "lbl" : "has curation status" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000115", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" - } ] - }, - "type" : "PROPERTY", - "lbl" : "definition" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000112", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "positively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "positively_regulates" } ] }, "type" : "PROPERTY", - "lbl" : "example of usage" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000111", - "type" : "PROPERTY", - "lbl" : "editor preferred term" + "lbl" : "positively regulates" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001509", + "id" : "http://purl.obolibrary.org/obo/PATO_0001321", "meta" : { "definition" : { - "val" : "A quality of a single physical entity that arises by virtue of whether the bearer exhibits the ability to perform a regular function(s).", - "xrefs" : [ "PATOC:MAH" ] + "val" : "An angle which is 90 degrees to another entity.", + "xrefs" : [ "thesaurus.math:thesaurus.math" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "functionality" + "lbl" : "right angle to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001507", + "id" : "http://purl.obolibrary.org/obo/PATO_0001322", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's being interrupted of its normal course.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An angle which is 180 degrees to another entity.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: decide on correct parentage." } ] }, "type" : "CLASS", - "lbl" : "disrupted" + "lbl" : "straight angle to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001508", + "id" : "http://purl.obolibrary.org/obo/RO_0002215", "meta" : { + "definition" : { + "val" : "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. ", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "xrefs" : [ { + "val" : "RO:0002215" + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000297" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/21208450" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000118", - "meta" : { - "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has function realized in" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "capable_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "osteoclast SubClassOf 'capable of' some 'bone resorption'" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "RO_0000053 some (RO_0000054 only ?Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20123131" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "alternative term" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000119", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" - } ] - }, - "type" : "PROPERTY", - "lbl" : "definition source" + "lbl" : "capable of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001985", + "id" : "http://purl.obolibrary.org/obo/PATO_0001320", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being kept below its freezing point.", - "xrefs" : [ "OBI:OBI" ] + "val" : "A pilosity quality of being covered with short hairs or soft down.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -31504,45 +32394,57 @@ } ] }, "type" : "CLASS", - "lbl" : "frozen" + "lbl" : "pubescent hair" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001501", + "id" : "http://purl.obolibrary.org/obo/RO_0002216", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development.", - "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "underdeveloped", + "val" : "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.", "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002216" } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001701" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has function in" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "capable_of_part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" } ] }, - "type" : "CLASS", - "lbl" : "immature" + "type" : "PROPERTY", + "lbl" : "capable of part of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000653", + "id" : "http://purl.obolibrary.org/obo/PATO_0000884", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete addictive substance value" + "lbl" : "obsolete hybrid fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000652", + "id" : "http://purl.obolibrary.org/obo/PATO_0000883", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -31553,166 +32455,261 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete substance value" + "lbl" : "obsolete female fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001986", + "id" : "http://purl.obolibrary.org/obo/RO_0002211", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's passing into solution.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "xrefs" : [ { + "val" : "RO:0002211" + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "false" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "external" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Tanya Berardini" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Hill" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Regulation precludes parthood; the regulatory process may not be within the regulated process." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GO" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "regulates (processual)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "regulates" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "dissolved" + "type" : "PROPERTY", + "lbl" : "regulates" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001502", + "id" : "http://purl.obolibrary.org/obo/PATO_0000886", "meta" : { - "definition" : { - "val" : "A monadic quality of continuant inhering in a bearer by virtue of the bearer's being intricate and compounded.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "TODO: obsolete this." + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "complexity" + "lbl" : "obsolete absolute litter size value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000655", + "id" : "http://purl.obolibrary.org/obo/RO_0002212", "meta" : { + "definition" : { + "val" : "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002212" + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "external" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "negatively_regulates" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "negatively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "negatively regulates" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000885", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete amphetamine value" + "lbl" : "obsolete male fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001983", + "id" : "http://purl.obolibrary.org/obo/PATO_0000888", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's two basal lobes being united together.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000892" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "perfoliate" + "lbl" : "female fertile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000654", + "id" : "http://purl.obolibrary.org/obo/PATO_0000887", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete alcochol value" + "lbl" : "obsolete relative litter size value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001500", + "id" : "http://purl.obolibrary.org/obo/PATO_0000889", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being gradually narrower or thinner toward one end.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "taper", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "tapered" + "lbl" : "obsolete cytoplasmic male sterility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001984", + "id" : "http://purl.obolibrary.org/obo/RO_0002202", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being prolonged below the point of insertion.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "xrefs" : [ { + "val" : "RO:0002202" + } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This is the transitive form of the develops from relation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "develops_from" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" } ] }, - "type" : "CLASS", - "lbl" : "decurrent" + "type" : "PROPERTY", + "lbl" : "develops from" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001989", + "id" : "http://purl.obolibrary.org/obo/PATO_0000880", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's having many curves and turns.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "twisted", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "sinuous" + "lbl" : "obsolete fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001505", + "id" : "http://purl.obolibrary.org/obo/RO_0002203", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's not being in contact with another entity, or of no longer being connected or joined with another entity.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "divided_from", + "val" : "inverse of develops from", "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "xrefs" : [ { + "val" : "RO:0002203" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "develops_into" }, { - "pred" : "hasRelatedSynonym", - "val" : "discontiguous", - "xrefs" : [ ] + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "hasRelatedSynonym", - "val" : "splitted from", - "xrefs" : [ ] - } ], + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" + } ] + }, + "type" : "PROPERTY", + "lbl" : "develops into" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000882", + "meta" : { "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "separated from" + "lbl" : "obsolete litter size value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000657", + "id" : "http://purl.obolibrary.org/obo/PATO_0000881", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -31723,24 +32720,26 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete length_quantity" + "lbl" : "obsolete gestational period value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001506", + "id" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's separation of normally joined parts, such as the separation of adjacent bones without fracture or of certain abdominal muscles during pregnancy.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "diastatic" + "type" : "PROPERTY", + "lbl" : "reciprocal_of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000656", + "id" : "http://purl.obolibrary.org/obo/PATO_0000895", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -31751,9 +32750,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete time_quantity" + "lbl" : "obsolete f1 fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000659", + "id" : "http://purl.obolibrary.org/obo/PATO_0000894", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -31764,299 +32763,237 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete temparature_quantity" + "lbl" : "obsolete cytoplasmic sterility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001503", + "id" : "http://purl.obolibrary.org/obo/PATO_0000897", "meta" : { - "definition" : { - "val" : "A complexity quality in a bearer by virtue of the bearer's having few parts or being complicated or compound.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "simple" + "lbl" : "obsolete germ line dependent fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001987", + "id" : "http://purl.obolibrary.org/obo/PATO_0000896", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's having a three dimensional cavity with a narrow or no opening, and often containing an anatomical substance.", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "sacular", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "saccular" + "lbl" : "obsolete f2 fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001504", + "id" : "http://purl.obolibrary.org/obo/PATO_0000899", "meta" : { - "definition" : { - "val" : "A complexity quality inhering in a bearer by virtue of the bearer's being intricate and compounded.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "complex" + "lbl" : "obsolete soma dependent fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000658", + "id" : "http://purl.obolibrary.org/obo/PATO_0000898", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete metamphetamine value" + "lbl" : "obsolete intercross fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001988", + "id" : "http://purl.obolibrary.org/obo/PATO_0000891", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having four angles and four sides.", - "xrefs" : [ "url:http://www.oed.com/" ] + "val" : "A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000890" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "quadrangular" + "lbl" : "male fertile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001981", + "id" : "http://purl.obolibrary.org/obo/PATO_0000890", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an ear.", - "xrefs" : [ "url:http://www.thefreedictionary.com/auriculate" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "auriculate" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002434", - "meta" : { - "definition" : { - "val" : "A relationship that holds between two entities in which the processes executed by the two entities are causally connected.", - "xrefs" : [ ] + "val" : "A male fertility quality inhering in a male by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "in pairwise interaction with", + "pred" : "hasRelatedSynonym", + "val" : "male infertile", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://purl.obolibrary.org/obo/MI_0914" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Considering relabeling as 'pairwise interacts with'" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." - }, { - "pred" : "http://xmlns.com/foaf/0.1/page", - "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000891" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "interacts with" + "type" : "CLASS", + "lbl" : "male sterile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001982", + "id" : "http://purl.obolibrary.org/obo/PATO_0000893", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's gradually tapering to a slender point.", - "xrefs" : [ "url:http://www.thefreedictionary.com/attenuate" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "attenuate" + "lbl" : "obsolete backcross fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000651", + "id" : "http://purl.obolibrary.org/obo/PATO_0000892", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity.", - "xrefs" : [ "PATOC:nw" ] + "val" : "A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "unfused", + "pred" : "hasRelatedSynonym", + "val" : "female infertile", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000642" + "val" : "http://purl.obolibrary.org/obo/PATO_0000888" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "unfused from" + "lbl" : "female sterile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001980", + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "type" : "PROPERTY", + "lbl" : "has_obo_namespace" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_40674", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having distinct parts arising from a common point or center.", - "xrefs" : [ "thefreedictionary:thefreedictionary" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "mammals", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "mammals", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "digitate" + "lbl" : "Mammalia" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002436", + "id" : "http://purl.obolibrary.org/obo/GO_0060089", "meta" : { "definition" : { - "val" : "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.", - "xrefs" : [ ] + "val" : "A compound molecular function in which an effector function is controlled by one or more regulatory components.", + "xrefs" : [ "GOC:dos", "GOC:pdt" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate", "http://purl.obolibrary.org/obo/go#goslim_pir" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "molecularly binds with" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://purl.obolibrary.org/obo/ECO_0000353" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://purl.obolibrary.org/obo/MI_0915" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "binds" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" } ] }, - "type" : "PROPERTY", - "lbl" : "molecularly interacts with" + "type" : "CLASS", + "lbl" : "molecular transducer activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000650", + "id" : "http://purl.obolibrary.org/obo/PATO_0000848", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000470" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete relative auditory acuity" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000125", + "id" : "http://purl.obolibrary.org/obo/PATO_0000847", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "INDIVIDUAL", - "lbl" : "pending final vetting" + "type" : "CLASS", + "lbl" : "obsolete absolute auditory acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001518", + "id" : "http://purl.obolibrary.org/obo/PATO_0000849", "meta" : { - "definition" : { - "val" : "An optical quality inhering in a bearer by virtue of the bearer's lacking focus.", - "xrefs" : [ "PATOC:NC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "blurry" + "lbl" : "obsolete absolute auditory ability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001519", + "id" : "http://purl.obolibrary.org/obo/PATO_0000840", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of vibration, as perceived by the sense of hearing.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sound_quality" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "sound quality" + "lbl" : "obsolete absolute auditory acuity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001512", + "id" : "http://purl.obolibrary.org/obo/PATO_0000842", "meta" : { - "definition" : { - "val" : "A pattern inhering in a surface by virtue of the bearer's being marked by the presence of dots, punctures, points or pits.", - "xrefs" : [ "medical-dictionary:medical-dictionary" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "stippled", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "spotted", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "dotted", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "punctate" + "lbl" : "obsolete absolute auditory threshold value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000664", + "id" : "http://purl.obolibrary.org/obo/PATO_0000841", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -32067,86 +33004,61 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete substance_quantity" + "lbl" : "obsolete relative auditory acuity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001996", + "id" : "http://purl.obolibrary.org/obo/PATO_0000844", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000462" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete auditory acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001997", + "id" : "http://purl.obolibrary.org/obo/PATO_0000843", "meta" : { - "definition" : { - "val" : "An amount which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "present in fewer numbers in organism", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "decreased", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "subnumerary", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "reduced", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "decreased number", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000468" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000470" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative auditory threshold value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000846", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000419" } ] }, "type" : "CLASS", - "lbl" : "decreased amount" + "lbl" : "obsolete auditory threshold" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002430", + "id" : "http://purl.obolibrary.org/obo/PATO_0000845", "meta" : { - "definition" : { - "val" : "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002428" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "involved in negative regulation of" + "type" : "CLASS", + "lbl" : "obsolete auditory ability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000663", + "id" : "http://purl.obolibrary.org/obo/PATO_0000859", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -32157,208 +33069,140 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete occurrent" + "lbl" : "obsolete pinna reflex value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001513", + "id" : "http://purl.obolibrary.org/obo/PATO_0000858", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001566" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete ocular reflex value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000666", + "id" : "http://purl.obolibrary.org/obo/PATO_0000851", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete energy_quantity" + "lbl" : "obsolete absolute auditory threshold" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002431", + "id" : "http://purl.obolibrary.org/obo/PATO_0000850", "meta" : { - "definition" : { - "val" : "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "involved in or reguates" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "OWL does not allow defining object properties via a Union" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "PROPERTY", - "lbl" : "involved in or involved in regulation of" + "type" : "CLASS", + "lbl" : "obsolete relative auditory ability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001510", + "id" : "http://purl.obolibrary.org/obo/PATO_0000853", "meta" : { - "definition" : { - "val" : "A functionality quality held by the bearer when the latter is able to perform a regular function(s).", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001511" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "functional" + "lbl" : "obsolete blinking reflex value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001994", + "id" : "http://purl.obolibrary.org/obo/PATO_0000852", "meta" : { - "definition" : { - "val" : "A cellularity quality inhering in a bearer by virtue of the bearer's consisting of exactly one cell.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "unicellular" + "lbl" : "obsolete relative auditory threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000665", + "id" : "http://purl.obolibrary.org/obo/PATO_0000855", "meta" : { - "definition" : { - "val" : "A color brightness which is relatively high.", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "light", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000327" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "high brightness" + "lbl" : "obsolete corneal reflex value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001511", + "id" : "http://purl.obolibrary.org/obo/PATO_0000854", "meta" : { - "definition" : { - "val" : "A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s).", - "xrefs" : [ "PATC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "defective", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "functional failure", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "disfunctional", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "failure", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001640" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - 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However, it is not clear if these terms should even remain in PATO." + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "conspicuousness" + "lbl" : "obsolete righting reflex value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001514", + "id" : "http://purl.obolibrary.org/obo/PATO_0000866", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer.", - "xrefs" : [ "PATOC:cjm" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "delaminated" + "lbl" : "obsolete suckling reflex value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001999", + "id" : "http://purl.obolibrary.org/obo/PATO_0000865", "meta" : { - "definition" : { - "val" : "The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. 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When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code \"no data\" (ND), is used to indicate this." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0044699" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "janelomax" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0007582" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0000004" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "biological_process" + "lbl" : "obsolete irritable" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002428", + "id" : "http://purl.obolibrary.org/obo/PATO_0000874", "meta" : { - "definition" : { - "val" : "c involved in regulation of p if c is involved in some p' and p' regulates some p", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "PROPERTY", - "lbl" : "involved in regulation of" + "type" : "CLASS", + "lbl" : "obsolete fearful" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002429", + "id" : "http://purl.obolibrary.org/obo/PATO_0000877", "meta" : { - "definition" : { - "val" : "c involved in regulation of p if c is involved in some p' and p' positively regulates some p", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002428" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "involved in positive regulation of" + "type" : "CLASS", + "lbl" : "obsolete absolute respiratory rate value" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0045937", + "id" : "http://purl.obolibrary.org/obo/PATO_0000876", "meta" : { - "definition" : { - "val" : "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates.", - "xrefs" : [ "GOC:go_curators" ] - }, - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "activation of phosphate metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "upregulation of phosphate metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "stimulation of phosphate metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "up-regulation of phosphate metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "positive regulation of phosphate metabolism", - "xrefs" : [ ] + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "hasExactSynonym", - "val" : "up regulation of phosphate metabolic process", - "xrefs" : [ ] - } ], + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete respiratory rate value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000879", + "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "positive regulation of phosphate metabolic process" + "lbl" : "obsolete fecundity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001992", + "id" : "http://purl.obolibrary.org/obo/PATO_0000878", "meta" : { - "definition" : { - "val" : "An organismal quality inhering in a bearer by virtue of the bearer's consisting cells.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cellularity" + "lbl" : "obsolete relative respiratory rate value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000660", + "id" : "http://purl.obolibrary.org/obo/PATO_0000871", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -32742,24 +33466,33 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete angle_quantity" + "lbl" : "obsolete aggressive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001993", + "id" : "http://purl.obolibrary.org/obo/PATO_0000870", "meta" : { - "definition" : { - "val" : "A cellularity quality inhering in a bearer by virtue of the bearer's consisting of more than one cell.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "multicellular" + "lbl" : "obsolete relative neurobehavioral function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000662", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_1437010", + "meta" : { + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "Boreotheria", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Boreoeutheria" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000804", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -32770,41 +33503,60 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete volume_quantity" + "lbl" : "obsolete motor performance value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001990", + "id" : "http://purl.obolibrary.org/obo/PATO_0040023", "meta" : { "definition" : { - "val" : "A duration quality of a process inhering in a disease by virtue of the bearer's duration of an impairment of health or of a condition of abnormal functioning.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body.", + "xrefs" : [ "https://en.wiktionary.org/wiki/distomedial" ] }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "distomedial", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "disto-medial orientation", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "MAH: I think this term should be obsoleted. Is it used?" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-19T21:54:33Z" } ] }, "type" : "CLASS", - "lbl" : "duration of disease" + "lbl" : "distomedial orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001991", + "id" : "http://purl.obolibrary.org/obo/PATO_0040024", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to being capable of indefinite growth or division.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "paired", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "immortal" + "lbl" : "bilaterally paired" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000661", + "id" : "http://purl.obolibrary.org/obo/PATO_0000803", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -32815,69 +33567,72 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete solid substance value" + "lbl" : "obsolete tactile response value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001529", + "id" : "http://purl.obolibrary.org/obo/PATO_0000806", "meta" : { - "definition" : { - "val" : "A spatiotemporal quality inhering in a cell.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "cellular spatiotemporal quality" + "lbl" : "obsolete olfactory value" }, { - "id" : "http://purl.obolibrary.org/obo/pato#has_cross_section", + "id" : "http://purl.obolibrary.org/obo/PATO_0040021", "meta" : { "definition" : { - "val" : "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism..", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round." + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "has_cross_section" + "type" : "CLASS", + "lbl" : "unpaired" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001523", + "id" : "http://purl.obolibrary.org/obo/PATO_0000805", "meta" : { - "definition" : { - "val" : "A physical quality which is equal to the quotient of the speed of a sound wave divided by its wavelength.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sound_wavelength" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sound wavelength" + "lbl" : "obsolete auditory value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000675", + "id" : "http://purl.obolibrary.org/obo/PATO_0040022", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-19T21:49:07Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete body temperature value" + "lbl" : "flared" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000674", + "id" : "http://purl.obolibrary.org/obo/PATO_0000808", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -32888,74 +33643,77 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute temperature value" + "lbl" : "obsolete reflex value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001524", + "id" : "http://purl.obolibrary.org/obo/PATO_0000807", "meta" : { - "definition" : { - "val" : "A sound frequency in the range of 0-20 Hz.", - "xrefs" : [ "studyphysics:studyphysics" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "intrasonic" + "lbl" : "obsolete proprioreception value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000677", + "id" : "http://purl.obolibrary.org/obo/PATO_0040025", "meta" : { + "definition" : { + "val" : "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present.", + "xrefs" : [ "NCIT:C3824" ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001306" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "lesioned" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001521", + "id" : "http://purl.obolibrary.org/obo/PATO_0040026", "meta" : { "definition" : { - "val" : "A physical quality inhering in a sound wave by virtue of the maximum magnitude (value without regard to sign) of its disturbance.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being marked by interruptions or gaps.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { - "pred" : "hasBroadSynonym", - "val" : "loudness", + "pred" : "hasExactSynonym", + "val" : "structurally interrupted", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is intended for use for terms such as MP:0010461 discontinuous pulmonary artery and MP:0004157 interrupted aortic arch." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sound amplitude" + "lbl" : "structurally discontinuous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001522", + "id" : "http://purl.obolibrary.org/obo/PATO_0000809", "meta" : { - "definition" : { - "val" : "A physical quality inhering in sound by virtue of the bearer's travelling speed in a given medium under specified conditions.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sound_speed" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sound speed" + "lbl" : "obsolete taste value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000676", + "id" : "http://purl.obolibrary.org/obo/PATO_0000800", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -32966,122 +33724,109 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative temperature value" + "lbl" : "obsolete muscle strength value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000679", + "id" : "http://purl.obolibrary.org/obo/PATO_0000802", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete temporal value" + "lbl" : "obsolete sensory function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001527", + "id" : "http://purl.obolibrary.org/obo/PATO_0000801", "meta" : { - "definition" : { - "val" : "A sound amplitude which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "quiet" + "lbl" : "obsolete motor function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000678", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001528", + "id" : "http://purl.obolibrary.org/obo/GO_0016740", "meta" : { "definition" : { - "val" : "A sound amplitude which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.", + "xrefs" : [ "ISBN:0198506732" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], + "xrefs" : [ { + "val" : "Reactome:R-HSA-1483089" + }, { + "val" : "Reactome:R-HSA-1483186" + }, { + "val" : "Reactome:R-HSA-5668414" + }, { + "val" : "Reactome:R-HSA-8868783" + }, { + "val" : "Reactome:R-HSA-6787403" + }, { + "val" : "EC:2" + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "molecular_function" } ] }, "type" : "CLASS", - "lbl" : "loud" + "lbl" : "transferase activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001525", + "id" : "http://purl.obolibrary.org/obo/PATO_0040020", "meta" : { "definition" : { - "val" : "A sound frequency in the range of 20 to 20.000 Hz.", - "xrefs" : [ "url:http://www.studyphysics.ca/" ] + "val" : "Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-16T22:52:49Z" } ] }, "type" : "CLASS", - "lbl" : "sonic" + "lbl" : "spayed female" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001526", + "id" : "http://purl.obolibrary.org/obo/PATO_0000815", "meta" : { - "definition" : { - "val" : "A sound frequency in the range of 20 000 + Hz.", - "xrefs" : [ "studyphysics:studyphysics" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "ultrasonic" + "lbl" : "obsolete absolute odor acuity value" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002418", + "id" : "http://purl.obolibrary.org/obo/PATO_0000814", "meta" : { - "definition" : { - "val" : "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; 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In addition, the output of p must be an input of q.", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002575", - "val" : "http://purl.obolibrary.org/obo/RO_0002411" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "PROPERTY", - "lbl" : "immediately causally upstream of" + "type" : "CLASS", + "lbl" : "obsolete quantity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001520", + "id" : "http://purl.obolibrary.org/obo/PATO_0000818", "meta" : { - "definition" : { - "val" : "The frequency of transmitted vibrations.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "sound frequency" + "lbl" : "obsolete concentration_quantity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000670", + "id" : "http://purl.obolibrary.org/obo/PATO_0000811", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -33157,9 +33889,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete saccharin versus water value" + "lbl" : "obsolete visual value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000673", + "id" : "http://purl.obolibrary.org/obo/PATO_0000810", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -33170,9 +33902,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete temperature value" + "lbl" : "obsolete touch value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000672", + "id" : "http://purl.obolibrary.org/obo/PATO_0000813", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete odor type value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000812", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -33183,47 +33928,69 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete unit" + "lbl" : "obsolete odor acuity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001938", + "id" : "http://purl.obolibrary.org/obo/PATO_0040001", "meta" : { "definition" : { - "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's being oval and a little angular in the middle.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "Shaped like a ring", + "xrefs" : [ "https://orcid.org/0000-0002-6601-2165" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "annular", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-05-24T03:56:53Z" } ] }, "type" : "CLASS", - "lbl" : "rhomboid" + "lbl" : "ring-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000606", + "id" : "http://purl.obolibrary.org/obo/PATO_0000826", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute angle value" + "lbl" : "obsolete visual acuity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000605", + "id" : "http://purl.obolibrary.org/obo/PATO_0040002", "meta" : { - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "position", + "definition" : { + "val" : "A positional quality inhering in a bearer by virtue of some aspect of that bearer beginning from a position on another entity.", "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-05-24T04:10:53Z" }, { - "pred" : "hasRelatedSynonym", - "val" : "location", - "xrefs" : [ ] - } ], + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "originates from" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000825", + "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -33233,205 +34000,193 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete placement value" + "lbl" : "obsolete visual ability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001939", + "id" : "http://purl.obolibrary.org/obo/PATO_0000828", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - 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"val" : "A shape quality inhering in a bearer by virtue of the bearer's being oblong, with the lower end very much attenuated.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "spathulate", + "val" : "posteroventrally oriented", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T22:54:16Z" } ] }, "type" : "CLASS", - "lbl" : "spatulate" + "lbl" : "posteroventral orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000607", + "id" : "http://purl.obolibrary.org/obo/PATO_0040006", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] + }, "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:09:59Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - 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"val" : "A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The ability of a pathogen to produce an infectious disease or disorder in an another organism.", + "xrefs" : [ "https://orcid.org/0000-0001-8941-3984" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001931" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-08-02T04:24:52Z" } ] }, "type" : "CLASS", - "lbl" : "variant shape" + "lbl" : "pathogenicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001931", + "id" : "http://purl.obolibrary.org/obo/PATO_0040004", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness.", + "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0003-4606-0597" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001930" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-08-02T04:39:30Z" } ] }, "type" : "CLASS", - "lbl" : "invariant shape" + "lbl" : "plush" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000600", + "id" : "http://purl.obolibrary.org/obo/PATO_0040009", "meta" : { "definition" : { - "val" : "A width which is relatively large.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "wide/broad", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "broad", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "wide", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000599" + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:17:01Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased width" + "lbl" : "bowl shaped" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002410", + "id" : "http://purl.obolibrary.org/obo/PATO_0040007", "meta" : { "definition" : { - "val" : "This relation groups causal relations between material entities and causal relations between processes", - "xrefs" : [ ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:12:47Z" } ] }, - "type" : "PROPERTY", - "lbl" : "causally related to" + "type" : "CLASS", + "lbl" : "shell shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000602", + "id" : "http://purl.obolibrary.org/obo/PATO_0000820", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -33442,24 +34197,29 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete angle value" + "lbl" : "obsolete absolute taste acuity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001934", + "id" : "http://purl.obolibrary.org/obo/PATO_0040008", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being perfectly circular.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490", "https://www.merriam-webster.com/dictionary/fringe" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:15:10Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "orbicular" + "lbl" : "fringed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000601", + "id" : "http://purl.obolibrary.org/obo/PATO_0000822", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -33470,29 +34230,35 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete spatial value" + "lbl" : "obsolete taste type value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001935", + "id" : "http://purl.obolibrary.org/obo/PATO_0000821", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being roundish, a little inclining to be oblong.", - "xrefs" : [ "ISBN:0881923214" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "roundish", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obtuse" + "lbl" : "obsolete relative taste acuity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000604", + "id" : "http://purl.obolibrary.org/obo/PATO_0000824", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete water taste" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000823", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -33503,834 +34269,768 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete orientation value" + "lbl" : "obsolete quinine taste" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001932", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_33511", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "deuterostomes", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Deuterostomia" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040012", "meta" : { "definition" : { - "val" : "A pattern quality inhering in a bearer by virtue of the bearer's being placed alternately one above the other.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "A shape that is in the form of a plug, being tube-like and expanded on one end.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "plug like", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:24:41Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "alternate placement" + "lbl" : "plug shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000603", + "id" : "http://purl.obolibrary.org/obo/PATO_0000837", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete closure value" + "lbl" : "obsolete auditory threshold value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001933", + "id" : "http://purl.obolibrary.org/obo/pato#has_divisor_entity", "meta" : { - "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned on opposite sides on the same plane.", - "xrefs" : [ "ISBN:0881923214" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "opposite" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002404", - "meta" : { - "definition" : { - "val" : "inverse of upstream of", - "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - } ] - }, - "type" : "PROPERTY", - "lbl" : "causally downstream of" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002405", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - } ] - }, "type" : "PROPERTY", - "lbl" : "immediately causally downstream of" + "lbl" : "has_divisor_entity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000617", + "id" : "http://purl.obolibrary.org/obo/PATO_0040013", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "angled", + "val" : "dorsomedially directed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:27:57Z" } ] }, "type" : "CLASS", - "lbl" : "bent" + "lbl" : "dorsomedial orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001949", + "id" : "http://purl.obolibrary.org/obo/PATO_0000836", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly in a little point.", - "xrefs" : [ "ISBN:0881923214" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "pointleted" + "lbl" : "obsolete auditory ability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000616", + "id" : "http://purl.obolibrary.org/obo/PATO_0040010", "meta" : { "definition" : { - "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's lacking symmetry.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Mobility relative to a second entity.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "asymmetric", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "asymmetry", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "For example, distinct anteroposterior mobility of palatine relative to mesethmoid." + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:20:08Z" } ] }, "type" : "CLASS", - "lbl" : "asymmetrical" + "lbl" : "mobile relative to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001947", + "id" : "http://purl.obolibrary.org/obo/PATO_0000839", "meta" : { - "definition" : { - "val" : "A color pattern inhering in a bearer by virtue of bearer's being covered with reticulated lines of a different hue or degree of saturation.", - "xrefs" : [ "ISBN:0881923214" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "reticulated", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "net-like", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "netted" + "lbl" : "obsolete relative auditory ability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000619", + "id" : "http://purl.obolibrary.org/obo/PATO_0040011", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being overfilled.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "Immobility relative to a second entity.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000633" + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:21:07Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "For example: distinct anteroposterior immobility of palatine relative to mesethmoid." } ] }, "type" : "CLASS", - "lbl" : "crowded" + "lbl" : "immobile relative to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001948", + "id" : "http://purl.obolibrary.org/obo/PATO_0000838", "meta" : { - "definition" : { - "val" : "A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by two or more parallel channels.", - "xrefs" : [ "PATOC:JE" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "fluted", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "furrowed" + "lbl" : "obsolete absolute auditory ability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000618", + "id" : "http://purl.obolibrary.org/obo/PATO_0040016", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's having two sides; two-sided.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490", "https://www.merriam-webster.com/dictionary/pentagonal" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:39:48Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, "type" : "CLASS", - "lbl" : "bilateral" + "lbl" : "pentagonal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001941", + "id" : "http://purl.obolibrary.org/obo/PATO_0040017", "meta" : { "definition" : { - "val" : "A color consisting of yellow and green hues.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal.", + "xrefs" : [ "https://www.cancer.gov/publications/dictionaries/cancer-terms/def/dysplasia" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "dysgenesis", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T19:01:51Z" } ] }, "type" : "CLASS", - 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"val" : "A shape quality inhering in a bearer by virtue of the bearer's terminating gradually in a rounded end.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being transiently dispersed in a solid, liquid, or gas before settling due to gravity or centrifugal forces.", + "xrefs" : [ "ENVO:pb", "https://github.com/pato-ontology/pato/issues/91" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "blunt" + "lbl" : "quality of a suspension" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000622", + "id" : "http://purl.obolibrary.org/obo/PATO_0015012", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being upright in position or posture.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of roughly equal proportions of positively and negatively charged particles, having neither a defined volume nor defined shape, having internal magnetic fields, and being electrically conductive.", + "xrefs" : [ "https://github.com/pato-ontology/pato/issues/88" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "upright", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "erect" + "lbl" : "quality of a plasma" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001951", + "id" : "http://purl.obolibrary.org/obo/PATO_0015013", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being in opposition round a common axis.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "The degree to which the bearer is exposed to visible light.", + "xrefs" : [ "https://github.com/pato-ontology/pato/issues/89" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "whorled" + "lbl" : "degree of illumination" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000621", + "id" : "http://purl.obolibrary.org/obo/PATO_0015010", "meta" : { + "definition" : { + "val" : "An increase in humidity.", + "xrefs" : [ "https://github.com/pato-ontology/pato/issues/90" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "humid", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000628" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015011" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "increased humidity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001956", + "id" : "http://purl.obolibrary.org/obo/PATO_0015011", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits size variation or change.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An decrease in humidity.", + "xrefs" : [ "https://github.com/pato-ontology/pato/issues/90" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015010" } ] }, "type" : "CLASS", - "lbl" : "variability of size" + "lbl" : "decreased humidity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000624", + "id" : "http://purl.obolibrary.org/obo/PATO_0015016", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's becoming joined together with an additional entity.", - "xrefs" : [ "PATOC:nw" ] + "val" : "Having a shape or form that resembles a step of a stairway (e.g., a ledge or offset margin).", + "xrefs" : [ "http://www.thefreedictionary.com/stepped", "https://github.com/pato-ontology/pato/issues/82" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "introduced into", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "inserted", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "inserted into" + "lbl" : "stepped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000623", + "id" : "http://purl.obolibrary.org/obo/PATO_0015017", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's protruding or projecting from the body.", - "xrefs" : [ "sdvc:sdvc" ] + "val" : "A physical quality inhering in an entity by virtue of a portion of the bearer's molecular or polymolecular constituents present in one phase being dispersed in a portion of the bearer's constituents present in another phase.", + "xrefs" : [ "ENVO:pb", "https://github.com/pato-ontology/pato/issues/91", "https://goldbook.iupac.org/html/C/C01172.html" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "prolapsed", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "prolapse", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "exserted" + "lbl" : "quality of a colloid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001957", + "id" : "http://purl.obolibrary.org/obo/PATO_0015014", "meta" : { "definition" : { - "val" : "A variability of size which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An increase in illumination.", + "xrefs" : [ "https://github.com/pato-ontology/pato/issues/89" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low variability of size", + "pred" : "hasRelatedSynonym", + "val" : "illuminated", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001958" + "val" : "http://purl.obolibrary.org/obo/PATO_0015015" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased variability of size" + "lbl" : "increased degree of illumination" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000626", + "id" : "http://purl.obolibrary.org/obo/PATO_0015015", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being moved or displaced to one side so as to make lateral.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "An decrease in illumination.", + "xrefs" : [ "https://github.com/pato-ontology/pato/issues/89" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015014" } ] }, "type" : "CLASS", - "lbl" : "lateralized" + "lbl" : "decreased degree of illumination" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001954", + "id" : "http://purl.obolibrary.org/obo/PATO_0015018", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being linear, very narrow, tapering to a very fine point from a narrow base.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being suspended in a gas.", + "xrefs" : [ "ENVO:pb", "https://github.com/pato-ontology/pato/issues/91" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "needle-like", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "awl-shaped", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "subulate" + "lbl" : "quality of an aerosol" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001955", + "id" : "http://purl.obolibrary.org/obo/PATO_0015019", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being narrowly triangular, wider at the apex and tapering toward the base.", - "xrefs" : [ "wordreference:wordreference" ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter C.", + "xrefs" : [ "github:mah11", "https://github.com/pato-ontology/pato/issues/96" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "wedge-shaped", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cuneate" + "lbl" : "C-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000625", + "id" : "http://purl.obolibrary.org/obo/PATO_0015030", "meta" : { "definition" : { - "val" : "An oriented quality inhering in a bearer by virtue of the bearer's being reversed in position, order, or condition.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape that ineres in a bearer by virtue of the bearer's mass being distributed in a feather-like fashion.", + "xrefs" : [ "https://github.com/pato-ontology/pato/issues/122" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "reversed", + "pred" : "hasExactSynonym", + "val" : "feather-shaped", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "backward", + "pred" : "hasExactSynonym", + "val" : "plumed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -34339,220 +35039,215 @@ } ] }, "type" : "CLASS", - "lbl" : "inverted" + "lbl" : "plume-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0030004", + "id" : "http://purl.obolibrary.org/obo/pato#has_dividend_entity", "meta" : { - "definition" : { - "val" : "An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some but not all of what are normally posterior structures.", - "xrefs" : [ "PATOC:EJS" ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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"val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "partially dorsalized" + "lbl" : "negative regulation of binding" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0030006", + "id" : "http://purl.obolibrary.org/obo/pato#inversely_associated_with", "meta" : { "definition" : { - "val" : "A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally posterior structures and missing some but not all of what are normally anterior structures.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear.", + "xrefs" : [ "PATOC:cjm", "Wikipedia:Association_(statistics)" ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-08-26T02:50:24Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" + "val" : "cjm" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Association is weaker than correlation or proportionality. These relations may be later added to PATO." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "partially posterioralized" + "type" : "PROPERTY", + "lbl" : "inversely_associated_with" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0030007", + "id" : "http://purl.obolibrary.org/obo/PATO_0001295", "meta" : { "definition" : { - "val" : "A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally ventral structures and missing some but not all of what are normally dorsal structures.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "A reflective quality restricted to a particular wavelength.", + "xrefs" : [ "PATOC:cjm" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Typically used for light, but also applied to full EM spectrum." } ] }, "type" : "CLASS", - "lbl" : "partially ventralized" + "lbl" : "albedo" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0030000", + "id" : "http://purl.obolibrary.org/obo/PATO_0001296", "meta" : { "definition" : { - "val" : "A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some or all of what are normally posterior structures.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "A scalar optical quality which obtains by the magnitude of the light emitted by the bearer.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" } ] }, "type" : "CLASS", - "lbl" : "anterioralized" + "lbl" : "luminous flux" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0030001", + "id" : "http://purl.obolibrary.org/obo/PATO_0001293", "meta" : { "definition" : { - "val" : "A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally dorsal structures and missing some or all of what are normally ventral structures.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "A scalar EM radiation quality which obtains by the capacity of the bearer to retain radiation.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dorsalized" + "lbl" : "absorption quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0030002", + "id" : "http://purl.obolibrary.org/obo/PATO_0001294", "meta" : { "definition" : { - 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"val" : "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled backwards spirally on each side.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "A fluorescence quality inhering in a bearer by virtue of emitting light during exposure to radiation from an external source.", + "xrefs" : [ "web:www.thefreedictionary.com/" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -34561,624 +35256,502 @@ } ] }, "type" : "CLASS", - "lbl" : "revolute" + "lbl" : "fluorescent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000630", + "id" : "http://purl.obolibrary.org/obo/PATO_0015001", "meta" : { "definition" : { - "val" : "A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally posterior structures.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Absence due to a degenerative process.", + "xrefs" : [ "PATOC:PortlandMeetingFeb2015" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - 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"val" : "A positional quality inhering in a bearer by virtue of the bearer possessing an uninterrupted or unbroken connection or spatial distribution relative to the position of another entity.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A color consisting of green hue and high brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-09-25T15:07:34Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "continuous with" + "lbl" : "light green" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005012", + "id" : "http://purl.obolibrary.org/obo/PATO_0001255", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A color consisting of orange hue and high brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-09-25T15:11:47Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0005013" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "complete structure" + "lbl" : "light orange" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005013", + "id" : "http://purl.obolibrary.org/obo/PATO_0001256", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A color consisting of orange color and low brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-09-25T15:12:35Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0005012" } ] }, "type" : "CLASS", - "lbl" : "incomplete structure" + "lbl" : "dark orange" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005014", + "id" : "http://purl.obolibrary.org/obo/PATO_0001253", "meta" : { "definition" : { - "val" : "A spheroid shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, spherical.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A color consisting of magenta color and high brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-09-25T15:16:25Z" } ] }, "type" : "CLASS", - "lbl" : "subspherical" + "lbl" : "light magenta" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005010", + "id" : "http://purl.obolibrary.org/obo/PATO_0001254", "meta" : { "definition" : { - "val" : "A branched quality inhering in a bearer by virtue of the bearer's having many fine filaments or branches that give a feathery appearance: for example, resembling a feather.", - "xrefs" : [ "www.oxforddictionaries.com:http://www.oxforddictionaries.com/us/definition/american_english/plumose" ] + "val" : "A color consisting of magenta with low brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-09-25T15:03:17Z" } ] }, "type" : "CLASS", - "lbl" : "plumose" + "lbl" : "dark magenta" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001905", + "id" : "http://purl.obolibrary.org/obo/PATO_0001268", "meta" : { "definition" : { - "val" : "The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A color consisting of brown hue and low saturation.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "having physical part", + "val" : "pale brown", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -35187,67 +35760,63 @@ } ] }, "type" : "CLASS", - "lbl" : "has normal numbers of parts of type" + "lbl" : "desaturated brown" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001906", + "id" : "http://purl.obolibrary.org/obo/PATO_0001269", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's participation in movement.", + "val" : "A color consisting of cyan colour and high saturation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright cyan", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "movement quality" + "lbl" : "saturated cyan" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001903", + "id" : "http://purl.obolibrary.org/obo/PATO_0001262", "meta" : { "definition" : { - "val" : "A directional quality inhering in a bearer by virtue of the bearer's having two directions.", + "val" : "A color consisting of red hue and high brightness.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "bi-directional" + "lbl" : "light red" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001904", + "id" : "http://purl.obolibrary.org/obo/PATO_0001263", "meta" : { "definition" : { - "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction approximating the shape of a circle.", + "val" : "A color consisting of yellow hue and low brightness.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "circling direction" - }, { - "id" : "http://purl.obolibrary.org/obo/pato#cell_quality", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "cell_quality" - } ] - }, - "type" : "PROPERTY" + "lbl" : "dark yellow" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001909", + "id" : "http://purl.obolibrary.org/obo/PATO_0001260", "meta" : { "definition" : { - "val" : "A nucleate quality inhering in a bearer by virtue of the bearer's having three nuclei.", - "xrefs" : [ "thefreedictionary:thefreedictionary" ] + "val" : "A color consisting of purple color and high brightness.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -35256,378 +35825,457 @@ } ] }, "type" : "CLASS", - "lbl" : "trinucleate" + "lbl" : "light purple" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001907", + "id" : "http://purl.obolibrary.org/obo/PATO_0001261", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's being like the surface of a compact mass of grapes.", - "xrefs" : [ "PATOC:cvs" ] + "val" : "A color consisting of red hue and low brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "botryoidal" + "lbl" : "dark red" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001908", + "id" : "http://purl.obolibrary.org/obo/PATO_0001266", "meta" : { "definition" : { - "val" : "A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus.", + "val" : "A color consisting of blue hue and low saturation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pale blue", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "multinucleate" + "lbl" : "desaturated blue" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001901", + "id" : "http://purl.obolibrary.org/obo/PATO_0001267", "meta" : { "definition" : { - "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south.", + "val" : "A color consisting of brown hue and high saturation.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright brown", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001900" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "back" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#consider", - "type" : "PROPERTY", - "lbl" : "consider" + "lbl" : "saturated brown" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001902", + "id" : "http://purl.obolibrary.org/obo/PATO_0001264", "meta" : { "definition" : { - "val" : "A directional quality inhering in a bearer by virtue of the bearer's having one direction only.", + "val" : "A color consisting of yellow hue and high brightness.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "blond", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "unidirectional" + "lbl" : "light yellow" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001900", + "id" : "http://purl.obolibrary.org/obo/PATO_0001265", "meta" : { "definition" : { - "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north.", + "val" : "A color consisting of blue hue and high saturation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright blue", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001901" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "front" + "lbl" : "saturated blue" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005022", + "id" : "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", + "type" : "PROPERTY", + "lbl" : "eco subset" + }, { + "id" : "http://purl.obolibrary.org/obo/pato#realized_by", "meta" : { - "definition" : { - "val" : "A diameter that remains constant throughout the extent of an entity.", - "xrefs" : [ "PATOC:WD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-10-17T14:15:59Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "uniform diameter" + "type" : "PROPERTY", + "lbl" : "realized_by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005023", + "id" : "http://purl.obolibrary.org/obo/PATO_0001279", "meta" : { - "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is in the parasagittal plane.", - "xrefs" : [ "PATOC:WD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-10-17T14:21:30Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001280" } ] }, - "type" : "CLASS", - "lbl" : "parasagittal orientation" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005024", + "id" : "http://purl.obolibrary.org/obo/PATO_0001273", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed along the longitudinal or anterior-posterior axis.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A color consisting of grey color and high saturation.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-10-17T14:24:19Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "longitudinal orientation" + "lbl" : "obsolete bright grey" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005020", + "id" : "http://purl.obolibrary.org/obo/PATO_0001274", "meta" : { "definition" : { - "val" : "A shape quality inhering on a bearer by virtue of a bearer's shape lacking in pattern or uniformity; for example, it may have sides of different lengths, different curvatures, or unequal angles.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A color consisting of grey color and low saturation.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-10-03T10:23:17Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "irregularly shaped" + "lbl" : "obsolete pale grey" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005021", + "id" : "http://purl.obolibrary.org/obo/PATO_0001271", "meta" : { "definition" : { - "val" : "Cuspidate quality inhering in a bearer by virtue of the bearer's possessing a single cusp.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A color consisting of green hue and high saturation.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright green", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-10-17T14:14:04Z" } ] }, "type" : "CLASS", - "lbl" : "unicuspidate" + "lbl" : "saturated green" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001916", + "id" : "http://purl.obolibrary.org/obo/PATO_0001272", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and upper surface of an organism relative to another entity.", - "xrefs" : [ "PATOC:wd" ] + "val" : "A color consisting of green hue and low saturation.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pale green", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "posterodorsal to" + "lbl" : "desaturated green" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001917", + "id" : "http://purl.obolibrary.org/obo/PATO_0001277", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and abdomen of an organism relative to another entity.", - "xrefs" : [ "PATOC:wd" ] + "val" : "A color consisting of orange hue and high saturation.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright orange", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "anteroventral to" + "lbl" : "saturated orange" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001914", + "id" : "http://purl.obolibrary.org/obo/PATO_0001278", "meta" : { "definition" : { - "val" : "A physiological state which is characterized by normal electrical activity in neuronal tissue.", - "xrefs" : [ "PATOC:mb" ] + "val" : "A color consisting of orange hue and low saturation.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pale orange", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "non-ictal" + "lbl" : "desaturated orange" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001915", + "id" : "http://purl.obolibrary.org/obo/pato#has_divisor_quality", "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and upper surface of an organism relative to another entity.", - "xrefs" : [ "PATOC:wd" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "anterodorsal to" + "type" : "PROPERTY", + "lbl" : "has_divisor_quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001918", + "id" : "http://purl.obolibrary.org/obo/PATO_0001275", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and abdomen of an organism relative to another entity.", - "xrefs" : [ "PATOC:wd" ] + "val" : "A color consisting of magenta color and high saturation.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright magenta", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "posteroventral to" + "lbl" : "saturated magenta" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001919", + "id" : "http://purl.obolibrary.org/obo/PATO_0001276", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the back or upper surface of an organism.", - "xrefs" : [ "PATOC:mb" ] + "val" : "A color consisting of magenta color and low saturation.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pale magenta", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "mislocalised dorsally" + "lbl" : "desaturated magenta" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001912", + "id" : "http://purl.obolibrary.org/obo/PATO_0001270", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the state of bearer's mechanical, physical, and biochemical processes.", - "xrefs" : [ "PATOC:mb" ] + "val" : "A color consisting of cyan colour and low saturation.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pale cyan", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "physiological state" + "lbl" : "desaturated cyan" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001913", + "id" : "http://purl.obolibrary.org/obo/GO_0023056", "meta" : { "definition" : { - "val" : "A physiological state which is characterized by periods of high-frequency high amplitude electrical activity in neuronal tissue.", - "xrefs" : [ "PATOC:mb" ] + "val" : "Any process that activates, maintains or increases the frequency, rate or extent of a signaling process.", + "xrefs" : [ "GOC:mtg_signal" ] }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "positive regulation of signalling process", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "positive regulation of signaling process", + "xrefs" : [ "GOC:bf" ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-02-16T09:30:50Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "ictal" + "lbl" : "positive regulation of signaling" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001910", + "id" : "http://purl.obolibrary.org/obo/GO_0023057", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's one part being layered over another connected part.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process.", + "xrefs" : [ "GOC:mtg_signal" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "negative regulation of signaling process", + "xrefs" : [ "GOC:bf" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "negative regulation of signalling process", + "xrefs" : [ "GOC:mah" ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-02-16T09:30:50Z" } ] }, "type" : "CLASS", - "lbl" : "folded" + "lbl" : "negative regulation of signaling" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001911", + "id" : "http://purl.obolibrary.org/obo/GO_0023052", "meta" : { "definition" : { - "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting movement in a circular course.", - "xrefs" : [ "PATOC:mb" ] + "val" : "The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered.", + "xrefs" : [ "GOC:mtg_signal", "GOC:mtg_signaling_feb11", "GOC:signaling" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_pombe", "http://purl.obolibrary.org/obo/go#goslim_mouse" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "single organism signaling", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "signalling process", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasExactSynonym", + "val" : "signaling process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "signalling", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "biological signaling", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0023046" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "janelomax" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044700" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-02-16T09:30:50Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change." } ] }, "type" : "CLASS", - "lbl" : "circling" + "lbl" : "signaling" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001927", + "id" : "http://purl.obolibrary.org/obo/GO_0023051", "meta" : { "definition" : { - "val" : "A fluorescence which is lower than normal.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Any process that modulates the frequency, rate or extent of a signaling process.", + "xrefs" : [ "GOC:mtg_signal" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low fluorescence", - "xrefs" : [ ] + "pred" : "hasRelatedSynonym", + "val" : "regulation of signalling process", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "regulation of signaling process", + "xrefs" : [ "GOC:bf" ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001926" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-02-16T09:30:50Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "decreased fluorescence" + "lbl" : "regulation of signaling" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001928", + "id" : "http://purl.obolibrary.org/obo/PATO_0001284", "meta" : { "definition" : { - "val" : "A texture quality inhering in a bearer by virtue of a local accumulation of fluid underneath the surface of the bearer.", + "val" : "A color consisting of red hue and low saturation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "blistering", + "pred" : "hasExactSynonym", + "val" : "pale red", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -35636,192 +36284,238 @@ } ] }, "type" : "CLASS", - "lbl" : "blistered" + "lbl" : "desaturated red" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001925", + "id" : "http://purl.obolibrary.org/obo/PATO_0001285", "meta" : { "definition" : { - "val" : "A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A color consisting of yellow hue and high saturation.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright yellow", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This quality either inheres directly in the surface, or in the entity that has the surface. For example, to say that a particular fly wing is curved is shorthand for saying the wing has a surface which is curved." } ] }, "type" : "CLASS", - "lbl" : "surface feature shape" + "lbl" : "saturated yellow" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001926", + "id" : "http://purl.obolibrary.org/obo/PATO_0001282", "meta" : { "definition" : { - "val" : "A fluorescence which is higher than normal.", + "val" : "A color consisting of purple color and low saturation.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high fluorescence", + "val" : "pale purple", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001927" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased fluorescence" + "lbl" : "desaturated purple" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001929", + "id" : "http://purl.obolibrary.org/obo/PATO_0001283", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits shape variation or change.", + "val" : "A color consisting of red hue and high saturation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright red", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "variability of shape" + "lbl" : "saturated red" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001920", + "id" : "http://purl.obolibrary.org/obo/PATO_0001288", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the abdomen of an organism.", - "xrefs" : [ "PATOC:mb" ] + "val" : "A color consisting of red and brown hue and low brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "mislocalised ventrally" + "lbl" : "dark red brown" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001923", + "id" : "http://purl.obolibrary.org/obo/PATO_0001289", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the side of an organism.", - "xrefs" : [ "PATOC:mb" ] + "val" : "A color consisting of red and brown hue and high brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "mislocalised laterally" + "lbl" : "light red brown" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001924", + "id" : "http://purl.obolibrary.org/obo/PATO_0001286", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the middle of an organism.", - "xrefs" : [ "PATOC:mb" ] + "val" : "A color consisting of yellow hue and low saturation.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pale yellow", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "mislocalised medially" + "lbl" : "desaturated yellow" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001921", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_9347", "meta" : { - "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the front of an organism.", - "xrefs" : [ "PATOC:mb" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "Placentalia", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "placentals", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "placentals", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "placental mammals", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "eutherian mammals", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "mislocalised anteriorly" + "lbl" : "Eutheria" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001922", + "id" : "http://purl.obolibrary.org/obo/PATO_0001287", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the rear of an organism.", - "xrefs" : [ "PATOC:mb" ] + "val" : "A color consisting of red and brown hue.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "mislocalised posteriorly" + "lbl" : "red brown" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001097", + "id" : "http://purl.obolibrary.org/obo/GO_0016772", "meta" : { + "definition" : { + "val" : "Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).", + "xrefs" : [ "GOC:jl", "ISBN:0198506732" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "xrefs" : [ { + "val" : "EC:2.7" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "molecular_function" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative force value" + "lbl" : "transferase activity, transferring phosphorus-containing groups" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001098", + "id" : "http://purl.obolibrary.org/obo/PATO_0001280", "meta" : { + "definition" : { + "val" : "Pink color having medium brightness and low saturation.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright pink", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001279" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute force" + "lbl" : "dark pale pink" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001095", + "id" : "http://purl.obolibrary.org/obo/PATO_0001281", "meta" : { + "definition" : { + "val" : "A color consisting of purple color and high saturation.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright purple", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete force value" + "lbl" : "saturated purple" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001096", + "id" : "http://purl.obolibrary.org/obo/PATO_0001215", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute force value" + "lbl" : "obsolete time_unit" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001099", + "id" : "http://purl.obolibrary.org/obo/PATO_0001216", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -35832,9 +36526,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative force" + "lbl" : "obsolete volume_unit" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001090", + "id" : "http://purl.obolibrary.org/obo/PATO_0001213", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -35845,31 +36539,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute elasticity value" + "lbl" : "obsolete mass_unit" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001093", + "id" : "http://purl.obolibrary.org/obo/PATO_0001214", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative flux value" - }, { - "id" : "http://purl.obolibrary.org/obo/pato#value_slim", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Value slim" - } ] - }, - "type" : "PROPERTY" + "lbl" : "obsolete temparature_unit" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001094", + "id" : "http://purl.obolibrary.org/obo/PATO_0001219", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -35880,577 +36565,501 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute flux value" + "lbl" : "obsolete area_unit" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001091", + "id" : "http://purl.obolibrary.org/obo/PATO_0001217", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative elasticity value" + "lbl" : "obsolete energy_unit" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001092", + "id" : "http://purl.obolibrary.org/obo/PATO_0001218", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete flux value" + "lbl" : "obsolete substance_unit" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0051338", + "id" : "http://purl.obolibrary.org/obo/GO_0065009", "meta" : { "definition" : { - 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"val" : "Growing horizontal to the ground without setting roots.", - "xrefs" : [ "PATO:PG" ] + "val" : "Add as annotation triples in the granting ontology", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-10-12T01:33:50Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Person:Alan Ruttenberg" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Person:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "term replaced by" } ] }, - "type" : "CLASS", - "lbl" : "procumbent" + "type" : "PROPERTY", + "lbl" : "term replaced by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001058", + "id" : "http://purl.obolibrary.org/obo/RO_0002385", "meta" : { + "definition" : { + "val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002385" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_potential_to_developmentally_contribute_to" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute acceleration" + "type" : "PROPERTY", + "lbl" : "has potential to developmentally contribute to" }, { - 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"val" : "Extremely acute and aggressive onset of a pathological process.", - "xrefs" : [ "PATOC:PNS" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "per-acute", + "val" : "x has the potential to develop into y iff x develops into y or if x is capable of developing into y", "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002387" } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_potential_to_develop_into" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-09-15T02:57:46Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - 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"pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative strain" + "lbl" : "posterolateral orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002399", + "id" : "http://purl.obolibrary.org/obo/PATO_0002500", "meta" : { "definition" : { - "val" : "A rotation quality inhering in a bearer by virtue of being rotated towards the front and the middle of an organism.", - "xrefs" : [ "PATOC:JI" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrolaterally.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "ventrolaterally directed", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - 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"lbl" : "obsolete absolute energy" + "lbl" : "obsolete profound intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001070", + "id" : "http://purl.obolibrary.org/obo/RO_0002350", "meta" : { + "definition" : { + "val" : "is member of is a mereological relation between a item and a collection.", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002350" + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is member of" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "member_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "An organism that is a member of a population of organisms" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "SIO" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "member part of" } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute density" + "type" : "PROPERTY", + "lbl" : "member of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001086", + "id" : "http://purl.obolibrary.org/obo/PATO_0002526", "meta" : { + "definition" : { + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally.", + "xrefs" : [ "PATOC:EJS" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "antero-distal orientation", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-03-11T11:28:39Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002491" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "segerdel" } ] }, "type" : "CLASS", - "lbl" : "obsolete efficiency value" + "lbl" : "anterodistal orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001087", + "id" : "http://purl.obolibrary.org/obo/RO_0002351", "meta" : { + "definition" : { + "val" : "has member is a mereological relation between a collection and an item.", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002351" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "SIO" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_member" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative efficiency value" + "type" : "PROPERTY", + "lbl" : "has member" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001084", + "id" : "http://purl.obolibrary.org/obo/PATO_0002527", "meta" : { + "definition" : { + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally.", + "xrefs" : [ "PATOC:EJS" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "postero-distal orientation", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002504" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "segerdel" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-03-11T11:29:22Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative acceleration value" + "lbl" : "posterodistal orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001085", + "id" : "http://purl.obolibrary.org/obo/RO_0001018", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "contained in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Containment is location not involving parthood, and arises only where some immaterial continuant is involved." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "contained_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Intended meaning:\ndomain: material entity\nrange: spatial region or site (immaterial continuant)\n " } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute acceleration value" + "type" : "PROPERTY", + "lbl" : "contained in" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001088", + "id" : "http://purl.obolibrary.org/obo/RO_0001019", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "xrefs" : [ { + "val" : "RO:0001019" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "contains" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "contains" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute efficiency value" + "type" : "PROPERTY", + "lbl" : "contains" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001089", + "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "type" : "PROPERTY", + "lbl" : "shorthand" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002520", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer being shaped like a scute or an osteoderm.", + "xrefs" : [ "PATOC:EJS" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "segerdel" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-02-10T01:37:47Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete elasticity value" + "lbl" : "scute-like" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001082", + "id" : "http://purl.obolibrary.org/obo/PATO_0002521", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a funnel.", + "xrefs" : [ "PATOC:EJS" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "segerdel" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-02-10T01:40:05Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete damage value" + "lbl" : "funnel-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001083", + "id" : "http://purl.obolibrary.org/obo/RO_0001015", "meta" : { + "definition" : { + "val" : "a relation between two independent continuants, the location and the target, in which the target is entirely within the location", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0001015" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this cage is the location of this rat" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "location_of" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "location_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "is location of" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my head is the location of my brain" } ] }, - "type" : "CLASS", - "lbl" : "obsolete acceleration value" + "type" : "PROPERTY", + "lbl" : "location_of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001080", + "id" : "http://purl.obolibrary.org/obo/pato#hpo_slim", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Human phenotype slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001204", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative work" + "lbl" : "obsolete not enlarged" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001081", + "id" : "http://purl.obolibrary.org/obo/PATO_0002535", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a short and stout cylindrical shape.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-08-12T11:30:08Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete physical measure value" + "lbl" : "peg-like" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002090", + "id" : "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002575", - "val" : "http://purl.obolibrary.org/obo/BFO_0000063" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "ends_at_start_of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "meets" - }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)" + "val" : "Term not to be used for direct annotation" } ] }, - "type" : "PROPERTY", - "lbl" : "immediately precedes" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001017", + "id" : "http://purl.obolibrary.org/obo/PATO_0001205", "meta" : { + "definition" : { + "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having toothlike projections in the margin.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "toothed", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "dentate", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative occurence value" + "lbl" : "dentated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000169", + "id" : "http://purl.obolibrary.org/obo/PATO_0002536", "meta" : { "definition" : { - "val" : "An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a boomerang, with two arms connected at an angle.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-08-12T11:32:16Z" } ] }, "type" : "CLASS", - "lbl" : "viability" + "lbl" : "boomerang shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002348", + "id" : "http://purl.obolibrary.org/obo/PATO_0002533", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer resembling wood.", - "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/ligneous" ] + "val" : "A multipartite quality inhering in a bearer by virtue of the bearer being divided into two parts.", + "xrefs" : [ "PATOC:WD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T04:06:50Z" + "val" : "2014-08-12T11:12:13Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" } ] }, "type" : "CLASS", - "lbl" : "ligneous" + "lbl" : "bipartite" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000168", + "id" : "http://purl.obolibrary.org/obo/PATO_0001202", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000586" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative time" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001018", + "id" : "http://purl.obolibrary.org/obo/PATO_0002534", "meta" : { "definition" : { - "val" : "A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a plowshare.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "xrefs" : [ { - "val" : "Wikipedia:Physical_property" + "val" : "Image:http://2.bp.blogspot.com/_TbkIC-eqFNM/S66IJ3omNWI/AAAAAAAAFSk/pzThLJPvYZw/s1600/ard-detail.gif" } ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "relational physical quality", + "val" : "plow-share shaped", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-08-12T11:23:12Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0002079" } ] }, "type" : "CLASS", - "lbl" : "physical quality" + "lbl" : "plowshare shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002349", + "id" : "http://purl.obolibrary.org/obo/PATO_0001203", "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the base of an organism relative to another entity.", - "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/basal" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T04:12:25Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001873" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "basal to" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001499", + "id" : "http://purl.obolibrary.org/obo/PATO_0001208", "meta" : { "definition" : { - "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter).", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "An odor quality inhering in a bearer by virtue of the bearer's lacking odour.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "globular", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "rotund", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000408" } ] }, "type" : "CLASS", - "lbl" : "spherical" + "lbl" : "odorless" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002346", + "id" : "http://purl.obolibrary.org/obo/PATO_0002539", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two connected parts, roughly spherical, of different sizes.", - "xrefs" : [ "PATOC:MH" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a ring (a circular shape enclosing a space).", + "xrefs" : [ "PATOC:WD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "wasila.dahdul" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T03:58:10Z" + "val" : "2014-08-12T12:01:56Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "snowman-shaped" + "lbl" : "ring shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001015", + "id" : "http://purl.obolibrary.org/obo/PATO_0001209", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -37764,490 +38676,397 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative occurence" + "lbl" : "obsolete absolute function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002347", + "id" : "http://purl.obolibrary.org/obo/PATO_0002537", "meta" : { "definition" : { - "val" : "A conical quality inhering in a bearer by virtue of the bearer's resembling a cone, with the pointed end attached to an organism.", - "xrefs" : [ "wiktionary:http://en.wiktionary.org/wiki/obconical" ] + "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a shape not quite ovoid. approximately ovoid.", + "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/subovoid" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T04:05:28Z" + "val" : "2014-08-12T11:51:38Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "wasila.dahdul" } ] }, "type" : "CLASS", - "lbl" : "obconical" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001016", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete absolute occurence value" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0051716", - "meta" : { - "definition" : { - "val" : "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.", - "xrefs" : [ "GOC:bf", "GOC:jl" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" - } ] - }, - "type" : "CLASS", - "lbl" : "cellular response to stimulus" + "lbl" : "subovoid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001019", + "id" : "http://purl.obolibrary.org/obo/PATO_0001206", "meta" : { "definition" : { - "val" : "A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "density", + "pred" : "hasExactSynonym", + "val" : "serrate", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001975" } ] }, "type" : "CLASS", - "lbl" : "mass density" + "lbl" : "serrated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002340", + "id" : "http://purl.obolibrary.org/obo/PATO_0002538", "meta" : { "definition" : { - "val" : "A quality of being minutely hispid.", - "xrefs" : [ "PATOC:DD" ] + "val" : "A shape quality that obtains by virtue of the bearer being concave on one side and convex on the other.", + "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/concavo-convex" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "concavoconvex", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "wasila.dahdul" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T02:53:21Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "2014-08-12T11:56:13Z" } ] }, "type" : "CLASS", - "lbl" : "hispidulous" + "lbl" : "concavo-convex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001493", + "id" : "http://purl.obolibrary.org/obo/PATO_0001207", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001494" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "hypertrophic growth" + "lbl" : "obsolete absolute compatability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000161", + "id" : "http://purl.obolibrary.org/obo/RO_0002334", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.", - "xrefs" : [ "PATOC:melissa" ] + "val" : "inverse of regulates", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "regulated by (processual)" } ] }, - "type" : "CLASS", - "lbl" : "rate" + "type" : "PROPERTY", + "lbl" : "regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045070", + "id" : "http://purl.obolibrary.org/obo/PATO_0002531", "meta" : { - "definition" : { - "val" : "A tolerance to an external stimulus which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "PATO:0002631" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "obsoleted because the ID was accidentally reused" } ] }, "type" : "CLASS", - "lbl" : "normal tolerance to" + "lbl" : "obsolete refractory" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002341", + "id" : "http://purl.obolibrary.org/obo/PATO_0001200", "meta" : { "definition" : { - "val" : "A quality of being covered with short, dense, matted hairs.", - "xrefs" : [ "thefreedictionary:www.thefreedictionary.com" ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter T.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T02:55:56Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "tomentose" + "lbl" : "T-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000160", + "id" : "http://purl.obolibrary.org/obo/PATO_0001201", "meta" : { + "definition" : { + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter Y.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative incidence" + "lbl" : "Y-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001010", + "id" : "http://purl.obolibrary.org/obo/PATO_0002532", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "PATO:0002632" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "obsoleted because the ID was accidentally reused" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete relative intensity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001494", - "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001493" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "hypotrophic growth" + "lbl" : "obsolete secondary" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045071", + "id" : "http://purl.obolibrary.org/obo/RO_0002335", "meta" : { "definition" : { - "val" : "A tonicity which is relatively normal or average", + "val" : "inverse of negatively regulates", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "normal tonicity" + "type" : "PROPERTY", + "lbl" : "negatively regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001491", + "id" : "http://purl.obolibrary.org/obo/RO_0002336", "meta" : { "definition" : { - "val" : "A paedomorphic growth quality which is due to a reduced rate.", - "xrefs" : [ "PATOC:mh" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "neotenic growth", + "val" : "inverse of positively regulates", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "neotenous growth" + "type" : "PROPERTY", + "lbl" : "positively regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000163", + "id" : "http://purl.obolibrary.org/obo/PATO_0002530", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "PATO:0002630" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "obsoleted because the ID was accidentally reused" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative rate" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000162", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete absolute rate" + "lbl" : "obsolete episodic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045072", + "id" : "http://purl.obolibrary.org/obo/ENVO_01000952", "meta" : { "definition" : { - "val" : "A turgor which is relatively normal or average", - "xrefs" : [ ] + "val" : "A process during which a natural environmental system is altered by human action.", + "xrefs" : [ "https://en.wikipedia.org/wiki/Anthropization" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "anthropization", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "normal turgor" + "lbl" : "anthropisation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001492", + "id" : "http://purl.obolibrary.org/obo/ENVO_01000951", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] + "definition" : { + "val" : "An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition.", + "xrefs" : [ "https://en.wikipedia.org/wiki/Anthropization", "https://en.wikipedia.org/wiki/Natural_environment" ] + } }, "type" : "CLASS", - "lbl" : "growth rate" + "lbl" : "natural environment" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001497", + "id" : "http://purl.obolibrary.org/obo/PATO_0000763", "meta" : { "definition" : { - "val" : "A reproductive quality inhering in the young of an animal by virtue of the bearer's disposition to survive and develop normally.", + "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's being affected by loss of the ability to move a body part.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "palsy", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "brood viability" + "lbl" : "paralysed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002344", + "id" : "http://purl.obolibrary.org/obo/PATO_0000762", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being characterized by fine, entangled hairs giving the appearance of cobweb.", - "xrefs" : [ "PATOC:DD" ] + "val" : "Diminished, damaged, or weakened.", + "xrefs" : [ "answers.com:answers.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", + "val" : "PATO:0001624" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T03:49:00Z" - } ] - }, - "type" : "CLASS", - "lbl" : "arachnose" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001013", - "meta" : { - "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute intensity value" + "lbl" : "obsolete impaired" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000165", + "id" : "http://purl.obolibrary.org/obo/RO_0002331", "meta" : { "definition" : { - "val" : "A quality in which events occur in sequence.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "c involved_in p if and only if c enables some process p', and p' is part of p", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "time" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001498", - "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001439" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "enables part of" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "actively involved in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Involved_in" } ] }, - "type" : "CLASS" + "type" : "PROPERTY", + "lbl" : "involved in" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001014", + "id" : "http://purl.obolibrary.org/obo/PATO_0000765", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute occurence" + "lbl" : "obsolete absolute consumption value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000164", + "id" : "http://purl.obolibrary.org/obo/PATO_0000764", "meta" : { + "definition" : { + "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's receiving or being subjected to an action without responding or initiating an action in return.", + "xrefs" : [ "www.answers.com:www.answers.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative temporal" + "lbl" : "passive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002345", + "id" : "http://purl.obolibrary.org/obo/RO_0002333", "meta" : { "definition" : { - "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc", - "xrefs" : [ "PATOC:MH" ] + "val" : "inverse of enables", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T03:55:16Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "lemon-shaped" + "type" : "PROPERTY", + "lbl" : "enabled by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002342", + "id" : "http://purl.obolibrary.org/obo/PATO_0055001", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being a cupule, with a structure similar to a cup that also encloses the ovule in partiality.", - "xrefs" : [ "PATOC:DD" ] + "val" : "A spatial distribution of a process in which the process occupies a smaller length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type.", + "xrefs" : [ "orcid:0000-0003-4148-4606" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T02:59:07Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "midori" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2019-07-29T14:22:24Z" } ] }, "type" : "CLASS", - "lbl" : "cupulate" + "lbl" : "decreased spatial extent of a process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001495", + "id" : "http://purl.obolibrary.org/obo/PATO_0000767", "meta" : { "definition" : { - "val" : "A concave quality inhering in a bearer by virtue of the bearer's shape being a V-shaped cut.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A consumption which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high consumption", + "xrefs" : [ ] + }, { "pred" : "hasRelatedSynonym", - "val" : "indented", + "val" : "increased propensity to consume", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "notched" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001011", - "meta" : { - "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Use GO:0007631" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { @@ -38256,63 +39075,79 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute intensity" + "lbl" : "obsolete increased consumption" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000167", + "id" : "http://purl.obolibrary.org/obo/PATO_0055002", "meta" : { "definition" : { - "val" : "A limited, often assigned period of activity.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "A spatial distribution of a process in which the process occupies a greater length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type.", + "xrefs" : [ "https://orcid.org/0000-0003-4148-4606" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2019-07-29T14:23:31Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "midori" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete bouts" + "lbl" : "increased spatial extent of a process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001012", + "id" : "http://purl.obolibrary.org/obo/PATO_0000766", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative intensity value" + "lbl" : "obsolete relative consumption value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002343", + "id" : "http://purl.obolibrary.org/obo/PATO_0000769", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's lying or growing on the ground but with erect or rising tips.", - "xrefs" : [ "thefreedictionary:www.thefreedictionary.com" ] + "val" : "A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T03:13:12Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000770" } ] }, "type" : "CLASS", - "lbl" : "decumbent" + "lbl" : "coordinated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000166", + "id" : "http://purl.obolibrary.org/obo/PATO_0000768", "meta" : { + "definition" : { + "val" : "A consumption which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low consumption", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "decreased propensity to consume", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Use GO:0007631" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { @@ -38321,236 +39156,247 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute time" + "lbl" : "obsolete decreased consumption" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001496", + "id" : "http://purl.obolibrary.org/obo/RO_0002327", "meta" : { - "definition" : { - "val" : "A reproductive quality inhering in the young of an animal by virtue of the bearer's being cared for at one time.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "brood quality" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045077", - "meta" : { - "definition" : { - "val" : "A variability of size which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is executing" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is catalyzing" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "a particular instances of akt-2 enables some instance of protein kinase activity" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "catalyzes" } ] }, - "type" : "CLASS", - "lbl" : "normal variability of size" + "type" : "PROPERTY", + "lbl" : "enables" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045078", + "id" : "http://purl.obolibrary.org/obo/RO_0002328", "meta" : { "definition" : { - "val" : "A variability of temperature which is relatively normal or average", + "val" : "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "xrefs" : [ { + "val" : "RO:0002328" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This is a grouping relation that collects relations used for the purpose of connecting structure and function" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "functionally_related_to" } ] }, - "type" : "CLASS", - "lbl" : "normal variability of temperature" + "type" : "PROPERTY", + "lbl" : "functionally related to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045079", + "id" : "http://purl.obolibrary.org/obo/RO_0002329", "meta" : { "definition" : { - "val" : "A velocity which is relatively normal or average", + "val" : "this relation holds between c and p when c is part of some c', and c' is capable of p.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "xrefs" : [ { + "val" : "RO:0002329" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "part_of_structure_that_is_capable_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "false" } ] }, - "type" : "CLASS", - "lbl" : "normal velocity" + "type" : "PROPERTY", + "lbl" : "part of structure that is capable of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045073", + "id" : "http://purl.obolibrary.org/obo/RO_0002323", "meta" : { "definition" : { - "val" : "A quality of aprocess that has a value that is normal or average.", + "val" : "A mereological relationship or a topological relationship", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-21T14:11:01Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "normal process quality" + "type" : "PROPERTY", + "lbl" : "mereotopologically related to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045074", + "id" : "http://purl.obolibrary.org/obo/RO_0002324", "meta" : { "definition" : { - "val" : "A variability which is relatively normal or average", + "val" : "A relationship that holds between entities participating in some developmental process (GO:0032502)", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" } ] }, - "type" : "CLASS", - "lbl" : "normal variability" + "type" : "PROPERTY", + "lbl" : "developmentally related to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001490", + "id" : "http://purl.obolibrary.org/obo/PATO_0000761", "meta" : { "definition" : { - "val" : "A growth quality of a process inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced or increased growth.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hypoactive", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000760" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "heterochronic growth" + "lbl" : "decreased behavioural activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045075", + "id" : "http://purl.obolibrary.org/obo/RO_0002326", "meta" : { - "definition" : { - "val" : "A variability which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We would like to say\n\nif and only if\n exists c', p'\n c part_of c' and c' capable_of p\n and\n c capable_of p' and p' part_of p\nthen\n c contributes_to p\n\nHowever, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. " + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to \"ribosome binding\". And all three are part_of an eIF2 complex" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity." } ] }, - "type" : "CLASS", - "lbl" : "normal variability of color" + "type" : "PROPERTY", + "lbl" : "contributes to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045076", + "id" : "http://purl.obolibrary.org/obo/PATO_0000760", "meta" : { "definition" : { - "val" : "A variability of rate which is relatively normal or average", - "xrefs" : [ ] + "val" : "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hyperactive", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000761" } ] }, "type" : "CLASS", - "lbl" : "normal variability of rate" + "lbl" : "increased behavioural activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001028", + "id" : "http://purl.obolibrary.org/obo/PATO_0000774", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the rate of change of the bearer's velocity in either speed or direction.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Acceleration" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "acceleration" + "lbl" : "obsolete bizarre gate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002359", + "id" : "http://purl.obolibrary.org/obo/PATO_0000773", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's width being notably higher than its length.", + "val" : "A discrimination quality in a bearer by virtue of the bearer's liking a perceived stimulus.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-03-13T06:04:00Z" } ] }, "type" : "CLASS", - "lbl" : "broad" + "lbl" : "preference" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001029", + "id" : "http://purl.obolibrary.org/obo/PATO_0000776", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of ratio of the bearer's output to the bearer's input.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "efficiency" + "lbl" : "obsolete memory value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000179", + "id" : "http://purl.obolibrary.org/obo/PATO_0000775", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -38561,76 +39407,35 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete body position" + "lbl" : "obsolete learning value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002357", + "id" : "http://purl.obolibrary.org/obo/PATO_0000778", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a strait side and an arched side giving the bearer the form of the letter D.", - "xrefs" : [ "PATOC:AE" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-02-21T11:46:51Z" - } ] - }, - "type" : "CLASS", - "lbl" : "D-shaped" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001026", - "meta" : { - "definition" : { - "val" : "A physical quality which is equal to the energy transferred by a force to a moving object.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Work" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "W", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "work" + "lbl" : "obsolete short term memory value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002358", + "id" : "http://purl.obolibrary.org/obo/PATO_0000777", "meta" : { - "definition" : { - "val" : "An elongated raised margin or border.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "ridge-like", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-02-21T12:27:39Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "ridged" + "lbl" : "obsolete long term memory value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001027", + "id" : "http://purl.obolibrary.org/obo/PATO_0000779", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -38641,96 +39446,87 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete physical quantity" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002086", - "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)" - } ] - }, - "type" : "PROPERTY", - "lbl" : "ends after" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002087", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "starts_at_end_of" - } ] - }, - "type" : "PROPERTY", - "lbl" : "immediately preceded by" + "lbl" : "obsolete absolute locomotor activity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002351", + "id" : "http://purl.obolibrary.org/obo/PATO_0000770", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer resembling or containing flesh.", - "xrefs" : [ "wiktionary:http://en.wiktionary.org/wiki/fleshy" ] + "val" : "A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T04:15:30Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000769" } ] }, "type" : "CLASS", - "lbl" : "fleshy" + "lbl" : "uncoordinated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001020", + "id" : "http://purl.obolibrary.org/obo/PATO_0000772", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of whether the bearer has been harmed or injured or spoiled.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A preference quality in a bearer by virtue of the bearer's having no preference to a perceived stimulus.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "damage" + "lbl" : "indifference" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045080", + "id" : "http://purl.obolibrary.org/obo/RO_0002314", "meta" : { "definition" : { - "val" : "A virulence which is relatively normal or average", + "val" : "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + } ] + }, + "type" : "PROPERTY", + "lbl" : "inheres in part of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000771", + "meta" : { + "definition" : { + "val" : "A preference quality in a bearer by virtue of the bearer's disliking a perceived stimulus.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal virulence" + "lbl" : "aversion" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000172", + "id" : "http://purl.obolibrary.org/obo/IAO_0000002", + "type" : "INDIVIDUAL", + "lbl" : "example to be eventually removed" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000785", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -38741,66 +39537,48 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative yield" + "lbl" : "obsolete muscle function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002352", + "id" : "http://purl.obolibrary.org/obo/PATO_0000784", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's upper parts die back to the rootstock at the end of the growing season.", - "xrefs" : [ "PATOC:PG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T04:29:36Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "herbaceous" + "lbl" : "obsolete excretory function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045081", + "id" : "http://purl.obolibrary.org/obo/PATO_0000787", "meta" : { - "definition" : { - "val" : "A viscosity which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal viscosity" + "lbl" : "obsolete neurobehavioral function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001021", + "id" : "http://purl.obolibrary.org/obo/PATO_0000786", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's capacity to do work.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Energy" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "energy" + "lbl" : "obsolete neural function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000171", + "id" : "http://purl.obolibrary.org/obo/PATO_0000789", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -38811,9 +39589,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute yield" + "lbl" : "obsolete respiratory function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000174", + "id" : "http://purl.obolibrary.org/obo/PATO_0000788", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -38824,207 +39602,180 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete autonomic function" + "lbl" : "obsolete reproductive function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045082", + "id" : "http://purl.obolibrary.org/obo/RO_0002305", "meta" : { - "definition" : { - "val" : "A waxiness which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.org/dc/terms/creator", + "val" : "cjm" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "cjm" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y" } ] }, - "type" : "CLASS", - "lbl" : "normal waxiness" + "type" : "PROPERTY", + "lbl" : "causally upstream of, negative effect" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045083", + "id" : "http://purl.obolibrary.org/obo/PATO_0000781", "meta" : { - "definition" : { - "val" : "A wetness which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal wetness" + "lbl" : "obsolete circulatory function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000173", + "id" : "http://purl.obolibrary.org/obo/PATO_0000780", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete function" + "lbl" : "obsolete relative locomotor activity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002350", + "id" : "http://purl.obolibrary.org/obo/PATO_0000783", "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the stalk of an organism relative to another entity.", - "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/cauline" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T04:13:06Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "cauline to" + "lbl" : "obsolete digestive function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002355", + "id" : "http://purl.obolibrary.org/obo/PATO_0000782", "meta" : { - "definition" : { - "val" : "A quality of a physical object that is currently realizing none of its functions.", - "xrefs" : [ "PATOC:RH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete defensive function value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002304", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T04:52:14Z" + "pred" : "http://purl.org/dc/terms/creator", + "val" : "cjm" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002354" + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "cjm" } ] }, - "type" : "CLASS", - "lbl" : "inactive" + "type" : "PROPERTY", + "lbl" : "causally upstream of, positive effect" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001024", + "id" : "http://purl.obolibrary.org/obo/GO_0098796", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's rate of doing work.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Power" ] + "val" : "Any protein complex that is part of a membrane.", + "xrefs" : [ "GOC:dos" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "cellular_component" } ] }, "type" : "CLASS", - "lbl" : "power" + "lbl" : "membrane protein complex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000176", + "id" : "http://purl.obolibrary.org/obo/GO_0098797", "meta" : { + "definition" : { + "val" : "Any protein complex that is part of the plasma membrane.", + "xrefs" : [ "GOC:dos" ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "cellular_component" } ] }, "type" : "CLASS", - "lbl" : "obsolete metabolic function" + "lbl" : "plasma membrane protein complex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002356", + "id" : "http://purl.obolibrary.org/obo/PATO_0000796", "meta" : { - "definition" : { - "val" : "A quality of a physical object that has been constantly realizing some of its functions.", - "xrefs" : [ "PATOC:RH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - 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"val" : "2012-01-31T04:51:42Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "activation quality" + "lbl" : "obsolete urination value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000178", + "id" : "http://purl.obolibrary.org/obo/PATO_0000799", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -39035,63 +39786,48 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative function" + "lbl" : "obsolete muscle elevation value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001022", + "id" : "http://purl.obolibrary.org/obo/PATO_0000790", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the amount of momentum caused a certain force will produce over time.", - "xrefs" : [ "url:http://www.wikipremed.com/home_resources/010104_momentum_concepts.pdf" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "impulse" + "lbl" : "obsolete heart rate value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002354", + "id" : "http://purl.obolibrary.org/obo/PATO_0000792", "meta" : { - "definition" : { - "val" : "A quality of an physical object that is currently realizing one of its functions.", - "xrefs" : [ "PATOC:RH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T04:52:04Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - 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"xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal duration" + "lbl" : "obsolete autonomic function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045085", + "id" : "http://purl.obolibrary.org/obo/PATO_0000729", "meta" : { - "definition" : { - "val" : "A duration quality of temperature quality of a process which is relatively normal.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal duration of temperature" + "lbl" : "obsolete physiological function value" }, { - 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"id" : "http://purl.obolibrary.org/obo/PATO_0000183", + "id" : "http://purl.obolibrary.org/obo/PATO_0000738", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete limb tone" + "lbl" : "obsolete enzyme function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002363", + "id" : "http://purl.obolibrary.org/obo/PATO_0000737", "meta" : { - "definition" : { - "val" : "A medium brown color with a metallic sheen, resembles the actual alloy bronze.", - "xrefs" : [ "PATO:LC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-05-03T11:08:18Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "bronze" + "lbl" : "obsolete functional value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001032", + "id" : "http://purl.obolibrary.org/obo/PATO_0000739", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000140" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete absolute enzyme function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000182", + "id" : "http://purl.obolibrary.org/obo/PATO_0000730", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -39408,158 +40135,104 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete abdominal tone" + "lbl" : "obsolete relative function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000185", + "id" : "http://purl.obolibrary.org/obo/PATO_0000732", "meta" : { - "definition" : { - "val" : "A behavioral quality inhering in a bearer by virtue of having physical steadiness.", - "xrefs" : [ "thefreedictionary:thefreedictionary" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "balance" + "lbl" : "obsolete body tone value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0025000", + "id" : "http://purl.obolibrary.org/obo/PATO_0000731", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be used as a safe means of hydration.", - "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "drinkability", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2015-09-01T16:16:44Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "pbuttigieg" } ] }, "type" : "CLASS", - "lbl" : "potability" + "lbl" : "obsolete body position value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002360", + "id" : "http://purl.obolibrary.org/obo/PATO_0000734", "meta" : { - "definition" : { - "val" : "A disposition that can be compared on a linear scale - that is that it can be increased or decreased.", - "xrefs" : [ "PATOC:RH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-03-16T06:31:50Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "tendency" + "lbl" : "obsolete abdominal tone value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002361", + "id" : "http://purl.obolibrary.org/obo/PATO_0000733", "meta" : { - "definition" : { - "val" : "A tendency which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002362" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-03-16T06:31:57Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "increased tendency" + "lbl" : "obsolete piloerection value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001030", + "id" : "http://purl.obolibrary.org/obo/GO_0007165", "meta" : { "definition" : { - "val" : "A physical quality that exists by virtue of the rate of flow of the bearer across a given surface.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. 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For signaling between cells, signal transduction is restricted to events at and within the receiving cell.", + "xrefs" : [ "GOC:go_curators", "GOC:mtg_signaling_feb11" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "flux" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045050", - "meta" : { - "definition" : { - "val" : "A size quality which is relatively normal or average", + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "xrefs" : [ { + "val" : "Wikipedia:Signal_transduction" + }, { + "val" : "MIPS_funcat:30" + } ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "signalling pathway", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "signaling cascade", "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "hasRelatedSynonym", + "val" : "signaling pathway", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - } ] - }, - "type" : "CLASS", - "lbl" : "normal size" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0025001", - "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration.", - "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "undrinkable", + "pred" : "hasNarrowSynonym", + "val" : "signalling cascade", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0025002" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that signal transduction is defined broadly to include a ligand interacting with a receptor, downstream signaling steps and a response being triggered. 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"definition" : { - "val" : "Male quality of having complete, unaltered reproductive organs.", - "xrefs" : [ "PATOC:MF" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-05-03T11:19:06Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "intact male" + "lbl" : "obsolete limb tone value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000187", + "id" : "http://purl.obolibrary.org/obo/PATO_0000749", "meta" : { - "definition" : { - "val" : "A relational quality of occurrent inhering in a bearer by virtue of the bearer's ability to consume a resource.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "propensity to consume", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Use GO:0007631" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete consumption quality" + "lbl" : "obsolete gait value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0025002", + "id" : "http://purl.obolibrary.org/obo/PATO_0000748", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration.", - "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "drinkable", - 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"synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "force amplitude", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "force" + "lbl" : "obsolete high enzyme function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000186", + "id" : "http://purl.obolibrary.org/obo/PATO_0000740", "meta" : { - "definition" : { - "val" : "An organismal quality inhering in a bearer by virtue of the bearer's behavior aggregate of the responses or reactions or movements in a given situation.", - "xrefs" : [ "PATOC:GVG" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "behavioural quality", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001722" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "behavioral quality" + "lbl" : "obsolete relative enzyme function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001036", + "id" : "http://purl.obolibrary.org/obo/PATO_0000743", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -39700,69 +40321,48 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative life span" + "lbl" : "obsolete arousal value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002367", + "id" : "http://purl.obolibrary.org/obo/PATO_0000742", "meta" : { - "definition" : { - "val" : "Male quality of being incapable to reproduce because of functional loss of the testicles from surgical removal or chemical means.", - "xrefs" : [ "PATOC:MF" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-05-03T11:22:29Z" } ] }, "type" : "CLASS", - "lbl" : "castrated male" + "lbl" : "obsolete low enzyme function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002364", + "id" : "http://purl.obolibrary.org/obo/PATO_0000745", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001154" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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"id" : "http://purl.obolibrary.org/obo/PATO_0001033", + "id" : "http://purl.obolibrary.org/obo/PATO_0000747", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -39773,339 +40373,263 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete stiffness" + "lbl" : "obsolete coordination value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000188", + "id" : "http://purl.obolibrary.org/obo/PATO_0000746", "meta" : { - "definition" : { - "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's having or lacking skillful and effective interaction of movement.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000706" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute amplitude" + "lbl" : "decreased threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000194", + "id" : "http://purl.obolibrary.org/obo/PATO_0000701", "meta" : { + "definition" : { + "val" : "A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000700" } ] }, "type" : "CLASS", - 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"lbl" : "susceptibility toward" + "lbl" : "positive regulation of protein binding" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002374", + "id" : "http://purl.obolibrary.org/obo/GO_0032091", "meta" : { "definition" : { - "val" : "Recurrent and often more or less cyclic alteration.", - "xrefs" : [ "PATOC:DS" ] + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding.", + "xrefs" : [ "GOC:mah" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of protein binding", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of protein binding" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000716", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000499" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-07-05T01:52:36Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "fluctuating" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002371", + "id" : "http://purl.obolibrary.org/obo/PATO_0000715", "meta" : { - "definition" : { - "val" : "A viviparous organism having given birth one time.", - "xrefs" : [ "wiki:http://en.wikipedia.org/wiki/Parity_(biology)" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-05-03T11:29:38Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000498" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "primiparous" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045060", + "id" : "http://purl.obolibrary.org/obo/PATO_0000718", "meta" : { "definition" : { - "val" : "A volume which is relatively normal or average", - "xrefs" : [ ] + "val" : "A viability quality inhering in a population by virtue of the bearer's long term survival inability.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "normal volume" + "lbl" : "lethal (sensu genetics)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000196", + "id" : "http://purl.obolibrary.org/obo/PATO_0000717", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -40318,77 +40929,66 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete vocalization" + "lbl" : "obsolete viability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001040", + "id" : "http://purl.obolibrary.org/obo/GO_0004872", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/GO_0038023" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative ratio" + "lbl" : "receptor activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002372", + "id" : "http://purl.obolibrary.org/obo/PATO_0000719", "meta" : { "definition" : { - "val" : "A viviparous organism that has given birth five or more times.", - "xrefs" : [ "wiki:http://en.wikipedia.org/wiki/Parity_(biology)" ] + "val" : "A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-05-03T11:30:28Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "grand multiparous" + "lbl" : "viable" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000195", + "id" : "http://purl.obolibrary.org/obo/PATO_0000710", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete startle response" + "lbl" : "obsolete time value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045061", + "id" : "http://purl.obolibrary.org/obo/PATO_0000712", "meta" : { - "definition" : { - "val" : "A width which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "normal width" + "lbl" : "obsolete bouts value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001041", + "id" : "http://purl.obolibrary.org/obo/PATO_0000711", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -40399,33 +40999,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative amplitude" + "lbl" : "obsolete absolute time value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002377", + "id" : "http://purl.obolibrary.org/obo/PATO_0000714", "meta" : { - "definition" : { - "val" : "A structure quality inhering in a bearer by virtue of the bearer's being not filed with air.", - "xrefs" : [ "PATOC:CVS" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-07-05T02:56:07Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002376" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "uninflated" + "lbl" : "obsolete latency value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000198", + "id" : "http://purl.obolibrary.org/obo/PATO_0000713", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -40436,53 +41025,43 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute consumption" + "lbl" : "obsolete relative time value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001046", + "id" : "http://purl.obolibrary.org/obo/go#goslim_mouse", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "resistance", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001043" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Mouse GO slim" } ] }, - "type" : "CLASS", - "lbl" : "resistance to" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002378", + "id" : "http://purl.obolibrary.org/obo/GO_0098772", "meta" : { "definition" : { - "val" : "Having a shape that resembles a many-lobed \"berry,\" such as a raspberry.", - "xrefs" : [ "wikipedia:https://en.wikipedia.org/wiki/Acinus" ] + "val" : "A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators.", + "xrefs" : [ "GOC:dos", "GOC:pt" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-07-05T02:58:05Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "molecular_function" } ] }, "type" : "CLASS", - "lbl" : "acinus" + "lbl" : "molecular function regulator" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000197", + "id" : "http://purl.obolibrary.org/obo/ENVO_00002297", + "meta" : { + "definition" : { + "val" : "A material entity which determines an environmental system.", + "xrefs" : [ "DOI:10.1186/2041-1480-4-43", "NM:nm", "ORCID:0000-0002-4366-3088" ] + } + }, + "type" : "CLASS", + "lbl" : "environmental feature" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001174", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -40493,9 +41072,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete transfer_arousal" + "lbl" : "obsolete urine composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001047", + "id" : "http://purl.obolibrary.org/obo/PATO_0001175", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -40506,85 +41085,73 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute resistance" + "lbl" : "obsolete urine composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001044", + "id" : "http://purl.obolibrary.org/obo/PATO_0001172", "meta" : { + "definition" : { + "val" : "An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way.", + "xrefs" : [ "merriam-webster:merriam-webster" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001171" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute power" + "lbl" : "inelastic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002375", + "id" : "http://purl.obolibrary.org/obo/PATO_0001173", "meta" : { - "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a trumpet.", - "xrefs" : [ "PATOC:DS" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-07-05T02:45:17Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "trumpet-shaped" + "lbl" : "obsolete urine glucose composition value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002376", + "id" : "http://purl.obolibrary.org/obo/PATO_0001178", "meta" : { "definition" : { - "val" : "A structure quality inhering in a bearer by virtue of the bearer's being filled with air.", - "xrefs" : [ "PATOC:CVS" ] + "val" : "A resistance quality inhering in a bearer by virtue of the bearer's resistance to a stimulus.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "air-filled", + "val" : "resistant", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-07-05T02:55:10Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002377" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "inflated" + "lbl" : "resistant to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001045", + "id" : "http://purl.obolibrary.org/obo/PATO_0001179", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative power" + "lbl" : "obsolete immune" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000199", + "id" : "http://purl.obolibrary.org/obo/PATO_0001176", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -40595,114 +41162,83 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative consumption" + "lbl" : "obsolete deaf" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045066", + "id" : "http://purl.obolibrary.org/obo/PATO_0001177", "meta" : { - "definition" : { - "val" : "A susceptibility toward an external stimulus which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal susceptibility toward" + "lbl" : "obsolete blind" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045067", + "id" : "http://purl.obolibrary.org/obo/PATO_0001170", "meta" : { - "definition" : { - "val" : "A temperature which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal temperature" + "lbl" : "obsolete numerical value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045068", + "id" : "http://purl.obolibrary.org/obo/PATO_0001171", "meta" : { "definition" : { - "val" : "A tendency which is relatively normal or average", - "xrefs" : [ ] + "val" : "An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way.", + "xrefs" : [ "merriam-webster:merriam-webster" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001172" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal tendency" + "lbl" : "elastic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045069", + "id" : "http://purl.obolibrary.org/obo/PATO_0001185", "meta" : { "definition" : { - "val" : "A threshold which is relatively normal or average", - "xrefs" : [ ] + "val" : "A maturity quality inhering in a bearer by virtue of the bearer's indirect development, undergoing metamorphosis.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Larval" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "normal threshold" + "lbl" : "larval" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045062", + "id" : "http://purl.obolibrary.org/obo/PATO_0001186", "meta" : { "definition" : { - "val" : "A solubility which is relatively normal or average", - "xrefs" : [ ] + "val" : "A maturity quality inhering in a bearer by virtue of the bearer's being at the age immediately before puberty.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "normal solubility" + "lbl" : "prepubescent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000190", + "id" : "http://purl.obolibrary.org/obo/PATO_0001183", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -40713,106 +41249,117 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete gait" + "lbl" : "obsolete absolute response value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002370", + "id" : "http://purl.obolibrary.org/obo/RO_0001900", "meta" : { "definition" : { - "val" : "The number of time that a viviparous organism has given birth.", - "xrefs" : [ "wiki:http://en.wikipedia.org/wiki/Parity_(biology)" ] + "val" : "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/ROAndTime" + } ] + }, + "type" : "PROPERTY", + "lbl" : "temporal interpretation" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001901", + "meta" : { + "definition" : { + "val" : "\n\n## Elucidation\n\nThis is used when the statement/axiom is assumed to hold true 'eternally'\n\n## How to interpret (informal)\n\nFirst the \"atemporal\" FOL is derived from the OWL using the standard\ninterpretation. This axiom is temporalized by embedding the axiom\nwithin a for-all-times quantified sentence. The t argument is added to\nall instantiation predicates and predicates that use this relation.\n\n## Example\n\n Class: nucleus\n SubClassOf: part_of some cell\n\n forall t :\n forall n :\n instance_of(n,Nucleus,t)\n implies\n exists c :\n instance_of(c,Cell,t)\n part_of(n,c,t)\n\n## Notes\n\nThis interpretation is *not* the same as an at-all-times relation\n\n", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "axiom holds for all times" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001184", + "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-05-03T11:27:56Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "parity" + "lbl" : "obsolete maturity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045063", + "id" : "http://purl.obolibrary.org/obo/PATO_0001189", "meta" : { "definition" : { - "val" : "A speed which is relatively normal or average", - "xrefs" : [ ] + "val" : "A maturity quality inhering in a bearer by virtue of the bearer's being between the onset of puberty and maturity.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "normal speed" + "lbl" : "adolescent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000192", + "id" : "http://purl.obolibrary.org/obo/PATO_0001187", "meta" : { + "definition" : { + "val" : "A maturity quality inhering in a insect by virtue of the bearer's being in the chrysalis (cocoon) or post larval stage.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete locomotor_activity" + "lbl" : "pupal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045064", + "id" : "http://purl.obolibrary.org/obo/PATO_0001188", "meta" : { "definition" : { - "val" : "A strength which is relatively normal or average", - "xrefs" : [ ] + "val" : "A maturity quality inhering in a bearer by virtue of the bearer's being in an inactive stage in the development of some insects, between the larval and the pupal stages.", + "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "normal strength" + "lbl" : "prepupal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045065", + "id" : "http://purl.obolibrary.org/obo/PATO_0001181", "meta" : { - "definition" : { - "val" : "A fatigability which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute response" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001182", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal fatigability" + "lbl" : "obsolete relative response" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000191", + "id" : "http://purl.obolibrary.org/obo/PATO_0001180", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -40823,139 +41370,148 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete learning_and memory" + "lbl" : "obsolete relative response" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045037", + "id" : "http://purl.obolibrary.org/obo/PATO_0001196", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a normal or average extent.", - "xrefs" : [ ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the abdomen of an organism relative to another entity.", + "xrefs" : [ "PATOC:nw" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "anterior_ to", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "normal phosphorylation" + "lbl" : "ventral to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045038", + "id" : "http://purl.obolibrary.org/obo/PATO_0001197", "meta" : { - "definition" : { - "val" : "A photosensitivity which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "normal photosensitivity" + "lbl" : "obsolete modified direction" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045039", + "id" : "http://purl.obolibrary.org/obo/PATO_0001194", "meta" : { "definition" : { - "val" : "A degree of pigmentation quality which is relatively normal or average", - "xrefs" : [ ] + "val" : "A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "decreased responsivity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "hyporesponsive", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001192" } ] }, "type" : "CLASS", - "lbl" : "normal pigmentation" + "lbl" : "hyporesponsive to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002304", + "id" : "http://purl.obolibrary.org/obo/PATO_0001195", "meta" : { "definition" : { - "val" : "A quality of a process that has a value that is increased compared to normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located more centrally than another entity.", + "xrefs" : [ "PATOC:nw" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-16T06:53:08Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased process quality" + "lbl" : "proximal to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000125", + "id" : "http://purl.obolibrary.org/obo/PATO_0001198", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete unmodified direction" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001199", "meta" : { "definition" : { - "val" : "A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being narrow, with the two opposite margins parallel.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "mass" + "lbl" : "linear" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001457", + "id" : "http://purl.obolibrary.org/obo/PATO_0001192", "meta" : { "definition" : { - "val" : "A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation.", + "val" : "A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "sensitivity of occurrent", + "val" : "increased responsivity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "hyperresponsive", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001194" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sensitivity of a process" + "lbl" : "hyperresponsive to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001458", + "id" : "http://purl.obolibrary.org/obo/PATO_0001193", "meta" : { "definition" : { - "val" : "A sensitivity of a process quality inhering in a bearer by virtue of the bearer's unfolding in a location with or without oxygen.", + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the side relative to another entity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "sensitivity of occurrent to oxygen", + "val" : "lateral", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -40964,86 +41520,76 @@ } ] }, "type" : "CLASS", - "lbl" : "sensitivity of a process to oxygen" + "lbl" : "lateral to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000124", + "id" : "http://purl.obolibrary.org/obo/PATO_0001190", "meta" : { + "definition" : { + "val" : "A maturity quality inhering in a bearer by virtue the bearer's being not fully grown or developed.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative length" + "lbl" : "juvenile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002305", + "id" : "http://purl.obolibrary.org/obo/PATO_0001191", "meta" : { "definition" : { - "val" : "A quality of an object that has a value that is increased compared to normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the middle relative to another entity.", + "xrefs" : [ "PATOC:nw" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-16T06:54:01Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased object quality" + "lbl" : "medial to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001455", + "id" : "http://purl.org/dc/elements/1.1/source", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's dependence on oxygen.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001456" + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "dc-source" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "aerobic" + "type" : "PROPERTY", + "lbl" : "derived from resource" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002302", + "id" : "http://purl.obolibrary.org/obo/PATO_0002469", "meta" : { "definition" : { - "val" : "A quality of a process that has a value that is decreased compared to normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Structural quality inhereing in a bearer in which a joint has apposed bony surfaces united by fibrous tissue, permitting no movement; found only between bones.", + "xrefs" : [ "PATOC:WD" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-16T06:50:59Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T11:55:50Z" } ] }, "type" : "CLASS", - "lbl" : "decreased process quality" + "lbl" : "sutured to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000127", + "id" : "http://purl.obolibrary.org/obo/PATO_0001138", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -41054,50 +41600,56 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative mass" + "lbl" : "obsolete ig m concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001456", + "id" : "http://purl.obolibrary.org/obo/PATO_0001139", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's independence on oxygen.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001455" } ] }, "type" : "CLASS", - "lbl" : "anaerobic" + "lbl" : "obsolete urine glucose composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002303", + "id" : "http://purl.obolibrary.org/obo/PATO_0002467", "meta" : { "definition" : { - "val" : "A quality of an object that has a value that is decreased compared to normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer resembling a thin narrow strip.", + "xrefs" : [ "PATOC:WD" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002305" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T11:47:11Z" + } ] + }, + "type" : "CLASS", + "lbl" : "lathlike" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001136", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-16T06:51:54Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "decreased object quality" + "lbl" : "obsolete ig e concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000126", + "id" : "http://purl.obolibrary.org/obo/PATO_0001137", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -41108,104 +41660,102 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute mass" + "lbl" : "obsolete ig g concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002308", + "id" : "http://purl.obolibrary.org/obo/PATO_0002468", "meta" : { "definition" : { - "val" : "A triangular quality inhering in a bearer by virtue of the bearer's having all sides of unequal length.", - "xrefs" : [ "PATOC:JB" ] + "val" : "A structure quality inhering in a bearer by virtue of the bearer's being capable of swelling or stretching.", + "xrefs" : [ "PATOC:WD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T11:48:26Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-27T11:24:24Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "scalene triangular" + "lbl" : "distensible" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000129", + "id" : "http://purl.obolibrary.org/obo/PATO_0001130", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute weight" + "lbl" : "obsolete ratio value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002309", + "id" : "http://purl.obolibrary.org/obo/PATO_0002461", "meta" : { "definition" : { - "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a by virtue of the bearer's exhibiting a consistently sized and approximately round cross-section along its length, which is many times larger than its diameter.", - "xrefs" : [ "PATOC:DC" ] + "val" : "To bend or hang downwards due to loss of water", + "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that a fiber shaped object may take any circuitous or straight path through space (think of a length of string or rope)." + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-09-09T04:50:10Z" + "val" : "2013-04-09T06:06:14Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "fiber shaped" + "lbl" : "wilty" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000128", + "id" : "http://purl.obolibrary.org/obo/PATO_0002462", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer that has mass near a gravitational body.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Weight" ] + "val" : "A composition quality inhering in an bearer by virtue of the bearer's consisting of collagen.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T11:34:15Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "weight" + "lbl" : "collagenous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001459", + "id" : "http://purl.obolibrary.org/obo/PATO_0001131", "meta" : { - "definition" : { - "val" : "A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001460" } ] }, "type" : "CLASS", - "lbl" : "aerobic (for occurrence)" + "lbl" : "obsolete absolute ratio value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002306", + "id" : "http://purl.obolibrary.org/obo/PATO_0002460", "meta" : { "definition" : { - "val" : "A triangular quality inhering in a bearer by virtue of the bearer's having all sides of the same length.", - "xrefs" : [ "PATOC:JB" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer being smaller and contracted, expecially due to loss of moisture.", + "xrefs" : [ "PATOC:JL" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -41213,116 +41763,110 @@ "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-27T11:22:50Z" + "val" : "2013-04-09T06:05:18Z" } ] }, "type" : "CLASS", - "lbl" : "equilateral triangular" + "lbl" : "shriveled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002307", + "id" : "http://purl.obolibrary.org/obo/PATO_0002465", "meta" : { "definition" : { - "val" : "A triangular quality inhering in a bearer by virtue of the bearer's having two sides have the same length.", - "xrefs" : [ "PATOC:JB" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's resembling a prism.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "tent shaped", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-27T11:23:52Z" + "val" : "2013-09-15T11:44:03Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "isosceles triangular" + "lbl" : "prism shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001450", + "id" : "http://purl.obolibrary.org/obo/PATO_0001134", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete ig a concentration" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002466", "meta" : { "definition" : { - "val" : "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of extracellular fluid.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer resembling a keyhole.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "oedema", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "oedemic", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "oedematous", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "edemic", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "edema", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T11:45:53Z" } ] }, "type" : "CLASS", - "lbl" : "edematous" + "lbl" : "keyhole shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001453", + "id" : "http://purl.obolibrary.org/obo/PATO_0001135", "meta" : { - "definition" : { - "val" : "An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "detached", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "detached from" + "lbl" : "obsolete ig d concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002300", + "id" : "http://purl.obolibrary.org/obo/PATO_0002463", "meta" : { "definition" : { - "val" : "A quality that has a value that is increased compared to normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of some aspect of the bearer extending to the position of another entity.", + "xrefs" : [ "PATOC:WD" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-16T06:39:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T11:41:00Z" } ] }, "type" : "CLASS", - "lbl" : "increased quality" + "lbl" : "extends to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000121", + "id" : "http://purl.obolibrary.org/obo/PATO_0001132", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -41333,9 +41877,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative height" + "lbl" : "obsolete relative ratio value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000120", + "id" : "http://purl.obolibrary.org/obo/PATO_0001133", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -41346,65 +41890,44 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute height" + "lbl" : "obsolete immunoglobulin concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002301", + "id" : "http://purl.obolibrary.org/obo/PATO_0002464", "meta" : { "definition" : { - "val" : "A quality that has a value that is decreased compared to normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of some aspect of the bearer extending past the position of another entity.", + "xrefs" : [ "PATOC:WD" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-16T06:40:15Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002300" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T11:42:15Z" } ] }, "type" : "CLASS", - "lbl" : "decreased quality" + "lbl" : "extends beyond" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001454", + "id" : "http://purl.obolibrary.org/obo/PATO_0001149", "meta" : { - "definition" : { - "val" : "A sensitivity quality inhering in a bearer by virtue of the bearer's dependence on oxygen.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "sensitivity to oxygen" + "lbl" : "obsolete susceptibility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001451", + "id" : "http://purl.obolibrary.org/obo/PATO_0001147", "meta" : { - "definition" : { - "val" : "An extended swelling in plant organs caused primarily by an excessive accumulation of water.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] - }, - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "oedematous", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "oedemic", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "edemic", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -41414,595 +41937,612 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete edematous (sensu botany)" + "lbl" : "obsolete absolute resistance value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000123", + "id" : "http://purl.obolibrary.org/obo/PATO_0002478", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented transversely relative to the long axis of the bearer.", + "xrefs" : [ "PATOC:DS" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T12:29:15Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute length" + "lbl" : "transversely striated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000122", + "id" : "http://purl.obolibrary.org/obo/PATO_0002479", "meta" : { "definition" : { - "val" : "A 1-D extent quality which is equal to the distance between two points.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented obliquely relative to the long axis of the bearer.", + "xrefs" : [ "PATOC:DS" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T12:29:42Z" } ] }, "type" : "CLASS", - "lbl" : "length" + "lbl" : "obliquely striated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001452", + "id" : "http://purl.obolibrary.org/obo/PATO_0001148", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000141" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete relative resistance value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045033", + "id" : "http://purl.obolibrary.org/obo/UBERON_0001062", "meta" : { "definition" : { - "val" : "An odor quality of having relatively normal or average odor.", - "xrefs" : [ ] + "val" : "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species.", + "xrefs" : [ "http://orcid.org/0000-0001-9114-8737", "FMA:62955" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/uberon/core#upper_level" ], + "xrefs" : [ { + "val" : "NCIT:C12219" + }, { + "val" : "HAO:0000000" + }, { + "val" : "TAO:0100000" + }, { + "val" : "CARO:0000000" + }, { + "val" : "FBbt:10000000" + }, { + "val" : "AAO:0010841" + }, { + "val" : "EHDAA2:0002229" + }, { + "val" : "AEO:0000000" + }, { + "val" : "FMA:62955" + }, { + "val" : "WBbt:0000100" + }, { + "val" : "ZFA:0100000" + }, { + "val" : "XAO:0000000" + }, { + "val" : "TGMA:0001822" + }, { + "val" : "BIRNLEX:6" + }, { + "val" : "BILA:0000000" + }, { + "val" : "FBbt_root:00000000" + }, { + "val" : "UMLS:C1515976" + }, { + "val" : "MA:0000001" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, + "type" : "CLASS", + "lbl" : "anatomical entity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002472", + "meta" : { + "definition" : { + "val" : "A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position.", + "xrefs" : [ "PATOC:NV" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "val" : "2013-09-15T12:05:06Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002471" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "normal odor" + "lbl" : "decreased velocity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045034", + "id" : "http://purl.obolibrary.org/obo/PATO_0001141", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete ig a concentration value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002473", "meta" : { "definition" : { - "val" : "An osmolality which is relatively normal or average odor.", - "xrefs" : [ ] + "val" : "A disposition inhering in a tumour by virtue of the bearer's disposition to spontaneously arise.", + "xrefs" : [ "PATOC:NV" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "val" : "2013-09-15T12:07:08Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal osmolality" + "lbl" : "neoplastic, spontaneous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045035", + "id" : "http://purl.obolibrary.org/obo/PATO_0001142", "meta" : { - "definition" : { - "val" : "An osmolarity which is relatively normal or average odor.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "normal osmolarity" + "lbl" : "obsolete ig d concentration value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045036", + "id" : "http://purl.obolibrary.org/obo/PATO_0002470", "meta" : { "definition" : { - "val" : "A permeability which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A morphological quality between two bearers inhering that one bearer is subject to change the nature, function, or condition of itself to become the other.", + "xrefs" : [ "PATOC:LC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T12:01:57Z" } ] }, "type" : "CLASS", - "lbl" : "normal permeability" + "lbl" : "transformed to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045030", + "id" : "http://purl.obolibrary.org/obo/PATO_0002471", "meta" : { "definition" : { - "val" : "A mass which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position.", + "xrefs" : [ "PATOC:NV" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002472" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "val" : "2013-09-15T12:03:45Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "normal mass" + "lbl" : "increased velocity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045031", + "id" : "http://purl.obolibrary.org/obo/PATO_0001140", "meta" : { - "definition" : { - "val" : "A density which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete immunoglobulin concentration value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001145", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal mass density" + "lbl" : "obsolete ig m concentration value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045032", + "id" : "http://purl.obolibrary.org/obo/PATO_0002476", "meta" : { "definition" : { - "val" : "A mobility which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A position quality inhering in a bearer by virtue of the bearer's forming the end of another entity.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "val" : "2013-09-15T12:18:08Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal mobility" + "lbl" : "terminal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045048", + "id" : "http://purl.obolibrary.org/obo/PATO_0002477", "meta" : { "definition" : { - "val" : "A sensitivity to irradiation which is relatively normal or average", - "xrefs" : [ ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's disposition to breaks without significant deformation (strain) when subjected to stress.", + "xrefs" : [ "wikipedia:http://en.wikipedia.org/wiki/Brittleness" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "val" : "2013-09-15T12:25:03Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "normal sensitivity to irradiation" + "lbl" : "brittle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045049", + "id" : "http://purl.obolibrary.org/obo/PATO_0001146", "meta" : { - "definition" : { - "val" : "A sensitivity toward an external stimulus which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "normal sensitivity toward" + "lbl" : "obsolete resistance value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002315", + "id" : "http://purl.obolibrary.org/obo/PATO_0002474", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's resembling the end of a brush with a multitude of bristles.", - "xrefs" : [ "PATOC:BF" ] + "val" : "A flavor quality inhering in a bearer by virtue of the bearer's having an acrid, sharp, or disagreeable flavor.", + "xrefs" : [ "PATOC:LC" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-03T03:59:59Z" + "val" : "2013-09-15T12:09:15Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "brush-like shape" + "lbl" : "bitter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001468", + "id" : "http://purl.obolibrary.org/obo/PATO_0001143", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the back or upper surface of an organism.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "curved posterior (human torso)", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "curved superior (human head)", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "curved dorsal" + "lbl" : "obsolete ig e concentration value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000136", + "id" : "http://purl.obolibrary.org/obo/PATO_0002475", "meta" : { "definition" : { - "val" : "A morphological quality pertaining to the degree to which an object contains an opening, aperture, orifice or vent.", - "xrefs" : [ "PATOC:CJM", "PATOC:GVG" ] + "val" : "A position quality inhering in a bearer by virtue of the bearer's existing near the end of another entity.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T12:17:41Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "closure" + "lbl" : "subterminal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001469", + "id" : "http://purl.obolibrary.org/obo/PATO_0001144", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the abdomen of an organism.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "curved anterior (human torso)", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "curved inferior (human head)", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "curved ventral" + "lbl" : "obsolete ig g concentration value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002316", + "id" : "http://purl.obolibrary.org/obo/PATO_0002489", "meta" : { "definition" : { - "val" : "Being separate or discrete from other skeletal elements.", + "val" : "Overlap with quality inhering in a bearer by virtue of the bearer's being positioned under another entity so as to be covered by some portion of it.", "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "free", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-03T04:17:08Z" + "val" : "2013-10-10T04:13:04Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "autogenous" + "lbl" : "overlapped by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000135", + "id" : "http://purl.obolibrary.org/obo/PATO_0001158", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete relative_angle" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000138", - "meta" : { - "basicPropertyValues" : [ { + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute orientation" + "lbl" : "obsolete relative concentration value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002313", + "id" : "http://purl.obolibrary.org/obo/PATO_0001159", "meta" : { "definition" : { - "val" : "Having or resembling the shape of a telescope.", - "xrefs" : [ "PATOC:BF" ] + "val" : "A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-03T03:49:26Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "telescopic" + "lbl" : "concentrated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001466", + "id" : "http://purl.obolibrary.org/obo/PATO_0001152", "meta" : { "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the front of an organism.", + "val" : "A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "curved superior (human torso)", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "curved anterior", + "val" : "susceptible", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001153" } ] }, "type" : "CLASS", - "lbl" : "curved rostral" + "lbl" : "susceptible toward" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002314", + "id" : "http://purl.obolibrary.org/obo/PATO_0002483", "meta" : { "definition" : { - "val" : "Having the nature or characteristic of, a ligament; composed of the tissue proper to ligaments.", - 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"val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the part of the body from which the tail arises.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of an inverted letter V.", + "xrefs" : [ "PATOC:WD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "curved posterior", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "curved inferior (human torso)", + "pred" : "hasBroadSynonym", + "val" : "chevron shaped", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "curved caudal" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000137", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - 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"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001152" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-12T12:47:48Z" } ] }, "type" : "CLASS", - "lbl" : "squircle" + "lbl" : "insusceptible toward" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000139", + "id" : "http://purl.obolibrary.org/obo/PATO_0001150", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative orientation" + "lbl" : "obsolete absolute susceptibility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002317", + "id" : "http://purl.obolibrary.org/obo/PATO_0002481", "meta" : { "definition" : { - "val" : "A convex quadrilateral is a parallelogram if and only if any one of the following statements are true:\n1. Each diagonal divides the quadrilateral into two congruent triangles with the same orientation.\n2. The opposite sides are congruent in pairs.\n3. The diagonals bisect each other.\n4. The opposite angles are congruent in pairs.\n5. The sum of the squares of the sides equals the sum of the squares of the diagonals. (This is the parallelogram law)\n6.It possesses rotational symmetry.\n7.One pair of opposite sides are parallel and congruent.\n8.Two pairs of adjacent angles are supplementary.", - "xrefs" : [ "wikipedia:Parallelogram" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a slanting direction or position : neither perpendicular nor parallel.", + "xrefs" : [ "merriam-wester:http://www.merriam-webster.com/dictionary/oblique" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-12T12:33:07Z" + "val" : "2013-09-30T05:49:50Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "parallelogram" + "lbl" : "oblique orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002318", + "id" : "http://purl.obolibrary.org/obo/PATO_0002482", "meta" : { "definition" : { - "val" : "A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt", - "xrefs" : [ "wiktionary:superellipse" ] + "val" : "Shape quality inhering in a bearer by virtue of the bearer exhibiting a narrow and elongate opening.", + "xrefs" : [ "PATOC:WD" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "Lamé curve", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-12T12:45:16Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-30T05:51:39Z" } ] }, "type" : "CLASS", - "lbl" : "superelliptic" + "lbl" : "slit-like" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001460", + "id" : "http://purl.obolibrary.org/obo/PATO_0001151", "meta" : { - "definition" : { - "val" : "A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001459" } ] }, "type" : "CLASS", - 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"lbl" : "surface tension" + "lbl" : "single organismal process quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000130", + "id" : "http://purl.obolibrary.org/obo/PATO_0001156", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -42013,81 +42553,103 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative weight" + "lbl" : "obsolete relative concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000132", + "id" : "http://purl.obolibrary.org/obo/PATO_0001157", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete absolute concentration value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001464", + "id" : "http://purl.obolibrary.org/obo/PATO_0002488", "meta" : { "definition" : { - "val" : "A quality that is equal to the potential energy per unit charge associated with a static (time-invariant) electric field, also called the electrostatic potential.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Electric_potential" ] + "val" : "Overlap with quality inhering in a bearer by virtue of the bearer's being positioned over another entity so as to cover some portion of it.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-10-10T04:12:22Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "electric potential" + "lbl" : "overlapping" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002311", + "id" : "http://purl.obolibrary.org/obo/PATO_0001154", "meta" : { "definition" : { - "val" : "Having a fringe or border of hairlike or fingerlike projections.", - "xrefs" : [ "PATO:WS" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width.", + "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002364" + } ] + }, + "type" : "CLASS", + "lbl" : "elongated" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002485", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's possessing two sides that are at the same continuous distance relative to each other.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-09-22T03:52:11Z" + "val" : "2013-10-10T03:58:37Z" } ] }, "type" : "CLASS", - "lbl" : "fimbriated" + "lbl" : "parallel-sided" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002312", + "id" : "http://purl.obolibrary.org/obo/PATO_0002486", "meta" : { "definition" : { - "val" : "Consisting of segments or similar parts arranged in a longitudinal series.", - "xrefs" : [ "OED:" ] + "val" : "A quality inhering in a process by virtue of that process having two or more organisms as participants.", + "xrefs" : [ "PATOC:DS" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-03T03:42:23Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "2013-10-10T04:08:44Z" } ] }, "type" : "CLASS", - "lbl" : "segmented" + "lbl" : "multi-organismal process quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000131", + "id" : "http://purl.obolibrary.org/obo/PATO_0001155", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -42098,421 +42660,424 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative size" + "lbl" : "obsolete absolute concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001465", + "id" : "http://purl.obolibrary.org/obo/PATO_0002480", "meta" : { "definition" : { - "val" : "A malformed quality inhering in a bearer by virtue of the bearer's all-encompassing, grotesque morphological defects.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in an bearer by virtue of the bearer's possessing only minor levels of ossification.", + "xrefs" : [ "PATOC:AD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-30T05:47:07Z" } ] }, "type" : "CLASS", - 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"id" : "http://purl.obolibrary.org/obo/PATO_0002310", + "id" : "http://purl.obolibrary.org/obo/PATO_0002495", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being strong, thick or sturdy.", - "xrefs" : [ "PATOC:BF" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally.", + "xrefs" : [ "PATOC:WD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "dorsally directed", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002494" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-09-20T06:23:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-10-10T05:15:24Z" } ] }, "type" : "CLASS", - "lbl" : "robust" + "lbl" : "dorsal orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045044", + "id" : "http://purl.obolibrary.org/obo/PATO_0001164", "meta" : { "definition" : { - "val" : "A pressure which is relatively normal or average", - "xrefs" : [ ] + "val" : "A physical quality which inheres in a bearer by virtue of the bearer's exhibiting density.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - 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}, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "normal position" + "lbl" : "anteroventral orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045041", + "id" : "http://purl.obolibrary.org/obo/PATO_0001167", "meta" : { "definition" : { - "val" : "An angle which is relatively normal or average", - "xrefs" : [ ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001168" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal angle to" + "lbl" : "damaged" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045042", + "id" : "http://purl.obolibrary.org/obo/PATO_0002498", "meta" : { "definition" : { - "val" : "A distribution which is relatively normal or average", - "xrefs" : [ ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed medially.", + "xrefs" : [ "PATOC:WD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "normal distribution" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045043", - "meta" : { - "definition" : { - "val" : "An elevation which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "normal elevation" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045019", - "meta" : { - "definition" : { - "val" : "A female receptivity which is relatively normal or average.", + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "medially directed", "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "val" : "2013-10-10T05:17:30Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal female receptivity" + "lbl" : "medial orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045015", + "id" : "http://purl.obolibrary.org/obo/PATO_0002499", "meta" : { "definition" : { - "val" : "An efficiency which is relatively normal or average.", - "xrefs" : [ ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteriorly.", + "xrefs" : [ "PATOC:WD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "posteriorly directed", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "val" : "2013-10-10T05:18:21Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "normal efficiency" + "lbl" : "posterior orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045016", + "id" : "http://purl.obolibrary.org/obo/PATO_0001168", "meta" : { "definition" : { - "val" : "An elasticity which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled.", + "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001167" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "normal elasticity" + "lbl" : "undamaged" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045017", + "id" : "http://purl.obolibrary.org/obo/PATO_0002496", "meta" : { "definition" : { - "val" : "A fecundity which is relatively normal or average.", - "xrefs" : [ ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsolaterally.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "dorsolaterally directed", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "val" : "2013-10-10T05:16:04Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "normal fecundity" + "lbl" : "dorsolateral orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045018", + "id" : "http://purl.obolibrary.org/obo/PATO_0001165", "meta" : { - "definition" : { - "val" : "A female fertility which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal female fertility" + "lbl" : "obsolete urine enzyme composition value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002326", + "id" : "http://purl.obolibrary.org/obo/PATO_0002497", "meta" : { "definition" : { - "val" : "An orientation inhering in a bearer by virtue of the bearer's placement at an angle.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed laterally.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "laterally directed", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-10-10T05:16:45Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-11-23T12:06:09Z" } ] }, "type" : "CLASS", - "lbl" : "angle" + "lbl" : "lateral orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000147", + "id" : "http://purl.obolibrary.org/obo/PATO_0001166", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -42523,63 +43088,68 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute temperature" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001479", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001852" - } ] - }, - "type" : "CLASS" + "lbl" : "obsolete urine enzyme composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002327", + "id" : "http://purl.obolibrary.org/obo/PATO_0002490", "meta" : { "definition" : { - "val" : "An angle which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteriorly.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "anteriorly directly", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002328" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-11-23T12:06:38Z" + "val" : "2013-10-10T05:11:26Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "increased angle to" + "lbl" : "anterior orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000146", + "id" : "http://www.geneontology.org/formats/oboInOwl#SubsetProperty", + "type" : "PROPERTY", + "lbl" : "subset_property" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002491", "meta" : { "definition" : { - "val" : "A physical quality of the thermal energy of a system.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "anterodorsally directed", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002526" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-10-10T05:12:15Z" } ] }, "type" : "CLASS", - "lbl" : "temperature" + "lbl" : "anterodorsal orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000149", + "id" : "http://purl.obolibrary.org/obo/PATO_0001160", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -42590,89 +43160,73 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative temperature" + "lbl" : "obsolete unconcentrated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001477", + "id" : "http://purl.obolibrary.org/obo/PATO_0001578", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being drawn in or pulled back from any given point.", - "xrefs" : [ "Dictionary.com:Dictionary.com" ] + "val" : "A permeability which is relatively low.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasBroadSynonym", - "val" : "moved", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "retruded", + "pred" : "hasExactSynonym", + "val" : "low permeability", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001577" } ] }, "type" : "CLASS", - "lbl" : "retracted" + "lbl" : "decreased permeability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002324", + "id" : "http://purl.obolibrary.org/obo/PATO_0000246", "meta" : { - "definition" : { - "val" : "The temporal relation between the end of the process with respect to a reference process.", - "xrefs" : [ "PATOC:LC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "extent", - "xrefs" : [ "GOC:CJM" ] + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "hasRelatedSynonym", - "val" : "completeness", - "xrefs" : [ "GOC:CJM" ] - } ], + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete postural reflex" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000245", + "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-11-23T11:46:00Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "offset quality" + "lbl" : "obsolete pinna reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002325", + "id" : "http://purl.obolibrary.org/obo/PATO_0001579", "meta" : { "definition" : { - "val" : "The temporal relation between the start of the process with respect to a reference process.", - "xrefs" : [ "PATOC:LC" ] + "val" : "A physical quality that is the ability to contract or shrink.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "initiation", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-11-23T11:47:34Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "onset quality" + "lbl" : "contractility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000148", + "id" : "http://purl.obolibrary.org/obo/PATO_0000248", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -42683,237 +43237,161 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete body temperature" + "lbl" : "obsolete pupillary reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001478", + "id" : "http://purl.obolibrary.org/obo/PATO_0001576", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being broken down; caved in.", - "xrefs" : [ "Dictionary.com:Dictionary.com" ] + "val" : "A pressure which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high pressure", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001575" } ] }, "type" : "CLASS", - "lbl" : "collapsed" + "lbl" : "increased pressure" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002328", + "id" : "http://purl.obolibrary.org/obo/PATO_0001577", "meta" : { "definition" : { - "val" : "An angle which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A permeability which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high permeability", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002327" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-11-23T12:06:54Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001578" } ] }, "type" : "CLASS", - "lbl" : "decreased angle to" + "lbl" : "increased permeability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002329", + "id" : "http://purl.obolibrary.org/obo/PATO_0000247", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's exhibiting a upward bending of its leaves or other plant parts.", - "xrefs" : [ "PATOC:DS" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T11:40:23Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "hyponastic" + "lbl" : "obsolete proboscis extension reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001471", + "id" : "http://purl.obolibrary.org/obo/PATO_0000249", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001665" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - } ] - }, - "type" : "CLASS" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001472", - "meta" : { - "definition" : { - "val" : "A depth which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "shallow", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "low depth", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001692" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001596" } ] }, "type" : "CLASS", - "lbl" : "decreased depth" + "lbl" : "obsolete righting reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000141", + "id" : "http://purl.obolibrary.org/obo/PATO_0001570", "meta" : { "definition" : { - "val" : "A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality of a process inhering in a bearer by virtue of the bearer's having fewer processual parts.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "relational structural quality", - "xrefs" : [ ] - }, { - "pred" : "hasBroadSynonym", - "val" : "conformation", - "xrefs" : [ "VT:1000738" ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001452" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "structure" + "lbl" : "having decreased processual parts" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001470", + "id" : "http://purl.obolibrary.org/obo/GO_0009892", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity.", - "xrefs" : [ "PATOC:nw" ] + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", + "xrefs" : [ "GOC:go_curators" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "proportionality", + "val" : "down regulation of metabolic process", "xrefs" : [ ] }, { - "pred" : "hasExactSynonym", - "val" : "ratio", + "pred" : "hasNarrowSynonym", + "val" : "inhibition of organismal metabolic process", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "rate", + "pred" : "hasExactSynonym", + "val" : "negative regulation of organismal metabolism", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "quotient", + "val" : "negative regulation of metabolism", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "proportion", + "val" : "downregulation of metabolic process", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Examples: height to weight; brain size to body size. These could all be children of proportionality. Proportions can be measured as ratios. Some measures may be dimensionless. Not all ratios measure proportionality, eg m/s measures velocity which is not a proportion in the sense defined above, it is a quality in its own right." - } ] - }, - "type" : "CLASS", - "lbl" : "proportionality to" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000140", - "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "relational spatial quality", + "pred" : "hasNarrowSynonym", + "val" : "negative regulation of multicellular organismal metabolic process", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "location", + "val" : "down-regulation of metabolic process", "xrefs" : [ ] }, { - "pred" : "hasExactSynonym", - "val" : "placement", + "pred" : "hasNarrowSynonym", + "val" : "inhibition of metabolic process", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001631" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001032" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "GO:0044252" } ] }, "type" : "CLASS", - "lbl" : "position" + "lbl" : "negative regulation of metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001475", + "id" : "http://purl.obolibrary.org/obo/PATO_0001571", "meta" : { "definition" : { - "val" : "A position which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A size quality inhering in a bearer by virtue of the bearer's being made wider or larger in all dimensions.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "high position", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001476" } ] }, "type" : "CLASS", - "lbl" : "increased position" + "lbl" : "dilated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000143", + "id" : "http://purl.obolibrary.org/obo/PATO_0000240", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -42924,72 +43402,82 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete addictive substance" + "lbl" : "obsolete contact righting reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002322", + "id" : "http://purl.obolibrary.org/obo/GO_0009893", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", + "xrefs" : [ "GOC:go_curators" ] + }, + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of metabolic process", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "hasExactSynonym", + "val" : "up-regulation of metabolic process", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-12T12:51:19Z" + "pred" : "hasExactSynonym", + "val" : "positive regulation of metabolism", + "xrefs" : [ ] }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002321" - } ] - }, - "type" : "CLASS", - "lbl" : "hyperelliptic" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002323", - "meta" : { - "definition" : { - "val" : "A temporal distribution pattern of process occurrences within a regulation/reference process.", - "xrefs" : [ "PATOC:LC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-11-22T01:12:28Z" + "pred" : "hasNarrowSynonym", + "val" : "up-regulation of organismal metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "positive regulation of organismal metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of organismal metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "positive regulation of multicellular organismal metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of metabolic process", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of metabolic process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044253" } ] }, "type" : "CLASS", - "lbl" : "temporal distribution quality" + "lbl" : "positive regulation of metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001476", + "id" : "http://purl.obolibrary.org/obo/PATO_0001574", "meta" : { "definition" : { - "val" : "A positional which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's motion characteristic.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "low position", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001475" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased position" + "lbl" : "flow rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000142", + "id" : "http://purl.obolibrary.org/obo/PATO_0000242", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -43000,35 +43488,11 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete substance" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002320", - "meta" : { - "definition" : { - "val" : "A superelptic shape inhering in a bearer by virtue of the bearer's shape resembling a diamond.", - "xrefs" : [ "PATO:WC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-12T12:49:06Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "diamond shaped" + "lbl" : "obsolete flinch reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000145", + "id" : "http://purl.obolibrary.org/obo/PATO_0000241", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a liquid; PATO:0001548 '" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { @@ -43037,593 +43501,555 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete liquid substance" + "lbl" : "obsolete corneal reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001473", + "id" : "http://purl.obolibrary.org/obo/PATO_0001575", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being present in two copies.", - "xrefs" : [ "Dictionary.com:Dictionary.com" ] + "val" : "A pressure which is relatively low.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "doubled", + "val" : "low pressure", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001576" } ] }, "type" : "CLASS", - "lbl" : "duplicated" + "lbl" : "decreased pressure" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000144", + "id" : "http://purl.obolibrary.org/obo/PATO_0001572", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001784" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a solid; 'PATO:0001546'" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "obsolete solid substance" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0071944", + "id" : "http://purl.obolibrary.org/obo/PATO_0000244", "meta" : { - "definition" : { - "val" : "The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures.", - "xrefs" : [ "GOC:mah" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "midori" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-10-04T01:51:47Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cell periphery" + "lbl" : "obsolete ocular reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001474", + "id" : "http://purl.obolibrary.org/obo/PATO_0001573", "meta" : { "definition" : { - "val" : "An oriented quality inhering in a bearer by virtue of the bearer's axis being positioned forward.", - "xrefs" : [ "bdid:bdid" ] + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's having equal dimensions or measurements.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "anteverted" + "lbl" : "isometrical" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002321", + "id" : "http://purl.obolibrary.org/obo/PATO_0000243", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002322" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-12T12:50:59Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "hypoelliptic" + "lbl" : "obsolete lordosis reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045011", + "id" : "http://purl.obolibrary.org/obo/PATO_0000257", "meta" : { - "definition" : { - "val" : "A contractility which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "normal contractility" + "lbl" : "obsolete absolute taste_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045012", + "id" : "http://purl.obolibrary.org/obo/PATO_0001589", "meta" : { "definition" : { - "val" : "A coordination which is relatively normal or average.", - "xrefs" : [ ] + "val" : "Increased, intensified.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", + "val" : "PATO:0002017" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Obsoleted because it used to be a child of behavioral quality, which really meant increased magnitude of a given behavior. Now this can be done by using increased magnitude with another quality." } ] }, "type" : "CLASS", - "lbl" : "normal coordination" + "lbl" : "obsolete enhanced" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045013", + "id" : "http://purl.obolibrary.org/obo/PATO_0000256", "meta" : { - "definition" : { - "val" : "A curvature which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "normal curvature" + "lbl" : "obsolete taste type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045014", + "id" : "http://purl.obolibrary.org/obo/PATO_0001587", "meta" : { "definition" : { - "val" : "A distance which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A variability of rate which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high variability of rate", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001588" } ] }, "type" : "CLASS", - "lbl" : "normal distance" + "lbl" : "increased variability of rate" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0051098", + "id" : "http://purl.obolibrary.org/obo/PATO_0000259", "meta" : { - "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.", - "xrefs" : [ "GOC:ai" ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "regulation of binding" + "lbl" : "obsolete visual_ability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045010", + "id" : "http://purl.obolibrary.org/obo/PATO_0000258", "meta" : { - "definition" : { - "val" : "A concentration which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal concentration" + "lbl" : "obsolete relative taste_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0051099", + "id" : "http://purl.obolibrary.org/obo/PATO_0001588", "meta" : { "definition" : { - "val" : "Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.", - "xrefs" : [ "GOC:ai" ] + "val" : "A variability of rate which is relatively low.", + "xrefs" : [ "PATO:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "up regulation of binding", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "upregulation of binding", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "stimulation of binding", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "activation of binding", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "up-regulation of binding", + "val" : "low variability of rate", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001587" } ] }, "type" : "CLASS", - "lbl" : "positive regulation of binding" + "lbl" : "decreased variability of rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045026", + "id" : "http://purl.obolibrary.org/obo/PATO_0001581", "meta" : { "definition" : { - "val" : "A life span which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A contractility which is relatively low.", + "xrefs" : [ "PATO:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low contractility", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001580" } ] }, "type" : "CLASS", - "lbl" : "normal life span" + "lbl" : "decreased contractility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045027", + "id" : "http://purl.obolibrary.org/obo/PATO_0001582", "meta" : { "definition" : { - "val" : "A magnetism which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A spatial quality inhering in an inactive muscle or muscle fibers by virtue of the bearer's exhibiting gradual lengthening.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "GO has now relevant relation terms which should be used instead." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "normal magnetism" + "lbl" : "obsolete relaxational quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045028", + "id" : "http://purl.obolibrary.org/obo/PATO_0000251", "meta" : { - "definition" : { - "val" : "A male fertility which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal male fertility" + "lbl" : "obsolete startle reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045029", + "id" : "http://purl.obolibrary.org/obo/PATO_0001580", "meta" : { "definition" : { - "val" : "A male receptivity which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A contractility which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high contractility", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001581" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal male receptivity" + "lbl" : "increased contractility" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0110165", + "id" : "http://purl.obolibrary.org/obo/PATO_0000250", "meta" : { - "definition" : { - "val" : "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex.", - "xrefs" : [ "GOC:kmv" ] - }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2019-08-12T18:01:37Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "kmv" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cellular anatomical entity" + "lbl" : "obsolete spinal reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000158", + "id" : "http://purl.obolibrary.org/obo/PATO_0000253", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000057" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete swallowing reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001006", + "id" : "http://purl.obolibrary.org/obo/PATO_0001585", "meta" : { + "definition" : { + "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to transmit of an entity through a medium.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Examples could be heat or electricity or sound." } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute latency" + "lbl" : "conductivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002337", + "id" : "http://purl.obolibrary.org/obo/PATO_0001586", "meta" : { "definition" : { - "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; characterized with an egg-shaped form crossed with a lance-head shaped form.", - "xrefs" : [ "PATOC:DD" ] + "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits rate variation or change.", + "xrefs" : [ "PATO:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T02:43:15Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "lance-ovate" + "lbl" : "variability of rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001007", + "id" : "http://purl.obolibrary.org/obo/PATO_0000252", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative latency" + "lbl" : "obsolete suckling reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002338", + "id" : "http://purl.obolibrary.org/obo/PATO_0001583", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle together forming three angles; attached at the broad end.", - "xrefs" : [ "PATOC:DD" ] + "val" : "A variability which is relatively low.", + "xrefs" : [ "PATO:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low variability", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T02:46:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001584" } ] }, "type" : "CLASS", - "lbl" : "lanceolate-triangular" + "lbl" : "decreased variability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000157", + "id" : "http://purl.obolibrary.org/obo/PATO_0000255", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute temporal" + "lbl" : "obsolete taste_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001488", + "id" : "http://purl.obolibrary.org/obo/PATO_0001584", "meta" : { "definition" : { - "val" : "A cellular quality inhering in a cell by virtue of whether the bearer exhibits the ability to move spontaneously.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A variability which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high variability", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001583" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Term should be obsoleted and the GO term cellular motility should be used instead." } ] }, "type" : "CLASS", - "lbl" : "cellular motility" + "lbl" : "increased variability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002335", + "id" : "http://purl.obolibrary.org/obo/PATO_0000254", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being dome-shaped.", - "xrefs" : [ "PATOC:dd" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T02:32:14Z" } ] }, "type" : "CLASS", - "lbl" : "tholiform" + "lbl" : "obsolete vibrissae reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001004", + "id" : "http://purl.obolibrary.org/obo/GO_0019222", "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", + "xrefs" : [ "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "regulation of organismal metabolic process", + "xrefs" : [ "GOC:tb" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "regulation of multicellular organismal metabolic process", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044246" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute alternation value" + "lbl" : "regulation of metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001005", + "id" : "http://purl.obolibrary.org/obo/GO_0019220", "meta" : { "definition" : { - "val" : "A time quality inhering in a bearer by virtue of the time it elapses for the bearer to respond to a stimulus.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates.", + "xrefs" : [ "GOC:go_curators" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of phosphate metabolism", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This class is a candidate for obsoletion. The definition is not clear, and the placement under \"delayed\" is not consistent with the definition." + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "latency" + "lbl" : "regulation of phosphate metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002336", + "id" : "http://purl.obolibrary.org/obo/PATO_0000268", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having triangular faces that meet at a common point and containing a polygonal shaped base.", - "xrefs" : [ "PATOC:DD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T02:35:02Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "pyramidal" + "lbl" : "obsolete absolute visual threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000159", + "id" : "http://purl.obolibrary.org/obo/PATO_0000267", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute incidence" + "lbl" : "obsolete relative visual_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001489", + "id" : "http://purl.obolibrary.org/obo/PATO_0001598", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's extending out above or beyond a surface or boundary.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "protruding", + "xrefs" : [ ] }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001433" + "pred" : "hasExactSynonym", + "val" : "relational protruding quality", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001644" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "protruding" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002339", + "id" : "http://purl.obolibrary.org/obo/PATO_0001599", "meta" : { "definition" : { - "val" : "A quality of being covered with stiff or rough hairs.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An oriented quality inhering in a bearer by virtue of the bearer's being relocated around an axis.", + "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "rotation", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T02:51:37Z" } ] }, "type" : "CLASS", - "lbl" : "hispid" + "lbl" : "rotated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001008", + "id" : "http://purl.obolibrary.org/obo/PATO_0000269", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -43634,9 +44060,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute latency value" + "lbl" : "obsolete relative visual threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001009", + "id" : "http://purl.obolibrary.org/obo/PATO_0000260", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -43647,184 +44073,190 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative latency value" + "lbl" : "obsolete visual_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000150", + "id" : "http://purl.obolibrary.org/obo/PATO_0001592", "meta" : { "definition" : { - "val" : "A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A curvature which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001593" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "texture" + "lbl" : "increased curvature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001482", + "id" : "http://purl.obolibrary.org/obo/PATO_0001593", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line.", - "xrefs" : [ "Dictionary.com:Dictionary.com" ] + "val" : "A curvature which is relatively low.", + "xrefs" : [ "PATO:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001592" } ] }, "type" : "CLASS", - "lbl" : "prominent" + "lbl" : "decreased curvature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001483", + "id" : "http://purl.obolibrary.org/obo/PATO_0001590", "meta" : { "definition" : { - "val" : "Absence of an organ, tissue or cell due to failure to develop from a primordium or precursor cell.", - "xrefs" : [ "PATOC:GVG", "PATOC:PortlandMeetingFeb2015" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's coinciding spatially, partially or wholly with another entity.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "undeveloped", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "aplasia", + "val" : "overlap", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "With aplasia, the primordium or precursor develops, but does not proceed in its development to a mature structure" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "aplastic" + "lbl" : "overlap with" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002330", + "id" : "http://purl.obolibrary.org/obo/PATO_0000262", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being extended along a straight line, and is shaped like a reversed lance-point, with the tapering point attached to the leafstalk.", - "xrefs" : [ "PATOC:PG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T11:57:54Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "oblanceolate" + "lbl" : "obsolete visual placing" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000152", + "id" : "http://purl.obolibrary.org/obo/PATO_0001591", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's sensitivity towards a fixed location or value where a change is observed; upper limit.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "threshold" + "lbl" : "curvature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001480", + "id" : "http://purl.obolibrary.org/obo/PATO_0000261", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's resembling a sponge in elasticity, absorbency, or porousness.", - "xrefs" : [ "Answers.com:Answers.com" ] + "val" : "A quality of a single physical entity which is held by a bearer when the latter exhibits a state of growth, differentiation, or development.", + "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "spongy" + "lbl" : "maturity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000151", + "id" : "http://purl.obolibrary.org/obo/PATO_0001596", "meta" : { + "definition" : { + "val" : "A depth quality which is relatively high.", + "xrefs" : [ "PATO:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "deep", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001472" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001666" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { + } ] + }, + "type" : "CLASS", + "lbl" : "increased depth" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000264", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative texture" + "lbl" : "obsolete absolute visual_ability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001481", + "id" : "http://purl.obolibrary.org/obo/PATO_0000263", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sloped" + "lbl" : "obsolete visual threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002333", + "id" : "http://purl.obolibrary.org/obo/PATO_0001597", "meta" : { "definition" : { - "val" : "A adhesivity which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An oriented quality inhering in a bearer by virtue of the bearer's being turned outward in placement.", + "xrefs" : [ "thefreedictionary:thefreedictionary" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T12:32:43Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002334" } ] }, "type" : "CLASS", - "lbl" : "increased adhesivity" + "lbl" : "everted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001486", + "id" : "http://purl.obolibrary.org/obo/PATO_0001594", "meta" : { "definition" : { - "val" : "An age quality that exists by virtue of the time (years and months) that the bearer has existed.", - "xrefs" : [ "WordNet:Wordnet" ] + "val" : "A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "chronological age" + "lbl" : "arched" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001002", + "id" : "http://purl.obolibrary.org/obo/PATO_0000266", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -43835,9 +44267,18 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete alternation value" + "lbl" : "obsolete absolute visual_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000154", + "id" : "http://purl.obolibrary.org/obo/go#goslim_plant", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Plant GO slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000265", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -43848,60 +44289,52 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete pain threshold" + "lbl" : "obsolete relative visual_ability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001487", + "id" : "http://purl.obolibrary.org/obo/PATO_0001595", "meta" : { "definition" : { - "val" : "A time quality inhering in a bearer by virtue of the bearer's growing old; aging.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimenision.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "senescent" + "lbl" : "depth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001003", + "id" : "http://purl.obolibrary.org/obo/PATO_0000279", "meta" : { + "definition" : { + "val" : "A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative alternation value" + "lbl" : "male fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002334", + "id" : "http://purl.obolibrary.org/obo/PATO_0000278", "meta" : { - "definition" : { - "val" : "A adhesivity which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] - }, "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T12:42:22Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002333" } ] }, "type" : "CLASS", - "lbl" : "decreased adhesivity" + "lbl" : "obsolete hybrid fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000153", + "id" : "http://purl.obolibrary.org/obo/PATO_0000271", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -43912,39 +44345,50 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute threshold" + "lbl" : "obsolete prepulse inhibition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000156", + "id" : "http://purl.obolibrary.org/obo/PATO_0000270", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete defecation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001484", + "id" : "http://purl.obolibrary.org/obo/PATO_0000273", "meta" : { "definition" : { - "val" : "A quality of a process which occurs near to or not long before the present.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A reproductive quality inhering in an organism or population by virtue of the bearer's potential reproductive capacity ad measured by the number of gametes.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Fecundity" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "recent" + "lbl" : "fecundity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001000", + "id" : "http://purl.obolibrary.org/obo/PATO_0000272", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative neurobehavioral function" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000275", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -43955,105 +44399,59 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative alternation" + "lbl" : "obsolete gestational period" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002331", + "id" : "http://purl.obolibrary.org/obo/PATO_0000274", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact.", + "val" : "A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "resinous", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T12:28:16Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002332" } ] }, "type" : "CLASS", - "lbl" : "adhesive" + "lbl" : "fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001485", + "id" : "http://purl.obolibrary.org/obo/PATO_0000277", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together.", + "val" : "A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "compressed", - "xrefs" : [ ] - }, { - "pred" : "hasBroadSynonym", - "val" : "compact", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "dense", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "squashed", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001840" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002452" } ] }, "type" : "CLASS", - "lbl" : "condensed" + "lbl" : "female fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002332", + "id" : "http://purl.obolibrary.org/obo/PATO_0000276", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact.", + "val" : "A reproductive quality inhering in the young of an animal by virtue of their number.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "non-resinous", + "val" : "litter size", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T12:28:57Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002331" } ] }, "type" : "CLASS", - "lbl" : "non-adhesive" + "lbl" : "brood size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000155", + "id" : "http://purl.obolibrary.org/obo/PATO_0000209", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -44064,163 +44462,150 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative threshold" + "lbl" : "obsolete digestive function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001001", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_131567", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "biota", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "hasRelatedSynonym", + "val" : "biota", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute alternation" + "lbl" : "cellular organisms" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045022", + "id" : "http://purl.obolibrary.org/obo/PATO_0001534", "meta" : { "definition" : { - "val" : "A fluid flow which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A color pattern inhering in a bearer by virtue of bearer's having 3 or more hues or degrees of saturations.", + "xrefs" : [ "merriam-webster.:merriam-webster." ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal fluid flow" + "lbl" : "motley" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045023", + "id" : "http://purl.obolibrary.org/obo/PATO_0000202", "meta" : { - "definition" : { - "val" : "A fluorescence which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "normal fluorescence" + "lbl" : "obsolete long term memory" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045024", + "id" : "http://purl.obolibrary.org/obo/PATO_0001535", "meta" : { "definition" : { - "val" : "A force which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A color pattern inhering in a bearer by virtue of bearer's being marked with small spots, patches, or specks of hue or degree of saturation differing from that of the background.", + "xrefs" : [ "merriam-webster.:merriam-webster." ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "speckled", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "normal force" + "lbl" : "dappled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045025", + "id" : "http://purl.obolibrary.org/obo/PATO_0000201", "meta" : { - "definition" : { - "val" : "A fragility which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "normal fragility" + "lbl" : "obsolete memory" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045020", + "id" : "http://purl.obolibrary.org/obo/PATO_0000204", "meta" : { - "definition" : { - "val" : "A fertility which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal fertility" + "lbl" : "obsolete absolute locomotor_activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045021", + "id" : "http://purl.obolibrary.org/obo/PATO_0001532", "meta" : { "definition" : { - "val" : "A flexibility which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A color pattern inhering in a bearer by virtue of the bearer's having one hue.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "homogeneously colored", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "evenly colored", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "homogenously pigmented", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "uniformly colored", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "normal flexibility" + "lbl" : "mono-colored" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001419", + "id" : "http://purl.obolibrary.org/obo/PATO_0001533", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge.", + "val" : "A color pattern inhering in a bearer by virtue of bearer's having two or more hues or degrees of saturation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "variegated", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sharp" + "lbl" : "multi-colored" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000565", + "id" : "http://purl.obolibrary.org/obo/PATO_0000203", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -44231,124 +44616,78 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete volume value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001413", - "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the rate of the bearer's angular movement about an axis; the angle rotated in a given time.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Angular_velocity" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "angular velocity" + "lbl" : "obsolete short term memory" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001897", + "id" : "http://purl.obolibrary.org/obo/PATO_0001538", "meta" : { "definition" : { - "val" : "A structure quality inhering in a bearer by virtue of the bearer's having a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A solubility quality inhering in a substance by virtue of the bearer's inability of a substance to dissolve in a liquid.", + "xrefs" : [ "edp:edp" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "insoluble", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "See GO term: GO:0031974 membrane-enclosed lumen [DEF:\"The enclosed volume within a sealed membrane or between two sealed membranes\"]." + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001537" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001896" } ] }, "type" : "CLASS", - "lbl" : "lumenized" + "lbl" : "insoluble in" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001414", + "id" : "http://purl.obolibrary.org/obo/PATO_0000206", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a catalyst by virtue of the amount of the catalyst's action.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "catalytic activity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000564", - "meta" : { - "basicPropertyValues" : [ { + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete thickness value" + "lbl" : "obsolete enzyme function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001898", + "id" : "http://purl.obolibrary.org/obo/PATO_0000205", "meta" : { - "definition" : { - "val" : "A circumference which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001899" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased circumference" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001895", - "meta" : { - "definition" : { - "val" : "A biological sex quality inhering in an individual or a population that undergo sexual reproduction.", - "xrefs" : [ "wikipedia:wikipedia" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "mating type" + "lbl" : "obsolete relative locomotor_activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001411", + "id" : "http://purl.obolibrary.org/obo/PATO_0001539", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's having distinct structure.", + "val" : "A compositional quality inhering in an bearer by virtue of the bearer's quantities or relative ratios of amylose of the inhering entity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "amylose compositionality", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001412" } ] }, "type" : "CLASS", - "lbl" : "structured" + "lbl" : "amylose composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000567", + "id" : "http://purl.obolibrary.org/obo/PATO_0000208", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -44359,213 +44698,193 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute height value" + "lbl" : "obsolete defensive function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001896", + "id" : "http://purl.obolibrary.org/obo/PATO_0001536", "meta" : { "definition" : { - "val" : "A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A molecular quality that inheres in a molecular entity by virtue of the bearer's disposition to dissolve in a liquid.", + "xrefs" : [ "edp:edp" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001897" } ] }, "type" : "CLASS", - "lbl" : "unlumenized" + "lbl" : "solubility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000566", + "id" : "http://purl.obolibrary.org/obo/PATO_0001537", "meta" : { + "definition" : { + "val" : "A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid.", + "xrefs" : [ "edp:edp" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : ":breadth", + "pred" : "hasExactSynonym", + "val" : "soluble", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001538" } ] }, "type" : "CLASS", - "lbl" : "obsolete width value" + "lbl" : "soluble in" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001412", + "id" : "http://purl.obolibrary.org/obo/PATO_0000207", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001411" } ] }, "type" : "CLASS", - "lbl" : "unstructured" + "lbl" : "obsolete circulatory function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000569", + "id" : "http://purl.obolibrary.org/obo/PATO_0001530", "meta" : { "definition" : { - "val" : "A height which is relatively low.", + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's behavior.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "short", + "pred" : "hasExactSynonym", + "val" : "behavioral quality of occurrent", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000570" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased height" + "lbl" : "behavioral quality of a process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001417", + "id" : "http://purl.obolibrary.org/obo/PATO_0001531", "meta" : { "definition" : { - "val" : "A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times.", - "xrefs" : [ "PATOC:melissa" ] + "val" : "A cellular quality that exists by virtue of the disposition of the cell to adhere to other cells and molecules, through the emergent action of the molecular parts of the cell surface.", + "xrefs" : [ "PATOC:cjm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - 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"subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "stiff", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "stiffness", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001544" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "lethargic" + "lbl" : "inflexible" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001899", + "id" : "http://purl.obolibrary.org/obo/PATO_0000213", "meta" : { - "definition" : { - "val" : "A circumference which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - 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"definition" : { - "val" : "A duration which has regular start and/or end times.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001417" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "regular duration" + "lbl" : "obsolete neural function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001890", + "id" : "http://purl.obolibrary.org/obo/PATO_0001546", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being divided into three branches.", - "xrefs" : [ "InfoVisual:InfoVisual" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity characterized by particles arranged such that their shape and volume are relatively stable.", + "xrefs" : [ "Chemistry:http://chemistry.about.com/od/chemistryglossary/a/soliddefinition.htm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "trifurcate", + "val" : "solidity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -44574,146 +44893,136 @@ } ] }, "type" : "CLASS", - "lbl" : "tripartite" + "lbl" : "quality of a solid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001893", + "id" : "http://purl.obolibrary.org/obo/PATO_0001543", "meta" : { "definition" : { - "val" : "An odor quality of having increased odor.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking.", + "xrefs" : [ "merriam-webster:merriam-webster" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001892" } ] }, "type" : "CLASS", - "lbl" : "increased odor" + "lbl" : "flexibility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000561", + "id" : "http://purl.obolibrary.org/obo/PATO_0000215", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete length value" + "lbl" : "obsolete respiratory function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000560", + "id" : "http://purl.obolibrary.org/obo/PATO_0001544", "meta" : { + "definition" : { + "val" : "A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking.", + "xrefs" : [ "merriam-webster:merriam-webster" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "bendy", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001545" } ] }, "type" : "CLASS", - "lbl" : "obsolete height value" + "lbl" : "flexible" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001410", + "id" : "http://purl.obolibrary.org/obo/PATO_0000214", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel.", - "xrefs" : [ "Biology-online:Biology-online" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "striated" + "lbl" : "obsolete reproductive function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001894", + "id" : "http://purl.obolibrary.org/obo/PATO_0000217", "meta" : { - "definition" : { - "val" : "An organismal quality inhering in a bearer by virtue of the bearer's physical expression of sexual characteristics.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "phenotypic sex" + "lbl" : "obsolete immune function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001891", + "id" : "http://purl.obolibrary.org/obo/PATO_0001549", "meta" : { "definition" : { - "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; egg-shaped.", - "xrefs" : [ "PATOC:mc" ] + "val" : "A sensitivity toward an external stimulus which is higher than normal/average.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "eccentric", - "xrefs" : [ ] - }, { "pred" : "hasExactSynonym", - "val" : "ovoid", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "oval", + "val" : "high sensitivity toward", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "egg-shaped", + "val" : "increased sensitivity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001550" } ] }, "type" : "CLASS", - "lbl" : "ovate" + "lbl" : "increased sensitivity toward" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000563", + "id" : "http://purl.obolibrary.org/obo/PATO_0000216", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative size value" + "lbl" : "obsolete heart rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001892", + "id" : "http://purl.obolibrary.org/obo/RO_0002481", "meta" : { - "definition" : { - "val" : "An odor quality of having decreased odor.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001893" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "decreased odor" + "type" : "PROPERTY", + "lbl" : "is kinase activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000562", + "id" : "http://purl.obolibrary.org/obo/PATO_0000219", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -44724,150 +45033,120 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete mass value" + "lbl" : "obsolete healing" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045008", + "id" : "http://purl.obolibrary.org/obo/PATO_0001547", "meta" : { "definition" : { - "val" : "A cellular motility which is normal or average.", - "xrefs" : [ ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape.", + "xrefs" : [ "Chemistry:http://chemistry.about.com/od/chemistryglossary/a/gasdefinition.htm", "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "gaseous", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "normal cellular motility" + "lbl" : "quality of a gas" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045009", + "id" : "http://purl.obolibrary.org/obo/PATO_0001548", "meta" : { "definition" : { - "val" : "A coiling which is normal or average.", - "xrefs" : [ ] + "val" : "A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape.", + "xrefs" : [ "url:http://www.chemistry-dictionary.com/definition/liquid.php" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "liquidity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal coiling" + "lbl" : "quality of a liquid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045004", + "id" : "http://purl.obolibrary.org/obo/PATO_0000218", "meta" : { - "definition" : { - "val" : "An affinity which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "normal affinity" + "lbl" : "obsolete repair function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045005", + "id" : "http://purl.obolibrary.org/obo/PATO_0001541", "meta" : { "definition" : { - "val" : "An age which is relatively normal or average.", - "xrefs" : [ ] + "val" : "An amylose composition quality inhering in an bearer by virtue of the bearer's having high amount of amylose content.", + "xrefs" : [ "TO:TO" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal age" + "lbl" : "non-glutinous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045006", + "id" : "http://purl.obolibrary.org/obo/PATO_0001542", "meta" : { "definition" : { - "val" : "An avidity which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A phase which starts later than natural start point.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal avidity" + "lbl" : "delayed phase" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045007", + "id" : "http://purl.obolibrary.org/obo/RO_0002479", "meta" : { "definition" : { - "val" : "A behavioural quality of a process inhering in a bearer by virtue of the bearer's exhibiting normal or average activity.", + "val" : "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "normal behavioural activity" + "type" : "PROPERTY", + "lbl" : "has part that occurs in" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001424", + "id" : "http://purl.obolibrary.org/obo/PATO_0000211", "meta" : { - "definition" : { - "val" : "A color hue with very low wavelength of that portion of the visible spectrum lying between reddish blue or bluish purple, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 380 nanometers.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Violet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "violet" + "lbl" : "obsolete muscle function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000576", + "id" : "http://purl.obolibrary.org/obo/PATO_0000210", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -44878,13 +45157,13 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative mass value" + "lbl" : "obsolete excretory function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001425", + "id" : "http://purl.obolibrary.org/obo/PATO_0001540", "meta" : { "definition" : { - "val" : "A color hue consisting of red hue and yellow hue and high brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An amylose composition quality inhering in an bearer by virtue of the bearer's having negligible or no amylose content.", + "xrefs" : [ "TO:TO" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -44893,67 +45172,93 @@ } ] }, "type" : "CLASS", - "lbl" : "rosy" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000575", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete absolute mass value" + "lbl" : "glutinous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001422", + "id" : "http://purl.obolibrary.org/obo/pato#directly_associated_with", "meta" : { "definition" : { - "val" : "A viability quality inhering in a bearer by virtue of the cessation of the bearer's life.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear.", + "xrefs" : [ "PATOC:cjm", "Wikipedia:Association_(statistics)" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Example: 'Lewy bodies increased number related to dystrophic neurite increased number' (from annotation of PMID:8740227 in http://ccdb.ucsd.edu/1.0/NDPO.owl#ndpo_404). Here the increase in the number of lewy bodies is directly_associated_with the increase in the number of dystrophic neurites.\nAssociation is weaker than correlation or proportionality. These relations may be later added to PATO." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-08-26T02:50:08Z" } ] }, - "type" : "CLASS", - "lbl" : "dead" + "type" : "PROPERTY", + "lbl" : "directly_associated_with" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000578", + "id" : "http://purl.obolibrary.org/obo/PATO_0001556", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001563" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "val" : "http://purl.obolibrary.org/obo/PATO_0001624" } ] }, "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001423", + "id" : "http://purl.obolibrary.org/obo/RO_0002473", "meta" : { "definition" : { - "val" : "A reflectivity quality inhering in the bearer by virtue of the bearer's ability to refract light.", - "xrefs" : [ "biology-online:biology-online" ] + "val" : "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "xrefs" : [ { + "val" : "RO:0002473" + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "composed_primarily_of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "composed primarily of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000224", + "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "refractile" + "lbl" : "obsolete motor function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000577", + "id" : "http://purl.obolibrary.org/obo/PATO_0000223", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -44964,197 +45269,225 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete weight value" + "lbl" : "obsolete muscle strength" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001428", + "id" : "http://purl.obolibrary.org/obo/PATO_0001557", "meta" : { - "definition" : { - "val" : "A concentration quality inhering in a medium by virtue of the bearer's tendency to hydronate a specific reference base.", - "xrefs" : [ "chemicool:chemicool" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0002000" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "medium acidity" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001429", + "id" : "http://purl.obolibrary.org/obo/pato#abnormal_slim", "meta" : { - "definition" : { - "val" : "An medium acidity quality inhering in a solution by virtue of the bearer's a high concentration of H+ ions.", - "xrefs" : [ "chemicool:chemicool" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Abnormal/normal slim" } ] }, - "type" : "CLASS", - "lbl" : "acidic" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000579", + "id" : "http://purl.obolibrary.org/obo/PATO_0000226", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001562" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete tactile response" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001426", + "id" : "http://purl.obolibrary.org/obo/PATO_0001554", "meta" : { "definition" : { - "val" : "A color consisting of purple and brown hue.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Maroon" ] + "val" : "A sensitivity of a process to oxygen which is lower than normal or average.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low sensitivity of occurrent to oxygen", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001553" } ] }, "type" : "CLASS", - "lbl" : "maroon" + "lbl" : "decreased sensitivity of a process to oxygen" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001427", + "id" : "http://purl.obolibrary.org/obo/PATO_0000225", "meta" : { - "definition" : { - "val" : "A concentration quality inhering in compound by virtue of the bearer's tendency to act as a hydron donor.", - "xrefs" : [ "chemicool:chemicool" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "compound acidity" + "lbl" : "obsolete sensory function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000570", + "id" : "http://purl.obolibrary.org/obo/PATO_0001555", "meta" : { "definition" : { - "val" : "A height which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "xrefs" : [ { + "val" : "OBO_REL:has_part" + } ], "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "mereological quality", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "number of", + "xrefs" : [ ] + }, { "pred" : "hasRelatedSynonym", - "val" : "tall", + "val" : "cardinality", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "number", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "has or lacks parts of type", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "extra or missing physical or functional parts", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000569" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased height" + "lbl" : "has number of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000572", + "id" : "http://purl.obolibrary.org/obo/PATO_0000228", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative length value" + "lbl" : "obsolete auditory" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002598", + "id" : "http://purl.obolibrary.org/obo/PATO_0000227", "meta" : { - "definition" : { - "val" : "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "renin -> arteriolar smooth muscle contraction" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "capable of positively regulating" + "type" : "CLASS", + "lbl" : "obsolete motor performance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001420", + "id" : "http://purl.obolibrary.org/obo/PATO_0001558", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to rise or float in a fluid medium such as water or air.", + "val" : "A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "buoyancy" + "lbl" : "lacking processual parts" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000571", + "id" : "http://purl.obolibrary.org/obo/PATO_0001559", "meta" : { + "definition" : { + "val" : "A functionality quality which is held by the bearer when the latter is able to perform additional or different function(s).", + "xrefs" : [ "PATO:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "having supernumerary functions", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { + } ] + }, + "type" : "CLASS", + "lbl" : "having extra function" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000229", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute length value" + "lbl" : "obsolete olfactory" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001421", + "id" : "http://purl.obolibrary.org/obo/PATO_0000220", "meta" : { - "definition" : { - "val" : "A viability quality inhering in a bearer by virtue of the bearer's condition before death.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "alive" + "lbl" : "obsolete regeneration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000574", + "id" : "http://purl.obolibrary.org/obo/PATO_0001552", "meta" : { "definition" : { - "val" : "A length quality which is relatively small.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A sensitivity of a process which is lower than normal or average.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "stubby", - "xrefs" : [ ] - }, { "pred" : "hasExactSynonym", - "val" : "short", + "val" : "decreased sensitivity of occurrent", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "shortened", + "pred" : "hasExactSynonym", + "val" : "low sensitivity of occurrent", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -45162,32 +45495,22 @@ "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000573" + "val" : "http://purl.obolibrary.org/obo/PATO_0001551" } ] }, "type" : "CLASS", - "lbl" : "decreased length" - }, { - "id" : "http://purl.obolibrary.org/obo/pato#is_magnitude_of", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "pato.ontology" - } ] - }, - "type" : "PROPERTY", - "lbl" : "is_magnitude_of" + "lbl" : "decreased sensitivity of a process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000573", + "id" : "http://purl.obolibrary.org/obo/PATO_0001553", "meta" : { "definition" : { - "val" : "A length quality which is relatively large.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A sensitivity of occurrent to oxygen which is higher than normal or average.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "long", + "val" : "high sensitivity of occurrent to oxygen", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -45195,305 +45518,224 @@ "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000574" + "val" : "http://purl.obolibrary.org/obo/PATO_0001554" } ] }, "type" : "CLASS", - "lbl" : "increased length" + "lbl" : "increased sensitivity of a process to oxygen" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0009987", + "id" : "http://purl.obolibrary.org/obo/PATO_0001550", "meta" : { "definition" : { - "val" : "Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.", - "xrefs" : [ "GOC:go_curators", "GOC:isa_complete" ] + "val" : "A sensitivity toward an external stimulus which is lower than normal/average.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "cellular physiological process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "cell growth and/or maintenance", + "val" : "low sensitivity toward", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "cell physiology", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "single-organism cellular process", + "val" : "decreased sensitivity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0044763" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0050875" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "janelomax" + "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0008151" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-11T16:56:55Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001549" } ] }, "type" : "CLASS", - "lbl" : "cellular process" + "lbl" : "decreased sensitivity toward" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045000", + "id" : "http://purl.obolibrary.org/obo/PATO_0000222", "meta" : { - "definition" : { - "val" : "A rate which is relatively normal.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal rate" + "lbl" : "obsolete muscle elevation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045001", + "id" : "http://purl.obolibrary.org/obo/PATO_0000221", "meta" : { - "definition" : { - "val" : "A quality of an object that has a value that is normal or average.", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-21T14:11:01Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "normal object quality" + "lbl" : "obsolete urination" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045002", + "id" : "http://purl.obolibrary.org/obo/PATO_0001551", "meta" : { "definition" : { - "val" : "An acidity which is relatively normal.", - "xrefs" : [ ] + "val" : "A sensitivity of a process which is higher than normal or average.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high sensitivity of occurrent", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "increased sensitivity of occurrent", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001552" } ] }, "type" : "CLASS", - "lbl" : "normal acidity" + "lbl" : "increased sensitivity of a process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045003", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_314295", "meta" : { - "definition" : { - "val" : "A adhesivity which is relatively normal or average.", + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "ape", "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "hasExactSynonym", + "val" : "apes", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "normal adhesivity" + "lbl" : "Hominoidea" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000587", + "id" : "http://purl.obolibrary.org/obo/GO_0005488", "meta" : { "definition" : { - "val" : "A size quality which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.", + "xrefs" : [ "GOC:ceb", "GOC:mah", "ISBN:0198506732" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], + "xrefs" : [ { + "val" : "Wikipedia:Binding_(molecular)" + } ], "synonyms" : [ { "pred" : "hasNarrowSynonym", - "val" : "underdeveloped", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "tiny", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "small", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "reduced", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "hypoplasia", + "val" : "ligand", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children." }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000586" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" } ] }, "type" : "CLASS", - "lbl" : "decreased size" + "lbl" : "binding" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001435", + "id" : "http://purl.obolibrary.org/obo/PATO_0001567", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001566" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "attachment quality" + "lbl" : "undistributed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000103", + "id" : "http://purl.obolibrary.org/obo/PATO_0000235", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete micronutrient sensitivity" + "lbl" : "obsolete odor_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002595", + "id" : "http://purl.obolibrary.org/obo/PATO_0001568", "meta" : { - "definition" : { - "val" : "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001624" } ] }, - "type" : "PROPERTY", - "lbl" : "causal relation between material entity and a process" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001436", + "id" : "http://purl.obolibrary.org/obo/PATO_0000234", "meta" : { - "definition" : { - "val" : "An attachment quality inhering in a flower by virtue of the bearer's lacking a stalk, as in flowers or leaves that grow directly from the stem.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sessility_(botany)" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sessile (sensu botany)" + "lbl" : "obsolete visual" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000586", + "id" : "http://purl.obolibrary.org/obo/RO_0002464", "meta" : { - "definition" : { - "val" : "A size quality which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "great", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "enlarged", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "expanded", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "large", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "big", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001202" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000587" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, - "type" : "CLASS", - "lbl" : "increased size" + "type" : "PROPERTY", + "lbl" : "helper property (not for use in curation)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000102", + "id" : "http://purl.obolibrary.org/obo/PATO_0001565", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete macronutrient sensitivity" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002596", - "meta" : { - "definition" : { - "val" : "Holds between c and p if and only if c is capable of some activity a, and a regulates p.", - "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "pyrethroid -> growth" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "PROPERTY", - "lbl" : "capable of regulating" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000589", + "id" : "http://purl.obolibrary.org/obo/PATO_0000237", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -45504,81 +45746,65 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute thickness value" + "lbl" : "obsolete absolute odor_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001433", + "id" : "http://purl.obolibrary.org/obo/PATO_0001566", "meta" : { "definition" : { - "val" : "A quality of a single process which describes the growth of an organism, structure, or group of organisms.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "growth timing quality", + "pred" : "hasExactSynonym", + "val" : "diffuse", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "growth quality of a process", + "pred" : "hasExactSynonym", + "val" : "scattered", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001489" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "growth quality of occurrent" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000105", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001513" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001567" } ] }, "type" : "CLASS", - "lbl" : "obsolete p h sensitivity" + "lbl" : "distributed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001434", + "id" : "http://purl.obolibrary.org/obo/PATO_0000236", "meta" : { - "definition" : { - "val" : "An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring.", - "xrefs" : [ "WordNet:WordNet" ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "reproductive quality" + "lbl" : "obsolete odor type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000588", + "id" : "http://purl.obolibrary.org/obo/PATO_0000239", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being a remnant structure from earlier development or evolution.", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "May be part of an animal (such as an organ or bone) that is no longer used by the species and has therefore become smaller or less developed." + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "vestigial" + "lbl" : "obsolete blinking reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000104", + "id" : "http://purl.obolibrary.org/obo/PATO_0000238", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -45589,90 +45815,80 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete osmotic response sensitivity" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002597", - "meta" : { - "definition" : { - "val" : "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.", - "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - } ] - }, - "type" : "PROPERTY", - "lbl" : "capable of negatively regulating" + "lbl" : "obsolete relative odor_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000107", + "id" : "http://purl.obolibrary.org/obo/PATO_0001569", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0002001" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "obsolete alkali sensitivity" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001439", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_314293", "meta" : { - "definition" : { - "val" : "A contractile quality inhering in a bearer by virtue of the bearer's elastic tension that facilitate response to stimuli.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "tone", + "pred" : "hasRelatedSynonym", + "val" : "Anthropoidea", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "TODO: we need a clearer differentium between this and contractility - or merge?" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001498" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "tonicity" + "lbl" : "Simiiformes" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000106", + "id" : "http://purl.obolibrary.org/obo/PATO_0001560", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0002002" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "obsolete acid sensitivity" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001437", + "id" : "http://purl.obolibrary.org/obo/PATO_0001563", "meta" : { "definition" : { - "val" : "A attachment quality inhering in a bearer by virtue of the bearer's inability to move about.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sessile_(zoology)" ] + "val" : "A mass which is higher than normal or average.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high mass", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "large mass", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001562" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000578" } ] }, "type" : "CLASS", - "lbl" : "sessile (sensu zoology)" + "lbl" : "increased mass" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000109", + "id" : "http://purl.obolibrary.org/obo/PATO_0000231", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -45683,24 +45899,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete water sensitivity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001438", - "meta" : { - "definition" : { - "val" : "A attachment quality inhering in a bearer by virtue of the bearer's having or being supported by a pedicel or pedicle.", - "xrefs" : [ "MedTerms:MedTerms" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "pedicellate" + "lbl" : "obsolete reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000108", + "id" : "http://purl.obolibrary.org/obo/PATO_0000230", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -45711,22 +45912,24 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete salt sensitivity" + "lbl" : "obsolete proprioreception" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000581", + "id" : "http://purl.obolibrary.org/obo/PATO_0001564", "meta" : { + "definition" : { + "val" : "A quality of a process inhering in a bearer by virtue of the bearer's processual parts.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative weight value" + "lbl" : "extra or missing processual parts" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000580", + "id" : "http://purl.obolibrary.org/obo/PATO_0000233", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -45737,1029 +45940,1073 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute weight value" + "lbl" : "obsolete touch" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001431", + "id" : "http://purl.obolibrary.org/obo/pato#is_measurement_of", "meta" : { - "definition" : { - "val" : "An emergent molecular quality that arises by virtue of the bearer's disposition to exhibit molecular attraction to another entity in contact.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "adhesiveness", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "stickiness", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "The definition is general enough to cover adhesion arising from different kinds of chemical bonding/forces, although for PATO this term will most commonly used for cellular adhesion. See also GO:0031589 \"cell-substrate adhesion\"." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "pato.ontology" } ] }, - "type" : "CLASS", - "lbl" : "adhesivity" + "type" : "PROPERTY", + "lbl" : "is_measurement_of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000583", + "id" : "http://purl.obolibrary.org/obo/PATO_0001561", "meta" : { "definition" : { - "val" : "A weight which is relatively low.", + "val" : "A quality of a process inhering in a bearer by virtue of the bearer's having additional processual parts.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low weight", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "light weight", + "val" : "having supernumerary processual parts", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000582" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased weight" + "lbl" : "having extra processual parts" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000582", + "id" : "http://purl.obolibrary.org/obo/PATO_0001562", "meta" : { "definition" : { - "val" : "A weight which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A mass which is lower than normal or average.", + "xrefs" : [ "PATO:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high weight", + "val" : "low mass", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "heavy", + "val" : "small mass", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000579" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000583" + "val" : "http://purl.obolibrary.org/obo/PATO_0001563" } ] }, "type" : "CLASS", - "lbl" : "increased weight" + "lbl" : "decreased mass" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001432", + "id" : "http://purl.obolibrary.org/obo/PATO_0000232", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's decomposition into component parts.", - "xrefs" : [ "Medical-dictionary:Medical-dictionary" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decayed" + "lbl" : "obsolete taste" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000585", + "id" : "http://purl.obolibrary.org/obo/CARO_0001010", "meta" : { "definition" : { - "val" : "A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ).", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "shrunken", + "val" : "Material anatomical entity that is a member of an individual species or is a viral or viroid particle.", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000412" + "pred" : "http://purl.obolibrary.org/obo/IAO_creation_date", + "val" : "9/18/11" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000584" + "pred" : "http://purl.obolibrary.org/obo/IAO_created_by", + "val" : "Melissa Haendel" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "organism or virus" } ] }, "type" : "CLASS", - "lbl" : "hypotrophic" + "lbl" : "organism or virus or viroid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000101", + "id" : "http://purl.obolibrary.org/obo/RO_0002450", "meta" : { + "definition" : { + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly increases activity of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "activates" } ] }, - "type" : "CLASS", - "lbl" : "obsolete soil nutrient sensitivity" + "type" : "PROPERTY", + "lbl" : "activity directly positively regulates activity of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000584", + "id" : "http://purl.obolibrary.org/obo/RO_0002448", "meta" : { "definition" : { - "val" : "An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ).", - "xrefs" : [ "PATOC:MAH" ] + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "hypertrophy", + "pred" : "hasExactSynonym", + "val" : "molecularly controls", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000585" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "hypertrophic" + "type" : "PROPERTY", + "lbl" : "activity directly regulates activity of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000100", + "id" : "http://purl.obolibrary.org/obo/RO_0002449", "meta" : { + "definition" : { + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly decreases activity of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "inhibits" } ] }, - "type" : "CLASS", - "lbl" : "obsolete soil composition sensitivity" + "type" : "PROPERTY", + "lbl" : "molecularly decreases activity of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001430", + "id" : "http://purl.obolibrary.org/obo/RO_0002447", "meta" : { - "definition" : { - "val" : "An medium acidity quality inhering in a solution by virtue of the bearer's a low concentration of H+ ions.", - "xrefs" : [ "chemicool:chemicool" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Axiomatization to GO to be added later" } ] }, - "type" : "CLASS", - "lbl" : "alkaline" + "type" : "PROPERTY", + "lbl" : "phosphorylates" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0030545", + "id" : "http://purl.obolibrary.org/obo/IAO_0000116", "meta" : { "definition" : { - "val" : "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed.", - "xrefs" : [ "GOC:ceb" ] + "val" : "An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.", + "xrefs" : [ ] }, "xrefs" : [ { - "val" : "MIPS_funcat:18.02.07" + "val" : "IAO:0000116" } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "editor_note" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "editor note" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "molecular_function" + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "receptor regulator activity" + "type" : "PROPERTY", + "lbl" : "editor note" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0030546", + "id" : "http://purl.obolibrary.org/obo/IAO_0000117", "meta" : { "definition" : { - "val" : "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased.", - "xrefs" : [ "GOC:ceb" ] - }, - "synonyms" : [ { - "pred" : "hasBroadSynonym", - "val" : "receptor activator activity", + "val" : "Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "molecular_function" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "term editor" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" } ] }, - "type" : "CLASS", - "lbl" : "signaling receptor activator activity" + "type" : "PROPERTY", + "lbl" : "term editor" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000114", + "id" : "http://purl.obolibrary.org/obo/IAO_0000114", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Melanie Courtot" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Bill Bug" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has curation status" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "OBI_0000281" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" } ] }, - "type" : "CLASS", - "lbl" : "obsolete temperature sensitivity" + "type" : "PROPERTY", + "lbl" : "has curation status" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001446", + "id" : "http://purl.obolibrary.org/obo/IAO_0000115", "meta" : { "definition" : { - "val" : "A wholeness quality inhering in a bearer by virtue of the bearer's including all its components.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "definition" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "2012-04-05: \nBarry Smith\n\nThe official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.\n\nCan you fix to something like:\n\nA statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.\n\nAlan Ruttenberg\n\nYour proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. \n\nOn the specifics of the proposed definition:\n\nWe don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. \n\nPersonally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. \n\nWe also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. " + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" } ] }, - "type" : "CLASS", - "lbl" : "whole" + "type" : "PROPERTY", + "lbl" : "definition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000598", + "id" : "http://purl.obolibrary.org/obo/IAO_0000112", "meta" : { + "definition" : { + "val" : "A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "IAO:0000112" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "example_of_usage" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "example" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative width value" + "type" : "PROPERTY", + "lbl" : "example of usage" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001447", + "id" : "http://purl.obolibrary.org/obo/IAO_0000111", "meta" : { "definition" : { - "val" : "A composition quality inhering in an bearer by virtue of the bearer's being encrusted or impregnated with calcium carbonate (CHEBI:3311).", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "calcification", + "val" : "The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)", "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "calcareous", - "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "editor preferred term" } ] }, - "type" : "CLASS", - "lbl" : "calcified" + "type" : "PROPERTY", + "lbl" : "editor preferred term" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000113", + "id" : "http://purl.obolibrary.org/obo/PATO_0001509", "meta" : { + "definition" : { + "val" : "A quality of a single physical entity that arises by virtue of whether the bearer exhibits the ability to perform a regular function(s).", + "xrefs" : [ "PATOC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete radiation sensitivity" + "lbl" : "functionality" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002584", + "id" : "http://purl.obolibrary.org/obo/PATO_0001507", "meta" : { "definition" : { - "val" : "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p", - "xrefs" : [ ] + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's being interrupted of its normal course.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "has part structure that is capable of" + "type" : "CLASS", + "lbl" : "disrupted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000597", + "id" : "http://purl.obolibrary.org/obo/PATO_0001508", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000297" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute width value" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001444", + "id" : "http://purl.obolibrary.org/obo/IAO_0000118", "meta" : { "definition" : { - "val" : "A broken quality inhering in a bearer by virtue of the bearer's being broken open.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "hemorrhaged", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "ruptured", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "cracked", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "fractured", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "burst", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "fragmented", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "torn", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "split", + "val" : "An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001820" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "alternative term" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001443" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" } ] }, - "type" : "CLASS", - "lbl" : "broken" + "type" : "PROPERTY", + "lbl" : "alternative term" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000116", + "id" : "http://purl.obolibrary.org/obo/IAO_0000119", "meta" : { + "definition" : { + "val" : "formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "definition source" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative temperature sensitivity" + "type" : "PROPERTY", + "lbl" : "definition source" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000599", + "id" : "http://purl.obolibrary.org/obo/PATO_0001501", "meta" : { "definition" : { - "val" : "A width which is relatively small.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development.", + "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "narrow", + "val" : "underdeveloped", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000600" + "val" : "http://purl.obolibrary.org/obo/PATO_0001701" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased width" + "lbl" : "immature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001445", + "id" : "http://purl.obolibrary.org/obo/PATO_0001502", "meta" : { "definition" : { - "val" : "A wholeness quality inhering in a bearer by virtue of the bearer's being taken apart into its constituent parts.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A monadic quality of continuant inhering in a bearer by virtue of the bearer's being intricate and compounded.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "disassembled" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000115", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: obsolete this." } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute temperature sensitivity" + "lbl" : "complexity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000118", + "id" : "http://purl.obolibrary.org/obo/PATO_0001500", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being gradually narrower or thinner toward one end.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "taper", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute size" + "lbl" : "tapered" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000117", + "id" : "http://purl.obolibrary.org/obo/PATO_0001505", "meta" : { "definition" : { - "val" : "A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.", + "val" : "A structural quality inhering in a bearer by virtue of the bearer's not being in contact with another entity, or of no longer being connected or joined with another entity.", "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "discontiguous", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "divided_from", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "splitted from", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "size" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002581", - "meta" : { - "definition" : { - "val" : "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. 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A corollary of this is that P SubPropertyOf R.", + "val" : "Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.", "xrefs" : [ ] } }, - "type" : "PROPERTY", - "lbl" : "is a defining property chain axiom where second argument is reflexive" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000590", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete relative thickness value" + "type" : "INDIVIDUAL", + "lbl" : "metadata complete" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000592", + "id" : "http://purl.obolibrary.org/obo/RO_0002434", "meta" : { "definition" : { - "val" : "A thickness which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A relationship that holds between two entities in which the processes executed by the two entities are causally connected.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "thin", - "xrefs" : [ ] - }, { "pred" : "hasExactSynonym", - "val" : "low thickness", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "slender", + "val" : "in pairwise interaction with", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000591" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0914" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Considering relabeling as 'pairwise interacts with'" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." + }, { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." } ] }, - "type" : "CLASS", - "lbl" : "decreased thickness" + "type" : "PROPERTY", + "lbl" : "interacts with" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000591", + "id" : "http://purl.obolibrary.org/obo/RO_0002436", "meta" : { "definition" : { - "val" : "A thickness which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "thick", + "val" : "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.", "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "molecularly binds with" }, { - "pred" : "hasExactSynonym", - "val" : "stout", - "xrefs" : [ ] + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0915" }, { - "pred" : "hasExactSynonym", - "val" : "high thickness", - "xrefs" : [ ] + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "binds" }, { - "pred" : "hasExactSynonym", - "val" : "thickened", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/ECO_0000353" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000592" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "increased thickness" + "type" : "PROPERTY", + "lbl" : "molecularly interacts with" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000594", + "id" : "http://purl.obolibrary.org/obo/IAO_0000125", "meta" : { + "definition" : { + "val" : "All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative volume value" + "type" : "INDIVIDUAL", + "lbl" : "pending final vetting" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001442", + "id" : "http://purl.obolibrary.org/obo/IAO_0000123", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of whether the bearer includes all its components.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "metadata incomplete" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000124", + "meta" : { + "definition" : { + "val" : "Nothing done yet beyond assigning a unique class ID and proposing a preferred term.", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "uncurated" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000121", + "meta" : { + "definition" : { + "val" : "term created to ease viewing/sort terms for development purpose, and will not be included in a release", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "organizational term" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000122", + "meta" : { + "definition" : { + "val" : "Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking \"ready_for_release\" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed \"ready_for_release\" will also derived from a chain of ancestor classes that are also \"ready_for_release.\"", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, - "type" : "CLASS", - "lbl" : "wholeness" + "type" : "INDIVIDUAL", + "lbl" : "ready for release" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000110", + "id" : "http://purl.obolibrary.org/obo/PATO_0001518", "meta" : { + "definition" : { + "val" : "An optical quality inhering in a bearer by virtue of the bearer's lacking focus.", + "xrefs" : [ "PATOC:NC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete drought sensitivity" + "lbl" : "blurry" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000593", + "id" : "http://purl.obolibrary.org/obo/PATO_0001519", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of vibration, as perceived by the sense of hearing.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sound_quality" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute volume value" + "lbl" : "sound quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001443", + "id" : "http://purl.obolibrary.org/obo/uberon/core#upper_level", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001444" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "abstract upper-level terms not directly useful for analysis" } ] }, - "type" : "CLASS" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000596", + "id" : "http://purl.obolibrary.org/obo/PATO_0001512", "meta" : { "definition" : { - "val" : "A volume which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A pattern inhering in a surface by virtue of the bearer's being marked by the presence of dots, punctures, points or pits.", + "xrefs" : [ "medical-dictionary:medical-dictionary" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "small volume", + "val" : "stippled", "xrefs" : [ ] }, { - "pred" : "hasExactSynonym", - "val" : "low volume", + "pred" : "hasRelatedSynonym", + "val" : "spotted", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "dotted", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000595" } ] }, "type" : "CLASS", - "lbl" : "decreased volume" + "lbl" : "punctate" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002578", + "id" : "http://purl.obolibrary.org/obo/RO_0002430", "meta" : { "definition" : { - "val" : "Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.", + "val" : "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "directly regulates (processual)" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002575", - "val" : "http://purl.obolibrary.org/obo/RO_0002211" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002428" } ] }, "type" : "PROPERTY", - "lbl" : "directly regulates" + "lbl" : "involved in negative regulation of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000112", + "id" : "http://purl.obolibrary.org/obo/PATO_0001513", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001566" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "obsolete humidity sensitivity" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001440", + "id" : "http://purl.obolibrary.org/obo/PATO_0001510", "meta" : { "definition" : { - "val" : "A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an identical molecule in an adjacent cell.", - "xrefs" : [ "GO:GO" ] + "val" : "A functionality quality held by the bearer when the latter is able to perform a regular function(s).", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001511" } ] }, "type" : "CLASS", - "lbl" : "homophilic" + "lbl" : "functional" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000595", + "id" : "http://purl.obolibrary.org/obo/RO_0002431", "meta" : { "definition" : { - "val" : "A volume which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "involved in or reguates" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "OWL does not allow defining object properties via a Union" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in or involved in regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001511", + "meta" : { + "definition" : { + "val" : "A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s).", + "xrefs" : [ "PATC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "defective", + "xrefs" : [ ] + }, { "pred" : "hasExactSynonym", - 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Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.", + "xrefs" : [ "GOC:cjm", "GOC:dos" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "enables activity in", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes activity in" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A protein that enables activity in a cytosol." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "obsolete flooding sensitivity" + "type" : "PROPERTY", + "lbl" : "is active in" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001441", + "id" : "http://purl.obolibrary.org/obo/PATO_0001516", "meta" : { "definition" : { - "val" : "A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an nonidentical molecule in an adjacent cell.", - "xrefs" : [ "GO:GO" ] + "val" : "An optical quality where light rays originating from a point on the object converge.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Focus_(optics)" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "heterophilic" + "lbl" : "focus" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0009966", + "id" : "http://purl.obolibrary.org/obo/PATO_0001517", "meta" : { "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of signal transduction.", - "xrefs" : [ "GOC:sm" ] + "val" : "An optical quality inhering in a bearer by virtue of the bearer's having focus.", + "xrefs" : [ "PATOC:GVG" ] }, - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "regulation of signaling pathway", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "regulation of signalling pathway", - "xrefs" : [ "GOC:mah" ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0035466" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "regulation of signal transduction" + "lbl" : "focused" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0009967", + "id" : "http://purl.obolibrary.org/obo/PATO_0001514", "meta" : { "definition" : { - "val" : "Any process that activates or increases the frequency, rate or extent of signal transduction.", - "xrefs" : [ "GOC:sm" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer.", + "xrefs" : [ "PATOC:cjm" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "up regulation of signal transduction", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "positive regulation of signalling pathway", - "xrefs" : [ "GOC:mah" ] - }, { - "pred" : "hasExactSynonym", - "val" : "upregulation of signal transduction", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "activation of signal transduction", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "stimulation of signal transduction", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "up-regulation of signal transduction", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "positive regulation of signaling pathway", - 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"val" : "negative regulation of signalling pathway", - "xrefs" : [ "GOC:mah" ] - }, { - "pred" : "hasExactSynonym", - "val" : "down-regulation of signal transduction", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "inhibition of signal transduction", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "negative regulation of signaling pathway", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "down regulation of signal transduction", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "downregulation of signal transduction", + "val" : "murky", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0035467" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "negative regulation of signal transduction" + "lbl" : "variable color" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000529", + "id" : "http://purl.obolibrary.org/obo/RO_0002427", "meta" : { + "definition" : { + "val" : "inverse of causally upstream of or within", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, - "type" : "CLASS", - "lbl" : "obsolete drug sensitive" + "type" : "PROPERTY", + "lbl" : "causally downstream of or within" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000528", + "id" : "http://purl.obolibrary.org/obo/RO_0002428", "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some 'p' and p' regulates some p", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002429", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some p' and p' positively regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002428" } ] }, - "type" : "CLASS", - "lbl" : "obsolete drug insensitive" + "type" : "PROPERTY", + "lbl" : "involved in positive regulation of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001859", + "id" : "http://purl.obolibrary.org/obo/PATO_0001529", "meta" : { "definition" : { - "val" : "A coordination which is relatively high.", + "val" : "A spatiotemporal quality inhering in a cell.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high coordination", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001860" } ] }, "type" : "CLASS", - "lbl" : "increased coordination" + "lbl" : "cellular spatiotemporal quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000521", + "id" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "meta" : { + "definition" : { + "val" : "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2.", + "xrefs" : [ "PATOC:CJM" ] + }, "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "obsolete drug sensitivity value" + "type" : "PROPERTY", + "lbl" : "has_cross_section" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001853", + "id" : "http://purl.obolibrary.org/obo/PATO_0001523", "meta" : { "definition" : { - "val" : "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of cerebral spinal fluid.", - "xrefs" : [ "PATOC:mh" ] + "val" : "A physical quality which is equal to the quotient of the speed of a sound wave divided by its wavelength.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sound_wavelength" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "hydrocephalic" + "lbl" : "sound wavelength" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001854", + "id" : "http://purl.obolibrary.org/obo/PATO_0001524", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being situated at right angles to the horizon.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A sound frequency in the range of 0-20 Hz.", + "xrefs" : [ "studyphysics:studyphysics" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -46768,44 +47015,18 @@ } ] }, "type" : "CLASS", - "lbl" : "vertical" + "lbl" : "intrasonic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000520", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete radiation sensitivity value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000523", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete insecticide sensitivity value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001851", + "id" : "http://purl.obolibrary.org/obo/PATO_0001521", "meta" : { "definition" : { - "val" : "A structure quality inhering in a bearer by virtue of the bearer's exhibiting transient abnormal enlargement, not due to cell proliferation.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A physical quality inhering in a sound wave by virtue of the maximum magnitude (value without regard to sign) of its disturbance.", + "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "swelling", + "pred" : "hasBroadSynonym", + "val" : "loudness", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -46814,97 +47035,42 @@ } ] }, "type" : "CLASS", - "lbl" : "swollen" + "lbl" : "sound amplitude" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001852", + "id" : "http://purl.obolibrary.org/obo/PATO_0001522", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A physical quality inhering in sound by virtue of the bearer's travelling speed in a given medium under specified conditions.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sound_speed" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "dislocation", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "luxation", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "luxated", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "relational dislocated quality", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0002159" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0002158" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001479" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "dislocated" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000522", - "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete herbicide sensitivity value" + "lbl" : "sound speed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001857", + "id" : "http://purl.obolibrary.org/obo/PATO_0001527", "meta" : { "definition" : { - "val" : "A shape quality in a bearer by virtue of the bearer's curving inward.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A sound amplitude which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001355" - } ] - }, - "type" : "CLASS", - "lbl" : "concave" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000525", - "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete soil composition sensitivity value" + "lbl" : "quiet" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001858", + "id" : "http://purl.obolibrary.org/obo/PATO_0001528", "meta" : { "definition" : { - "val" : "A functionality quality inhering in a bearer by virtue of being not completely paralysed.", + "val" : "A sound amplitude which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], @@ -46914,26 +47080,28 @@ } ] }, "type" : "CLASS", - "lbl" : "partially paralysed" + "lbl" : "loud" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000524", + "id" : "http://purl.obolibrary.org/obo/PATO_0001525", "meta" : { + "definition" : { + "val" : "A sound frequency in the range of 20 to 20.000 Hz.", + "xrefs" : [ "url:http://www.studyphysics.ca/" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete plant growth hormone sensitivity value" + "lbl" : "sonic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001855", + "id" : "http://purl.obolibrary.org/obo/PATO_0001526", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being in the plane of the horizon.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A sound frequency in the range of 20 000 + Hz.", + "xrefs" : [ "studyphysics:studyphysics" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -46942,1238 +47110,1653 @@ } ] }, "type" : "CLASS", - "lbl" : "horizontal" + "lbl" : "ultrasonic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000527", + "id" : "http://purl.obolibrary.org/obo/RO_0002418", "meta" : { + "definition" : { + "val" : "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "influences (processual)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative drug sensitivity value" + "type" : "PROPERTY", + "lbl" : "causally upstream of or within" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001856", + "id" : "http://purl.obolibrary.org/obo/RO_0002411", "meta" : { "definition" : { - "val" : "An oriented quality inhering in a bearer by virtue of the bearer's being turned inward upon itself.", - "xrefs" : [ "die.net:die.net" ] + "val" : "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "For example, a tubular organ or part." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, - "type" : "CLASS", - "lbl" : "introverted" + "type" : "PROPERTY", + "lbl" : "causally upstream of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000526", + "id" : "http://purl.obolibrary.org/obo/RO_0002412", "meta" : { + "definition" : { + "val" : "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute drug sensitivity value" + "type" : "PROPERTY", + "lbl" : "immediately causally upstream of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001850", + "id" : "http://purl.obolibrary.org/obo/PATO_0001520", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being fibrous tissue that replaces normal tissue destroyed by injury or disease.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "The frequency of transmitted vibrations.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "scarred" + "lbl" : "sound frequency" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002566", + "id" : "http://purl.obolibrary.org/obo/RO_0002410", "meta" : { "definition" : { - "val" : "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b", + "val" : "This relation groups causal relations between material entities and causal relations between processes", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "causally influences (material entity to material entity)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - } ] - }, - "type" : "PROPERTY", - "lbl" : "causally influences" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000539", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, - "type" : "CLASS", - "lbl" : "obsolete drought sensitivity value" + "type" : "PROPERTY", + "lbl" : "causally related to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001864", + "id" : "http://purl.obolibrary.org/obo/RO_0002404", "meta" : { + "definition" : { + "val" : "inverse of upstream of", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001865" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS" + "type" : "PROPERTY", + "lbl" : "causally downstream of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000532", + "id" : "http://purl.obolibrary.org/obo/RO_0002405", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "obsolete micronutrient sensitivity value" + "type" : "PROPERTY", + "lbl" : "immediately causally downstream of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001865", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_7742", "meta" : { - "definition" : { - "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. 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These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.", + "xrefs" : [ "GOC:pdt" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low coordination", + "val" : "molecular function", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "molecular process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0005554" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "molecular_function" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001859" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. 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See the specification of these instances for more detailed definitions of each enumerated value.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000546" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "curation status specification" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Bill Bug" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "OBI_0000266" } ] }, "type" : "CLASS", - "lbl" : "photosensitive" + "lbl" : "curation status specification" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001879", + "id" : "http://purl.obolibrary.org/obo/pato#cell_quality", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "cell_quality" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_7776", "meta" : { - "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter U.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "horseshoe", + "pred" : "hasExactSynonym", + "val" : "jawed vertebrates", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "horseshoe shaped", + "val" : "Gnathostomata", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "U-shaped" + "lbl" : "Gnathostomata " }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000546", + "id" : "http://www.geneontology.org/formats/oboInOwl#consider", + "type" : "PROPERTY", + "lbl" : "consider" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0005022", "meta" : { "definition" : { - "val" : "A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A diameter that remains constant throughout the extent of an entity.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "photoresistant", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-10-17T14:15:59Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000547" } ] }, "type" : "CLASS", - "lbl" : "photoinsensitive" + "lbl" : "uniform diameter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001877", + "id" : "http://purl.obolibrary.org/obo/PATO_0005023", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle; attached at the broad end.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is in the parasagittal plane.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "spear-shaped", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-10-17T14:21:30Z" } ] }, "type" : "CLASS", - "lbl" : "lanceolate" + "lbl" : "parasagittal orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000549", + "id" : "http://purl.obolibrary.org/obo/PATO_0005024", "meta" : { + "definition" : { + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed along the longitudinal or anterior-posterior axis.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-10-17T14:24:19Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete far red light sensitivity value" + "lbl" : "longitudinal orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001878", + "id" : "http://purl.obolibrary.org/obo/PATO_0005020", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A shape quality inhering on a bearer by virtue of a bearer's shape lacking in pattern or uniformity; for example, it may have sides of different lengths, different curvatures, or unequal angles.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "S-shaped", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "sigmoidal", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-10-03T10:23:17Z" } ] }, "type" : "CLASS", - "lbl" : "sigmoid" + "lbl" : "irregularly shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000548", + "id" : "http://purl.obolibrary.org/obo/PATO_0005021", "meta" : { + "definition" : { + "val" : "Cuspidate quality inhering in a bearer by virtue of the bearer's possessing a single cusp.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-10-17T14:14:04Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete blue light sensitivity value" + "lbl" : "unicuspidate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001871", + "id" : "http://purl.obolibrary.org/obo/IAO_0000030", + "type" : "CLASS", + "lbl" : "information content entity" + }, { + "id" : "http://purl.obolibrary.org/obo/pato#value_slim", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Value slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051338", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having the shape of a kidney.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.", + "xrefs" : [ "EC:2.-.-.-", "GOC:ai" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "kidney-shaped", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "bean shaped", + "val" : "transferase regulator", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead." } ] }, "type" : "CLASS", - "lbl" : "reniform" + "lbl" : "regulation of transferase activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001872", + "id" : "http://purl.obolibrary.org/obo/GO_0051347", "meta" : { "definition" : { - "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resemblance to a cube (a 3-D shape with a square cross section).", - "xrefs" : [ "PATOC:MAH" ] + "val" : "Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor.", + "xrefs" : [ "GOC:ai" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "block-like", + "pred" : "hasNarrowSynonym", + "val" : "activation of transferase activity", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "cuboidal", + "val" : "transferase activator", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of transferase activity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "cuboid" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000541", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete photosensitivity value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000540", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete flooding sensitivity value" + "lbl" : "positive regulation of transferase activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001870", + "id" : "http://purl.obolibrary.org/obo/GO_0051348", "meta" : { "definition" : { - "val" : "A shape quality inhering in a circular disk by virtue of the bearer's having a segment of another circle removed from its edge, so that what remains is a shape enclosed by two circular arcs of different diameters which intersect at two points (usually in such a manner that the enclosed shape does not include the center of the original circle).", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Crescent" ] + "val" : "Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor.", + "xrefs" : [ "GOC:ai" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "xrefs" : [ { - "val" : "Image:http://upload.wikimedia.org/wikipedia/commons/7/74/Crescent.svg" - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "crescentic", + "val" : "transferase inhibitor", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "bow-shaped", + "pred" : "hasExactSynonym", + "val" : "downregulation of transferase activity", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "lunate", + "pred" : "hasExactSynonym", + "val" : "down regulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of transferase activity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead." } ] }, "type" : "CLASS", - "lbl" : "crescent-shaped" + "lbl" : "negative regulation of transferase activity" }, { - "id" : "http://purl.obolibrary.org/obo/pato#singly_occurring_form_of", + "id" : "http://purl.obolibrary.org/obo/PATO_0005008", "meta" : { - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "monadic_form_of", - "xrefs" : [ ] - } ], + "definition" : { + "val" : "A 3-D shape inhering in a bearer by virtue of the bearer's having dentition characterized by low-crowned teeth. Human teeth are brachydont.", + "xrefs" : [ "DOI:10.1111/j.1469-185X.2011.00176.x" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them." + "val" : "Need to include axiom: brachydont inheres_in some ('tooth crown' and bearer_of 'decreased \nheight')." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-09-09T12:59:35Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "singly_occurring_form_of" + "type" : "CLASS", + "lbl" : "brachydont" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001408", + "id" : "http://purl.obolibrary.org/obo/PATO_0005009", "meta" : { "definition" : { - "val" : "A cellular quality inhering in a bearer by virtue of the bearer's having thin, tail-like projections extending outwards from the cell body.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Ciliated" ] + "val" : "A 3-D shape inhering in a bearer by virtue of the bearer's having an entity in the form of a molar tooth.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-09-09T13:03:00Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "ciliatedness" + "lbl" : "molariform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001409", + "id" : "http://purl.obolibrary.org/obo/PATO_0005004", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's resembling a long tapered rod.", - "xrefs" : [ "Biology-online:Biology-online" ] + "val" : "A shape that is almost an ellipse.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-09-09T12:36:15Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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South is the polar opposite of north and is perpendicular to east and west.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/South" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0045091" } ] }, "type" : "CLASS", - "lbl" : "obsolete thermosensitive" + "lbl" : "south" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001888", + "id" : "http://purl.obolibrary.org/obo/PATO_0045094", "meta" : { "definition" : { - "val" : "A quality of a liquid inhering in a bearer by virtue of the bearer's ability to mix with (dissolve in) another liquid.", - "xrefs" : [ "Chemicool:Chemicool" ] + "val" : "West is one of the four cardinal directions or points of the compass. It is the opposite direction from east.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/West" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0045092" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "miscibility" + "lbl" : "west" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001404", + "id" : "http://purl.obolibrary.org/obo/PATO_0045090", "meta" : { "definition" : { - "val" : "A cellular quality inhering in a bearer by virtue of bearer's number of nuclei.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The four cardinal directions or cardinal points are the directions north, east, south, and west, commonly denoted by their initials, N, E, S, W. East and west are at right angles to north and south, with east being in the clockwise direction of rotation from north and west being directly opposite east.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Cardinal_direction" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "nucleate quality" + "lbl" : "cardinal direction" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000559", + "id" : "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "FlyBase Drosophila GO ribbon slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000169", "meta" : { + "definition" : { + "val" : "An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { + } ] + }, + "type" : "CLASS", + "lbl" : "viability" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000168", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute size value" + "lbl" : "obsolete relative time" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001889", + "id" : "http://purl.obolibrary.org/obo/PATO_0001499", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having the border, edge, or outline cut into a series of segments of circles resembling a scallop-shell.", - "xrefs" : [ "Oxford:EnglishDictionary" ] + "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter).", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "crenulate", + "val" : "globular", "xrefs" : [ ] }, { - "pred" : "hasExactSynonym", - "val" : "crenate", + "pred" : "hasRelatedSynonym", + "val" : "rotund", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000408" } ] }, "type" : "CLASS", - "lbl" : "scalloped" + "lbl" : "spherical" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001405", + "id" : "http://purl.obolibrary.org/obo/PATO_0001493", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001494" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "hypertrophic growth" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000161", "meta" : { "definition" : { - "val" : "A nucleate quality inhering in a bearer by virtue of the bearer's having no nucleus.", - "xrefs" : [ "Biology-online:Biology-online" ] + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.", + "xrefs" : [ "PATOC:melissa" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "anucleate" + "lbl" : "rate" }, { - "id" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", + "id" : "http://purl.obolibrary.org/obo/PATO_0045070", "meta" : { + "definition" : { + "val" : "A tolerance to an external stimulus which is relatively normal or average", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" } ] }, - "type" : "PROPERTY", - "lbl" : "has_relative_magnitude" + "type" : "CLASS", + "lbl" : "normal tolerance to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000550", + "id" : "http://purl.obolibrary.org/obo/PATO_0000160", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -48184,68 +48767,56 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete red light sensitivity value" + "lbl" : "obsolete relative incidence" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001882", + "id" : "http://purl.obolibrary.org/obo/PATO_0001494", "meta" : { - "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a slug.", - "xrefs" : [ "PATOC:CJM" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001493" } ] }, "type" : "CLASS", - "lbl" : "limaciform" + "lbl" : "hypotrophic growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001883", + "id" : "http://purl.obolibrary.org/obo/PATO_0045071", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's gradually becoming thicker towards the end.", - "xrefs" : [ "MP:0000576" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "club-shaped", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "clubbed", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "club-like", + "val" : "A tonicity which is relatively normal or average", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001797" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "clavate" + "lbl" : "normal tonicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001880", + "id" : "http://purl.obolibrary.org/obo/PATO_0001491", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having a tail or tail-like projection.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "A paedomorphic growth quality which is due to a reduced rate.", + "xrefs" : [ "PATOC:mh" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "caudal", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "tailed", + "val" : "neotenic growth", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -48254,9 +48825,9 @@ } ] }, "type" : "CLASS", - "lbl" : "caudate" + "lbl" : "neotenous growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000552", + "id" : "http://purl.obolibrary.org/obo/PATO_0000163", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -48267,200 +48838,153 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute temperature sensitivity value" + "lbl" : "obsolete relative rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001881", + "id" : "http://purl.obolibrary.org/obo/PATO_0000162", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's forming two equal obtuse triangles with a short side in common.", - "xrefs" : [ "ISBN:0881923214", "RKC:RKC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "sagittate", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Gradually enlarged at the base, like the head of an arrow." + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "arrow-shaped" + "lbl" : "obsolete absolute rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000551", + "id" : "http://purl.obolibrary.org/obo/PATO_0045072", "meta" : { + "definition" : { + "val" : "A turgor which is relatively normal or average", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete u v light sensitivity value" + "lbl" : "normal turgor" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0003824", + "id" : "http://purl.obolibrary.org/obo/PATO_0001492", "meta" : { - "definition" : { - "val" : "Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.", - "xrefs" : [ "GOC:vw", "ISBN:0198506732" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant" ], - "xrefs" : [ { - "val" : "Wikipedia:Enzyme" - } ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "enzyme activity", - "xrefs" : [ "GOC:dph", "GOC:tb" ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "molecular_function" + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." } ] }, "type" : "CLASS", - "lbl" : "catalytic activity" + "lbl" : "growth rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001817", + "id" : "http://purl.obolibrary.org/obo/PATO_0001497", "meta" : { "definition" : { - "val" : "A fatigability which is relatively low.", + "val" : "A reproductive quality inhering in the young of an animal by virtue of the bearer's disposition to survive and develop normally.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low fatigability", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001816" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased fatigability" + "lbl" : "brood viability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000969", + "id" : "http://purl.obolibrary.org/obo/PATO_0000165", "meta" : { "definition" : { - "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally small.", - "xrefs" : [ "Answers.com:Answers.com" ] + "val" : "A quality in which events occur in sequence.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "dwarfed", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dwarf-like" + "lbl" : "time" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001818", + "id" : "http://purl.obolibrary.org/obo/PATO_0000164", "meta" : { - "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002026" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "progressive" + "lbl" : "obsolete relative temporal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000968", + "id" : "http://purl.obolibrary.org/obo/PATO_0001498", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001439" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "obsolete albino value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001815", - "meta" : { - "definition" : { - "val" : "A strength quality inhering in a bearer by virtue of the bearer's disposition to lose strength.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "fatigability" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001816", + "id" : "http://purl.obolibrary.org/obo/PATO_0001495", "meta" : { "definition" : { - "val" : "A fatigability which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A concave quality inhering in a bearer by virtue of the bearer's shape being a V-shaped cut.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high fatigability", + "pred" : "hasRelatedSynonym", + "val" : "indented", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001817" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased fatigability" + "lbl" : "notched" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001819", + "id" : "http://purl.obolibrary.org/obo/PATO_0000167", "meta" : { "definition" : { - "val" : "A morphological quality inhering in a bearer by virtue of the bearer's absence or closure of a normal body orifice or tubular passage.", + "val" : "A limited, often assigned period of activity.", "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "atresia", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "atretic" + "lbl" : "obsolete bouts" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000961", + "id" : "http://purl.obolibrary.org/obo/PATO_0000166", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -48471,311 +48995,253 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative opacity value" + "lbl" : "obsolete absolute time" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000960", + "id" : "http://purl.obolibrary.org/obo/PATO_0001496", "meta" : { + "definition" : { + "val" : "A reproductive quality inhering in the young of an animal by virtue of the bearer's being cared for at one time.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute opacity" + "lbl" : "brood quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001810", + "id" : "http://purl.obolibrary.org/obo/PATO_0045077", "meta" : { "definition" : { - "val" : "A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by one or more creases in a normally smooth surface.", - "xrefs" : [ "url:http://www.thefreedictionary.com/wrinkled" ] + "val" : "A variability of size which is relatively normal or average", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "wrinkled" + "lbl" : "normal variability of size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000963", + "id" : "http://purl.obolibrary.org/obo/PATO_0045078", "meta" : { "definition" : { - "val" : "A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "clouding", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "non-transparent", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "cloudy", + "val" : "A variability of temperature which is relatively normal or average", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000964" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "opaque" + "lbl" : "normal variability of temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000962", + "id" : "http://purl.obolibrary.org/obo/PATO_0045079", "meta" : { + "definition" : { + "val" : "A velocity which is relatively normal or average", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute opacity value" + "lbl" : "normal velocity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001813", + "id" : "http://purl.obolibrary.org/obo/PATO_0045073", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's lack elastic tension that facilitate response to stimuli.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality of aprocess that has a value that is normal or average.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-21T14:11:01Z" } ] }, "type" : "CLASS", - "lbl" : "atonicity" + "lbl" : "normal process quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000965", + "id" : "http://purl.obolibrary.org/obo/PATO_0001490", "meta" : { "definition" : { - "val" : "A pattern quality of inhering in a bearer by virtue of the correspondence in size, shape, and relative position of the bearer's parts on opposite sides of a dividing line or median plane or about a center or axis.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A growth quality of a process inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced or increased growth.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "symmetry" + "lbl" : "heterochronic growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000964", + "id" : "http://purl.obolibrary.org/obo/PATO_0045074", "meta" : { "definition" : { - "val" : "A optical quality inhering in a bearer by virtue of the bearer's lacking opacity.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "hyaline", - 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}, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "wavy", + "val" : "A variability of rate which is relatively normal or average", "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "undulating", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "waved", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "sinuate", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "rippled", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "undulated", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001610" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001939" - } ] - }, - "type" : "CLASS", - "lbl" : "undulate" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001811", - "meta" : { - "definition" : { - "val" : "A relaxation which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high relaxation", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "GO has now relevant relation terms which should be used instead." + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "obsolete increased relaxation" + "lbl" : "normal variability of rate" }, { - 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}, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete symmetry value" + "lbl" : "obsolete body position" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0010562", + "id" : "http://purl.obolibrary.org/obo/PATO_0045080", "meta" : { "definition" : { - "val" : "Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.", - "xrefs" : [ "GOC:dph", "GOC:tb" ] + "val" : "A virulence which is relatively normal or average", + "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" } ] }, "type" : "CLASS", - 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"val" : "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of male and external sexual characteristics of female.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A viscosity which is relatively normal or average", + "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "male pseudohermaphrodite" + "lbl" : "normal viscosity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000979", + "id" : "http://purl.obolibrary.org/obo/PATO_0000171", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -48786,77 +49252,77 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete porosity value" + "lbl" : "obsolete absolute yield" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001829", + "id" : "http://purl.obolibrary.org/obo/PATO_0000174", "meta" : { - "definition" : { - "val" : "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of female and external sexual characteristics of male.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "female pseudohermaphrodite" + "lbl" : "obsolete autonomic function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001826", + "id" : "http://purl.obolibrary.org/obo/PATO_0045082", "meta" : { "definition" : { - "val" : "A wetness quality that is relatively low.", - 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"xrefs" : [ "WordNet:WordNet" ] + "val" : "A wetness which is relatively normal or average", + "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "pseudohermaphrodite" + "lbl" : "normal wetness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001820", + "id" : "http://purl.obolibrary.org/obo/PATO_0000173", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - 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"synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "unperforated", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002112" } ] }, "type" : "CLASS", - "lbl" : "imperforate" + "lbl" : "obsolete behavioral function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000971", + "id" : "http://purl.obolibrary.org/obo/PATO_0000178", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute permeability" + "lbl" : "obsolete relative function" }, { - 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Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0051869" } ] }, "type" : "CLASS", - "lbl" : "light phase" + "lbl" : "response to stimulus" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001836", + "id" : "http://purl.obolibrary.org/obo/pato#absent_slim", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer with some kind of aperture or opening that is blocked or clogged.", - "xrefs" : [ "answers.com:answers.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Absent/present slim" } ] }, - "type" : "CLASS", - "lbl" : "congested" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000502", + "id" : "http://purl.obolibrary.org/obo/PATO_0000194", "meta" : { - 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"xrefs" : [ "answers.com:answers.com" ] + "val" : "A speed which is relatively normal or average", + "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "abrased" + "lbl" : "normal speed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000519", + "id" : "http://purl.obolibrary.org/obo/PATO_0000192", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -49794,148 +50175,186 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete humidity sensitivity value" + "lbl" : "obsolete locomotor_activity" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0098590", + "id" : "http://purl.obolibrary.org/obo/PATO_0045064", "meta" : { "definition" : { - 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}, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative disease sensitivity value" + "lbl" : "sensitivity of a process to oxygen" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000996", + "id" : "http://purl.obolibrary.org/obo/PATO_0000124", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -49946,37 +50365,58 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute viscosity value" + "lbl" : "obsolete relative length" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000511", + "id" : "http://purl.obolibrary.org/obo/PATO_0001455", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's dependence on oxygen.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001456" + } ] + }, + "type" : "CLASS", + "lbl" : "aerobic" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000127", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute disease sensitivity value" + "lbl" : "obsolete relative mass" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001841", + "id" : "http://purl.obolibrary.org/obo/PATO_0001456", "meta" : { "definition" : { - "val" : "An intensity which is characterized by temporary abatement in severity.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's independence on oxygen.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001455" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "remittent intensity" + "lbl" : "anaerobic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000995", + "id" : "http://purl.obolibrary.org/obo/PATO_0000126", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -49987,178 +50427,163 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete viscosity value" + "lbl" : "obsolete absolute mass" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000998", + "id" : "http://purl.obolibrary.org/obo/PATO_0000129", "meta" : { - "definition" : { - "val" : "A viscosity quality inhering in a bearer by virtue of the bearer's having viscosity.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "viscous" + "lbl" : "obsolete absolute weight" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000514", + "id" : "http://purl.obolibrary.org/obo/PATO_0000128", "meta" : { + "definition" : { + "val" : "A physical quality inhering in a bearer that has mass near a gravitational body.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Weight" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete intolerant value" + "lbl" : "weight" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001846", + "id" : "http://purl.obolibrary.org/obo/PATO_0001459", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001460" } ] }, "type" : "CLASS", - "lbl" : "tangled" + "lbl" : "aerobic (for occurrence)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001847", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_2759", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "stenosis", + "val" : "eukaryotes", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eucarya", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eucaryotae", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "eukaryotes", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "stricture", + "val" : "eucaryotes", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eukarya", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eukaryotae", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "stenotic", + "val" : "eucaryotes", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001837" - } ] - }, - "type" : "CLASS", - "lbl" : "constricted" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000997", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "hasRelatedSynonym", + "val" : "Eucaryotae", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete relative viscosity value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000513", - "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "insensitive", + "val" : "eukaryotes", "xrefs" : [ ] }, { "pred" : "hasRelatedSynonym", - "val" : "resistant", + "val" : "Eukaryotae", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000516" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "hasRelatedSynonym", + "val" : "eukaryotes", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eucarya", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eukarya", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "insensitive toward" + "lbl" : "Eukaryota" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001844", + "id" : "http://purl.obolibrary.org/obo/PATO_0001450", "meta" : { "definition" : { - "val" : "An acidity which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of extracellular fluid.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "oedema", + "xrefs" : [ ] + }, { "pred" : "hasExactSynonym", - "val" : "high acidity", + "val" : "oedematous", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001843" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "increased acidity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000516", - "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having sensitivity toward an external stimulus.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "sensitive", + "val" : "edemic", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "edema", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "oedemic", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000513" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sensitive toward" + "lbl" : "edematous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000515", + "id" : "http://purl.obolibrary.org/obo/PATO_0001453", "meta" : { "definition" : { - "val" : "A resistance quality inhering in a bearer by virtue of its disposition to endure or being insensitive to a stimulus.", + "val" : "An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "tolerant", + "val" : "detached", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -50167,39 +50592,37 @@ } ] }, "type" : "CLASS", - "lbl" : "tolerant to" + "lbl" : "detached from" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001845", + "id" : "http://purl.obolibrary.org/obo/PATO_0000121", "meta" : { - "definition" : { - "val" : "A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm lacking pattern.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "irregular rhythm" + "lbl" : "obsolete relative height" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000999", + "id" : "http://purl.obolibrary.org/obo/PATO_0001454", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's successive change from one thing or state to another and back again.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A sensitivity quality inhering in a bearer by virtue of the bearer's dependence on oxygen.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "alternation" + "lbl" : "sensitivity to oxygen" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000990", + "id" : "http://purl.obolibrary.org/obo/PATO_0000120", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -50210,24 +50633,39 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete consistent" + "lbl" : "obsolete absolute height" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000992", + "id" : "http://purl.obolibrary.org/obo/PATO_0001451", "meta" : { "definition" : { - "val" : "A physical quality of a liquid inhering in a bearer by virtue of the bearer's disposition to internal resistance to flow.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An extended swelling in plant organs caused primarily by an excessive accumulation of water.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "oedemic", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "edemic", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "oedematous", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "viscosity" + "lbl" : "obsolete edematous (sensu botany)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000991", + "id" : "http://purl.obolibrary.org/obo/PATO_0000123", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -50238,583 +50676,280 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete inconsistent" + "lbl" : "obsolete absolute length" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000925", + "id" : "http://purl.obolibrary.org/obo/PATO_0000122", "meta" : { + "definition" : { + "val" : "A 1-D extent quality which is equal to the distance between two points.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "'anterior end of organism' is-opposite-of 'posterior end of organism'" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "'increase in temperature' is-opposite-of 'decrease in temperature'" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#is_class_level", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "is_opposite_of" } ] }, - "type" : "PROPERTY", - "lbl" : "is_opposite_of" + "type" : "CLASS", + "lbl" : "closure" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002608", + "id" : "http://purl.obolibrary.org/obo/PATO_0001468", "meta" : { "definition" : { - "val" : "Inverse of 'causal agent in process'", - "xrefs" : [ ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the back or upper surface of an organism.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "curved posterior (human torso)", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "curved superior (human head)", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "process has causal agent" + "type" : "CLASS", + "lbl" : "curved dorsal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000936", + "id" : "http://purl.obolibrary.org/obo/PATO_0001469", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly by having or as if having an end or point cut off.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the abdomen of an organism.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "truncate", + "val" : "curved anterior (human torso)", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "curved inferior (human head)", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -50823,247 +50958,231 @@ } ] }, "type" : "CLASS", - "lbl" : "truncated" + "lbl" : "curved ventral" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000935", + "id" : "http://purl.obolibrary.org/obo/PATO_0000135", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative photosensitivity" + "lbl" : "obsolete relative_angle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000938", + "id" : "http://purl.obolibrary.org/obo/PATO_0000138", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000937" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "organized" + "lbl" : "obsolete absolute orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000937", + "id" : "http://purl.obolibrary.org/obo/PATO_0001466", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking organisation.", + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the front of an organism.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000938" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "curved anterior", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "curved superior (human torso)", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "disorganized" + "lbl" : "curved rostral" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000939", + "id" : "http://purl.obolibrary.org/obo/PATO_0001467", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "definition" : { + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the part of the body from which the tail arises.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "curved posterior", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "curved inferior (human torso)", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete regular shape" + "lbl" : "curved caudal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000930", + "id" : "http://purl.obolibrary.org/obo/PATO_0000137", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "obsolete light_quality sensitivity" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000932", + "id" : "http://purl.obolibrary.org/obo/PATO_0000139", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete far red light sensitivity" + "lbl" : "obsolete relative orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000931", + "id" : "http://purl.obolibrary.org/obo/PATO_0001460", "meta" : { + "definition" : { + "val" : "A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001459" } ] }, "type" : "CLASS", - "lbl" : "obsolete blue light sensitivity" + "lbl" : "anaerobic (for occurrence)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000934", + "id" : "http://purl.obolibrary.org/obo/PATO_0001461", "meta" : { + "definition" : { + "val" : "A physical quality inhering in a liquid by virtue of the bearer's ability to attraction of molecules at its surface as a result of unbalanced molecular cohesive forces.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Surface_tension" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete u v light sensitivity" + "lbl" : "surface tension" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000933", + "id" : "http://purl.obolibrary.org/obo/PATO_0000130", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete red light sensitivity" + "lbl" : "obsolete relative weight" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000947", + "id" : "http://purl.obolibrary.org/obo/PATO_0000132", "meta" : { - "definition" : { - "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "ellipsoid", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "ellipse-shaped", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "oval", - "xrefs" : [ ] + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "hasRelatedSynonym", - "val" : "ovoid", - "xrefs" : [ ] + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "hasExactSynonym", - "val" : "elliptical", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000060" } ] }, - "type" : "CLASS", - "lbl" : "elliptic" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000946", + "id" : "http://purl.obolibrary.org/obo/PATO_0001464", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a somewhat elongated form with approximately parallel sides.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality that is equal to the potential energy per unit charge associated with a static (time-invariant) electric field, also called the electrostatic potential.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Electric_potential" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "oblong" + "lbl" : "electric potential" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000949", + "id" : "http://purl.obolibrary.org/obo/PATO_0000131", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being abnormally flattened or coalesced.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "fasciated" + "lbl" : "obsolete relative size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000948", + "id" : "http://purl.obolibrary.org/obo/PATO_0001465", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having a sinus or rounded lobe at the base.", + "val" : "A malformed quality inhering in a bearer by virtue of the bearer's all-encompassing, grotesque morphological defects.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "cordiform", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "cordate", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Having the shape of heart." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "heart shaped" + "lbl" : "monstrous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000941", + "id" : "http://purl.obolibrary.org/obo/PATO_0001462", "meta" : { "definition" : { - "val" : "A structural quality inhering in a cytoplasm that contains fluid filled cavities.", - "xrefs" : [ "PATOC:mh" ] + "val" : "A quality inhering in a cell's plasma membrane by virtue of the electrical potential difference across it.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Membrane_potential" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "vacuolated" + "lbl" : "membrane potential" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000940", + "id" : "http://purl.obolibrary.org/obo/PATO_0000134", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -51073,339 +51192,394 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete irregular shape" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000943", - "meta" : { - "basicPropertyValues" : [ { - 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"xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a cell's plasma membrane by virtue of a brief fluctuation in the bearer's potential caused by the rapid opening and closing of voltage-gated ion channels.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Action_potential" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "epinastic" + "lbl" : "action potential" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000944", + "id" : "http://purl.obolibrary.org/obo/PATO_0000133", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a sharp or tapered end or point.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object.", + "xrefs" : [ "PATOC:JE" ] }, - 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"val" : "A sensitivity to irradiation which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high sensitivity to irradiation", + "val" : "An elevation which is relatively normal or average", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001807" } ] }, "type" : "CLASS", - "lbl" : "increased sensitivity to irradiation" + "lbl" : "normal elevation" }, { - 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"val" : "A color between white and black colors.", - "xrefs" : [ "http://en.wikipedia.org/wiki/Grey" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "plumbeous", + "val" : "An efficiency which is relatively normal or average.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "grey" + "lbl" : "normal efficiency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000952", + "id" : "http://purl.obolibrary.org/obo/PATO_0045016", "meta" : { "definition" : { - "val" : "A color consisting of dark orange, red, of very low intensity.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Brown" ] + "val" : "An elasticity which is relatively normal or average.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "brown" + "lbl" : "normal elasticity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000951", + "id" : "http://purl.obolibrary.org/obo/PATO_0045017", "meta" : { "definition" : { - "val" : "A color that falls about midway between red and blue in hue.", - 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"xrefs" : [ "answers.com:answers.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "loose" + "lbl" : "obsolete absolute temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000953", + "id" : "http://purl.obolibrary.org/obo/PATO_0001479", "meta" : { - "definition" : { - "val" : "A color hue with high-medium wavelength that of that portion of the visible spectrum lying between red and yellow, evoked in the human observer by radiant energy with wavelengths of approximately 585 to 620 nanometers.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Orange" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001852" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "orange" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001803", + "id" : "http://purl.obolibrary.org/obo/RO_0003001", "meta" : { "definition" : { - "val" : "A photosensitivity quality inhering in a bearer by virtue of the bearer's disposition to being susceptible to damage by light.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "a produced_by b iff some process that occurs_in b has_output a.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "xrefs" : [ { + "val" : "RO:0003001" + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "produced_by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" } ] }, - "type" : "CLASS", - "lbl" : "phototoxic" + "type" : "PROPERTY", + "lbl" : "produced_by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001800", + "id" : "http://purl.obolibrary.org/obo/PATO_0000146", "meta" : { "definition" : { - "val" : "A composition quality inhering in an bearer by virtue of the quantities or relative ratios of water of the inhering entity.", + "val" : "A physical quality of the thermal energy of a system.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], @@ -51415,58 +51589,35 @@ } ] }, "type" : "CLASS", - "lbl" : "water composition" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000956", - "meta" : { - "definition" : { - "val" : "A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000955" - } ] - }, - "type" : "CLASS", - "lbl" : "sterile" + "lbl" : "temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000955", + "id" : "http://purl.obolibrary.org/obo/PATO_0000149", "meta" : { - "definition" : { - "val" : "A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000956" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "fertile" + "lbl" : "obsolete relative temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001801", + "id" : "http://purl.obolibrary.org/obo/PATO_0001477", "meta" : { "definition" : { - "val" : "A composition quality inhering in an bearer by virtue of the reduction in amount of water the bearer contains.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Dehydrated" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being drawn in or pulled back from any given point.", + "xrefs" : [ "Dictionary.com:Dictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "dry", + "pred" : "hasBroadSynonym", + "val" : "moved", "xrefs" : [ ] }, { - "pred" : "hasExactSynonym", - "val" : "dehydrated", + "pred" : "hasRelatedSynonym", + "val" : "retruded", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -51475,22 +51626,24 @@ } ] }, "type" : "CLASS", - "lbl" : "decreased water composition" + "lbl" : "retracted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000903", + "id" : "http://purl.obolibrary.org/obo/PATO_0001478", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being broken down; caved in.", + "xrefs" : [ "Dictionary.com:Dictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete cms-hl type value" + "lbl" : "collapsed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000902", + "id" : "http://purl.obolibrary.org/obo/PATO_0000148", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -51501,132 +51654,222 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete chinsurah boro type value" + "lbl" : "obsolete body temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000905", + "id" : "http://purl.obolibrary.org/obo/RO_0003000", "meta" : { + "definition" : { + "val" : "a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "xrefs" : [ { + "val" : "RO:0003000" + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "produces" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue." } ] }, - "type" : "CLASS", - "lbl" : "obsolete f1 fertile" + "type" : "PROPERTY", + "lbl" : "produces" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000904", + "id" : "http://purl.obolibrary.org/obo/PATO_0001471", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001665" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "obsolete wild abortive value" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000907", + "id" : "http://purl.obolibrary.org/obo/PATO_0001472", "meta" : { + "definition" : { + "val" : "A depth which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low depth", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "shallow", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001596" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001692" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete f2 fertile" + "lbl" : "decreased depth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000906", + "id" : "http://purl.obolibrary.org/obo/ENVO_00010483", "meta" : { + "definition" : { + "val" : "A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system.", + "xrefs" : [ "DOI:10.1186/2041-1480-4-43", "MA:ma", "ORCID:0000-0002-4366-3088", "URL:http://ontology.buffalo.edu/smith/articles/niches.html" ] + }, "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "F1 infertile", + "pred" : "hasExactSynonym", + "val" : "portion of environmental material", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete f1 sterile" + "lbl" : "environmental material" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000909", + "id" : "http://purl.obolibrary.org/obo/PATO_0000141", "meta" : { + "definition" : { + "val" : "A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "conformation", + "xrefs" : [ "VT:1000738" ] + }, { + "pred" : "hasExactSynonym", + "val" : "relational structural quality", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001452" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete intercross fertile" + "lbl" : "structure" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000908", + "id" : "http://purl.obolibrary.org/obo/PATO_0001470", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity.", + "xrefs" : [ "PATOC:nw" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "ratio", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quotient", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "proportion", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "proportionality", + "xrefs" : [ ] + }, { "pred" : "hasRelatedSynonym", - "val" : "F2 infertile", + "val" : "rate", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Examples: height to weight; brain size to body size. These could all be children of proportionality. Proportions can be measured as ratios. Some measures may be dimensionless. Not all ratios measure proportionality, eg m/s measures velocity which is not a proportion in the sense defined above, it is a quality in its own right." } ] }, "type" : "CLASS", - "lbl" : "obsolete f2 sterile" + "lbl" : "proportionality to" }, { - "id" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", + "id" : "http://purl.obolibrary.org/obo/PATO_0000140", "meta" : { "definition" : { - "val" : "q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "relational spatial quality", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "location", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "placement", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001631" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001032" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'." } ] }, - "type" : "PROPERTY", - "lbl" : "decreased_in_magnitude_relative_to" + "type" : "CLASS", + "lbl" : "position" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000901", + "id" : "http://purl.obolibrary.org/obo/PATO_0001475", "meta" : { + "definition" : { + "val" : "A position which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "backcross infertile", + "val" : "high position", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001476" } ] }, "type" : "CLASS", - "lbl" : "obsolete backcross sterile" + "lbl" : "increased position" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000900", + "id" : "http://purl.obolibrary.org/obo/PATO_0000143", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -51637,13 +51880,32 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete backcross fertile" + "lbl" : "obsolete addictive substance" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0030000", + "id" : "http://purl.obolibrary.org/obo/PATO_0001476", + "meta" : { + "definition" : { + "val" : "A positional which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "low position", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001475" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, "type" : "CLASS", - "lbl" : "biological entity" + "lbl" : "decreased position" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000914", + "id" : "http://purl.obolibrary.org/obo/PATO_0000142", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -51654,22 +51916,29 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete continuant" + "lbl" : "obsolete substance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000913", + "id" : "http://purl.obolibrary.org/obo/PATO_0001473", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's being present in two copies.", + "xrefs" : [ "Dictionary.com:Dictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "doubled", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete qualitative value" + "lbl" : "duplicated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000916", + "id" : "http://purl.obolibrary.org/obo/PATO_0000145", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -51677,503 +51946,436 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a liquid; PATO:0001548 '" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute thickness" + "lbl" : "obsolete liquid substance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000915", + "id" : "http://purl.obolibrary.org/obo/PATO_0001474", "meta" : { "definition" : { - "val" : "A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "An oriented quality inhering in a bearer by virtue of the bearer's axis being positioned forward.", + "xrefs" : [ "bdid:bdid" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "thickness" + "lbl" : "anteverted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000918", + "id" : "http://purl.obolibrary.org/obo/GO_0071944", "meta" : { "definition" : { - "val" : "A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures.", + "xrefs" : [ "GOC:mah" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "cellular_component" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "midori" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-04T01:51:47Z" } ] }, "type" : "CLASS", - "lbl" : "volume" + "lbl" : "cell periphery" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000917", + "id" : "http://purl.obolibrary.org/obo/PATO_0000144", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a solid; 'PATO:0001546'" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative thickness" + "lbl" : "obsolete solid substance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000919", + "id" : "http://purl.obolibrary.org/obo/PATO_0045011", "meta" : { + "definition" : { + "val" : "A contractility which is relatively normal or average.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute volume" + "lbl" : "normal contractility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000910", + "id" : "http://purl.obolibrary.org/obo/PATO_0045012", "meta" : { - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "intercross infertile", + "definition" : { + "val" : "A coordination which is relatively normal or average.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "obsolete intercross sterile" + "lbl" : "normal coordination" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000912", + "id" : "http://purl.obolibrary.org/obo/PATO_0045013", "meta" : { "definition" : { - "val" : "A rate which is relatively high.", - "xrefs" : [ "PATO:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high rate", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "fast rate", + "val" : "A curvature which is relatively normal or average.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000911" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "increased rate" + "lbl" : "normal curvature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000911", + "id" : "http://purl.obolibrary.org/obo/PATO_0045014", "meta" : { "definition" : { - "val" : "A rate which is relatively low.", - "xrefs" : [ "PATO:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "slow rate", + "val" : "A distance which is relatively normal or average.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000912" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased rate" + "lbl" : "normal distance" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0042995", + "id" : "http://purl.obolibrary.org/obo/PATO_0045010", "meta" : { "definition" : { - "val" : "A prolongation or process extending from a cell, e.g. a flagellum or axon.", - "xrefs" : [ "GOC:jl", "http://www.cogsci.princeton.edu/~wn/" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_pir" ], - "synonyms" : [ { - "pred" : "hasBroadSynonym", - "val" : "cellular process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "cellular projection", - "xrefs" : [ ] - }, { - "pred" : "hasBroadSynonym", - "val" : "cell process", + "val" : "A concentration which is relatively normal or average.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/go.owl" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cell projection" + "lbl" : "normal concentration" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0005929", + "id" : "http://purl.obolibrary.org/obo/PATO_0045026", "meta" : { "definition" : { - "val" : "A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body.", - "xrefs" : [ "GOC:cilia", "GOC:curators", "GOC:kmv", "GOC:vw", "ISBN:0198547684", "PMID:16824949", "PMID:17009929", "PMID:20144998" ] + "val" : "A life span which is relatively normal or average.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_generic" ], - "xrefs" : [ { - "val" : "NIF_Subcellular:sao787716553" - }, { - "val" : "Wikipedia:Cilium" + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" }, { - "val" : "FMA:67181" - } ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "microtubule-based flagellum", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "primary cilium", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "eukaryotic flagellum", - "xrefs" : [ ] + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" }, { - "pred" : "hasRelatedSynonym", - "val" : "flagellum", + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "normal life span" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0045027", + "meta" : { + "definition" : { + "val" : "A magnetism which is relatively normal or average.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms." + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0072372" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "cilium" + "lbl" : "normal magnetism" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0005575", + "id" : "http://purl.obolibrary.org/obo/PATO_0045028", "meta" : { "definition" : { - "val" : "A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome).", - "xrefs" : [ "GOC:pdt", "NIF_Subcellular:sao1337158144" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], - "xrefs" : [ { - "val" : "NIF_Subcellular:sao1337158144" - } ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "cell or subcellular entity", + "val" : "A male fertility which is relatively normal or average.", "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" }, { - "pred" : "hasRelatedSynonym", - "val" : "subcellular entity", - "xrefs" : [ "NIF_Subcellular:nlx_subcell_100315" ] + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" }, { - "pred" : "hasExactSynonym", - "val" : "cellular component", + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "normal male fertility" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0045029", + "meta" : { + "definition" : { + "val" : "A male receptivity which is relatively normal or average.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0008372" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code \"no data\" (ND), is used to indicate this." + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "cellular_component" + "lbl" : "normal male receptivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002269", + "id" : "http://purl.obolibrary.org/obo/GO_0110165", "meta" : { "definition" : { - "val" : "A structural quality of the collection or massing of one physical object within another physical object.", - "xrefs" : [ "PATOC:CVC" ] + "val" : "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex.", + "xrefs" : [ "GOC:kmv" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "pooled", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "cellular_component" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-10-26T01:57:02Z" + "val" : "2019-08-12T18:01:37Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "kmv" } ] }, "type" : "CLASS", - "lbl" : "accumulation" + "lbl" : "cellular anatomical entity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000084", + "id" : "http://purl.obolibrary.org/obo/PATO_0000158", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000057" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative rhythym" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002263", + "id" : "http://purl.obolibrary.org/obo/PATO_0000157", "meta" : { - "definition" : { - "val" : "A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group.", - "xrefs" : [ "url:http://en.wikipedia.org/wiki/Dephosphorylation" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-09-16T09:04:21Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002220" } ] }, "type" : "CLASS", - "lbl" : "dephosphorylated" + "lbl" : "obsolete absolute temporal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000083", + "id" : "http://purl.obolibrary.org/obo/PATO_0001488", "meta" : { "definition" : { - "val" : "A quality that exists by virtue of being a particular point in the time of a cycle.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A cellular quality inhering in a cell by virtue of whether the bearer exhibits the ability to move spontaneously.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Term should be obsoleted and the GO term cellular motility should be used instead." } ] }, "type" : "CLASS", - "lbl" : "phase" + "lbl" : "cellular motility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002264", + "id" : "http://purl.obolibrary.org/obo/PATO_0000159", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being arranged in a systematic fashion.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-09-16T10:22:52Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "organization quality" + "lbl" : "obsolete absolute incidence" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000086", + "id" : "http://purl.obolibrary.org/obo/PATO_0001489", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001433" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute sensitivity" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002261", + "id" : "http://purl.obolibrary.org/obo/PATO_0000150", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's location within another entity.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-09-09T09:36:56Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "located in" + "lbl" : "texture" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002262", + "id" : "http://purl.obolibrary.org/obo/PATO_0001482", "meta" : { "definition" : { - "val" : "A quality inhering in a protein or a molecule by virtue of the addition of a phosphate (PO4) group to the bearer.", - "xrefs" : [ "url:http://en.wikipedia.org/wiki/Phosphorylation" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line.", + "xrefs" : [ "Dictionary.com:Dictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-09-16T08:57:56Z" } ] }, "type" : "CLASS", - "lbl" : "phosphorylation" + "lbl" : "prominent" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000050", + "id" : "http://purl.obolibrary.org/obo/PATO_0001483", "meta" : { "definition" : { - "val" : "a core relation that holds between a part and its whole", - "xrefs" : [ ] + "val" : "Absence of an organ, tissue or cell due to failure to develop from a primordium or precursor cell.", + "xrefs" : [ "PATOC:GVG", "PATOC:PortlandMeetingFeb2015" ] }, - "xrefs" : [ { - "val" : "BFO:0000050" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "aplasia", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "undeveloped", + "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "is part of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this day is part of this year (occurrent parthood)" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000031" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "part_of" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000004" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000003" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000002" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "With aplasia, the primordium or precursor develops, but does not proceed in its development to a mature structure" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000020" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000017" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000019" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "part_of" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my brain is part of my body (continuant parthood, two material entities)" - }, { + } ] + }, + "type" : "CLASS", + "lbl" : "aplastic" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001480", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's resembling a sponge in elasticity, absorbency, or porousness.", + "xrefs" : [ "Answers.com:Answers.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "external" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "part of" + "type" : "CLASS", + "lbl" : "spongy" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000085", + "id" : "http://purl.obolibrary.org/obo/PATO_0000152", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation.", + "val" : "A quality inhering in a bearer by virtue of the bearer's sensitivity towards a fixed location or value where a change is observed; upper limit.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "sensitivity", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sensitivity toward" + "lbl" : "threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000088", + "id" : "http://purl.obolibrary.org/obo/PATO_0000151", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -52184,46 +52386,39 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute disease sensitivity" + "lbl" : "obsolete relative texture" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002267", + "id" : "http://purl.obolibrary.org/obo/PATO_0001481", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-10-05T12:34:31Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "edge shape" + "lbl" : "sloped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002268", + "id" : "http://purl.obolibrary.org/obo/PATO_0001486", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being located in a position equidistant from edges.", - "xrefs" : [ "PATOC:OREGON" ] + "val" : "An age quality that exists by virtue of the time (years and months) that the bearer has existed.", + "xrefs" : [ "WordNet:Wordnet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-10-05T01:09:32Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "centered" + "lbl" : "chronological age" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000087", + "id" : "http://purl.obolibrary.org/obo/PATO_0000154", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -52234,918 +52429,800 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete disease sensitivity" + "lbl" : "obsolete pain threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002265", + "id" : "http://purl.obolibrary.org/obo/PATO_0001487", "meta" : { "definition" : { - "val" : "A behavioral quality of a process inhering in a bearer by virtue of the bearer's disposition to exhibit marked activity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A time quality inhering in a bearer by virtue of the bearer's growing old; aging.", + "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-09-21T06:56:58Z" } ] }, "type" : "CLASS", - "lbl" : "behavioural activity" + "lbl" : "senescent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000089", + "id" : "http://purl.obolibrary.org/obo/PATO_0000153", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative disease sensitivity" + "lbl" : "obsolete absolute threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002266", + "id" : "http://purl.obolibrary.org/obo/PATO_0001484", "meta" : { "definition" : { - "val" : "A shape that inheres in a 3 dimensional entity.", - "xrefs" : [ "PATOC:OREGON" ] + "val" : "A quality of a process which occurs near to or not long before the present.", + "xrefs" : [ "WordNet:WordNet" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-10-05T12:31:16Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "3-D shape" + "lbl" : "recent" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000051", + "id" : "http://purl.obolibrary.org/obo/PATO_0000156", "meta" : { - "definition" : { - "val" : "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2.", - "xrefs" : [ "PATOC:CJM" ] - }, - "xrefs" : [ { - "val" : "BFO:0000051" - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this year has part this day (occurrent parthood)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has_part" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "has_part" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my body has part my brain (continuant parthood, two material entities)" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "external" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "has part" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000057" } ] }, - "type" : "PROPERTY", - "lbl" : "has_part" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000080", + "id" : "http://purl.obolibrary.org/obo/PATO_0000155", "meta" : { - "definition" : { - "val" : "A physical quality of a process inhering in a bearer by virtue of the size of the bearer's maximum displacement from the 'normal' position, when periodic motion is taking place.", - "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "amplitude" + "lbl" : "obsolete relative threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002260", + "id" : "http://purl.obolibrary.org/obo/PATO_0001485", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being partially upright in position or posture.", + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together.", "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "compact", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "dense", + "xrefs" : [ ] + }, { "pred" : "hasExactSynonym", - "val" : "semi upright", + "val" : "squashed", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "compressed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-09-08T03:27:21Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001840" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002452" } ] }, "type" : "CLASS", - "lbl" : "semi erect" + "lbl" : "condensed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000082", + "id" : "http://purl.obolibrary.org/obo/PATO_0045022", "meta" : { "definition" : { - "val" : "A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm.", - "xrefs" : [ "reference.com:reference.com" ] + "val" : "A fluid flow which is relatively normal or average.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "persistence" + "lbl" : "normal fluid flow" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000081", + "id" : "http://purl.obolibrary.org/obo/PATO_0045023", "meta" : { + "definition" : { + "val" : "A fluorescence which is relatively normal or average.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001309" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "normal fluorescence" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0005102", + "id" : "http://purl.obolibrary.org/obo/PATO_0045024", "meta" : { "definition" : { - "val" : "Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.", - "xrefs" : [ "GOC:bf", "GOC:ceb", "ISBN:0198506732" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], - "xrefs" : [ { - "val" : "Wikipedia:Ligand_(biochemistry)" - } ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "receptor ligand", - "xrefs" : [ ] - }, { - "pred" : "hasBroadSynonym", - "val" : "receptor binding", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "receptor-associated protein activity", + "val" : "A force which is relatively normal or average.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "molecular_function" + "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Where appropriate, also consider annotating to 'receptor agonist activity ; GO:0048018'." + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "signaling receptor binding" + "lbl" : "normal force" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002274", + "id" : "http://purl.obolibrary.org/obo/PATO_0045025", "meta" : { "definition" : { - "val" : "Multicolored quality inhering in a bearer by virtue of the bearer's being dappled with spots, patches, or blotches of different colors.", - "xrefs" : [ "url:http://www.oed.com/" ] + "val" : "A fragility which is relatively normal or average.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "Luke Slater" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-11-16T11:22:57Z" + "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "mottled" + "lbl" : "normal fragility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000095", + "id" : "http://purl.obolibrary.org/obo/PATO_0045020", "meta" : { + "definition" : { + "val" : "A fertility which is relatively normal or average.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - 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"val" : "2010-11-16T11:24:15Z" + "val" : "2017-12-22T14:16:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "high contrast color pattern" + "lbl" : "normal flexibility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000094", + "id" : "http://purl.obolibrary.org/obo/PATO_0001419", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - 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"val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located at the same continuous distance relative to another object.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A physical quality inhering in a catalyst by virtue of the amount of the catalyst's action.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-10-26T02:07:42Z" } ] }, "type" : "CLASS", - "lbl" : "parallel to" + "lbl" : "catalytic activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002273", + "id" : "http://purl.obolibrary.org/obo/PATO_0001411", "meta" : { "definition" : { - "val" : "Multicolored quality inhering in a bearer by virtue of the bearer's being colored with a variegated pattern resembling marble,.", - "xrefs" : [ "url:http://www.oed.com/" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's having distinct structure.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-11-16T11:17:32Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001412" } ] }, "type" : "CLASS", - "lbl" : "marbled" + "lbl" : "structured" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000096", + "id" : "http://purl.obolibrary.org/obo/PATO_0001412", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - 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"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-01-20T05:39:18Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001416" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "articulated with" + "lbl" : "irregular duration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000099", + "id" : "http://purl.obolibrary.org/obo/PATO_0001418", "meta" : { + "definition" : { + "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's being deficient in alertness or activity.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"xrefs" : [ "PATOC:WD" ] + "val" : "Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.", + "xrefs" : [ "GOC:go_curators", "GOC:isa_complete" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "cell growth and/or maintenance", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "cellular physiological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "cell physiology", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "single-organism cellular process", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044763" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0008151" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-01-20T05:40:29Z" + "val" : "2012-12-11T16:56:55Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0050875" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "janelomax" } ] }, "type" : "CLASS", - "lbl" : "broadly articulated with" + "lbl" : "cellular process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002296", + "id" : "http://purl.obolibrary.org/obo/PATO_0045000", "meta" : { "definition" : { - "val" : "A texture quality inhering in a surface by virtue of the bearer's being marked by the presence of small, shallow, regular depressions called fovae.", - "xrefs" : [ "Book:Book" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "foveolate", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "pitted", + "val" : "A rate which is relatively normal.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-05-17T07:59:30Z" } ] }, "type" : "CLASS", - "lbl" : "foveate" + "lbl" : "normal rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002297", + "id" : "http://purl.obolibrary.org/obo/PATO_0045001", "meta" : { "definition" : { - "val" : "A cellular motility which is lower relative to the normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality of an object that has a value that is normal or average.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-21T14:11:01Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002298" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "decreased cellular motility" + "lbl" : "normal object quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002294", + "id" : "http://purl.obolibrary.org/obo/PATO_0045002", "meta" : { "definition" : { - "val" : "A texture that is uniformly covered in short, oblong, or trench-like depressions.", - "xrefs" : [ "Book:Book" ] + "val" : "An acidity which is relatively normal.", + "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-05-03T03:12:47Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "scrobiculate" + "lbl" : "normal acidity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002295", + "id" : "http://purl.obolibrary.org/obo/PATO_0045003", "meta" : { "definition" : { - "val" : "A surface feature shape inhering in a surface by virtue of the bearer's being divided by ridge-like structures into a number of small, irregular spaces.", - "xrefs" : [ "Book:Book" ] + "val" : "A adhesivity which is relatively normal or average.", + "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -53153,542 +53230,417 @@ "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-05-17T07:57:45Z" + "val" : "2017-12-22T14:16:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "areolate" + "lbl" : "normal adhesivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002298", + "id" : "http://purl.obolibrary.org/obo/PATO_0001435", "meta" : { "definition" : { - "val" : "A cellular motility which is higher relative to the normal or average.", + "val" : "A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002297" } ] }, "type" : "CLASS", - "lbl" : "increased cellular motility" + "lbl" : "attachment quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002299", + "id" : "http://purl.obolibrary.org/obo/PATO_0000103", "meta" : { - "definition" : { - "val" : "A cylindrical shape that is hollow.", - "xrefs" : [ "PATOC:GVG" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "tube-shaped", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "tubulate", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "tube like", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-08T06:33:50Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "tubular" + "lbl" : "obsolete micronutrient sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000066", + "id" : "http://purl.obolibrary.org/obo/PATO_0001436", "meta" : { "definition" : { - "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", - "xrefs" : [ ] + "val" : "An attachment quality inhering in a flower by virtue of the bearer's lacking a stalk, as in flowers or leaves that grow directly from the stem.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sessility_(botany)" ] }, - "xrefs" : [ { - "val" : "BFO:0000066" - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "occurs_in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "occurs in" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "occurs_in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "unfolds_in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "unfolds in" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "external" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", - "val" : "http://purl.obolibrary.org/obo/bfo.owl" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "occurs in" + "type" : "CLASS", + "lbl" : "sessile (sensu botany)" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "id" : "http://purl.obolibrary.org/obo/RO_0002595", "meta" : { "definition" : { - "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "val" : "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", - "val" : "http://purl.obolibrary.org/obo/bfo.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "site of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." } ] }, "type" : "PROPERTY", - "lbl" : "contains process" + "lbl" : "causal relation between material entity and a process" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000062", + "id" : "http://purl.obolibrary.org/obo/PATO_0000102", "meta" : { - "definition" : { - "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "is preceded by" - }, { - "pred" : "http://purl.org/dc/elements/1.1/source", - "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "preceded by" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "preceded_by" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "PROPERTY", - "lbl" : "preceded by" + "type" : "CLASS", + "lbl" : "obsolete macronutrient sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002292", + "id" : "http://purl.obolibrary.org/obo/PATO_0000105", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's underlying structure being capable of change.", - "xrefs" : [ "PATOC:WD" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "transient structure", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-05-03T03:01:59Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "For example, structures undergoing endochondral ossification change in composition from cartilaginous to ossified." } ] }, "type" : "CLASS", - "lbl" : "transient" + "lbl" : "obsolete p h sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002293", + "id" : "http://purl.obolibrary.org/obo/PATO_0001433", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's underlying structure not changing over time.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A quality of a single process which describes the growth of an organism, structure, or group of organisms.", + "xrefs" : [ "PATOC:MAH" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "permanent structure", + "pred" : "hasRelatedSynonym", + "val" : "growth quality of a process", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "growth timing quality", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-05-03T03:03:50Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001489" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "permanent" + "lbl" : "growth quality of occurrent" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000063", + "id" : "http://purl.obolibrary.org/obo/RO_0002596", "meta" : { "definition" : { - "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "val" : "Holds between c and p if and only if c is capable of some activity a, and a regulates p.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "precedes" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "pyrethroid -> growth" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, "type" : "PROPERTY", - "lbl" : "precedes" + "lbl" : "capable of regulating" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002290", + "id" : "http://purl.obolibrary.org/obo/PATO_0001434", "meta" : { + "definition" : { + "val" : "An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring.", + "xrefs" : [ "WordNet:WordNet" ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-04-18T05:11:33Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "aplastic/hypoplastic" + "lbl" : "reproductive quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002291", + "id" : "http://purl.obolibrary.org/obo/PATO_0000104", "meta" : { - "definition" : { - "val" : "Absence of a tissue or organ due to failure to develop.", - "xrefs" : [ "PATO:GVG" ] - }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-04-18T05:17:34Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "agenesis" - }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000019", - "type" : "CLASS", - "lbl" : "quality" + "lbl" : "obsolete osmotic response sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000015", + "id" : "http://purl.obolibrary.org/obo/RO_0002597", "meta" : { "definition" : { - "val" : "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.", + "val" : "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.", "xrefs" : [ ] - } + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] }, - "type" : "CLASS", - "lbl" : "process" + "type" : "PROPERTY", + "lbl" : "capable of negatively regulating" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000048", + "id" : "http://purl.obolibrary.org/obo/PATO_0001439", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's resistance to pressure, being broken, or pierced", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "A contractile quality inhering in a bearer by virtue of the bearer's elastic tension that facilitate response to stimuli.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "toughness", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "impenetrability", + "pred" : "hasExactSynonym", + "val" : "tone", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: we need a clearer differentium between this and contractility - or merge?" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001498" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "hardness" + "lbl" : "tonicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002227", + "id" : "http://purl.obolibrary.org/obo/PATO_0000107", "meta" : { - "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a cup.", - "xrefs" : [ "url:http://www.thefreedictionary.com/cup-shaped" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "cup-like", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-13T04:29:32Z" } ] }, "type" : "CLASS", - "lbl" : "cup-shaped" + "lbl" : "obsolete alkali sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002228", + "id" : "http://purl.obolibrary.org/obo/PATO_0000106", "meta" : { - "definition" : { - "val" : "A tapered shape quality inhering in a bearer by virtue of the bearer's tapering gradually to a sharp point.", - "xrefs" : [ "url:http://www.thefreedictionary.com/acuminate" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-15T09:03:18Z" } ] }, "type" : "CLASS", - "lbl" : "acuminate" + "lbl" : "obsolete acid sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000047", + "id" : "http://purl.obolibrary.org/obo/PATO_0001437", "meta" : { "definition" : { - "val" : "An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A attachment quality inhering in a bearer by virtue of the bearer's inability to move about.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sessile_(zoology)" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "biological sex" + "lbl" : "sessile (sensu zoology)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001378", + "id" : "http://purl.obolibrary.org/obo/PATO_0000109", "meta" : { - "definition" : { - "val" : "A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from a single species.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Autopolyploid" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "autopolyploid" + "lbl" : "obsolete water sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002225", + "id" : "http://purl.obolibrary.org/obo/PATO_0001438", "meta" : { "definition" : { - "val" : "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter L.", - "xrefs" : [ "PATOC:JE" ] + "val" : "A attachment quality inhering in a bearer by virtue of the bearer's having or being supported by a pedicel or pedicle.", + "xrefs" : [ "MedTerms:MedTerms" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-13T04:14:59Z" } ] }, "type" : "CLASS", - "lbl" : "L-shaped" + "lbl" : "pedicellate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002226", + "id" : "http://purl.obolibrary.org/obo/PATO_0000108", "meta" : { - "definition" : { - "val" : "A cylindrical shape quality inhering in a bearer by virtue of the bearer's being imperfectly cylindrical or approximately cylindrical.", - "xrefs" : [ "url:http://www.thefreedictionary.com/Subcylindrical" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-13T04:22:30Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "subcylindrical" + "lbl" : "obsolete salt sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000049", + "id" : "http://purl.obolibrary.org/obo/PATO_0001431", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's possessing or displaying a distinctive feature in type or degree or effect or force.", + "val" : "An emergent molecular quality that arises by virtue of the bearer's disposition to exhibit molecular attraction to another entity in contact.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "stickiness", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "adhesiveness", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "The definition is general enough to cover adhesion arising from different kinds of chemical bonding/forces, although for PATO this term will most commonly used for cellular adhesion. See also GO:0031589 \"cell-substrate adhesion\"." } ] }, "type" : "CLASS", - "lbl" : "intensity" + "lbl" : "adhesivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001379", + "id" : "http://purl.obolibrary.org/obo/PATO_0001432", "meta" : { "definition" : { - "val" : "A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from different species.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Allopolyploidy" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's decomposition into component parts.", + "xrefs" : [ "Medical-dictionary:Medical-dictionary" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "allopolyploidy" + "lbl" : "decayed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002229", + "id" : "http://purl.obolibrary.org/obo/PATO_0000101", "meta" : { - "definition" : { - "val" : "A quadrangular shape quality inhering in a bearer by virtue of the bearer's being approximately rectangular.", - "xrefs" : [ "url:http://dictionary.reference.com/browse/subrectangular?qsrc=2446&o=100074" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-19T12:18:57Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "subrectangular" + "lbl" : "obsolete soil nutrient sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001372", + "id" : "http://purl.obolibrary.org/obo/PATO_0001430", "meta" : { "definition" : { - "val" : "A physical quality that inheres in propagating wave (light or sound) virtue of the bearer's change in direction when passing from one medium to another.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "An medium acidity quality inhering in a solution by virtue of the bearer's a low concentration of H+ ions.", + "xrefs" : [ "chemicool:chemicool" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "refractivity" + "lbl" : "alkaline" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000040", + "id" : "http://purl.obolibrary.org/obo/PATO_0000100", "meta" : { - "definition" : { - "val" : "A quality that is the extent of space between two entities.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "distance" + "lbl" : "obsolete soil composition sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001373", + "id" : "http://purl.obolibrary.org/obo/GO_0030545", "meta" : { "definition" : { - "val" : "A reflectivity quality inhering in a bearer by virtue of the bearer's reflecting lots of light.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed.", + "xrefs" : [ "GOC:ceb" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "glossy", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "shiny", - "xrefs" : [ ] + "xrefs" : [ { + "val" : "MIPS_funcat:18.02.07" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "molecular_function" } ] }, "type" : "CLASS", - "lbl" : "glistening" + "lbl" : "receptor regulator activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002220", + "id" : "http://purl.obolibrary.org/obo/GO_0030546", "meta" : { "definition" : { - "val" : "A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group.", - "xrefs" : [ "wikipedia:en.wikipedia.org/wiki/Phosphorylated" ] + "val" : "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased.", + "xrefs" : [ "GOC:ceb" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "receptor activator activity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002263" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-09T01:50:14Z" + "val" : "molecular_function" } ] }, "type" : "CLASS", - "lbl" : "phosphorylated" + "lbl" : "signaling receptor activator activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000042", + "id" : "http://purl.obolibrary.org/obo/PATO_0000114", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -53699,13 +53651,13 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative distance" + "lbl" : "obsolete temperature sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001370", + "id" : "http://purl.obolibrary.org/obo/PATO_0001446", "meta" : { "definition" : { - "val" : "A coating quality which is sticky or clammy.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A wholeness quality inhering in a bearer by virtue of the bearer's including all its components.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -53714,35 +53666,22 @@ } ] }, "type" : "CLASS", - "lbl" : "viscid" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000041", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete absolutedistance" + "lbl" : "whole" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001371", + "id" : "http://purl.obolibrary.org/obo/PATO_0001447", "meta" : { "definition" : { - "val" : "A composition quality inhering in an bearer by virtue of the bearer's consistency of mucus.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A composition quality inhering in an bearer by virtue of the bearer's being encrusted or impregnated with calcium carbonate (CHEBI:3311).", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "mucous", + "pred" : "hasExactSynonym", + "val" : "calcareous", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "mucinous", + "pred" : "hasNarrowSynonym", + "val" : "calcification", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -53751,221 +53690,245 @@ } ] }, "type" : "CLASS", - "lbl" : "mucoid" + "lbl" : "calcified" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001376", + "id" : "http://purl.obolibrary.org/obo/PATO_0000113", "meta" : { - "definition" : { - "val" : "A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of unique homologous chromosomes.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Monoploid" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "monoploid" + "lbl" : "obsolete radiation sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000044", + "id" : "http://purl.obolibrary.org/obo/RO_0002584", "meta" : { "definition" : { - "val" : "A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/frequency" ] + "val" : "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" } ] }, - "type" : "CLASS", - "lbl" : "frequency" + "type" : "PROPERTY", + "lbl" : "has part structure that is capable of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002223", + "id" : "http://purl.obolibrary.org/obo/PATO_0001444", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having reacted with oxygen, or been modified by oxidation (the reaction in which the atoms of an element lose electrons and the valence of the element increases).", - "xrefs" : [ "Wikipedia:http://en.wiktionary.org/wiki/oxidized" ] + "val" : "A broken quality inhering in a bearer by virtue of the bearer's being broken open.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "ruptured", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "cracked", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "fragmented", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "split", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "hemorrhaged", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "fractured", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "burst", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "torn", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001820" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - 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"xrefs" : [ "Wikipedia:http://en.wiktionary.org/wiki/hyperphosphorylated" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "hyperphosphorylated", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002222" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-09T01:51:52Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased phosphorylation" + "lbl" : "obsolete absolute size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001374", + "id" : "http://purl.obolibrary.org/obo/PATO_0000117", "meta" : { "definition" : { - "val" : "A cellular quality inhering in a bearer by virtue of the bearer's number of homologous sets of chromosomes in the nucleus or primary chromosome-containing compartment of the cell, each set essentially coding for all the biological traits of the organism.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Ploidy" ] + "val" : "A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "ploidy" + "lbl" : "size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000046", + "id" : "http://purl.obolibrary.org/obo/RO_0002581", + "meta" : { + "definition" : { + "val" : "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL", + "xrefs" : [ ] + } + }, + "type" : "PROPERTY", + "lbl" : "is a defining property chain axiom" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001448", "meta" : { + "definition" : { + "val" : "A composition quality inhering in an bearer by virtue of the bearer's being hardened by the deposition of calcium into bone.", + "xrefs" : [ "MAMMALOGY:MAMMALOGY" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative frequency" + "lbl" : "ossified" }, { - "id" : "http://purl.obolibrary.org/obo/pato#mpath_slim", + "id" : "http://purl.obolibrary.org/obo/PATO_0001449", "meta" : { + "definition" : { + "val" : "A composition quality inhering in an bearer by virtue of the bearer's cartilage quantities.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Cartilaginous" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Pathology slim" + "val" : "Cartilage is a type of dense connective tissue. It is composed of specialized cells called chondrocytes (CL:0000138) that produce a large amount of extracellular matrix composed of collagen fibers, abundant ground substance rich in proteoglycan, and elastin fibers." } ] }, - "type" : "PROPERTY" + "type" : "CLASS", + "lbl" : "cartilaginous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001375", + "id" : "http://purl.obolibrary.org/obo/PATO_0000119", "meta" : { "definition" : { - "val" : "A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of homologous chromosomes.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Haploid" ] + "val" : "A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "haploid" + "lbl" : "height" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002222", + "id" : "http://purl.obolibrary.org/obo/RO_0002582", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully.", - "xrefs" : [ "Wikipedia:http://en.wiktionary.org/wiki/hypophosphorylated" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "hypophosporylated", + "val" : "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.", "xrefs" : [ ] - } ], + } + }, + "type" : "PROPERTY", + "lbl" : "is a defining property chain axiom where second argument is reflexive" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001442", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of whether the bearer includes all its components.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-09T01:54:22Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002221" } ] }, "type" : "CLASS", - "lbl" : "decreased phosphorylation" + "lbl" : "wholeness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000045", + "id" : "http://purl.obolibrary.org/obo/PATO_0000110", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -53976,867 +53939,833 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute frequency" + "lbl" : "obsolete drought sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000004", + "id" : "http://purl.obolibrary.org/obo/RO_0002577", "meta" : { "definition" : { - "val" : "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.", + "val" : "A material entity consisting of multiple components that are causally integrated.", "xrefs" : [ ] - } + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.jbiomedsem.com/content/4/1/43" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] }, "type" : "CLASS", - "lbl" : "independent continuant" + "lbl" : "system" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000059", + "id" : "http://purl.obolibrary.org/obo/PATO_0001443", "meta" : { - "definition" : { - "val" : "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a parent.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "parental type", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001444" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "obsolete parental quality" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002238", + "id" : "http://purl.obolibrary.org/obo/RO_0002578", "meta" : { "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved forward or upward.", - "xrefs" : [ "url:http://www.thefreedictionary.com/antrorse" ] + "val" : "Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly regulates (processual)" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-23T02:22:56Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" } ] }, - 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"id" : "http://purl.obolibrary.org/obo/PATO_0001389", + "id" : "http://purl.obolibrary.org/obo/PATO_0001441", "meta" : { "definition" : { - "val" : "An aneuploidy quality inhering in a bearer by virtue of the bearer's containing three, instead of two, chromosomes of a particular numbered type in an organism.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Trisomy" ] + "val" : "A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an nonidentical molecule in an adjacent cell.", + "xrefs" : [ "GO:GO" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "trisomy" + "lbl" : "heterophilic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002237", + "id" : "http://purl.obolibrary.org/obo/GO_0009966", "meta" : { "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or downward.", - "xrefs" : [ "url:http://www.thefreedictionary.com/retrorse" ] + "val" : "Any process that modulates the frequency, rate or extent of signal transduction.", + "xrefs" : [ "GOC:sm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "regulation of signalling pathway", + "xrefs" : [ "GOC:mah" ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "hasRelatedSynonym", + "val" : "regulation of signaling pathway", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0035466" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-23T02:22:09Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "retrorse" + "lbl" : "regulation of signal transduction" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001383", + "id" : "http://purl.obolibrary.org/obo/GO_0009967", "meta" : { "definition" : { - "val" : "A polyploidy quality inhering in a bearer by virtue of the bearer's containing five homologous sets of chromosomes.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Pentaploid" ] + "val" : "Any process that activates or increases the frequency, rate or extent of signal transduction.", + "xrefs" : [ "GOC:sm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "up regulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "positive regulation of signalling pathway", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "positive regulation of signaling pathway", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0035468" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "pentaploid" + "lbl" : "positive regulation of signal transduction" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002230", + "id" : "http://purl.obolibrary.org/obo/GO_0009968", "meta" : { "definition" : { - "val" : "A triangular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, triangular.", - "xrefs" : [ "url:http://www.thefreedictionary.com/Subtriangular" ] + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction.", + "xrefs" : [ "GOC:sm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "down-regulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "negative regulation of signalling pathway", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "negative regulation of signaling pathway", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of signal transduction", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-19T12:20:59Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0035467" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "subtriangular" + "lbl" : "negative regulation of signal transduction" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000051", + "id" : "http://purl.obolibrary.org/obo/IAO_0000228", "meta" : { - "definition" : { - "val" : "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use." } ] }, - "type" : "CLASS", - "lbl" : "morphology" + "type" : "INDIVIDUAL", + "lbl" : "term imported" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000050", + "id" : "http://purl.obolibrary.org/obo/IAO_0000229", "meta" : { - "definition" : { - "val" : "A time quality inhering in a bearer by virtue of the bearer's expected maximum age.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created." } ] }, - "type" : "CLASS", - "lbl" : "life span" + "type" : "INDIVIDUAL", + "lbl" : "term split" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002231", + "id" : "http://purl.obolibrary.org/obo/RO_0002575", "meta" : { "definition" : { - "val" : "A split shape quality inhering in a bearer by virtue of the bearer's having or being divided into many lobes or similar segments.", - "xrefs" : [ "url:http://www.thefreedictionary.com/multifid" ] + "val" : "relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The general property hierarchy is:\n\n \"directly P\" SubPropertyOf \"P\"\n Transitive(P)\n\nWhere we have an annotation assertion\n\n \"directly P\" \"is direct form of\" \"P\"" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-19T12:23:02Z" + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.org/dc/terms/creator", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002423", + "val" : "If we have the annotation P is-direct-form-of Q, and we have inverses P' and Q', then it follows that P' is-direct-form-of Q'" } ] }, - "type" : "CLASS", - "lbl" : "multifid" + "type" : "PROPERTY", + "lbl" : "is direct form of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001384", + "id" : "http://purl.obolibrary.org/obo/RO_0040042", "meta" : { "definition" : { - "val" : "A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Hexaploid" ] + "val" : "R is homemorphic for C iff (1) there exists some x,y such that x R y, and x and y instantiate C and (2) for all x, if x is an instance of C, and there exists some y some such that x R y, then it follows that y is an instance of C.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "part-of is homeomorphic for independent continuants." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/issues/164" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-10-21T19:46:34Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "R homeomorphic-for C expands to: C SubClassOf R only C. Additionally, for any class D that is disjoint with C, we can also expand to C DisjointWith R some D, D DisjointWith R some C." } ] }, - "type" : "CLASS", - "lbl" : "hexaploid" + "type" : "PROPERTY", + "lbl" : "is homeomorphic for" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001381", + "id" : "http://purl.obolibrary.org/obo/RO_0002566", "meta" : { "definition" : { - "val" : "A polyploidy quality inhering in a bearer by virtue of the bearer's containing three homologous sets of chromosomes.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Triploid" ] + "val" : "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influences (material entity to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "triploid" + "type" : "PROPERTY", + "lbl" : "causally influences" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000053", + "id" : "http://purl.obolibrary.org/obo/IAO_0000231", "meta" : { + "definition" : { + "val" : "Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Melanie Courtot" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has obsolescence reason" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000070" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" } ] }, - "type" : "CLASS" + "type" : "PROPERTY", + "lbl" : "has obsolescence reason" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000052", + "id" : "http://purl.obolibrary.org/obo/IAO_0000232", "meta" : { "definition" : { - "val" : "A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "relational shape quality", + "val" : "An administrative note of use for a curator but of no use for a user", "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "IAO:0000232" } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "curator_notes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001647" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "curator note" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects." + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" } ] }, - "type" : "CLASS", - "lbl" : "shape" + "type" : "PROPERTY", + "lbl" : "curator notes" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001382", + "id" : "http://purl.obolibrary.org/obo/RO_0002563", "meta" : { - "definition" : { - "val" : "A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Tetraploid" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "tetraploid" + "type" : "PROPERTY", + "lbl" : "interaction relation helper property" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002234", + "id" : "http://purl.obolibrary.org/obo/RO_0002564", "meta" : { - "definition" : { - "val" : "A notched shape quality inhering in a bearer by virtue of the bearer's having a notched tip or edge.", - "xrefs" : [ "url:http://www.thefreedictionary.com/emarginate" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-19T04:25:58Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecular interaction relation helper property" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002559", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influenced by (material entity to material entity)" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, - "type" : "CLASS", - "lbl" : "emarginate" + "type" : "PROPERTY", + "lbl" : "causally influenced by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001387", + "id" : "http://purl.obolibrary.org/obo/PATO_0001408", "meta" : { "definition" : { - "val" : "An aneuploidy quality inhering in a bearer by virtue of the bearer's containing only two chromosome from a pair in a cell's nucleus.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Disomy" ] + "val" : "A cellular quality inhering in a bearer by virtue of the bearer's having thin, tail-like projections extending outwards from the cell body.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Ciliated" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "For diploid organisms, such as humans, it is the normal condition, whilst for organisms that are normally triploid or above, disomy is an aneuploidy." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "disomy" + "lbl" : "ciliatedness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000055", + "id" : "http://purl.obolibrary.org/obo/PATO_0001409", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's resembling a long tapered rod.", + "xrefs" : [ "Biology-online:Biology-online" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - 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"xrefs" : [ "url:http://www.thefreedictionary.com/trilobed" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-28T12:57:46Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "trilobed" + "lbl" : "obsolete absolute opacity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001394", + "id" : "http://purl.obolibrary.org/obo/PATO_0000965", "meta" : { "definition" : { - "val" : "A ploidy quality inhering in a bearer by virtue of the bearer's having two copies (homologs) of each chromosome, usually one from the mother and one from the father.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Diploid" ] + "val" : "A pattern quality of inhering in a bearer by virtue of the correspondence in size, shape, and relative position of the bearer's parts on opposite sides of a dividing line or median plane or about a center or axis.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "The exact number may be one or two different from the 2n number and still be classified as diploidy (although with aneuploidy). Nearly all mammals are diploid organisms, although all individuals have some small fracton of cells that are polyploidy." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "diploid" + "lbl" : "symmetry" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000061", + "id" : "http://purl.obolibrary.org/obo/PATO_0000964", "meta" : { + "definition" : { + "val" : "A optical quality inhering in a bearer by virtue of the bearer's lacking opacity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "clear", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "hyaline", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000963" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative pattern" + "lbl" : "transparent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002242", + "id" : "http://purl.obolibrary.org/obo/PATO_0000967", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's rate of change of the position.", - "xrefs" : [ "url:http://en.wikipedia.org/wiki/Velocity" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a sinuate margin and rippled surface.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "wavy", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "waved", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "rippled", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "undulated", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "undulating", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "sinuate", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-28T02:52:48Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001939" } ] }, "type" : "CLASS", - "lbl" : "velocity" + "lbl" : "undulate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001395", + "id" : "http://purl.obolibrary.org/obo/PATO_0000966", "meta" : { - "definition" : { - "val" : "A diploidy quality inhering in a bearer in by virtue of belonging in a species whose one of the sexes has haploid cells and the other has diploid cells.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Haplodiploid" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "haplodiploid" + "lbl" : "obsolete symmetry value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000064", + "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", + "type" : "PROPERTY", + "lbl" : "in_subset" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000979", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -54847,304 +54776,277 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute percentage" + "lbl" : "obsolete porosity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001392", + "id" : "http://purl.obolibrary.org/obo/PATO_0000972", "meta" : { - "definition" : { - "val" : "A polyploidy quality inhering in a bearer by virtue of the bearer's chromosome number being increased by endomitosis and for which the degree of ploidy is proportional to the number of times that endomitosis has taken place.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Endopolyploid" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "endopolyploid" + "lbl" : "obsolete relative permeability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000063", + "id" : "http://purl.obolibrary.org/obo/PATO_0000971", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete percentage" + "lbl" : "obsolete absolute permeability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002240", + "id" : "http://purl.obolibrary.org/obo/PATO_0000974", "meta" : { - "definition" : { - "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop.", - "xrefs" : [ "url:wordnetweb.princeton.edu/perl/webwn" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "drop shaped", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-23T02:31:11Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "teardrop-shaped" + "lbl" : "obsolete relative porosity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001393", + "id" : "http://purl.obolibrary.org/obo/PATO_0000973", "meta" : { "definition" : { - "val" : "A ploidy quality inhering in a bearer by virtue of the bearer's containing an integral multiple of the monoploid number, possibly excluding the sex-determining chromosomes.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Euploid" ] + "val" : "A permeability quality inhering in a bearer by virtue of the bearer's disposition to admit the passage of gas or liquid through pores or interstices.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "euploid" + "lbl" : "porosity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000066", + "id" : "http://purl.obolibrary.org/obo/PATO_0000976", "meta" : { - "definition" : { - "val" : "A texture quality inhering in a bearer by virtue of the bearer's having hair or bristles.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "pilosity" + "lbl" : "obsolete permeability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002245", + "id" : "http://purl.obolibrary.org/obo/PATO_0000975", "meta" : { - "definition" : { - "val" : "A force which relative high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "increased force amplitude", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-08-04T11:12:20Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002246" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased force" + "lbl" : "obsolete absolute porosity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001398", + "id" : "http://purl.obolibrary.org/obo/PATO_0000978", "meta" : { - "definition" : { - "val" : "A cellular quality inhering in a bearer by virtue of the bearer's having the ability to go through numerous cycles of cell division while maintaining the undifferentiated state.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "self-renewal" + "lbl" : "obsolete relative permeability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000065", + "id" : "http://purl.obolibrary.org/obo/PATO_0000977", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative percentage" + "lbl" : "obsolete absolute permeability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001399", + "id" : "http://purl.obolibrary.org/obo/PATO_0000970", "meta" : { "definition" : { - "val" : "A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers and extraembryonic cell types.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Totipotent" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion).", + "xrefs" : [ "Biology-online:Biology-online" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "totipotent" + "lbl" : "permeability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002246", + "id" : "http://purl.obolibrary.org/obo/GO_0033674", "meta" : { "definition" : { - "val" : "A force which is relative low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.", + "xrefs" : [ "GOC:mah" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "decreased force amplitude", + "val" : "upregulation of kinase activity", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-08-04T11:13:13Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "hasNarrowSynonym", + "val" : "kinase activator", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "hasNarrowSynonym", + "val" : "stimulation of kinase activity", + "xrefs" : [ ] }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002245" + "pred" : "hasExactSynonym", + "val" : "up-regulation of kinase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of kinase activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "decreased force" + "lbl" : "positive regulation of kinase activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002243", + "id" : "http://purl.obolibrary.org/obo/GO_0033673", "meta" : { "definition" : { - "val" : "A physical quality inhering in a fluid (liquid or gas) by virtue of the amount of fluid which passes through a given surface per unit time.", - "xrefs" : [ "url:http://en.wikipedia.org/wiki/Volumetric_flow_rate" ] + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.", + "xrefs" : [ "GOC:mah" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "volumetric flow rate", + "val" : "down regulation of kinase activity", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "volume flow rate", + "val" : "downregulation of kinase activity", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-28T03:00:20Z" + "pred" : "hasExactSynonym", + "val" : "down-regulation of kinase activity", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "fluid flow rate" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000068", - "meta" : { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of kinase activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "kinase inhibitor", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "TODO: define this or obsolete it and move children somewhere else." + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "qualitative" + "lbl" : "negative regulation of kinase activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001396", + "id" : "http://purl.obolibrary.org/obo/PATO_0000983", "meta" : { "definition" : { - "val" : "A monadic quality of continuant that exists at the cellular level of organisation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion).", + "xrefs" : [ "Biology-online:Biology-online" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000982" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cellular quality" + "lbl" : "impermeable" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002244", + "id" : "http://purl.obolibrary.org/obo/PATO_0000982", "meta" : { "definition" : { - "val" : "A flow rate quality inhering in a substance by virtue of the mass of substance which passes through a given surface per unit time.", - "xrefs" : [ "url:http://en.wikipedia.org/wiki/Mass_flow_rate" ] + "val" : "A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion).", + "xrefs" : [ "Biology-online:Biology-online" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "porous", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-28T03:02:03Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000983" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "mass flow rate" + "lbl" : "permeable" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001397", + "id" : "http://purl.obolibrary.org/obo/PATO_0000985", "meta" : { "definition" : { - "val" : "A cellular quality that arises by virtue of whether the bearer's disposition to differentiate into one or more mature cell types.", + "val" : "A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000984" } ] }, "type" : "CLASS", - "lbl" : "cellular potency" + "lbl" : "non-porous" }, { - "id" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", + "id" : "http://purl.obolibrary.org/obo/PATO_0000984", "meta" : { "definition" : { - "val" : "q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000985" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'." } ] }, - "type" : "PROPERTY", - "lbl" : "increased_in_magnitude_relative_to" + "type" : "CLASS", + "lbl" : "porous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000067", + "id" : "http://purl.obolibrary.org/obo/PATO_0000987", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -55155,158 +55057,101 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative pilosity" + "lbl" : "obsolete relative consistency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001390", + "id" : "http://purl.obolibrary.org/obo/PATO_0000986", "meta" : { - "definition" : { - "val" : "A trisomy quality inhering in a bearer when part of the bearer's extra chromosome is attached to one of the other chromosomes, or if one of the bearer's chromosomes has two copies of part of its chromosome.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Partial_trisomy" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "partial trisomy" + "lbl" : "obsolete absolute consistency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001391", + "id" : "http://purl.obolibrary.org/obo/PATO_0000989", "meta" : { - "definition" : { - "val" : "A trisomy quality inhering in a bearer by virtue of the bearer's having extra chromosomal material in only some of it's cells.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "mosaic trisomy" + "lbl" : "obsolete absolute consistency value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000060", + "id" : "http://purl.obolibrary.org/obo/PATO_0000988", "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "distribution", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "pattern", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001565" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000132" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "spatial pattern" + "lbl" : "obsolete relative consistency value" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002180", + "id" : "http://purl.obolibrary.org/obo/RO_0002506", "meta" : { - "definition" : { - "val" : "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://ontologydesignpatterns.org/wiki/Submissions:Componency" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, "type" : "PROPERTY", - "lbl" : "has component" + "lbl" : "causal relation between material entities" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002258", + "id" : "http://purl.obolibrary.org/obo/RO_0002500", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a point.", - "xrefs" : [ "PATOC:http://www.merriam-webster.com/dictionary/pointed" ] + "val" : "A relationship between a material entity and a process where the material entity has some causal role that influences the process", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-09-08T03:15:16Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, - "type" : "CLASS", - "lbl" : "pointed" + "type" : "PROPERTY", + "lbl" : "causal agent in process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002259", + "id" : "http://purl.obolibrary.org/obo/RO_0002501", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located near in space in relation to another entity.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "close to", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "approaches", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "vicinity of", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "near to", + "val" : "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q.", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-09-08T03:20:06Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001771" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, - "type" : "CLASS", - "lbl" : "adjacent to" + "type" : "PROPERTY", + "lbl" : "causal relation between processes" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000073", + "id" : "http://purl.obolibrary.org/obo/PATO_0000981", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -55317,105 +55162,120 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative_quality" + "lbl" : "obsolete relative porosity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002252", + "id" : "http://purl.obolibrary.org/obo/PATO_0000980", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being flattened along the antero-posterior axis.", - "xrefs" : [ "PATOC:JC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "antero-posteriorly compressed", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-08-16T03:57:42Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "antero-posteriorly flattened" + "lbl" : "obsolete absolute porosity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002253", + "id" : "http://purl.obolibrary.org/obo/RO_0002502", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/BFO_0000169" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "depends on" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002507", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being roundish, flattish shape, possibly with a slightly angled edge.", - "xrefs" : [ "PATOC:CVC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "plate-like", + "val" : "s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.org/dc/terms/creator", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-08-16T03:57:48Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "Pier Buttigieg" + }, { + "pred" : "http://purl.org/dc/terms/creator", + "val" : "Pier Buttigieg" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "determined by (system to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/24330602" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A coral reef environment is determined by a particular coral reef" } ] }, - "type" : "CLASS", - "lbl" : "platelike" + "type" : "PROPERTY", + "lbl" : "determined by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000072", + "id" : "http://purl.obolibrary.org/obo/RO_0002508", "meta" : { + "definition" : { + "val" : "inverse of determined by", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000001" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "determines (material entity to system)" } ] }, - "type" : "CLASS" + "type" : "PROPERTY", + "lbl" : "determines" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002250", + "id" : "http://purl.obolibrary.org/obo/RO_0002509", "meta" : { "definition" : { - "val" : "A degree of pigmentation quality that is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "hyperpigmented", + "val" : "s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "determined by part of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000994", + "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-08-09T04:17:19Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002251" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "increased pigmentation" + "lbl" : "obsolete absolute viscosity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000075", + "id" : "http://purl.obolibrary.org/obo/PATO_0000993", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -55426,9 +55286,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete threshability" + "lbl" : "obsolete relative viscosity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000074", + "id" : "http://purl.obolibrary.org/obo/PATO_0000996", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -55439,92 +55299,93 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete shattering" + "lbl" : "obsolete absolute viscosity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002251", + "id" : "http://purl.obolibrary.org/obo/PATO_0000995", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete viscosity value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000998", "meta" : { "definition" : { - "val" : "A degree of pigmentation quality that is relative low.", + "val" : "A viscosity quality inhering in a bearer by virtue of the bearer's having viscosity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "hypopigmented", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "viscous" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000997", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002250" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - 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The allowed values come from an enumerated list of predefined terms. 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When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code \"no data\" (ND), is used to indicate this." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0008372" + } ] + }, + "type" : "CLASS", + "lbl" : "cellular_component" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000084", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative rhythym" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000083", + "meta" : { + "definition" : { + "val" : "A quality that exists by virtue of being a particular point in the time of a cycle.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "phase" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000086", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000050", + "meta" : { + "definition" : { + "val" : "a core relation that holds between a part and its whole", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "BFO:0000050" + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this day is part of this year (occurrent parthood)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000031" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000004" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000002" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000017" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000019" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my brain is part of my body (continuant parthood, two material entities)" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "is part of" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." + } ] + }, + "type" : "PROPERTY", + "lbl" : "part of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000085", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "sensitivity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "sensitivity toward" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000088", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute disease sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000087", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete disease sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000089", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative disease sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000051", + "meta" : { + "definition" : { + "val" : "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2.", + "xrefs" : [ "PATOC:CJM" ] + }, + "xrefs" : [ { + "val" : "BFO:0000051" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this year has part this day (occurrent parthood)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_cyclic", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_part" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my body has part my brain (continuant parthood, two material entities)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "chebi_ontology" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has part" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_part" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has part" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000080", + "meta" : { + "definition" : { + "val" : "A physical quality of a process inhering in a bearer by virtue of the size of the bearer's maximum displacement from the 'normal' position, when periodic motion is taking place.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "amplitude" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000082", + "meta" : { + "definition" : { + "val" : "A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm.", + "xrefs" : [ "reference.com:reference.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "persistence" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000081", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001309" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000095", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute drug sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000094", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete drug sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000097", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete herbicide sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_9443", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "primate", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "primates", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Primata", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Primates" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000096", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative drug sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000099", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete plant growth hormone sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000098", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete insecticide sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_01001110", + "meta" : { + "definition" : { + "val" : "An environmental system which includes both living and non-living components.", + "xrefs" : [ "https://en.wikipedia.org/wiki/Ecosystem" ] + } + }, + "type" : "CLASS", + "lbl" : "ecosystem" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000091", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete stress sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000040", + "meta" : { + "definition" : { + "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "material entity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000090", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000093", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete chemical sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000092", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete abiotic stress sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000066", + "meta" : { + "definition" : { + "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "BFO:0000066" + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "occurs in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "occurs_in" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "occurs_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds_in" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + } ] + }, + "type" : "PROPERTY", + "lbl" : "occurs in" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "meta" : { + "definition" : { + "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "BFO:0000067" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : 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Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "preceded_by" + } ] + }, + "type" : "PROPERTY", + "lbl" : "preceded_by" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000063", + "meta" : { + "definition" : { + "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. 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For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "generically dependent continuant" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000027", + "type" : "CLASS", + "lbl" : "object aggregate" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000029", + "type" : "CLASS", + "lbl" : "site" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000073", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative_quality" + }, { + "id" : 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(axiom label in BFO2 Reference: [050-003])", + "xrefs" : [ ] + } + }, + "type" : "CLASS", "lbl" : "specifically dependent continuant" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000070", - "meta" : { - "definition" : { - "val" : "The number of entities of this type that are part of the whole organism.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "presence", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "number", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "presence or absence in organism", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "quantitative", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "count in organism", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001169" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001226" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000071" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000053" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term was originally named \"presence\". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10." - } ] - }, - "type" : "CLASS", - "lbl" : "amount" - } ], - "edges" : [ { - "sub" : "http://purl.obolibrary.org/obo/PATO_0010002", + "id" : "http://purl.obolibrary.org/obo/PATO_0000070", + "meta" : { + "definition" : { + "val" : "The number of entities of this type that are part of the whole organism.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "presence", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "presence or absence in organism", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "number", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quantitative", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "count in organism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001226" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000071" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000053" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term was originally named \"presence\". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001169" + } ] + }, + "type" : "CLASS", + "lbl" : "amount" + } ], + "edges" : [ { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002005", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001280", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000954" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002025", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001053" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042995", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044464" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001414", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : 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"sub" : "http://purl.obolibrary.org/obo/PATO_0000632", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000440" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0045936", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0006796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002252", "pred" : "is_a", @@ -55905,34 +64275,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001521", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000080" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015003", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001629", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002178", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" - }, { - "sub" : 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"http://purl.obolibrary.org/obo/PATO_0001496", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001434" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045025", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001362" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001162", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001159" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001779", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001230" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002234", "pred" : "is_a", @@ -56001,10 +64311,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001382", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0040016", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000947", "pred" : "is_a", @@ -56017,10 +64323,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001969", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001466", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001862", "pred" : "is_a", @@ -56030,13 +64332,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000454" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001515", + "sub" : "http://purl.obolibrary.org/obo/CHEBI_59999", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000019" + "obj" : "http://purl.obolibrary.org/obo/CHEBI_24431" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0016020", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0110165" + "sub" : "http://purl.obolibrary.org/obo/RO_0002507", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002508" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001735", "pred" : "is_a", @@ -56045,18 +64347,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001779", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045065", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001815" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001955", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002006", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001323", "pred" : "is_a", @@ -56066,29 +64356,21 @@ "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015007", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0050794", + "sub" : "http://purl.obolibrary.org/obo/PCO_0000000", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0050789" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0045937", - "pred" : "http://purl.obolibrary.org/obo/RO_0002213", - "obj" : "http://purl.obolibrary.org/obo/GO_0006796" + "obj" : "http://purl.obolibrary.org/obo/PCO_0000031" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015016", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900120", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043393" + }, { + "sub" : "http://purl.obolibrary.org/obo/NCBITaxon_33213", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_6072" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0023057", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", @@ -56097,10 +64379,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0023056", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", "obj" : "http://purl.obolibrary.org/obo/GO_0023052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000409", "pred" : "is_a", @@ -56114,21 +64392,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0043229", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0043226" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000050", + "sub" : "http://purl.obolibrary.org/obo/PCO_0000029", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000165" + "obj" : "http://purl.obolibrary.org/obo/PCO_0000000" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000599", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000921" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", "pred" : "is_a", @@ -56150,9 +64420,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000622" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045087", + "sub" : "http://purl.obolibrary.org/obo/PCO_0000027", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045000" + "obj" : "http://purl.obolibrary.org/obo/PCO_0000018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045091", "pred" : "is_a", @@ -56165,18 +64435,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000327", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000016" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001394", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001393" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001473", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000470" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001890", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001396", "pred" : "is_a", @@ -56186,29 +64448,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0008152", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0008150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001769", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/CARO_0001010", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000040" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001457", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002062" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001404", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" + "sub" : "http://purl.obolibrary.org/obo/IAO_0000428", + "pred" : "type", + "obj" : "http://purl.obolibrary.org/obo/IAO_0000078" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000122", "pred" : "is_a", @@ -56225,14 +64467,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002170", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001786" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002090", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045000", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001383", "pred" : "is_a", @@ -56241,10 +64475,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001480", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045077", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002464", "pred" : "is_a", @@ -56261,10 +64491,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051100", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0044092" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001467", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051347", "pred" : "is_a", @@ -56274,17 +64500,9 @@ "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0051716" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002477", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001413", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002242" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002179", + "sub" : "http://purl.obolibrary.org/obo/PCO_0000001", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" + "obj" : "http://purl.obolibrary.org/obo/PCO_0000018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002189", "pred" : "is_a", @@ -56297,10 +64515,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001516", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001465", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000646" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002488", "pred" : "is_a", @@ -56309,58 +64523,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0048585", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0048519" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045070", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001392", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045083", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045072", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001620" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001926", - 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"http://purl.obolibrary.org/obo/RO_0002506", "pred" : "subPropertyOf", @@ -57457,50 +65099,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002188", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045068", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002360" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000051", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002003", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001340", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001894" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0023056", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0048518" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0007165", - "pred" : 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"http://purl.obolibrary.org/obo/PATO_0001611" + "sub" : "http://purl.obolibrary.org/obo/PCO_0000004", + "pred" : "http://purl.obolibrary.org/obo/RO_0000052", + "obj" : "http://purl.obolibrary.org/obo/PCO_0000002" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000467", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001723", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001720" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001517", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001516" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001624", - "pred" : "is_a", - "obj" : 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+65155,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001808", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000060", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002286", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002384" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001595", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001708" + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002384" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001592", "pred" : "is_a", @@ -57621,14 +65179,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001781", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000915" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002350", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002122", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002147", "pred" : "is_a", @@ -57642,9 +65192,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001803", + "sub" : "http://purl.obolibrary.org/obo/ENVO_01001002", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000927" + "obj" : "http://purl.obolibrary.org/obo/ENVO_01001000" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002428", "pred" : "subPropertyOf", @@ -57653,10 +65203,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002497", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002483", "pred" : "is_a", @@ -57665,14 +65211,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001962", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001902", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000454", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000066" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001892", "pred" : "is_a", @@ -57681,30 +65219,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000708", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000152" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015027", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001930", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001929" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000695", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002255", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002519", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000569", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000119" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000583", "pred" : "is_a", @@ -57713,6 +65235,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002265", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" + }, { + "sub" : "http://purl.obolibrary.org/obo/CHEBI_46662", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CHEBI_59999" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002185", "pred" : "is_a", @@ -57729,18 +65255,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001244", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000945", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001300", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001291" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001668", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001368", "pred" : "is_a", @@ -57749,10 +65267,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001499", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002027", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002269", "pred" : "is_a", @@ 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"http://purl.obolibrary.org/obo/ENVO_01000997", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + "obj" : "http://purl.obolibrary.org/obo/ENVO_01000254" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000694", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002325" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001615", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000998" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0060002", "pred" : "is_a", @@ -57821,14 +65311,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001518", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001516" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001625", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001510" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000964", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000957" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001627", "pred" : "is_a", @@ -57841,10 +65323,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001594", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001506", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001505" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001559", "pred" : "is_a", @@ -57865,22 +65343,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002271", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002013", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0055002", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001720" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001859", "pred" : "is_a", @@ -57889,10 +65351,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001858", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002076" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002025", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002211" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001973", "pred" : "is_a", 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- "obj" : "http://purl.obolibrary.org/obo/GO_0048583" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002124", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000944", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002366", "pred" : "is_a", @@ -58025,18 +65443,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000441", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002266", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002026", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001243", "pred" : "is_a", @@ -58045,14 +65455,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002228", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001500" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002596", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000719", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001931", "pred" : "is_a", @@ -58061,10 +65463,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000582", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002245" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015028", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002050", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", @@ -58081,10 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"http://purl.obolibrary.org/obo/PATO_0001424" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001690", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001579" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000057", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002323" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002467", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0019220", + "sub" : "http://purl.obolibrary.org/obo/NCBITaxon_117571", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0051174" + "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_117570" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", "pred" : "is_a", @@ -58181,18 +65531,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002166", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000694" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000297", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002206", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002218", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0016301", "pred" : "is_a", @@ -58205,26 +65543,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009893", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0019222" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0030007", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0030003" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002157", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001852" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000927", - "pred" : "is_a", - "obj" : 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"http://purl.obolibrary.org/obo/RO_0002014", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002335" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045019", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001389", "pred" : "is_a", @@ -58265,50 +65567,26 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0031325", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009893" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001375", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001393" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000613", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001871", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001233", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002400", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000141", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001409" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0042326", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0016310" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002418", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002427" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000600", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001418", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" + "sub" : "http://purl.obolibrary.org/obo/GO_0042326", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001372", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001294" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001487", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004047", "pred" : "subPropertyOf", @@ -58317,10 +65595,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002322", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002318" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001398", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002102" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001341", "pred" : "is_a", @@ -58333,18 +65607,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009892", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0019222" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001462", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001464" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0050789", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0065007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000948", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002509", "pred" : "is_a", @@ -58357,10 +65623,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001611", "pred" : "http://purl.obolibrary.org/obo/pato#towards", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002442", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002440" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001842", "pred" : "is_a", @@ -58369,10 +65631,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001960", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : 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"http://purl.obolibrary.org/obo/BFO_0000020", "pred" : "is_a", @@ -58573,46 +65727,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001507", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0051338", - "pred" : "http://purl.obolibrary.org/obo/RO_0002211", - "obj" : "http://purl.obolibrary.org/obo/GO_0016740" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004046", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002418" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001463", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001464" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001555", - "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000070" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001591", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : 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"http://purl.obolibrary.org/obo/PATO_0001796", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002028", + "sub" : "http://purl.obolibrary.org/obo/PATO_0000189", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002027" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0032091", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0005515" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001704", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001424" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000015", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002212", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001301" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001961", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001808", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001806" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001934", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002443", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048523", "pred" : "is_a", @@ -58733,66 +65811,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002358", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001242", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002469", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002419", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000647", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001911", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002076" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002299", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045032", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0005929", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", - "obj" : "http://purl.obolibrary.org/obo/GO_0030990" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0030005", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0030001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015010", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015009" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000381", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000044" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0010004", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0010002" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002109", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045083", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001023", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002349", "pred" : "is_a", @@ -58801,14 +65831,6 @@ "sub" : "http://purl.obolibrary.org/obo/pato#has_divisor_quality", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/pato#has_ratio_quality" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002263", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002264" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0005017", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000546", "pred" : "is_a", @@ -58817,10 +65839,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002301", "pred" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000411", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000947" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000394", "pred" : "is_a", @@ -58837,10 +65855,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001236", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001399", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002320", "pred" : "is_a", @@ -58861,22 +65875,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001277", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000953" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002131" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002342", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002227" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002405", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002412" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001989", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001591" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002595", "pred" : "subPropertyOf", @@ -58889,18 +65891,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000937", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002264" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001481", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002334", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0042326", "pred" : "is_a", @@ -58909,14 +65903,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002071", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001716", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001662" - 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"http://purl.obolibrary.org/obo/PATO_0001940", + "sub" : "http://purl.obolibrary.org/obo/PCO_0000031", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000040" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045027", "pred" : "is_a", @@ -60181,10 +66563,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001829", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001827" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001817", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001815" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001980", "pred" : "is_a", @@ -60198,29 +66576,17 @@ "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0016020" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001923", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001923", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002212", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005102", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005515" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0043227", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0043226" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", "pred" : "is_a", @@ -60229,14 +66595,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001206", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001976" - }, { - "sub" : 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"obj" : "http://purl.obolibrary.org/obo/RO_0002013" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002131", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002168" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001493", "pred" : "is_a", @@ -60309,18 +66639,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001385", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001374" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001505", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002409", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001580", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001690" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002414", "pred" : "is_a", @@ -60337,42 +66659,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001529", "pred" : 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+ "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002456", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002434", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/ENVO_02500027", + "pred" : "http://purl.obolibrary.org/obo/RO_0002218", + "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_9606" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002327", "pred" : "is_a", @@ -62473,26 +67715,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002064", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000386", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002427", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002501" - }, { - 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- }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001701", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045031", "pred" : "is_a", @@ -62613,10 +67787,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001846", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015014", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015013" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001947", "pred" : "is_a", @@ -62625,30 +67795,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040017", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001433" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001561", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001564" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001519", "pred" : "is_a", "obj" : 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"is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001999" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002422", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002213", "pred" : "inverseOf", @@ -62745,46 +67859,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002203", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002201" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0120025", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0042995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002314", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002212", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002335" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0043231", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0043229" - }, { - "sub" : 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"pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002389", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000631" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000570", "pred" : "is_a", @@ -62821,26 +67899,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002146", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002448", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002436" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002457", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000381", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000911" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002154", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001785" - }, { - 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"http://purl.obolibrary.org/obo/RO_0002328" + "obj" : "http://purl.obolibrary.org/obo/RO_0002329" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001548", "pred" : "is_a", @@ -62917,10 +67955,6 @@ "sub" : "http://purl.obolibrary.org/obo/CARO_0000006", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/BFO_0000040" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045012", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000769" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001194", "pred" : "is_a", @@ -62929,18 +67963,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001190", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000970", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0010003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0051716", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0009987" + "sub" : "http://purl.obolibrary.org/obo/RO_0000086", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000053" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000892", "pred" : "is_a", @@ -62953,10 +67983,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001683", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001685" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002304", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002411" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001267", "pred" : "is_a", @@ -62965,18 +67991,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000921", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001708" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { 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"http://purl.obolibrary.org/obo/PATO_0000918", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001426", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001710" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001928", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001188", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001758", "pred" : "is_a", @@ -63489,34 +68259,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001748", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001746", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001744" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002632", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000068" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002141", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001019" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001839", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002243" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001925", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001504", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001502" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001579", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001818", "pred" : "is_a", @@ -63529,34 +68275,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001807", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001664", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002318", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002145", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002120", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001574", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001613", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001615" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002309", "pred" : "is_a", @@ -63565,10 +68291,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001843", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001842" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001533", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000019" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001651", "pred" : "is_a", @@ -63577,14 +68299,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002134", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000056", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0051099", - "pred" : "http://purl.obolibrary.org/obo/RO_0002213", - "obj" : "http://purl.obolibrary.org/obo/GO_0005488" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001420", "pred" : "is_a", @@ -63593,10 +68307,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001783", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000049" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002344", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000454" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045051", "pred" : "is_a", @@ -63609,18 +68319,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001927", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002496", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001901", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001711" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002184", "pred" : "is_a", @@ -63637,26 +68335,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045030", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002202", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002258" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002518", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0030545", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0098772" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0050001", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002196", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002019", "pred" : "is_a", @@ -63665,22 +68347,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002059", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045088", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" }, { "sub" : "http://purl.obolibrary.org/obo/pato#has_dividend_quality", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/pato#has_ratio_quality" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0051174", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0031323" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002197", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002093", "pred" : "is_a", @@ -63693,14 +68363,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000617", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045048", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001806" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001262", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000322" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002350", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0031324", "pred" : "is_a", @@ -63725,10 +68395,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0005011", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1902531", "pred" : "is_a", @@ -63741,10 +68407,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001275", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000321" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005020", "pred" : "is_a", @@ -63761,10 +68423,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_1902531", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0035556" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000595", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000918" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001891", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", @@ -63773,10 +68431,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015026", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002630", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002382", "pred" : "is_a", @@ -63789,14 +68443,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040009", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002418", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002501" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0032091", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0043393" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005634", "pred" : "is_a", @@ -63805,38 +68451,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001482", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002284", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001689", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000586", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001439", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001579" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0005001", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048018", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002433", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002502", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001755", "pred" : "is_a", @@ -63845,18 +68471,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001199", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001525", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001520" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001717", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001674", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", "pred" : "is_a", @@ -63865,22 +68483,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002022", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002578" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001480", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000982" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001791", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001805", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002492", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002208", "pred" : "is_a", @@ -63909,58 +68515,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001171" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001575", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000047", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001421", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045075", - "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001357", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001667", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001435" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015010", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002235", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002214", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001979" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0010646", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0050794" - }, { - "sub" : 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"http://purl.obolibrary.org/obo/PATO_0001899", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001648" + "sub" : "http://purl.obolibrary.org/obo/RO_0002507", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001905", "pred" : "is_a", @@ -64001,10 +68555,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045079", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002399", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002387", "pred" : "is_a", @@ -64013,10 +68563,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002072", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001971", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" }, { 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"http://purl.obolibrary.org/obo/PATO_0002404", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001719" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001305", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001810", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002255" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002013", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001265", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1902533", "pred" : "is_a", @@ -64485,10 +68779,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001264", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045086", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000403", "pred" : "is_a", @@ -64497,10 +68787,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000321", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045085", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045084" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001566", "pred" : "is_a", @@ -64509,26 +68795,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000515", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001046" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002353", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098772", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0065009" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001185", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045022", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002243" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045046", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002136" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000499", "pred" : "is_a", @@ -64537,30 +68811,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000366", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" + }, { + "sub" : "http://purl.obolibrary.org/obo/IAO_0000423", + "pred" : "type", + "obj" : "http://purl.obolibrary.org/obo/IAO_0000078" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045075", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001615" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002393", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000505", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048585" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002381", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002500", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002275", "pred" : "is_a", @@ -64573,42 +68835,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002264" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0033673", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0051348" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0007154", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001558", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001564" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002490", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001687", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000772", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000773" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0005022", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002219", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045063", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002521", "pred" : "is_a", @@ -64617,10 +68851,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0030002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000646" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045073", - "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000952", "pred" : "is_a", @@ -64629,58 +68859,18 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0023056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0023051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001438", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001435" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001719", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002231", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001786" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002200", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002198" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002512", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002526", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002210", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001655" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001815", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001230" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002525", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015012", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001547" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001874", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002405", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001290", "pred" : "is_a", @@ -64689,18 +68879,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001753", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002534", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001535", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001533" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002123", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001432", "pred" : "is_a", @@ -64709,10 +68891,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002391", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001355", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002005" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001578", "pred" : "is_a", @@ -64734,21 +68912,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002191", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002190" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0048522", + "sub" : "http://purl.obolibrary.org/obo/UBERON_0001062", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0048518" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0044093", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0065009" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001741", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001740" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002473", "pred" : "subPropertyOf", @@ -64757,34 +68927,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001552", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0020002", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0020000" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000186", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001491", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001749" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0003824", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0003674" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002165", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + "sub" : "http://purl.obolibrary.org/obo/ENVO_00002297", + "pred" : "http://purl.obolibrary.org/obo/RO_0002508", + "obj" : "http://purl.obolibrary.org/obo/ENVO_01000254" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051174", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0006793" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002108", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000623" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045023", "pred" : "is_a", @@ -64793,34 +68947,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001285", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000915", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001708" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045037", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000618", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001272", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000320" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002036", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000297", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002052" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1902532", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", @@ -64830,45 +68960,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045090" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000407", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" + "sub" : "http://purl.obolibrary.org/obo/RO_0002295", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002324" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001730", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001729" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001586", - "pred" : "http://purl.obolibrary.org/obo/pato#towards", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002264", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001492", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0050001" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009966", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0023051" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009967", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0009966" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002203", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002286" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001196", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002480", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001448" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000365", "pred" : "is_a", @@ -64877,10 +68975,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000771", "pred" : "is_a", "obj" : 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"sub" : "http://purl.obolibrary.org/obo/GO_0048583", - "pred" : "http://purl.obolibrary.org/obo/RO_0002211", - "obj" : "http://purl.obolibrary.org/obo/GO_0050896" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001696", "pred" : "is_a", @@ -65465,14 +69283,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002094", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001563", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0051338", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0050790" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001303", "pred" : "is_a", @@ -65489,10 +69299,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001670", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000615", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0030000" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0031325", "pred" : "is_a", @@ -65501,10 +69307,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001683", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002047", "pred" : "is_a", @@ -65513,10 +69315,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000608", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000136" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009968", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0023057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001510", "pred" : "is_a", @@ -65529,22 +69327,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001790", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001740", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001739" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001822", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002290" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045090", "pred" : "is_a", @@ -65557,18 +69343,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002505", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001404" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001186", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045034", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002027" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000957", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005634", "pred" : "is_a", @@ -65577,46 +69351,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002520", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000586", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000117" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002298", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002224", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001977" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001328", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001325" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000646" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001437", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001435" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002630", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002578" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001889", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001976" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001194", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002155", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002261", "pred" : "is_a", @@ -65641,38 +69383,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002070", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001365", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001304", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001531", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001431" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000953", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0043229", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/GO_0005622" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002190", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001534", "pred" : "is_a", @@ -65685,46 +69403,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001697", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002156", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045093", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045090" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001322", + "sub" : "http://purl.obolibrary.org/obo/PCO_0000002", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" + "obj" : "http://purl.obolibrary.org/obo/PCO_0000029" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001577", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001852", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002181" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002035", + "sub" : "http://purl.obolibrary.org/obo/PCO_0000002", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + "obj" : "http://purl.obolibrary.org/obo/PCO_0000028" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001857", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002005" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000760", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001551", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001684", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001680", "pred" : "is_a", @@ -65733,26 +69435,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001801", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045003", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002331" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001286", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001339", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000627", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000619", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001511", "pred" : "is_a", @@ -65761,10 +69447,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000367", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009967", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0023056" } ], "id" : "http://purl.obolibrary.org/obo/pato/pato-full.json", "meta" : { @@ -65786,10 +69468,17 @@ "pred" : "http://www.geneontology.org/formats/oboInOwl#saved-by", "val" : "segerdel" } ], - "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29/pato-full.json" + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-31/pato-full.json" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010469", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0038023" + } ] + }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045041", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002326" ], "restrictions" : [ { @@ -65810,13 +69499,6 @@ "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", "fillerId" : "http://purl.obolibrary.org/obo/GO_0006796" } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001693", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000998" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002297", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001488" ], @@ -65839,2354 +69521,2516 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002221", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002220" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001587", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001586" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001587", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001586" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002002", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002083" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045076", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001586" ], + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043229", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0043226" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/BFO_0000050", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0005622" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045032", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000299" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002002", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002083" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001583", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001227" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", + "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/ENVO_01000952", + "genusIds" : [ "http://purl.obolibrary.org/obo/ENVO_02500027" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002233", + "fillerId" : "http://purl.obolibrary.org/obo/ENVO_01000951" + }, { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002234", + "fillerId" : "http://purl.obolibrary.org/obo/ENVO_01000313" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002298", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001488" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0015003", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0015002" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002245", 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"http://purl.obolibrary.org/obo/PATO_0010005" ], + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0045937", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0006796" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001553", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001459" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045088", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001457" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", + "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002328", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002326" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000599", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000921" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000761", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001707" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045054", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000122" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", + "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002056", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001362" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0015028", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0015026" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" @@ -68212,20 +72056,6 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023051", - "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", - "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001651", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001178" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045057", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001711" ], @@ -68247,20 +72077,6 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0098796", - "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0032991" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/BFO_0000050", - "fillerId" : "http://purl.obolibrary.org/obo/GO_0016020" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048583", - "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", - "fillerId" : "http://purl.obolibrary.org/obo/GO_0050896" - } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002028", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002027" ], @@ -68275,20 +72091,6 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045000", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000161" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045067", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000146" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002362", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002360" ], @@ -68303,13 +72105,6 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001713", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001711" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001671", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001566" ], @@ -68324,13 +72119,6 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001893", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001331" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000470", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000070" ], @@ -68345,13 +72133,6 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000387", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000048" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045077", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001956" ], @@ -68379,10 +72160,14 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002473", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0003001", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ] + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004", "http://purl.obolibrary.org/obo/CARO_0000000" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000", "http://purl.obolibrary.org/obo/CARO_0000003" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002595", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], @@ -68395,39 +72180,59 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002211", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0000056", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0000056", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] + "predicateId" : "http://purl.obolibrary.org/obo/RO_0003000", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002295", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000003" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0000053", "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000020" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0001018", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000050", "allValuesFromEdges" : [ { "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000031" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" } ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002506", @@ -68449,6 +72254,14 @@ "predicateId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002507", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/RO_0002577" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002509", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/RO_0002577" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/pato#has_divisor_entity", "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470" ] @@ -68468,6 +72281,9 @@ "predicateId" : "http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to", "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0000086", + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000019" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002384", "domainClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ], @@ -68480,12 +72296,16 @@ "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/pato#has_dividend_entity", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470" ] + "predicateId" : "http://purl.obolibrary.org/obo/RO_0001025", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002334", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/pato#has_dividend_entity", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002434", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], @@ -68502,14 +72322,14 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002215", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/pato#has_ratio_quality", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002018", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/pato#has_ratio_quality", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], @@ -68524,20 +72344,8 @@ "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] } ], "propertyChainAxioms" : [ { - "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000066", "http://purl.obolibrary.org/obo/BFO_0000050" ] - }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002566", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002411", "http://purl.obolibrary.org/obo/RO_0002233" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002430", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002212" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002255", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002203", "http://purl.obolibrary.org/obo/BFO_0000050" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002428", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002211" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000050" ] @@ -68547,42 +72355,24 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002449", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002630", "http://purl.obolibrary.org/obo/RO_0002333" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002429", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002213" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0004035", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002305" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002448", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002211", "http://purl.obolibrary.org/obo/RO_0002333" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002131" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0004034", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002304" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002216", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/BFO_0000050" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0004031", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002432", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000066" ] + "predicateId" : "http://purl.obolibrary.org/obo/RO_0001018", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0001025", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000062", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000062" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000063", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000063" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002131", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002596", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002211" ] @@ -68601,18 +72391,15 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002598", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002202", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002314", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0000052", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000050" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002327", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002202" ] + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002202" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002211", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002578", "http://purl.obolibrary.org/obo/RO_0002578" ] @@ -68622,15 +72409,66 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002329", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002215" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0000057" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002509", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002507", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002213", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002212", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000066", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002430", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002255", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002203", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002428", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002211" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002429", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004035", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002305" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002131" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004034", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002304" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004031", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002432", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000066" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002131", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002327", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002202" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0004032", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0004047" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002263", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002411" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0000057" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0004033", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0004046" ] @@ -68643,12 +72481,6 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002429", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/RO_0002213" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002213", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002212", "http://purl.obolibrary.org/obo/RO_0002212" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002584", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002215" ] diff --git a/pato-full.obo b/pato-full.obo index a6f4a420..55a168f2 100644 --- a/pato-full.obo +++ b/pato-full.obo @@ -1,41 +1,48 @@ format-version: 1.2 -data-version: pato/releases/2019-10-29/pato-full.owl +data-version: pato/releases/2019-10-31/pato-full.owl date: 07:02:2018 10:27 saved-by: segerdel auto-generated-by: OBO-Edit 2.3.1 +subsetdef: 3_STAR "Manually annotated by ChEBI Team" subsetdef: abnormal_slim "Abnormal/normal slim" subsetdef: absent_slim "Absent/present slim" subsetdef: attribute_slim "Attribute slim" subsetdef: cell_quality "cell_quality" subsetdef: disposition_slim "Disposition slim" -subsetdef: gocheck_do_not_annotate "" -subsetdef: gocheck_do_not_manually_annotate "" -subsetdef: goslim_agr "" -subsetdef: goslim_aspergillus "" -subsetdef: goslim_candida "" -subsetdef: goslim_chembl "" -subsetdef: goslim_flybase_ribbon "" -subsetdef: goslim_generic "" -subsetdef: goslim_metagenomics "" -subsetdef: goslim_mouse "" -subsetdef: goslim_pir "" -subsetdef: goslim_plant "" -subsetdef: goslim_pombe "" -subsetdef: goslim_yeast "" +subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation" +subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation" +subsetdef: goslim_agr "AGR slim" +subsetdef: goslim_aspergillus "Aspergillus GO slim" +subsetdef: goslim_candida "Candida GO slim" +subsetdef: goslim_chembl "ChEMBL protein targets summary" +subsetdef: goslim_flybase_ribbon "FlyBase Drosophila GO ribbon slim" +subsetdef: goslim_generic "Generic GO slim" +subsetdef: goslim_metagenomics "Metagenomics GO slim" +subsetdef: goslim_mouse "Mouse GO slim" +subsetdef: goslim_pir "PIR GO slim" +subsetdef: goslim_plant "Plant GO slim" +subsetdef: goslim_pombe "Fission yeast GO slim" +subsetdef: goslim_yeast "Yeast GO slim" subsetdef: hpo_slim "Human phenotype slim" subsetdef: mpath_slim "Pathology slim" subsetdef: relational_slim "Relational slim: types of quality that require an additional entity in order to exist" subsetdef: ro-eco "" subsetdef: RO:0002259 "" subsetdef: scalar_slim "Scalar slim" +subsetdef: upper_level "abstract upper-level terms not directly useful for analysis" subsetdef: value_slim "Value slim" default-namespace: quality ontology: pato/pato-full +[Term] +id: BFO:0000001 +name: entity + [Term] id: BFO:0000002 name: continuant def: "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts." [] +is_a: BFO:0000001 ! entity disjoint_from: BFO:0000003 ! occurrent relationship: part_of BFO:0000002 ! continuant @@ -43,22 +50,40 @@ relationship: part_of BFO:0000002 ! continuant id: BFO:0000003 name: occurrent def: "An entity that has temporal parts and that happens, unfolds or develops through time." [] +is_a: BFO:0000001 ! entity relationship: part_of BFO:0000003 ! occurrent [Term] id: BFO:0000004 name: independent continuant def: "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything." [] +def: "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/017-002"} is_a: BFO:0000002 ! continuant disjoint_from: BFO:0000020 ! specifically dependent continuant +disjoint_from: BFO:0000020 ! specifically dependent continuant +disjoint_from: BFO:0000031 ! generically dependent continuant relationship: part_of BFO:0000004 ! independent continuant +[Term] +id: BFO:0000006 +name: spatial region +is_a: BFO:0000141 ! immaterial entity + [Term] id: BFO:0000015 name: process def: "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t." [] +def: "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/083-003"} is_a: BFO:0000003 ! occurrent +[Term] +id: BFO:0000017 +name: realizable entity +def: "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances." [] +is_a: BFO:0000020 ! specifically dependent continuant +disjoint_from: BFO:0000019 ! quality +relationship: part_of BFO:0000017 ! realizable entity + [Term] id: BFO:0000019 name: quality @@ -69,14 +94,42 @@ relationship: part_of BFO:0000019 ! quality id: BFO:0000020 name: specifically dependent continuant def: "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same." [] +def: "b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])" [] +def: "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])" [] {http://purl.obolibrary.org/obo/IAO_0010000="http://purl.obolibrary.org/obo/bfo/axiom/050-003"} is_a: BFO:0000002 ! continuant +disjoint_from: BFO:0000031 ! generically dependent continuant relationship: part_of BFO:0000020 ! specifically dependent continuant +[Term] +id: BFO:0000027 +name: object aggregate +is_a: BFO:0000040 ! material entity + +[Term] +id: BFO:0000029 +name: site +is_a: BFO:0000141 ! immaterial entity + +[Term] +id: BFO:0000031 +name: generically dependent continuant +def: "A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time." [] +def: "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])" [] +is_a: BFO:0000002 ! continuant +relationship: part_of BFO:0000031 ! generically dependent continuant +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + [Term] id: BFO:0000040 name: material entity def: "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time." [] is_a: BFO:0000004 ! independent continuant +disjoint_from: BFO:0000141 ! immaterial entity + +[Term] +id: BFO:0000141 +name: immaterial entity +is_a: BFO:0000004 ! independent continuant [Term] id: CARO:0000000 @@ -86,6 +139,7 @@ property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl [Term] id: CARO:0000003 +name: anatomical structure name: connected anatomical structure is_a: CARO:0000006 ! material anatomical entity property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl @@ -100,26 +154,179 @@ property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl [Term] id: CARO:0000014 name: cell part -is_a: CARO:0000003 ! connected anatomical structure +is_a: CARO:0000003 ! anatomical structure property_value: IAO:0000412 http://purl.obolibrary.org/obo/caro.owl property_value: IAO:0000589 "cell part (CARO)" xsd:string [Term] id: CARO:0001010 name: organism or virus or viroid -is_a: BFO:0000040 ! material entity +def: "Material anatomical entity that is a member of an individual species or is a viral or viroid particle." [] +is_a: PCO:0000031 ! organismal entity +property_value: http://purl.obolibrary.org/obo/IAO_created_by "Melissa Haendel" xsd:string +property_value: http://purl.obolibrary.org/obo/IAO_creation_date "9/18/11" xsd:string +property_value: IAO:0000589 "organism or virus" xsd:string [Term] id: CARO:0030000 name: biological entity is_a: BFO:0000004 ! independent continuant +[Term] +id: CHEBI:24431 +name: chemical entity +namespace: chebi_ontology +def: "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances." [] +subset: 3_STAR +synonym: "chemical entity" EXACT [UniProt] + +[Term] +id: CHEBI:46662 +name: mineral +namespace: chebi_ontology +def: "In general, a mineral is a chemical substance that is normally crystalline formed and has been formed as a result of geological processes. The term also includes metamict substances (naturally occurring, formerly crystalline substances whose crystallinity has been destroyed by ionising radiation) and can include naturally occurring amorphous substances that have never been crystalline ('mineraloids') such as georgite and calciouranoite as well as substances formed by the action of geological processes on bigenic compounds ('biogenic minerals')." [] +subset: 3_STAR +synonym: "mineral" EXACT [ChEBI] +synonym: "Minerale" RELATED [ChEBI] +synonym: "minerales" RELATED [ChEBI] +synonym: "minerals" RELATED [ChEBI] +synonym: "mineraux" RELATED [ChEBI] +is_a: CHEBI:59999 ! chemical substance + +[Term] +id: CHEBI:59999 +name: chemical substance +namespace: chebi_ontology +def: "A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types." [] +subset: 3_STAR +synonym: "Chemische Substanz" RELATED [ChEBI] +is_a: CHEBI:24431 ! chemical entity + [Term] id: CL:0000000 name: cell -is_a: CARO:0000003 ! connected anatomical structure +is_a: CARO:0000003 ! anatomical structure property_value: IAO:0000412 http://purl.obolibrary.org/obo/cl.owl +[Term] +id: ENVO:00002297 +name: environmental feature +def: "A material entity which determines an environmental system." [DOI:10.1186/2041-1480-4-43, NM:nm, ORCID:0000-0002-4366-3088] +is_a: BFO:0000040 ! material entity +intersection_of: BFO:0000040 ! material entity +intersection_of: RO:0002508 ENVO:01000254 ! determines environmental system +relationship: RO:0002508 ENVO:01000254 ! determines environmental system + +[Term] +id: ENVO:00010483 +name: environmental material +def: "A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system." [DOI:10.1186/2041-1480-4-43, MA:ma, ORCID:0000-0002-4366-3088, URL:http\://ontology.buffalo.edu/smith/articles/niches.html] +synonym: "portion of environmental material" EXACT [] +is_a: BFO:0000040 ! material entity + +[Term] +id: ENVO:01000254 +name: environmental system +def: "A system which has the disposition to environ one or more material entities." [DOI:10.1186/2041-1480-4-43] +synonym: "environment" EXACT [] +is_a: RO:0002577 ! system + +[Term] +id: ENVO:01000313 +name: anthropogenic environment +def: "An anthropogenic environment is an environmental system which is the product of human activity." [] +is_a: ENVO:01000254 ! environmental system + +[Term] +id: ENVO:01000951 +name: natural environment +def: "An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition." [https://en.wikipedia.org/wiki/Anthropization, https://en.wikipedia.org/wiki/Natural_environment] +is_a: ENVO:01000254 ! environmental system + +[Term] +id: ENVO:01000952 +name: anthropisation +def: "A process during which a natural environmental system is altered by human action." [https://en.wikipedia.org/wiki/Anthropization] +synonym: "anthropization" EXACT [] +is_a: ENVO:02500027 ! anthropogenic environmental process +intersection_of: ENVO:02500027 ! anthropogenic environmental process +intersection_of: RO:0002233 ENVO:01000951 ! has input natural environment +intersection_of: RO:0002234 ENVO:01000313 ! has output anthropogenic environment +relationship: RO:0002233 ENVO:01000951 ! has input natural environment +relationship: RO:0002234 ENVO:01000313 ! has output anthropogenic environment + +[Term] +id: ENVO:01000997 +name: environmental system determined by a quality +def: "An environmental system which is determined by materials bearing roughly homogeneous qualities." [] +is_a: ENVO:01000254 ! environmental system + +[Term] +id: ENVO:01000998 +name: environmental system determined by a material +def: "An environmental system within which an environmental material strongly influences the system's composition and properties." [] +is_a: ENVO:01000254 ! environmental system +intersection_of: ENVO:01000254 ! environmental system +intersection_of: RO:0002507 ENVO:00010483 ! determined by environmental material +relationship: RO:0002507 ENVO:00010483 ! determined by environmental material + +[Term] +id: ENVO:01001000 +name: environmental system determined by an organism +def: "An environmental system which is determined by a living organism." [] +synonym: "host-associated environment" RELATED [] +is_a: ENVO:01001110 ! ecosystem +intersection_of: ENVO:01000254 ! environmental system +intersection_of: RO:0002507 NCBITaxon:131567 ! determined by cellular organisms +relationship: RO:0002507 NCBITaxon:131567 ! determined by cellular organisms + +[Term] +id: ENVO:01001002 +name: animal-associated environment +def: "An environmental system determined by an animal." [] +synonym: "animal environment" BROAD [] +synonym: "Metazoan-associated environment" EXACT [] +is_a: ENVO:01001000 ! environmental system determined by an organism +intersection_of: ENVO:01000254 ! environmental system +intersection_of: RO:0002507 NCBITaxon:33208 ! determined by Metazoa +relationship: RO:0002507 NCBITaxon:33208 ! determined by Metazoa + +[Term] +id: ENVO:01001055 +name: environment associated with an animal part or small animal +def: "An environmental system determined by part of a living or dead animal, or a whole small animal." [] +is_a: ENVO:01000254 ! environmental system +intersection_of: ENVO:01000254 ! environmental system +intersection_of: RO:0002507 CARO:0000006 ! determined by material anatomical entity +relationship: RO:0002507 CARO:0000006 ! determined by material anatomical entity + +[Term] +id: ENVO:01001057 +name: environment associated with a plant part or small plant +def: "An environmental system determined by part of a living or dead plant, or a whole small plant." [] +is_a: ENVO:01000254 ! environmental system + +[Term] +id: ENVO:01001110 +name: ecosystem +def: "An environmental system which includes both living and non-living components." [https://en.wikipedia.org/wiki/Ecosystem] +is_a: ENVO:01000254 ! environmental system + +[Term] +id: ENVO:02500000 +name: environmental system process +def: "A process in which includes the components of an environmental system as participants." [] +is_a: BFO:0000015 ! process + +[Term] +id: ENVO:02500027 +name: anthropogenic environmental process +def: "An environmental process which is driven by the action of humans." [] +is_a: ENVO:02500000 ! environmental system process +intersection_of: ENVO:02500000 ! environmental system process +intersection_of: RO:0002218 NCBITaxon:9606 ! has active participant Homo sapiens +relationship: RO:0002218 NCBITaxon:9606 ! has active participant Homo sapiens + [Term] id: GO:0003674 name: molecular_function @@ -391,6 +598,7 @@ alt_id: GO:0000004 alt_id: GO:0007582 alt_id: GO:0044699 def: "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." [GOC:pdt] +def: "Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end." [GOC:go_curators, GOC:isa_complete] comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code "no data" (ND), is used to indicate this. subset: goslim_aspergillus subset: goslim_candida @@ -549,6 +757,18 @@ is_a: GO:0008150 ! biological_process created_by: janelomax creation_date: 2012-12-11T16:56:55Z +[Term] +id: GO:0010469 +name: regulation of signaling receptor activity +namespace: biological_process +def: "Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity." [GOC:dph, GOC:tb] +synonym: "regulation of receptor activity" BROAD [] +is_a: GO:0009966 ! regulation of signal transduction +is_a: GO:0065009 ! regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: regulates GO:0038023 ! signaling receptor activity +relationship: regulates GO:0038023 ! signaling receptor activity + [Term] id: GO:0010562 name: positive regulation of phosphorus metabolic process @@ -617,7 +837,9 @@ subset: goslim_pir subset: goslim_plant subset: goslim_yeast xref: Wikipedia:Biological_membrane +is_a: GO:0044464 ! obsolete cell part is_a: GO:0110165 ! cellular anatomical entity +property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Term] id: GO:0016301 @@ -951,7 +1173,23 @@ creation_date: 2010-05-14T01:14:37Z [Term] id: GO:0038023 +name: signaling receptor activity +namespace: molecular_function alt_id: GO:0004872 +alt_id: GO:0019041 +def: "Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response." [GOC:bf, GOC:signaling] +subset: goslim_agr +subset: goslim_chembl +subset: goslim_flybase_ribbon +subset: goslim_metagenomics +subset: goslim_mouse +subset: goslim_pir +subset: goslim_plant +synonym: "receptor activity" BROAD [] +synonym: "receptor activity involved in signal transduction" EXACT [GOC:bf] +is_a: GO:0060089 ! molecular transducer activity +created_by: rfoulger +creation_date: 2011-08-01T02:45:27Z [Term] id: GO:0042325 @@ -1521,6 +1759,15 @@ subset: gocheck_do_not_manually_annotate is_a: GO:0009987 ! cellular process is_a: GO:0050896 ! response to stimulus +[Term] +id: GO:0060089 +name: molecular transducer activity +namespace: molecular_function +def: "A compound molecular function in which an effector function is controlled by one or more regulatory components." [GOC:dos, GOC:pdt] +subset: gocheck_do_not_manually_annotate +subset: goslim_pir +is_a: GO:0003674 ! molecular_function + [Term] id: GO:0065007 name: biological regulation @@ -1787,6 +2034,291 @@ relationship: positively_regulates GO:0035556 ! intracellular signal transductio created_by: bf creation_date: 2013-12-02T11:33:10Z +[Term] +id: GO:2000272 +name: negative regulation of signaling receptor activity +namespace: biological_process +def: "Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity." [GOC:obol] +synonym: "negative regulation of receptor activity" BROAD [] +is_a: GO:0010469 ! regulation of signaling receptor activity +is_a: GO:0044092 ! negative regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: negatively_regulates GO:0038023 ! signaling receptor activity +relationship: negatively_regulates GO:0038023 ! signaling receptor activity +created_by: rfoulger +creation_date: 2010-12-02T09:28:47Z + +[Term] +id: GO:2000273 +name: positive regulation of signaling receptor activity +namespace: biological_process +def: "Any process that activates or increases the frequency, rate or extent of signaling receptor activity." [GOC:obol] +is_a: GO:0010469 ! regulation of signaling receptor activity +is_a: GO:0044093 ! positive regulation of molecular function +intersection_of: GO:0008150 ! biological_process +intersection_of: positively_regulates GO:0038023 ! signaling receptor activity +relationship: positively_regulates GO:0038023 ! signaling receptor activity +created_by: rfoulger +creation_date: 2010-12-02T09:28:50Z + +[Term] +id: IAO:0000027 +name: data item +is_a: IAO:0000030 ! information content entity + +[Term] +id: IAO:0000030 +name: information content entity +is_a: BFO:0000031 ! generically dependent continuant + +[Term] +id: IAO:0000078 +name: curation status specification +def: "The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value." [] +is_a: IAO:0000102 ! data about an ontology part +property_value: editor_note "Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)" xsd:string +property_value: IAO:0000111 "curation status specification" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "PERSON:Bill Bug" xsd:string +property_value: IAO:0000119 GROUP:OBI: xsd:string +property_value: IAO:0000119 "OBI_0000266" xsd:string + +[Term] +id: IAO:0000102 +name: data about an ontology part +def: "data about an ontology part is a data item about a part of an ontology, for example a term" [] +is_a: IAO:0000027 ! data item +property_value: IAO:0000117 "Person:Alan Ruttenberg" xsd:string + +[Term] +id: IAO:0000225 +name: obsolescence reason specification +def: "The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value." [] +is_a: IAO:0000102 ! data about an ontology part +property_value: editor_note "The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology." xsd:string +property_value: IAO:0000111 "obsolescence reason specification" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string +property_value: IAO:0000117 "PERSON: Melanie Courtot" xsd:string + +[Term] +id: IAO:0000409 +name: denotator type +def: "A denotator type indicates how a term should be interpreted from an ontological perspective." [] +is_a: IAO:0000102 ! data about an ontology part +property_value: example_of_usage "The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are \"natural kinds\" and the latter arbitrary collections of entities." xsd:string +property_value: IAO:0000117 "Alan Ruttenberg" xsd:string +property_value: IAO:0000119 "Barry Smith, Werner Ceusters" xsd:string + +[Term] +id: NCBITaxon:1 +name: root +synonym: "all" RELATED synonym [] +is_a: BFO:0000040 ! material entity + +[Term] +id: NCBITaxon:117570 +name: Teleostomi +is_a: NCBITaxon:7776 ! Gnathostomata + +[Term] +id: NCBITaxon:117571 +name: Euteleostomi +synonym: "bony vertebrates" EXACT genbank_common_name [] +is_a: NCBITaxon:117570 ! Teleostomi + +[Term] +id: NCBITaxon:131567 +name: cellular organisms +synonym: "biota" RELATED synonym [] +is_a: NCBITaxon:1 ! root + +[Term] +id: NCBITaxon:1338369 +name: Dipnotetrapodomorpha +is_a: NCBITaxon:8287 ! Sarcopterygii + +[Term] +id: NCBITaxon:1437010 +name: Boreoeutheria +synonym: "Boreotheria" RELATED synonym [] +is_a: NCBITaxon:9347 ! Eutheria + +[Term] +id: NCBITaxon:207598 +name: Homininae +synonym: "Homo/Pan/Gorilla group" RELATED synonym [] +is_a: NCBITaxon:9604 ! Hominidae + +[Term] +id: NCBITaxon:2759 +name: Eukaryota +synonym: "Eucarya" RELATED synonym [] +synonym: "Eucaryotae" RELATED synonym [] +synonym: "eucaryotes" EXACT genbank_common_name [] +synonym: "Eukarya" RELATED synonym [] +synonym: "Eukaryotae" RELATED synonym [] +synonym: "eukaryotes" EXACT common_name [] +synonym: "eukaryotes" RELATED blast_name [] +is_a: NCBITaxon:131567 ! cellular organisms + +[Term] +id: NCBITaxon:314146 +name: Euarchontoglires +is_a: NCBITaxon:1437010 ! Boreoeutheria + +[Term] +id: NCBITaxon:314293 +name: Simiiformes +synonym: "Anthropoidea" RELATED synonym [] +is_a: NCBITaxon:376913 ! Haplorrhini + +[Term] +id: NCBITaxon:314295 +name: Hominoidea +synonym: "ape" EXACT common_name [] +synonym: "apes" EXACT genbank_common_name [] +is_a: NCBITaxon:9526 ! Catarrhini + +[Term] +id: NCBITaxon:32523 +name: Tetrapoda +synonym: "tetrapods" EXACT genbank_common_name [] +is_a: NCBITaxon:1338369 ! Dipnotetrapodomorpha + +[Term] +id: NCBITaxon:32524 +name: Amniota +synonym: "amniotes" EXACT genbank_common_name [] +is_a: NCBITaxon:32523 ! Tetrapoda + +[Term] +id: NCBITaxon:32525 +name: Theria +synonym: "Theria" EXACT scientific_name [] +is_a: NCBITaxon:40674 ! Mammalia + +[Term] +id: NCBITaxon:33154 +name: Opisthokonta +synonym: "Fungi/Metazoa group" RELATED synonym [] +synonym: "opisthokonts" RELATED synonym [] +is_a: NCBITaxon:2759 ! Eukaryota + +[Term] +id: NCBITaxon:33208 +name: Metazoa +synonym: "Animalia" RELATED synonym [] +synonym: "animals" RELATED blast_name [] +synonym: "metazoans" EXACT genbank_common_name [] +synonym: "multicellular animals" EXACT common_name [] +is_a: NCBITaxon:33154 ! Opisthokonta + +[Term] +id: NCBITaxon:33213 +name: Bilateria +is_a: NCBITaxon:6072 ! Eumetazoa + +[Term] +id: NCBITaxon:33511 +name: Deuterostomia +synonym: "deuterostomes" EXACT common_name [] +is_a: NCBITaxon:33213 ! Bilateria + +[Term] +id: NCBITaxon:376913 +name: Haplorrhini +is_a: NCBITaxon:9443 ! Primates + +[Term] +id: NCBITaxon:40674 +name: Mammalia +synonym: "mammals" EXACT genbank_common_name [] +synonym: "mammals" RELATED blast_name [] +is_a: NCBITaxon:32524 ! Amniota + +[Term] +id: NCBITaxon:6072 +name: Eumetazoa +is_a: NCBITaxon:33208 ! Metazoa + +[Term] +id: NCBITaxon:7711 +name: Chordata +synonym: "chordates" EXACT genbank_common_name [] +synonym: "chordates" RELATED blast_name [] +is_a: NCBITaxon:33511 ! Deuterostomia + +[Term] +id: NCBITaxon:7742 +name: Vertebrata +synonym: "Vertebrata" EXACT scientific_name [] +synonym: "vertebrates" EXACT genbank_common_name [] +synonym: "vertebrates" RELATED blast_name [] +is_a: NCBITaxon:89593 ! Craniata + +[Term] +id: NCBITaxon:7776 +name: Gnathostomata +synonym: "Gnathostomata" EXACT scientific_name [] +synonym: "jawed vertebrates" EXACT genbank_common_name [] +is_a: NCBITaxon:7742 ! Vertebrata + +[Term] +id: NCBITaxon:8287 +name: Sarcopterygii +is_a: NCBITaxon:117571 ! Euteleostomi + +[Term] +id: NCBITaxon:89593 +name: Craniata +synonym: "Craniata" EXACT scientific_name [] +is_a: NCBITaxon:7711 ! Chordata + +[Term] +id: NCBITaxon:9347 +name: Eutheria +synonym: "eutherian mammals" EXACT common_name [] +synonym: "placental mammals" EXACT common_name [] +synonym: "Placentalia" RELATED synonym [] +synonym: "placentals" EXACT genbank_common_name [] +synonym: "placentals" RELATED blast_name [] +is_a: NCBITaxon:32525 ! Theria + +[Term] +id: NCBITaxon:9443 +name: Primates +synonym: "Primata" RELATED synonym [] +synonym: "primate" EXACT equivalent_name [] +synonym: "primates" RELATED blast_name [] +is_a: NCBITaxon:314146 ! Euarchontoglires + +[Term] +id: NCBITaxon:9526 +name: Catarrhini +is_a: NCBITaxon:314293 ! Simiiformes + +[Term] +id: NCBITaxon:9604 +name: Hominidae +synonym: "great apes" EXACT genbank_common_name [] +synonym: "Pongidae" RELATED synonym [] +is_a: NCBITaxon:314295 ! Hominoidea + +[Term] +id: NCBITaxon:9605 +name: Homo +synonym: "humans" EXACT common_name [] +is_a: NCBITaxon:207598 ! Homininae + +[Term] +id: NCBITaxon:9606 +name: Homo sapiens +synonym: "human" EXACT genbank_common_name [] +synonym: "humans" RELATED [] +synonym: "man" EXACT common_name [] +is_a: NCBITaxon:9605 ! Homo + [Term] id: PATO:0000000 name: obsolete pato @@ -1797,6 +2329,7 @@ id: PATO:0000001 name: quality alt_id: PATO:0000072 def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" [PATOC:GVG] +synonym: "trait" EXACT [] is_a: BFO:0000020 ! specifically dependent continuant property_value: IAO:0000589 "quality (PATO)" xsd:string @@ -22022,8 +22555,8 @@ id: PATO:0040000 name: heterotaxic def: "An oriented quality inhering in a bearer by virtue of the bearer's being abnormally placed or arranged." [http://medical-dictionary.thefreedictionary.com/heterotaxic] is_a: PATO:0000625 ! inverted -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-05-21T22:44:38Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040001 @@ -22031,8 +22564,8 @@ name: ring-shaped def: "Shaped like a ring" [https://orcid.org/0000-0002-6601-2165] synonym: "annular" EXACT [] is_a: PATO:0000947 ! elliptic -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T03:56:53Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040002 @@ -22040,24 +22573,24 @@ name: originates from def: "A positional quality inhering in a bearer by virtue of some aspect of that bearer beginning from a position on another entity." [] subset: relational_slim is_a: PATO:0000140 ! position -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T04:10:53Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040003 name: pathogenicity def: "The ability of a pathogen to produce an infectious disease or disorder in an another organism." [https://orcid.org/0000-0001-8941-3984] is_a: PATO:0001995 ! organismal quality -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:24:52Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040004 name: plush def: "A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness." [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0003-4606-0597] is_a: PATO:0000150 ! texture -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:39:30Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040005 @@ -22065,40 +22598,40 @@ name: posteroventral orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally." [https://orcid.org/0000-0003-3162-7490] synonym: "posteroventrally oriented" EXACT [] is_a: PATO:0000133 ! orientation -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T22:54:16Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040006 name: crown like def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:09:59Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040007 name: shell shaped def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:12:47Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040008 name: fringed def: "A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/fringe] is_a: PATO:0002267 ! edge shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:15:10Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040009 name: bowl shaped def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0002008 ! concave 3-D shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:17:01Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040010 @@ -22106,8 +22639,8 @@ name: mobile relative to def: "Mobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] comment: For example, distinct anteroposterior mobility of palatine relative to mesethmoid. is_a: PATO:0000004 ! mobility -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:20:08Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040011 @@ -22115,8 +22648,8 @@ name: immobile relative to def: "Immobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] comment: For example: distinct anteroposterior immobility of palatine relative to mesethmoid. is_a: PATO:0000004 ! mobility -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:21:07Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040012 @@ -22124,8 +22657,8 @@ name: plug shaped def: "A shape that is in the form of a plug, being tube-like and expanded on one end." [https://orcid.org/0000-0003-3162-7490] synonym: "plug like" EXACT [] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:24:41Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040013 @@ -22133,8 +22666,8 @@ name: dorsomedial orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially." [https://orcid.org/0000-0003-3162-7490] synonym: "dorsomedially directed" EXACT [] is_a: PATO:0000133 ! orientation -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:27:57Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040014 @@ -22145,8 +22678,8 @@ synonym: "band-like" EXACT [] synonym: "strip like" EXACT [] synonym: "strip-like" EXACT [] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:31:51Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040015 @@ -22156,16 +22689,16 @@ synonym: "trough like" EXACT [] synonym: "trough-like" EXACT [] synonym: "trough-shaped" EXACT [] is_a: PATO:0002008 ! concave 3-D shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:35:51Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040016 name: pentagonal def: "A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/pentagonal] is_a: PATO:0002006 ! 2-D shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:39:48Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040017 @@ -22173,39 +22706,39 @@ name: dysplastic growth def: "A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal." [https://www.cancer.gov/publications/dictionaries/cancer-terms/def/dysplasia] synonym: "dysgenesis" NARROW [] is_a: PATO:0001433 ! growth quality of occurrent -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T19:01:51Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040019 name: fibrotic def: "Fibrosis is the formation of excess fibrous connective tissue in an organ or tissue in a reparative or reactive process." [https://en.wikipedia.org/wiki/Fibrosis] is_a: PATO:0000025 ! composition -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T23:16:17Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040020 name: spayed female def: "Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal." [] is_a: PATO:0000383 ! female -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-16T22:52:49Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040021 name: unpaired def: "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0000467 ! present -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040022 name: flared def: "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape." [] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:49:07Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040023 @@ -22214,8 +22747,8 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having synonym: "disto-medial orientation" EXACT [] synonym: "distomedial" EXACT [] is_a: PATO:0000133 ! orientation -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:54:33Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040024 @@ -22223,14 +22756,14 @@ name: bilaterally paired def: "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism." [https://orcid.org/0000-0003-3162-7490] synonym: "paired" BROAD [] is_a: PATO:0000467 ! present -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040025 name: lesioned def: "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present." [NCIT:C3824] is_a: PATO:0000141 ! structure -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040026 @@ -23452,77 +23985,231 @@ is_a: PATO:0060001 ! sex-specific created_by: http://orcid.org/0000-0002-1373-1705 creation_date: 2019-08-23T08:51:22Z -[Typedef] -id: BFO:0000062 -name: preceded by -def: "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] -subset: ro-eco -property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:preceded_by xsd:string -property_value: IAO:0000111 "preceded by" xsd:string -property_value: IAO:0000116 "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." xsd:string -property_value: IAO:0000118 "is preceded by" xsd:string -property_value: IAO:0000118 "preceded_by" xsd:string -domain: BFO:0000003 ! occurrent -range: BFO:0000003 ! occurrent -holds_over_chain: part_of BFO:0000062 -is_transitive: true -is_a: RO:0002086 ! ends after -inverse_of: BFO:0000063 ! precedes +[Term] +id: PCO:0000000 +name: collection of organisms +def: "A material entity that consists of two or more organisms, viruses, or viroids." [] +comment: May be of the same or different species. +is_a: BFO:0000027 ! object aggregate +is_a: PCO:0000031 ! organismal entity +intersection_of: has_member CARO:0001010 {all_only="true"} ! organism or virus or viroid +intersection_of: has_member CARO:0001010 {minCardinality="2"} ! organism or virus or viroid +relationship: has_member CARO:0001010 ! organism or virus or viroid +property_value: example_of_usage "Examples include: population, community, species (meaning the collection of organisms that makes up a species, not the taxonomic rank), and family." xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000118 "group of organism" xsd:string +property_value: IAO:0000118 "organism collection" xsd:string -[Typedef] -id: BFO:0000063 -name: precedes -def: "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] -subset: ro-eco -property_value: IAO:0000111 "precedes" xsd:string -domain: BFO:0000003 ! occurrent -range: BFO:0000003 ! occurrent -holds_over_chain: part_of BFO:0000063 -is_transitive: true -is_a: RO:0002222 ! temporally related to +[Term] +id: PCO:0000001 +name: population of organisms +def: "A collection of organisms, all of the same species, that live in the same place." [] +comment: It is sometimes difficult to define the physical boundaries of a population. In the case of sexually reproducing organisms, the individuals within a population have the potential to reproduce with one another during the course of their lifetimes. 'Community', as often used to describe a group of humans, is a type of population. \n\nClasses for population already exist in IDO ('organism population', IDO_0000509) and OBI ('population', OBI_0000181). The definitions should be standardized across OBO Foundry ontologies and only one term used. +is_a: PCO:0000018 ! single-species collection of organisms +property_value: example_of_usage "" xsd:string +property_value: example_of_usage "This a general term that can include every organism of a species living in an area or any subset of them. Subclasses can be more specific as needed." xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000119 ISBN:0878932739 xsd:string + +[Term] +id: PCO:0000002 +name: ecological community +def: "A community of at least two different species, living in a particular area. Must have at least two populations of different species as members." [] +comment: Ecological community is defined broadly here, but includes both ecological interactions (inherited from parent term community) and spatial co-existence. It may be used to describe every organisms living in an area, but is often used to refer only to organisms of a particular taxon or guild (e.g., the plant community, the insect community, the herbivore community). The word community, as it often used to describe a group of humans living together, is a type of single-species collection of organisms, not an ecological community. +is_a: ENVO:01001110 ! ecosystem +is_a: PCO:0000028 ! community +is_a: PCO:0000029 ! multi-species collection of organisms +property_value: editor_note "Not sure if the equivalancy axiom specifies that both populations are located in the same site." xsd:string +property_value: IAO:0000114 IAO:0000123 +property_value: IAO:0000118 "multispecies community" xsd:string +property_value: IAO:0000119 ISBN:0865423504 xsd:string + +[Term] +id: PCO:0000003 +name: quality of a population +def: "A quality that inheres in a biological population." [] +comment: Includes qualities like population size, population growth rate, carrying capacity, immigration rate, emigration rate, fecundity, and death rate. A population quality may depend on the qualities of individual organisms in the population, but cannot be measured or described for a single organism. This term may be replaced by a PATO term. +is_a: PATO:0002003 ! population quality +intersection_of: PATO:0002003 ! population quality +intersection_of: RO:0000052 PCO:0000001 ! inheres in population of organisms +relationship: RO:0000052 PCO:0000001 ! inheres in population of organisms +property_value: editor_note "See Chris's comments on population qualities at: http://code.google.com/p/popcomm-ontology/issues/detail?id=4. These may not belong under BFO:quality. May be better to call them population characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2." xsd:string +property_value: IAO:0000114 IAO:0000428 -[Typedef] -id: BFO:0000067 -name: contains process -def: "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" [] -comment: Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant -property_value: IAO:0000111 "site of" xsd:string -property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl +[Term] +id: PCO:0000004 +name: quality of an ecological community +def: "A quality that inheres in a community." [] +comment: Includes qualities like diversity, species richness, stability, resilience, community structure, number of trophic levels. A community quality may depend on the qualities of individual organism in the community, but cannot be measured or described for a single individual. +is_a: PATO:0002003 ! population quality +intersection_of: PATO:0002003 ! population quality +intersection_of: RO:0000052 PCO:0000002 ! inheres in ecological community +relationship: RO:0000052 PCO:0000002 ! inheres in ecological community +property_value: editor_note "These may not belong under BFO:quality. May be better to call them community characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2." xsd:string +property_value: IAO:0000114 IAO:0000428 -[Typedef] -id: RO:0000052 -name: inheres in -def: "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence" [] -property_value: IAO:0000111 "inheres in" xsd:string -property_value: IAO:0000112 "this fragility inheres in this vase" xsd:string -property_value: IAO:0000112 "this red color inheres in this apple" xsd:string -property_value: IAO:0000116 "A dependent inheres in its bearer at all times for which the dependent exists." xsd:string -property_value: IAO:0000118 "inheres_in" xsd:string -property_value: RO:0001900 RO:0001901 -is_a: RO:0002314 ! inheres in part of -inverse_of: RO:0000053 ! bearer of +[Term] +id: PCO:0000017 +name: species as a collection of organisms +def: "A collection of organisms that has as parts every organism of given species and no organisms of any other species." [] +comment: This term is neutral with respect to which organisms are included in a species. Membership will depend on the species concept and the taxonomic assertions used to define the species. These criteria must be specified by the user. +is_a: PCO:0000018 ! single-species collection of organisms +property_value: editor_note "At the moment there is no way to specify in an OWL axiom that the collection includes every individual of a species. This should be added, if possible." xsd:string +property_value: IAO:0000114 IAO:0000120 -[Typedef] -id: RO:0000053 -name: bearer of -def: "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence" [] -property_value: IAO:0000111 "bearer of" xsd:string -property_value: IAO:0000112 "this apple is bearer of this red color" xsd:string -property_value: IAO:0000112 "this vase is bearer of this fragility" xsd:string -property_value: IAO:0000116 "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." xsd:string -property_value: IAO:0000118 "bearer_of" xsd:string -property_value: IAO:0000118 "is bearer of" xsd:string -property_value: RO:0001900 RO:0001901 -range: BFO:0000020 ! specifically dependent continuant +[Term] +id: PCO:0000018 +name: single-species collection of organisms +def: "A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species." [] +is_a: PCO:0000000 ! collection of organisms +property_value: IAO:0000114 IAO:0000120 +property_value: IAO:0000118 "collection of organisms of the same species" xsd:string -[Typedef] -id: RO:0000056 -name: participates in -def: "a relation between a continuant and a process, in which the continuant is somehow involved in the process" [] +[Term] +id: PCO:0000027 +name: collection of humans +def: "A collection of organisms of the same species that has as members only humans." [] +is_a: PCO:0000018 ! single-species collection of organisms +intersection_of: PCO:0000018 ! single-species collection of organisms +intersection_of: has_member NCBITaxon:9606 {all_only="true"} ! Homo sapiens +intersection_of: has_member NCBITaxon:9606 {minCardinality="2"} ! Homo sapiens +relationship: has_member NCBITaxon:9606 ! Homo sapiens +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000118 "human community" xsd:string +property_value: IAO:0000118 "human population" xsd:string + +[Term] +id: PCO:0000028 +name: community +def: "A collection of organisms of the same species whose members are all either genealogically related to each other or have mated with each other." [] +comment: These relations can include shared values, occupying the same spatial regkion. A community be be a single species collection of organsisms (as in a human community, which is also a type of population) or a or multi-species collection of organisms (as in an ecological community). +is_a: PCO:0000000 ! collection of organisms +property_value: editor_note "Biological or social relations are covered by RO_0002437 (biotically interacts with), but that relations does provide an easy way to specify that two entities are interacting with each other (participating in the same interaction). Until that axiom is specified, the logical definition of this term is incomplete." xsd:string +property_value: IAO:0000114 IAO:0000123 + +[Term] +id: PCO:0000029 +name: multi-species collection of organisms +def: "A collection of organisms that consists of two or more organisms from at least two species." [] +is_a: PCO:0000000 ! collection of organisms +property_value: editor_note "Need to add axiom to specify that it has at a mimum members of two different species, but not sure how to specify that. Can't say \"('has member' only ('member of' min 2 'species as a collection of organisms'))\"." xsd:string +property_value: IAO:0000114 IAO:0000123 + +[Term] +id: PCO:0000031 +name: organismal entity +def: "A material entity that is one or more organisms, viruses or viroids." [] +is_a: BFO:0000040 ! material entity +union_of: CARO:0001010 ! organism or virus or viroid +union_of: PCO:0000000 ! collection of organisms +property_value: IAO:0000114 IAO:0000125 + +[Term] +id: PO:0000003 +name: whole plant +def: "A plant structure (PO:0005679) which is a whole organism." [] +synonym: "bush (narrow)" NARROW [] +synonym: "clonal colony (related)" RELATED [] +synonym: "colony (related)" RELATED [] +synonym: "frutex (narrow)" NARROW [] +synonym: "frutices (narrow)" NARROW [] +synonym: "gametophyte (narrow)" NARROW [] +synonym: "genet (broad)" BROAD [] +synonym: "herb (narrow)" NARROW [] +synonym: "liana (narrow)" NARROW [] +synonym: "planta entera (Spanish, exact)" EXACT [] +synonym: "prothalli (narrow)" NARROW [] +synonym: "prothallium (narrow)" NARROW [] +synonym: "prothallus (narrow)" NARROW [] +synonym: "ramet (broad)" BROAD [] +synonym: "seedling (narrow)" NARROW [] +synonym: "shrub (narrow)" NARROW [] +synonym: "sporophyte (narrow)" NARROW [] +synonym: "suffrutex (narrow)" NARROW [] +synonym: "suffrutices (narrow)" NARROW [] +synonym: "tree (narrow)" NARROW [] +synonym: "vine (narrow)" NARROW [] +synonym: "woody clump (narrow)" NARROW [] +synonym: "植物体全体 (Japanese, exact)" EXACT [] +is_a: PO:0009011 ! plant structure + +[Term] +id: PO:0009011 +name: plant structure +def: "An anatomical structure that is or was part of a plant, or was derived from a part of a plant." [] +synonym: "estructura vegetal (Spanish, exact)" EXACT [] +synonym: "植物 構造 (Japanese, exact)" EXACT [] +is_a: PO:0025131 ! plant anatomical entity + +[Term] +id: PO:0025131 +name: plant anatomical entity +def: "An anatomical entity that is or was part of a plant." [] +synonym: "entidad anatómica vegetal (Spanish, exact)" EXACT [] +synonym: "植物 解剖学（形態）的実体 (Japanese, exact)" EXACT [] +is_a: BFO:0000040 ! material entity + +[Term] +id: RO:0002577 +name: system +def: "A material entity consisting of multiple components that are causally integrated." [] +is_a: BFO:0000040 ! material entity +property_value: editor_note "May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.jbiomedsem.com/content/4/1/43 xsd:string + +[Term] +id: Subset +is_a: IAO:0000102 ! data about an ontology part + +[Term] +id: UBERON:0001062 +name: anatomical entity +namespace: uberon +def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [FMA:62955, http://orcid.org/0000-0001-9114-8737] +subset: upper_level +xref: AAO:0010841 +xref: AEO:0000000 +xref: BILA:0000000 +xref: BIRNLEX:6 +xref: CARO:0000000 +xref: EHDAA2:0002229 +xref: FBbt:10000000 +xref: FBbt_root:00000000 +xref: FMA:62955 +xref: HAO:0000000 +xref: http://linkedlifedata.com/resource/umls/id/C1515976 +xref: MA:0000001 +xref: NCIT:C12219 +xref: TAO:0100000 +xref: TGMA:0001822 +xref: UMLS:C1515976 {source="ncithesaurus:Anatomic_Structure_System_or_Substance"} +xref: WBbt:0000100 +xref: XAO:0000000 +xref: ZFA:0100000 +is_a: BFO:0000004 ! independent continuant + +[Typedef] +id: RO:0000052 +name: inheres in +def: "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence" [] +property_value: editor_note "A dependent inheres in its bearer at all times for which the dependent exists." xsd:string +property_value: example_of_usage "this fragility inheres in this vase" xsd:string +property_value: example_of_usage "this red color inheres in this apple" xsd:string +property_value: IAO:0000111 "inheres in" xsd:string +property_value: IAO:0000118 "inheres_in" xsd:string +property_value: RO:0001900 RO:0001901 +is_a: RO:0002314 ! inheres in part of +inverse_of: bearer_of ! bearer of + +[Typedef] +id: RO:0000056 +name: participates in +def: "a relation between a continuant and a process, in which the continuant is somehow involved in the process" [] +property_value: example_of_usage "this blood clot participates in this blood coagulation" xsd:string +property_value: example_of_usage "this input material (or this output material) participates in this process" xsd:string +property_value: example_of_usage "this investigator participates in this investigation" xsd:string property_value: IAO:0000111 "participates in" xsd:string -property_value: IAO:0000112 "this blood clot participates in this blood coagulation" xsd:string -property_value: IAO:0000112 "this input material (or this output material) participates in this process" xsd:string -property_value: IAO:0000112 "this investigator participates in this investigation" xsd:string property_value: IAO:0000118 "participates_in" xsd:string domain: BFO:0000002 ! continuant range: BFO:0000003 ! occurrent @@ -23532,17 +24219,43 @@ inverse_of: RO:0000057 ! has participant id: RO:0000057 name: has participant def: "a relation between a process and a continuant, in which the continuant is somehow involved in the process" [] -property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:has_participant xsd:string +property_value: dc-source http://www.obofoundry.org/ro/#OBO_REL:has_participant xsd:string +property_value: editor_note "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." xsd:string +property_value: example_of_usage "this blood coagulation has participant this blood clot" xsd:string +property_value: example_of_usage "this investigation has participant this investigator" xsd:string +property_value: example_of_usage "this process has participant this input material (or this output material)" xsd:string property_value: IAO:0000111 "has participant" xsd:string -property_value: IAO:0000112 "this blood coagulation has participant this blood clot" xsd:string -property_value: IAO:0000112 "this investigation has participant this investigator" xsd:string -property_value: IAO:0000112 "this process has participant this input material (or this output material)" xsd:string -property_value: IAO:0000116 "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." xsd:string property_value: IAO:0000118 "has_participant" xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000002 ! continuant holds_over_chain: has_part RO:0000057 +[Typedef] +id: RO:0000080 +name: quality of +def: "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence" [] +property_value: editor_note "A quality inheres in its bearer at all times for which the quality exists." xsd:string +property_value: example_of_usage "this red color is a quality of this apple" xsd:string +property_value: IAO:0000118 "is quality of" xsd:string +property_value: IAO:0000118 "quality_of" xsd:string +is_a: RO:0000052 ! inheres in +inverse_of: has_quality ! has quality + +[Typedef] +id: RO:0001018 +name: contained in +subset: ro-eco +property_value: editor_note "Containment is location not involving parthood, and arises only where some immaterial continuant is involved." xsd:string +property_value: editor_note "Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):" xsd:string +property_value: editor_note "Intended meaning:\ndomain: material entity\nrange: spatial region or site (immaterial continuant)\n " xsd:string +property_value: IAO:0000111 "contained in" xsd:string +property_value: IAO:0000118 "contained_in" xsd:string +property_value: RO:0001900 RO:0001901 +domain: BFO:0000040 ! material entity +range: BFO:0000004 ! independent continuant +holds_over_chain: located_in part_of +inverse_of: contains ! contains + [Typedef] id: RO:0002013 name: has regulatory component activity @@ -23586,14 +24299,14 @@ name: has component process def: "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] domain: BFO:0000015 ! process range: BFO:0000015 ! process -is_a: RO:0002180 ! has component +is_a: has_component ! has component created_by: dos creation_date: 2017-05-24T09:49:21Z [Typedef] id: RO:0002019 name: has ligand -def: "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function." [] +def: "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function." [GOC:dos] domain: GO:0004872 is_a: RO:0002233 ! has input created_by: dos @@ -23646,15 +24359,6 @@ property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string is_transitive: true is_a: RO:0002222 ! temporally related to -[Typedef] -id: RO:0002087 -name: immediately preceded by -comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) -property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string -property_value: IAO:0000118 "starts_at_end_of" xsd:string -is_a: BFO:0000062 ! preceded by -inverse_of: RO:0002090 ! immediately precedes - [Typedef] id: RO:0002090 name: immediately precedes @@ -23664,110 +24368,27 @@ property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string property_value: IAO:0000118 "ends_at_start_of" xsd:string property_value: IAO:0000118 "meets" xsd:string property_value: RO:0002575 BFO:0000063 -is_a: BFO:0000063 ! precedes - -[Typedef] -id: RO:0002131 -name: overlaps -def: "x overlaps y if and only if there exists some z such that x has part z and z part of y" [] -subset: ro-eco -property_value: IAO:0000114 IAO:0000125 -property_value: RO:0001900 RO:0001901 -holds_over_chain: has_part part_of {http://purl.obolibrary.org/obo/RO_0002582="true"} -holds_over_chain: has_part RO:0002131 -holds_over_chain: part_of part_of -is_a: RO:0002323 ! mereotopologically related to -transitive_over: part_of ! part_of -expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" [] - -[Typedef] -id: RO:0002180 -name: has component -def: "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] -subset: ro-eco -property_value: IAO:0000114 IAO:0000125 -property_value: IAO:0000116 "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." xsd:string -property_value: IAO:0000232 "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." xsd:string -property_value: RO:0001900 RO:0001901 -property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:Componency -is_a: has_part ! has part - -[Typedef] -id: RO:0002202 -name: develops from -def: "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y" [] -comment: This is the transitive form of the develops from relation -property_value: IAO:0000114 IAO:0000125 -property_value: IAO:0000117 "Chris Mungall" xsd:string -property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string -property_value: IAO:0000117 "Melissa Haendel" xsd:string -property_value: IAO:0000117 "Terry Meehan" xsd:string -domain: BFO:0000004 ! independent continuant -range: BFO:0000004 ! independent continuant -is_transitive: true -is_a: RO:0002258 ! developmentally preceded by -inverse_of: RO:0002203 ! develops into - -[Typedef] -id: RO:0002203 -name: develops into -def: "inverse of develops from" [] -subset: RO:0002259 -property_value: IAO:0000114 IAO:0000125 -property_value: IAO:0000117 "Chris Mungall" xsd:string -property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string -property_value: IAO:0000117 "Terry Meehan" xsd:string -is_transitive: true -is_a: RO:0002286 ! developmentally succeeded by -is_a: RO:0002387 ! has potential to develop into -is_a: RO:0002388 ! has potential to directly develop into - -[Typedef] -id: RO:0002215 -name: capable of -def: "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. " [] -subset: ro-eco -property_value: IAO:0000112 "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" xsd:string -property_value: IAO:0000112 "osteoclast SubClassOf 'capable of' some 'bone resorption'" xsd:string -property_value: IAO:0000117 "Chris Mungall" xsd:string -property_value: IAO:0000118 "has function realized in" xsd:string -property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20123131 -property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/21208450 -property_value: IAO:0000232 "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." xsd:string -domain: BFO:0000004 ! independent continuant -range: BFO:0000015 ! process -is_a: RO:0002216 ! capable of part of -expand_expression_to: "RO_0000053 some (RO_0000054 only ?Y)" [] - -[Typedef] -id: RO:0002216 -name: capable of part of -def: "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." [] -property_value: IAO:0000117 "Chris Mungall" xsd:string -property_value: IAO:0000118 "has function in" xsd:string -property_value: seeAlso "defining-property-chains-involving-reflexivity" -holds_over_chain: RO:0002215 part_of {http://purl.obolibrary.org/obo/RO_0002582="true"} -is_a: RO:0002328 ! functionally related to -is_a: RO:0002500 ! causal agent in process -expand_expression_to: "RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))" [] +is_a: precedes ! precedes [Typedef] id: RO:0002217 name: actively participates in def: "x actively participates in y if and only if x participates in y and x realizes some active role" [] +property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000118 "agent in" xsd:string is_a: RO:0000056 ! participates in -inverse_of: RO:0002218 ! obsolete has active participant +inverse_of: RO:0002218 ! has active participant [Typedef] id: RO:0002218 +name: has active participant name: obsolete has active participant def: "x has participant y if and only if x realizes some active role that inheres in y" [] subset: ro-eco -property_value: IAO:0000112 "'heart development' has active participant some Shh protein" xsd:string +property_value: editor_note "This may be obsoleted and replaced by the original 'has agent' relation" xsd:string +property_value: example_of_usage "'heart development' has active participant some Shh protein" xsd:string property_value: IAO:0000114 IAO:0000125 -property_value: IAO:0000116 "This may be obsoleted and replaced by the original 'has agent' relation" xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000118 "has agent" xsd:string is_a: RO:0000057 ! has participant @@ -23778,17 +24399,19 @@ id: RO:0002222 name: temporally related to comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. subset: ro-eco +property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." xsd:string +property_value: dc-source https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 xsd:anyURI property_value: http://purl.org/dc/terms/source https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 xsd:anyURI property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000119 https://en.wikipedia.org/wiki/Allen%27s_interval_algebra -property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent [Typedef] id: RO:0002233 name: has input +def: "p has direct input c iff c is a participant in p, c is present at the start of p, and the state of c is modified during p." [] def: "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p." [] subset: ro-eco property_value: IAO:0000114 IAO:0000125 @@ -23797,51 +24420,25 @@ property_value: IAO:0000118 "consumes" xsd:string domain: BFO:0000015 ! process range: BFO:0000040 ! material entity is_a: RO:0000057 ! has participant -inverse_of: RO:0002352 ! input of +inverse_of: input_of ! input of [Typedef] -id: RO:0002254 -name: has developmental contribution from -def: "x has developmental contribution from y iff x has some part z such that z develops from y" [] -property_value: IAO:0000112 "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" xsd:string -property_value: IAO:0000114 IAO:0000125 -property_value: IAO:0000117 "Chris Mungall" xsd:string -domain: CARO:0000000 ! anatomical entity -range: CARO:0000000 ! anatomical entity -holds_over_chain: has_part RO:0002202 -is_a: RO:0002258 ! developmentally preceded by -inverse_of: RO:0002255 ! developmentally contributes to - -[Typedef] -id: RO:0002255 -name: developmentally contributes to -def: "inverse of has developmental contribution from" [] -subset: RO:0002259 -property_value: IAO:0000114 IAO:0000125 -property_value: IAO:0000117 "Chris Mungall" xsd:string -holds_over_chain: RO:0002203 part_of -is_a: RO:0002286 ! developmentally succeeded by -is_a: RO:0002385 ! has potential to developmentally contribute to - -[Typedef] -id: RO:0002258 -name: developmentally preceded by -def: "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p" [] -comment: This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from +id: RO:0002234 +name: has output +def: "p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p." [] +subset: ro-eco property_value: IAO:0000114 IAO:0000125 -property_value: IAO:0000116 "false" xsd:boolean property_value: IAO:0000117 "Chris Mungall" xsd:string -property_value: IAO:0000232 "In general you should not use this relation to make assertions - use one of the more specific relations below this one" xsd:string -domain: BFO:0000002 ! continuant -range: BFO:0000002 ! continuant -is_a: RO:0002324 ! developmentally related to -inverse_of: RO:0002286 ! developmentally succeeded by +property_value: IAO:0000118 "produces" xsd:string +is_a: RO:0000057 ! has participant +inverse_of: output_of ! output of [Typedef] id: RO:0002263 name: acts upstream of def: "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes." [] -property_value: IAO:0000112 "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." xsd:string +def: "c involved in regulation of p if c enables 'p' and p' causally upstream of p" [] +property_value: example_of_usage "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." xsd:string property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of holds_over_chain: RO:0002327 RO:0002411 is_a: RO:0002264 ! acts upstream of or within @@ -23849,12 +24446,13 @@ is_a: RO:0002264 ! acts upstream of or within [Typedef] id: RO:0002264 name: acts upstream of or within +def: "c acts upstream of or within p if c is enables 'p' and p' causally upstream of or within p" [] def: "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process." [] synonym: "affects" RELATED [] -property_value: IAO:0000112 "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." xsd:string +property_value: example_of_usage "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." xsd:string property_value: seeAlso http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within holds_over_chain: RO:0002327 RO:0002418 -is_a: RO:0002500 ! causal agent in process +is_a: RO:0002500 ! causal agent in [Typedef] id: RO:0002286 @@ -23868,6 +24466,7 @@ is_a: RO:0002384 ! has developmental potential involving id: RO:0002304 name: causally upstream of, positive effect comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y +property_value: dc-creator "cjm" xsd:string property_value: http://purl.org/dc/terms/creator "cjm" xsd:string property_value: RO:0004049 RO:0002411 is_a: RO:0002411 ! causally upstream of @@ -23877,6 +24476,7 @@ is_a: RO:0004047 ! causally upstream of or within, positive effect id: RO:0002305 name: causally upstream of, negative effect comment: holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y +property_value: dc-creator "cjm" xsd:string property_value: http://purl.org/dc/terms/creator "cjm" xsd:string property_value: RO:0004050 RO:0002411 is_a: RO:0002411 ! causally upstream of @@ -23886,7 +24486,7 @@ is_a: RO:0004046 ! causally upstream of or within, negative effect id: RO:0002314 name: inheres in part of def: "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w." [] -property_value: IAO:0000116 "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" xsd:string +property_value: editor_note "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20064205 property_value: RO:0001900 RO:0001901 @@ -23899,50 +24499,47 @@ transitive_over: part_of ! part_of id: RO:0002323 name: mereotopologically related to def: "A mereological relationship or a topological relationship" [] +property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string -property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" xsd:string property_value: RO:0001900 RO:0001901 [Typedef] id: RO:0002324 name: developmentally related to def: "A relationship that holds between entities participating in some developmental process (GO:0032502)" [] +property_value: curator_notes "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string -property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" xsd:string + +[Typedef] +id: RO:0002326 +name: contributes to +property_value: curator_notes "In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. " xsd:string +property_value: editor_note "We would like to say\n\nif and only if\n exists c', p'\n c part_of c' and c' capable_of p\n and\n c capable_of p' and p' part_of p\nthen\n c contributes_to p\n\nHowever, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction." xsd:string +property_value: example_of_usage "ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity." xsd:string +property_value: example_of_usage "eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to \"ribosome binding\". And all three are part_of an eIF2 complex" xsd:string +property_value: example_of_usage "Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity." xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to xsd:string +is_a: capable_of_part_of ! capable of part of +is_a: part_of_structure_that_is_capable_of ! part of structure that is capable of [Typedef] id: RO:0002327 name: enables -property_value: IAO:0000112 "a particular instances of akt-2 enables some instance of protein kinase activity" xsd:string +property_value: curator_notes "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." xsd:string +property_value: curator_notes "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." xsd:string +property_value: example_of_usage "a particular instances of akt-2 enables some instance of protein kinase activity" xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000118 "catalyzes" xsd:string property_value: IAO:0000118 "executes" xsd:string property_value: IAO:0000118 "has" xsd:string property_value: IAO:0000118 "is catalyzing" xsd:string property_value: IAO:0000118 "is executing" xsd:string -property_value: IAO:0000232 "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." xsd:string -property_value: IAO:0000232 "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." xsd:string -is_a: RO:0002215 ! capable of +is_a: capable_of ! capable of inverse_of: RO:0002333 ! enabled by transitive_over: has_part ! has part transitive_over: RO:0002017 ! has component activity -[Typedef] -id: RO:0002328 -name: functionally related to -def: "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities." [] -property_value: IAO:0000117 "Chris Mungall" xsd:string -property_value: IAO:0000232 "This is a grouping relation that collects relations used for the purpose of connecting structure and function" xsd:string - -[Typedef] -id: RO:0002329 -name: part of structure that is capable of -def: "this relation holds between c and p when c is part of some c', and c' is capable of p." [] -property_value: IAO:0000117 "Chris Mungall" xsd:string -property_value: IAO:0000118 "false" xsd:boolean -holds_over_chain: part_of RO:0002215 {http://purl.obolibrary.org/obo/RO_0002581="true"} -is_a: RO:0002328 ! functionally related to - [Typedef] id: RO:0002331 name: involved in @@ -23961,8 +24558,8 @@ id: RO:0002333 name: enabled by def: "inverse of enables" [] property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: functionally_related_to ! functionally related to is_a: RO:0000057 ! has participant -is_a: RO:0002328 ! functionally related to [Typedef] id: RO:0002334 @@ -23993,14 +24590,19 @@ property_value: IAO:0000117 "Chris Mungall" xsd:string is_a: RO:0002334 ! regulated by [Typedef] -id: RO:0002352 -name: input of -def: "inverse of has input" [] -subset: ro-eco -subset: RO:0002259 +id: RO:0002354 +name: formed as result of property_value: IAO:0000117 "Chris Mungall" xsd:string -is_a: RO:0000056 ! participates in -is_a: RO:0002328 ! functionally related to +is_a: output_of ! output of + +[Typedef] +id: RO:0002379 +name: spatially coextensive with +def: "x spatially_coextensive_with y if and inly if x and y have the same location" [] +property_value: curator_notes "This relation is added for formal completeness. It is unlikely to be used in many practical scenarios" xsd:string +property_value: example_of_usage "A lump of clay and a statue" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: overlaps ! overlaps [Typedef] id: RO:0002384 @@ -24012,37 +24614,13 @@ domain: CARO:0000000 ! anatomical entity range: CARO:0000000 ! anatomical entity is_a: RO:0002324 ! developmentally related to -[Typedef] -id: RO:0002385 -name: has potential to developmentally contribute to -def: "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y" [] -property_value: IAO:0000114 IAO:0000428 -property_value: IAO:0000117 "Chris Mungall" xsd:string -is_a: RO:0002384 ! has developmental potential involving - -[Typedef] -id: RO:0002387 -name: has potential to develop into -def: "x has the potential to develop into y iff x develops into y or if x is capable of developing into y" [] -property_value: IAO:0000114 IAO:0000428 -property_value: IAO:0000117 "Chris Mungall" xsd:string -is_a: RO:0002384 ! has developmental potential involving - -[Typedef] -id: RO:0002388 -name: has potential to directly develop into -def: "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y" [] -property_value: IAO:0000114 IAO:0000428 -property_value: IAO:0000117 "Chris Mungall" xsd:string -is_a: RO:0002387 ! has potential to develop into - [Typedef] id: RO:0002404 name: causally downstream of def: "inverse of upstream of" [] property_value: IAO:0000114 IAO:0000428 property_value: IAO:0000117 "Chris Mungall" xsd:string -is_a: BFO:0000062 ! preceded by +is_a: preceded_by ! preceded_by is_a: RO:0002427 ! causally downstream of or within inverse_of: RO:0002411 ! causally upstream of @@ -24051,7 +24629,7 @@ id: RO:0002405 name: immediately causally downstream of property_value: IAO:0000114 IAO:0000428 property_value: IAO:0000117 "Chris Mungall" xsd:string -is_a: RO:0002087 ! immediately preceded by +is_a: immediately_preceded_by ! immediately preceded by is_a: RO:0002404 ! causally downstream of inverse_of: RO:0002412 ! immediately causally upstream of @@ -24059,10 +24637,11 @@ inverse_of: RO:0002412 ! immediately causally upstream of id: RO:0002410 name: causally related to def: "This relation groups causal relations between material entities and causal relations between processes" [] +property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +property_value: editor_note "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." xsd:string property_value: IAO:0000114 IAO:0000428 -property_value: IAO:0000116 "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string -property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +is_a: RO:0002609 ! related via dependence to [Typedef] id: RO:0002411 @@ -24071,7 +24650,7 @@ def: "p is causally upstream of q if and only if p precedes q and p and q are li property_value: IAO:0000114 IAO:0000428 property_value: IAO:0000117 "Chris Mungall" xsd:string is_transitive: true -is_a: BFO:0000063 ! precedes +is_a: precedes ! precedes is_a: RO:0002418 ! causally upstream of or within [Typedef] @@ -24089,7 +24668,7 @@ id: RO:0002418 name: causally upstream of or within def: "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q." [] synonym: "affects" RELATED [] -property_value: IAO:0000116 "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" xsd:string +property_value: editor_note "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000118 "influences (processual)" xsd:string is_transitive: true @@ -24109,6 +24688,7 @@ is_a: RO:0002501 ! causal relation between processes [Typedef] id: RO:0002428 name: involved in regulation of +def: "c involved in regulation of p if c is involved in some 'p' and p' regulates some p" [] def: "c involved in regulation of p if c is involved in some p' and p' regulates some p" [] property_value: IAO:0000117 "Chris Mungall" xsd:string holds_over_chain: RO:0002327 regulates @@ -24140,24 +24720,26 @@ is_a: RO:0002428 ! involved in regulation of id: RO:0002431 name: involved in or involved in regulation of def: "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" [] -property_value: IAO:0000116 "OWL does not allow defining object properties via a Union" xsd:string +property_value: editor_note "OWL does not allow defining object properties via a Union" xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000118 "involved in or reguates" xsd:string +is_a: functionally_related_to ! functionally related to is_a: RO:0002264 ! acts upstream of or within -is_a: RO:0002328 ! functionally related to -is_a: RO:0002500 ! causal agent in process +is_a: RO:0002500 ! causal agent in [Typedef] id: RO:0002432 +name: enables activity in name: is active in +def: "c executes activity in d if and only if c enables p and p occurs_in d" [] def: "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure." [GOC:cjm, GOC:dos] synonym: "enables activity in" EXACT [] -property_value: IAO:0000112 "A protein that enables activity in a cytosol." xsd:string +property_value: example_of_usage "A protein that enables activity in a cytosol." xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000118 "executes activity in" xsd:string holds_over_chain: RO:0002327 occurs_in {http://purl.obolibrary.org/obo/RO_0002581="true"} -is_a: RO:0002131 ! overlaps -is_a: RO:0002328 ! functionally related to +is_a: functionally_related_to ! functionally related to +is_a: overlaps ! overlaps [Typedef] id: RO:0002434 @@ -24165,11 +24747,11 @@ name: interacts with def: "A relationship that holds between two entities in which the processes executed by the two entities are causally connected." [] subset: ro-eco synonym: "in pairwise interaction with" EXACT [] -property_value: http://xmlns.com/foaf/0.1/page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI -property_value: IAO:0000116 "Considering relabeling as 'pairwise interacts with'" xsd:anyURI -property_value: IAO:0000116 "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." xsd:string +property_value: curator_notes "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." xsd:string +property_value: editor_note "Considering relabeling as 'pairwise interacts with'" xsd:anyURI +property_value: editor_note "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." xsd:string +property_value: foaf-page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI property_value: IAO:0000117 "Chris Mungall" xsd:string -property_value: IAO:0000232 "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." xsd:string property_value: seeAlso http://purl.obolibrary.org/obo/MI_0914 xsd:anyURI domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity @@ -24178,6 +24760,7 @@ is_symmetric: true [Typedef] id: RO:0002436 name: molecularly interacts with +def: "An interaction relationship in which the two partners are molecular entities and are executing molecular processes that are directly causally connected." [] def: "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other." [] property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000118 "binds" xsd:string @@ -24190,7 +24773,7 @@ is_a: RO:0002434 ! interacts with [Typedef] id: RO:0002447 name: phosphorylates -property_value: IAO:0000116 "Axiomatization to GO to be added later" xsd:string +property_value: editor_note "Axiomatization to GO to be added later" xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000118 "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." xsd:string is_a: RO:0002436 ! molecularly interacts with @@ -24198,6 +24781,8 @@ is_a: RO:0002436 ! molecularly interacts with [Typedef] id: RO:0002448 name: activity directly regulates activity of +name: molecularly controls +def: "Holds between molecular entities a and b when the execution of a activates or inhibits the activity of b" [] def: "Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B." [] synonym: "molecularly controls" EXACT [] property_value: IAO:0000117 "Chris Mungall" xsd:string @@ -24207,39 +24792,32 @@ is_a: RO:0002566 ! causally influences [Typedef] id: RO:0002449 name: activity directly negatively regulates activity of +name: molecularly decreases activity of def: "Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B." [] +def: "Holds between molecules a and b if and only if a executes a process that directly diminishes a process executed by b." [] synonym: "molecularly decreases activity of" EXACT [] property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000118 "inhibits" xsd:string -is_a: RO:0002448 ! activity directly regulates activity of +is_a: RO:0002448 ! molecularly controls [Typedef] id: RO:0002450 name: activity directly positively regulates activity of +name: molecularly increases activity of def: "Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B." [] +def: "Holds between molecules a and b if and only if a executes a process that directly activates a process executed by b." [] synonym: "molecularly increases activity of" EXACT [] property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000118 "activates" xsd:string -is_a: RO:0002448 ! activity directly regulates activity of +is_a: RO:0002448 ! molecularly controls [Typedef] id: RO:0002464 +name: helper property name: helper property (not for use in curation) +property_value: curator_notes "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." xsd:string +property_value: IAO:0000114 IAO:0000428 property_value: IAO:0000117 "Chris Mungall" xsd:string -property_value: IAO:0000232 "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." xsd:string - -[Typedef] -id: RO:0002473 -name: composed primarily of -def: "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y." [] -subset: ro-eco -property_value: IAO:0000112 "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" xsd:string -property_value: IAO:0000117 "Chris Mungall" xsd:string -property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/22293552 -property_value: RO:0001900 RO:0001901 -domain: BFO:0000040 ! material entity -range: BFO:0000040 ! material entity -is_a: has_part ! has part [Typedef] id: RO:0002479 @@ -24259,19 +24837,20 @@ is_a: RO:0002564 ! molecular interaction relation helper property [Typedef] id: RO:0002500 +name: causal agent in name: causal agent in process def: "A relationship between a material entity and a process where the material entity has some causal role that influences the process" [] property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations is_a: RO:0002595 ! causal relation between material entity and a process -inverse_of: RO:0002608 ! process has causal agent +inverse_of: RO:0002608 ! has causal agent [Typedef] id: RO:0002501 name: causal relation between processes def: "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q." [] +property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations -property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string domain: BFO:0000003 ! occurrent range: BFO:0000003 ! occurrent is_a: RO:0002410 ! causally related to @@ -24285,14 +24864,57 @@ property_value: seeAlso BFO:0000169 [Typedef] id: RO:0002506 name: causal relation between material entities -property_value: IAO:0000116 "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" xsd:string +property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +property_value: editor_note "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations -property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_a: RO:0002410 ! causally related to +[Typedef] +id: RO:0002507 +name: determined by +def: "s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s." [] +subset: ro-eco +property_value: dc-creator "Chris Mungall" xsd:string +property_value: dc-creator "Pier Buttigieg" xsd:string +property_value: editor_note "The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future" xsd:string +property_value: example_of_usage "A coral reef environment is determined by a particular coral reef" xsd:string +property_value: http://purl.org/dc/terms/creator "Chris Mungall" xsd:string +property_value: http://purl.org/dc/terms/creator "Pier Buttigieg" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/24330602 +property_value: IAO:0000589 "determined by (system to material entity)" xsd:string +domain: RO:0002577 ! system +range: BFO:0000040 ! material entity +is_a: part_of ! part_of +is_a: RO:0002509 ! determined by part of +is_a: RO:0002559 ! causally influenced by +inverse_of: RO:0002508 ! determines + +[Typedef] +id: RO:0002508 +name: determines +def: "inverse of determined by" [] +subset: ro-eco +subset: RO:0002259 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000589 "determines (material entity to system)" xsd:string +is_a: RO:0002566 ! causally influences + +[Typedef] +id: RO:0002509 +name: determined by part of +def: "s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w." [] +subset: ro-eco +property_value: IAO:0000117 "Chris Mungall" xsd:string +domain: RO:0002577 ! system +range: BFO:0000040 ! material entity +holds_over_chain: RO:0002507 part_of {http://purl.obolibrary.org/obo/RO_0002582="true"} +is_a: overlaps ! overlaps +is_a: RO:0002506 ! causal relation between material entities + [Typedef] id: RO:0002559 name: causally influenced by @@ -24305,7 +24927,7 @@ inverse_of: RO:0002566 ! causally influences [Typedef] id: RO:0002563 name: interaction relation helper property -property_value: http://xmlns.com/foaf/0.1/page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI +property_value: foaf-page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29 is_a: RO:0002464 ! helper property (not for use in curation) @@ -24340,17 +24962,17 @@ is_a: RO:0002412 ! immediately causally upstream of id: RO:0002584 name: has part structure that is capable of def: "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p" [] -property_value: IAO:0000112 "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" xsd:string +property_value: example_of_usage "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string -holds_over_chain: has_part RO:0002215 -is_a: RO:0002328 ! functionally related to +holds_over_chain: has_part capable_of +is_a: functionally_related_to ! functionally related to is_a: RO:0002595 ! causal relation between material entity and a process [Typedef] id: RO:0002595 name: causal relation between material entity and a process def: "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity." [] -property_value: IAO:0000116 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +property_value: editor_note "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations domain: BFO:0000040 ! material entity @@ -24361,39 +24983,50 @@ is_a: RO:0002410 ! causally related to id: RO:0002596 name: capable of regulating def: "Holds between c and p if and only if c is capable of some activity a, and a regulates p." [] -property_value: IAO:0000112 "pyrethroid -> growth" xsd:string +property_value: example_of_usage "pyrethroid -> growth" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations -holds_over_chain: RO:0002215 regulates -is_a: RO:0002500 ! causal agent in process +holds_over_chain: capable_of regulates +is_a: RO:0002500 ! causal agent in [Typedef] id: RO:0002597 name: capable of negatively regulating def: "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p." [] property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations -holds_over_chain: RO:0002215 negatively_regulates +holds_over_chain: capable_of negatively_regulates is_a: RO:0002596 ! capable of regulating [Typedef] id: RO:0002598 name: capable of positively regulating def: "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p." [] -property_value: IAO:0000112 "renin -> arteriolar smooth muscle contraction" xsd:string +property_value: example_of_usage "renin -> arteriolar smooth muscle contraction" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations -holds_over_chain: RO:0002215 positively_regulates +holds_over_chain: capable_of positively_regulates is_a: RO:0002596 ! capable of regulating [Typedef] id: RO:0002608 +name: has causal agent name: process has causal agent def: "Inverse of 'causal agent in process'" [] +def: "Inverse of 'causal agent in'" [] property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations is_a: RO:0002410 ! causally related to +[Typedef] +id: RO:0002609 +name: obsolete related via dependence to +name: related via dependence to +def: "A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes." [] +property_value: curator_notes "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string +is_obsolete: true + [Typedef] id: RO:0002629 name: directly positively regulates def: "Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2." [] +def: "Process(P1) directly regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2." [] property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "directly positively regulates (process to process)" xsd:string property_value: RO:0004049 RO:0002578 @@ -24404,6 +25037,7 @@ is_a: RO:0002578 ! directly regulates id: RO:0002630 name: directly negatively regulates def: "Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2." [] +def: "Process(P1) directly regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2." [] property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "directly negatively regulates (process to process)" xsd:string property_value: RO:0004050 RO:0002578 @@ -24415,7 +25049,7 @@ id: RO:0004031 name: enables subfunction def: "Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P." [] holds_over_chain: RO:0002327 has_part -is_a: RO:0002328 ! functionally related to +is_a: functionally_related_to ! functionally related to created_by: cjm creation_date: 2018-01-25T23:20:13Z @@ -24478,10 +25112,122 @@ is_a: RO:0002418 ! causally upstream of or within created_by: cjm creation_date: 2018-03-13T23:55:19Z +[Typedef] +id: bearer_of +name: bearer of +namespace: uberon +def: "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence" [] +xref: RO:0000053 +property_value: editor_note "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." xsd:string +property_value: example_of_usage "this apple is bearer of this red color" xsd:string +property_value: example_of_usage "this vase is bearer of this fragility" xsd:string +property_value: IAO:0000111 "bearer of" xsd:string +property_value: IAO:0000118 "bearer_of" xsd:string +property_value: IAO:0000118 "is bearer of" xsd:string +property_value: RO:0001900 RO:0001901 +range: BFO:0000020 ! specifically dependent continuant + +[Typedef] +id: capable_of +name: capable of +namespace: uberon +def: "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. " [] +subset: ro-eco +xref: RO:0002215 +property_value: curator_notes "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." xsd:string +property_value: example_of_usage "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" xsd:string +property_value: example_of_usage "osteoclast SubClassOf 'capable of' some 'bone resorption'" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "has function realized in" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20123131 +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/21208450 +domain: BFO:0000004 ! independent continuant +range: BFO:0000015 ! process +is_a: capable_of_part_of ! capable of part of +is_a: functionally_related_to ! functionally related to +expand_expression_to: "RO_0000053 some (RO_0000054 only ?Y)" [] + +[Typedef] +id: capable_of_part_of +name: capable of part of +namespace: uberon +def: "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." [] +xref: RO:0002216 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "has function in" xsd:string +property_value: seeAlso "defining-property-chains-involving-reflexivity" +holds_over_chain: capable_of part_of {http://purl.obolibrary.org/obo/RO_0002582="true"} +is_a: functionally_related_to ! functionally related to +is_a: RO:0002500 ! causal agent in +expand_expression_to: "RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))" [] + +[Typedef] +id: composed_primarily_of +name: composed primarily of +namespace: uberon +def: "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y." [] +def: "x composed_primarily_of y iff: more than half of the mass of x is made from parts of y" [] +subset: ro-eco +xref: RO:0002473 +property_value: example_of_usage "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/22293552 +property_value: RO:0001900 RO:0001901 +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity +is_a: has_part ! has part + +[Typedef] +id: contains +name: contains +namespace: uberon +subset: ro-eco +xref: RO:0001019 +property_value: IAO:0000111 "contains" xsd:string +property_value: RO:0001900 RO:0001901 + +[Typedef] +id: contains_process +name: contains process +namespace: uberon +def: "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t" [] +comment: Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant +xref: BFO:0000067 +property_value: IAO:0000111 "site of" xsd:string +property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl + [Typedef] id: correlates_with name: correlates_with +[Typedef] +id: curator_notes +name: curator note +name: curator notes +namespace: uberon +def: "An administrative note of use for a curator but of no use for a user" [] +xref: IAO:0000232 +property_value: IAO:0000111 "curator note" xsd:string +property_value: IAO:0000114 IAO:0000122 +property_value: IAO:0000117 "PERSON:Alan Ruttenberg" xsd:string +is_metadata_tag: true + +[Typedef] +id: dc-creator +name: creator +namespace: uberon +xref: http://purl.org/dc/elements/1.1/creator +is_metadata_tag: true + +[Typedef] +id: dc-source +name: derived from resource +namespace: uberon +xref: http://purl.org/dc/elements/1.1/source +is_metadata_tag: true + [Typedef] id: decreased_in_magnitude_relative_to name: decreased_in_magnitude_relative_to @@ -24492,6 +25238,75 @@ range: PATO:0000001 ! quality is_transitive: true is_a: different_in_magnitude_relative_to ! different_in_magnitude_relative_to +[Typedef] +id: developmentally_contributes_to +name: developmentally contributes to +name: developmentally_contributes_to +namespace: uberon +def: "inverse of has developmental contribution from" [] +subset: RO:0002259 +xref: RO:0002255 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +holds_over_chain: develops_into part_of +is_a: has_potential_to_developmentally_contribute_to ! has potential to developmentally contribute to +is_a: RO:0002286 ! developmentally succeeded by + +[Typedef] +id: developmentally_preceded_by +name: developmentally preceded by +namespace: uberon +def: "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p" [] +comment: This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from +xref: RO:0002258 +property_value: curator_notes "In general you should not use this relation to make assertions - use one of the more specific relations below this one" xsd:string +property_value: editor_note "false" xsd:boolean +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +domain: BFO:0000002 ! continuant +range: BFO:0000002 ! continuant +is_a: RO:0002324 ! developmentally related to +inverse_of: RO:0002286 ! developmentally succeeded by + +[Typedef] +id: develops_from +name: develops from +name: develops_from +namespace: uberon +def: "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y" [] +comment: This is the transitive form of the develops from relation +xref: RO:0002202 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000117 "Melissa Haendel" xsd:string +property_value: IAO:0000117 "Terry Meehan" xsd:string +domain: BFO:0000004 ! independent continuant +range: BFO:0000004 ! independent continuant +holds_over_chain: part_of develops_from +is_transitive: true +is_a: developmentally_preceded_by ! developmentally preceded by +is_a: has_developmental_contribution_from ! has developmental contribution from +inverse_of: develops_into ! develops_into +transitive_over: part_of ! part_of + +[Typedef] +id: develops_into +name: develops into +name: develops_into +namespace: uberon +def: "inverse of develops from" [] +subset: RO:0002259 +xref: RO:0002203 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000117 "Terry Meehan" xsd:string +is_transitive: true +is_a: has_potential_to_develop_into ! has potential to develop into +is_a: has_potential_to_directly_develop_into ! has potential to directly develop into +is_a: RO:0002286 ! developmentally succeeded by + [Typedef] id: different_in_magnitude_relative_to name: different_in_magnitude_relative_to @@ -24509,12 +25324,93 @@ range: PATO:0000001 ! quality created_by: cjm creation_date: 2009-08-26T02:50:08Z +[Typedef] +id: editor_note +name: editor note +namespace: uberon +def: "An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology." [] +xref: IAO:0000116 +property_value: IAO:0000111 "editor note" xsd:string +property_value: IAO:0000114 IAO:0000122 +property_value: IAO:0000117 "PERSON:Daniel Schober" xsd:string +property_value: IAO:0000119 GROUP:OBI: xsd:string +is_metadata_tag: true + +[Typedef] +id: example_of_usage +name: example of usage +namespace: uberon +def: "A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not" [] +xref: IAO:0000112 +property_value: IAO:0000111 "example" xsd:string +property_value: IAO:0000114 IAO:0000122 +property_value: IAO:0000117 "PERSON:Daniel Schober" xsd:string +property_value: IAO:0000119 GROUP:OBI: xsd:string +is_metadata_tag: true + +[Typedef] +id: external_definition +name: external_definition +namespace: uberon +def: "An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class." [https://orcid.org/0000-0002-6601-2165] +comment: This annotation property may be replaced with an annotation property from an external ontology such as IAO +xref: UBPROP:0000001 +is_metadata_tag: true + +[Typedef] +id: foaf-page +name: page +namespace: uberon +xref: http://xmlns.com/foaf/0.1/page +is_metadata_tag: true + +[Typedef] +id: functionally_related_to +name: functionally related to +namespace: uberon +def: "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities." [] +xref: RO:0002328 +property_value: curator_notes "This is a grouping relation that collects relations used for the purpose of connecting structure and function" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string + +[Typedef] +id: has_component +name: has component +namespace: uberon +def: "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] +subset: ro-eco +xref: RO:0002180 +property_value: curator_notes "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." xsd:string +property_value: editor_note "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: RO:0001900 RO:0001901 +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:Componency +is_a: has_part ! has part + [Typedef] id: has_cross_section name: has_cross_section def: "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2." [PATOC:CJM] comment: Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round. +[Typedef] +id: has_developmental_contribution_from +name: has developmental contribution from +namespace: uberon +def: "x has developmental contribution from y iff x has some part z such that z develops from y" [] +xref: RO:0002254 +property_value: example_of_usage "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +domain: BFO:0000004 ! independent continuant +domain: CARO:0000000 ! anatomical entity +range: CARO:0000000 ! anatomical entity +range: CARO:0000003 ! anatomical structure +holds_over_chain: has_part develops_from +is_transitive: true +is_a: developmentally_preceded_by ! developmentally preceded by +inverse_of: developmentally_contributes_to ! developmentally contributes to + [Typedef] id: has_dividend_entity name: has_dividend_entity @@ -24539,26 +25435,81 @@ domain: PATO:0001470 ! proportionality to range: PATO:0000001 ! quality is_a: has_ratio_quality ! has_ratio_quality +[Typedef] +id: has_member +name: has member +namespace: uberon +def: "has member is a mereological relation between a collection and an item." [] +xref: RO:0002351 +property_value: IAO:0000119 "SIO" xsd:string +property_value: RO:0001900 RO:0001901 +is_a: has_part ! has part + [Typedef] id: has_part name: has part name: has_part +namespace: chebi_ontology namespace: external +namespace: uberon def: "a core relation that holds between a whole and its part" [] def: "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2." [PATOC:CJM] comment: We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. xref: BFO:0000051 +property_value: editor_note "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." xsd:string +property_value: editor_note "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: editor_note "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string +property_value: example_of_usage "my body has part my brain (continuant parthood, two material entities)" xsd:string +property_value: example_of_usage "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" xsd:string +property_value: example_of_usage "this year has part this day (occurrent parthood)" xsd:string property_value: IAO:0000111 "has part" xsd:string -property_value: IAO:0000112 "my body has part my brain (continuant parthood, two material entities)" xsd:string -property_value: IAO:0000112 "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" xsd:string -property_value: IAO:0000112 "this year has part this day (occurrent parthood)" xsd:string -property_value: IAO:0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." xsd:string -property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string -property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string property_value: IAO:0000118 "has_part" xsd:string property_value: RO:0001900 RO:0001901 +is_cyclic: false is_transitive: true -is_a: RO:0002131 ! overlaps +is_a: overlaps ! overlaps + +[Typedef] +id: has_potential_to_develop_into +name: has potential to develop into +namespace: uberon +def: "x has the potential to develop into y iff x develops into y or if x is capable of developing into y" [] +xref: RO:0002387 +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002384 ! has developmental potential involving + +[Typedef] +id: has_potential_to_developmentally_contribute_to +name: has potential to developmentally contribute to +namespace: uberon +def: "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y" [] +xref: RO:0002385 +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: RO:0002384 ! has developmental potential involving + +[Typedef] +id: has_potential_to_directly_develop_into +name: has potential to directly develop into +namespace: uberon +def: "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y" [] +xref: RO:0002388 +property_value: IAO:0000114 IAO:0000428 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: has_potential_to_develop_into ! has potential to develop into + +[Typedef] +id: has_quality +name: has quality +namespace: uberon +def: "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence" [] +xref: RO:0000086 +property_value: editor_note "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." xsd:string +property_value: example_of_usage "this apple has quality this red color" xsd:string +property_value: IAO:0000118 "has_quality" xsd:string +range: BFO:0000019 ! quality +is_a: bearer_of ! bearer of [Typedef] id: has_ratio_quality @@ -24570,6 +25521,25 @@ range: PATO:0000001 ! quality id: has_relative_magnitude name: has_relative_magnitude +[Typedef] +id: immediately_preceded_by +name: immediately preceded by +name: immediately_preceded_by +namespace: uberon +def: "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)" [] +comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) +synonym: "directly preceded by" EXACT [] +synonym: "is directly preceded by" EXACT [] +synonym: "is immediately preceded by" EXACT [SIO:000251] +synonym: "starts_at_end_of" EXACT [] +xref: RO:0002087 +property_value: external_definition "A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]." xsd:string {source="SIO:000251"} +property_value: IAO:0000117 "David Osumi-Sutherland" xsd:string +property_value: IAO:0000118 "starts_at_end_of" xsd:string +property_value: seeAlso SIO:000251 +is_a: preceded_by ! preceded_by +inverse_of: RO:0002090 ! immediately precedes + [Typedef] id: increased_in_magnitude_relative_to name: increased_in_magnitude_relative_to @@ -24580,6 +25550,18 @@ range: PATO:0000001 ! quality is_transitive: true is_a: different_in_magnitude_relative_to ! different_in_magnitude_relative_to +[Typedef] +id: input_of +name: input of +namespace: uberon +def: "inverse of has input" [] +subset: ro-eco +subset: RO:0002259 +xref: RO:0002352 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: functionally_related_to ! functionally related to +is_a: RO:0000056 ! participates in + [Typedef] id: inversely_associated_with name: inversely_associated_with @@ -24606,8 +25588,8 @@ name: is opposite of name: is_opposite_of def: "x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x)." [] xref: RO:0002604 -property_value: IAO:0000112 "'anterior end of organism' is-opposite-of 'posterior end of organism'" xsd:string -property_value: IAO:0000112 "'increase in temperature' is-opposite-of 'decrease in temperature'" xsd:string +property_value: example_of_usage "'anterior end of organism' is-opposite-of 'posterior end of organism'" xsd:string +property_value: example_of_usage "'increase in temperature' is-opposite-of 'decrease in temperature'" xsd:string is_metadata_tag: true is_class_level: true @@ -24616,12 +25598,62 @@ id: is_unit_of name: is_unit_of namespace: pato.ontology +[Typedef] +id: located_in +name: located in +name: located_in +namespace: uberon +def: "a relation between two independent continuants, the target and the location, in which the target is entirely within the location" [] +xref: RO:0001025 +property_value: dc-source http://www.obofoundry.org/ro/#OBO_REL:located_in xsd:string +property_value: editor_note "Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus" xsd:string +property_value: editor_note "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: example_of_usage "my brain is located in my head" xsd:string +property_value: example_of_usage "this rat is located in this cage" xsd:string +property_value: IAO:0000111 "located in" xsd:string +property_value: IAO:0000118 "located_in" xsd:string +property_value: RO:0001900 RO:0001901 +domain: BFO:0000004 {http://purl.obolibrary.org/obo/IAO_0000116="This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation."} ! independent continuant +range: BFO:0000004 {http://purl.obolibrary.org/obo/IAO_0000116="This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation."} ! independent continuant +is_transitive: true + +[Typedef] +id: location_of +name: location of +name: location_of +namespace: uberon +def: "a relation between two independent continuants, the location and the target, in which the target is entirely within the location" [] +xref: RO:0001015 +property_value: editor_note "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: example_of_usage "my head is the location of my brain" xsd:string +property_value: example_of_usage "this cage is the location of this rat" xsd:string +property_value: IAO:0000111 "is location of" xsd:string +property_value: IAO:0000118 "location_of" xsd:string +property_value: RO:0001900 RO:0001901 +is_transitive: true +inverse_of: located_in ! located in + +[Typedef] +id: member_of +name: member of +namespace: uberon +def: "is member of is a mereological relation between a item and a collection." [] +xref: RO:0002350 +property_value: example_of_usage "An organism that is a member of a population of organisms" xsd:string +property_value: IAO:0000118 "is member of" xsd:string +property_value: IAO:0000118 "member part of" xsd:string +property_value: IAO:0000119 "SIO" xsd:string +property_value: RO:0001900 RO:0001901 +is_a: part_of ! part_of +inverse_of: has_member ! has member + [Typedef] id: negatively_regulates name: negatively regulates namespace: external def: "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2." [] xref: RO:0002212 +property_value: IAO:0000114 IAO:0000125 property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations property_value: IAO:0000589 "negatively regulates (process to process)" xsd:string @@ -24645,23 +25677,54 @@ property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl domain: BFO:0000003 ! occurrent range: BFO:0000004 ! independent continuant holds_over_chain: part_of occurs_in -inverse_of: BFO:0000067 ! contains process +inverse_of: contains_process ! contains process +transitive_over: part_of ! part_of + +[Typedef] +id: output_of +name: output of +namespace: uberon +def: "inverse of has output" [] +subset: ro-eco +subset: RO:0002259 +xref: RO:0002353 +property_value: IAO:0000117 "Chris Mungall" xsd:string +is_a: functionally_related_to ! functionally related to +is_a: RO:0000056 ! participates in + +[Typedef] +id: overlaps +name: overlaps +namespace: uberon +def: "A overlaps B if they share some part in common." [] +def: "x overlaps y if and only if there exists some z such that x has part z and z part of y" [] +subset: ro-eco +xref: RO:0002131 +property_value: IAO:0000114 IAO:0000125 +property_value: RO:0001900 RO:0001901 +holds_over_chain: has_part overlaps +holds_over_chain: has_part part_of {http://purl.obolibrary.org/obo/RO_0002582="true"} +holds_over_chain: part_of part_of +is_a: RO:0002323 ! mereotopologically related to transitive_over: part_of ! part_of +expand_expression_to: "BFO_0000051 some (BFO_0000050 some ?Y)" [] +expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" [] [Typedef] id: part_of name: part of name: part_of namespace: external +namespace: uberon def: "a core relation that holds between a part and its whole" [] xref: BFO:0000050 +property_value: editor_note "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string +property_value: editor_note "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string +property_value: editor_note "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string +property_value: example_of_usage "my brain is part of my body (continuant parthood, two material entities)" xsd:string +property_value: example_of_usage "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string +property_value: example_of_usage "this day is part of this year (occurrent parthood)" xsd:string property_value: IAO:0000111 "is part of" xsd:string -property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string -property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string -property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string -property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string -property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string -property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string property_value: IAO:0000118 "part_of" xsd:string property_value: RO:0001900 RO:0001901 property_value: RO:0040042 BFO:0000002 @@ -24675,9 +25738,20 @@ property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_a property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf property_value: seeAlso http://www.obofoundry.org/ro/#OBO_REL:part_of xsd:string is_transitive: true -is_a: RO:0002131 ! overlaps +is_a: overlaps ! overlaps inverse_of: has_part ! has part +[Typedef] +id: part_of_structure_that_is_capable_of +name: part of structure that is capable of +namespace: uberon +def: "this relation holds between c and p when c is part of some c', and c' is capable of p." [] +xref: RO:0002329 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "false" xsd:boolean +holds_over_chain: part_of capable_of {http://purl.obolibrary.org/obo/RO_0002581="true"} +is_a: functionally_related_to ! functionally related to + [Typedef] id: positively_regulates name: positively regulates @@ -24694,6 +25768,70 @@ is_a: regulates ! regulates is_a: RO:0002304 ! causally upstream of, positive effect inverse_of: RO:0002336 ! positively regulated by +[Typedef] +id: preceded_by +name: preceded by +name: preceded_by +namespace: uberon +def: "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] +def: "X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X)" [] +subset: ro-eco +synonym: "is preceded by" EXACT [SIO:000249] +synonym: "takes place after" EXACT [Allen:precedes] +xref: BFO:0000062 +property_value: dc-source http://www.obofoundry.org/ro/#OBO_REL:preceded_by xsd:string +property_value: editor_note "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." xsd:string +property_value: IAO:0000111 "preceded by" xsd:string +property_value: IAO:0000118 "is preceded by" xsd:string +property_value: IAO:0000118 "preceded_by" xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent +holds_over_chain: part_of preceded_by +is_transitive: true +is_a: RO:0002086 ! ends after +inverse_of: precedes ! precedes + +[Typedef] +id: precedes +name: precedes +namespace: uberon +def: "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." [] +subset: ro-eco +xref: BFO:0000063 +property_value: IAO:0000111 "precedes" xsd:string +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent +holds_over_chain: part_of precedes +is_transitive: true +is_a: RO:0002222 ! temporally related to + +[Typedef] +id: produced_by +name: produced by +name: produced_by +namespace: uberon +def: "a produced_by b iff some process that occurs_in b has_output a." [] +subset: ro-eco +xref: RO:0003001 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Melissa Haendel" xsd:string +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity + +[Typedef] +id: produces +name: produces +namespace: uberon +def: "a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix." [] +comment: Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue. +subset: ro-eco +xref: RO:0003000 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Melissa Haendel" xsd:string +domain: BFO:0000040 ! material entity +range: BFO:0000040 ! material entity +inverse_of: produced_by ! produced_by + [Typedef] id: realized_by name: realized_by @@ -24710,14 +25848,14 @@ name: regulates namespace: external def: "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2." [] xref: RO:0002211 +property_value: curator_notes "Regulation precludes parthood; the regulatory process may not be within the regulated process." xsd:string +property_value: editor_note "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" xsd:string property_value: IAO:0000114 IAO:0000125 -property_value: IAO:0000116 "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000117 "David Hill" xsd:string property_value: IAO:0000117 "Tanya Berardini" xsd:string property_value: IAO:0000119 "GO" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations -property_value: IAO:0000232 "Regulation precludes parthood; the regulatory process may not be within the regulated process." xsd:string property_value: IAO:0000589 "regulates (processual)" xsd:string property_value: IAO:0000600 "false" xsd:boolean domain: BFO:0000015 ! process @@ -24727,6 +25865,30 @@ is_transitive: true is_a: RO:0002411 ! causally upstream of inverse_of: RO:0002334 ! regulated by +[Typedef] +id: results_in_developmental_progression_of +name: results in developmental progression of +def: "p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss)." [] +property_value: editor_note "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint." xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: seeAlso Ontology:extensions +domain: GO:0008150 ! biological_process +range: CARO:0000003 ! anatomical structure +is_a: RO:0002324 ! developmentally related to + +[Typedef] +id: results_in_formation_of +name: results in formation of +property_value: example_of_usage "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists." xsd:string +property_value: example_of_usage "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)" xsd:string +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 GOC:mtg_berkeley_2013 xsd:string +is_a: results_in_developmental_progression_of ! results in developmental progression of +is_a: RO:0002234 ! has output +inverse_of: RO:0002354 ! formed as result of + [Typedef] id: similar_in_magnitude_relative_to name: similar_in_magnitude_relative_to diff --git a/pato-full.owl b/pato-full.owl index 651fd636..27f4e547 100644 --- a/pato-full.owl +++ b/pato-full.owl @@ -8,17 +8,19 @@ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" + xmlns:core="http://purl.obolibrary.org/obo/uberon/core#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:pato="http://purl.obolibrary.org/obo/pato#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:swrl="http://www.w3.org/2003/11/swrl#" + xmlns:chebi="http://purl.obolibrary.org/obo/chebi#3" xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#" xmlns:swrlb="http://www.w3.org/2003/11/swrlb#" xmlns:terms="http://purl.org/dc/terms/" xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + OBO-Edit 2.3.1 07:02:2018 10:27 quality @@ -42,6 +44,11 @@ + editor preferred term + + The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English) + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> editor preferred term @@ -50,7 +57,17 @@ + example + A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + IAO:0000112 + uberon + example_of_usage + true + example_of_usage + example of usage example of usage @@ -59,6 +76,11 @@ + has curation status + PERSON:Alan Ruttenberg + PERSON:Bill Bug + PERSON:Melanie Courtot + OBI_0000281 has curation status @@ -67,7 +89,31 @@ + definition + The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions. + 2012-04-05: +Barry Smith + +The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. + +Can you fix to something like: + +A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. + +Alan Ruttenberg + +Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. + +On the specifics of the proposed definition: + +We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. + +Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. + +We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> definition definition @@ -77,7 +123,17 @@ + editor note + An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology. + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obfoundry.org/obo/obi> + IAO:0000116 + uberon + editor_note + true + editor_note + editor note editor note @@ -86,7 +142,12 @@ + term editor + Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people + 20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115. + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> term editor @@ -95,7 +156,11 @@ + alternative term + An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent) + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> alternative term @@ -104,7 +169,12 @@ + definition source + formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007 + PERSON:Daniel Schober + Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> definition source @@ -112,20 +182,43 @@ - + + has obsolescence reason + Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification. + PERSON:Alan Ruttenberg + PERSON:Melanie Courtot + has obsolescence reason + - + + curator note + + An administrative note of use for a curator but of no use for a user + PERSON:Alan Ruttenberg + IAO:0000232 + uberon + curator_notes + true + curator_notes + curator note + curator notes + + imported from + For external terms/classes, the ontology from which the term was imported + PERSON:Alan Ruttenberg + PERSON:Melanie Courtot + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> imported from @@ -133,14 +226,32 @@ - + + expand expression to + ObjectProperty: RO_0002104 +Label: has plasma membrane part +Annotations: IAO_0000424 "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.org/obo/owl/GO#GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)" + + A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones + Chris Mungall + expand expression to + expand expression to + + OBO foundry unique label + An alternative name for a class or property which is unique across the OBO Foundry. + The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools . + PERSON:Alan Ruttenberg + PERSON:Bjoern Peters + PERSON:Chris Mungall + PERSON:Melanie Courtot + GROUP:OBO Foundry <http://obofoundry.org/> OBO foundry unique label @@ -148,18 +259,55 @@ - + + elucidation + person:Alan Ruttenberg + Person:Barry Smith + Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms + elucidation + + + + + + + + has axiom id + Person:Alan Ruttenberg + Person:Alan Ruttenberg + A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI + has axiom label + + term replaced by + + Add as annotation triples in the granting ontology + Use on obsolete terms, relating the term to another term that can be used as a substitute + Person:Alan Ruttenberg + Person:Alan Ruttenberg + term replaced by term replaced by + + + + + + + + + + + + @@ -173,14 +321,35 @@ + defined by inverse + + + + + + - + + relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y + The general property hierarchy is: + + "directly P" SubPropertyOf "P" + Transitive(P) + +Where we have an annotation assertion + + "directly P" "is direct form of" "P" + If we have the annotation P is-direct-form-of Q, and we have inverses P' and Q', then it follows that P' is-direct-form-of Q' + Chris Mungall + Chris Mungall + is direct form of + @@ -222,25 +391,72 @@ - + + cjm + 2018-03-14T00:03:16Z + is positive form of + - + + cjm + 2018-03-14T00:03:24Z + is negative form of + - + + part-of is homeomorphic for independent continuants. + R is homemorphic for C iff (1) there exists some x,y such that x R y, and x and y instantiate C and (2) for all x, if x is an instance of C, and there exists some y some such that x R y, then it follows that y is an instance of C. + cjm + 2018-10-21T19:46:34Z + R homeomorphic-for C expands to: C SubClassOf R only C. Additionally, for any class D that is disjoint with C, we can also expand to C DisjointWith R some D, D DisjointWith R some C. + is homeomorphic for + + + + + + + + + An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class. + UBPROP:0000001 + uberon + external_definition + true + external_definition + This annotation property may be replaced with an annotation property from an external ontology such as IAO + external_definition + + + + + An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class. + + + + + + + + + Manually annotated by ChEBI Team + + + Term not to be used for direct annotation @@ -249,6 +465,7 @@ + Term not to be used for direct manual annotation @@ -257,6 +474,7 @@ + AGR slim @@ -265,6 +483,7 @@ + Aspergillus GO slim @@ -273,6 +492,7 @@ + Candida GO slim @@ -281,6 +501,7 @@ + ChEMBL protein targets summary @@ -289,6 +510,7 @@ + FlyBase Drosophila GO ribbon slim @@ -297,6 +519,7 @@ + Generic GO slim @@ -305,6 +528,7 @@ + Metagenomics GO slim @@ -313,6 +537,7 @@ + Mouse GO slim @@ -321,6 +546,7 @@ + PIR GO slim @@ -329,6 +555,7 @@ + Plant GO slim @@ -337,6 +564,7 @@ + Fission yeast GO slim @@ -345,6 +573,7 @@ + Yeast GO slim @@ -443,6 +672,16 @@ + eco subset + + + + + + + + + abstract upper-level terms not directly useful for analysis @@ -450,7 +689,14 @@ - + + + uberon + dc-creator + true + dc-creator + creator + @@ -462,7 +708,14 @@ - + + + uberon + dc-source + true + dc-source + derived from resource + @@ -594,6 +847,14 @@ + + + + has_synonym_type + + + + @@ -614,6 +875,12 @@ + + + + + + @@ -634,6 +901,12 @@ + + + + + + @@ -654,7 +927,14 @@ - + + + uberon + foaf-page + true + foaf-page + page + @@ -697,6 +977,7 @@ A continuant cannot be part of an occurrent: use 'participates in'. An BFO:0000050 external quality + uberon part_of part_of part of @@ -728,9 +1009,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. has_part BFO:0000051 + chebi_ontology external quality + uberon has_part + false has_part We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. has part @@ -759,14 +1043,34 @@ A continuant cannot have an occurrent as part: use 'participates in'. preceded by + X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X) x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other. is preceded by preceded_by http://www.obofoundry.org/ro/#OBO_REL:preceded_by + BFO:0000062 + is preceded by + takes place after + uberon + preceded_by + preceded_by preceded by + preceded_by + + + + is preceded by + SIO:000249 + + + + + takes place after + Allen:precedes + @@ -783,7 +1087,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. precedes x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. + BFO:0000063 + uberon + precedes + precedes + precedes precedes @@ -825,8 +1134,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. site of [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t + BFO:0000067 + uberon + contains_process + contains_process Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant + contains process contains process @@ -861,6 +1175,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. bearer_of is bearer of + RO:0000053 + uberon + bearer_of + bearer_of + bearer of bearer of @@ -905,6 +1224,160 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + this red color is a quality of this apple + a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence + A quality inheres in its bearer at all times for which the quality exists. + is quality of + quality_of + quality of + + + + + + + + + + this apple has quality this red color + a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence + A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist. + has_quality + RO:0000086 + uberon + has_quality + has_quality + has quality + has quality + + + + + + + + + + is location of + my head is the location of my brain + this cage is the location of this rat + a relation between two independent continuants, the location and the target, in which the target is entirely within the location + Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + location_of + + RO:0001015 + uberon + location_of + location_of + location of + location_of + + + + + + + + + + + + + + + contained in + Containment is location not involving parthood, and arises only where some immaterial continuant is involved. + Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition): + Intended meaning: +domain: material entity +range: spatial region or site (immaterial continuant) + + contained_in + + + contained in + + + + + + + + contains + + RO:0001019 + uberon + contains + + contains + contains + contains + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + located in + my brain is located in my head + this rat is located in this cage + a relation between two independent continuants, the target and the location, in which the target is entirely within the location + Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus + Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + located_in + + http://www.obofoundry.org/ro/#OBO_REL:located_in + RO:0001025 + uberon + located_in + located_in + located in + located_in + + + + + + This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation. + + + + + + This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation. + + + + @@ -982,6 +1455,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. 2017-07-19T17:30:36Z has ligand + + + + A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function. + GOC:dos + @@ -1081,11 +1560,35 @@ A continuant cannot have an occurrent as part: use 'participates in'. + X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) David Osumi-Sutherland starts_at_end_of + A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]. + RO:0002087 + directly preceded by + is directly preceded by + is immediately preceded by + starts_at_end_of + uberon + immediately_preceded_by + immediately_preceded_by X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) immediately preceded by + immediately_preceded_by + + + + + A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]. + SIO:000251 + + + + + is immediately preceded by + SIO:000251 + @@ -1125,10 +1628,17 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A overlaps B if they share some part in common. x overlaps y if and only if there exists some z such that x has part z and z part of y + BFO_0000051 some (BFO_0000050 some ?Y) http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y) + RO:0002131 + uberon + overlaps + overlaps + overlaps overlaps @@ -1152,7 +1662,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity. For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit. + RO:0002180 + uberon + has_component + has_component + has component has component @@ -1162,19 +1677,33 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + + + + x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y Chris Mungall David Osumi-Sutherland Melissa Haendel Terry Meehan + RO:0002202 + uberon + develops_from + develops_from This is the transitive form of the develops from relation develops from + develops_from @@ -1191,8 +1720,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. Chris Mungall David Osumi-Sutherland Terry Meehan + RO:0002203 + uberon + develops_into + develops_into develops into + develops_into @@ -1236,6 +1770,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2. Chris Mungall @@ -1281,10 +1816,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974) osteoclast SubClassOf 'capable of' some 'bone resorption' + A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. Chris Mungall has function realized in @@ -1292,7 +1829,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)". RO_0000053 some (RO_0000054 only ?Y) + RO:0002215 + uberon + capable_of + capable_of + capable of capable of @@ -1307,10 +1849,16 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p. Chris Mungall has function in RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y)) + RO:0002216 + uberon + capable_of_part_of + capable_of_part_of + capable of part of capable of part of @@ -1331,6 +1879,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. + x actively participates in y if and only if x participates in y and x realizes some active role Chris Mungall agent in @@ -1350,6 +1899,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. Chris Mungall has agent + has active participant obsolete has active participant true @@ -1365,6 +1915,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. Chris Mungall Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends. + https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. @@ -1381,6 +1932,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. + p has direct input c iff c is a participant in p, c is present at the start of p, and the state of c is modified during p. p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p. Chris Mungall consumes @@ -1390,13 +1942,31 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + + p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p. + Chris Mungall + produces + + has output + + + + + + + @@ -1405,6 +1975,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. x has developmental contribution from y iff x has some part z such that z develops from y Chris Mungall + RO:0002254 + uberon + has_developmental_contribution_from + has_developmental_contribution_from + has developmental contribution from has developmental contribution from @@ -1422,8 +1997,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. inverse of has developmental contribution from Chris Mungall + RO:0002255 + uberon + developmentally_contributes_to + developmentally_contributes_to developmentally contributes to + developmentally_contributes_to @@ -1440,7 +2020,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. false Chris Mungall In general you should not use this relation to make assertions - use one of the more specific relations below this one + RO:0002258 + uberon + developmentally_preceded_by + developmentally_preceded_by This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from + developmentally preceded by developmentally preceded by @@ -1456,6 +2041,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision. c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes. + c involved in regulation of p if c enables 'p' and p' causally upstream of p acts upstream of @@ -1471,6 +2057,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway. + c acts upstream of or within p if c is enables 'p' and p' causally upstream of or within p c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process. affects acts upstream of or within @@ -1491,12 +2078,47 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + + + p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss). + This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint. + Chris Mungall + results_in_developmental_progression_of + results in developmental progression of + + + + + + + + + + + + an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists. + every "endocardial cushion formation" (GO:0003272) results_in_formation_of some "endocardial cushion" (UBERON:0002062) + + Chris Mungall + GOC:mtg_berkeley_2013 + results_in_formation_of + results in formation of + + + + + cjm cjm holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y causally upstream of, positive effect @@ -1510,6 +2132,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. + cjm cjm holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y causally upstream of, negative effect @@ -1572,6 +2195,33 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity. + Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity. + eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to "ribosome binding". And all three are part_of an eIF2 complex + We would like to say + +if and only if + exists c', p' + c part_of c' and c' capable_of p + and + c capable_of p' and p' part_of p +then + c contributes_to p + +However, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction. + Chris Mungall + http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to + In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. + contributes to + + + + @@ -1605,6 +2255,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities. Chris Mungall This is a grouping relation that collects relations used for the purpose of connecting structure and function + RO:0002328 + uberon + functionally_related_to + functionally_related_to + functionally related to functionally related to @@ -1618,9 +2273,18 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + this relation holds between c and p when c is part of some c', and c' is capable of p. Chris Mungall false + RO:0002329 + uberon + part_of_structure_that_is_capable_of + part_of_structure_that_is_capable_of + part of structure that is capable of part of structure that is capable of @@ -1663,6 +2327,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + inverse of enables Chris Mungall enabled by @@ -1710,6 +2379,45 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + An organism that is a member of a population of organisms + is member of is a mereological relation between a item and a collection. + is member of + member part of + SIO + + RO:0002350 + uberon + member_of + member_of + member of + member of + + + + + + + + + + has member is a mereological relation between a collection and an item. + SIO + + RO:0002351 + uberon + has_member + has_member + has member + has member + + + + @@ -1717,13 +2425,66 @@ A continuant cannot have an occurrent as part: use 'participates in'. inverse of has input Chris Mungall + RO:0002352 + uberon + input_of + input_of + input of input of + + + + + + inverse of has output + Chris Mungall + RO:0002353 + uberon + output_of + + + output_of + output of + output of + + + + + + + + + Chris Mungall + formed as result of + + + + + + + + + + + + + + + A lump of clay and a statue + x spatially_coextensive_with y if and inly if x and y have the same location + Chris Mungall + This relation is added for formal completeness. It is unlikely to be used in many practical scenarios + spatially coextensive with + + + + @@ -1743,8 +2504,14 @@ A continuant cannot have an occurrent as part: use 'participates in'. + x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y Chris Mungall + RO:0002385 + uberon + has_potential_to_developmentally_contribute_to + has_potential_to_developmentally_contribute_to + has potential to developmentally contribute to has potential to developmentally contribute to @@ -1755,8 +2522,14 @@ A continuant cannot have an occurrent as part: use 'participates in'. + x has the potential to develop into y iff x develops into y or if x is capable of developing into y x has the potential to develop into y iff x develops into y or if x is capable of developing into y Chris Mungall + RO:0002387 + uberon + has_potential_to_develop_into + has_potential_to_develop_into + has potential to develop into has potential to develop into @@ -1767,8 +2540,14 @@ A continuant cannot have an occurrent as part: use 'participates in'. + x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y Chris Mungall + RO:0002388 + uberon + has_potential_to_directly_develop_into + has_potential_to_directly_develop_into + has potential to directly develop into has potential to directly develop into @@ -1804,6 +2583,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. + This relation groups causal relations between material entities and causal relations between processes This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. @@ -1899,6 +2679,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different + c involved in regulation of p if c is involved in some 'p' and p' regulates some p c involved in regulation of p if c is involved in some p' and p' regulates some p Chris Mungall involved in regulation of @@ -1971,11 +2752,13 @@ Each of these 3 primitives can be composed to yield a cross-product of different A protein that enables activity in a cytosol. + c executes activity in d if and only if c enables p and p occurs_in d c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure. Chris Mungall executes activity in enables activity in + enables activity in is active in @@ -2022,6 +2805,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different + An interaction relationship in which the two partners are molecular entities and are executing molecular processes that are directly causally connected. An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other. Chris Mungall binds @@ -2056,9 +2840,11 @@ Each of these 3 primitives can be composed to yield a cross-product of different Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. + Holds between molecular entities a and b when the execution of a activates or inhibits the activity of b Chris Mungall molecularly controls activity directly regulates activity of + molecularly controls @@ -2073,10 +2859,12 @@ Each of these 3 primitives can be composed to yield a cross-product of different Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B. + Holds between molecules a and b if and only if a executes a process that directly diminishes a process executed by b. Chris Mungall inhibits molecularly decreases activity of activity directly negatively regulates activity of + molecularly decreases activity of @@ -2091,10 +2879,12 @@ Each of these 3 primitives can be composed to yield a cross-product of different Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B. + Holds between molecules a and b if and only if a executes a process that directly activates a process executed by b. Chris Mungall activates molecularly increases activity of activity directly positively regulates activity of + molecularly increases activity of @@ -2102,8 +2892,10 @@ Each of these 3 primitives can be composed to yield a cross-product of different + Chris Mungall This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning. + helper property helper property (not for use in curation) @@ -2117,10 +2909,16 @@ Each of these 3 primitives can be composed to yield a cross-product of different 'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate' x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y. + x composed_primarily_of y iff: more than half of the mass of x is made from parts of y Chris Mungall + RO:0002473 + uberon + RO:0002473 + composed_primarily_of + composed_primarily_of composed primarily of @@ -2169,6 +2967,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different A relationship between a material entity and a process where the material entity has some causal role that influences the process + causal agent in causal agent in process @@ -2214,6 +3013,73 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + + + + + A coral reef environment is determined by a particular coral reef + s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s. + The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future + Chris Mungall + + determined by (system to material entity) + Chris Mungall + Pier Buttigieg + Chris Mungall + Pier Buttigieg + + determined by + + + + + + + + + inverse of determined by + Chris Mungall + determines (material entity to system) + + + determines + + + + + + + + + + + + + + + + s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w. + Chris Mungall + + determined by part of + + + + + + + + + true + + + + @@ -2371,18 +3237,33 @@ Each of these 3 primitives can be composed to yield a cross-product of different Inverse of 'causal agent in process' + Inverse of 'causal agent in' + has causal agent process has causal agent + + + + A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + obsolete related via dependence to + related via dependence to + true + + + + Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2. + Process(P1) directly regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2. directly positively regulates (process to process) @@ -2397,6 +3278,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2. + Process(P1) directly regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2. directly negatively regulates (process to process) @@ -2405,6 +3287,52 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + + + + + + + + + a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix. + Melissa Haendel + RO:0003000 + uberon + produces + + produces + Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue. + produces + produces + + + + + + + + + + + a produced_by b iff some process that occurs_in b has_output a. + Melissa Haendel + RO:0003001 + uberon + produced_by + + produced_by + produced by + produced_by + + + + @@ -2835,9 +3763,18 @@ Association is weaker than correlation or proportionality. These relations may b + + + + entity + + + + + @@ -2860,6 +3797,7 @@ Association is weaker than correlation or proportionality. These relations may b + @@ -2889,9 +3827,26 @@ Association is weaker than correlation or proportionality. These relations may b + A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything. + b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]) independent continuant + + + + b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]) + + + + + + + + + + spatial region + @@ -2900,8 +3855,32 @@ Association is weaker than correlation or proportionality. These relations may b An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. + p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) process + + + + p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) + + + + + + + + + + + + + + + + + A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances. + realizable entity + @@ -2930,9 +3909,54 @@ Association is weaker than correlation or proportionality. These relations may b + A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same. + b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n &gt; 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i &lt; j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004]) + b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]) specifically dependent continuant + + + + b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]) + + + + + + + + + + object aggregate + + + + + + + + + site + + + + + + + + + + + + + + + A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time. + b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001]) + + generically dependent continuant + @@ -2940,12 +3964,34 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. material entity + + + + + + + + + + + immaterial entity + + + + @@ -2961,6 +4007,7 @@ Association is weaker than correlation or proportionality. These relations may b + anatomical structure connected anatomical structure @@ -2991,7 +4038,11 @@ Association is weaker than correlation or proportionality. These relations may b - + + Material anatomical entity that is a member of an individual species or is a viral or viroid particle. + organism or virus + Melissa Haendel + 9/18/11 organism or virus or viroid @@ -3006,9 +4057,90 @@ Association is weaker than correlation or proportionality. These relations may b + + + + A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances. + chemical entity + chebi_ontology + CHEBI:24431 + + chemical entity + + + + + chemical entity + UniProt + + + + - + + + In general, a mineral is a chemical substance that is normally crystalline formed and has been formed as a result of geological processes. The term also includes metamict substances (naturally occurring, formerly crystalline substances whose crystallinity has been destroyed by ionising radiation) and can include naturally occurring amorphous substances that have never been crystalline ('mineraloids') such as georgite and calciouranoite as well as substances formed by the action of geological processes on bigenic compounds ('biogenic minerals'). + mineral + chebi_ontology + Minerale + minerales + minerals + mineraux + CHEBI:46662 + + mineral + + + + + mineral + ChEBI + + + + + Minerale + ChEBI + + + + + minerales + ChEBI + + + + + minerals + ChEBI + + + + + mineraux + ChEBI + + + + + + + + + A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types. + chebi_ontology + Chemische Substanz + CHEBI:59999 + + chemical substance + + + + + Chemische Substanz + ChEBI + @@ -3022,6 +4154,508 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + + + + + + + + + + + + A material entity which determines an environmental system. + environmental feature + + + + + A material entity which determines an environmental system. + DOI:10.1186/2041-1480-4-43 + NM:nm + ORCID:0000-0002-4366-3088 + + + + + + + + + A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system. + portion of environmental material + environmental material + + + + + A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system. + DOI:10.1186/2041-1480-4-43 + MA:ma + ORCID:0000-0002-4366-3088 + URL:http://ontology.buffalo.edu/smith/articles/niches.html + + + + + + + + + A system which has the disposition to environ one or more material entities. + environment + environmental system + + + + + A system which has the disposition to environ one or more material entities. + DOI:10.1186/2041-1480-4-43 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An anthropogenic environment is an environmental system which is the product of human activity. + anthropogenic environment + + + + + + + + + + + + + + + + + + + + + + + + An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition. + natural environment + + + + + An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition. + https://en.wikipedia.org/wiki/Anthropization + https://en.wikipedia.org/wiki/Natural_environment + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A process during which a natural environmental system is altered by human action. + anthropization + anthropisation + + + + + A process during which a natural environmental system is altered by human action. + https://en.wikipedia.org/wiki/Anthropization + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system which is determined by materials bearing roughly homogeneous qualities. + environmental system determined by a quality + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system within which an environmental material strongly influences the system's composition and properties. + environmental system determined by a material + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system which is determined by a living organism. + host-associated environment + environmental system determined by an organism + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system determined by an animal. + animal environment + Metazoan-associated environment + animal-associated environment + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system determined by part of a living or dead animal, or a whole small animal. + environment associated with an animal part or small animal + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system determined by part of a living or dead plant, or a whole small plant. + environment associated with a plant part or small plant + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system which includes both living and non-living components. + ecosystem + + + + + An environmental system which includes both living and non-living components. + https://en.wikipedia.org/wiki/Ecosystem + + + + + + + + + + + + + + + + + + + + + + + A process in which includes the components of an environmental system as participants. + environmental system process + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental process which is driven by the action of humans. + anthropogenic environmental process + + + + @@ -3091,6 +4725,7 @@ Association is weaker than correlation or proportionality. These relations may b + receptor activity true @@ -3569,6 +5204,7 @@ Association is weaker than correlation or proportionality. These relations may b A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. + Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. janelomax 2012-09-19T15:05:24Z GO:0000004 @@ -3599,6 +5235,13 @@ Association is weaker than correlation or proportionality. These relations may b A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. GOC:pdt + + + + Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. + GOC:go_curators + GOC:isa_complete + @@ -3908,6 +5551,44 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity. + regulation of receptor activity + biological_process + GO:0010469 + regulation of signaling receptor activity + + + + + Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity. + GOC:dph + GOC:tb + + + + @@ -4095,8 +5776,10 @@ Association is weaker than correlation or proportionality. These relations may b + A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. + Wikipedia:Biological_membrane cellular_component GO:0016020 @@ -4109,6 +5792,7 @@ Association is weaker than correlation or proportionality. These relations may b membrane + membrane @@ -5011,6 +6695,44 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. + rfoulger + 2011-08-01T02:45:27Z + GO:0004872 + GO:0019041 + receptor activity + receptor activity involved in signal transduction + molecular_function + GO:0038023 + + + + + + + + signaling receptor activity + + + + + Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. + GOC:bf + GOC:signaling + + + + + receptor activity involved in signal transduction + GOC:bf + + + + @@ -5151,7 +6873,7 @@ Association is weaker than correlation or proportionality. These relations may b A prolongation or process extending from a cell, e.g. a flagellum or axon. GOC:jl - http://www.cogsci.princeton.edu/~wn/ + http://www.cogsci.princeton.edu/~wn/ @@ -6471,6 +8193,27 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + A compound molecular function in which an effector function is controlled by one or more regulatory components. + molecular_function + GO:0060089 + + + molecular transducer activity + + + + + A compound molecular function in which an effector function is controlled by one or more regulatory components. + GOC:dos + GOC:pdt + + + + @@ -7583,6 +9326,870 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity. + rfoulger + 2010-12-02T09:28:47Z + negative regulation of receptor activity + biological_process + GO:2000272 + negative regulation of signaling receptor activity + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity. + GOC:obol + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of signaling receptor activity. + rfoulger + 2010-12-02T09:28:50Z + biological_process + GO:2000273 + positive regulation of signaling receptor activity + + + + + Any process that activates or increases the frequency, rate or extent of signaling receptor activity. + GOC:obol + + + + + + + + + data item + + + + + + + + + information content entity + + + + + + + + + + + + + + + + + + + + + + + + curation status specification + + The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. + Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting) + PERSON:Bill Bug + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + OBI_0000266 + curation status specification + + + + + + + + + data about an ontology part is a data item about a part of an ontology, for example a term + Person:Alan Ruttenberg + data about an ontology part + + + + + + + + + + + + + + + + + + + + obsolescence reason specification + + The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. + The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology. + PERSON: Alan Ruttenberg + PERSON: Melanie Courtot + obsolescence reason specification + + + + + + + + + + + + + + + + + + The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are "natural kinds" and the latter arbitrary collections of entities. + A denotator type indicates how a term should be interpreted from an ontological perspective. + Alan Ruttenberg + Barry Smith, Werner Ceusters + denotator type + + + + + + + + + all + root + + + + + all + + + + + + all + + + + + + + + + + Teleostomi + + + + + + + + + bony vertebrates + Euteleostomi + + + + + bony vertebrates + + + + + + + + + + biota + cellular organisms + + + + + biota + + + + + + biota + + + + + + + + + + Dipnotetrapodomorpha + + + + + + + + + Boreotheria + Boreoeutheria + + + + + Boreotheria + + + + + + + + + + Homo/Pan/Gorilla group + Homininae + + + + + Homo/Pan/Gorilla group + + + + + + + + + + eucaryotes + eukaryotes + Eucarya + Eucaryotae + Eukarya + Eukaryotae + eukaryotes + Eukaryota + + + + + eucaryotes + + + + + + eucaryotes + + + + + + eukaryotes + + + + + + eukaryotes + + + + + + Eucarya + + + + + + Eucarya + + + + + + Eucaryotae + + + + + + Eucaryotae + + + + + + Eukarya + + + + + + Eukarya + + + + + + Eukaryotae + + + + + + Eukaryotae + + + + + + eukaryotes + + + + + + eukaryotes + + + + + + + + + + Euarchontoglires + + + + + + + + + Anthropoidea + Simiiformes + + + + + Anthropoidea + + + + + + + + + + ape + apes + Hominoidea + + + + + ape + + + + + + apes + + + + + + + + + + tetrapods + Tetrapoda + + + + + tetrapods + + + + + + + + + + amniotes + Amniota + + + + + amniotes + + + + + + + + + + Theria + Theria <Mammalia> + + + + + Theria + + + + + + + + + + Fungi/Metazoa group + opisthokonts + Opisthokonta + + + + + Fungi/Metazoa group + + + + + + opisthokonts + + + + + + + + + + metazoans + multicellular animals + Animalia + animals + Metazoa + + + + + metazoans + + + + + + multicellular animals + + + + + + Animalia + + + + + + animals + + + + + + + + + + Bilateria + + + + + + + + + deuterostomes + Deuterostomia + + + + + deuterostomes + + + + + + + + + + Haplorrhini + + + + + + + + + mammals + mammals + Mammalia + + + + + mammals + + + + + + mammals + + + + + + + + + + Eumetazoa + + + + + + + + + chordates + chordates + Chordata + + + + + chordates + + + + + + chordates + + + + + + + + + + Vertebrata + vertebrates + vertebrates + Vertebrata <Metazoa> + + + + + Vertebrata + + + + + + vertebrates + + + + + + vertebrates + + + + + + + + + + Gnathostomata + jawed vertebrates + Gnathostomata <vertebrate> + + + + + Gnathostomata + + + + + + jawed vertebrates + + + + + + + + + + Sarcopterygii + + + + + + + + + Craniata + Craniata <chordata> + + + + + Craniata + + + + + + + + + + eutherian mammals + placental mammals + placentals + Placentalia + placentals + Eutheria + + + + + eutherian mammals + + + + + + placental mammals + + + + + + placentals + + + + + + Placentalia + + + + + + placentals + + + + + + + + + + primate + Primata + primates + Primates + + + + + primate + + + + + + Primata + + + + + + primates + + + + + + + + + + Catarrhini + + + + + + + + + great apes + Pongidae + Hominidae + + + + + great apes + + + + + + Pongidae + + + + + + + + + + humans + Homo + + + + + humans + + + + + + + + + + human + man + humans + Homo sapiens + + + + + human + + + + + + man + + + + + @@ -7601,6 +10208,7 @@ Association is weaker than correlation or proportionality. These relations may b A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities quality (PATO) PATO:0000072 + trait quality PATO:0000001 quality @@ -8364,7 +10972,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. + A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. quality PATO:0000051 @@ -8373,7 +10981,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. + A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. PATOC:GVG @@ -8651,7 +11259,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. + A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. quality PATO:0000069 @@ -8660,7 +11268,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. + A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. PATOC:GVG @@ -9271,7 +11879,7 @@ Association is weaker than correlation or proportionality. These relations may b - A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. + A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. quality PATO:0000117 @@ -9281,7 +11889,7 @@ Association is weaker than correlation or proportionality. These relations may b - A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. + A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. WordNet:WordNet @@ -15984,7 +18592,7 @@ Association is weaker than correlation or proportionality. These relations may b - A size quality which is relatively low. + A size quality which is relatively low. hypoplasia underdeveloped @@ -15999,7 +18607,7 @@ Association is weaker than correlation or proportionality. These relations may b - A size quality which is relatively low. + A size quality which is relatively low. PATOC:GVG @@ -48741,7 +51349,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality that has a value that is decreased compared to normal or average. + A quality that has a value that is decreased compared to normal or average. George Gkoutos 2011-06-16T06:40:15Z @@ -48752,7 +51360,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality that has a value that is decreased compared to normal or average. + A quality that has a value that is decreased compared to normal or average. PATOC:GVG @@ -48807,7 +51415,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality of an object that has a value that is decreased compared to normal or average. + A quality of an object that has a value that is decreased compared to normal or average. George Gkoutos 2011-06-16T06:51:54Z @@ -48818,7 +51426,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality of an object that has a value that is decreased compared to normal or average. + A quality of an object that has a value that is decreased compared to normal or average. PATOC:GVG @@ -55906,8 +58514,8 @@ height'). An oriented quality inhering in a bearer by virtue of the bearer's being abnormally placed or arranged. - 2018-05-21T22:44:38Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040000 heterotaxic @@ -55926,8 +58534,8 @@ height'). Shaped like a ring - 2018-05-24T03:56:53Z + http://orcid.org/0000-0001-5208-3432 annular quality PATO:0040001 @@ -55947,8 +58555,8 @@ height'). A positional quality inhering in a bearer by virtue of some aspect of that bearer beginning from a position on another entity. - 2018-05-24T04:10:53Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040002 @@ -55962,8 +58570,8 @@ height'). The ability of a pathogen to produce an infectious disease or disorder in an another organism. - 2018-08-02T04:24:52Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040003 pathogenicity @@ -55982,8 +58590,8 @@ height'). A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness. - 2018-08-02T04:39:30Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040004 plush @@ -56003,8 +58611,8 @@ height'). An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally. - 2018-11-12T22:54:16Z + http://orcid.org/0000-0001-5208-3432 posteroventrally oriented quality PATO:0040005 @@ -56024,8 +58632,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown. - 2018-11-12T18:09:59Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040006 crown like @@ -56044,8 +58652,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell. - 2018-11-12T18:12:47Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040007 shell shaped @@ -56064,8 +58672,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band. - 2018-11-12T18:15:10Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040008 fringed @@ -56085,8 +58693,8 @@ height'). A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl. - 2018-11-12T18:17:01Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040009 bowl shaped @@ -56105,8 +58713,8 @@ height'). Mobility relative to a second entity. - 2018-11-12T18:20:08Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040010 For example, distinct anteroposterior mobility of palatine relative to mesethmoid. @@ -56126,8 +58734,8 @@ height'). Immobility relative to a second entity. - 2018-11-12T18:21:07Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040011 For example: distinct anteroposterior immobility of palatine relative to mesethmoid. @@ -56147,8 +58755,8 @@ height'). A shape that is in the form of a plug, being tube-like and expanded on one end. - 2018-11-12T18:24:41Z + http://orcid.org/0000-0001-5208-3432 plug like quality PATO:0040012 @@ -56168,8 +58776,8 @@ height'). An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially. - 2018-11-12T18:27:57Z + http://orcid.org/0000-0001-5208-3432 dorsomedially directed quality PATO:0040013 @@ -56189,8 +58797,8 @@ height'). A shape that is in the form of a narrow strip encircling an object. - 2018-11-12T18:31:51Z + http://orcid.org/0000-0001-5208-3432 band like band-like strip like @@ -56214,8 +58822,8 @@ height'). A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling that of a trough, being narrow, long, and boxlike in shape. - 2018-11-12T18:35:51Z + http://orcid.org/0000-0001-5208-3432 trough like trough-like trough-shaped @@ -56238,8 +58846,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides. - 2018-11-12T18:39:48Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040016 pentagonal @@ -56259,8 +58867,8 @@ height'). A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal. - 2018-11-12T19:01:51Z + http://orcid.org/0000-0001-5208-3432 dysgenesis quality PATO:0040017 @@ -56280,8 +58888,8 @@ height'). Fibrosis is the formation of excess fibrous connective tissue in an organ or tissue in a reparative or reactive process. - 2018-11-12T23:16:17Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040019 fibrotic @@ -56300,8 +58908,8 @@ height'). Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal. - 2018-11-16T22:52:49Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040020 spayed female @@ -56314,7 +58922,7 @@ height'). The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.. - + http://orcid.org/0000-0001-5208-3432 quality PATO:0040021 unpaired @@ -56333,8 +58941,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape. - 2018-11-19T21:49:07Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040022 flared @@ -56347,8 +58955,8 @@ height'). An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body. - 2018-11-19T21:54:33Z + http://orcid.org/0000-0001-5208-3432 disto-medial orientation distomedial quality @@ -56369,7 +58977,7 @@ height'). The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism. - + http://orcid.org/0000-0001-5208-3432 paired quality PATO:0040024 @@ -56389,7 +58997,7 @@ height'). A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present. - + http://orcid.org/0000-0001-5208-3432 quality PATO:0040025 lesioned @@ -59176,15 +61784,434 @@ height'). + + + + + + + + + + + + + 2 + + + + + + + + + + + + + + Examples include: population, community, species (meaning the collection of organisms that makes up a species, not the taxonomic rank), and family. + + A material entity that consists of two or more organisms, viruses, or viroids. + A material entity that consists of two or more organisms, viruses, or viroids. + group of organism + organism collection + May be of the same or different species. + collection of organisms + collection of organisms + + + + - + + + + This a general term that can include every organism of a species living in an area or any subset of them. Subclasses can be more specific as needed. + + A collection of organisms, all of the same species, that live in the same place. + ISBN:0878932739 + It is sometimes difficult to define the physical boundaries of a population. In the case of sexually reproducing organisms, the individuals within a population have the potential to reproduce with one another during the course of their lifetimes. 'Community', as often used to describe a group of humans, is a type of population. + +Classes for population already exist in IDO ('organism population', IDO_0000509) and OBI ('population', OBI_0000181). The definitions should be standardized across OBO Foundry ontologies and only one term used. + population of organisms + + + + + + + + + + + + + + 2 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A community of at least two different species, living in a particular area. Must have at least two populations of different species as members. + Not sure if the equivalancy axiom specifies that both populations are located in the same site. + multispecies community + ISBN:0865423504 + Ecological community is defined broadly here, but includes both ecological interactions (inherited from parent term community) and spatial co-existence. It may be used to describe every organisms living in an area, but is often used to refer only to organisms of a particular taxon or guild (e.g., the plant community, the insect community, the herbivore community). The word community, as it often used to describe a group of humans living together, is a type of single-species collection of organisms, not an ecological community. + ecological community + - + + + + + + + + + + + + + + + + + + + + + A quality that inheres in a biological population. + See Chris's comments on population qualities at: http://code.google.com/p/popcomm-ontology/issues/detail?id=4. These may not belong under BFO:quality. May be better to call them population characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2. + Includes qualities like population size, population growth rate, carrying capacity, immigration rate, emigration rate, fecundity, and death rate. A population quality may depend on the qualities of individual organisms in the population, but cannot be measured or described for a single organism. This term may be replaced by a PATO term. + quality of a population + + + + + + + + + + + + + + + + + + + + + + + + + + + A quality that inheres in a community. + These may not belong under BFO:quality. May be better to call them community characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2. + Includes qualities like diversity, species richness, stability, resilience, community structure, number of trophic levels. A community quality may depend on the qualities of individual organism in the community, but cannot be measured or described for a single individual. + quality of an ecological community + + + + + + + + + + A collection of organisms that has as parts every organism of given species and no organisms of any other species. + At the moment there is no way to specify in an OWL axiom that the collection includes every individual of a species. This should be added, if possible. + This term is neutral with respect to which organisms are included in a species. Membership will depend on the species concept and the taxonomic assertions used to define the species. These criteria must be specified by the user. + species as a collection of organisms + + + + + + + + + + + + + + + + + + + + 1 + + + + + + + 2 + + + + + + + + A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species. + collection of organisms of the same species + single-species collection of organisms + + + + + + + + + + + + + + + + + + 2 + + + + + + + + + + + + + + A collection of organisms of the same species that has as members only humans. + human community + human population + collection of humans + + + + + + + + + + A collection of organisms of the same species whose members are all either genealogically related to each other or have mated with each other. + Biological or social relations are covered by RO_0002437 (biotically interacts with), but that relations does provide an easy way to specify that two entities are interacting with each other (participating in the same interaction). Until that axiom is specified, the logical definition of this term is incomplete. + These relations can include shared values, occupying the same spatial regkion. A community be be a single species collection of organsisms (as in a human community, which is also a type of population) or a or multi-species collection of organisms (as in an ecological community). + community + + + + + + + + + + A collection of organisms that consists of two or more organisms from at least two species. + Need to add axiom to specify that it has at a mimum members of two different species, but not sure how to specify that. Can't say "('has member' only ('member of' min 2 'species as a collection of organisms'))". + + multi-species collection of organisms + + + + + + + + + + + + + + + + + + A material entity that is one or more organisms, viruses or viroids. + organismal entity + + + + + + + + + A plant structure (PO:0005679) which is a whole organism. + genet (broad) + ramet (broad) + planta entera (Spanish, exact) + 植物体全体 (Japanese, exact) + bush (narrow) + frutex (narrow) + frutices (narrow) + gametophyte (narrow) + herb (narrow) + liana (narrow) + prothalli (narrow) + prothallium (narrow) + prothallus (narrow) + seedling (narrow) + shrub (narrow) + sporophyte (narrow) + suffrutex (narrow) + suffrutices (narrow) + tree (narrow) + vine (narrow) + woody clump (narrow) + clonal colony (related) + colony (related) + whole plant + + + + + + + + + An anatomical structure that is or was part of a plant, or was derived from a part of a plant. + estructura vegetal (Spanish, exact) + 植物 構造 (Japanese, exact) + plant structure + + + + + + + + + An anatomical entity that is or was part of a plant. + entidad anat&#243mica vegetal (Spanish, exact) + 植物 解剖学（形態）的実体 (Japanese, exact) + plant anatomical entity + + + + + + + + + A material entity consisting of multiple components that are causally integrated. + May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43 + Chris Mungall + http://www.jbiomedsem.com/content/4/1/43 + system + + + + + + + + + Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. + + AAO:0010841 + AEO:0000000 + BILA:0000000 + BIRNLEX:6 + CARO:0000000 + EHDAA2:0002229 + FBbt:10000000 + FBbt_root:00000000 + FMA:62955 + HAO:0000000 + MA:0000001 + NCIT:C12219 + TAO:0100000 + TGMA:0001822 + UMLS:C1515976 + WBbt:0000100 + XAO:0000000 + ZFA:0100000 + uberon + UBERON:0001062 + + anatomical entity + + + + + Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. + + FMA:62955 + + + + + UMLS:C1515976 + ncithesaurus:Anatomic_Structure_System_or_Substance + + + + + + + + + + + + + + + + @@ -59199,15 +62226,200 @@ height'). + + + + + example to be eventually removed + + + + + + + + + The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job + Person:Alan Ruttenberg + failed exploratory term + + + + + + + + + Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete. + metadata complete + + + + + + + + + term created to ease viewing/sort terms for development purpose, and will not be included in a release + organizational term + + + + + + + + + + Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release." + ready for release + + + + + + + + + Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors. + metadata incomplete + + + + + + + + + Nothing done yet beyond assigning a unique class ID and proposing a preferred term. + uncurated + + + + + + All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor. pending final vetting + + + + + Core is an instance of a grouping of terms from an ontology or ontologies. It is used by the ontology to identify main classes. + PERSON: Alan Ruttenberg + PERSON: Melanie Courtot + core + + + + + + + + + placeholder removed + + + + + + + + + An editor note should explain what were the merged terms and the reason for the merge. + terms merged + + + + + + + + + This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use. + term imported + + + + + + + + + This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created. + term split + + + + + + + + + Hard to give a definition for. Intuitively a "natural kind" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents. + Alan Ruttenberg + A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf + universal + + + + + + + + + A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal + "definitions", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal. + Alan Ruttenberg + defined class + + + + + + + + + A named class expression is a logical expression that is given a name. The name can be used in place of the expression. + named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions + Alan Ruttenberg + named class expression + + + + + + + + + Terms with this status should eventually replaced with a term from another ontology. + Alan Ruttenberg + group:OBI + to be replaced with external ontology term + + + + + + + + + + A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues. + Alan Ruttenberg + group:OBI + requires discussion + + + + @@ -59443,6 +62655,14 @@ This interpretation is *not* the same as an at-all-times relation + + + + + + + + @@ -59453,6 +62673,28 @@ This interpretation is *not* the same as an at-all-times relation + + + + + + + + + + + + + + + + + + + + + + @@ -59470,19 +62712,19 @@ This interpretation is *not* the same as an at-all-times relation - + - + - + - + @@ -59589,10 +62831,9 @@ This interpretation is *not* the same as an at-all-times relation - - - - + + + @@ -59600,10 +62841,9 @@ This interpretation is *not* the same as an at-all-times relation - - - - + + + @@ -59611,9 +62851,10 @@ This interpretation is *not* the same as an at-all-times relation - - + + + @@ -59621,9 +62862,10 @@ This interpretation is *not* the same as an at-all-times relation - - - + + + + @@ -59650,6 +62892,65 @@ This interpretation is *not* the same as an at-all-times relation + + true + GP(X) part_of complex(Y) enables MF(Z) -> X contributes_to Z + contrib to MF + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z), e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity' @@ -59660,9 +62961,10 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + + @@ -59671,9 +62973,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + @@ -59681,10 +62983,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + - @@ -59719,9 +63020,10 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + + @@ -59740,10 +63042,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - - + + + @@ -60123,9 +63424,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + @@ -60134,9 +63435,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + diff --git a/pato-simple.json b/pato-simple.json index 04eba7d0..84895c03 100644 --- a/pato-simple.json +++ b/pato-simple.json @@ -417,6 +417,11 @@ "val" : "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities", "xrefs" : [ "PATOC:GVG" ] }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "trait", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", "val" : "quality (PATO)" @@ -2947,6 +2952,38 @@ }, "type" : "CLASS", "lbl" : "dystrophic" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000057", + "meta" : { + "definition" : { + "val" : "a relation between a process and a continuant, in which the continuant is somehow involved in the process", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this process has participant this input material (or this output material)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this blood coagulation has participant this blood clot" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_participant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has participant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this investigation has participant this investigator" + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:has_participant" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has participant" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002630", "meta" : { @@ -3444,6 +3481,47 @@ }, "type" : "CLASS", "lbl" : "severe increased temperature" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0000053", + "meta" : { + "definition" : { + "val" : "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0000053" + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this vase is bearer of this fragility" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is bearer of" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "bearer_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "bearer of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this apple is bearer of this red color" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "bearer_of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "bearer of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001790", "meta" : { @@ -5508,6 +5586,10 @@ } ] }, "type" : "CLASS" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "type" : "PROPERTY", + "lbl" : "has_obo_namespace" }, { "id" : "http://purl.obolibrary.org/obo/pato#similar_in_magnitude_relative_to", "meta" : { @@ -6932,7 +7014,7 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/creator", + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -6957,19 +7039,6 @@ }, "type" : "CLASS", "lbl" : "obsolete motor performance value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000803", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete tactile response value" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0040024", "meta" : { @@ -6983,15 +7052,28 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, "type" : "CLASS", "lbl" : "bilaterally paired" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000803", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete tactile response value" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000806", "meta" : { @@ -7013,11 +7095,11 @@ "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, "type" : "CLASS", @@ -7043,14 +7125,14 @@ "xrefs" : [ ] }, "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2018-11-19T21:49:07Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, "type" : "CLASS", @@ -7089,7 +7171,7 @@ "xrefs" : [ "NCIT:C3824" ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/creator", + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7185,12 +7267,12 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2018-11-16T22:52:49Z" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, "type" : "CLASS", @@ -7338,11 +7420,11 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2018-05-24T03:56:53Z" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -7372,11 +7454,11 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" - }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2018-05-24T04:10:53Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -7410,19 +7492,6 @@ }, "type" : "CLASS", "lbl" : "obsolete visual placing value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000827", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete visual threshold value" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0040000", "meta" : { @@ -7431,11 +7500,11 @@ "xrefs" : [ "http://medical-dictionary.thefreedictionary.com/heterotaxic" ] }, "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2018-05-21T22:44:38Z" @@ -7443,6 +7512,19 @@ }, "type" : "CLASS", "lbl" : "heterotaxic" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000827", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete visual threshold value" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0040005", "meta" : { @@ -7456,14 +7538,14 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" - }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2018-11-12T22:54:16Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, "type" : "CLASS", @@ -7479,7 +7561,7 @@ "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://purl.org/dc/elements/1.1/date", @@ -7511,12 +7593,12 @@ "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2018-08-02T04:24:52Z" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, "type" : "CLASS", @@ -7532,7 +7614,7 @@ "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://purl.org/dc/elements/1.1/date", @@ -7551,12 +7633,12 @@ "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2018-11-12T18:17:01Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, "type" : "CLASS", @@ -7575,7 +7657,7 @@ "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, @@ -7604,12 +7686,12 @@ "basicPropertyValues" : [ { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2018-11-12T18:15:10Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, "type" : "CLASS", @@ -7679,14 +7761,14 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2018-11-12T18:24:41Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, "type" : "CLASS", @@ -7717,7 +7799,7 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/creator", + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7760,14 +7842,14 @@ "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2018-11-12T18:20:08Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "For example, distinct anteroposterior mobility of palatine relative to mesethmoid." @@ -7809,14 +7891,14 @@ "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2018-11-12T18:21:07Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", "val" : "For example: distinct anteroposterior immobility of palatine relative to mesethmoid." @@ -7834,12 +7916,12 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2018-11-12T18:39:48Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, "type" : "CLASS", @@ -7857,11 +7939,11 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2018-11-12T19:01:51Z" @@ -7894,11 +7976,11 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" - }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2018-11-12T18:31:51Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -7927,14 +8009,14 @@ "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" - }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2018-11-12T18:35:51Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, "type" : "CLASS", @@ -7975,12 +8057,12 @@ "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://purl.org/dc/elements/1.1/date", "val" : "2018-11-12T23:16:17Z" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, "type" : "CLASS", @@ -9819,6 +9901,10 @@ }, "type" : "CLASS", "lbl" : "herniated out of" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", + "type" : "PROPERTY", + "lbl" : "has_obo_format_version" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0015009", "meta" : { @@ -10953,6 +11039,10 @@ }, "type" : "CLASS", "lbl" : "saturated blue" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym", + "type" : "PROPERTY", + "lbl" : "has_broad_synonym" }, { "id" : "http://purl.obolibrary.org/obo/pato#realized_by", "meta" : { @@ -13043,6 +13133,29 @@ }, "type" : "PROPERTY", "lbl" : "has_dividend_quality" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0100001", + "meta" : { + "definition" : { + "val" : "Add as annotation triples in the granting ontology", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Person:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Person:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "term replaced by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "term replaced by" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001248", "meta" : { @@ -13361,6 +13474,10 @@ }, "type" : "CLASS", "lbl" : "light blue" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "type" : "PROPERTY", + "lbl" : "has_alternative_id" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000390", "meta" : { @@ -15005,6 +15122,10 @@ }, "type" : "CLASS", "lbl" : "decreased susceptibility toward" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "type" : "PROPERTY", + "lbl" : "shorthand" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001673", "meta" : { @@ -18351,6 +18472,10 @@ }, "type" : "CLASS", "lbl" : "obsolete learning and memory value" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", + "type" : "PROPERTY", + "lbl" : "has_related_synonym" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000705", "meta" : { @@ -26683,6 +26808,39 @@ } ] }, "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002473", + "meta" : { + "definition" : { + "val" : "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "xrefs" : [ { + "val" : "RO:0002473" + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "composed_primarily_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + } ] + }, + "type" : "PROPERTY", + "lbl" : "composed primarily of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002403", "meta" : { @@ -28163,6 +28321,32 @@ }, "type" : "CLASS", "lbl" : "dysplastic" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000115", + "meta" : { + "definition" : { + "val" : "The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "definition" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "2012-04-05: \nBarry Smith\n\nThe official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.\n\nCan you fix to something like:\n\nA statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.\n\nAlan Ruttenberg\n\nYour proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. \n\nOn the specifics of the proposed definition:\n\nWe don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. \n\nPersonally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. \n\nWe also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. " + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + } ] + }, + "type" : "PROPERTY", + "lbl" : "definition" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001509", "meta" : { @@ -30274,6 +30458,10 @@ }, "type" : "CLASS", "lbl" : "defasciculated" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasDbXref", + "type" : "PROPERTY", + "lbl" : "database_cross_reference" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000620", "meta" : { @@ -31405,6 +31593,10 @@ }, "type" : "CLASS", "lbl" : "back" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#consider", + "type" : "PROPERTY", + "lbl" : "consider" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001902", "meta" : { @@ -32919,6 +33111,10 @@ }, "type" : "CLASS", "lbl" : "obsolete absolute efficiency" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym", + "type" : "PROPERTY", + "lbl" : "has_narrow_synonym" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002392", "meta" : { @@ -42189,6 +42385,26 @@ }, "type" : "CLASS", "lbl" : "scarred" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000231", + "meta" : { + "definition" : { + "val" : "Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Melanie Courtot" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has obsolescence reason" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has obsolescence reason" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000539", "meta" : { @@ -43829,6 +44045,10 @@ }, "type" : "CLASS", "lbl" : "obsolete symmetry value" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", + "type" : "PROPERTY", + "lbl" : "in_subset" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0001828", "meta" : { @@ -45283,6 +45503,38 @@ }, "type" : "CLASS", "lbl" : "obsolete absolute width" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002604", + "meta" : { + "definition" : { + "val" : "x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x).", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002604" + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'anterior end of organism' is-opposite-of 'posterior end of organism'" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'increase in temperature' is-opposite-of 'decrease in temperature'" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_class_level", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "is_opposite_of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "is_opposite_of" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000936", "meta" : { @@ -46495,6 +46747,9 @@ }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" @@ -46670,6 +46925,9 @@ }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", "val" : "this year has part this day (occurrent parthood)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_cyclic", + "val" : "false" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" @@ -46694,9 +46952,15 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "external" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "chebi_ontology" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", "val" : "has part" @@ -48743,6 +49007,10 @@ }, "type" : "CLASS", "lbl" : "paleopolyploid" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym", + "type" : "PROPERTY", + "lbl" : "has_exact_synonym" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002249", "meta" : { @@ -49316,6 +49584,42 @@ }, "type" : "CLASS", "lbl" : "spatial pattern" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002180", + "meta" : { + "definition" : { + "val" : "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "xrefs" : [ { + "val" : "RO:0002180" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_component" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:Componency" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has component" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0002258", "meta" : { @@ -49948,14 +50252,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001629", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001729", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002178", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001729", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005004", "pred" : "is_a", @@ -50284,14 +50588,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045070", "pred" : "is_a", @@ -50372,14 +50676,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002471", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001824", "pred" : "is_a", @@ -50548,14 +50852,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001248", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001380", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045020", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000955" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001380", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000066", "pred" : "is_a", @@ -50632,14 +50936,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001825", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001777", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001054", "pred" : "is_a", @@ -50928,6 +51232,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001948", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002255" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002180", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0055001", "pred" : "is_a", @@ -50972,14 +51280,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001964", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002507", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000998", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000992" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002507", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0025001", "pred" : "is_a", @@ -51072,14 +51380,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001298", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002367", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000384" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002125", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", "pred" : "is_a", @@ -51216,14 +51524,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002541", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001431" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002460", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002331", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001431" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000261", "pred" : "is_a", @@ -51516,14 +51824,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002265", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002185", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002183" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002365", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000383" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002185", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002183" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000646", "pred" : "is_a", @@ -51664,14 +51972,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002271", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0055002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", "pred" : "is_a", @@ -51804,14 +52112,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001243", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002026", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001243", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002228", "pred" : "is_a", @@ -51844,14 +52152,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000300", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001055", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001269", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001055", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002287", "pred" : "is_a", @@ -51880,14 +52188,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002151", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001785" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002201", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002016" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002201", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002326", "pred" : "is_a", @@ -51940,14 +52248,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000297", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002218", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002206", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002218", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002368", "pred" : "is_a", @@ -52024,14 +52332,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001418", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001487", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001372", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001294" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001487", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002322", "pred" : "is_a", @@ -52556,22 +52864,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001440", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001531" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002376", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001855", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002376", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002163", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001645" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001570", "pred" : "is_a", @@ -52636,14 +52944,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002029", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002027" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0040014", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045009", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0040014", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002150", "pred" : "is_a", @@ -53192,14 +53500,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045061", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000921" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001408", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045021", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001544" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001408", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000273", "pred" : "is_a", @@ -53208,14 +53516,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045030", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000125" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001386", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001385" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001335", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001895" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001386", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001385" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002333", "pred" : "is_a", @@ -53573,17 +53881,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000004" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001923", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001884", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001923", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001742", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001153", "pred" : "is_a", @@ -53724,14 +54032,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002172", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001786" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002299", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002078" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002279", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002278" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002299", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002078" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002306", "pred" : "is_a", @@ -53944,14 +54252,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045058", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045037", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001761", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001767" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045037", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001957", "pred" : "is_a", @@ -54016,14 +54324,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002283", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000634", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000626", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000634", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002370", "pred" : "is_a", @@ -54272,14 +54580,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002303", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002110", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002373", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001769" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002110", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002300", "pred" : "is_a", @@ -54364,14 +54672,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002294", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002060", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001293" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001323" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002060", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001293" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045042", "pred" : "is_a", @@ -54464,14 +54772,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015017" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000039", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000161", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002062" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000039", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001835", "pred" : "is_a", @@ -54676,14 +54984,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001333", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045013", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001675", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001678" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0045013", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001229", "pred" : "is_a", @@ -54740,14 +55048,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045054" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001193", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045049", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001193", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001258", "pred" : "is_a", @@ -55052,14 +55360,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000141", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002052", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000021", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002052", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001876", "pred" : "is_a", @@ -55076,14 +55384,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001833", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0005008", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001230", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0005008", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002266" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000276", "pred" : "is_a", @@ -55120,14 +55428,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000623", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001598" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002313", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002424", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002313", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000622", "pred" : "is_a", @@ -55308,14 +55616,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000025", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002345", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001814", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002345", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045034", "pred" : "is_a", @@ -55924,14 +56232,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001430", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", "obj" : "http://purl.obolibrary.org/obo/PATO_0002212" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001430", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001428" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002324", "pred" : "is_a", @@ -56300,6 +56608,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001188", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001746", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001744" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001758", "pred" : "is_a", @@ -56308,10 +56620,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001748", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001746", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001744" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002632", "pred" : "is_a", @@ -56624,14 +56932,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001717", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001674", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001536" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001674", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001480", "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", @@ -56728,14 +57036,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002106", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002099" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002078", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002054", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002078", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002403", "pred" : "is_a", @@ -56804,14 +57112,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000462", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000077" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001744", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001739" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000488", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000077" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000330", "pred" : "is_a", @@ -57076,14 +57384,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002205", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002194", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002226", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002194", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001912", "pred" : "is_a", @@ -57344,14 +57652,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015012", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001547" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001874", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002405", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001874", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001290", "pred" : "is_a", @@ -57412,6 +57720,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001741", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001740" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002473", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001552", "pred" : "is_a", @@ -57660,14 +57972,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001887", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001886" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001754", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002535", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001754", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045084", "pred" : "is_a", @@ -57748,14 +58060,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045060", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002011", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002073", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002011", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001284", "pred" : "is_a", @@ -58156,14 +58468,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001317", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002070", "pred" : "is_a", @@ -58264,14 +58576,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001339", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000627", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000619", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0000627", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001511", "pred" : "is_a", @@ -58301,7 +58613,7 @@ "pred" : "http://www.geneontology.org/formats/oboInOwl#saved-by", "val" : "segerdel" } ], - "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29/pato-simple.json" + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-31/pato-simple.json" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ ], @@ -58348,6 +58660,9 @@ "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ] } ], - "propertyChainAxioms" : [ ] + "propertyChainAxioms" : [ { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0000057" ] + } ] } ] } \ No newline at end of file diff --git a/pato-simple.obo b/pato-simple.obo index 98110b4d..be859fee 100644 --- a/pato-simple.obo +++ b/pato-simple.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: pato/releases/2019-10-29/pato-simple.owl +data-version: pato/releases/2019-10-31/pato-simple.owl date: 07:02:2018 10:27 saved-by: segerdel auto-generated-by: OBO-Edit 2.3.1 @@ -26,6 +26,7 @@ id: PATO:0000001 name: quality alt_id: PATO:0000072 def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" [PATOC:GVG] +synonym: "trait" EXACT [] property_value: IAO:0000589 "quality (PATO)" xsd:string [Term] @@ -1736,7 +1737,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000004 ! mobility disjoint_from: PATO:0000300 ! immobile -property_value: RO:0002604 PATO:0000300 +relationship: is_opposite_of PATO:0000300 ! immobile [Term] id: PATO:0000300 @@ -1746,7 +1747,7 @@ subset: disposition_slim subset: value_slim synonym: "fixed" RELATED [] is_a: PATO:0000004 ! mobility -property_value: RO:0002604 PATO:0000299 +relationship: is_opposite_of PATO:0000299 ! mobile [Term] id: PATO:0000301 @@ -1767,7 +1768,7 @@ synonym: "fast speed" RELATED [] synonym: "high speed" EXACT [] is_a: PATO:0000008 ! speed is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0000304 +relationship: is_opposite_of PATO:0000304 ! decreased speed [Term] id: PATO:0000304 @@ -1778,7 +1779,7 @@ synonym: "slow" EXACT [] synonym: "slow speed" EXACT [] is_a: PATO:0000008 ! speed is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0000303 +relationship: is_opposite_of PATO:0000303 ! increased speed [Term] id: PATO:0000305 @@ -1801,7 +1802,7 @@ name: old def: "An age which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0000011 ! age -property_value: RO:0002604 PATO:0000309 +relationship: is_opposite_of PATO:0000309 ! young [Term] id: PATO:0000309 @@ -1809,7 +1810,7 @@ name: young def: "An age which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0000011 ! age -property_value: RO:0002604 PATO:0000308 +relationship: is_opposite_of PATO:0000308 ! old [Term] id: PATO:0000310 @@ -1927,7 +1928,7 @@ def: "A color brightness which is relatively low." [PATOC:MAH] subset: value_slim synonym: "dark" EXACT [] is_a: PATO:0000016 ! color brightness -property_value: RO:0002604 PATO:0000665 +relationship: is_opposite_of PATO:0000665 ! high brightness [Term] id: PATO:0000328 @@ -1937,7 +1938,7 @@ subset: value_slim synonym: "dull" RELATED [] synonym: "pale" EXACT [] is_a: PATO:0000017 ! color saturation -property_value: RO:0002604 PATO:0001229 +relationship: is_opposite_of PATO:0001229 ! high saturation [Term] id: PATO:0000329 @@ -1955,7 +1956,7 @@ subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0000060 ! spatial pattern -property_value: RO:0002604 PATO:0000440 +relationship: is_opposite_of PATO:0000440 ! regular spatial pattern [Term] id: PATO:0000331 @@ -1963,7 +1964,7 @@ name: discolored def: "A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color." [Dictionary.com:Dictionary.com] subset: value_slim is_a: PATO:0000019 ! color pattern -property_value: RO:0002604 PATO:0000336 +relationship: is_opposite_of PATO:0000336 ! colored [Term] id: PATO:0000333 @@ -1986,7 +1987,7 @@ def: "A color quality inhering in a bearer by virtue of the bearer's having colo subset: value_slim synonym: "pigmented" RELATED [] is_a: PATO:0000014 ! color -property_value: RO:0002604 PATO:0000331 +relationship: is_opposite_of PATO:0000331 ! discolored [Term] id: PATO:0000337 @@ -2036,7 +2037,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0000021 ! compatibility disjoint_from: PATO:0000345 ! incompatible -property_value: RO:0002604 PATO:0000345 +relationship: is_opposite_of PATO:0000345 ! incompatible [Term] id: PATO:0000345 @@ -2046,7 +2047,7 @@ subset: disposition_slim subset: relational_slim subset: value_slim is_a: PATO:0000021 ! compatibility -property_value: RO:0002604 PATO:0000344 +relationship: is_opposite_of PATO:0000344 ! compatible [Term] id: PATO:0000346 @@ -2149,7 +2150,7 @@ name: down def: "A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction -property_value: RO:0002604 PATO:0000370 +relationship: is_opposite_of PATO:0000370 ! up [Term] id: PATO:0000366 @@ -2181,7 +2182,7 @@ name: up def: "A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction -property_value: RO:0002604 PATO:0000365 +relationship: is_opposite_of PATO:0000365 ! down [Term] id: PATO:0000371 @@ -2207,7 +2208,7 @@ subset: value_slim synonym: "long distance" RELATED [] is_a: PATO:0000040 ! distance is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0000375 +relationship: is_opposite_of PATO:0000375 ! decreased distance [Term] id: PATO:0000375 @@ -2218,7 +2219,7 @@ subset: value_slim synonym: "short distance" RELATED [] is_a: PATO:0000040 ! distance is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0000374 +relationship: is_opposite_of PATO:0000374 ! increased distance [Term] id: PATO:0000376 @@ -2250,7 +2251,7 @@ synonym: "frequent" RELATED [] synonym: "high frequency" EXACT [] is_a: PATO:0000044 ! frequency is_a: PATO:0000912 ! increased rate -property_value: RO:0002604 PATO:0000381 +relationship: is_opposite_of PATO:0000381 ! decreased frequency [Term] id: PATO:0000381 @@ -2262,7 +2263,7 @@ synonym: "infrequent" RELATED [] synonym: "low frequency" EXACT [] is_a: PATO:0000044 ! frequency is_a: PATO:0000911 ! decreased rate -property_value: RO:0002604 PATO:0000380 +relationship: is_opposite_of PATO:0000380 ! increased frequency [Term] id: PATO:0000382 @@ -2302,7 +2303,7 @@ synonym: "impenetrable" RELATED [] synonym: "tough" RELATED [] is_a: PATO:0000048 ! hardness is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0000387 +relationship: is_opposite_of PATO:0000387 ! soft [Term] id: PATO:0000387 @@ -2313,7 +2314,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0000048 ! hardness is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0000386 +relationship: is_opposite_of PATO:0000386 ! hard [Term] id: PATO:0000388 @@ -2328,7 +2329,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0001309 ! duration -property_value: RO:0002604 PATO:0001863 +relationship: is_opposite_of PATO:0001863 ! chronic [Term] id: PATO:0000390 @@ -2414,7 +2415,7 @@ synonym: "ramified" EXACT [] synonym: "ramiform" EXACT [] is_a: PATO:0002009 ! branchiness disjoint_from: PATO:0000414 ! unbranched -property_value: RO:0002604 PATO:0000414 +relationship: is_opposite_of PATO:0000414 ! unbranched [Term] id: PATO:0000403 @@ -2439,7 +2440,7 @@ synonym: "helicoidal" RELATED [] synonym: "helix-shaped" RELATED [] synonym: "spiral" EXACT [] is_a: PATO:0001794 ! coiling -property_value: RO:0002604 PATO:0000415 +relationship: is_opposite_of PATO:0000415 ! uncoiled [Term] id: PATO:0000405 @@ -2518,7 +2519,7 @@ subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0002009 ! branchiness -property_value: RO:0002604 PATO:0000402 +relationship: is_opposite_of PATO:0000402 ! branched [Term] id: PATO:0000415 @@ -2528,7 +2529,7 @@ subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0001794 ! coiling -property_value: RO:0002604 PATO:0000404 +relationship: is_opposite_of PATO:0000404 ! coiled [Term] id: PATO:0000416 @@ -2557,7 +2558,7 @@ def: "A nutritional quality inhering in a bearer by virtue of the bearer's inabi subset: disposition_slim subset: value_slim is_a: PATO:0000056 ! trophic quality -property_value: RO:0002604 PATO:0000423 +relationship: is_opposite_of PATO:0000423 ! prototrophic [Term] id: PATO:0000423 @@ -2566,7 +2567,7 @@ def: "A nutritional quality inhering in a bearer by virtue of the bearer's abili subset: disposition_slim subset: value_slim is_a: PATO:0000056 ! trophic quality -property_value: RO:0002604 PATO:0000422 +relationship: is_opposite_of PATO:0000422 ! auxotrophic [Term] id: PATO:0000424 @@ -2587,7 +2588,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence -property_value: RO:0002604 PATO:0000428 +relationship: is_opposite_of PATO:0000428 ! sporadic [Term] id: PATO:0000428 @@ -2597,7 +2598,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence -property_value: RO:0002604 PATO:0000427 +relationship: is_opposite_of PATO:0000427 ! recurrent [Term] id: PATO:0000430 @@ -2651,7 +2652,7 @@ subset: value_slim synonym: "constant" RELATED [] synonym: "uniform" EXACT [] is_a: PATO:0001303 ! variability -property_value: RO:0002604 PATO:0001227 +relationship: is_opposite_of PATO:0001227 ! variant [Term] id: PATO:0000439 @@ -2666,7 +2667,7 @@ subset: mpath_slim subset: relational_slim subset: value_slim is_a: PATO:0000060 ! spatial pattern -property_value: RO:0002604 PATO:0000330 +relationship: is_opposite_of PATO:0000330 ! irregular spatial pattern [Term] id: PATO:0000441 @@ -2795,7 +2796,7 @@ synonym: "atypia" RELATED [] synonym: "atypical" RELATED [] synonym: "defective" RELATED [] is_a: PATO:0000069 ! deviation(from_normal) -property_value: RO:0002604 PATO:0000461 +relationship: is_opposite_of PATO:0000461 ! normal [Term] id: PATO:0000461 @@ -2806,7 +2807,7 @@ subset: mpath_slim subset: value_slim synonym: "average" RELATED [] is_a: PATO:0000068 ! qualitative -property_value: RO:0002604 PATO:0000460 +relationship: is_opposite_of PATO:0000460 ! abnormal [Term] id: PATO:0000462 @@ -2821,9 +2822,9 @@ synonym: "absence" EXACT [] synonym: "absent from organism" EXACT [] is_a: PATO:0000070 ! amount disjoint_from: PATO:0000467 ! present +relationship: is_opposite_of PATO:0000467 ! present relationship: reciprocal_of PATO:0001558 ! lacking processual parts relationship: reciprocal_of PATO:0002000 ! lacks all parts of type -property_value: RO:0002604 PATO:0000467 [Term] id: PATO:0000463 @@ -2833,7 +2834,7 @@ subset: mpath_slim subset: value_slim synonym: "distinct" RELATED [] is_a: PATO:0001998 ! conspicuousness -property_value: RO:0002604 PATO:0000464 +relationship: is_opposite_of PATO:0000464 ! inconspicuous [Term] id: PATO:0000464 @@ -2843,7 +2844,7 @@ subset: mpath_slim subset: value_slim synonym: "faint" RELATED [] is_a: PATO:0001998 ! conspicuousness -property_value: RO:0002604 PATO:0000463 +relationship: is_opposite_of PATO:0000463 ! conspicuous [Term] id: PATO:0000465 @@ -2863,7 +2864,7 @@ subset: absent_slim subset: value_slim synonym: "present in organism" RELATED [] is_a: PATO:0000070 ! amount -property_value: RO:0002604 PATO:0000462 +relationship: is_opposite_of PATO:0000462 ! absent [Term] id: PATO:0000469 @@ -2884,7 +2885,7 @@ synonym: "present in greater numbers in organism" EXACT [] synonym: "supernumerary" EXACT [] is_a: PATO:0000467 ! present is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0001997 +relationship: is_opposite_of PATO:0001997 ! decreased amount [Term] id: PATO:0000471 @@ -2976,7 +2977,7 @@ subset: value_slim synonym: "responsive" EXACT [] is_a: PATO:0000077 ! response to disjoint_from: PATO:0000488 ! unresponsive to -property_value: RO:0002604 PATO:0000488 +relationship: is_opposite_of PATO:0000488 ! unresponsive to [Term] id: PATO:0000488 @@ -2987,7 +2988,7 @@ subset: relational_slim subset: value_slim synonym: "unresponsive" EXACT [] is_a: PATO:0000077 ! response to -property_value: RO:0002604 PATO:0000487 +relationship: is_opposite_of PATO:0000487 ! responsive to [Term] id: PATO:0000489 @@ -3048,7 +3049,7 @@ synonym: "prolonged period" RELATED [] synonym: "slow time" RELATED [] is_a: PATO:0001309 ! duration is_a: PATO:0002304 ! increased process quality -property_value: RO:0002604 PATO:0000499 +relationship: is_opposite_of PATO:0000499 ! decreased duration [Term] id: PATO:0000499 @@ -3063,7 +3064,7 @@ synonym: "low period" EXACT [] synonym: "shortened period" EXACT [] is_a: PATO:0001309 ! duration is_a: PATO:0002302 ! decreased process quality -property_value: RO:0002604 PATO:0000498 +relationship: is_opposite_of PATO:0000498 ! increased duration [Term] id: PATO:0000500 @@ -3100,7 +3101,7 @@ name: arrhythmic def: "A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm." [PATOC:GVG] subset: value_slim is_a: PATO:0000078 ! rhythm quality -property_value: RO:0002604 PATO:0000505 +relationship: is_opposite_of PATO:0000505 ! rhythmic [Term] id: PATO:0000505 @@ -3108,7 +3109,7 @@ name: rhythmic def: "A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm." [PATOC:GVG] subset: value_slim is_a: PATO:0000078 ! rhythm quality -property_value: RO:0002604 PATO:0000504 +relationship: is_opposite_of PATO:0000504 ! arrhythmic [Term] id: PATO:0000506 @@ -3155,7 +3156,7 @@ subset: value_slim synonym: "insensitive" EXACT [] synonym: "resistant" RELATED [] is_a: PATO:0000085 ! sensitivity toward -property_value: RO:0002604 PATO:0000516 +relationship: is_opposite_of PATO:0000516 ! sensitive toward [Term] id: PATO:0000514 @@ -3182,7 +3183,7 @@ subset: relational_slim subset: value_slim synonym: "sensitive" EXACT [] is_a: PATO:0000085 ! sensitivity toward -property_value: RO:0002604 PATO:0000513 +relationship: is_opposite_of PATO:0000513 ! insensitive toward [Term] id: PATO:0000517 @@ -3338,7 +3339,7 @@ subset: value_slim synonym: "photoresistant" RELATED [] is_a: PATO:0000927 ! photosensitivity disjoint_from: PATO:0000547 ! photosensitive -property_value: RO:0002604 PATO:0000547 +relationship: is_opposite_of PATO:0000547 ! photosensitive [Term] id: PATO:0000547 @@ -3347,7 +3348,7 @@ def: "A photosensitivity quality inhering in a bearer by virtue of the bearer's subset: disposition_slim subset: value_slim is_a: PATO:0000927 ! photosensitivity -property_value: RO:0002604 PATO:0000546 +relationship: is_opposite_of PATO:0000546 ! photoinsensitive [Term] id: PATO:0000548 @@ -3464,7 +3465,7 @@ subset: value_slim synonym: "short" RELATED [] is_a: PATO:0000119 ! height is_a: PATO:0000587 ! decreased size -property_value: RO:0002604 PATO:0000570 +relationship: is_opposite_of PATO:0000570 ! increased height [Term] id: PATO:0000570 @@ -3474,7 +3475,7 @@ subset: value_slim synonym: "tall" RELATED [] is_a: PATO:0000119 ! height is_a: PATO:0000586 ! increased size -property_value: RO:0002604 PATO:0000569 +relationship: is_opposite_of PATO:0000569 ! decreased height [Term] id: PATO:0000571 @@ -3494,7 +3495,7 @@ subset: value_slim synonym: "long" EXACT [] is_a: PATO:0000122 ! length is_a: PATO:0000586 ! increased size -property_value: RO:0002604 PATO:0000574 +relationship: is_opposite_of PATO:0000574 ! decreased length [Term] id: PATO:0000574 @@ -3506,7 +3507,7 @@ synonym: "shortened" RELATED [] synonym: "stubby" RELATED [] is_a: PATO:0000122 ! length is_a: PATO:0000587 ! decreased size -property_value: RO:0002604 PATO:0000573 +relationship: is_opposite_of PATO:0000573 ! increased length [Term] id: PATO:0000575 @@ -3542,7 +3543,7 @@ synonym: "heavy" EXACT [] synonym: "high weight" EXACT [] is_a: PATO:0000128 ! weight is_a: PATO:0002245 ! increased force -property_value: RO:0002604 PATO:0000583 +relationship: is_opposite_of PATO:0000583 ! decreased weight [Term] id: PATO:0000583 @@ -3553,7 +3554,7 @@ synonym: "light weight" EXACT [] synonym: "low weight" EXACT [] is_a: PATO:0000128 ! weight is_a: PATO:0002246 ! decreased force -property_value: RO:0002604 PATO:0000582 +relationship: is_opposite_of PATO:0000582 ! increased weight [Term] id: PATO:0000584 @@ -3563,7 +3564,7 @@ subset: mpath_slim subset: value_slim synonym: "hypertrophy" NARROW [] is_a: PATO:0000595 ! increased volume -property_value: RO:0002604 PATO:0000585 +relationship: is_opposite_of PATO:0000585 ! hypotrophic [Term] id: PATO:0000585 @@ -3574,7 +3575,7 @@ subset: mpath_slim subset: value_slim synonym: "shrunken" EXACT [] is_a: PATO:0000596 ! decreased volume -property_value: RO:0002604 PATO:0000584 +relationship: is_opposite_of PATO:0000584 ! hypertrophic [Term] id: PATO:0000586 @@ -3589,7 +3590,7 @@ synonym: "great" RELATED [] synonym: "large" RELATED [] is_a: PATO:0000117 ! size is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0000587 +relationship: is_opposite_of PATO:0000587 ! decreased size [Term] id: PATO:0000587 @@ -3603,7 +3604,7 @@ synonym: "tiny" RELATED [] synonym: "underdeveloped" NARROW [] is_a: PATO:0000117 ! size is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0000586 +relationship: is_opposite_of PATO:0000586 ! increased size [Term] id: PATO:0000588 @@ -3635,7 +3636,7 @@ synonym: "thick" RELATED [] synonym: "thickened" EXACT [] is_a: PATO:0000586 ! increased size is_a: PATO:0000915 ! thickness -property_value: RO:0002604 PATO:0000592 +relationship: is_opposite_of PATO:0000592 ! decreased thickness [Term] id: PATO:0000592 @@ -3648,7 +3649,7 @@ synonym: "slender" RELATED [] synonym: "thin" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0000915 ! thickness -property_value: RO:0002604 PATO:0000591 +relationship: is_opposite_of PATO:0000591 ! increased thickness [Term] id: PATO:0000593 @@ -3670,7 +3671,7 @@ synonym: "high volume" EXACT [] synonym: "large volume" RELATED [] is_a: PATO:0000586 ! increased size is_a: PATO:0000918 ! volume -property_value: RO:0002604 PATO:0000596 +relationship: is_opposite_of PATO:0000596 ! decreased volume [Term] id: PATO:0000596 @@ -3682,7 +3683,7 @@ synonym: "low volume" EXACT [] synonym: "small volume" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0000918 ! volume -property_value: RO:0002604 PATO:0000595 +relationship: is_opposite_of PATO:0000595 ! increased volume [Term] id: PATO:0000597 @@ -3702,7 +3703,7 @@ subset: value_slim synonym: "narrow" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0000921 ! width -property_value: RO:0002604 PATO:0000600 +relationship: is_opposite_of PATO:0000600 ! increased width [Term] id: PATO:0000600 @@ -3714,7 +3715,7 @@ synonym: "wide" RELATED [] synonym: "wide/broad" RELATED [] is_a: PATO:0000586 ! increased size is_a: PATO:0000921 ! width -property_value: RO:0002604 PATO:0000599 +relationship: is_opposite_of PATO:0000599 ! decreased width [Term] id: PATO:0000601 @@ -3761,7 +3762,7 @@ subset: value_slim synonym: "blocked" RELATED [] is_a: PATO:0000136 ! closure disjoint_from: PATO:0000610 ! open -property_value: RO:0002604 PATO:0000610 +relationship: is_opposite_of PATO:0000610 ! open [Term] id: PATO:0000609 @@ -3776,7 +3777,7 @@ name: open def: "A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view." [answers.com:answers.com] subset: value_slim is_a: PATO:0000136 ! closure -property_value: RO:0002604 PATO:0000608 +relationship: is_opposite_of PATO:0000608 ! closed [Term] id: PATO:0000611 @@ -3794,7 +3795,7 @@ name: disoriented def: "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation." [PATOC:GVG] subset: value_slim is_a: PATO:0000330 ! irregular spatial pattern -property_value: RO:0002604 PATO:0000614 +relationship: is_opposite_of PATO:0000614 ! oriented [Term] id: PATO:0000614 @@ -3802,7 +3803,7 @@ name: oriented def: "A pattern where all the repeated elements are oriented in the same direction." [PATOC:MAH] subset: value_slim is_a: PATO:0000440 ! regular spatial pattern -property_value: RO:0002604 PATO:0000613 +relationship: is_opposite_of PATO:0000613 ! disoriented [Term] id: PATO:0000615 @@ -3845,7 +3846,7 @@ name: crowded def: "A positional quality inhering in a bearer by virtue of the bearer's being overfilled." [WordNet:WordNet] subset: value_slim is_a: PATO:0000140 ! position -property_value: RO:0002604 PATO:0000633 +relationship: is_opposite_of PATO:0000633 ! uncrowded [Term] id: PATO:0000620 @@ -3963,7 +3964,7 @@ name: uncrowded def: "A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled." [PATOC:GVG] subset: value_slim is_a: PATO:0000060 ! spatial pattern -property_value: RO:0002604 PATO:0000619 +relationship: is_opposite_of PATO:0000619 ! crowded [Term] id: PATO:0000634 @@ -4014,7 +4015,7 @@ is_a: PATO:0002037 ! degeneration disjoint_from: PATO:0001623 ! atrophied disjoint_from: PATO:0002038 ! non-degenerate relationship: has_part PATO:0000585 ! hypotrophic -property_value: RO:0002604 PATO:0002038 +relationship: is_opposite_of PATO:0002038 ! non-degenerate [Term] id: PATO:0000640 @@ -4043,7 +4044,7 @@ synonym: "fused to" EXACT [] synonym: "joined with" RELATED [] synonym: "merged with" RELATED [] is_a: PATO:0000141 ! structure -property_value: RO:0002604 PATO:0000651 +relationship: is_opposite_of PATO:0000651 ! unfused from [Term] id: PATO:0000643 @@ -4063,7 +4064,7 @@ subset: value_slim synonym: "hyperplasia" EXACT [] synonym: "overdeveloped" RELATED [] is_a: PATO:0000586 ! increased size -property_value: RO:0002604 PATO:0000645 +relationship: is_opposite_of PATO:0000645 ! hypoplastic [Term] id: PATO:0000645 @@ -4076,7 +4077,7 @@ synonym: "hypoplasia" EXACT [] synonym: "underdeveloped" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0002290 ! aplastic/hypoplastic -property_value: RO:0002604 PATO:0000644 +relationship: is_opposite_of PATO:0000644 ! hyperplastic [Term] id: PATO:0000646 @@ -4111,7 +4112,7 @@ subset: relational_slim subset: value_slim synonym: "unfused" EXACT [] is_a: PATO:0000141 ! structure -property_value: RO:0002604 PATO:0000642 +relationship: is_opposite_of PATO:0000642 ! fused with [Term] id: PATO:0000652 @@ -4185,7 +4186,7 @@ def: "A color brightness which is relatively high." [PATOC:MAH] subset: value_slim synonym: "light" EXACT [] is_a: PATO:0000016 ! color brightness -property_value: RO:0002604 PATO:0000327 +relationship: is_opposite_of PATO:0000327 ! low brightness [Term] id: PATO:0000666 @@ -4293,7 +4294,7 @@ name: asynchronous def: "A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase." [WordNet:WordNet] subset: value_slim is_a: PATO:0000057 ! occurrence -property_value: RO:0002604 PATO:0000695 +relationship: is_opposite_of PATO:0000695 ! synchronous [Term] id: PATO:0000689 @@ -4303,7 +4304,7 @@ def: "A quality of a single process inhering in a bearer by virtue of the bearer subset: value_slim synonym: "uninterrupted" EXACT [] is_a: PATO:0000057 ! occurrence -property_value: RO:0002604 PATO:0000690 +relationship: is_opposite_of PATO:0000690 ! discontinuous [Term] id: PATO:0000690 @@ -4314,7 +4315,7 @@ subset: value_slim synonym: "intermittent" RELATED [] synonym: "interrupted" EXACT [] is_a: PATO:0000057 ! occurrence -property_value: RO:0002604 PATO:0000689 +relationship: is_opposite_of PATO:0000689 ! continuous [Term] id: PATO:0000692 @@ -4346,7 +4347,7 @@ name: synchronous def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase." [PATOC:GVG] subset: value_slim is_a: PATO:0000057 ! occurrence -property_value: RO:0002604 PATO:0000688 +relationship: is_opposite_of PATO:0000688 ! asynchronous [Term] id: PATO:0000696 @@ -4377,7 +4378,7 @@ subset: mpath_slim subset: value_slim synonym: "coarse" EXACT [] is_a: PATO:0000150 ! texture -property_value: RO:0002604 PATO:0000701 +relationship: is_opposite_of PATO:0000701 ! smooth [Term] id: PATO:0000701 @@ -4386,7 +4387,7 @@ def: "A texture quality inhering in a bearer by virtue of the bearer's processin subset: mpath_slim subset: value_slim is_a: PATO:0000150 ! texture -property_value: RO:0002604 PATO:0000700 +relationship: is_opposite_of PATO:0000700 ! rough [Term] id: PATO:0000702 @@ -4419,7 +4420,7 @@ subset: value_slim synonym: "high threshold" EXACT [] is_a: PATO:0000152 ! threshold is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0000708 +relationship: is_opposite_of PATO:0000708 ! decreased threshold [Term] id: PATO:0000708 @@ -4432,7 +4433,7 @@ subset: value_slim synonym: "low threshold" EXACT [] is_a: PATO:0000152 ! threshold is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0000706 +relationship: is_opposite_of PATO:0000706 ! increased threshold [Term] id: PATO:0000710 @@ -4672,7 +4673,7 @@ def: "A balance quality inhering in a bearer by virtue of the bearer's having ba subset: value_slim is_a: PATO:0000185 ! balance disjoint_from: PATO:0000758 ! unbalanced -property_value: RO:0002604 PATO:0000758 +relationship: is_opposite_of PATO:0000758 ! unbalanced [Term] id: PATO:0000758 @@ -4680,7 +4681,7 @@ name: unbalanced def: "A balance quality inhering in a bearer by virtue of the bearer's lacking balance." [PATOC:GVG] subset: value_slim is_a: PATO:0000185 ! balance -property_value: RO:0002604 PATO:0000757 +relationship: is_opposite_of PATO:0000757 ! balanced [Term] id: PATO:0000759 @@ -4699,7 +4700,7 @@ subset: value_slim synonym: "hyperactive" EXACT [] is_a: PATO:0001707 ! behavioural active is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0000761 +relationship: is_opposite_of PATO:0000761 ! decreased behavioural activity [Term] id: PATO:0000761 @@ -4709,7 +4710,7 @@ subset: value_slim synonym: "hypoactive" EXACT [] is_a: PATO:0001707 ! behavioural active is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0000760 +relationship: is_opposite_of PATO:0000760 ! increased behavioural activity [Term] id: PATO:0000762 @@ -4774,7 +4775,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000188 ! coordination disjoint_from: PATO:0000770 ! uncoordinated -property_value: RO:0002604 PATO:0000770 +relationship: is_opposite_of PATO:0000770 ! uncoordinated [Term] id: PATO:0000770 @@ -4783,7 +4784,7 @@ def: "A coordination quality of inhering in a bearer by virtue of the bearer's l subset: disposition_slim subset: value_slim is_a: PATO:0000188 ! coordination -property_value: RO:0002604 PATO:0000769 +relationship: is_opposite_of PATO:0000769 ! coordinated [Term] id: PATO:0000771 @@ -5391,7 +5392,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000277 ! female fertility disjoint_from: PATO:0000892 ! female sterile -property_value: RO:0002604 PATO:0000892 +relationship: is_opposite_of PATO:0000892 ! female sterile [Term] id: PATO:0000889 @@ -5407,7 +5408,7 @@ subset: value_slim synonym: "male infertile" RELATED [] is_a: PATO:0000956 ! sterile disjoint_from: PATO:0000891 ! male fertile -property_value: RO:0002604 PATO:0000891 +relationship: is_opposite_of PATO:0000891 ! male fertile [Term] id: PATO:0000891 @@ -5416,7 +5417,7 @@ def: "A male fertility quality inhering in a male by virtue of the bearer's bein subset: disposition_slim subset: value_slim is_a: PATO:0000279 ! male fertility -property_value: RO:0002604 PATO:0000890 +relationship: is_opposite_of PATO:0000890 ! male sterile [Term] id: PATO:0000892 @@ -5426,7 +5427,7 @@ subset: disposition_slim subset: value_slim synonym: "female infertile" RELATED [] is_a: PATO:0000956 ! sterile -property_value: RO:0002604 PATO:0000888 +relationship: is_opposite_of PATO:0000888 ! female fertile [Term] id: PATO:0000893 @@ -5531,7 +5532,7 @@ subset: value_slim synonym: "slow rate" EXACT [] is_a: PATO:0000161 ! rate is_a: PATO:0002302 ! decreased process quality -property_value: RO:0002604 PATO:0000912 +relationship: is_opposite_of PATO:0000912 ! increased rate [Term] id: PATO:0000912 @@ -5543,7 +5544,7 @@ synonym: "fast rate" EXACT [] synonym: "high rate" EXACT [] is_a: PATO:0000161 ! rate is_a: PATO:0002304 ! increased process quality -property_value: RO:0002604 PATO:0000911 +relationship: is_opposite_of PATO:0000911 ! decreased rate [Term] id: PATO:0000913 @@ -5691,7 +5692,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0002264 ! organization quality disjoint_from: PATO:0000938 ! organized -property_value: RO:0002604 PATO:0000938 +relationship: is_opposite_of PATO:0000938 ! organized [Term] id: PATO:0000938 @@ -5700,7 +5701,7 @@ def: "A structural quality inhering in a bearer by virtue of the bearer's exhibi subset: mpath_slim subset: value_slim is_a: PATO:0002264 ! organization quality -property_value: RO:0002604 PATO:0000937 +relationship: is_opposite_of PATO:0000937 ! disorganized [Term] id: PATO:0000939 @@ -5831,7 +5832,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000274 ! fertility disjoint_from: PATO:0000956 ! sterile -property_value: RO:0002604 PATO:0000956 +relationship: is_opposite_of PATO:0000956 ! sterile [Term] id: PATO:0000956 @@ -5840,7 +5841,7 @@ def: "A fertility quality inhering in a bearer by virtue of the bearer's being i subset: disposition_slim subset: value_slim is_a: PATO:0000274 ! fertility -property_value: RO:0002604 PATO:0000955 +relationship: is_opposite_of PATO:0000955 ! fertile [Term] id: PATO:0000957 @@ -5884,7 +5885,7 @@ synonym: "clouding" RELATED [] synonym: "cloudy" RELATED [] synonym: "non-transparent" EXACT [] is_a: PATO:0000957 ! opacity -property_value: RO:0002604 PATO:0000964 +relationship: is_opposite_of PATO:0000964 ! transparent [Term] id: PATO:0000964 @@ -5895,7 +5896,7 @@ subset: value_slim synonym: "clear" EXACT [] synonym: "hyaline" EXACT [] is_a: PATO:0000957 ! opacity -property_value: RO:0002604 PATO:0000963 +relationship: is_opposite_of PATO:0000963 ! opaque [Term] id: PATO:0000965 @@ -6016,7 +6017,7 @@ subset: value_slim synonym: "porous" RELATED [] is_a: PATO:0000970 ! permeability disjoint_from: PATO:0000983 ! impermeable -property_value: RO:0002604 PATO:0000983 +relationship: is_opposite_of PATO:0000983 ! impermeable [Term] id: PATO:0000983 @@ -6025,7 +6026,7 @@ def: "A permeability quality inhering in a bearer by virtue of the bearer's bein subset: disposition_slim subset: value_slim is_a: PATO:0000970 ! permeability -property_value: RO:0002604 PATO:0000982 +relationship: is_opposite_of PATO:0000982 ! permeable [Term] id: PATO:0000984 @@ -6035,7 +6036,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0000973 ! porosity disjoint_from: PATO:0000985 ! non-porous -property_value: RO:0002604 PATO:0000985 +relationship: is_opposite_of PATO:0000985 ! non-porous [Term] id: PATO:0000985 @@ -6044,7 +6045,7 @@ def: "A porosity quality inhering in a bearer by virtue of the bearer's being in subset: disposition_slim subset: value_slim is_a: PATO:0000973 ! porosity -property_value: RO:0002604 PATO:0000984 +relationship: is_opposite_of PATO:0000984 ! porous [Term] id: PATO:0000986 @@ -6392,7 +6393,7 @@ subset: disposition_slim subset: relational_slim synonym: "susceptibility" EXACT [] is_a: PATO:0000085 ! sensitivity toward -property_value: RO:0002604 PATO:0001046 +relationship: is_opposite_of PATO:0001046 ! resistance to [Term] id: PATO:0001044 @@ -6414,7 +6415,7 @@ subset: relational_slim subset: scalar_slim synonym: "resistance" EXACT [] is_a: PATO:0001995 ! organismal quality -property_value: RO:0002604 PATO:0001043 +relationship: is_opposite_of PATO:0001043 ! susceptibility toward [Term] id: PATO:0001047 @@ -6966,7 +6967,7 @@ subset: value_slim synonym: "susceptible" EXACT [] is_a: PATO:0001043 ! susceptibility toward disjoint_from: PATO:0001153 ! insusceptible toward -property_value: RO:0002604 PATO:0001153 +relationship: is_opposite_of PATO:0001153 ! insusceptible toward [Term] id: PATO:0001153 @@ -6977,7 +6978,7 @@ subset: relational_slim subset: value_slim synonym: "insusceptible" EXACT [] is_a: PATO:0001043 ! susceptibility toward -property_value: RO:0002604 PATO:0001152 +relationship: is_opposite_of PATO:0001152 ! susceptible toward [Term] id: PATO:0001154 @@ -6985,7 +6986,7 @@ name: elongated def: "A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width." [WordNet:WordNet] subset: value_slim is_a: PATO:0000052 ! shape -property_value: RO:0002604 PATO:0002364 +relationship: is_opposite_of PATO:0002364 ! shortened [Term] id: PATO:0001155 @@ -7037,7 +7038,7 @@ subset: value_slim synonym: "high concentration" EXACT [] is_a: PATO:0001159 ! concentrated is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001163 +relationship: is_opposite_of PATO:0001163 ! decreased concentration [Term] id: PATO:0001163 @@ -7048,7 +7049,7 @@ subset: value_slim synonym: "low concentration" EXACT [] is_a: PATO:0001159 ! concentrated is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001162 +relationship: is_opposite_of PATO:0001162 ! increased concentration [Term] id: PATO:0001164 @@ -7075,7 +7076,7 @@ def: "A structural quality inhering in a bearer by virtue of the bearer being ha subset: value_slim is_a: PATO:0001020 ! damage disjoint_from: PATO:0001168 ! undamaged -property_value: RO:0002604 PATO:0001168 +relationship: is_opposite_of PATO:0001168 ! undamaged [Term] id: PATO:0001168 @@ -7083,7 +7084,7 @@ name: undamaged def: "A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled." [WordNet:WordNet] subset: value_slim is_a: PATO:0001020 ! damage -property_value: RO:0002604 PATO:0001167 +relationship: is_opposite_of PATO:0001167 ! damaged [Term] id: PATO:0001170 @@ -7099,7 +7100,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0001031 ! elasticity disjoint_from: PATO:0001172 ! inelastic -property_value: RO:0002604 PATO:0001172 +relationship: is_opposite_of PATO:0001172 ! inelastic [Term] id: PATO:0001172 @@ -7109,7 +7110,7 @@ subset: disposition_slim subset: mpath_slim subset: value_slim is_a: PATO:0001031 ! elasticity -property_value: RO:0002604 PATO:0001171 +relationship: is_opposite_of PATO:0001171 ! elastic [Term] id: PATO:0001173 @@ -7240,7 +7241,7 @@ synonym: "hyperresponsive" EXACT [] synonym: "increased responsivity" EXACT [] is_a: PATO:0000487 ! responsive to is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001194 +relationship: is_opposite_of PATO:0001194 ! hyporesponsive to [Term] id: PATO:0001193 @@ -7263,7 +7264,7 @@ synonym: "decreased responsivity" EXACT [] synonym: "hyporesponsive" EXACT [] is_a: PATO:0000487 ! responsive to is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001192 +relationship: is_opposite_of PATO:0001192 ! hyperresponsive to [Term] id: PATO:0001195 @@ -7345,7 +7346,7 @@ subset: mpath_slim subset: value_slim synonym: "serrate" EXACT [] is_a: PATO:0001976 ! serration -property_value: RO:0002604 PATO:0001975 +relationship: is_opposite_of PATO:0001975 ! unserrated [Term] id: PATO:0001207 @@ -7453,7 +7454,7 @@ subset: relational_slim subset: value_slim synonym: "variable" EXACT [] is_a: PATO:0001303 ! variability -property_value: RO:0002604 PATO:0000438 +relationship: is_opposite_of PATO:0000438 ! invariant [Term] id: PATO:0001228 @@ -7468,7 +7469,7 @@ subset: value_slim synonym: "bright" EXACT [] synonym: "vivid" RELATED [] is_a: PATO:0000017 ! color saturation -property_value: RO:0002604 PATO:0000328 +relationship: is_opposite_of PATO:0000328 ! low saturation [Term] id: PATO:0001230 @@ -7498,7 +7499,7 @@ synonym: "dorsal" EXACT [] synonym: "posterior_to (human torso)" EXACT [] synonym: "superior_to (human head)" EXACT [] is_a: PATO:0000140 ! position -property_value: RO:0002604 PATO:0001234 +relationship: is_opposite_of PATO:0001234 ! distal to [Term] id: PATO:0001234 @@ -7509,7 +7510,7 @@ subset: relational_slim subset: value_slim synonym: "distal" EXACT [] is_a: PATO:0000140 ! position -property_value: RO:0002604 PATO:0001233 +relationship: is_opposite_of PATO:0001233 ! dorsal to [Term] id: PATO:0001235 @@ -8044,7 +8045,7 @@ synonym: "high temperature" EXACT [] synonym: "hot" EXACT [] is_a: PATO:0000146 ! temperature is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001306 +relationship: is_opposite_of PATO:0001306 ! decreased temperature [Term] id: PATO:0001306 @@ -8056,7 +8057,7 @@ synonym: "cold" EXACT [] synonym: "low temperature" EXACT [] is_a: PATO:0000146 ! temperature is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001305 +relationship: is_opposite_of PATO:0001305 ! increased temperature [Term] id: PATO:0001307 @@ -8066,7 +8067,7 @@ subset: value_slim synonym: "low variability of temperature" EXACT [] is_a: PATO:0001314 ! variant temperature is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0001308 +relationship: is_opposite_of PATO:0001308 ! increased variability of temperature [Term] id: PATO:0001308 @@ -8076,7 +8077,7 @@ subset: value_slim synonym: "high variability of temperature" EXACT [] is_a: PATO:0001314 ! variant temperature is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0001307 +relationship: is_opposite_of PATO:0001307 ! decreased variability of temperature [Term] id: PATO:0001309 @@ -8104,7 +8105,7 @@ def: "A duration of temperature which is lesser relative to the normal or averag subset: value_slim is_a: PATO:0000499 ! decreased duration is_a: PATO:0001310 ! duration of temperature -property_value: RO:0002604 PATO:0001312 +relationship: is_opposite_of PATO:0001312 ! increased duration of temperature [Term] id: PATO:0001312 @@ -8114,7 +8115,7 @@ subset: value_slim synonym: "high duration of temperature" EXACT [] is_a: PATO:0000498 ! increased duration is_a: PATO:0001310 ! duration of temperature -property_value: RO:0002604 PATO:0001311 +relationship: is_opposite_of PATO:0001311 ! decreased duration of temperature [Term] id: PATO:0001313 @@ -8122,7 +8123,7 @@ name: invariant temperature def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature." [PATO:GVG] subset: relational_slim is_a: PATO:0001304 ! variability of temperature -property_value: RO:0002604 PATO:0001314 +relationship: is_opposite_of PATO:0001314 ! variant temperature [Term] id: PATO:0001314 @@ -8130,7 +8131,7 @@ name: variant temperature def: "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature." [PATO:GVG] subset: value_slim is_a: PATO:0001304 ! variability of temperature -property_value: RO:0002604 PATO:0001313 +relationship: is_opposite_of PATO:0001313 ! invariant temperature [Term] id: PATO:0001315 @@ -8162,7 +8163,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0000189 ! discrimination disjoint_from: PATO:0001319 ! discriminate -property_value: RO:0002604 PATO:0001319 +relationship: is_opposite_of PATO:0001319 ! discriminate [Term] id: PATO:0001319 @@ -8172,7 +8173,7 @@ subset: disposition_slim subset: relational_slim subset: value_slim is_a: PATO:0000189 ! discrimination -property_value: RO:0002604 PATO:0001318 +relationship: is_opposite_of PATO:0001318 ! indiscriminate [Term] id: PATO:0001320 @@ -8461,7 +8462,7 @@ def: "A shape quality that obtains by virtue of the bearer having inward facing subset: cell_quality subset: value_slim is_a: PATO:0002005 ! concavity -property_value: RO:0002604 PATO:0001857 +relationship: is_opposite_of PATO:0001857 ! concave [Term] id: PATO:0001356 @@ -8522,7 +8523,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001662 ! fragility disjoint_from: PATO:0001716 ! non-fragile -property_value: RO:0002604 PATO:0001716 +relationship: is_opposite_of PATO:0001716 ! non-fragile [Term] id: PATO:0001364 @@ -8918,7 +8919,7 @@ name: structured def: "A structural quality inhering in a bearer by virtue of the bearer's having distinct structure." [PATOC:GVG] subset: value_slim is_a: PATO:0000141 ! structure -property_value: RO:0002604 PATO:0001412 +relationship: is_opposite_of PATO:0001412 ! unstructured [Term] id: PATO:0001412 @@ -8926,7 +8927,7 @@ name: unstructured def: "A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure." [PATOC:GVG] subset: value_slim is_a: PATO:0000141 ! structure -property_value: RO:0002604 PATO:0001411 +relationship: is_opposite_of PATO:0001411 ! structured [Term] id: PATO:0001413 @@ -8958,7 +8959,7 @@ name: regular duration def: "A duration which has regular start and/or end times." [PATOC:GVG] subset: value_slim is_a: PATO:0001309 ! duration -property_value: RO:0002604 PATO:0001417 +relationship: is_opposite_of PATO:0001417 ! irregular duration [Term] id: PATO:0001417 @@ -8966,7 +8967,7 @@ name: irregular duration def: "A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times." [PATOC:melissa] subset: value_slim is_a: PATO:0001309 ! duration -property_value: RO:0002604 PATO:0001416 +relationship: is_opposite_of PATO:0001416 ! regular duration [Term] id: PATO:0001418 @@ -9279,7 +9280,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001454 ! sensitivity to oxygen disjoint_from: PATO:0001456 ! anaerobic -property_value: RO:0002604 PATO:0001456 +relationship: is_opposite_of PATO:0001456 ! anaerobic [Term] id: PATO:0001456 @@ -9288,7 +9289,7 @@ def: "A quality inhering in a bearer by virtue of the bearer's independence on o subset: disposition_slim subset: value_slim is_a: PATO:0001454 ! sensitivity to oxygen -property_value: RO:0002604 PATO:0001455 +relationship: is_opposite_of PATO:0001455 ! aerobic [Term] id: PATO:0001457 @@ -9316,7 +9317,7 @@ def: "A sensitivity of a process inhering in a biological process by virtue of t subset: disposition_slim subset: value_slim is_a: PATO:0001458 ! sensitivity of a process to oxygen -property_value: RO:0002604 PATO:0001460 +relationship: is_opposite_of PATO:0001460 ! anaerobic (for occurrence) [Term] id: PATO:0001460 @@ -9325,7 +9326,7 @@ def: "A sensitivity of a process inhering in a biological process by virtue of t subset: disposition_slim subset: value_slim is_a: PATO:0001458 ! sensitivity of a process to oxygen -property_value: RO:0002604 PATO:0001459 +relationship: is_opposite_of PATO:0001459 ! aerobic (for occurrence) [Term] id: PATO:0001461 @@ -9427,7 +9428,7 @@ synonym: "low depth" EXACT [] synonym: "shallow" EXACT [] is_a: PATO:0000587 ! decreased size is_a: PATO:0001595 ! depth -property_value: RO:0002604 PATO:0001596 +relationship: is_opposite_of PATO:0001596 ! increased depth [Term] id: PATO:0001473 @@ -9454,7 +9455,7 @@ subset: value_slim synonym: "high position" RELATED [] is_a: PATO:0000140 ! position is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001476 +relationship: is_opposite_of PATO:0001476 ! decreased position [Term] id: PATO:0001476 @@ -9464,7 +9465,7 @@ subset: value_slim synonym: "low position" RELATED [] is_a: PATO:0000140 ! position is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001475 +relationship: is_opposite_of PATO:0001475 ! increased position [Term] id: PATO:0001477 @@ -9538,7 +9539,7 @@ synonym: "compressed" EXACT [] synonym: "dense" RELATED [] synonym: "squashed" EXACT [] is_a: PATO:0000141 ! structure -property_value: RO:0002604 PATO:0002452 +relationship: is_opposite_of PATO:0002452 ! decondensed [Term] id: PATO:0001486 @@ -9594,7 +9595,7 @@ name: hypertrophic growth comment: This term will be obsoleted; Use GO:growth and PATO:rate. subset: value_slim is_a: PATO:0001492 ! growth rate -property_value: RO:0002604 PATO:0001494 +relationship: is_opposite_of PATO:0001494 ! hypotrophic growth [Term] id: PATO:0001494 @@ -9602,7 +9603,7 @@ name: hypotrophic growth comment: This term will be obsoleted; Use GO:growth and PATO:rate. subset: value_slim is_a: PATO:0001492 ! growth rate -property_value: RO:0002604 PATO:0001493 +relationship: is_opposite_of PATO:0001493 ! hypertrophic growth [Term] id: PATO:0001495 @@ -9658,7 +9659,7 @@ def: "A quality inhering in a bearer by virtue of the bearer's lacking complete subset: value_slim synonym: "underdeveloped" RELATED [] is_a: PATO:0000261 ! maturity -property_value: RO:0002604 PATO:0001701 +relationship: is_opposite_of PATO:0001701 ! mature [Term] id: PATO:0001502 @@ -9728,7 +9729,7 @@ def: "A functionality quality held by the bearer when the latter is able to perf subset: disposition_slim subset: value_slim is_a: PATO:0001509 ! functionality -property_value: RO:0002604 PATO:0001511 +relationship: is_opposite_of PATO:0001511 ! non-functional [Term] id: PATO:0001511 @@ -9742,7 +9743,7 @@ synonym: "disfunctional" EXACT [] synonym: "failure" RELATED [] synonym: "functional failure" EXACT [] is_a: PATO:0001509 ! functionality -property_value: RO:0002604 PATO:0001510 +relationship: is_opposite_of PATO:0001510 ! functional [Term] id: PATO:0001512 @@ -9944,7 +9945,7 @@ subset: value_slim synonym: "soluble" EXACT [] is_a: PATO:0001536 ! solubility disjoint_from: PATO:0001538 ! insoluble in -property_value: RO:0002604 PATO:0001538 +relationship: is_opposite_of PATO:0001538 ! insoluble in [Term] id: PATO:0001538 @@ -9955,7 +9956,7 @@ subset: relational_slim subset: value_slim synonym: "insoluble" EXACT [] is_a: PATO:0001536 ! solubility -property_value: RO:0002604 PATO:0001537 +relationship: is_opposite_of PATO:0001537 ! soluble in [Term] id: PATO:0001539 @@ -10003,7 +10004,7 @@ subset: disposition_slim subset: value_slim synonym: "bendy" EXACT [] is_a: PATO:0001543 ! flexibility -property_value: RO:0002604 PATO:0001545 +relationship: is_opposite_of PATO:0001545 ! inflexible [Term] id: PATO:0001545 @@ -10014,7 +10015,7 @@ subset: value_slim synonym: "stiff" EXACT [] synonym: "stiffness" RELATED [] is_a: PATO:0001543 ! flexibility -property_value: RO:0002604 PATO:0001544 +relationship: is_opposite_of PATO:0001544 ! flexible [Term] id: PATO:0001546 @@ -10051,7 +10052,7 @@ synonym: "high sensitivity toward" EXACT [] synonym: "increased sensitivity" EXACT [] is_a: PATO:0000516 ! sensitive toward is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001550 +relationship: is_opposite_of PATO:0001550 ! decreased sensitivity toward [Term] id: PATO:0001550 @@ -10064,7 +10065,7 @@ synonym: "decreased sensitivity" EXACT [] synonym: "low sensitivity toward" EXACT [] is_a: PATO:0000516 ! sensitive toward is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001549 +relationship: is_opposite_of PATO:0001549 ! increased sensitivity toward [Term] id: PATO:0001551 @@ -10076,7 +10077,7 @@ synonym: "high sensitivity of occurrent" EXACT [] synonym: "increased sensitivity of occurrent" EXACT [] is_a: PATO:0001457 ! sensitivity of a process is_a: PATO:0002304 ! increased process quality -property_value: RO:0002604 PATO:0001552 +relationship: is_opposite_of PATO:0001552 ! decreased sensitivity of a process [Term] id: PATO:0001552 @@ -10088,7 +10089,7 @@ synonym: "decreased sensitivity of occurrent" EXACT [] synonym: "low sensitivity of occurrent" EXACT [] is_a: PATO:0001457 ! sensitivity of a process is_a: PATO:0002302 ! decreased process quality -property_value: RO:0002604 PATO:0001551 +relationship: is_opposite_of PATO:0001551 ! increased sensitivity of a process [Term] id: PATO:0001553 @@ -10099,7 +10100,7 @@ subset: value_slim synonym: "high sensitivity of occurrent to oxygen" EXACT [] is_a: PATO:0001459 ! aerobic (for occurrence) is_a: PATO:0001551 ! increased sensitivity of a process -property_value: RO:0002604 PATO:0001554 +relationship: is_opposite_of PATO:0001554 ! decreased sensitivity of a process to oxygen [Term] id: PATO:0001554 @@ -10110,7 +10111,7 @@ subset: value_slim synonym: "low sensitivity of occurrent to oxygen" EXACT [] is_a: PATO:0001459 ! aerobic (for occurrence) is_a: PATO:0001552 ! decreased sensitivity of a process -property_value: RO:0002604 PATO:0001553 +relationship: is_opposite_of PATO:0001553 ! increased sensitivity of a process to oxygen [Term] id: PATO:0001555 @@ -10166,7 +10167,7 @@ synonym: "low mass" EXACT [] synonym: "small mass" EXACT [] is_a: PATO:0000125 ! mass is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001563 +relationship: is_opposite_of PATO:0001563 ! increased mass [Term] id: PATO:0001563 @@ -10178,7 +10179,7 @@ synonym: "high mass" EXACT [] synonym: "large mass" EXACT [] is_a: PATO:0000125 ! mass is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001562 +relationship: is_opposite_of PATO:0001562 ! decreased mass [Term] id: PATO:0001564 @@ -10198,7 +10199,7 @@ synonym: "diffuse" EXACT [] synonym: "scattered" EXACT [] is_a: PATO:0000060 ! spatial pattern disjoint_from: PATO:0001629 ! aggregated -property_value: RO:0002604 PATO:0001567 +relationship: is_opposite_of PATO:0001567 ! undistributed [Term] id: PATO:0001567 @@ -10206,7 +10207,7 @@ name: undistributed def: "A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up." [WordNet:WordNet] subset: value_slim is_a: PATO:0000060 ! spatial pattern -property_value: RO:0002604 PATO:0001566 +relationship: is_opposite_of PATO:0001566 ! distributed [Term] id: PATO:0001570 @@ -10248,7 +10249,7 @@ subset: value_slim synonym: "low pressure" EXACT [] is_a: PATO:0001025 ! pressure is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001576 +relationship: is_opposite_of PATO:0001576 ! increased pressure [Term] id: PATO:0001576 @@ -10258,7 +10259,7 @@ subset: value_slim synonym: "high pressure" EXACT [] is_a: PATO:0001025 ! pressure is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001575 +relationship: is_opposite_of PATO:0001575 ! decreased pressure [Term] id: PATO:0001577 @@ -10269,7 +10270,7 @@ subset: value_slim synonym: "high permeability" EXACT [] is_a: PATO:0000982 ! permeable is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001578 +relationship: is_opposite_of PATO:0001578 ! decreased permeability [Term] id: PATO:0001578 @@ -10280,7 +10281,7 @@ subset: value_slim synonym: "low permeability" EXACT [] is_a: PATO:0000982 ! permeable is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001577 +relationship: is_opposite_of PATO:0001577 ! increased permeability [Term] id: PATO:0001579 @@ -10300,7 +10301,7 @@ subset: value_slim synonym: "high contractility" EXACT [] is_a: PATO:0001690 ! contractile is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001581 +relationship: is_opposite_of PATO:0001581 ! decreased contractility [Term] id: PATO:0001581 @@ -10311,7 +10312,7 @@ subset: value_slim synonym: "low contractility" EXACT [] is_a: PATO:0001690 ! contractile is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001580 +relationship: is_opposite_of PATO:0001580 ! increased contractility [Term] id: PATO:0001582 @@ -10328,7 +10329,7 @@ subset: value_slim synonym: "low variability" EXACT [] is_a: PATO:0001227 ! variant is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0001584 +relationship: is_opposite_of PATO:0001584 ! increased variability [Term] id: PATO:0001584 @@ -10338,7 +10339,7 @@ subset: value_slim synonym: "high variability" EXACT [] is_a: PATO:0001227 ! variant is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0001583 +relationship: is_opposite_of PATO:0001583 ! decreased variability [Term] id: PATO:0001585 @@ -10366,7 +10367,7 @@ subset: value_slim synonym: "high variability of rate" EXACT [] is_a: PATO:0001586 ! variability of rate is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0001588 +relationship: is_opposite_of PATO:0001588 ! decreased variability of rate [Term] id: PATO:0001588 @@ -10376,7 +10377,7 @@ subset: value_slim synonym: "low variability of rate" EXACT [] is_a: PATO:0001586 ! variability of rate is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0001587 +relationship: is_opposite_of PATO:0001587 ! increased variability of rate [Term] id: PATO:0001589 @@ -10409,7 +10410,7 @@ def: "A curvature which is relatively high." [PATO:GVG] subset: value_slim is_a: PATO:0000406 ! curved is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001593 +relationship: is_opposite_of PATO:0001593 ! decreased curvature [Term] id: PATO:0001593 @@ -10418,7 +10419,7 @@ def: "A curvature which is relatively low." [PATO:GVG] subset: value_slim is_a: PATO:0000406 ! curved is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001592 +relationship: is_opposite_of PATO:0001592 ! increased curvature [Term] id: PATO:0001594 @@ -10444,7 +10445,7 @@ subset: value_slim synonym: "deep" EXACT [] is_a: PATO:0000586 ! increased size is_a: PATO:0001595 ! depth -property_value: RO:0002604 PATO:0001472 +relationship: is_opposite_of PATO:0001472 ! decreased depth [Term] id: PATO:0001597 @@ -10505,7 +10506,7 @@ def: "A life span which is relatively high." [PATO:GVG] synonym: "high life span" EXACT [] is_a: PATO:0000050 ! life span is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001604 +relationship: is_opposite_of PATO:0001604 ! decreased life span [Term] id: PATO:0001604 @@ -10514,7 +10515,7 @@ def: "A life span which is relatively low." [PATO:GVG] synonym: "low life span" EXACT [] is_a: PATO:0000050 ! life span is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001603 +relationship: is_opposite_of PATO:0001603 ! increased life span [Term] id: PATO:0001605 @@ -10572,7 +10573,7 @@ subset: value_slim synonym: "high variability of color" EXACT [] is_a: PATO:0001615 ! variant color is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0001613 +relationship: is_opposite_of PATO:0001613 ! decreased variability of color [Term] id: PATO:0001613 @@ -10582,7 +10583,7 @@ subset: value_slim synonym: "low variability of color" EXACT [] is_a: PATO:0001615 ! variant color is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0001612 +relationship: is_opposite_of PATO:0001612 ! increased variability of color [Term] id: PATO:0001614 @@ -10590,7 +10591,7 @@ name: invariant color def: "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color." [PATO:GVG] subset: value_slim is_a: PATO:0001611 ! variability of color -property_value: RO:0002604 PATO:0001615 +relationship: is_opposite_of PATO:0001615 ! variant color [Term] id: PATO:0001615 @@ -10598,7 +10599,7 @@ name: variant color def: "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour." [PATO:GVG] subset: value_slim is_a: PATO:0001611 ! variability of color -property_value: RO:0002604 PATO:0001614 +relationship: is_opposite_of PATO:0001614 ! invariant color [Term] id: PATO:0001617 @@ -10618,7 +10619,7 @@ subset: value_slim synonym: "high tonicity" EXACT [] is_a: PATO:0001439 ! tonicity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001619 +relationship: is_opposite_of PATO:0001619 ! decreased tonicity [Term] id: PATO:0001619 @@ -10629,7 +10630,7 @@ subset: value_slim synonym: "low tonicity" EXACT [] is_a: PATO:0001439 ! tonicity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001618 +relationship: is_opposite_of PATO:0001618 ! increased tonicity [Term] id: PATO:0001620 @@ -10648,7 +10649,7 @@ subset: value_slim synonym: "low turgor" EXACT [] is_a: PATO:0001620 ! turgor is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001622 +relationship: is_opposite_of PATO:0001622 ! increased turgor [Term] id: PATO:0001622 @@ -10659,7 +10660,7 @@ subset: value_slim synonym: "high turgor" EXACT [] is_a: PATO:0001620 ! turgor is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001621 +relationship: is_opposite_of PATO:0001621 ! decreased turgor [Term] id: PATO:0001623 @@ -10689,7 +10690,7 @@ synonym: "low functionality" EXACT [] synonym: "partial functionality" EXACT [] is_a: PATO:0001510 ! functional is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001625 +relationship: is_opposite_of PATO:0001625 ! increased functionality [Term] id: PATO:0001625 @@ -10700,7 +10701,7 @@ subset: value_slim synonym: "high functionality" EXACT [] is_a: PATO:0001510 ! functional is_a: PATO:0001559 ! having extra function -property_value: RO:0002604 PATO:0001624 +relationship: is_opposite_of PATO:0001624 ! decreased functionality [Term] id: PATO:0001626 @@ -10718,7 +10719,7 @@ def: "A wholeness quality inhering in a bearer by virtue of the bearer's has eno subset: value_slim synonym: "adequate" RELATED [] is_a: PATO:0001626 ! sufficiency -property_value: RO:0002604 PATO:0001628 +relationship: is_opposite_of PATO:0001628 ! insufficient [Term] id: PATO:0001628 @@ -10727,7 +10728,7 @@ def: "A wholeness quality inhering in a bearer by virtue of the bearer's lacks e subset: value_slim synonym: "inadequate" RELATED [] is_a: PATO:0001626 ! sufficiency -property_value: RO:0002604 PATO:0001627 +relationship: is_opposite_of PATO:0001627 ! sufficient [Term] id: PATO:0001629 @@ -10783,7 +10784,7 @@ def: "A necessity quality (continuant) inhering in a bearer by virtue of the bea subset: value_slim is_a: PATO:0001634 ! necessity (continuant) disjoint_from: PATO:0001636 ! unnecessary (continuant) -property_value: RO:0002604 PATO:0001636 +relationship: is_opposite_of PATO:0001636 ! unnecessary (continuant) [Term] id: PATO:0001636 @@ -10791,7 +10792,7 @@ name: unnecessary (continuant) def: "A necessity quality (continuant) inhering in a bearer by virtue of the bearer's being non-essential or dispensable." [WordNet:WordNet] subset: value_slim is_a: PATO:0001634 ! necessity (continuant) -property_value: RO:0002604 PATO:0001635 +relationship: is_opposite_of PATO:0001635 ! necessary (continuant) [Term] id: PATO:0001637 @@ -10806,7 +10807,7 @@ name: necessary (occurrent) def: "A necessity quality inhering in a process by virtue of the bearer's being essential or indispensable." [PATO:GVG] subset: value_slim is_a: PATO:0001637 ! necessity of occurrent -property_value: RO:0002604 PATO:0001639 +relationship: is_opposite_of PATO:0001639 ! unnecessary (occurrent) [Term] id: PATO:0001639 @@ -10814,7 +10815,7 @@ name: unnecessary (occurrent) def: "A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable." [PATO:GVG] subset: value_slim is_a: PATO:0001637 ! necessity of occurrent -property_value: RO:0002604 PATO:0001638 +relationship: is_opposite_of PATO:0001638 ! necessary (occurrent) [Term] id: PATO:0001643 @@ -10868,7 +10869,7 @@ synonym: "high resistance to" EXACT [] synonym: "increased resistance" EXACT [] is_a: PATO:0001178 ! resistant to is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001651 +relationship: is_opposite_of PATO:0001651 ! decreased resistance to [Term] id: PATO:0001651 @@ -10881,7 +10882,7 @@ synonym: "decreased resistance" EXACT [] synonym: "low resistance to" EXACT [] is_a: PATO:0001178 ! resistant to is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001650 +relationship: is_opposite_of PATO:0001650 ! increased resistance to [Term] id: PATO:0001652 @@ -10901,7 +10902,7 @@ subset: value_slim synonym: "aligned" EXACT [] synonym: "aligned to" RELATED [] is_a: PATO:0001652 ! alignment -property_value: RO:0002604 PATO:0001654 +relationship: is_opposite_of PATO:0001654 ! misaligned with [Term] id: PATO:0001654 @@ -10912,7 +10913,7 @@ subset: value_slim synonym: "misaligned" EXACT [] synonym: "unaligned with" EXACT [] is_a: PATO:0001652 ! alignment -property_value: RO:0002604 PATO:0001653 +relationship: is_opposite_of PATO:0001653 ! aligned with [Term] id: PATO:0001655 @@ -10932,7 +10933,7 @@ subset: value_slim synonym: "low osmolarity" EXACT [] is_a: PATO:0001655 ! osmolarity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001657 +relationship: is_opposite_of PATO:0001657 ! increased osmolarity [Term] id: PATO:0001657 @@ -10943,7 +10944,7 @@ subset: value_slim synonym: "high osmolarity" EXACT [] is_a: PATO:0001655 ! osmolarity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001656 +relationship: is_opposite_of PATO:0001656 ! decreased osmolarity [Term] id: PATO:0001658 @@ -10997,7 +10998,7 @@ subset: value_slim synonym: "high solubility" EXACT [] is_a: PATO:0001537 ! soluble in is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001664 +relationship: is_opposite_of PATO:0001664 ! decreased solubility [Term] id: PATO:0001664 @@ -11009,7 +11010,7 @@ subset: value_slim synonym: "low solubility" EXACT [] is_a: PATO:0001537 ! soluble in is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001663 +relationship: is_opposite_of PATO:0001663 ! increased solubility [Term] id: PATO:0001665 @@ -11054,7 +11055,7 @@ synonym: "high susceptibility toward" EXACT [] synonym: "increased susceptibility" EXACT [] is_a: PATO:0001152 ! susceptible toward is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001670 +relationship: is_opposite_of PATO:0001670 ! decreased susceptibility toward [Term] id: PATO:0001670 @@ -11067,7 +11068,7 @@ synonym: "decreased susceptibility" EXACT [] synonym: "low susceptibility toward" EXACT [] is_a: PATO:0001152 ! susceptible toward is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001669 +relationship: is_opposite_of PATO:0001669 ! increased susceptibility toward [Term] id: PATO:0001671 @@ -11077,7 +11078,7 @@ subset: value_slim synonym: "high distribution" EXACT [] is_a: PATO:0001475 ! increased position is_a: PATO:0001566 ! distributed -property_value: RO:0002604 PATO:0001672 +relationship: is_opposite_of PATO:0001672 ! decreased distribution [Term] id: PATO:0001672 @@ -11087,7 +11088,7 @@ subset: value_slim synonym: "low distribution" EXACT [] is_a: PATO:0001476 ! decreased position is_a: PATO:0001566 ! distributed -property_value: RO:0002604 PATO:0001671 +relationship: is_opposite_of PATO:0001671 ! increased distribution [Term] id: PATO:0001673 @@ -11115,7 +11116,7 @@ subset: value_slim synonym: "low efficiency" EXACT [] is_a: PATO:0001678 ! efficient is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001676 +relationship: is_opposite_of PATO:0001676 ! increased efficiency [Term] id: PATO:0001676 @@ -11125,7 +11126,7 @@ subset: value_slim synonym: "high efficiency" EXACT [] is_a: PATO:0001678 ! efficient is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001675 +relationship: is_opposite_of PATO:0001675 ! decreased efficiency [Term] id: PATO:0001677 @@ -11134,7 +11135,7 @@ def: "An efficiency quality inhering in a bearer by virtue of the bearer's lacki subset: value_slim is_a: PATO:0001029 ! efficiency disjoint_from: PATO:0001678 ! efficient -property_value: RO:0002604 PATO:0001678 +relationship: is_opposite_of PATO:0001678 ! efficient [Term] id: PATO:0001678 @@ -11142,7 +11143,7 @@ name: efficient def: "An efficiency quality inhering in a bearer by virtue of the bearer's having efficiency." [PATOC:GVG] subset: value_slim is_a: PATO:0001029 ! efficiency -property_value: RO:0002604 PATO:0001677 +relationship: is_opposite_of PATO:0001677 ! inefficient [Term] id: PATO:0001679 @@ -11187,7 +11188,7 @@ subset: value_slim synonym: "high magnetism" EXACT [] is_a: PATO:0001685 ! magnetic is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001684 +relationship: is_opposite_of PATO:0001684 ! decreased magnetism [Term] id: PATO:0001684 @@ -11198,7 +11199,7 @@ subset: value_slim synonym: "low magnetism" EXACT [] is_a: PATO:0001685 ! magnetic is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001683 +relationship: is_opposite_of PATO:0001683 ! increased magnetism [Term] id: PATO:0001685 @@ -11208,7 +11209,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001682 ! magnetism disjoint_from: PATO:0001686 ! non-magnetic -property_value: RO:0002604 PATO:0001686 +relationship: is_opposite_of PATO:0001686 ! non-magnetic [Term] id: PATO:0001686 @@ -11217,7 +11218,7 @@ def: "A magnetic quality inhering in a bearer by virtue of the bearer's inabilit subset: disposition_slim subset: value_slim is_a: PATO:0001682 ! magnetism -property_value: RO:0002604 PATO:0001685 +relationship: is_opposite_of PATO:0001685 ! magnetic [Term] id: PATO:0001687 @@ -11235,7 +11236,7 @@ synonym: "elevated" RELATED [] synonym: "high elevation" EXACT [] is_a: PATO:0001475 ! increased position is_a: PATO:0001687 ! elevation -property_value: RO:0002604 PATO:0001689 +relationship: is_opposite_of PATO:0001689 ! decreased elevation [Term] id: PATO:0001689 @@ -11245,7 +11246,7 @@ subset: value_slim synonym: "low elevation" EXACT [] is_a: PATO:0001476 ! decreased position is_a: PATO:0001687 ! elevation -property_value: RO:0002604 PATO:0001688 +relationship: is_opposite_of PATO:0001688 ! increased elevation [Term] id: PATO:0001690 @@ -11256,7 +11257,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001579 ! contractility disjoint_from: PATO:0001691 ! non-contractile -property_value: RO:0002604 PATO:0001691 +relationship: is_opposite_of PATO:0001691 ! non-contractile [Term] id: PATO:0001691 @@ -11266,7 +11267,7 @@ comment: This refers to the disposition of the bearer. subset: disposition_slim subset: value_slim is_a: PATO:0001579 ! contractility -property_value: RO:0002604 PATO:0001690 +relationship: is_opposite_of PATO:0001690 ! contractile [Term] id: PATO:0001693 @@ -11277,7 +11278,7 @@ subset: value_slim synonym: "high viscosity" EXACT [] is_a: PATO:0000998 ! viscous is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001694 +relationship: is_opposite_of PATO:0001694 ! decreased viscosity [Term] id: PATO:0001694 @@ -11288,7 +11289,7 @@ subset: value_slim synonym: "low viscosity" EXACT [] is_a: PATO:0000998 ! viscous is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001693 +relationship: is_opposite_of PATO:0001693 ! increased viscosity [Term] id: PATO:0001695 @@ -11299,7 +11300,7 @@ subset: value_slim synonym: "high fecundity" EXACT [] is_a: PATO:0000273 ! fecundity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001696 +relationship: is_opposite_of PATO:0001696 ! decreased fecundity [Term] id: PATO:0001696 @@ -11310,7 +11311,7 @@ subset: value_slim synonym: "low fecundity" EXACT [] is_a: PATO:0000273 ! fecundity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001695 +relationship: is_opposite_of PATO:0001695 ! increased fecundity [Term] id: PATO:0001697 @@ -11322,7 +11323,7 @@ subset: value_slim synonym: "low photosensitivity" EXACT [] is_a: PATO:0000547 ! photosensitive is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001698 +relationship: is_opposite_of PATO:0001698 ! increased photosensitivity [Term] id: PATO:0001698 @@ -11334,7 +11335,7 @@ subset: value_slim synonym: "high photosensitivity" EXACT [] is_a: PATO:0000547 ! photosensitive is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001697 +relationship: is_opposite_of PATO:0001697 ! decreased photosensitivity [Term] id: PATO:0001699 @@ -11342,7 +11343,7 @@ name: regular sleep pattern def: "A sleep pattern which has regular start and/or end times." [PATOC:GVG] subset: value_slim is_a: PATO:0000062 ! sleep pattern -property_value: RO:0002604 PATO:0001700 +relationship: is_opposite_of PATO:0001700 ! irregular sleep pattern [Term] id: PATO:0001700 @@ -11350,7 +11351,7 @@ name: irregular sleep pattern def: "A sleep pattern which has irregular start and/or end times." [PATOC:GVG] subset: value_slim is_a: PATO:0000062 ! sleep pattern -property_value: RO:0002604 PATO:0001699 +relationship: is_opposite_of PATO:0001699 ! regular sleep pattern [Term] id: PATO:0001701 @@ -11358,7 +11359,7 @@ name: mature def: "A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development." [Merriam-Webster:Merriam-Webster] subset: value_slim is_a: PATO:0000261 ! maturity -property_value: RO:0002604 PATO:0001501 +relationship: is_opposite_of PATO:0001501 ! immature [Term] id: PATO:0001702 @@ -11400,7 +11401,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002265 ! behavioural activity disjoint_from: PATO:0001707 ! behavioural active -property_value: RO:0002604 PATO:0001707 +relationship: is_opposite_of PATO:0001707 ! behavioural active [Term] id: PATO:0001707 @@ -11408,7 +11409,7 @@ name: behavioural active def: "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity." [PATOC:GVG] subset: value_slim is_a: PATO:0002265 ! behavioural activity -property_value: RO:0002604 PATO:0001706 +relationship: is_opposite_of PATO:0001706 ! behavioural inactive [Term] id: PATO:0001708 @@ -11449,7 +11450,7 @@ def: "A perimeter which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0000573 ! increased length is_a: PATO:0001711 ! perimeter -property_value: RO:0002604 PATO:0001713 +relationship: is_opposite_of PATO:0001713 ! decreased perimeter [Term] id: PATO:0001713 @@ -11458,7 +11459,7 @@ def: "A perimeter which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0000574 ! decreased length is_a: PATO:0001711 ! perimeter -property_value: RO:0002604 PATO:0001712 +relationship: is_opposite_of PATO:0001712 ! increased perimeter [Term] id: PATO:0001714 @@ -11467,7 +11468,7 @@ def: "A diameter which is relatively large." [PATOC:GVG] subset: value_slim is_a: PATO:0000573 ! increased length is_a: PATO:0001334 ! diameter -property_value: RO:0002604 PATO:0001715 +relationship: is_opposite_of PATO:0001715 ! decreased diameter [Term] id: PATO:0001715 @@ -11476,7 +11477,7 @@ def: "A diameter which is relatively small." [PATOC:GVG] subset: value_slim is_a: PATO:0000574 ! decreased length is_a: PATO:0001334 ! diameter -property_value: RO:0002604 PATO:0001714 +relationship: is_opposite_of PATO:0001714 ! increased diameter [Term] id: PATO:0001716 @@ -11488,7 +11489,7 @@ synonym: "resilient" RELATED [] synonym: "strong" RELATED [] synonym: "tough" RELATED [] is_a: PATO:0001662 ! fragility -property_value: RO:0002604 PATO:0001362 +relationship: is_opposite_of PATO:0001362 ! fragile [Term] id: PATO:0001717 @@ -11538,7 +11539,7 @@ subset: value_slim synonym: "high female receptivity" EXACT [] is_a: PATO:0001720 ! female receptivity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001724 +relationship: is_opposite_of PATO:0001724 ! decreased female receptivity [Term] id: PATO:0001724 @@ -11549,7 +11550,7 @@ subset: value_slim synonym: "low female receptivity" EXACT [] is_a: PATO:0001720 ! female receptivity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001723 +relationship: is_opposite_of PATO:0001723 ! increased female receptivity [Term] id: PATO:0001725 @@ -11560,7 +11561,7 @@ subset: value_slim synonym: "high male receptivity" EXACT [] is_a: PATO:0001721 ! male receptivity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001726 +relationship: is_opposite_of PATO:0001726 ! decreased male receptivity [Term] id: PATO:0001726 @@ -11571,7 +11572,7 @@ subset: value_slim synonym: "low male receptivity" EXACT [] is_a: PATO:0001721 ! male receptivity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001725 +relationship: is_opposite_of PATO:0001725 ! increased male receptivity [Term] id: PATO:0001727 @@ -11706,7 +11707,7 @@ subset: value_slim synonym: "high radioactivity" EXACT [] is_a: PATO:0001741 ! radioactive is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001743 +relationship: is_opposite_of PATO:0001743 ! decreased radioactivity [Term] id: PATO:0001743 @@ -11716,7 +11717,7 @@ subset: value_slim synonym: "low radioactivity" EXACT [] is_a: PATO:0001741 ! radioactive is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001742 +relationship: is_opposite_of PATO:0001742 ! increased radioactivity [Term] id: PATO:0001744 @@ -11767,7 +11768,7 @@ subset: value_slim synonym: "hypoplastic growth" EXACT [] synonym: "pedomorphic growth" EXACT [] is_a: PATO:0001490 ! heterochronic growth -property_value: RO:0002604 PATO:0001752 +relationship: is_opposite_of PATO:0001752 ! peramorphic growth [Term] id: PATO:0001750 @@ -11790,7 +11791,7 @@ def: "A heterochronic growth quality inhering in an organism, structure, or grou subset: attribute_slim synonym: "hyperplastic growth" EXACT [] is_a: PATO:0001490 ! heterochronic growth -property_value: RO:0002604 PATO:0001749 +relationship: is_opposite_of PATO:0001749 ! paedomorphic growth [Term] id: PATO:0001753 @@ -11856,7 +11857,7 @@ name: female semi-fertile subset: disposition_slim subset: value_slim is_a: PATO:0001767 ! semi-fertile -property_value: RO:0002604 PATO:0001763 +relationship: is_opposite_of PATO:0001763 ! female semi-sterile [Term] id: PATO:0001761 @@ -11864,7 +11865,7 @@ name: male semi-fertile subset: disposition_slim subset: value_slim is_a: PATO:0001767 ! semi-fertile -property_value: RO:0002604 PATO:0001762 +relationship: is_opposite_of PATO:0001762 ! male semi-sterile [Term] id: PATO:0001762 @@ -11872,7 +11873,7 @@ name: male semi-sterile subset: disposition_slim subset: value_slim is_a: PATO:0000279 ! male fertility -property_value: RO:0002604 PATO:0001761 +relationship: is_opposite_of PATO:0001761 ! male semi-fertile [Term] id: PATO:0001763 @@ -11880,7 +11881,7 @@ name: female semi-sterile subset: disposition_slim subset: value_slim is_a: PATO:0000277 ! female fertility -property_value: RO:0002604 PATO:0001760 +relationship: is_opposite_of PATO:0001760 ! female semi-fertile [Term] id: PATO:0001764 @@ -11890,7 +11891,7 @@ subset: value_slim synonym: "high age" EXACT [] is_a: PATO:0000011 ! age is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001765 +relationship: is_opposite_of PATO:0001765 ! decreased age [Term] id: PATO:0001765 @@ -11900,7 +11901,7 @@ subset: value_slim synonym: "low age" EXACT [] is_a: PATO:0000011 ! age is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001764 +relationship: is_opposite_of PATO:0001764 ! increased age [Term] id: PATO:0001766 @@ -11984,7 +11985,7 @@ subset: value_slim synonym: "high flexibility" EXACT [] is_a: PATO:0001544 ! flexible is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001777 +relationship: is_opposite_of PATO:0001777 ! decreased flexibility [Term] id: PATO:0001777 @@ -11995,7 +11996,7 @@ subset: value_slim synonym: "low flexibility" EXACT [] is_a: PATO:0001544 ! flexible is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001776 +relationship: is_opposite_of PATO:0001776 ! increased flexibility [Term] id: PATO:0001778 @@ -12005,7 +12006,7 @@ subset: value_slim synonym: "high strength" EXACT [] is_a: PATO:0001230 ! strength is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001779 +relationship: is_opposite_of PATO:0001779 ! decreased strength [Term] id: PATO:0001779 @@ -12015,7 +12016,7 @@ subset: value_slim synonym: "weak" EXACT [] is_a: PATO:0001230 ! strength is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001778 +relationship: is_opposite_of PATO:0001778 ! increased strength [Term] id: PATO:0001780 @@ -12041,7 +12042,7 @@ subset: value_slim synonym: "high intensity" EXACT [] is_a: PATO:0000049 ! intensity is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0001783 +relationship: is_opposite_of PATO:0001783 ! decreased intensity [Term] id: PATO:0001783 @@ -12051,7 +12052,7 @@ subset: value_slim synonym: "low intensity" EXACT [] is_a: PATO:0000049 ! intensity is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0001782 +relationship: is_opposite_of PATO:0001782 ! increased intensity [Term] id: PATO:0001784 @@ -12104,7 +12105,7 @@ subset: value_slim synonym: "high density" EXACT [] is_a: PATO:0001164 ! dense is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001790 +relationship: is_opposite_of PATO:0001790 ! decreased mass density [Term] id: PATO:0001789 @@ -12123,7 +12124,7 @@ subset: value_slim synonym: "low density" EXACT [] is_a: PATO:0001164 ! dense is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001788 +relationship: is_opposite_of PATO:0001788 ! increased mass density [Term] id: PATO:0001791 @@ -12168,7 +12169,7 @@ subset: value_slim synonym: "high coiling" EXACT [] is_a: PATO:0000404 ! coiled is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001796 +relationship: is_opposite_of PATO:0001796 ! decreased coiling [Term] id: PATO:0001796 @@ -12179,7 +12180,7 @@ subset: value_slim synonym: "low coiling" EXACT [] is_a: PATO:0000404 ! coiled is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001795 +relationship: is_opposite_of PATO:0001795 ! increased coiling [Term] id: PATO:0001798 @@ -12267,7 +12268,7 @@ subset: value_slim synonym: "low sensitivity to irradiation" EXACT [] is_a: PATO:0001806 ! sensitivity to irradiation is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001808 +relationship: is_opposite_of PATO:0001808 ! increased sensitivity to irradiation [Term] id: PATO:0001808 @@ -12278,7 +12279,7 @@ subset: value_slim synonym: "high sensitivity to irradiation" EXACT [] is_a: PATO:0001806 ! sensitivity to irradiation is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001807 +relationship: is_opposite_of PATO:0001807 ! decreased sensitivity to irradiation [Term] id: PATO:0001809 @@ -12347,7 +12348,7 @@ subset: value_slim synonym: "high fatigability" EXACT [] is_a: PATO:0001779 ! decreased strength is_a: PATO:0001815 ! fatigability -property_value: RO:0002604 PATO:0001817 +relationship: is_opposite_of PATO:0001817 ! decreased fatigability [Term] id: PATO:0001817 @@ -12358,7 +12359,7 @@ subset: value_slim synonym: "low fatigability" EXACT [] is_a: PATO:0001778 ! increased strength is_a: PATO:0001815 ! fatigability -property_value: RO:0002604 PATO:0001816 +relationship: is_opposite_of PATO:0001816 ! increased fatigability [Term] id: PATO:0001818 @@ -12368,7 +12369,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence -property_value: RO:0002604 PATO:0002026 +relationship: is_opposite_of PATO:0002026 ! non-progressive [Term] id: PATO:0001819 @@ -12387,7 +12388,7 @@ subset: mpath_slim subset: value_slim synonym: "unperforated" EXACT [] is_a: PATO:0002014 ! structure, cavities -property_value: RO:0002604 PATO:0002112 +relationship: is_opposite_of PATO:0002112 ! perforate [Term] id: PATO:0001822 @@ -12406,7 +12407,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0001822 ! wetness disjoint_from: PATO:0001824 ! dry -property_value: RO:0002604 PATO:0001824 +relationship: is_opposite_of PATO:0001824 ! dry [Term] id: PATO:0001824 @@ -12415,7 +12416,7 @@ def: "A wetness quality inhering in a bearer by virtue of the bearer's not being subset: mpath_slim subset: value_slim is_a: PATO:0001822 ! wetness -property_value: RO:0002604 PATO:0001823 +relationship: is_opposite_of PATO:0001823 ! wet [Term] id: PATO:0001825 @@ -12424,7 +12425,7 @@ def: "A wetness quality that is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0001823 ! wet is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001826 +relationship: is_opposite_of PATO:0001826 ! decreased wetness [Term] id: PATO:0001826 @@ -12434,7 +12435,7 @@ subset: value_slim synonym: "low wetness" EXACT [] is_a: PATO:0001823 ! wet is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001825 +relationship: is_opposite_of PATO:0001825 ! increased wetness [Term] id: PATO:0001827 @@ -12466,7 +12467,7 @@ subset: value_slim synonym: "low female fertility" EXACT [] is_a: PATO:0000888 ! female fertile is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001831 +relationship: is_opposite_of PATO:0001831 ! increased female fertility [Term] id: PATO:0001831 @@ -12477,7 +12478,7 @@ subset: value_slim synonym: "high female fertility" EXACT [] is_a: PATO:0000888 ! female fertile is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001830 +relationship: is_opposite_of PATO:0001830 ! decreased female fertility [Term] id: PATO:0001832 @@ -12488,7 +12489,7 @@ subset: value_slim synonym: "high male fertility" EXACT [] is_a: PATO:0000891 ! male fertile is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001833 +relationship: is_opposite_of PATO:0001833 ! decreased male fertility [Term] id: PATO:0001833 @@ -12499,7 +12500,7 @@ subset: value_slim synonym: "low male fertility" EXACT [] is_a: PATO:0000891 ! male fertile is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001832 +relationship: is_opposite_of PATO:0001832 ! increased male fertility [Term] id: PATO:0001834 @@ -12510,7 +12511,7 @@ subset: value_slim synonym: "low fertility" EXACT [] is_a: PATO:0000955 ! fertile is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001835 +relationship: is_opposite_of PATO:0001835 ! increased fertility [Term] id: PATO:0001835 @@ -12521,7 +12522,7 @@ subset: value_slim synonym: "high fertility" EXACT [] is_a: PATO:0000955 ! fertile is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001834 +relationship: is_opposite_of PATO:0001834 ! decreased fertility [Term] id: PATO:0001836 @@ -12539,7 +12540,7 @@ subset: value_slim synonym: "low flow" EXACT [] is_a: PATO:0002243 ! fluid flow rate is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001839 +relationship: is_opposite_of PATO:0001839 ! increased fluid flow [Term] id: PATO:0001839 @@ -12549,7 +12550,7 @@ subset: value_slim synonym: "high flow" EXACT [] is_a: PATO:0002243 ! fluid flow rate is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001838 +relationship: is_opposite_of PATO:0001838 ! decreased fluid flow [Term] id: PATO:0001841 @@ -12577,7 +12578,7 @@ subset: value_slim synonym: "low acidity" EXACT [] is_a: PATO:0001842 ! acidity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001844 +relationship: is_opposite_of PATO:0001844 ! increased acidity [Term] id: PATO:0001844 @@ -12587,7 +12588,7 @@ subset: value_slim synonym: "high acidity" EXACT [] is_a: PATO:0001842 ! acidity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001843 +relationship: is_opposite_of PATO:0001843 ! decreased acidity [Term] id: PATO:0001845 @@ -12700,7 +12701,7 @@ def: "A shape quality in a bearer by virtue of the bearer's curving inward." [Wo subset: cell_quality subset: value_slim is_a: PATO:0002005 ! concavity -property_value: RO:0002604 PATO:0001355 +relationship: is_opposite_of PATO:0001355 ! convex [Term] id: PATO:0001858 @@ -12718,7 +12719,7 @@ subset: value_slim synonym: "high coordination" EXACT [] is_a: PATO:0000769 ! coordinated is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001860 +relationship: is_opposite_of PATO:0001860 ! decreased coordination [Term] id: PATO:0001860 @@ -12729,7 +12730,7 @@ subset: value_slim synonym: "low coordination" EXACT [] is_a: PATO:0000769 ! coordinated is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001859 +relationship: is_opposite_of PATO:0001859 ! increased coordination [Term] id: PATO:0001861 @@ -12740,7 +12741,7 @@ subset: value_slim synonym: "fascicled" EXACT [] is_a: PATO:0002013 ! fasciculation disjoint_from: PATO:0001959 ! defasciculated -property_value: RO:0002604 PATO:0001959 +relationship: is_opposite_of PATO:0001959 ! defasciculated [Term] id: PATO:0001862 @@ -12759,7 +12760,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0001309 ! duration -property_value: RO:0002604 PATO:0000389 +relationship: is_opposite_of PATO:0000389 ! acute [Term] id: PATO:0001865 @@ -12956,7 +12957,7 @@ subset: attribute_slim subset: disposition_slim is_a: PATO:0001018 ! physical quality disjoint_from: PATO:0001886 ! hydrophilicity -property_value: RO:0002604 PATO:0001886 +relationship: is_opposite_of PATO:0001886 ! hydrophilicity [Term] id: PATO:0001885 @@ -12965,7 +12966,7 @@ def: "A quality inhering in a bearer by virtue of the bearer's lacking affinity subset: disposition_slim subset: value_slim is_a: PATO:0001884 ! hydrophobicity -property_value: RO:0002604 PATO:0001887 +relationship: is_opposite_of PATO:0001887 ! hydrophilic [Term] id: PATO:0001886 @@ -12974,7 +12975,7 @@ def: "A physical quality inhering in a bearer by virtue the bearer's disposition subset: attribute_slim subset: disposition_slim is_a: PATO:0001018 ! physical quality -property_value: RO:0002604 PATO:0001884 +relationship: is_opposite_of PATO:0001884 ! hydrophobicity [Term] id: PATO:0001887 @@ -12983,7 +12984,7 @@ def: "A quality inhering in a bearer by virtue of the bearer's disposition to ha subset: disposition_slim subset: value_slim is_a: PATO:0001886 ! hydrophilicity -property_value: RO:0002604 PATO:0001885 +relationship: is_opposite_of PATO:0001885 ! hydrophobic [Term] id: PATO:0001888 @@ -13034,7 +13035,7 @@ def: "An odor quality of having decreased odor." [PATOC:GVG] subset: value_slim is_a: PATO:0001331 ! odorous is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001893 +relationship: is_opposite_of PATO:0001893 ! increased odor [Term] id: PATO:0001893 @@ -13043,7 +13044,7 @@ def: "An odor quality of having increased odor." [PATOC:GVG] subset: value_slim is_a: PATO:0001331 ! odorous is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001892 +relationship: is_opposite_of PATO:0001892 ! decreased odor [Term] id: PATO:0001894 @@ -13065,7 +13066,7 @@ name: unlumenized def: "A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances." [PATOC:MAH] subset: value_slim is_a: PATO:0002014 ! structure, cavities -property_value: RO:0002604 PATO:0001897 +relationship: is_opposite_of PATO:0001897 ! lumenized [Term] id: PATO:0001897 @@ -13074,7 +13075,7 @@ def: "A structure quality inhering in a bearer by virtue of the bearer's having comment: See GO term: GO:0031974 membrane-enclosed lumen [DEF:"The enclosed volume within a sealed membrane or between two sealed membranes"]. subset: value_slim is_a: PATO:0002014 ! structure, cavities -property_value: RO:0002604 PATO:0001896 +relationship: is_opposite_of PATO:0001896 ! unlumenized [Term] id: PATO:0001898 @@ -13083,7 +13084,7 @@ def: "A circumference which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0001648 ! circumference is_a: PATO:0001712 ! increased perimeter -property_value: RO:0002604 PATO:0001899 +relationship: is_opposite_of PATO:0001899 ! decreased circumference [Term] id: PATO:0001899 @@ -13092,7 +13093,7 @@ def: "A circumference which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0001648 ! circumference is_a: PATO:0001713 ! decreased perimeter -property_value: RO:0002604 PATO:0001898 +relationship: is_opposite_of PATO:0001898 ! increased circumference [Term] id: PATO:0001900 @@ -13100,7 +13101,7 @@ name: front def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction -property_value: RO:0002604 PATO:0001901 +relationship: is_opposite_of PATO:0001901 ! back [Term] id: PATO:0001901 @@ -13108,7 +13109,7 @@ name: back def: "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south." [PATOC:GVG] subset: value_slim is_a: PATO:0000039 ! direction -property_value: RO:0002604 PATO:0001900 +relationship: is_opposite_of PATO:0001900 ! front [Term] id: PATO:0001902 @@ -13292,7 +13293,7 @@ subset: value_slim synonym: "high fluorescence" EXACT [] is_a: PATO:0001290 ! fluorescent is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0001927 +relationship: is_opposite_of PATO:0001927 ! decreased fluorescence [Term] id: PATO:0001927 @@ -13302,7 +13303,7 @@ subset: value_slim synonym: "low fluorescence" EXACT [] is_a: PATO:0001290 ! fluorescent is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0001926 +relationship: is_opposite_of PATO:0001926 ! increased fluorescence [Term] id: PATO:0001928 @@ -13327,7 +13328,7 @@ name: variant shape def: "A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape." [PATOC:GVG] subset: value_slim is_a: PATO:0001929 ! variability of shape -property_value: RO:0002604 PATO:0001931 +relationship: is_opposite_of PATO:0001931 ! invariant shape [Term] id: PATO:0001931 @@ -13335,7 +13336,7 @@ name: invariant shape def: "A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape." [PATOC:GVG] subset: value_slim is_a: PATO:0001929 ! variability of shape -property_value: RO:0002604 PATO:0001930 +relationship: is_opposite_of PATO:0001930 ! variant shape [Term] id: PATO:0001932 @@ -13532,7 +13533,7 @@ subset: value_slim synonym: "low variability of size" EXACT [] is_a: PATO:0001956 ! variability of size is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0001958 +relationship: is_opposite_of PATO:0001958 ! increased variability of size [Term] id: PATO:0001958 @@ -13542,7 +13543,7 @@ subset: value_slim synonym: "high variability of size" EXACT [] is_a: PATO:0001956 ! variability of size is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0001957 +relationship: is_opposite_of PATO:0001957 ! decreased variability of size [Term] id: PATO:0001959 @@ -13550,7 +13551,7 @@ name: defasciculated def: "A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated." [PATOC:mw] subset: value_slim is_a: PATO:0002013 ! fasciculation -property_value: RO:0002604 PATO:0001861 +relationship: is_opposite_of PATO:0001861 ! fasciculated [Term] id: PATO:0001960 @@ -13665,7 +13666,7 @@ name: unserrated def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex." [ISBN:0881923214] subset: value_slim is_a: PATO:0001976 ! serration -property_value: RO:0002604 PATO:0001206 +relationship: is_opposite_of PATO:0001206 ! serrated [Term] id: PATO:0001976 @@ -13830,7 +13831,7 @@ synonym: "reduced" RELATED [] synonym: "subnumerary" RELATED [] is_a: PATO:0000467 ! present is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0000470 +relationship: is_opposite_of PATO:0000470 ! increased amount [Term] id: PATO:0001998 @@ -13871,7 +13872,7 @@ synonym: "has decreased number of" EXACT [] synonym: "has fewer physical parts of type" EXACT [] is_a: PATO:0001999 ! lacks parts or has fewer parts of type is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002002 +relationship: is_opposite_of PATO:0002002 ! has extra parts of type [Term] id: PATO:0002002 @@ -13887,7 +13888,7 @@ synonym: "having supernumerary physical parts" EXACT [] synonym: "increased number of" EXACT [] is_a: PATO:0002083 ! altered number of is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002001 +relationship: is_opposite_of PATO:0002001 ! has fewer parts of type [Term] id: PATO:0002003 @@ -13929,7 +13930,7 @@ subset: attribute_slim xref: Image:http\://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png is_a: PATO:0002266 ! 3-D shape relationship: has_cross_section PATO:0002006 ! 2-D shape -property_value: RO:0002604 PATO:0002008 +relationship: is_opposite_of PATO:0002008 ! concave 3-D shape [Term] id: PATO:0002008 @@ -13939,7 +13940,7 @@ subset: attribute_slim xref: Image:http\://en.wikipedia.org/wiki/Image\:Convex_polygon_illustration2.png is_a: PATO:0002266 ! 3-D shape relationship: has_part PATO:0001857 ! concave -property_value: RO:0002604 PATO:0002007 +relationship: is_opposite_of PATO:0002007 ! convex 3-D shape [Term] id: PATO:0002009 @@ -13997,14 +13998,14 @@ id: PATO:0002017 name: increased magnitude synonym: "high magnitude" EXACT [] is_a: PATO:0002016 ! magnitude -property_value: RO:0002604 PATO:0002018 +relationship: is_opposite_of PATO:0002018 ! decreased magnitude [Term] id: PATO:0002018 name: decreased magnitude synonym: "low magnitude" EXACT [] is_a: PATO:0002016 ! magnitude -property_value: RO:0002604 PATO:0002017 +relationship: is_opposite_of PATO:0002017 ! increased magnitude [Term] id: PATO:0002019 @@ -14067,7 +14068,7 @@ subset: hpo_slim subset: mpath_slim subset: value_slim is_a: PATO:0000057 ! occurrence -property_value: RO:0002604 PATO:0001818 +relationship: is_opposite_of PATO:0001818 ! progressive created_by: george gkoutos creation_date: 2008-12-18T12:49:19Z @@ -14091,7 +14092,7 @@ subset: value_slim synonym: "low osmolality" EXACT [] is_a: PATO:0002027 ! osmolality is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002029 +relationship: is_opposite_of PATO:0002029 ! increased osmolality created_by: george creation_date: 2009-01-27T10:55:33Z @@ -14104,7 +14105,7 @@ subset: value_slim synonym: "high osmolality" EXACT [] is_a: PATO:0002027 ! osmolality is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002028 +relationship: is_opposite_of PATO:0002028 ! decreased osmolality created_by: george creation_date: 2009-01-27T10:56:19Z @@ -14196,7 +14197,7 @@ def: "A structural quality inhering in a bearer whose structure which does not d subset: value_slim synonym: "not degenerate" EXACT [] is_a: PATO:0002037 ! degeneration -property_value: RO:0002604 PATO:0000639 +relationship: is_opposite_of PATO:0000639 ! degenerate created_by: george creation_date: 2009-02-03T11:14:54Z @@ -14206,7 +14207,7 @@ name: biconcave def: "A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces." [PATOC:GVG] subset: value_slim is_a: PATO:0001857 ! concave -property_value: RO:0002604 PATO:0002040 +relationship: is_opposite_of PATO:0002040 ! biconvex [Term] id: PATO:0002040 @@ -14215,7 +14216,7 @@ def: "A shape quality inhering in a bearer by virtue of the bearer's being conve subset: value_slim xref: Image:http\://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx is_a: PATO:0001355 ! convex -property_value: RO:0002604 PATO:0002039 +relationship: is_opposite_of PATO:0002039 ! biconcave [Term] id: PATO:0002041 @@ -14233,7 +14234,7 @@ subset: value_slim synonym: "low anterior-posterior diameter" EXACT [] is_a: PATO:0001715 ! decreased diameter is_a: PATO:0002041 ! anterior-posterior diameter -property_value: RO:0002604 PATO:0002043 +relationship: is_opposite_of PATO:0002043 ! increased anterior-posterior diameter [Term] id: PATO:0002043 @@ -14243,7 +14244,7 @@ subset: value_slim synonym: "high anterior-posterior diameter" EXACT [] is_a: PATO:0001714 ! increased diameter is_a: PATO:0002041 ! anterior-posterior diameter -property_value: RO:0002604 PATO:0002042 +relationship: is_opposite_of PATO:0002042 ! decreased anterior-posterior diameter [Term] id: PATO:0002044 @@ -14323,7 +14324,7 @@ def: "An occurrence which is relatively high." [PATOC:GVG] synonym: "increased incidence" EXACT [] is_a: PATO:0000057 ! occurrence is_a: PATO:0002304 ! increased process quality -property_value: RO:0002604 PATO:0002052 +relationship: is_opposite_of PATO:0002052 ! decreased occurrence created_by: George Gkoutos creation_date: 2009-03-26T11:10:11Z @@ -14334,7 +14335,7 @@ def: "An occurrence which is relatively low." [PATOC:GVG] synonym: "decreased incidence" EXACT [] is_a: PATO:0000057 ! occurrence is_a: PATO:0002302 ! decreased process quality -property_value: RO:0002604 PATO:0002051 +relationship: is_opposite_of PATO:0002051 ! increased occurrence created_by: George Gkoutos creation_date: 2009-03-26T11:12:35Z @@ -14366,7 +14367,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001362 ! fragile is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002056 +relationship: is_opposite_of PATO:0002056 ! decreased fragility created_by: George Gkoutos creation_date: 2009-03-26T04:01:37Z @@ -14378,7 +14379,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0001362 ! fragile is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002055 +relationship: is_opposite_of PATO:0002055 ! increased fragility created_by: George Gkoutos creation_date: 2009-03-26T04:02:14Z @@ -14389,7 +14390,7 @@ def: "An area which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0000586 ! increased size is_a: PATO:0001323 ! area -property_value: RO:0002604 PATO:0002058 +relationship: is_opposite_of PATO:0002058 ! decreased area created_by: George Gkoutos creation_date: 2009-03-30T04:11:43Z @@ -14400,7 +14401,7 @@ def: "An area which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0000587 ! decreased size is_a: PATO:0001323 ! area -property_value: RO:0002604 PATO:0002057 +relationship: is_opposite_of PATO:0002057 ! increased area created_by: George Gkoutos creation_date: 2009-03-30T04:12:11Z @@ -14489,7 +14490,7 @@ def: "A spatial pattern inhering in a bearer by virtue of the bearer's exhibitin subset: mpath_slim subset: value_slim is_a: PATO:0002067 ! stratification -property_value: RO:0002604 PATO:0002069 +relationship: is_opposite_of PATO:0002069 ! unstratified created_by: George Gkoutos creation_date: 2009-07-01T02:31:53Z @@ -14500,7 +14501,7 @@ def: "A spatial pattern inhering in a bearer by virtue of the bearer's lacking a subset: mpath_slim subset: value_slim is_a: PATO:0002067 ! stratification -property_value: RO:0002604 PATO:0002068 +relationship: is_opposite_of PATO:0002068 ! stratified created_by: George Gkoutos creation_date: 2009-07-01T02:33:41Z @@ -14525,7 +14526,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002070 ! affinity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002072 +relationship: is_opposite_of PATO:0002072 ! decreased affinity created_by: George Gkoutos creation_date: 2009-09-18T01:29:42Z @@ -14538,7 +14539,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002070 ! affinity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002071 +relationship: is_opposite_of PATO:0002071 ! increased affinity created_by: George Gkoutos creation_date: 2009-09-18T01:30:11Z @@ -14563,7 +14564,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002073 ! avidity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002075 +relationship: is_opposite_of PATO:0002075 ! decreased avidity created_by: George Gkoutos creation_date: 2009-09-18T01:45:56Z @@ -14576,7 +14577,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002073 ! avidity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002074 +relationship: is_opposite_of PATO:0002074 ! increased avidity created_by: George Gkoutos creation_date: 2009-09-18T01:45:59Z @@ -14801,7 +14802,7 @@ def: "A cellular quality inhering in a bearer by virtue of its stable specializa subset: mpath_slim subset: value_slim is_a: PATO:0001397 ! cellular potency -property_value: RO:0002604 PATO:0002100 +relationship: is_opposite_of PATO:0002100 ! undifferentiated created_by: george creation_date: 2009-10-05T12:58:54Z @@ -14812,7 +14813,7 @@ def: "A cellular quality inhering in a bearer by virtue of having not yet acquir subset: mpath_slim subset: value_slim is_a: PATO:0001397 ! cellular potency -property_value: RO:0002604 PATO:0002099 +relationship: is_opposite_of PATO:0002099 ! differentiated created_by: george creation_date: 2009-10-05T12:59:21Z @@ -14941,7 +14942,7 @@ subset: value_slim synonym: "permeable" RELATED [] synonym: "pierced" RELATED [] is_a: PATO:0002014 ! structure, cavities -property_value: RO:0002604 PATO:0001821 +relationship: is_opposite_of PATO:0001821 ! imperforate created_by: george creation_date: 2009-10-05T03:37:05Z @@ -15220,7 +15221,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002138 ! edibility disjoint_from: PATO:0002140 ! inedible -property_value: RO:0002604 PATO:0002140 +relationship: is_opposite_of PATO:0002140 ! inedible created_by: george creation_date: 2009-10-26T01:21:34Z @@ -15232,7 +15233,7 @@ subset: disposition_slim subset: relational_slim subset: value_slim is_a: PATO:0002138 ! edibility -property_value: RO:0002604 PATO:0002139 +relationship: is_opposite_of PATO:0002139 ! edible created_by: george creation_date: 2009-10-26T01:22:27Z @@ -15269,7 +15270,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002136 ! radiopacity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002145 +relationship: is_opposite_of PATO:0002145 ! decreased radiopacity created_by: george creation_date: 2009-10-30T03:30:39Z @@ -15281,7 +15282,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002136 ! radiopacity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002144 +relationship: is_opposite_of PATO:0002144 ! increased radiopacity created_by: george creation_date: 2009-10-30T03:31:31Z @@ -15303,7 +15304,7 @@ subset: value_slim synonym: "attenuated" EXACT [] is_a: PATO:0002146 ! virulence is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002148 +relationship: is_opposite_of PATO:0002148 ! increased virulence created_by: george creation_date: 2009-10-30T05:05:02Z @@ -15314,7 +15315,7 @@ def: "A virulence that is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0002146 ! virulence is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002147 +relationship: is_opposite_of PATO:0002147 ! reduced virulence created_by: george creation_date: 2009-10-30T05:13:10Z @@ -15706,7 +15707,7 @@ def: "A molecular quality that inheres in a molecular entity when it possesses a subset: value_slim is_a: PATO:0002190 ! aromaticity disjoint_from: PATO:0002192 ! non-aromatic -property_value: RO:0002604 PATO:0002192 +relationship: is_opposite_of PATO:0002192 ! non-aromatic created_by: George Gkoutos creation_date: 2010-03-10T03:25:59Z @@ -15716,7 +15717,7 @@ name: non-aromatic def: "A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic." [PATOC:JH] subset: value_slim is_a: PATO:0002190 ! aromaticity -property_value: RO:0002604 PATO:0002191 +relationship: is_opposite_of PATO:0002191 ! aromatic created_by: George Gkoutos creation_date: 2010-03-10T03:26:41Z @@ -15748,7 +15749,7 @@ def: "A quality which inheres in a molecular entity by virtue of the molecular e subset: value_slim is_a: PATO:0002193 ! electric charge disjoint_from: PATO:0002196 ! negative charge -property_value: RO:0002604 PATO:0002196 +relationship: is_opposite_of PATO:0002196 ! negative charge created_by: George Gkoutos creation_date: 2010-03-10T03:30:06Z @@ -15758,7 +15759,7 @@ name: negative charge def: "A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge." [PATOC:JH] subset: value_slim is_a: PATO:0002193 ! electric charge -property_value: RO:0002604 PATO:0002195 +relationship: is_opposite_of PATO:0002195 ! positive charge created_by: George Gkoutos creation_date: 2010-03-10T03:30:39Z @@ -16004,7 +16005,7 @@ def: "A quality inhering in a protein or a molecule by virtue of the bearer's ha subset: value_slim is_a: PATO:0002262 ! phosphorylation disjoint_from: PATO:0002263 ! dephosphorylated -property_value: RO:0002604 PATO:0002263 +relationship: is_opposite_of PATO:0002263 ! dephosphorylated created_by: george creation_date: 2010-07-09T01:50:14Z @@ -16016,7 +16017,7 @@ subset: value_slim synonym: "hyperphosphorylated" EXACT [] is_a: PATO:0002220 ! phosphorylated is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002222 +relationship: is_opposite_of PATO:0002222 ! decreased phosphorylation created_by: george creation_date: 2010-07-09T01:51:52Z @@ -16028,7 +16029,7 @@ subset: value_slim synonym: "hypophosporylated" EXACT [] is_a: PATO:0002220 ! phosphorylated is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002221 +relationship: is_opposite_of PATO:0002221 ! increased phosphorylation created_by: george creation_date: 2010-07-09T01:54:22Z @@ -16255,7 +16256,7 @@ subset: value_slim synonym: "increased force amplitude" EXACT [] is_a: PATO:0001035 ! force is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002246 +relationship: is_opposite_of PATO:0002246 ! decreased force created_by: george creation_date: 2010-08-04T11:12:20Z @@ -16267,7 +16268,7 @@ subset: value_slim synonym: "decreased force amplitude" EXACT [] is_a: PATO:0001035 ! force is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002245 +relationship: is_opposite_of PATO:0002245 ! increased force created_by: george creation_date: 2010-08-04T11:13:13Z @@ -16290,7 +16291,7 @@ subset: mpath_slim subset: value_slim is_a: PATO:0002247 ! degree of pigmentation disjoint_from: PATO:0002249 ! unpigmented -property_value: RO:0002604 PATO:0002249 +relationship: is_opposite_of PATO:0002249 ! unpigmented created_by: george creation_date: 2010-08-09T04:16:49Z @@ -16302,7 +16303,7 @@ subset: mpath_slim subset: value_slim synonym: "depigmented" EXACT [] is_a: PATO:0002247 ! degree of pigmentation -property_value: RO:0002604 PATO:0002248 +relationship: is_opposite_of PATO:0002248 ! pigmented created_by: george creation_date: 2010-08-09T04:17:04Z @@ -16315,7 +16316,7 @@ subset: value_slim synonym: "hyperpigmented" EXACT [] is_a: PATO:0002248 ! pigmented is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002251 +relationship: is_opposite_of PATO:0002251 ! decreased pigmentation created_by: george creation_date: 2010-08-09T04:17:19Z @@ -16328,7 +16329,7 @@ subset: value_slim synonym: "hypopigmented" EXACT [] is_a: PATO:0002248 ! pigmented is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002250 +relationship: is_opposite_of PATO:0002250 ! increased pigmentation created_by: george creation_date: 2010-08-09T04:17:37Z @@ -16452,7 +16453,7 @@ name: dephosphorylated def: "A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group." [url:http\://en.wikipedia.org/wiki/Dephosphorylation] subset: value_slim is_a: PATO:0002262 ! phosphorylation -property_value: RO:0002604 PATO:0002220 +relationship: is_opposite_of PATO:0002220 ! phosphorylated created_by: george creation_date: 2010-09-16T09:04:21Z @@ -16520,7 +16521,7 @@ subset: relational_slim subset: value_slim synonym: "accumulated" EXACT [] is_a: PATO:0002269 ! accumulation -property_value: RO:0002604 PATO:0002271 +relationship: is_opposite_of PATO:0002271 ! decreased accumulation created_by: george creation_date: 2010-10-26T02:00:20Z @@ -16531,7 +16532,7 @@ def: "An accumulation which is relative low." [PATOC:GVG] subset: relational_slim subset: value_slim is_a: PATO:0002269 ! accumulation -property_value: RO:0002604 PATO:0002270 +relationship: is_opposite_of PATO:0002270 ! increased accumulation created_by: george creation_date: 2010-10-26T02:04:45Z @@ -16632,7 +16633,7 @@ def: "A mobility which is relative high." [PATO:GVG] subset: value_slim is_a: PATO:0000299 ! mobile is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002283 +relationship: is_opposite_of PATO:0002283 ! decreased mobility created_by: george creation_date: 2011-03-09T09:16:03Z @@ -16643,7 +16644,7 @@ def: "A mobility which is relative low." [PATOC:GVG] subset: value_slim is_a: PATO:0000299 ! mobile is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002282 +relationship: is_opposite_of PATO:0002282 ! increased mobility created_by: george creation_date: 2011-03-09T09:16:47Z @@ -16663,7 +16664,7 @@ name: increased branchiness def: "Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:CVS] subset: value_slim is_a: PATO:0000402 ! branched -property_value: RO:0002604 PATO:0002286 +relationship: is_opposite_of PATO:0002286 ! decreased branchiness created_by: george creation_date: 2011-03-10T09:07:57Z @@ -16673,7 +16674,7 @@ name: decreased branchiness def: "Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:CVS] subset: value_slim is_a: PATO:0000402 ! branched -property_value: RO:0002604 PATO:0002285 +relationship: is_opposite_of PATO:0002285 ! increased branchiness created_by: george creation_date: 2011-03-10T09:08:37Z @@ -16684,7 +16685,7 @@ def: "An elasticity which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0001171 ! elastic is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002288 +relationship: is_opposite_of PATO:0002288 ! decreased elasticity created_by: George Gkoutos creation_date: 2011-03-30T11:50:21Z @@ -16695,7 +16696,7 @@ def: "An elasticity which is relatively low." [PATOC:GVG] subset: value_slim is_a: PATO:0001171 ! elastic is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002287 +relationship: is_opposite_of PATO:0002287 ! increased elasticity created_by: George Gkoutos creation_date: 2011-03-30T11:50:39Z @@ -16779,7 +16780,7 @@ def: "A cellular motility which is lower relative to the normal or average." [PA subset: value_slim is_a: PATO:0001488 ! cellular motility is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002298 +relationship: is_opposite_of PATO:0002298 ! increased cellular motility [Term] id: PATO:0002298 @@ -16788,7 +16789,7 @@ def: "A cellular motility which is higher relative to the normal or average." [P subset: value_slim is_a: PATO:0001488 ! cellular motility is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002297 +relationship: is_opposite_of PATO:0002297 ! decreased cellular motility [Term] id: PATO:0002299 @@ -16808,7 +16809,7 @@ name: increased quality def: "A quality that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0000069 ! deviation(from_normal) relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal -property_value: RO:0002604 PATO:0002301 +relationship: is_opposite_of PATO:0002301 ! decreased quality created_by: George Gkoutos creation_date: 2011-06-16T06:39:43Z @@ -16818,7 +16819,7 @@ name: decreased quality def: "A quality that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0000069 ! deviation(from_normal) relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal -property_value: RO:0002604 PATO:0002300 +relationship: is_opposite_of PATO:0002300 ! increased quality created_by: George Gkoutos creation_date: 2011-06-16T06:40:15Z @@ -16828,7 +16829,7 @@ name: decreased process quality def: "A quality of a process that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0001236 ! process quality is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0002304 +relationship: is_opposite_of PATO:0002304 ! increased process quality created_by: George Gkoutos creation_date: 2011-06-16T06:50:59Z @@ -16838,7 +16839,7 @@ name: decreased object quality def: "A quality of an object that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality is_a: PATO:0002301 ! decreased quality -property_value: RO:0002604 PATO:0002305 +relationship: is_opposite_of PATO:0002305 ! increased object quality created_by: George Gkoutos creation_date: 2011-06-16T06:51:54Z @@ -16848,7 +16849,7 @@ name: increased process quality def: "A quality of a process that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0001236 ! process quality is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0002302 +relationship: is_opposite_of PATO:0002302 ! decreased process quality created_by: George Gkoutos creation_date: 2011-06-16T06:53:08Z @@ -16858,7 +16859,7 @@ name: increased object quality def: "A quality of an object that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality is_a: PATO:0002300 ! increased quality -property_value: RO:0002604 PATO:0002303 +relationship: is_opposite_of PATO:0002303 ! decreased object quality created_by: George Gkoutos creation_date: 2011-06-16T06:54:01Z @@ -17007,7 +17008,7 @@ creation_date: 2011-10-12T12:49:06Z id: PATO:0002321 name: hypoelliptic is_a: PATO:0002318 ! superelliptic -property_value: RO:0002604 PATO:0002322 +relationship: is_opposite_of PATO:0002322 ! hyperelliptic created_by: George Gkoutos creation_date: 2011-10-12T12:50:59Z @@ -17015,7 +17016,7 @@ creation_date: 2011-10-12T12:50:59Z id: PATO:0002322 name: hyperelliptic is_a: PATO:0002318 ! superelliptic -property_value: RO:0002604 PATO:0002321 +relationship: is_opposite_of PATO:0002321 ! hypoelliptic created_by: George Gkoutos creation_date: 2011-10-12T12:51:19Z @@ -17067,7 +17068,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0001475 ! increased position is_a: PATO:0002326 ! angle -property_value: RO:0002604 PATO:0002328 +relationship: is_opposite_of PATO:0002328 ! decreased angle to created_by: George Gkoutos creation_date: 2011-11-23T12:06:38Z @@ -17079,7 +17080,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0001476 ! decreased position is_a: PATO:0002326 ! angle -property_value: RO:0002604 PATO:0002327 +relationship: is_opposite_of PATO:0002327 ! increased angle to created_by: George Gkoutos creation_date: 2011-11-23T12:06:54Z @@ -17108,7 +17109,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer exhibiting subset: value_slim synonym: "resinous" RELATED [] is_a: PATO:0001431 ! adhesivity -property_value: RO:0002604 PATO:0002332 +relationship: is_opposite_of PATO:0002332 ! non-adhesive created_by: gkoutos creation_date: 2012-01-31T12:28:16Z @@ -17119,7 +17120,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer not exhibi subset: value_slim synonym: "non-resinous" RELATED [] is_a: PATO:0001431 ! adhesivity -property_value: RO:0002604 PATO:0002331 +relationship: is_opposite_of PATO:0002331 ! adhesive created_by: gkoutos creation_date: 2012-01-31T12:28:57Z @@ -17130,7 +17131,7 @@ def: "A adhesivity which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0002305 ! increased object quality is_a: PATO:0002331 ! adhesive -property_value: RO:0002604 PATO:0002334 +relationship: is_opposite_of PATO:0002334 ! decreased adhesivity created_by: gkoutos creation_date: 2012-01-31T12:32:43Z @@ -17140,7 +17141,7 @@ name: decreased adhesivity def: "A adhesivity which is relatively low." [PATOC:GVG] is_a: PATO:0002303 ! decreased object quality is_a: PATO:0002331 ! adhesive -property_value: RO:0002604 PATO:0002333 +relationship: is_opposite_of PATO:0002333 ! increased adhesivity created_by: gkoutos creation_date: 2012-01-31T12:42:22Z @@ -17321,7 +17322,7 @@ name: active def: "A quality of an physical object that is currently realizing one of its functions." [PATOC:RH] subset: attribute_slim is_a: PATO:0002353 ! activation quality -property_value: RO:0002604 PATO:0002355 +relationship: is_opposite_of PATO:0002355 ! inactive created_by: gkoutos creation_date: 2012-01-31T04:52:04Z @@ -17331,7 +17332,7 @@ name: inactive def: "A quality of a physical object that is currently realizing none of its functions." [PATOC:RH] subset: attribute_slim is_a: PATO:0002353 ! activation quality -property_value: RO:0002604 PATO:0002354 +relationship: is_opposite_of PATO:0002354 ! active created_by: gkoutos creation_date: 2012-01-31T04:52:14Z @@ -17392,7 +17393,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002305 ! increased object quality is_a: PATO:0002360 ! tendency -property_value: RO:0002604 PATO:0002362 +relationship: is_opposite_of PATO:0002362 ! decreased tendency created_by: gkoutos creation_date: 2012-03-16T06:31:57Z @@ -17405,7 +17406,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0002303 ! decreased object quality is_a: PATO:0002360 ! tendency -property_value: RO:0002604 PATO:0002361 +relationship: is_opposite_of PATO:0002361 ! increased tendency created_by: gkoutos creation_date: 2012-03-16T06:32:57Z @@ -17424,7 +17425,7 @@ name: shortened def: "A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width." [PATOC:GVG] subset: value_slim is_a: PATO:0000052 ! shape -property_value: RO:0002604 PATO:0001154 +relationship: is_opposite_of PATO:0001154 ! elongated created_by: gkoutos creation_date: 2012-04-18T06:31:29Z @@ -17534,7 +17535,7 @@ def: "A structure quality inhering in a bearer by virtue of the bearer's being f subset: value_slim synonym: "air-filled" EXACT [] is_a: PATO:0002014 ! structure, cavities -property_value: RO:0002604 PATO:0002377 +relationship: is_opposite_of PATO:0002377 ! uninflated created_by: gkoutos creation_date: 2012-07-05T02:55:10Z @@ -17544,7 +17545,7 @@ name: uninflated def: "A structure quality inhering in a bearer by virtue of the bearer's being not filed with air." [PATOC:CVS] subset: value_slim is_a: PATO:0002014 ! structure, cavities -property_value: RO:0002604 PATO:0002376 +relationship: is_opposite_of PATO:0002376 ! inflated created_by: gkoutos creation_date: 2012-07-05T02:56:07Z @@ -17592,7 +17593,7 @@ def: "A waxiness which is relatively high." [PATOC:GVG] subset: value_slim is_a: PATO:0002305 ! increased object quality is_a: PATO:0002381 ! waxiness -property_value: RO:0002604 PATO:0002383 +relationship: is_opposite_of PATO:0002383 ! decreased waxiness created_by: gkoutos creation_date: 2012-07-05T03:18:03Z @@ -17602,7 +17603,7 @@ name: decreased waxiness def: "A waxiness which is relatively low." [] is_a: PATO:0002303 ! decreased object quality is_a: PATO:0002381 ! waxiness -property_value: RO:0002604 PATO:0002382 +relationship: is_opposite_of PATO:0002382 ! increased waxiness created_by: gkoutos creation_date: 2012-07-05T03:18:14Z @@ -17701,7 +17702,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0000515 ! tolerant to is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002394 +relationship: is_opposite_of PATO:0002394 ! decreased tolerance to created_by: gkoutos creation_date: 2012-11-15T05:32:07Z @@ -17713,7 +17714,7 @@ subset: relational_slim subset: value_slim is_a: PATO:0000515 ! tolerant to is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002393 +relationship: is_opposite_of PATO:0002393 ! increased tolerance to created_by: gkoutos creation_date: 2012-11-15T05:33:05Z @@ -18169,7 +18170,7 @@ name: ornamented def: "A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures." [PATOC:AD] subset: value_slim is_a: PATO:0002440 ! ornamentation -property_value: RO:0002604 PATO:0002442 +relationship: is_opposite_of PATO:0002442 ! unornamented created_by: gkoutos creation_date: 2013-01-29T10:59:42Z @@ -18179,7 +18180,7 @@ name: unornamented def: "A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures." [PATOC:AD] subset: value_slim is_a: PATO:0002440 ! ornamentation -property_value: RO:0002604 PATO:0002441 +relationship: is_opposite_of PATO:0002441 ! ornamented created_by: gkoutos creation_date: 2013-01-29T11:00:20Z @@ -18274,7 +18275,7 @@ name: decondensed def: "A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed." [PATOC:JL] subset: value_slim is_a: PATO:0000141 ! structure -property_value: RO:0002604 PATO:0001485 +relationship: is_opposite_of PATO:0001485 ! condensed created_by: gkoutos creation_date: 2013-04-08T08:43:31Z @@ -18450,7 +18451,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer's increase subset: value_slim is_a: PATO:0002242 ! velocity is_a: PATO:0002305 ! increased object quality -property_value: RO:0002604 PATO:0002472 +relationship: is_opposite_of PATO:0002472 ! decreased velocity created_by: gkoutos creation_date: 2013-09-15T12:03:45Z @@ -18461,7 +18462,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer's decrease subset: value_slim is_a: PATO:0002242 ! velocity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0002471 +relationship: is_opposite_of PATO:0002471 ! increased velocity created_by: gkoutos creation_date: 2013-09-15T12:05:06Z @@ -18646,7 +18647,7 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "anterodorsally directed" EXACT [] is_a: PATO:0000133 ! orientation -property_value: RO:0002604 PATO:0002526 +relationship: is_opposite_of PATO:0002526 ! anterodistal orientation created_by: gkoutos creation_date: 2013-10-10T05:12:15Z @@ -18677,7 +18678,7 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "distally directed" EXACT [] is_a: PATO:0000133 ! orientation -property_value: RO:0002604 PATO:0002495 +relationship: is_opposite_of PATO:0002495 ! dorsal orientation created_by: gkoutos creation_date: 2013-10-10T05:14:37Z @@ -18688,7 +18689,7 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "dorsally directed" EXACT [] is_a: PATO:0000133 ! orientation -property_value: RO:0002604 PATO:0002494 +relationship: is_opposite_of PATO:0002494 ! distal orientation created_by: gkoutos creation_date: 2013-10-10T05:15:24Z @@ -18779,7 +18780,7 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having subset: value_slim synonym: "posterodorsally directed" EXACT [] is_a: PATO:0000133 ! orientation -property_value: RO:0002604 PATO:0002527 +relationship: is_opposite_of PATO:0002527 ! posterodistal orientation created_by: gkoutos creation_date: 2013-10-10T05:19:36Z @@ -18987,7 +18988,7 @@ name: anterodistal orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally." [PATOC:EJS] synonym: "antero-distal orientation" EXACT [] is_a: PATO:0000133 ! orientation -property_value: RO:0002604 PATO:0002491 +relationship: is_opposite_of PATO:0002491 ! anterodorsal orientation created_by: segerdel creation_date: 2014-03-11T11:28:39Z @@ -18997,7 +18998,7 @@ name: posterodistal orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally." [PATOC:EJS] synonym: "postero-distal orientation" EXACT [] is_a: PATO:0000133 ! orientation -property_value: RO:0002604 PATO:0002504 +relationship: is_opposite_of PATO:0002504 ! posterodorsal orientation created_by: segerdel creation_date: 2014-03-11T11:29:22Z @@ -19285,7 +19286,7 @@ name: complete structure def: "A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts." [PATOC:WD] subset: value_slim is_a: PATO:0000141 ! structure -property_value: RO:0002604 PATO:0005013 +relationship: is_opposite_of PATO:0005013 ! incomplete structure created_by: wasila.dahdul creation_date: 2014-09-25T15:11:47Z @@ -19295,7 +19296,7 @@ name: incomplete structure def: "A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities." [PATOC:WD] subset: value_slim is_a: PATO:0000141 ! structure -property_value: RO:0002604 PATO:0005012 +relationship: is_opposite_of PATO:0005012 ! complete structure created_by: wasila.dahdul creation_date: 2014-09-25T15:12:35Z @@ -19478,7 +19479,7 @@ def: "A decrease in the ability of a process to produce its output." [PATOC:Port subset: value_slim is_a: PATO:0002302 ! decreased process quality is_a: PATO:0015002 ! process efficacy -property_value: RO:0002604 PATO:0015004 +relationship: is_opposite_of PATO:0015004 ! increased efficacy created_by: cjm [Term] @@ -19488,7 +19489,7 @@ def: "A increase in the ability of a process to produce its output." [PATOC:Port subset: value_slim is_a: PATO:0002304 ! increased process quality is_a: PATO:0015002 ! process efficacy -property_value: RO:0002604 PATO:0015003 +relationship: is_opposite_of PATO:0015003 ! decreased efficacy created_by: cjm [Term] @@ -19540,7 +19541,7 @@ subset: value_slim synonym: "humid" RELATED [] is_a: PATO:0002305 ! increased object quality is_a: PATO:0015009 ! humidity -property_value: RO:0002604 PATO:0015011 +relationship: is_opposite_of PATO:0015011 ! decreased humidity [Term] id: PATO:0015011 @@ -19549,7 +19550,7 @@ def: "An decrease in humidity." [https://github.com/pato-ontology/pato/issues/90 subset: value_slim is_a: PATO:0002303 ! decreased object quality is_a: PATO:0015009 ! humidity -property_value: RO:0002604 PATO:0015010 +relationship: is_opposite_of PATO:0015010 ! increased humidity [Term] id: PATO:0015012 @@ -19573,7 +19574,7 @@ subset: value_slim synonym: "illuminated" RELATED [] is_a: PATO:0002305 ! increased object quality is_a: PATO:0015013 ! degree of illumination -property_value: RO:0002604 PATO:0015015 +relationship: is_opposite_of PATO:0015015 ! decreased degree of illumination [Term] id: PATO:0015015 @@ -19582,7 +19583,7 @@ def: "An decrease in illumination." [https://github.com/pato-ontology/pato/issue subset: value_slim is_a: PATO:0002303 ! decreased object quality is_a: PATO:0015013 ! degree of illumination -property_value: RO:0002604 PATO:0015014 +relationship: is_opposite_of PATO:0015014 ! increased degree of illumination [Term] id: PATO:0015016 @@ -19634,7 +19635,7 @@ subset: value_slim synonym: "combustible" EXACT [] is_a: PATO:0002305 ! increased object quality is_a: PATO:0015021 ! combustibility -property_value: RO:0002604 PATO:0015023 +relationship: is_opposite_of PATO:0015023 ! decreased combustibility [Term] id: PATO:0015023 @@ -19644,7 +19645,7 @@ subset: value_slim synonym: "noncombustible" RELATED [] is_a: PATO:0002303 ! decreased object quality is_a: PATO:0015021 ! combustibility -property_value: RO:0002604 PATO:0015022 +relationship: is_opposite_of PATO:0015022 ! increased combustibility [Term] id: PATO:0015024 @@ -19661,7 +19662,7 @@ def: "An decrease in porosity." [https://github.com/pato-ontology/pato/issues/11 subset: value_slim is_a: PATO:0000973 ! porosity is_a: PATO:0002303 ! decreased object quality -property_value: RO:0002604 PATO:0015024 +relationship: is_opposite_of PATO:0015024 ! increased porosity [Term] id: PATO:0015026 @@ -19688,7 +19689,7 @@ subset: disposition_slim subset: value_slim is_a: PATO:0002303 ! decreased object quality is_a: PATO:0015026 ! stability -property_value: RO:0002604 PATO:0015027 +relationship: is_opposite_of PATO:0015027 ! increased stability [Term] id: PATO:0015029 @@ -19746,7 +19747,7 @@ def: "A physical quality inhering in a bearer by virtue of the bearer not being synonym: "undrinkable" EXACT [] is_a: PATO:0025000 ! potability disjoint_from: PATO:0025002 ! potable -property_value: RO:0002604 PATO:0025002 +relationship: is_opposite_of PATO:0025002 ! potable created_by: pbuttigieg creation_date: 2015-09-01T16:18:57Z @@ -19756,7 +19757,7 @@ name: potable def: "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration." [Wikipedia:https\://en.wikipedia.org/wiki/Drinking_water] synonym: "drinkable" EXACT [] is_a: PATO:0025000 ! potability -property_value: RO:0002604 PATO:0025001 +relationship: is_opposite_of PATO:0025001 ! non-potable created_by: pbuttigieg creation_date: 2015-09-01T16:19:02Z @@ -19821,8 +19822,8 @@ id: PATO:0040000 name: heterotaxic def: "An oriented quality inhering in a bearer by virtue of the bearer's being abnormally placed or arranged." [http://medical-dictionary.thefreedictionary.com/heterotaxic] is_a: PATO:0000625 ! inverted -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-05-21T22:44:38Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040001 @@ -19830,8 +19831,8 @@ name: ring-shaped def: "Shaped like a ring" [https://orcid.org/0000-0002-6601-2165] synonym: "annular" EXACT [] is_a: PATO:0000947 ! elliptic -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T03:56:53Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040002 @@ -19839,24 +19840,24 @@ name: originates from def: "A positional quality inhering in a bearer by virtue of some aspect of that bearer beginning from a position on another entity." [] subset: relational_slim is_a: PATO:0000140 ! position -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T04:10:53Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040003 name: pathogenicity def: "The ability of a pathogen to produce an infectious disease or disorder in an another organism." [https://orcid.org/0000-0001-8941-3984] is_a: PATO:0001995 ! organismal quality -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:24:52Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040004 name: plush def: "A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness." [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0003-4606-0597] is_a: PATO:0000150 ! texture -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:39:30Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040005 @@ -19864,40 +19865,40 @@ name: posteroventral orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally." [https://orcid.org/0000-0003-3162-7490] synonym: "posteroventrally oriented" EXACT [] is_a: PATO:0000133 ! orientation -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T22:54:16Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040006 name: crown like def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:09:59Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040007 name: shell shaped def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:12:47Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040008 name: fringed def: "A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/fringe] is_a: PATO:0002267 ! edge shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:15:10Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040009 name: bowl shaped def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0002008 ! concave 3-D shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:17:01Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040010 @@ -19905,8 +19906,8 @@ name: mobile relative to def: "Mobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] comment: For example, distinct anteroposterior mobility of palatine relative to mesethmoid. is_a: PATO:0000004 ! mobility -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:20:08Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040011 @@ -19914,8 +19915,8 @@ name: immobile relative to def: "Immobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] comment: For example: distinct anteroposterior immobility of palatine relative to mesethmoid. is_a: PATO:0000004 ! mobility -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:21:07Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040012 @@ -19923,8 +19924,8 @@ name: plug shaped def: "A shape that is in the form of a plug, being tube-like and expanded on one end." [https://orcid.org/0000-0003-3162-7490] synonym: "plug like" EXACT [] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:24:41Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040013 @@ -19932,8 +19933,8 @@ name: dorsomedial orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially." [https://orcid.org/0000-0003-3162-7490] synonym: "dorsomedially directed" EXACT [] is_a: PATO:0000133 ! orientation -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:27:57Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040014 @@ -19944,8 +19945,8 @@ synonym: "band-like" EXACT [] synonym: "strip like" EXACT [] synonym: "strip-like" EXACT [] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:31:51Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040015 @@ -19955,16 +19956,16 @@ synonym: "trough like" EXACT [] synonym: "trough-like" EXACT [] synonym: "trough-shaped" EXACT [] is_a: PATO:0002008 ! concave 3-D shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:35:51Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040016 name: pentagonal def: "A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/pentagonal] is_a: PATO:0002006 ! 2-D shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:39:48Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040017 @@ -19972,39 +19973,39 @@ name: dysplastic growth def: "A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal." [https://www.cancer.gov/publications/dictionaries/cancer-terms/def/dysplasia] synonym: "dysgenesis" NARROW [] is_a: PATO:0001433 ! growth quality of occurrent -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T19:01:51Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040019 name: fibrotic def: "Fibrosis is the formation of excess fibrous connective tissue in an organ or tissue in a reparative or reactive process." [https://en.wikipedia.org/wiki/Fibrosis] is_a: PATO:0000025 ! composition -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T23:16:17Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040020 name: spayed female def: "Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal." [] is_a: PATO:0000383 ! female -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-16T22:52:49Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040021 name: unpaired def: "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0000467 ! present -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040022 name: flared def: "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape." [] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:49:07Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040023 @@ -20013,8 +20014,8 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having synonym: "disto-medial orientation" EXACT [] synonym: "distomedial" EXACT [] is_a: PATO:0000133 ! orientation -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:54:33Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040024 @@ -20022,14 +20023,14 @@ name: bilaterally paired def: "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism." [https://orcid.org/0000-0003-3162-7490] synonym: "paired" BROAD [] is_a: PATO:0000467 ! present -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040025 name: lesioned def: "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present." [NCIT:C3824] is_a: PATO:0000141 ! structure -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040026 @@ -20979,7 +20980,7 @@ name: north def: "North is one of the four compass points or cardinal directions. It is the opposite of south and is perpendicular to east and west." [Wikipedia:http\://en.wikipedia.org/wiki/North] subset: value_slim is_a: PATO:0045090 ! cardinal direction -property_value: RO:0002604 PATO:0045093 +relationship: is_opposite_of PATO:0045093 ! south created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20989,7 +20990,7 @@ name: east def: "East is one of the four cardinal directions or points of the compass. It is the opposite direction from west." [Wikipedia:http\://en.wikipedia.org/wiki/East] subset: value_slim is_a: PATO:0045090 ! cardinal direction -property_value: RO:0002604 PATO:0045094 +relationship: is_opposite_of PATO:0045094 ! west created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -20999,7 +21000,7 @@ name: south def: "South is one of the four cardinal directions or compass points. South is the polar opposite of north and is perpendicular to east and west." [Wikipedia:http\://en.wikipedia.org/wiki/South] subset: value_slim is_a: PATO:0045090 ! cardinal direction -property_value: RO:0002604 PATO:0045091 +relationship: is_opposite_of PATO:0045091 ! north created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21009,7 +21010,7 @@ name: west def: "West is one of the four cardinal directions or points of the compass. It is the opposite direction from east." [Wikipedia:http\://en.wikipedia.org/wiki/West] subset: value_slim is_a: PATO:0045090 ! cardinal direction -property_value: RO:0002604 PATO:0045092 +relationship: is_opposite_of PATO:0045092 ! east created_by: Luke Slater creation_date: 2017-12-22T14:16:43Z @@ -21067,6 +21068,47 @@ is_a: PATO:0060001 ! sex-specific created_by: http://orcid.org/0000-0002-1373-1705 creation_date: 2019-08-23T08:51:22Z +[Typedef] +id: RO:0000057 +name: has participant +def: "a relation between a process and a continuant, in which the continuant is somehow involved in the process" [] +property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:has_participant xsd:string +property_value: IAO:0000111 "has participant" xsd:string +property_value: IAO:0000112 "this blood coagulation has participant this blood clot" xsd:string +property_value: IAO:0000112 "this investigation has participant this investigator" xsd:string +property_value: IAO:0000112 "this process has participant this input material (or this output material)" xsd:string +property_value: IAO:0000116 "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." xsd:string +property_value: IAO:0000118 "has_participant" xsd:string +holds_over_chain: has_part RO:0000057 + +[Typedef] +id: bearer_of +name: bearer of +namespace: uberon +def: "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence" [] +xref: RO:0000053 +property_value: IAO:0000111 "bearer of" xsd:string +property_value: IAO:0000112 "this apple is bearer of this red color" xsd:string +property_value: IAO:0000112 "this vase is bearer of this fragility" xsd:string +property_value: IAO:0000116 "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." xsd:string +property_value: IAO:0000118 "bearer_of" xsd:string +property_value: IAO:0000118 "is bearer of" xsd:string +property_value: RO:0001900 RO:0001901 + +[Typedef] +id: composed_primarily_of +name: composed primarily of +namespace: uberon +def: "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y." [] +def: "x composed_primarily_of y iff: more than half of the mass of x is made from parts of y" [] +subset: ro-eco +xref: RO:0002473 +property_value: IAO:0000112 "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/22293552 +property_value: RO:0001900 RO:0001901 +is_a: has_part ! has part + [Typedef] id: correlates_with name: correlates_with @@ -21098,6 +21140,20 @@ range: PATO:0000001 ! quality created_by: cjm creation_date: 2009-08-26T02:50:08Z +[Typedef] +id: has_component +name: has component +namespace: uberon +def: "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] +subset: ro-eco +xref: RO:0002180 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." xsd:string +property_value: IAO:0000232 "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." xsd:string +property_value: RO:0001900 RO:0001901 +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:Componency +is_a: has_part ! has part + [Typedef] id: has_cross_section name: has_cross_section @@ -21132,7 +21188,9 @@ is_a: has_ratio_quality ! has_ratio_quality id: has_part name: has part name: has_part +namespace: chebi_ontology namespace: external +namespace: uberon def: "a core relation that holds between a whole and its part" [] def: "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2." [PATOC:CJM] comment: We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. @@ -21146,6 +21204,7 @@ property_value: IAO:0000116 "Occurrents are not subject to change and so parthoo property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string property_value: IAO:0000118 "has_part" xsd:string property_value: RO:0001900 RO:0001901 +is_cyclic: false is_transitive: true [Typedef] @@ -21188,6 +21247,17 @@ id: is_measurement_of name: is_measurement_of namespace: pato.ontology +[Typedef] +id: is_opposite_of +name: is opposite of +name: is_opposite_of +def: "x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x)." [] +xref: RO:0002604 +property_value: IAO:0000112 "'anterior end of organism' is-opposite-of 'posterior end of organism'" xsd:string +property_value: IAO:0000112 "'increase in temperature' is-opposite-of 'decrease in temperature'" xsd:string +is_metadata_tag: true +is_class_level: true + [Typedef] id: is_unit_of name: is_unit_of @@ -21198,6 +21268,7 @@ id: part_of name: part of name: part_of namespace: external +namespace: uberon def: "a core relation that holds between a part and its whole" [] xref: BFO:0000050 property_value: IAO:0000111 "is part of" xsd:string diff --git a/pato-simple.owl b/pato-simple.owl index 97aa9ad5..3803f01e 100644 --- a/pato-simple.owl +++ b/pato-simple.owl @@ -11,7 +11,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + OBO-Edit 2.3.1 07:02:2018 10:27 quality @@ -44,9 +44,43 @@ + + + + + + - + + definition + + The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions. + 2012-04-05: +Barry Smith + +The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. + +Can you fix to something like: + +A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. + +Alan Ruttenberg + +Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. + +On the specifics of the proposed definition: + +We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. + +Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. + +We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + definition + definition + @@ -56,15 +90,39 @@ + + + + + + + + + + + + - + + has obsolescence reason + Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification. + PERSON:Alan Ruttenberg + PERSON:Melanie Courtot + has obsolescence reason + + + + + + + @@ -76,7 +134,16 @@ - + + term replaced by + + Add as annotation triples in the granting ontology + Use on obsolete terms, relating the term to another term that can be used as a substitute + Person:Alan Ruttenberg + Person:Alan Ruttenberg + term replaced by + term replaced by + @@ -88,7 +155,19 @@ - + + 'anterior end of organism' is-opposite-of 'posterior end of organism' + 'increase in temperature' is-opposite-of 'decrease in temperature' + x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x). + RO:0002604 + quality + is_opposite_of + true + true + is_opposite_of + is opposite of + is_opposite_of + @@ -188,15 +267,15 @@ - + - + - + - + @@ -208,9 +287,17 @@ + + + + + + - + + consider + @@ -226,45 +313,79 @@ + + + + + + + + + + + + - + + has_alternative_id + - + + has_broad_synonym + - + + database_cross_reference + - + + has_exact_synonym + - + + has_narrow_synonym + + + + + + + + has_obo_format_version + - + + has_obo_namespace + - + + has_related_synonym + @@ -276,13 +397,59 @@ - + + in_subset + + + + + + + + + + + + + + + + + + + + + + + + + - + + shorthand + + + + + + + + + + + + + + + + + + + @@ -324,6 +491,7 @@ A continuant cannot be part of an occurrent: use 'participates in'. An BFO:0000050 external quality + uberon part_of part_of part of @@ -354,9 +522,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. has_part BFO:0000051 + chebi_ontology external quality + uberon has_part + false has_part We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. has part @@ -372,6 +543,89 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + bearer of + this apple is bearer of this red color + this vase is bearer of this fragility + a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence + A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist. + bearer_of + is bearer of + + RO:0000053 + uberon + bearer_of + bearer_of + bearer of + bearer of + + + + + + + + + + + + has participant + this blood coagulation has participant this blood clot + this investigation has participant this investigator + this process has participant this input material (or this output material) + a relation between a process and a continuant, in which the continuant is somehow involved in the process + Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time. + has_participant + http://www.obofoundry.org/ro/#OBO_REL:has_participant + has participant + + + + + + + + + + w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type. + The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity. + For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit. + + RO:0002180 + uberon + has_component + + has_component + has component + has component + + + + + + + + + + 'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate' + x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y. + x composed_primarily_of y iff: more than half of the mass of x is made from parts of y + Chris Mungall + + + RO:0002473 + uberon + RO:0002473 + composed_primarily_of + + composed_primarily_of + composed primarily of + + + + @@ -708,6 +962,7 @@ Association is weaker than correlation or proportionality. These relations may b A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities quality (PATO) PATO:0000072 + trait quality PATO:0000001 quality @@ -1757,7 +2012,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. + A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. quality PATO:0000069 @@ -1766,7 +2021,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. + A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. PATOC:GVG @@ -2377,7 +2632,7 @@ Association is weaker than correlation or proportionality. These relations may b - A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. + A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. quality PATO:0000117 @@ -2387,7 +2642,7 @@ Association is weaker than correlation or proportionality. These relations may b - A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. + A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. WordNet:WordNet @@ -39881,7 +40136,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality of an object that has a value that is decreased compared to normal or average. + A quality of an object that has a value that is decreased compared to normal or average. George Gkoutos 2011-06-16T06:51:54Z @@ -39892,7 +40147,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality of an object that has a value that is decreased compared to normal or average. + A quality of an object that has a value that is decreased compared to normal or average. PATOC:GVG @@ -46664,8 +46919,8 @@ height'). An oriented quality inhering in a bearer by virtue of the bearer's being abnormally placed or arranged. - 2018-05-21T22:44:38Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040000 heterotaxic @@ -46684,8 +46939,8 @@ height'). Shaped like a ring - 2018-05-24T03:56:53Z + http://orcid.org/0000-0001-5208-3432 annular quality PATO:0040001 @@ -46705,8 +46960,8 @@ height'). A positional quality inhering in a bearer by virtue of some aspect of that bearer beginning from a position on another entity. - 2018-05-24T04:10:53Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040002 @@ -46720,8 +46975,8 @@ height'). The ability of a pathogen to produce an infectious disease or disorder in an another organism. - 2018-08-02T04:24:52Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040003 pathogenicity @@ -46740,8 +46995,8 @@ height'). A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness. - 2018-08-02T04:39:30Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040004 plush @@ -46761,8 +47016,8 @@ height'). An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally. - 2018-11-12T22:54:16Z + http://orcid.org/0000-0001-5208-3432 posteroventrally oriented quality PATO:0040005 @@ -46782,8 +47037,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown. - 2018-11-12T18:09:59Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040006 crown like @@ -46802,8 +47057,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell. - 2018-11-12T18:12:47Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040007 shell shaped @@ -46822,8 +47077,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band. - 2018-11-12T18:15:10Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040008 fringed @@ -46843,8 +47098,8 @@ height'). A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl. - 2018-11-12T18:17:01Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040009 bowl shaped @@ -46863,8 +47118,8 @@ height'). Mobility relative to a second entity. - 2018-11-12T18:20:08Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040010 For example, distinct anteroposterior mobility of palatine relative to mesethmoid. @@ -46884,8 +47139,8 @@ height'). Immobility relative to a second entity. - 2018-11-12T18:21:07Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040011 For example: distinct anteroposterior immobility of palatine relative to mesethmoid. @@ -46905,8 +47160,8 @@ height'). A shape that is in the form of a plug, being tube-like and expanded on one end. - 2018-11-12T18:24:41Z + http://orcid.org/0000-0001-5208-3432 plug like quality PATO:0040012 @@ -46926,8 +47181,8 @@ height'). An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially. - 2018-11-12T18:27:57Z + http://orcid.org/0000-0001-5208-3432 dorsomedially directed quality PATO:0040013 @@ -46947,8 +47202,8 @@ height'). A shape that is in the form of a narrow strip encircling an object. - 2018-11-12T18:31:51Z + http://orcid.org/0000-0001-5208-3432 band like band-like strip like @@ -46972,8 +47227,8 @@ height'). A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling that of a trough, being narrow, long, and boxlike in shape. - 2018-11-12T18:35:51Z + http://orcid.org/0000-0001-5208-3432 trough like trough-like trough-shaped @@ -46996,8 +47251,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides. - 2018-11-12T18:39:48Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040016 pentagonal @@ -47017,8 +47272,8 @@ height'). A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal. - 2018-11-12T19:01:51Z + http://orcid.org/0000-0001-5208-3432 dysgenesis quality PATO:0040017 @@ -47038,8 +47293,8 @@ height'). Fibrosis is the formation of excess fibrous connective tissue in an organ or tissue in a reparative or reactive process. - 2018-11-12T23:16:17Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040019 fibrotic @@ -47058,8 +47313,8 @@ height'). Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal. - 2018-11-16T22:52:49Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040020 spayed female @@ -47072,7 +47327,7 @@ height'). The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.. - + http://orcid.org/0000-0001-5208-3432 quality PATO:0040021 unpaired @@ -47091,8 +47346,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape. - 2018-11-19T21:49:07Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040022 flared @@ -47105,8 +47360,8 @@ height'). An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body. - 2018-11-19T21:54:33Z + http://orcid.org/0000-0001-5208-3432 disto-medial orientation distomedial quality @@ -47127,7 +47382,7 @@ height'). The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism. - + http://orcid.org/0000-0001-5208-3432 paired quality PATO:0040024 @@ -47147,7 +47402,7 @@ height'). A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present. - + http://orcid.org/0000-0001-5208-3432 quality PATO:0040025 lesioned @@ -48919,6 +49174,27 @@ height'). A quality inhering in a bearer by virtue of the bearer's being present in females and absent from males in members of the same species. http://orcid.org/0000-0002-1373-1705 + + + + + + + + + + + + + + + diff --git a/pato.json b/pato.json index 8f65ddd3..3ae5fd40 100644 --- a/pato.json +++ b/pato.json @@ -1,81 +1,28 @@ { "graphs" : [ { "nodes" : [ { - "id" : "http://purl.obolibrary.org/obo/PATO_0000004", - "meta" : { - "definition" : { - "val" : "A quality of inhering in a bearer by virtue of the bearer's disposition to move freely.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Should be defined using translocation." - } ] - }, - "type" : "CLASS", - "lbl" : "mobility" - }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000488", "meta" : { "definition" : { "val" : "A response quality inhering in a bearer by virtue of the bearer's lack of reaction to a stimulus or an agent.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "unresponsive", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000487" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "unresponsive to" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001336", - "meta" : { - "definition" : { - "val" : "A biological sex quality inhering in an individual whose sex is unknown.", - "xrefs" : [ "MGED:MGED" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Unknown is not a type of sex." - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete unknown sex" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0010646", - "meta" : { - "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", - "xrefs" : [ "GOC:dph", "GOC:tb" ] - }, - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000487" } ] }, "type" : "CLASS", - "lbl" : "regulation of cell communication" + "lbl" : "unresponsive to" }, { "id" : "http://purl.obolibrary.org/obo/PATO_0000487", "meta" : { @@ -83,7 +30,7 @@ "val" : "A response quality inhering in a bearer by virtue of the bearer's disposition to react to a stimulus or an agent.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", "val" : "responsive", @@ -108,6 +55,9 @@ }, "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", "val" : "GO:0005622" }, { @@ -116,29 +66,21 @@ }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" } ] }, "type" : "CLASS", "lbl" : "obsolete intracellular part" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0010647", + "id" : "http://purl.obolibrary.org/obo/go#goslim_generic", "meta" : { - "definition" : { - "val" : "Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", - "xrefs" : [ "GOC:dph", "GOC:tb" ] - }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Generic GO slim" } ] }, - "type" : "CLASS", - "lbl" : "positive regulation of cell communication" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000003", + "id" : "http://purl.obolibrary.org/obo/PATO_0000489", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -149,39 +91,35 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete assay" + "lbl" : "obsolete vigorous response" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001337", + "id" : "http://purl.obolibrary.org/obo/PATO_0000480", "meta" : { - "definition" : { - "val" : "A yeast mating type.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "yeast mating type" + "lbl" : "obsolete positive regulation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001334", + "id" : "http://purl.obolibrary.org/obo/PATO_0000482", "meta" : { - "definition" : { - "val" : "A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Diameter" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "diameter" + "lbl" : "obsolete response value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000006", + "id" : "http://purl.obolibrary.org/obo/PATO_0000481", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -192,37 +130,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete process" + "lbl" : "obsolete negative regulation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000005", + "id" : "http://purl.obolibrary.org/obo/PATO_0000484", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete absolute activity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001335", - "meta" : { - "definition" : { - "val" : "A mating type that indicates whether the F plasmid has integrated into the chromosome.", - "xrefs" : [ "MGED:MGED" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "bacterial mating type" + "lbl" : "obsolete tactile hyporesponsive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000489", + "id" : "http://purl.obolibrary.org/obo/PATO_0000483", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -233,102 +156,163 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete vigorous response" + "lbl" : "obsolete tactile hyperresponsive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000008", + "id" : "http://purl.obolibrary.org/obo/PATO_0000486", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's scalar absolute value of the rate of change of the bearer's position.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Velocity" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "velocity", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "speed" + "lbl" : "obsolete moderate response" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000007", + "id" : "http://purl.obolibrary.org/obo/PATO_0000485", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative activity" + "lbl" : "obsolete mild response" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001338", + "id" : "http://purl.obolibrary.org/obo/PCO_0000004", "meta" : { "definition" : { - "val" : "A biological sex quality inhering in a population of multiple sexes.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A quality that inheres in a community.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "These may not belong under BFO:quality. May be better to call them community characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2." }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "For example a mixture of females and male or males and hermaphrodites." + "val" : "Includes qualities like diversity, species richness, stability, resilience, community structure, number of trophic levels. A community quality may depend on the qualities of individual organism in the community, but cannot be measured or described for a single individual." } ] }, "type" : "CLASS", - "lbl" : "mixed sex" + "lbl" : "quality of an ecological community" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0010648", + "id" : "http://purl.obolibrary.org/obo/PCO_0000003", "meta" : { "definition" : { - "val" : "Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", - "xrefs" : [ "GOC:dph", "GOC:tb" ] + "val" : "A quality that inheres in a biological population.", + "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Includes qualities like population size, population growth rate, carrying capacity, immigration rate, emigration rate, fecundity, and death rate. A population quality may depend on the qualities of individual organisms in the population, but cannot be measured or described for a single organism. This term may be replaced by a PATO term." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "See Chris's comments on population qualities at: http://code.google.com/p/popcomm-ontology/issues/detail?id=4. These may not belong under BFO:quality. May be better to call them population characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, "type" : "CLASS", - "lbl" : "negative regulation of cell communication" + "lbl" : "quality of a population" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001339", + "id" : "http://purl.obolibrary.org/obo/PATO_0000499", "meta" : { "definition" : { - "val" : "A composition quality inhering in an bearer by virtue of the bearer's homogeneity of a biomaterial.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A duration quality of a process which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "decreased time", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "decreased period", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "shortened period", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "fast time", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "low period", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000498" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000716" } ] }, "type" : "CLASS", - "lbl" : "biomaterial purity" + "lbl" : "decreased duration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000009", + "id" : "http://purl.obolibrary.org/obo/PATO_0000498", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "definition" : { + "val" : "A duration quality of a process which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "slow time", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "high time", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "chronic", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "prolonged period", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "increased time", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "increased period", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000499" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000715" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute speed" + "lbl" : "increased duration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000480", + "id" : "http://purl.obolibrary.org/obo/PATO_0000491", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -339,22 +323,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete positive regulation" + "lbl" : "obsolete sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000482", + "id" : "http://purl.obolibrary.org/obo/PATO_0000490", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete response value" + "lbl" : "obsolete rhythym value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000481", + "id" : "http://purl.obolibrary.org/obo/PATO_0000493", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -365,9 +349,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete negative regulation" + "lbl" : "obsolete amplitude value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000000", + "id" : "http://purl.obolibrary.org/obo/PATO_0000492", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -378,24 +362,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete pato" + "lbl" : "obsolete absolute rhythym value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001332", + "id" : "http://purl.obolibrary.org/obo/PATO_0000495", "meta" : { - "definition" : { - "val" : "A morphology quality inhering in a bearer by virtue of the bearer's lack of distinct morphology.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "amorphous" + "lbl" : "obsolete persistence value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000484", + "id" : "http://purl.obolibrary.org/obo/PATO_0000494", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -406,570 +388,684 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete tactile hyporesponsive" + "lbl" : "obsolete period value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001333", + "id" : "http://purl.obolibrary.org/obo/PATO_0000497", "meta" : { - "definition" : { - "val" : "A quality of a process which ends later than the natural end time.", - "xrefs" : [ "PATOC:melissa" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "temporally extended" + "lbl" : "obsolete relative rhythym value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000483", + "id" : "http://purl.obolibrary.org/obo/PATO_0000496", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete tactile hyperresponsive" + "lbl" : "obsolete phase value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000486", + "id" : "http://purl.obolibrary.org/obo/PCO_0000017", "meta" : { + "definition" : { + "val" : "A collection of organisms that has as parts every organism of given species and no organisms of any other species.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "At the moment there is no way to specify in an OWL axiom that the collection includes every individual of a species. This should be added, if possible." }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is neutral with respect to which organisms are included in a species. Membership will depend on the species concept and the taxonomic assertions used to define the species. These criteria must be specified by the user." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000120" } ] }, "type" : "CLASS", - "lbl" : "obsolete moderate response" + "lbl" : "species as a collection of organisms" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001330", + "id" : "http://purl.obolibrary.org/obo/PCO_0000018", "meta" : { "definition" : { - "val" : "A flavor quality inhering in a bearer by virtue of the bearer's lacking flavour.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "collection of organisms of the same species" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000120" } ] }, "type" : "CLASS", - "lbl" : "flavourless" + "lbl" : "single-species collection of organisms" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000002", + "id" : "http://purl.obolibrary.org/obo/PATO_0002205", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's ability to hold an electrical charge.", + "xrefs" : [ "Wikipedia:Wikipedia" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-25T09:42:51Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Capacitance is also a measure of the amount of electrical energy stored (or separated) for a given electric potential." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete value" + "lbl" : "capacitance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000001", + "id" : "http://purl.obolibrary.org/obo/PATO_0002206", "meta" : { "definition" : { - "val" : "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities", + "val" : "A maturity quality inhering to a bearer by virtue of the bearer's being at the point or short after birth.", "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "quality (PATO)" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-05-07T12:11:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000072" } ] }, "type" : "CLASS", - "lbl" : "quality" + "lbl" : "neonatal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000485", + "id" : "http://purl.obolibrary.org/obo/PATO_0002203", "meta" : { + "definition" : { + "val" : "Handedness where the organism preferentially uses the right hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot.", + "xrefs" : [ "birnlex:2184" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-22T05:49:19Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" } ] }, "type" : "CLASS", - "lbl" : "obsolete mild response" + "lbl" : "right handedness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001331", + "id" : "http://purl.obolibrary.org/obo/PATO_0002204", "meta" : { "definition" : { - "val" : "An odor quality inhering in a bearer by virtue of the bearer's having odour.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Handedness where the organism exhibits no overall dominance in the use of right or left hand or foot in the performance of tasks that require one hand or foot or a dominant hand or foot.", + "xrefs" : [ "birnlex:2042" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-22T05:49:30Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "odorous" + "lbl" : "ambidextrous handedness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000499", + "id" : "http://purl.obolibrary.org/obo/PATO_0002209", "meta" : { "definition" : { - "val" : "A duration quality of a process which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having the shape of an incisor tooth.", + "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/incisiform" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "fast time", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "decreased time", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "low period", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "decreased period", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "shortened period", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000498" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000716" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T12:16:04Z" } ] }, "type" : "CLASS", - "lbl" : "decreased duration" + "lbl" : "incisiform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000015", + "id" : "http://purl.obolibrary.org/obo/PATO_0002207", "meta" : { "definition" : { - "val" : "A chromatic scalar-circular quality inhering in an object that manifests in an observer by virtue of the dominant wavelength of the visible light; may be subject to fiat divisions, typically into 7 or 8 spectra.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "A quality that is the distance between the end of the inserted object and the surface of the object into which it penetrates.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-05-14T11:40:24Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "color hue" + "lbl" : "insertion depth" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002286", + "id" : "http://purl.obolibrary.org/obo/PATO_0002208", "meta" : { "definition" : { - "val" : "Inverse of developmentally preceded by", - "xrefs" : [ ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a spoon.", + "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/spoon-shaped" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T12:13:12Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "developmentally succeeded by" + "type" : "CLASS", + "lbl" : "spoon-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001347", + "id" : "http://purl.obolibrary.org/obo/PATO_0002201", "meta" : { "definition" : { - "val" : "A bacterial mating type indicating the presence of F plasmid in a bacterial cell.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A behavioral quality inhering ina bearer by virtue of the bearer's unequal distribution of fine motor skill between its left and right hands or feet.", + "xrefs" : [ "birnlex:2178" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-22T05:48:33Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Adapted from Wikipedia and the birnlex term that is dbxref'd. Added on behalf of OBI at March 2010 workshop." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" } ] }, "type" : "CLASS", - "lbl" : "F mating type" + "lbl" : "handedness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000498", + "id" : "http://purl.obolibrary.org/obo/PATO_0002202", "meta" : { "definition" : { - "val" : "A duration quality of a process which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Handedness where the organism preferentially uses the left hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot.", + "xrefs" : [ "birnlex:2038" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "slow time", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "high time", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "chronic", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "prolonged period", - "xrefs" : [ ] + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" }, { - "pred" : "hasExactSynonym", - "val" : "increased time", - "xrefs" : [ ] + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-22T05:49:06Z" }, { - "pred" : "hasExactSynonym", - "val" : "increased period", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000499" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000715" } ] }, "type" : "CLASS", - "lbl" : "increased duration" + "lbl" : "left handedness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000014", + "id" : "http://purl.obolibrary.org/obo/PATO_0002200", "meta" : { "definition" : { - "val" : "A composite chromatic quality composed of hue, saturation and intensity parts.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality which inheres in a substance by virtue of the ease with which the substance can be changed into a gaseous state.", + "xrefs" : [ "PATOC:JH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "colour", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "relative color", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000020" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-15T04:38:02Z" } ] }, "type" : "CLASS", - "lbl" : "color" + "lbl" : "vaporizability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001348", + "id" : "http://purl.obolibrary.org/obo/PCO_0000000", "meta" : { "definition" : { - "val" : "A bacterial mating type indicating the absence of F plasmid in a bacterial cell.", - "xrefs" : [ "MGED:MGED" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "F-", + "val" : "A material entity that consists of two or more organisms, viruses, or viroids.", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "group of organism" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "May be of the same or different species." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Examples include: population, community, species (meaning the collection of organisms that makes up a species, not the taxonomic rank), and family." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "organism collection" } ] }, "type" : "CLASS", - "lbl" : "F minus mating type" + "lbl" : "collection of organisms" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000017", + "id" : "http://purl.obolibrary.org/obo/RO_0000080", "meta" : { "definition" : { - "val" : "A scalar chromatic property that is the degree of purity of perceived light.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is quality of" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Color saturation refers to the amount of white light or gray paint mixed in with the hue (single wavelength) and is a measure of color purity." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "quality_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A quality inheres in its bearer at all times for which the quality exists." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this red color is a quality of this apple" } ] }, - "type" : "CLASS", - "lbl" : "color saturation" + "type" : "PROPERTY", + "lbl" : "quality of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001345", + "id" : "http://purl.obolibrary.org/obo/PCO_0000002", "meta" : { "definition" : { - "val" : "A S. pombe mating type determined by the mat1-Mc and mat1-Mi on the mat1 locus.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "M", + "val" : "A community of at least two different species, living in a particular area. Must have at least two populations of different species as members.", "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "h -", - "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "ISBN:0865423504" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000123" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "multispecies community" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Ecological community is defined broadly here, but includes both ecological interactions (inherited from parent term community) and spatial co-existence. It may be used to describe every organisms living in an area, but is often used to refer only to organisms of a particular taxon or guild (e.g., the plant community, the insect community, the herbivore community). The word community, as it often used to describe a group of humans living together, is a type of single-species collection of organisms, not an ecological community." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Not sure if the equivalancy axiom specifies that both populations are located in the same site." } ] }, "type" : "CLASS", - "lbl" : "h minus" + "lbl" : "ecological community" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001346", + "id" : "http://purl.obolibrary.org/obo/PCO_0000001", "meta" : { "definition" : { - "val" : "A S. pombe mating type determined by the mat1-Pc and mat1-Pi on the mat1 locus.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "P", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "h+", + "val" : "A collection of organisms, all of the same species, that live in the same place.", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "This a general term that can include every organism of a species living in an area or any subset of them. Subclasses can be more specific as needed." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "ISBN:0878932739" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "It is sometimes difficult to define the physical boundaries of a population. In the case of sexually reproducing organisms, the individuals within a population have the potential to reproduce with one another during the course of their lifetimes. 'Community', as often used to describe a group of humans, is a type of population. \n\nClasses for population already exist in IDO ('organism population', IDO_0000509) and OBI ('population', OBI_0000181). The definitions should be standardized across OBO Foundry ontologies and only one term used." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "CLASS", - "lbl" : "h plus" + "lbl" : "population of organisms" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000016", + "id" : "http://purl.obolibrary.org/obo/PATO_0002216", "meta" : { "definition" : { - "val" : "A scalar optical property that is the intensity, value or amount of perceived light.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A molecular quality that pertains to the post-translational modification of a protein by the covalent attachment of one or more ubiquitin monomer.", + "xrefs" : [ "neurolex:http://neurolex.org/" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "color value", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "color lightness", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "color intensity", + "pred" : "hasRelatedSynonym", + "val" : "Ubiquitylation", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T02:00:37Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Color brightness refers to the intensity, lightness or value of the light present. Think of this as a dimmer switch." + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "color brightness" + "lbl" : "ubiquinated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000019", + "id" : "http://purl.obolibrary.org/obo/PATO_0002217", "meta" : { "definition" : { - "val" : "A chromatic property that is the relative position of different hues or degrees of saturation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A molecular quality inhering in a bearer by virtue of the bearer's being combined, or impregnated, with nitric acid, or some of its compounds.", + "xrefs" : [ "neurolex:http://neurolex.org/wiki/Category:Nitrated_Molecular_Quality" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T02:04:03Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "color pattern" + "lbl" : "nitrated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000018", + "id" : "http://purl.obolibrary.org/obo/PATO_0002214", "meta" : { "definition" : { - "val" : "A luminous flux quality inhering in a bearer by virtue of the bearer's emitting longer wavelength light following the absorption of shorter wavelength radiation; fluorescence is common with aromatic compounds with several rings joined together.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having two lobes.", + "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/bilobed" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T01:54:08Z" } ] }, "type" : "CLASS", - "lbl" : "fluorescence" + "lbl" : "bilobed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001349", + "id" : "http://purl.obolibrary.org/obo/PATO_0002215", "meta" : { "definition" : { - "val" : "A mating type that indicates that the F plasmid has integrated into the chromosome.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having the shape of a scythe or sickle.", + "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/falciform" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "Hfr", + "val" : "hooked", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "unciform", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "sickle-shaped", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "scythe-shaped", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "uncinate", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "falcate", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T01:57:46Z" } ] }, "type" : "CLASS", - "lbl" : "high frequency recombinant" + "lbl" : "falciform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000491", + "id" : "http://purl.obolibrary.org/obo/PATO_0002218", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's loss of myelin sheath.", + "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/demyelinated" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T02:08:06Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "For example loss of myelin sheath from a normally myelinated axon or dendrite." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete sensitivity value" + "lbl" : "demyelinated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001340", + "id" : "http://purl.obolibrary.org/obo/PATO_0002219", "meta" : { "definition" : { - "val" : "A biological sex quality inhering in an organism or a population with both male and female sexual organs in one individual.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A quality inhering in a bearer that is shaped in the form of a fan.", + "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/fan-shaped" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "intersex", + "val" : "fan-like", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-09T01:43:42Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "hermaphrodite" + "lbl" : "fan-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000490", + "id" : "http://purl.obolibrary.org/obo/RO_0000086", "meta" : { + "definition" : { + "val" : "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0000086" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete rhythym value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000493", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this apple has quality this red color" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_quality" } ] }, - "type" : "CLASS", - "lbl" : "obsolete amplitude value" + "type" : "PROPERTY", + "lbl" : "has quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000492", + "id" : "http://purl.obolibrary.org/obo/PATO_0002212", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being small or narrow in circumference or width in proportion to length or height.", + "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/slender" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "gracile", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T01:32:26Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute rhythym value" + "lbl" : "slender" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001343", + "id" : "http://purl.obolibrary.org/obo/PATO_0002213", "meta" : { "definition" : { - "val" : "A S. pombe mating type determined by the gene configuration on the mat1 locus.", + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T01:47:09Z" } ] }, "type" : "CLASS", - "lbl" : "Schizosaccharomyces pombe mating type" + "lbl" : "obclavate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000495", + "id" : "http://purl.obolibrary.org/obo/PATO_0002210", "meta" : { + "definition" : { + "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a teardrop.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "bulblike", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "bulb-shaped", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "swollen", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T12:19:08Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete persistence value" + "lbl" : "bulbous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000011", + "id" : "http://purl.obolibrary.org/obo/PATO_0002211", "meta" : { "definition" : { - "val" : "A time quality inhering in a bearer by virtue of how long the bearer has existed.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or inward.", + "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/recurved" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-08T12:26:45Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "age" + "lbl" : "recurved" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000494", + "id" : "http://purl.obolibrary.org/obo/PATO_0000444", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -980,103 +1076,119 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete period value" + "lbl" : "obsolete percentage value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001344", + "id" : "http://purl.obolibrary.org/obo/PATO_0001776", "meta" : { "definition" : { - "val" : "A S. cerevisiae mating type cells that secrete a pheromone that stimulates a haploids.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A flexibility which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasBroadSynonym", - "val" : "alpha", + "pred" : "hasExactSynonym", + "val" : "high flexibility", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001777" } ] }, "type" : "CLASS", - "lbl" : "alpha mating type (yeast)" + "lbl" : "increased flexibility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000010", + "id" : "http://purl.obolibrary.org/obo/PATO_0000443", "meta" : { + "definition" : { + "val" : "A sleep pattern quality inhering in a bearer by virtue of the bearer's disrupted sleep during normal sleeping period; often accompanied by cataplexy, sleep paralysis.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Consider NBO:0000423" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative speed" + "lbl" : "obsolete narcolepsy" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001341", + "id" : "http://purl.obolibrary.org/obo/PATO_0001777", "meta" : { "definition" : { - "val" : "A S. cerevisiae mating type cells that secrete a pheromone that in alpha haploids stimulates processes that lead to mating.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A flexibility which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { - "pred" : "hasBroadSynonym", - "val" : "a", + "pred" : "hasExactSynonym", + "val" : "low flexibility", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001776" } ] }, "type" : "CLASS", - "lbl" : "a mating type (yeast)" + "lbl" : "decreased flexibility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000497", + "id" : "http://purl.obolibrary.org/obo/PATO_0001774", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's having or existing in many phases.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative rhythym value" + "lbl" : "polyphasic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000013", + "id" : "http://purl.obolibrary.org/obo/PATO_0000446", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative age" + "lbl" : "obsolete absolute percentage value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001342", + "id" : "http://purl.obolibrary.org/obo/PATO_0001775", "meta" : { "definition" : { - "val" : "A S. cerevisiae mating type.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the dorsal-ventral axis.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "Saccharomyces cerevisiae mating type" + "lbl" : "dorsal-ventral polarity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000012", + "id" : "http://purl.obolibrary.org/obo/PATO_0000445", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -1087,61 +1199,61 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute age" + "lbl" : "obsolete relative percentage value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000496", + "id" : "http://purl.obolibrary.org/obo/PATO_0000448", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete phase value" + "lbl" : "obsolete high percentage" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002205", + "id" : "http://purl.obolibrary.org/obo/GO_0044464", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's ability to hold an electrical charge.", - "xrefs" : [ "Wikipedia:Wikipedia" ] + "val" : "OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms.", + "xrefs" : [ "GOC:jl" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-25T09:42:51Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], + "xrefs" : [ { + "val" : "NIF_Subcellular:sao628508602" + } ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "cellular subcomponent", + "xrefs" : [ "NIF_Subcellular:sao628508602" ] }, { + "pred" : "hasRelatedSynonym", + "val" : "protoplast", + "xrefs" : [ "GOC:mah" ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "cellular_component" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Capacitance is also a measure of the amount of electrical energy stored (or separated) for a given electric potential." - } ] - }, - "type" : "CLASS", - "lbl" : "capacitance" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001358", - "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having a knob or knoblike protuberance.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", + "val" : "CL:0000000" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/go.owl" } ] }, "type" : "CLASS", - "lbl" : "umbonate" + "lbl" : "obsolete cell part" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000026", + "id" : "http://purl.obolibrary.org/obo/PATO_0000447", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -1152,341 +1264,346 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete carbohydrate composition" + "lbl" : "obsolete decreased percentage" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000025", + "id" : "http://purl.obolibrary.org/obo/PATO_0001778", "meta" : { "definition" : { - "val" : "A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts.", + "val" : "A strength which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "content", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "structure, composition", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "compositionality", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "composed of", + "val" : "high strength", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0002015" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "For example calcium composition (which may inhere in bone), haemoglobin composition (which may inhere in blood)." + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001779" } ] }, "type" : "CLASS", - "lbl" : "composition" + "lbl" : "increased strength" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002206", + "id" : "http://purl.obolibrary.org/obo/PATO_0001779", "meta" : { "definition" : { - "val" : "A maturity quality inhering to a bearer by virtue of the bearer's being at the point or short after birth.", + "val" : "A strength which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "weak", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-05-07T12:11:47Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001778" } ] }, "type" : "CLASS", - "lbl" : "neonatal" + "lbl" : "decreased strength" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001359", + "id" : "http://purl.obolibrary.org/obo/PATO_0000449", "meta" : { - "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having many wrinkles or creases on the surface.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "rugose" + "lbl" : "obsolete increased percentage" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000028", + "id" : "http://purl.obolibrary.org/obo/PATO_0000440", "meta" : { + "definition" : { + "val" : "A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000330" } ] }, "type" : "CLASS", - "lbl" : "obsolete macromolecular composition" + "lbl" : "regular spatial pattern" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001356", + "id" : "http://purl.obolibrary.org/obo/PATO_0001772", "meta" : { "definition" : { - "val" : "A shape quality inhering in a cell by virtue of the bearer's ability to take on two or more different shapes during its life cycle.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being extended on all sides of another entity simultaneously.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "encircling", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "wrapping", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "enclosing", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Nedd to add reciprocal of relationship to 'surrounded by' PATO:0005016." } ] }, "type" : "CLASS", - "lbl" : "pleomorphic" + "lbl" : "surrounding" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002203", + "id" : "http://purl.obolibrary.org/obo/PATO_0001773", "meta" : { "definition" : { - "val" : "Handedness where the organism preferentially uses the right hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot.", - "xrefs" : [ "birnlex:2184" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's having only one phase or stage.", + "xrefs" : [ "hefreedictionary.com:hefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-22T05:49:19Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" } ] }, "type" : "CLASS", - "lbl" : "right handedness" + "lbl" : "monophasic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000027", + "id" : "http://purl.obolibrary.org/obo/PATO_0000442", "meta" : { + "definition" : { + "val" : "A sleep pattern quality inhering in a bearer by virtue of the bearer's inability to sleep.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Consider NBO:0000422." }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete electrolyte composition" + "lbl" : "obsolete insomnia" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002204", + "id" : "http://purl.obolibrary.org/obo/PATO_0001770", "meta" : { "definition" : { - "val" : "Handedness where the organism exhibits no overall dominance in the use of right or left hand or foot in the performance of tasks that require one hand or foot or a dominant hand or foot.", - "xrefs" : [ "birnlex:2042" ] + "val" : "A viability quality inhering in a population by virtue of some of it's members' ability to survive.", + "xrefs" : [ "PATOC:CVC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-22T05:49:30Z" } ] }, "type" : "CLASS", - "lbl" : "ambidextrous handedness" + "lbl" : "semi-viable" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001357", + "id" : "http://purl.obolibrary.org/obo/PATO_0000441", "meta" : { "definition" : { - "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped like a cushion or has a marked convex cushion-like form.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's marked by tedious repetition.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "pulvinate" + "lbl" : "repetitive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002209", + "id" : "http://purl.obolibrary.org/obo/PATO_0001771", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having the shape of an incisor tooth.", - "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/incisiform" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0002259" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T12:16:04Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "incisiform" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000029", + "id" : "http://purl.obolibrary.org/obo/PATO_0001787", "meta" : { + "definition" : { + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete protein composition" + "lbl" : "rotational curvature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002207", + "id" : "http://purl.obolibrary.org/obo/PATO_0000455", "meta" : { "definition" : { - "val" : "A quality that is the distance between the end of the inserted object and the surface of the object into which it penetrates.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A maturity quality inhering in a bearer by virtue of the bearer's having arrived at the onset of puberty (the age at which sex glands become functional) but not yet fully mature.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-05-14T11:40:24Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "insertion depth" + "lbl" : "pubescent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002208", + "id" : "http://purl.obolibrary.org/obo/PATO_0001788", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a spoon.", - "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/spoon-shaped" ] + "val" : "A density which is higher relative to the normal or average.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high density", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T12:13:12Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001790" } ] }, "type" : "CLASS", - "lbl" : "spoon-shaped" + "lbl" : "increased mass density" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001350", + "id" : "http://purl.obolibrary.org/obo/PATO_0000454", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the rate of change of the bearer's angular velocity.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Angular_acceleration" ] + "val" : "A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "angular acceleration" + "lbl" : "hairy" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001351", + "id" : "http://purl.obolibrary.org/obo/PATO_0001785", "meta" : { "definition" : { - "val" : "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given area.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Area_density" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved outward.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: obsolete, definition too ambiguous." } ] }, "type" : "CLASS", - "lbl" : "area density" + "lbl" : "splayed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000020", + "id" : "http://purl.obolibrary.org/obo/PATO_0000457", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete deviation(from_normal) value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001354", + "id" : "http://purl.obolibrary.org/obo/PATO_0001786", "meta" : { "definition" : { - "val" : "A optical quality inhering in a bearer by virtue of the bearer's exhibiting low opacity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions.", + "xrefs" : [ "die.net:die.net" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "subdivided", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "divided", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "forked", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "septate", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "clefted", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "translucent" + "lbl" : "split" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002201", + "id" : "http://purl.obolibrary.org/obo/PATO_0000456", "meta" : { - "definition" : { - "val" : "A behavioral quality inhering ina bearer by virtue of the bearer's unequal distribution of fine motor skill between its left and right hands or feet.", - "xrefs" : [ "birnlex:2178" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-22T05:48:33Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Adapted from Wikipedia and the birnlex term that is dbxref'd. Added on behalf of OBI at March 2010 workshop." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" } ] }, "type" : "CLASS", - "lbl" : "handedness" + "lbl" : "obsolete abstract" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000022", + "id" : "http://purl.obolibrary.org/obo/PATO_0000459", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -1497,130 +1614,129 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete gametophytic compatability" + "lbl" : "obsolete relative quantity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002202", + "id" : "http://purl.obolibrary.org/obo/PATO_0000458", "meta" : { - "definition" : { - "val" : "Handedness where the organism preferentially uses the left hand or foot for tasks requiring the use of a single hand or foot or a dominant hand or foot.", - "xrefs" : [ "birnlex:2038" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-22T05:49:06Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "left handedness" + "lbl" : "obsolete presence value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000021", + "id" : "http://purl.obolibrary.org/obo/PATO_0001789", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to harmonious coexistence.", + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's having a shape resembling a dome.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Needs redefined or obsoleted. Is this the same as genetic incompatibility? Moved to organismal quality." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "compatibility" + "lbl" : "domed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001355", + "id" : "http://purl.obolibrary.org/obo/PATO_0001780", "meta" : { "definition" : { - "val" : "A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally developed, usually due to malnutrition.", + "xrefs" : [ "Wiikipedia:Wiikipedia" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001857" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "dystrophied", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "convex" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000024", - "meta" : { + "pred" : "hasRelatedSynonym", + "val" : "dystrophy", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete sporophytic compatability" + "lbl" : "dystrophic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001352", + "id" : "http://purl.obolibrary.org/obo/RO_0000057", "meta" : { "definition" : { - "val" : "A density quality which is equal to the mass exerting an influence on a one-dimensional object.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Linear_density" ] + "val" : "a relation between a process and a continuant, in which the continuant is somehow involved in the process", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_participant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this investigation has participant this investigator" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this process has participant this input material (or this output material)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this blood coagulation has participant this blood clot" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has participant" + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:has_participant" } ] }, - "type" : "CLASS", - "lbl" : "linear density" + "type" : "PROPERTY", + "lbl" : "has participant" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002200", + "id" : "http://purl.obolibrary.org/obo/PATO_0000451", "meta" : { - "definition" : { - "val" : "A quality which inheres in a substance by virtue of the ease with which the substance can be changed into a gaseous state.", - "xrefs" : [ "PATOC:JH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-15T04:38:02Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "vaporizability" + "lbl" : "obsolete pilosity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001353", + "id" : "http://purl.obolibrary.org/obo/PATO_0001783", "meta" : { "definition" : { - "val" : "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given volume.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Mass_density" ] + "val" : "An intensity which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low intensity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001782" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "volumetric density" + "lbl" : "decreased intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000023", + "id" : "http://purl.obolibrary.org/obo/PATO_0000450", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -1631,180 +1747,201 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative compatability" + "lbl" : "obsolete low percentage" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002264", + "id" : "http://purl.obolibrary.org/obo/PATO_0001784", "meta" : { "definition" : { - "val" : "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.", - "xrefs" : [ ] + "val" : "A branched quality inhering in a bearer by virtue of the bearer's being divided into two branches.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "affects", + "val" : "forked", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." + "pred" : "hasExactSynonym", + "val" : "bifid", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001572" } ] }, - "type" : "PROPERTY", - "lbl" : "acts upstream of or within" + "type" : "CLASS", + "lbl" : "bifurcated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002216", + "id" : "http://purl.obolibrary.org/obo/PATO_0000453", "meta" : { "definition" : { - "val" : "A molecular quality that pertains to the post-translational modification of a protein by the covalent attachment of one or more ubiquitin monomer.", - "xrefs" : [ "neurolex:http://neurolex.org/" ] + "val" : "A pilosity quality inhering in a bearer by virtue of the bearer's lack of hairs or bristles.", + "xrefs" : [ "PATOC:CJM", "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "Ubiquitylation", + "val" : "hairless", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T02:00:37Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "ubiquinated" + "lbl" : "glabrous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001369", + "id" : "http://purl.obolibrary.org/obo/PATO_0001781", "meta" : { "definition" : { - "val" : "A shape quality inhering in a colony by virtue of the bearer's appearing above the medium surface with terraced edges.", + "val" : "A thickness quality which lacks pattern.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "raised" + "lbl" : "irregular thickness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000037", + "id" : "http://purl.obolibrary.org/obo/PATO_0000452", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative pilosity value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001782", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's density, firmness, or viscosity.", + "val" : "An intensity which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "firmness", + "pred" : "hasExactSynonym", + "val" : "high intensity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001783" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "consistency" + "lbl" : "increased intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000036", + "id" : "http://purl.obolibrary.org/obo/PCO_0000031", "meta" : { + "definition" : { + "val" : "A material entity that is one or more organisms, viruses or viroids.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "CLASS", - "lbl" : "obsolete water content" + "lbl" : "organismal entity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002217", + "id" : "http://purl.obolibrary.org/obo/PATO_0001798", "meta" : { "definition" : { - "val" : "A molecular quality inhering in a bearer by virtue of the bearer's being combined, or impregnated, with nitric acid, or some of its compounds.", - "xrefs" : [ "neurolex:http://neurolex.org/wiki/Category:Nitrated_Molecular_Quality" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T02:04:03Z" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "twisted", + "xrefs" : [ ] }, { + "pred" : "hasRelatedSynonym", + "val" : "tightly curled", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "nitrated" + "lbl" : "kinked" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000039", + "id" : "http://purl.obolibrary.org/obo/RO_0000052", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's orientation in space.", - "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + "val" : "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "inheres_in" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "TODO: consider merging with angular placement." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this red color inheres in this apple" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A dependent inheres in its bearer at all times for which the dependent exists." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this fragility inheres in this vase" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "inheres in" } ] }, - "type" : "CLASS", - "lbl" : "direction" + "type" : "PROPERTY", + "lbl" : "inheres in" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002214", + "id" : "http://purl.obolibrary.org/obo/PATO_0000466", "meta" : { - "definition" : { - "val" : "A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having two lobes.", - "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/bilobed" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T01:54:08Z" } ] }, "type" : "CLASS", - "lbl" : "bilobed" + "lbl" : "obsolete none" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001367", + "id" : "http://purl.obolibrary.org/obo/PATO_0001799", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's exhibiting disturbance of its smoothness or regularity.", + "xrefs" : [ ".thefreedictionary.com:.thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "lobate" + "lbl" : "ruffled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000038", + "id" : "http://purl.obolibrary.org/obo/PATO_0000465", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -1815,450 +1952,512 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete gel consistency" + "lbl" : "obsolete marked" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002215", + "id" : "http://purl.obolibrary.org/obo/PATO_0000468", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001997" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001796", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having the shape of a scythe or sickle.", - "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/falciform" ] + "val" : "A coiling which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "hooked", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "scythe-shaped", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "unciform", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "sickle-shaped", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "uncinate", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "falcate", + "val" : "low coiling", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T01:57:46Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001795" } ] }, "type" : "CLASS", - "lbl" : "falciform" + "lbl" : "decreased coiling" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001368", + "id" : "http://purl.obolibrary.org/obo/PATO_0000467", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having an irregularly toothed edge.", + "val" : "A quality inhering in a bearer by virtue of the bearer's existence.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#absent_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "jagged", + "val" : "present in organism", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000462" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "erose" + "lbl" : "present" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002218", + "id" : "http://purl.obolibrary.org/obo/PATO_0001797", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's loss of myelin sheath.", - "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/demyelinated" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T02:08:06Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "For example loss of myelin sheath from a normally myelinated axon or dendrite." + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001883" } ] }, - "type" : "CLASS", - "lbl" : "demyelinated" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002219", + "id" : "http://purl.obolibrary.org/obo/RO_0000056", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer that is shaped in the form of a fan.", - "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/fan-shaped" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "fan-like", + "val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this investigator participates in this investigation" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-09T01:43:42Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this input material (or this output material) participates in this process" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "participates in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this blood clot participates in this blood coagulation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "participates_in" + } ] + }, + "type" : "PROPERTY", + "lbl" : "participates in" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000469", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "fan-shaped" + "lbl" : "obsolete high" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002263", + "id" : "http://purl.obolibrary.org/obo/RO_0000053", "meta" : { "definition" : { - "val" : "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.", + "val" : "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", "xrefs" : [ ] }, + "xrefs" : [ { + "val" : "RO:0000053" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." + "val" : "this apple is bearer of this red color" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this vase is bearer of this fragility" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is bearer of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "bearer_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "bearer of" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "bearer_of" } ] }, "type" : "PROPERTY", - "lbl" : "acts upstream of" + "lbl" : "bearer of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001361", + "id" : "http://purl.obolibrary.org/obo/PATO_0001790", "meta" : { "definition" : { - "val" : "A texture quality inhering in a bearer by virtue of the bearer's being covered with warts or projections that resemble warts resulting in a hard rough surface.", + "val" : "A density which is lower relative to the normal or average.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low density", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001788" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "warty" + "lbl" : "decreased mass density" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001362", + "id" : "http://purl.obolibrary.org/obo/PATO_0001791", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being confined or restricted to multiple locations.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "multi-focal", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001716" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "fragile" + "lbl" : "multi-localised" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000031", + "id" : "http://purl.obolibrary.org/obo/PATO_0000460", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's deviation from normal or average.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#abnormal_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "aberrant", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "atypical", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "atypia", + "xrefs" : [ ] }, { + "pred" : "hasRelatedSynonym", + "val" : "defective", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, "type" : "CLASS", - "lbl" : "obsolete metabolite composition" + "lbl" : "abnormal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000030", + "id" : "http://purl.obolibrary.org/obo/PATO_0000462", "meta" : { + "definition" : { + "val" : "A quality denoting the lack of an entity.", + "xrefs" : [ "thefreedictionary.:thefreedictionary." ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#absent_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "absent from organism", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "absence", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001996" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000467" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "See documentation here: http://code.google.com/p/phenotype-ontologies/wiki/ModelingOfAbsence" } ] }, "type" : "CLASS", - "lbl" : "obsolete enzyme composition" + "lbl" : "absent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001360", + "id" : "http://purl.obolibrary.org/obo/PATO_0001794", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having thin filamentous extensions at its edge.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being wound in a continuous series of loops.", + "xrefs" : [ "Online_Dictionary:Online_Dictionary" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "filamentous" + "lbl" : "coiling" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000033", + "id" : "http://purl.obolibrary.org/obo/PATO_0001795", "meta" : { "definition" : { - "val" : "A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/concentration" ] + "val" : "A coiling which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "concentration", + "val" : "high coiling", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001796" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "concentration of" + "lbl" : "increased coiling" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002212", + "id" : "http://purl.obolibrary.org/obo/PATO_0000461", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being small or narrow in circumference or width in proportion to length or height.", - "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/slender" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#abnormal_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "gracile", + "val" : "average", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T01:32:26Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000460" } ] }, "type" : "CLASS", - "lbl" : "slender" + "lbl" : "normal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001365", + "id" : "http://purl.obolibrary.org/obo/PATO_0001792", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having spines, thorns or similar thin projections on its surface.", + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located on left side of from the a another entity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "spiny" + "lbl" : "left side of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002213", + "id" : "http://purl.obolibrary.org/obo/PATO_0000464", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of not being clearly visible.", + "xrefs" : [ "thefreedictionary:thefreedictionary" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "faint", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T01:47:09Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000463" } ] }, "type" : "CLASS", - "lbl" : "obclavate" + "lbl" : "inconspicuous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001366", + "id" : "http://purl.obolibrary.org/obo/PATO_0000463", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being small and resembling a point.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of being clearly visible.", + "xrefs" : [ "thefreedictionary:thefreedictionary" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "distinct", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000464" } ] }, "type" : "CLASS", - "lbl" : "punctiform" + "lbl" : "conspicuous" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002258", + "id" : "http://purl.obolibrary.org/obo/PATO_0001793", "meta" : { "definition" : { - "val" : "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p", - "xrefs" : [ ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located on right side of a another entity.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "false" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "In general you should not use this relation to make assertions - use one of the more specific relations below this one" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "developmentally preceded by" + "type" : "CLASS", + "lbl" : "right side of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000032", + "id" : "http://purl.obolibrary.org/obo/PCO_0000028", "meta" : { + "definition" : { + "val" : "A collection of organisms of the same species whose members are all either genealogically related to each other or have mated with each other.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Biological or social relations are covered by RO_0002437 (biotically interacts with), but that relations does provide an easy way to specify that two entities are interacting with each other (participating in the same interaction). Until that axiom is specified, the logical definition of this term is incomplete." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "These relations can include shared values, occupying the same spatial regkion. A community be be a single species collection of organsisms (as in a human community, which is also a type of population) or a or multi-species collection of organisms (as in an ecological community)." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000123" } ] }, "type" : "CLASS", - "lbl" : "obsolete secondary product composition" + "lbl" : "community" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002210", + "id" : "http://purl.obolibrary.org/obo/PCO_0000027", "meta" : { "definition" : { - "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a teardrop.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "bulblike", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "bulb-shaped", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "swollen", + "val" : "A collection of organisms of the same species that has as members only humans.", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "human population" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "human community" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T12:19:08Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "CLASS", - "lbl" : "bulbous" + "lbl" : "collection of humans" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001363", + "id" : "http://purl.obolibrary.org/obo/PCO_0000029", "meta" : { + "definition" : { + "val" : "A collection of organisms that consists of two or more organisms from at least two species.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Need to add axiom to specify that it has at a mimum members of two different species, but not sure how to specify that. Can't say \"('has member' only ('member of' min 2 'species as a collection of organisms'))\"." }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000123" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000404" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "multi-species collection of organisms" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000035", + "id" : "http://purl.obolibrary.org/obo/PATO_0000477", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete carbohydrate concentration" + "lbl" : "obsolete good value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001364", + "id" : "http://purl.obolibrary.org/obo/PATO_0000476", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having root like extensions radiating from its center.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "rhizoidal" + "lbl" : "obsolete bad value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002211", + "id" : "http://purl.obolibrary.org/obo/PATO_0000479", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or inward.", - "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/recurved" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-08T12:26:45Z" } ] }, "type" : "CLASS", - "lbl" : "recurved" + "lbl" : "obsolete regulation value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000034", + "id" : "http://purl.obolibrary.org/obo/PATO_0000478", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -2269,176 +2468,133 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete protein concentration" + "lbl" : "obsolete poor value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002629", + "id" : "http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to", "meta" : { "definition" : { - "val" : "An intensity which is characterized by being very severe.", - "xrefs" : [ "PATO:MAH" ] + "val" : "q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-05-26T06:44:11Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "profound intensity" + "type" : "PROPERTY", + "lbl" : "different_in_magnitude_relative_to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000444", + "id" : "http://purl.obolibrary.org/obo/PATO_0000471", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete percentage value" + "lbl" : "obsolete low" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001776", + "id" : "http://purl.obolibrary.org/obo/PATO_0000470", "meta" : { "definition" : { - "val" : "A flexibility which is relatively high.", + "val" : "An amount which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high flexibility", + "val" : "present in greater numbers in organism", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001777" - } ] - }, - "type" : "CLASS", - "lbl" : "increased flexibility" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002254", - "meta" : { - "definition" : { - "val" : "x has developmental contribution from y iff x has some part z such that z develops from y", + "pred" : "hasRelatedSynonym", + "val" : "accessory", "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" + "pred" : "hasExactSynonym", + "val" : "supernumerary", + "xrefs" : [ ] }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - } ] - }, - "type" : "PROPERTY", - "lbl" : "has developmental contribution from" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000443", - "meta" : { - "definition" : { - "val" : "A sleep pattern quality inhering in a bearer by virtue of the bearer's disrupted sleep during normal sleeping period; often accompanied by cataplexy, sleep paralysis.", + "pred" : "hasExactSynonym", + "val" : "increased number", "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + }, { + "pred" : "hasRelatedSynonym", + "val" : "increased", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001997" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000650" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000420" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Consider NBO:0000423" } ] }, "type" : "CLASS", - "lbl" : "obsolete narcolepsy" + "lbl" : "increased amount" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001777", + "id" : "http://purl.obolibrary.org/obo/PATO_0000473", "meta" : { - "definition" : { - "val" : "A flexibility which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low flexibility", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001776" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "decreased flexibility" + "lbl" : "obsolete relative_quality value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001774", + "id" : "http://purl.obolibrary.org/obo/PATO_0000472", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having or existing in many phases.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "polyphasic" + "lbl" : "obsolete quality value" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002255", + "id" : "http://purl.obolibrary.org/obo/PATO_0000475", "meta" : { - "definition" : { - "val" : "inverse of has developmental contribution from", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "PROPERTY", - "lbl" : "developmentally contributes to" + "type" : "CLASS", + "lbl" : "obsolete threshability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000446", + "id" : "http://purl.obolibrary.org/obo/pato#towards", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Relation binding a relational quality or disposition to the relevant type of entity." } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute percentage value" + "type" : "PROPERTY", + "lbl" : "towards" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000445", + "id" : "http://purl.obolibrary.org/obo/PATO_0000474", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -2449,133 +2605,119 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative percentage value" + "lbl" : "obsolete shattering value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001775", + "id" : "http://purl.obolibrary.org/obo/ENVO_01001055", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the dorsal-ventral axis.", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] + "val" : "An environmental system determined by part of a living or dead animal, or a whole small animal.", + "xrefs" : [ ] + } }, "type" : "CLASS", - "lbl" : "dorsal-ventral polarity" + "lbl" : "environment associated with an animal part or small animal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000448", + "id" : "http://purl.obolibrary.org/obo/ENVO_01001057", + "meta" : { + "definition" : { + "val" : "An environmental system determined by part of a living or dead plant, or a whole small plant.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "environment associated with a plant part or small plant" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000408", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001499" } ] }, - "type" : "CLASS", - "lbl" : "obsolete high percentage" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002628", + "id" : "http://purl.obolibrary.org/obo/PATO_0000407", "meta" : { "definition" : { - "val" : "An intensity which is borderline in it its effect or force as compared to baseline or normal.", - "xrefs" : [ ] + "val" : "A quality inhering in a bearer by virtue of the bearer's having a horizontal surface without a slope, tilt, or curvature.", + "xrefs" : [ "web:http://www.merriam-webster.com/" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "plate-like", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-05-26T06:42:21Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "borderline intensity" + "lbl" : "flat" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0044464", + "id" : "http://purl.obolibrary.org/obo/PATO_0001738", "meta" : { "definition" : { - "val" : "OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms.", - "xrefs" : [ "GOC:jl" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking physically interaction with another entity.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_pir" ], - "xrefs" : [ { - "val" : "NIF_Subcellular:sao628508602" - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "protoplast", - "xrefs" : [ "GOC:mah" ] - }, { "pred" : "hasExactSynonym", - "val" : "cellular subcomponent", - "xrefs" : [ "NIF_Subcellular:sao628508602" ] + "val" : "dissociated", + "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", - "val" : "CL:0000000" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/go.owl" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cell part" + "lbl" : "dissociated from" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000447", + "id" : "http://purl.obolibrary.org/obo/PATO_0000409", "meta" : { + "definition" : { + "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting an equatorial diameter greater than its polar diameter.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "oblate spheroid", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete decreased percentage" + "lbl" : "oblate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001778", + "id" : "http://purl.obolibrary.org/obo/PATO_0001739", "meta" : { "definition" : { - "val" : "A strength which is relatively high.", + "val" : "A quality that inheres in an bearer by virtue of how that bearer interacts with radiation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high strength", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001779" } ] }, "type" : "CLASS", - "lbl" : "increased strength" + "lbl" : "radiation quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000449", + "id" : "http://purl.obolibrary.org/obo/PATO_0000400", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -2586,106 +2728,83 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete increased percentage" + "lbl" : "obsolete morphology value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001779", + "id" : "http://purl.obolibrary.org/obo/PATO_0001732", "meta" : { "definition" : { - "val" : "A strength which is relatively low.", + "val" : "A quality inhering in a plant by virtue of the bearer's disposition to not shed any body part.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "weak", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001778" } ] }, "type" : "CLASS", - "lbl" : "decreased strength" + "lbl" : "non-deciduous (any body part)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001772", + "id" : "http://purl.obolibrary.org/obo/PATO_0001733", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being extended on all sides of another entity simultaneously.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A quality inhering in a plant by virtue of the bearer's disposition to retain foliage.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "encircling", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "wrapping", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "enclosing", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Nedd to add reciprocal of relationship to 'surrounded by' PATO:0005016." } ] }, "type" : "CLASS", - "lbl" : "surrounding" + "lbl" : "evergreen (plant)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000440", + "id" : "http://purl.obolibrary.org/obo/PATO_0000402", "meta" : { "definition" : { - "val" : "A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A branchiness quality inhering in a bearer by virtue of the bearer's having branches.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "ramified", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "ramiform", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000330" + "val" : "http://purl.obolibrary.org/obo/PATO_0000414" } ] }, "type" : "CLASS", - "lbl" : "regular spatial pattern" + "lbl" : "branched" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001773", + "id" : "http://purl.obolibrary.org/obo/PATO_0001730", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having only one phase or stage.", - "xrefs" : [ "hefreedictionary.com:hefreedictionary.com" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to shed body parts.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "monophasic" + "lbl" : "deciduous (generic)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000442", + "id" : "http://purl.obolibrary.org/obo/PATO_0000401", "meta" : { - "definition" : { - "val" : "A sleep pattern quality inhering in a bearer by virtue of the bearer's inability to sleep.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Consider NBO:0000422." - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { @@ -2694,202 +2813,208 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete insomnia" + "lbl" : "obsolete shape value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001770", + "id" : "http://purl.obolibrary.org/obo/PATO_0001731", "meta" : { "definition" : { - "val" : "A viability quality inhering in a population by virtue of some of it's members' ability to survive.", - "xrefs" : [ "PATOC:CVC" ] + "val" : "A quality inhering in a plant by virtue of the bearer's disposition to shed foliage.", + "xrefs" : [ "PATOC:cjm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "semi-viable" + "lbl" : "deciduous (plant)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000441", + "id" : "http://purl.obolibrary.org/obo/PATO_0001736", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's marked by tedious repetition.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of solids.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "solid", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "repetitive" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001771", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0002259" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - } ] - }, - "type" : "CLASS" + "lbl" : "solid configuration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001309", + "id" : "http://purl.obolibrary.org/obo/PATO_0000404", "meta" : { "definition" : { - "val" : "A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point.", - "xrefs" : [ "PATOC:mellybelly" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals).", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "time", + "val" : "helicoid", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "helicoidal", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "helical", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "period", + "val" : "spiral", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "helix-shaped", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000081" + "val" : "PATO:0001363" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000415" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "duration" + "lbl" : "coiled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000455", + "id" : "http://purl.obolibrary.org/obo/PATO_0000403", "meta" : { "definition" : { - "val" : "A maturity quality inhering in a bearer by virtue of the bearer's having arrived at the onset of puberty (the age at which sex glands become functional) but not yet fully mature.", + "val" : "A concave quality inhering in a bearer by virtue of the bearer's resembling a groove or fissure.", "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "pubescent" + "lbl" : "cleft" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001787", + "id" : "http://purl.obolibrary.org/obo/PATO_0001737", "meta" : { "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis.", + "val" : "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of gases.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "gas", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "rotational curvature" + "lbl" : "gaseus configuration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001303", + "id" : "http://purl.obolibrary.org/obo/PATO_0001734", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing.", - "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] + "val" : "A quality inhering in a plant by virtue of the bearer's disposition to being between evergeen and deciduous.", + "xrefs" : [ "PATOC:cjm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "variability of a physical quality", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "variability" + "lbl" : "semi-deciduous(plant)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001788", + "id" : "http://purl.obolibrary.org/obo/PATO_0000406", "meta" : { "definition" : { - "val" : "A density which is higher relative to the normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high density", + "pred" : "hasNarrowSynonym", + "val" : "bowing", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "curled", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001790" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased mass density" + "lbl" : "curved" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001304", + "id" : "http://purl.obolibrary.org/obo/PATO_0001735", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of liquids.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "liquid", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "variability of temperature" + "lbl" : "liquid configuration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000454", + "id" : "http://purl.obolibrary.org/obo/PATO_0000405", "meta" : { "definition" : { - "val" : "A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections.", + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having parallel chains in undulate fashion on the border.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "hairy" + "lbl" : "curled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001785", + "id" : "http://purl.obolibrary.org/obo/PATO_0000419", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved outward.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "TODO: obsolete, definition too ambiguous." + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001997" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "splayed" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000457", + "id" : "http://purl.obolibrary.org/obo/PATO_0000418", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -2900,454 +3025,361 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete deviation(from_normal) value" + "lbl" : "obsolete relative number value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002632", + "id" : "http://purl.obolibrary.org/obo/PATO_0001749", "meta" : { "definition" : { - "val" : "A quality in which the effect or outcome is not primary or the focus of the observation.", - "xrefs" : [ "PATO:MAH" ] + "val" : "A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth.", + "xrefs" : [ "PATOC:mh" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pedomorphic growth", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "hypoplastic growth", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-05-26T13:17:45Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001752" } ] }, "type" : "CLASS", - "lbl" : "secondary" + "lbl" : "paedomorphic growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001301", + "id" : "http://purl.obolibrary.org/obo/PATO_0020001", "meta" : { "definition" : { - "val" : "An optical quality that is the mixture, purity or pattern of wavelengths of light perceived by the observer.", + "val" : "A biological sex quality inhering in an individual based upon genotypic composition that confers the capability for an organism to differentiate male gonads.", "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XY, though abnormal XXY and XYY would also result in a male phenotypic outcome." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "mah" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "chromatic property" + "lbl" : "male genotypic sex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001786", + "id" : "http://purl.obolibrary.org/obo/PATO_0020002", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions.", - "xrefs" : [ "die.net:die.net" ] + "val" : "A biological sex quality inhering in an individual or a population based upon genotypic composition that confers the capability for an organism to differentiate female gonads.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "subdivided", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "divided", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "forked", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "septate", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "clefted", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "split" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000456", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XX, though abnormal X0 and XXX would also result in a female phenotypic outcome." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "mah" } ] }, "type" : "CLASS", - "lbl" : "obsolete abstract" + "lbl" : "female genotypic sex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001302", + "id" : "http://purl.obolibrary.org/obo/PATO_0000411", "meta" : { "definition" : { - "val" : "A color consisting of red and orange hue with a slight amount of gray.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "round", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "rounded", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "vermilion" + "lbl" : "circular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001307", + "id" : "http://purl.obolibrary.org/obo/PATO_0001743", "meta" : { "definition" : { - "val" : "A variability of temperature which is relatively low.", + "val" : "A radioactivity which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low variability of temperature", + "val" : "low radioactivity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001308" - } ] - }, - "type" : "CLASS", - "lbl" : "decreased variability of temperature" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000459", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "http://purl.obolibrary.org/obo/PATO_0001742" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative quantity value" + "lbl" : "decreased radioactivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000458", + "id" : "http://purl.obolibrary.org/obo/PATO_0000410", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having leaflets or leaflets-like structures on each side of a common axis.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "of a leaf shape", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "feather-like", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete presence value" + "lbl" : "pinnate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001308", + "id" : "http://purl.obolibrary.org/obo/PATO_0001744", "meta" : { "definition" : { - "val" : "A variability of temperature which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A radiation quality inhering in a bearer by virtue of what the bearer receives as a result of being exposed to ionizing radiation.", + "xrefs" : [ "hps:hps" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high variability of temperature", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001307" } ] }, "type" : "CLASS", - "lbl" : "increased variability of temperature" + "lbl" : "radiation exposure" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001789", + "id" : "http://purl.obolibrary.org/obo/PATO_0000413", "meta" : { "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's having a shape resembling a dome.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having an equal-sided rectangular form.", + "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "domed" + "lbl" : "square" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001305", + "id" : "http://purl.obolibrary.org/obo/PATO_0001741", "meta" : { "definition" : { - "val" : "A temperature which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A radiation quality inhering in bearer by virtue of the bearer's exhibiting or being caused by radioactivity.", + "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high temperature", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "hot", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001306" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000678" } ] }, "type" : "CLASS", - "lbl" : "increased temperature" + "lbl" : "radioactive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001306", + "id" : "http://purl.obolibrary.org/obo/PATO_0001742", "meta" : { "definition" : { - "val" : "A temperature which is relatively low.", + "val" : "A radioactivity which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "cold", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "low temperature", + "val" : "high radioactivity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000677" - }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001305" + "val" : "http://purl.obolibrary.org/obo/PATO_0001743" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased temperature" + "lbl" : "increased radioactivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001780", + "id" : "http://purl.obolibrary.org/obo/PATO_0000412", "meta" : { - "definition" : { - "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally developed, usually due to malnutrition.", - "xrefs" : [ "Wiikipedia:Wiikipedia" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "dystrophied", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "dystrophy", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000585" } ] }, - "type" : "CLASS", - "lbl" : "dystrophic" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000057", + "id" : "http://purl.obolibrary.org/obo/PATO_0000415", "meta" : { "definition" : { - "val" : "a relation between a process and a continuant, in which the continuant is somehow involved in the process", - "xrefs" : [ ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being not curled or wound (especially in concentric rings or spirals).", + "xrefs" : [ "WordNet:WordNet" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this process has participant this input material (or this output material)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this blood coagulation has participant this blood clot" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has_participant" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "has participant" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this investigation has participant this investigator" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.org/dc/elements/1.1/source", - "val" : "http://www.obofoundry.org/ro/#OBO_REL:has_participant" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000404" } ] }, - "type" : "PROPERTY", - "lbl" : "has participant" + "type" : "CLASS", + "lbl" : "uncoiled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002630", + "id" : "http://purl.obolibrary.org/obo/PATO_0001747", "meta" : { "definition" : { - "val" : "An occurrence quality inhering in a bearer by virtue of the bearer's having a course that occurs occasionally.", - "xrefs" : [ "PATO:MAH" ] + "val" : "A radiation exposure quality inhering in an organ by virtue of the multiplication of an equivalent dose to that organ multiplied by the tissue weighting factor for that organ.", + "xrefs" : [ "arpansa:arpansa" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-05-26T06:50:16Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "episodic" + "lbl" : "radiation effective dose" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000451", + "id" : "http://purl.obolibrary.org/obo/PATO_0001748", "meta" : { + "definition" : { + "val" : "A shape quality in which a portion of the outermost boundary of an entity folds in space such that a portion that was originally convex is now concave.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete pilosity value" + "lbl" : "invaginated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001783", + "id" : "http://purl.obolibrary.org/obo/PATO_0000414", "meta" : { "definition" : { - "val" : "An intensity which is relatively low.", + "val" : "A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low intensity", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001782" + "val" : "http://purl.obolibrary.org/obo/PATO_0000402" } ] }, "type" : "CLASS", - "lbl" : "decreased intensity" + "lbl" : "unbranched" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002631", + "id" : "http://purl.obolibrary.org/obo/PATO_0001745", "meta" : { "definition" : { - "val" : "An occurrence of a process during which time there is an inability to change the course, extent, or repetition of the process.", - "xrefs" : [ "PATO:MAH" ] + "val" : "A radiation exposure quality inhering in a substance by virtue of the radiation energy \"deposited\" in a kilogram of a substance.", + "xrefs" : [ "arpansa:arpansa" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-05-26T13:09:29Z" } ] }, "type" : "CLASS", - "lbl" : "refractory" + "lbl" : "radiation absorbed dose" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000450", + "id" : "http://purl.obolibrary.org/obo/PATO_0000417", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - } ] - }, + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, "type" : "CLASS", - "lbl" : "obsolete low percentage" + "lbl" : "obsolete absolute number value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001784", + "id" : "http://purl.obolibrary.org/obo/PATO_0000416", "meta" : { - "definition" : { - "val" : "A branched quality inhering in a bearer by virtue of the bearer's being divided into two branches.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "forked", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "bifid", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001572" } ] }, "type" : "CLASS", - "lbl" : "bifurcated" + "lbl" : "obsolete count value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001300", + "id" : "http://purl.obolibrary.org/obo/PATO_0001746", "meta" : { "definition" : { - "val" : "An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A radiation exposure quality inhering in a tissue by virtue of the relation between the absorbed dose to the effective biological damage of the radiation to that tissue.", + "xrefs" : [ "arpansa:arpansa" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "optical quality" + "lbl" : "radiation equivalent dose" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000453", + "id" : "http://purl.obolibrary.org/obo/PATO_0001740", "meta" : { "definition" : { - "val" : "A pilosity quality inhering in a bearer by virtue of the bearer's lack of hairs or bristles.", - "xrefs" : [ "PATOC:CJM", "PATOC:GVG" ] + "val" : "A radiation quality inhering in a radioactive substance by virtue of its transformation (disintegration) rate.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "hairless", + "pred" : "hasExactSynonym", + "val" : "radioactivity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -3356,90 +3388,81 @@ } ] }, "type" : "CLASS", - "lbl" : "glabrous" + "lbl" : "activity (of a radionuclide)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001781", + "id" : "http://purl.obolibrary.org/obo/pato#has_ratio_quality", "meta" : { - "definition" : { - "val" : "A thickness quality which lacks pattern.", - "xrefs" : [ "PATOC:GVG" ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "irregular thickness" + "type" : "PROPERTY", + "lbl" : "has_ratio_quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001782", + "id" : "http://purl.obolibrary.org/obo/PATO_0020000", "meta" : { "definition" : { - "val" : "An intensity which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A biological sex quality inhering in an individual based upon genotypic composition of sex chromosomes.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high intensity", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001783" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, we have XY, XX, though abnormal XXY, X0, XYY, and other combinations are possible." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "mah" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased intensity" + "lbl" : "genotypic sex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000452", + "id" : "http://purl.obolibrary.org/obo/PATO_0000429", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000689" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative pilosity value" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001314", + "id" : "http://purl.obolibrary.org/obo/PATO_0000422", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Auxotrophic" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001313" + "val" : "http://purl.obolibrary.org/obo/PATO_0000423" } ] }, "type" : "CLASS", - "lbl" : "variant temperature" + "lbl" : "auxotrophic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001798", + "id" : "http://purl.obolibrary.org/obo/PATO_0001754", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A peramorphic growth quality which is due to an earlier onset.", + "xrefs" : [ "PATOC:mh" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "twisted", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "tightly curled", + "pred" : "hasExactSynonym", + "val" : "precocious growth", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -3448,38 +3471,24 @@ } ] }, "type" : "CLASS", - "lbl" : "kinked" + "lbl" : "predisplaced growth" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000052", + "id" : "http://purl.obolibrary.org/obo/PATO_0001755", "meta" : { "definition" : { - "val" : "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence", - "xrefs" : [ ] + "val" : "A peramorphic growth quality which is due to a delayed offset.", + "xrefs" : [ "PATOC:mh" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this fragility inheres in this vase" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "inheres_in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this red color inheres in this apple" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "inheres in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "A dependent inheres in its bearer at all times for which the dependent exists." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "inheres in" + "type" : "CLASS", + "lbl" : "hypermorphic growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000466", + "id" : "http://purl.obolibrary.org/obo/PATO_0000421", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -3490,269 +3499,227 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete none" + "lbl" : "obsolete nutritional value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001315", + "id" : "http://purl.obolibrary.org/obo/PATO_0001752", "meta" : { "definition" : { - "val" : "A temperature which is increased by a low degree.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth.", + "xrefs" : [ "PATOC:mh" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hyperplastic growth", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001749" } ] }, "type" : "CLASS", - "lbl" : "mild increased temperature" + "lbl" : "peramorphic growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001799", + "id" : "http://purl.obolibrary.org/obo/PATO_0000424", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's exhibiting disturbance of its smoothness or regularity.", - "xrefs" : [ ".thefreedictionary.com:.thefreedictionary.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "ruffled" + "lbl" : "obsolete occurence value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000465", + "id" : "http://purl.obolibrary.org/obo/PATO_0000423", "meta" : { + "definition" : { + "val" : "A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Prototrophic" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000422" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete marked" + "lbl" : "prototrophic" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002233", + "id" : "http://purl.obolibrary.org/obo/PATO_0001753", "meta" : { "definition" : { - "val" : "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.", - "xrefs" : [ ] + "val" : "A peramorphic growth quality which is due to an increased rate.", + "xrefs" : [ "PATOC:mh" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "consumes" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "has input" + "type" : "CLASS", + "lbl" : "accelerated growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000468", + "id" : "http://purl.obolibrary.org/obo/PATO_0000426", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001997" + "val" : "http://purl.obolibrary.org/obo/PATO_0000690" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001796", + "id" : "http://purl.obolibrary.org/obo/PATO_0001758", "meta" : { "definition" : { - "val" : "A coiling which is relatively low.", + "val" : "A conductivity quality inhering in motor and sensory nerves by virtue of the bearer's ability to convey electricity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low coiling", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001795" } ] }, "type" : "CLASS", - "lbl" : "decreased coiling" + "lbl" : "nerve conductivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001312", + "id" : "http://purl.obolibrary.org/obo/PATO_0001759", "meta" : { "definition" : { - "val" : "A duration of temperature which is greater relative to the normal or average in respect to the quality of temperature of enduring or continuing in time.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A composition quality inhering in a bearer by virtue of the bearer's containing granules.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high duration of temperature", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001311" } ] }, "type" : "CLASS", - "lbl" : "increased duration of temperature" + "lbl" : "granular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001797", + "id" : "http://purl.obolibrary.org/obo/PATO_0000425", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001883" - } ] - }, - "type" : "CLASS" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001313", - "meta" : { - "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature.", - "xrefs" : [ "PATO:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001314" } ] }, "type" : "CLASS", - "lbl" : "invariant temperature" + "lbl" : "obsolete continual" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000467", + "id" : "http://purl.obolibrary.org/obo/PATO_0001756", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's existence.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A conductivity quality inhering in a bearer by virtue of the bearer's disposition to spontaneous transfer of thermal energy from a region of higher temperature to a region of lower temperature.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Heat_conduction" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#absent_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "present in organism", + "pred" : "hasExactSynonym", + "val" : "thermal conduction", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000462" } ] }, "type" : "CLASS", - "lbl" : "present" + "lbl" : "heat conductivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001318", + "id" : "http://purl.obolibrary.org/obo/PATO_0000428", "meta" : { "definition" : { - "val" : "A discrimination quality in a bearer by virtue of the bearer's being incapable perceiving differences between two or more stimuli.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's once or in or a few unpredictable instances.", + "xrefs" : [ "PATO:MAH", "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001319" + "val" : "http://purl.obolibrary.org/obo/PATO_0000427" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "indiscriminate" + "lbl" : "sporadic" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000056", + "id" : "http://purl.obolibrary.org/obo/PATO_0000427", "meta" : { "definition" : { - "val" : "a relation between a continuant and a process, in which the continuant is somehow involved in the process", - "xrefs" : [ ] + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's occurring or appearing again or repeatedly.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this investigator participates in this investigation" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this input material (or this output material) participates in this process" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "participates in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "participates_in" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this blood clot participates in this blood coagulation" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000428" } ] }, - "type" : "PROPERTY", - "lbl" : "participates in" + "type" : "CLASS", + "lbl" : "recurrent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000469", + "id" : "http://purl.obolibrary.org/obo/PATO_0001757", "meta" : { + "definition" : { + "val" : "A conductivity quality inhering in a bearer by virtue of the bearer's ability to convey electricity.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Electrical_conduction" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete high" + "lbl" : "electrical conductivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001319", + "id" : "http://purl.obolibrary.org/obo/PATO_0001750", "meta" : { "definition" : { - "val" : "A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A paedomorphic growth quality which is due to a delayed onset.", + "xrefs" : [ "PATOC:mh" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001318" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "discriminate" + "lbl" : "postdisplaced growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001316", + "id" : "http://purl.obolibrary.org/obo/PATO_0001751", "meta" : { "definition" : { - "val" : "A temperature which is increased by a medium degree.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A paedomorphic growth quality which is due to an ealier offset.", + "xrefs" : [ "PATOC:mh" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -3761,311 +3728,264 @@ } ] }, "type" : "CLASS", - "lbl" : "moderate increased temperature" + "lbl" : "progenetic growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001317", + "id" : "http://purl.obolibrary.org/obo/PATO_0000420", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000470" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/pato#similar_in_magnitude_relative_to", "meta" : { "definition" : { - "val" : "A temperature which is increased by a high degree.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "severe increased temperature" + "type" : "PROPERTY", + "lbl" : "similar_in_magnitude_relative_to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0000053", + "id" : "http://purl.obolibrary.org/obo/PATO_0000433", "meta" : { "definition" : { - "val" : "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", - "xrefs" : [ ] + "val" : "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a father.", + "xrefs" : [ "WordNet:WordNet" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this vase is bearer of this fragility" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "is bearer of" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "bearer_of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "bearer of" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this apple is bearer of this red color" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "bearer of" + "type" : "CLASS", + "lbl" : "obsolete paternal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001790", + "id" : "http://purl.obolibrary.org/obo/PATO_0001765", "meta" : { "definition" : { - "val" : "A density which is lower relative to the normal or average.", + "val" : "An age which is low relative to the normal or average.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low density", + "val" : "low age", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001788" + "val" : "http://purl.obolibrary.org/obo/PATO_0001764" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased mass density" + "lbl" : "decreased age" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001791", + "id" : "http://purl.obolibrary.org/obo/PATO_0001766", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being confined or restricted to multiple locations.", + "val" : "A cellular quality inhering in a cell by virtue of its anisotropic intracellular organization.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "multi-focal", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", + "val" : "PATO:0001769" } ] }, "type" : "CLASS", - "lbl" : "multi-localised" + "lbl" : "obsolete cellular polarity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000460", + "id" : "http://purl.obolibrary.org/obo/PATO_0000432", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's deviation from normal or average.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#abnormal_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "aberrant", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "atypical", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "atypia", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "defective", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, "type" : "CLASS", - "lbl" : "abnormal" + "lbl" : "obsolete parental type value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000462", + "id" : "http://purl.obolibrary.org/obo/PATO_0001763", "meta" : { - "definition" : { - "val" : "A quality denoting the lack of an entity.", - "xrefs" : [ "thefreedictionary.:thefreedictionary." ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#absent_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "absent from organism", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "absence", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000467" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "See documentation here: http://code.google.com/p/phenotype-ontologies/wiki/ModelingOfAbsence" + "val" : "http://purl.obolibrary.org/obo/PATO_0001760" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001996" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "absent" + "lbl" : "female semi-sterile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001794", + "id" : "http://purl.obolibrary.org/obo/PATO_0000435", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being wound in a continuous series of loops.", - "xrefs" : [ "Online_Dictionary:Online_Dictionary" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "coiling" + "lbl" : "obsolete pattern value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001310", + "id" : "http://purl.obolibrary.org/obo/PATO_0001764", "meta" : { "definition" : { - "val" : "A duration quality of a process inhering in a bearer by virtue of the bearer's duration of exhibition of thermal energy.", + "val" : "An age which is high relative to the normal or average.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high age", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "TODO: obsolete? I don't know what this means." + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001765" } ] }, "type" : "CLASS", - "lbl" : "duration of temperature" + "lbl" : "increased age" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001795", + "id" : "http://purl.obolibrary.org/obo/PATO_0000434", "meta" : { "definition" : { - "val" : "A coiling which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a mother.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high coiling", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001796" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "increased coiling" + "lbl" : "obsolete maternal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000461", + "id" : "http://purl.obolibrary.org/obo/PATO_0001769", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an axis.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#abnormal_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "average", - "xrefs" : [ ] + "val" : "cellular polarity", + "xrefs" : [ "PATOC:MAH" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "positional polarity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000437", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000460" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal" + "lbl" : "obsolete sleep pattern value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001311", + "id" : "http://purl.obolibrary.org/obo/PATO_0000436", "meta" : { - "definition" : { - "val" : "A duration of temperature which is lesser relative to the normal or average enduring or continuing in time.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001312" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "decreased duration of temperature" + "lbl" : "obsolete concrete" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001792", + "id" : "http://purl.obolibrary.org/obo/PATO_0000439", "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located on left side of from the a another entity.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "left side of" + "lbl" : "obsolete perseverative" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000464", + "id" : "http://purl.obolibrary.org/obo/PATO_0001767", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of not being clearly visible.", - "xrefs" : [ "thefreedictionary:thefreedictionary" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "faint", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000463" } ] }, "type" : "CLASS", - "lbl" : "inconspicuous" + "lbl" : "semi-fertile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000463", + "id" : "http://purl.obolibrary.org/obo/PATO_0000438", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of being clearly visible.", - "xrefs" : [ "thefreedictionary:thefreedictionary" ] + "val" : "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation.", + "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "uniform", + "xrefs" : [ ] + }, { "pred" : "hasRelatedSynonym", - "val" : "distinct", + "val" : "constant", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -4073,63 +3993,57 @@ "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000464" + "val" : "http://purl.obolibrary.org/obo/PATO_0001227" } ] }, "type" : "CLASS", - "lbl" : "conspicuous" + "lbl" : "invariant" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001793", + "id" : "http://purl.obolibrary.org/obo/PATO_0001768", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located on right side of a another entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A viability quality inhering in a bearer or a population by virtue of some of it's members' inability to survive to reproduce.", + "xrefs" : [ "PATOC:CVC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "right side of" + "lbl" : "semi-lethal (sensu genetics)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000477", + "id" : "http://purl.obolibrary.org/obo/PATO_0001761", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001762" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete good value" + "lbl" : "male semi-fertile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001325", + "id" : "http://purl.obolibrary.org/obo/PATO_0001762", "meta" : { - "definition" : { - "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's having equal proportion around a central point or axis.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "centric", - "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0002-2908-3327" ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001761" } ] }, "type" : "CLASS", - "lbl" : "radial symmetry" + "lbl" : "male semi-sterile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001326", + "id" : "http://purl.obolibrary.org/obo/PATO_0000431", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" @@ -4139,22 +4053,23 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete left-right symmetry" + "lbl" : "obsolete odor value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000476", + "id" : "http://purl.obolibrary.org/obo/PATO_0001760", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001763" } ] }, "type" : "CLASS", - "lbl" : "obsolete bad value" + "lbl" : "female semi-fertile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000479", + "id" : "http://purl.obolibrary.org/obo/PATO_0000430", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -4165,64 +4080,37 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete regulation value" + "lbl" : "obsolete unique" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001323", + "id" : "http://purl.obolibrary.org/obo/PATO_0001707", "meta" : { "definition" : { - "val" : "A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Area" ] + "val" : "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting marked activity.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001706" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "area" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002222", - "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." - }, { - "pred" : "http://purl.org/dc/terms/source", - "val" : "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" - } ] - }, - "type" : "PROPERTY", - "lbl" : "temporally related to" + "lbl" : "behavioural active" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001324", + "id" : "http://purl.obolibrary.org/obo/PATO_0001708", "meta" : { "definition" : { - "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being symmetric about a plane running from its frontal end to its caudal end (head to tail), and has nearly identical right and left halves.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Bilateral_symmetry" ] + "val" : "A size quality inhering in an bearer by virtue of the bearer's extension in one dimension.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "left-right symmetry", + "val" : "1-D size", "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "pennate", - "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0002-2908-3327" ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -4230,434 +4118,398 @@ } ] }, "type" : "CLASS", - "lbl" : "bilateral symmetry" + "lbl" : "1-D extent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000478", + "id" : "http://purl.obolibrary.org/obo/PATO_0001705", "meta" : { + "definition" : { + "val" : "A color consisting of violet hue and low brightness.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete poor value" + "lbl" : "dark violet" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001329", + "id" : "http://purl.obolibrary.org/obo/PATO_0001706", "meta" : { "definition" : { - "val" : "A flavor quality inhering in a bearer by virtue of the bearer's having flavour.", + "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's disposition to lack activity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001707" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "flavourful" + "lbl" : "behavioural inactive" }, { - "id" : "http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to", + "id" : "http://purl.obolibrary.org/obo/PATO_0001709", "meta" : { "definition" : { - "val" : "q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A size quality inhering in an bearer by virtue of the bearer's extension in two dimensions.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "2-D size", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "different_in_magnitude_relative_to" + "type" : "CLASS", + "lbl" : "2-D extent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001327", + "id" : "http://purl.obolibrary.org/obo/PATO_0001700", "meta" : { "definition" : { - "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by only one longitudinal plane passing through the axis.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A sleep pattern which has irregular start and/or end times.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001699" } ] }, "type" : "CLASS", - "lbl" : "zygomorphic" + "lbl" : "irregular sleep pattern" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001328", + "id" : "http://purl.obolibrary.org/obo/PATO_0001703", "meta" : { "definition" : { - "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by any longitudinal plane passing through the axis.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A color consisting of violet hue and low saturation.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pale violet", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "actinomorphic" + "lbl" : "desaturated violet" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002217", + "id" : "http://purl.obolibrary.org/obo/PATO_0001704", "meta" : { "definition" : { - "val" : "x actively participates in y if and only if x participates in y and x realizes some active role", - "xrefs" : [ ] + "val" : "A color consisting of violet hue and high brightness.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "agent in" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "actively participates in" + "type" : "CLASS", + "lbl" : "light violet" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002218", + "id" : "http://purl.obolibrary.org/obo/PATO_0001701", "meta" : { "definition" : { - "val" : "x has participant y if and only if x realizes some active role that inheres in y", - "xrefs" : [ ] + "val" : "A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development.", + "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "This may be obsoleted and replaced by the original 'has agent' relation" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has agent" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "'heart development' has active participant some Shh protein" - } ] - }, - "type" : "PROPERTY", - "lbl" : "obsolete has active participant" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000471", - "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001501" } ] }, "type" : "CLASS", - "lbl" : "obsolete low" + "lbl" : "mature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000470", + "id" : "http://purl.obolibrary.org/obo/PATO_0001702", "meta" : { "definition" : { - "val" : "An amount which is relatively high.", + "val" : "A color consisting of violet hue and high saturation.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "present in greater numbers in organism", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "accessory", - "xrefs" : [ ] - }, { "pred" : "hasRelatedSynonym", - "val" : "increased", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "supernumerary", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "increased number", + "val" : "bright violet", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001997" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000650" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000420" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased amount" + "lbl" : "saturated violet" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002213", + "id" : "http://purl.obolibrary.org/obo/PATO_0001718", "meta" : { "definition" : { - "val" : "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", - "xrefs" : [ ] + "val" : "A quality that exists by virtue of the luminous intensity per unit area projected in a given direction.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Luminance" ] }, - "xrefs" : [ { - "val" : "RO:0002213" - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "external" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "positively regulates (process to process)" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002211" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "positively_regulates" + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "positively regulates" + "type" : "CLASS", + "lbl" : "luminance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000473", + "id" : "http://purl.obolibrary.org/obo/PATO_0001719", "meta" : { + "definition" : { + "val" : "A behavioral quality which holds by virtue of whether the bearer exhibits the ability to receive another agentitive entity.", + "xrefs" : [ "PATOC:cjm" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative_quality value" + "lbl" : "receptivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001321", + "id" : "http://purl.obolibrary.org/obo/PATO_0001716", "meta" : { "definition" : { - "val" : "An angle which is 90 degrees to another entity.", - "xrefs" : [ "thesaurus.math:thesaurus.math" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "resilient", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "strong", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "tough", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001362" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "right angle to" + "lbl" : "non-fragile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000472", + "id" : "http://purl.obolibrary.org/obo/PATO_0001717", "meta" : { + "definition" : { + "val" : "A radiation emitting quality which obtains by the intensity of the bearer emitted radiation.", + "xrefs" : [ "PATOC:GVG" ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete quality value" + "lbl" : "radiation emitting intensity quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001322", + "id" : "http://purl.obolibrary.org/obo/PATO_0001710", "meta" : { "definition" : { - "val" : "An angle which is 180 degrees to another entity.", - "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + "val" : "A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "3D size", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "TODO: decide on correct parentage." } ] }, "type" : "CLASS", - "lbl" : "straight angle to" + "lbl" : "3-D extent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000475", + "id" : "http://purl.obolibrary.org/obo/PATO_0001711", "meta" : { + "definition" : { + "val" : "An 1-D extent quality inhering in two-dimensional bearer by virtue of being equal to the distance around it.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Perimeter" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete threshability value" + "lbl" : "perimeter" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002215", + "id" : "http://purl.obolibrary.org/obo/RO_0002630", "meta" : { "definition" : { - "val" : "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. ", + "val" : "Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002578" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://www.ncbi.nlm.nih.gov/pubmed/21208450" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has function realized in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "osteoclast SubClassOf 'capable of' some 'bone resorption'" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", - "val" : "RO_0000053 some (RO_0000054 only ?Y)" + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20123131" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly negatively regulates (process to process)" } ] }, "type" : "PROPERTY", - "lbl" : "capable of" + "lbl" : "directly negatively regulates" }, { - "id" : "http://purl.obolibrary.org/obo/pato#towards", + "id" : "http://purl.obolibrary.org/obo/PATO_0001714", "meta" : { + "definition" : { + "val" : "A diameter which is relatively large.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Relation binding a relational quality or disposition to the relevant type of entity." + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001715" } ] }, - "type" : "PROPERTY", - "lbl" : "towards" + "type" : "CLASS", + "lbl" : "increased diameter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000474", + "id" : "http://purl.obolibrary.org/obo/PATO_0001715", "meta" : { + "definition" : { + "val" : "A diameter which is relatively small.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001714" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete shattering value" + "lbl" : "decreased diameter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001320", + "id" : "http://purl.obolibrary.org/obo/PATO_0001712", "meta" : { "definition" : { - "val" : "A pilosity quality of being covered with short hairs or soft down.", + "val" : "A perimeter which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001713" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "pubescent hair" + "lbl" : "increased perimeter" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002216", + "id" : "http://purl.obolibrary.org/obo/PATO_0001713", "meta" : { "definition" : { - "val" : "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.", - "xrefs" : [ ] + "val" : "A perimeter which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has function in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", - "val" : "RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001712" } ] }, - "type" : "PROPERTY", - "lbl" : "capable of part of" + "type" : "CLASS", + "lbl" : "decreased perimeter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000408", + "id" : "http://purl.obolibrary.org/obo/RO_0002629", "meta" : { + "definition" : { + "val" : "Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly positively regulates (process to process)" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001499" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002578" } ] }, - "type" : "CLASS" + "type" : "PROPERTY", + "lbl" : "directly positively regulates" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000407", + "id" : "http://purl.obolibrary.org/obo/PATO_0001729", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having a horizontal surface without a slope, tilt, or curvature.", - "xrefs" : [ "web:http://www.merriam-webster.com/" ] + "val" : "An organismal quality inhering in a bearer by virtue of the bearer's disposition to lose an entitity by natural process.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "plate-like", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "flat" + "lbl" : "shedability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001738", + "id" : "http://purl.obolibrary.org/obo/PATO_0001727", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking physically interaction with another entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's prevailing tendency, mood, or inclination.", + "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "dissociated", + "pred" : "hasRelatedSynonym", + "val" : "tendency", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -4666,1189 +4518,1375 @@ } ] }, "type" : "CLASS", - "lbl" : "dissociated from" + "lbl" : "disposition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000409", + "id" : "http://purl.obolibrary.org/obo/PATO_0001728", "meta" : { "definition" : { - "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting an equatorial diameter greater than its polar diameter.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A disposition inhering in a multi-cellular organism.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "oblate spheroid", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "oblate" + "lbl" : "multi-cellular organismal disposition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001739", + "id" : "http://purl.obolibrary.org/obo/PATO_0001721", "meta" : { "definition" : { - "val" : "A quality that inheres in an bearer by virtue of how that bearer interacts with radiation.", + "val" : "A behavioral quality which holds by virtue of extent of the receptiveness of a male to female advances.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "radiation quality" + "lbl" : "male receptivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000400", + "id" : "http://purl.obolibrary.org/obo/PATO_0001722", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000186" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001720", + "meta" : { + "definition" : { + "val" : "A behavioral quality which holds by virtue of extent of the receptiveness of a female to male advances.", + "xrefs" : [ "GO:GO" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete morphology value" + "lbl" : "female receptivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000884", + "id" : "http://purl.obolibrary.org/obo/PATO_0001725", "meta" : { + "definition" : { + "val" : "A male receptivity which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high male receptivity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001726" } ] }, "type" : "CLASS", - "lbl" : "obsolete hybrid fertility value" + "lbl" : "increased male receptivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001732", + "id" : "http://purl.obolibrary.org/obo/PATO_0001726", "meta" : { "definition" : { - "val" : "A quality inhering in a plant by virtue of the bearer's disposition to not shed any body part.", + "val" : "A male receptivity which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low male receptivity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001725" } ] }, "type" : "CLASS", - "lbl" : "non-deciduous (any body part)" + "lbl" : "decreased male receptivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000883", + "id" : "http://purl.obolibrary.org/obo/PATO_0001723", "meta" : { + "definition" : { + "val" : "A female receptivity which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high female receptivity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001724" } ] }, "type" : "CLASS", - "lbl" : "obsolete female fertility value" + "lbl" : "increased female receptivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001733", + "id" : "http://purl.obolibrary.org/obo/PATO_0001724", "meta" : { "definition" : { - "val" : "A quality inhering in a plant by virtue of the bearer's disposition to retain foliage.", + "val" : "A female receptivity which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low female receptivity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001723" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "evergreen (plant)" + "lbl" : "decreased female receptivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000402", + "id" : "http://purl.obolibrary.org/obo/GO_0005622", "meta" : { "definition" : { - "val" : "A branchiness quality inhering in a bearer by virtue of the bearer's having branches.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.", + "xrefs" : [ "ISBN:0198506732" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], + "xrefs" : [ { + "val" : "Wikipedia:Intracellular" + } ], "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "nucleocytoplasm", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "protoplast", + "xrefs" : [ "GOC:mah" ] + }, { "pred" : "hasExactSynonym", - "val" : "ramified", + "val" : "internal to cell", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "ramiform", + "val" : "protoplasm", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000414" + "val" : "cellular_component" } ] }, "type" : "CLASS", - "lbl" : "branched" + "lbl" : "intracellular" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002211", + "id" : "http://purl.obolibrary.org/obo/GO_0005623", "meta" : { "definition" : { - "val" : "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.", - "xrefs" : [ ] + "val" : "The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.", + "xrefs" : [ "GOC:go_curators" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], "xrefs" : [ { - "val" : "RO:0002211" + "val" : "NIF_Subcellular:sao1813327414" + }, { + "val" : "Wikipedia:Cell_(biology)" } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", - "val" : "false" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "external" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Tanya Berardini" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Hill" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Regulation precludes parthood; the regulatory process may not be within the regulated process." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "GO" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "regulates" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "val" : "cellular_component" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "regulates (processual)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" + "val" : "cell and encapsulating structures" } ] }, - "type" : "PROPERTY", - "lbl" : "regulates" + "type" : "CLASS", + "lbl" : "cell" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001730", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_89593", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "Craniata", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Craniata " + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002186", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to shed body parts.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A molecular quality that inheres in a molecular entity by virtue of whether or not the molecular entity has a separation of electric charge which leads to the molecule having an electric dipole.", + "xrefs" : [ "PATOC:JH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:22:04Z" } ] }, "type" : "CLASS", - "lbl" : "deciduous (generic)" + "lbl" : "polarity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000886", + "id" : "http://purl.obolibrary.org/obo/PATO_0002187", "meta" : { + "definition" : { + "val" : "Polar polarity is a quality that inheres in a molecular entity when the molecular entity is polar, i.e. does possess an electric dipole.", + "xrefs" : [ "PATOC:JH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:22:49Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute litter size value" + "lbl" : "polar polarity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000401", + "id" : "http://purl.obolibrary.org/obo/PATO_0002184", "meta" : { + "definition" : { + "val" : "Cyclic cyclicity inheres in a molecule when the atoms of the molecule do contain at least one cycle in the atom-atom connection paths (through bonds).", + "xrefs" : [ "PATOC:JH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:20:54Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete shape value" + "lbl" : "cyclic cyclicity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002212", + "id" : "http://purl.obolibrary.org/obo/PATO_0002185", "meta" : { "definition" : { - "val" : "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", - "xrefs" : [ ] + "val" : "Acyclic cyclicity inheres in a molecule when the atoms within the molecule do not contain at least one cycle in the atom-atom connection paths (through the bonds).", + "xrefs" : [ "PATOC:JH" ] }, - "xrefs" : [ { - "val" : "RO:0002212" - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "external" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002211" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "negatively_regulates" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:21:39Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "negatively regulates (process to process)" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, - "type" : "PROPERTY", - "lbl" : "negatively regulates" + "type" : "CLASS", + "lbl" : "acyclic cyclicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000885", + "id" : "http://purl.obolibrary.org/obo/PATO_0002188", "meta" : { + "definition" : { + "val" : "A molecular quality which inheres in a molecular entity when the molecular entity does not possess an electrical dipole.", + "xrefs" : [ "PATOC:JH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:24:01Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete male fertility value" + "lbl" : "nonpolar polarity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001731", + "id" : "http://purl.obolibrary.org/obo/PATO_0002189", "meta" : { "definition" : { - "val" : "A quality inhering in a plant by virtue of the bearer's disposition to shed foliage.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "The ease of distortion of the electron cloud of a molecular entity by an electric field.", + "xrefs" : [ "PATOC:JH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:24:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "deciduous (plant)" + "lbl" : "electric polarizability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000404", + "id" : "http://purl.obolibrary.org/obo/PATO_0002182", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being curled or wound (especially in concentric rings or spirals).", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "helical", + "pred" : "hasExactSynonym", + "val" : "relational molecular quality", "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { - "pred" : "hasRelatedSynonym", - "val" : "helicoid", - "xrefs" : [ ] + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0002061" }, { - "pred" : "hasRelatedSynonym", - "val" : "helicoidal", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "spiral", - "xrefs" : [ ] + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "hasRelatedSynonym", - "val" : "helix-shaped", - "xrefs" : [ ] - } ], + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:18:15Z" + } ] + }, + "type" : "CLASS", + "lbl" : "molecular quality" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002183", + "meta" : { + "definition" : { + "val" : "A molecular quality that inheres in a molecular entity by virtue of whether that there is a presence of cycles in the connection of the atoms within the molecular entity.", + "xrefs" : [ "PATOC:JH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001363" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000415" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:19:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "coiled" + "lbl" : "cyclicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001736", + "id" : "http://purl.obolibrary.org/obo/PATO_0002180", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of solids.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being free of curves, bends, or angles.", + "xrefs" : [ "merriam-webster:merriam-webster" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "solid", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-02-28T08:54:59Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "solid configuration" + "lbl" : "straight" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000888", + "id" : "http://purl.obolibrary.org/obo/PATO_0002181", "meta" : { "definition" : { - "val" : "A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.", + "val" : "A positional quality inhering in a bearer by virtue the bearer's being changed in position.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000892" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-01T02:56:33Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "female fertile" + "lbl" : "displaced" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000403", + "id" : "http://purl.obolibrary.org/obo/PATO_0002197", "meta" : { "definition" : { - "val" : "A concave quality inhering in a bearer by virtue of the bearer's resembling a groove or fissure.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A quality that describes the power of an atom to attract electrons to itself .", + "xrefs" : [ "PATOC:JH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:31:15Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "cleft" + "lbl" : "electronegativity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001737", + "id" : "http://purl.obolibrary.org/obo/PATO_0002198", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of gases.", + "val" : "A quality inhering in a bearer by virtue of its constitution.", "xrefs" : [ "PATOC:GVG" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "gas", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-15T04:35:27Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "gaseus configuration" + "lbl" : "quality of a substance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000887", + "id" : "http://purl.obolibrary.org/obo/PATO_0002195", "meta" : { + "definition" : { + "val" : "A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge.", + "xrefs" : [ "PATOC:JH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:30:06Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002196" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative litter size value" + "lbl" : "positive charge" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000406", + "id" : "http://purl.obolibrary.org/obo/PATO_0002196", "meta" : { "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A quality which inheres in a molecular entity by virtue of the molecular entity possessing more electrons overall than protons, thus having an overall negative charge.", + "xrefs" : [ "PATOC:JH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "curled", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "bowing", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002195" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:30:39Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "curved" + "lbl" : "negative charge" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001734", + "id" : "http://purl.obolibrary.org/obo/PATO_0002199", "meta" : { "definition" : { - "val" : "A quality inhering in a plant by virtue of the bearer's disposition to being between evergeen and deciduous.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "A quality which inheres in a substance by virtue of the ease with which the substance can be changed from a solid to a liquid state especially by the application of heat.", + "xrefs" : [ "PATOC:JH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-15T04:36:57Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "semi-deciduous(plant)" + "lbl" : "meltability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000405", + "id" : "http://purl.obolibrary.org/obo/PATO_0002190", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having parallel chains in undulate fashion on the border.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A molecular quality that inheres in a molecular entity by virtue of the presence of a conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone.", + "xrefs" : [ "PATOC:JH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:25:27Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "curled" + "lbl" : "aromaticity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001735", + "id" : "http://purl.obolibrary.org/obo/PATO_0002193", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's parts having the arrangement which exhibits characteristics of liquids.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A molecular quality that inheres in a molecular entity by virtue of the overall electric charge of the molecule, which is due to a comparison between the total number of electrons and the total number of protons.", + "xrefs" : [ "PATOC:JH" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "liquid", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:28:54Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "liquid configuration" + "lbl" : "electric charge" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000889", + "id" : "http://purl.obolibrary.org/obo/PATO_0002194", "meta" : { + "definition" : { + "val" : "A quality which inheres in a molecular entity by virtue of the molecular entity possessing the same amount of electrons overall as protons, thus having an overall neutral charge.", + "xrefs" : [ "PATOC:JH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:29:37Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete cytoplasmic male sterility value" + "lbl" : "neutral charge" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002202", + "id" : "http://purl.obolibrary.org/obo/PATO_0002191", "meta" : { "definition" : { - "val" : "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y", - "xrefs" : [ ] + "val" : "A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone.", + "xrefs" : [ "PATOC:JH" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This is the transitive form of the develops from relation" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002192" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Melissa Haendel" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:25:59Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Terry Meehan" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, - "type" : "PROPERTY", - "lbl" : "develops from" + "type" : "CLASS", + "lbl" : "aromatic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000880", + "id" : "http://purl.obolibrary.org/obo/PATO_0002192", "meta" : { + "definition" : { + "val" : "A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic.", + "xrefs" : [ "PATOC:JH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-03-10T03:26:41Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002191" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete fertility value" + "lbl" : "non-aromatic" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002203", + "id" : "http://purl.obolibrary.org/obo/pato#scalar_slim", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Scalar slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#Subset", + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002148", "meta" : { "definition" : { - "val" : "inverse of develops from", - "xrefs" : [ ] + "val" : "A virulence that is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002147" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Terry Meehan" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-30T05:13:10Z" } ] }, - "type" : "PROPERTY", - "lbl" : "develops into" + "type" : "CLASS", + "lbl" : "increased virulence" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000882", + "id" : "http://purl.obolibrary.org/obo/PATO_0002149", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer exhibiting increased density resulting in exhibiting increased degree of radiopacity (in X-rays).", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-11-03T02:59:08Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete litter size value" + "lbl" : "ivory" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000881", + "id" : "http://purl.obolibrary.org/obo/PATO_0002142", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-28T03:14:54Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete gestational period value" + "lbl" : "bracket" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000419", + "id" : "http://purl.obolibrary.org/obo/PATO_0002143", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-30T02:18:39Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001997" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "sloped downward" }, { - "id" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", + "id" : "http://purl.obolibrary.org/obo/PATO_0002140", "meta" : { "definition" : { - "val" : "q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food.", + "xrefs" : [ "PATOC:VO" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality." + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-26T01:22:27Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002139" } ] }, - "type" : "PROPERTY", - "lbl" : "reciprocal_of" + "type" : "CLASS", + "lbl" : "inedible" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000418", + "id" : "http://purl.obolibrary.org/obo/PATO_0002141", "meta" : { + "definition" : { + "val" : "A density quality which lacks pattern.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-28T01:57:53Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative number value" + "lbl" : "irregular density" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001749", + "id" : "http://purl.obolibrary.org/obo/PATO_0002146", "meta" : { "definition" : { - "val" : "A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced growth.", - "xrefs" : [ "PATOC:mh" ] + "val" : "A quality inhering in a bearer by virtue of the severity of infectious disease caused by the bearer in a target organism.", + "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0001-8941-3984" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "pedomorphic growth", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "hypoplastic growth", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001752" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-30T05:04:06Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "paedomorphic growth" + "lbl" : "virulence" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0020001", + "id" : "http://purl.obolibrary.org/obo/PATO_0002147", "meta" : { "definition" : { - "val" : "A biological sex quality inhering in an individual based upon genotypic composition that confers the capability for an organism to differentiate male gonads.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A virulence that is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "attenuated", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XY, though abnormal XXY and XYY would also result in a male phenotypic outcome." + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002148" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-30T05:05:02Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "mah" + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "male genotypic sex" + "lbl" : "reduced virulence" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0020002", + "id" : "http://purl.obolibrary.org/obo/PATO_0002144", "meta" : { "definition" : { - "val" : "A biological sex quality inhering in an individual or a population based upon genotypic composition that confers the capability for an organism to differentiate female gonads.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A radiopacity that is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-30T03:30:39Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "mah" + "val" : "george" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that the chromosomal constitution of genotypic sex varies in different organisms. In human, this would be XX, though abnormal X0 and XXX would also result in a female phenotypic outcome." + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002145" } ] }, "type" : "CLASS", - "lbl" : "female genotypic sex" + "lbl" : "increased radiopacity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000895", + "id" : "http://purl.obolibrary.org/obo/PATO_0002145", "meta" : { + "definition" : { + "val" : "A radiopacity that is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002144" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-30T03:31:31Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete f1 fertility value" + "lbl" : "decreased radiopacity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000411", + "id" : "http://purl.obolibrary.org/obo/ENVO_01001000", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "An environmental system which is determined by a living organism.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "rounded", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "round", + "val" : "host-associated environment", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "circular" + "lbl" : "environmental system determined by an organism" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001743", + "id" : "http://purl.obolibrary.org/obo/ENVO_01001002", "meta" : { "definition" : { - "val" : "A radioactivity which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An environmental system determined by an animal.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low radioactivity", + "val" : "Metazoan-associated environment", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001742" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "hasBroadSynonym", + "val" : "animal environment", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "decreased radioactivity" + "lbl" : "animal-associated environment" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000410", + "id" : "http://purl.obolibrary.org/obo/PATO_0002159", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001852" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002153", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having leaflets or leaflets-like structures on each side of a common axis.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards the front of an organism.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "feather-like", + "pred" : "hasExactSynonym", + "val" : "splayed anterior", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "of a leaf shape", + "pred" : "hasExactSynonym", + "val" : "splayed superior (human torso)", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-11-06T01:14:31Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "pinnate" + "lbl" : "splayed rostral" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001744", + "id" : "http://purl.obolibrary.org/obo/PATO_0002154", "meta" : { "definition" : { - 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"subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "male infertile", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000891" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-02-03T04:37:15Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "male sterile" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000893", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - 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In human, we have XY, XX, though abnormal XXY, X0, XYY, and other combinations are possible." + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-12-02T05:19:32Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "genotypic sex" + "lbl" : "herniated out of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000429", + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", + "type" : "PROPERTY", + "lbl" : "has_obo_format_version" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002160", "meta" : { "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", @@ -5858,1133 +5896,1555 @@ "val" : "true" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000689" + "val" : "http://purl.obolibrary.org/obo/PATO_0002157" } ] }, "type" : "CLASS" }, { - 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}, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000423" - } ] - }, - "type" : "CLASS", - "lbl" : "auxotrophic" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000421", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-11-11T02:37:52Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete nutritional value" + "lbl" : "bicornuate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001755", + "id" : "http://purl.obolibrary.org/obo/GO_0043085", "meta" : { "definition" : { - 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"lbl" : "obsolete corneal reflex value" + "lbl" : "radiopacity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001704", + "id" : "http://purl.obolibrary.org/obo/PATO_0002133", "meta" : { "definition" : { - "val" : "A color consisting of violet hue and high brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A displaced angular placement quality inhering in a body part by virtue of the bearer's movement closer the medial plane of the body.", + "xrefs" : [ "wikipedia:wikipedia" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is also used in reference to the operation of the muscle in anatomy or musculature." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-13T06:41:39Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "light violet" + "lbl" : "adduction" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000854", + "id" : "http://purl.obolibrary.org/obo/PATO_0002134", "meta" : { + "definition" : { + "val" : "A composition quaity inhering in a bearer by virtue of the bearer's containing of or pertaining to fibrils, or nanoscale fibers.", + "xrefs" : [ "wikipedia:wikipedia" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "fibrillate", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-10-26T12:53:47Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete contact righting reflex value" + "lbl" : "fibrillary" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001701", + "id" : "http://purl.obolibrary.org/obo/PATO_0001699", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's exhibiting complete growth, differentiation, or development.", - "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] + "val" : "A sleep pattern which has regular start and/or end times.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001501" + "val" : "http://purl.obolibrary.org/obo/PATO_0001700" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "mature" + "lbl" : "regular sleep pattern" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000857", + "id" : "http://purl.obolibrary.org/obo/PATO_0000367", "meta" : { + "definition" : { + "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces west.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete lordosis reflex value" + "lbl" : "right" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001702", + "id" : "http://purl.obolibrary.org/obo/PATO_0000366", "meta" : { "definition" : { - "val" : "A color consisting of violet hue and high saturation.", + "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces east.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "bright violet", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "saturated violet" + "lbl" : "left" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000856", + "id" : "http://purl.obolibrary.org/obo/PATO_0001697", "meta" : { + "definition" : { + "val" : "A photosensitivity which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low photosensitivity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001698" } ] }, "type" : "CLASS", - "lbl" : "obsolete flinch reflex value" + "lbl" : "decreased photosensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0043549", + "id" : "http://purl.obolibrary.org/obo/PATO_0000369", "meta" : { - "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.", - "xrefs" : [ "GOC:bf" ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "regulation of kinase activity" + "lbl" : "obsolete unidirectional" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001718", + "id" : "http://purl.obolibrary.org/obo/PATO_0001698", "meta" : { "definition" : { - "val" : "A quality that exists by virtue of the luminous intensity per unit area projected in a given direction.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Luminance" ] + "val" : "A photosensitivity which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high photosensitivity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001697" } ] }, "type" : "CLASS", - "lbl" : "luminance" + "lbl" : "increased photosensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000869", + "id" : "http://purl.obolibrary.org/obo/PATO_0000368", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -6995,89 +7455,92 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete prepulse inhibition value" + "lbl" : "obsolete towards1" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001719", + "id" : "http://purl.obolibrary.org/obo/PATO_0001691", "meta" : { "definition" : { - "val" : "A behavioral quality which holds by virtue of whether the bearer exhibits the ability to receive another agentitive entity.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This refers to the disposition of the bearer." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001690" } ] }, "type" : "CLASS", - "lbl" : "receptivity" + "lbl" : "non-contractile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001716", + "id" : "http://purl.obolibrary.org/obo/PATO_0001692", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's ability to withstand great strain without tearing or breaking.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "resilient", - "xrefs" : [ ] + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001472" }, { - "pred" : "hasRelatedSynonym", - "val" : "strong", - "xrefs" : [ ] + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "hasRelatedSynonym", - "val" : "tough", - "xrefs" : [ ] - } ], + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000361", + "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001362" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "non-fragile" + "lbl" : "obsolete gel consistency value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001717", + "id" : "http://purl.obolibrary.org/obo/PATO_0001690", "meta" : { "definition" : { - "val" : "A radiation emitting quality which obtains by the intensity of the bearer emitted radiation.", + "val" : "A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted.", "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This refers to the disposition of the bearer." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001691" } ] }, "type" : "CLASS", - "lbl" : "radiation emitting intensity quality" + "lbl" : "contractile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001710", + "id" : "http://purl.obolibrary.org/obo/PATO_0000360", "meta" : { - "definition" : { - "val" : "A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "3D size", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "3-D extent" + "lbl" : "obsolete consistency value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000862", + "id" : "http://purl.obolibrary.org/obo/PATO_0000363", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7088,37 +7551,55 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete pupillary reflex value" + "lbl" : "obsolete away" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001711", + "id" : "http://purl.obolibrary.org/obo/PATO_0001695", "meta" : { "definition" : { - "val" : "An 1-D extent quality inhering in two-dimensional bearer by virtue of being equal to the distance around it.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Perimeter" ] + "val" : "A fecundity which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high fecundity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001696" } ] }, "type" : "CLASS", - "lbl" : "perimeter" + "lbl" : "increased fecundity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000861", + "id" : "http://purl.obolibrary.org/obo/PATO_0001696", "meta" : { + "definition" : { + "val" : "A fecundity which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low fecundity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001695" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete proboscis extension reflex value" + "lbl" : "decreased fecundity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000864", + "id" : "http://purl.obolibrary.org/obo/PATO_0000362", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7129,45 +7610,35 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete spinal reflex value" + "lbl" : "obsolete direction value" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002630", + "id" : "http://purl.obolibrary.org/obo/PATO_0001693", "meta" : { "definition" : { - "val" : "Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2.", - "xrefs" : [ ] + "val" : "A viscosity which relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high viscosity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "directly negatively regulates (process to process)" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002578" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - } ] - }, - "type" : "PROPERTY", - "lbl" : "directly negatively regulates" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000863", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001694" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete righting reflex value" + "lbl" : "increased viscosity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001714", + "id" : "http://purl.obolibrary.org/obo/PATO_0000365", "meta" : { "definition" : { - "val" : "A diameter which is relatively large.", + "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], @@ -7176,26 +7647,36 @@ "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001715" + "val" : "http://purl.obolibrary.org/obo/PATO_0000370" } ] }, "type" : "CLASS", - "lbl" : "increased diameter" + "lbl" : "down" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000866", + "id" : "http://purl.obolibrary.org/obo/PATO_0001694", "meta" : { + "definition" : { + "val" : "A viscosity which relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low viscosity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001693" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete suckling reflex value" + "lbl" : "decreased viscosity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000865", + "id" : "http://purl.obolibrary.org/obo/PATO_0000364", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -7206,45 +7687,35 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete startle reflex value" + "lbl" : "obsolete bi-directional" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001715", + "id" : "http://purl.obolibrary.org/obo/PATO_0000378", "meta" : { - "definition" : { - "val" : "A diameter which is relatively small.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001714" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased diameter" + "lbl" : "obsolete absolute frequency value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001712", + "id" : "http://purl.obolibrary.org/obo/PATO_0000377", "meta" : { - "definition" : { - "val" : "A perimeter which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001713" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "increased perimeter" + "lbl" : "obsolete frequency value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000868", + "id" : "http://purl.obolibrary.org/obo/PATO_0000379", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7255,12 +7726,12 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete vibrissae reflex value" + "lbl" : "obsolete relative frequency value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001713", + "id" : "http://purl.obolibrary.org/obo/PATO_0000370", "meta" : { "definition" : { - "val" : "A perimeter which is relatively low.", + "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], @@ -7269,26 +7740,26 @@ "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001712" + "val" : "http://purl.obolibrary.org/obo/PATO_0000365" } ] }, "type" : "CLASS", - "lbl" : "decreased perimeter" + "lbl" : "up" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000867", + "id" : "http://purl.obolibrary.org/obo/PATO_0000372", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete swallowing reflex value" + "lbl" : "obsolete absolute distance value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000860", + "id" : "http://purl.obolibrary.org/obo/PATO_0000371", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7299,154 +7770,102 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete postural reflex value" + "lbl" : "obsolete distance value" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0051174", + "id" : "http://purl.obolibrary.org/obo/GO_0043227", "meta" : { "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.", - "xrefs" : [ "GOC:ai" ] + "val" : "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.", + "xrefs" : [ "GOC:go_curators" ] }, + "xrefs" : [ { + "val" : "NIF_Subcellular:sao414196390" + } ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "regulation of phosphorus metabolism", + "val" : "membrane-enclosed organelle", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "cellular_component" } ] }, "type" : "CLASS", - "lbl" : "regulation of phosphorus metabolic process" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002629", - "meta" : { - "definition" : { - "val" : "Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.", - "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "directly positively regulates (process to process)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002578" - } ] - }, - "type" : "PROPERTY", - "lbl" : "directly positively regulates" + "lbl" : "membrane-bounded organelle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001729", + "id" : "http://purl.obolibrary.org/obo/PATO_0000374", "meta" : { "definition" : { - "val" : "An organismal quality inhering in a bearer by virtue of the bearer's disposition to lose an entitity by natural process.", + "val" : "A distance which is greater relative to the normal or average.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "shedability" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001727", - "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's prevailing tendency, mood, or inclination.", - "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "tendency", + "val" : "long distance", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000375" } ] }, "type" : "CLASS", - "lbl" : "disposition" + "lbl" : "increased distance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001728", + "id" : "http://purl.obolibrary.org/obo/PATO_0000373", "meta" : { - "definition" : { - "val" : "A disposition inhering in a multi-cellular organism.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "multi-cellular organismal disposition" + "lbl" : "obsolete relative distance value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001721", + "id" : "http://purl.obolibrary.org/obo/GO_0043226", "meta" : { "definition" : { - "val" : "A behavioral quality which holds by virtue of extent of the receptiveness of a male to female advances.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane.", + "xrefs" : [ "GOC:go_curators" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "male receptivity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000873", - "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "xrefs" : [ { + "val" : "Wikipedia:Organelle" + }, { + "val" : "NIF_Subcellular:sao1539965131" + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "cellular_component" } ] }, "type" : "CLASS", - "lbl" : "obsolete cataleptic" + "lbl" : "organelle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000872", + "id" : "http://purl.obolibrary.org/obo/GO_0043229", "meta" : { + "definition" : { + "val" : "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.", + "xrefs" : [ "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "cellular_component" } ] }, "type" : "CLASS", - "lbl" : "obsolete anxious" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001722", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000186" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - } ] - }, - "type" : "CLASS" + "lbl" : "intracellular organelle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000875", + "id" : "http://purl.obolibrary.org/obo/PATO_0000376", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -7457,60 +7876,74 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete irritable" + "lbl" : "obsolete flavor value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001720", + "id" : "http://purl.obolibrary.org/obo/PATO_0000375", "meta" : { "definition" : { - "val" : "A behavioral quality which holds by virtue of extent of the receptiveness of a female to male advances.", - "xrefs" : [ "GO:GO" ] + "val" : "A distance which is lesser relative to the normal or average.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "short distance", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000374" } ] }, "type" : "CLASS", - "lbl" : "female receptivity" + "lbl" : "decreased distance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000874", + "id" : "http://purl.obolibrary.org/obo/IAO_0000409", "meta" : { + "definition" : { + "val" : "A denotator type indicates how a term should be interpreted from an ontological perspective.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Barry Smith, Werner Ceusters" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are \"natural kinds\" and the latter arbitrary collections of entities." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Alan Ruttenberg" } ] }, "type" : "CLASS", - "lbl" : "obsolete fearful" + "lbl" : "denotator type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001725", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_314146", + "type" : "CLASS", + "lbl" : "Euarchontoglires" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000389", "meta" : { "definition" : { - "val" : "A male receptivity which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course.", + "xrefs" : [ "dictionary:reference" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high male receptivity", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001726" + "val" : "http://purl.obolibrary.org/obo/PATO_0001863" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased male receptivity" + "lbl" : "acute" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000877", + "id" : "http://purl.obolibrary.org/obo/PATO_0000388", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -7521,104 +7954,111 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute respiratory rate value" + "lbl" : "obsolete intensity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001726", + "id" : "http://purl.obolibrary.org/obo/GO_0043231", "meta" : { "definition" : { - "val" : "A male receptivity which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.", + "xrefs" : [ "GOC:go_curators" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low male receptivity", + "val" : "intracellular membrane-enclosed organelle", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001725" + "val" : "cellular_component" } ] }, "type" : "CLASS", - "lbl" : "decreased male receptivity" + "lbl" : "intracellular membrane-bounded organelle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000876", + "id" : "http://purl.obolibrary.org/obo/PATO_0000381", "meta" : { + "definition" : { + "val" : "A frequency which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "infrequent", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "low frequency", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000380" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete respiratory rate value" + "lbl" : "decreased frequency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001723", + "id" : "http://purl.obolibrary.org/obo/PATO_0000380", "meta" : { "definition" : { - "val" : "A female receptivity which is relatively high.", + "val" : "A frequency which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high female receptivity", + "val" : "high frequency", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "frequent", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001724" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000381" } ] }, "type" : "CLASS", - "lbl" : "increased female receptivity" + "lbl" : "increased frequency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000879", + "id" : "http://purl.obolibrary.org/obo/PATO_0000383", "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.", + "xrefs" : [ "MGED:MGED" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete fecundity value" + "lbl" : "female" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001724", + "id" : "http://purl.obolibrary.org/obo/PATO_0000382", "meta" : { - "definition" : { - "val" : "A female receptivity which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low female receptivity", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001723" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "decreased female receptivity" + "lbl" : "obsolete gender value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000878", + "id" : "http://purl.obolibrary.org/obo/PATO_0000385", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -7629,112 +8069,155 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative respiratory rate value" + "lbl" : "obsolete hardness value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000871", + "id" : "http://purl.obolibrary.org/obo/PATO_0000384", "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.", + "xrefs" : [ "MGED:MGED" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete aggressive" + "lbl" : "male" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000870", + "id" : "http://purl.obolibrary.org/obo/PATO_0000387", "meta" : { + "definition" : { + "val" : "A hardness quality of giving little resistance to pressure.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000386" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative neurobehavioral function value" + "lbl" : "soft" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040023", + "id" : "http://purl.obolibrary.org/obo/PATO_0000386", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body.", - "xrefs" : [ "https://en.wiktionary.org/wiki/distomedial" ] + "val" : "A hardness quality of being rigid and resistant to pressure.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "distomedial", + "pred" : "hasRelatedSynonym", + "val" : "tough", "xrefs" : [ ] }, { - "pred" : "hasExactSynonym", - "val" : "disto-medial orientation", + "pred" : "hasRelatedSynonym", + "val" : "impenetrable", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "firm", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.org/dc/elements/1.1/date", - "val" : "2018-11-19T21:54:33Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000387" } ] }, "type" : "CLASS", - "lbl" : "distomedial orientation" + "lbl" : "hard" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000804", + "id" : "http://purl.obolibrary.org/obo/IAO_0000412", "meta" : { + "definition" : { + "val" : "For external terms/classes, the ontology from which the term was imported", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "imported from" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Melanie Courtot" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" } ] }, - "type" : "CLASS", - "lbl" : "obsolete motor performance value" + "type" : "PROPERTY", + "lbl" : "imported from" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000803", + "id" : "http://purl.obolibrary.org/obo/UBPROP_0000001", "meta" : { + "definition" : { + "val" : "An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class.", + "xrefs" : [ "https://orcid.org/0000-0002-6601-2165" ] + }, + "xrefs" : [ { + "val" : "UBPROP:0000001" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This annotation property may be replaced with an annotation property from an external ontology such as IAO" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "external_definition" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" + } ] + }, + "type" : "PROPERTY", + "lbl" : "external_definition" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000410", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Hard to give a definition for. Intuitively a \"natural kind\" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf" } ] }, + "type" : "INDIVIDUAL", + "lbl" : "universal" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_8287", "type" : "CLASS", - "lbl" : "obsolete tactile response value" + "lbl" : "Sarcopterygii" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040024", + "id" : "http://purl.obolibrary.org/obo/pato#has_dividend_quality", "meta" : { - "definition" : { - "val" : "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism.", - "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] - }, - "synonyms" : [ { - "pred" : "hasBroadSynonym", - "val" : "paired", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, - "type" : "CLASS", - "lbl" : "bilaterally paired" + "type" : "PROPERTY", + "lbl" : "has_dividend_quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000806", + "id" : "http://purl.obolibrary.org/obo/PATO_0000399", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7745,26 +8228,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete olfactory value" + "lbl" : "obsolete life span value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040021", + "id" : "http://purl.obolibrary.org/obo/PATO_0000392", "meta" : { - "definition" : { - "val" : "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism..", - "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "unpaired" + "lbl" : "obsolete limited" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000805", + "id" : "http://purl.obolibrary.org/obo/PATO_0000391", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -7775,29 +8254,24 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete auditory value" + "lbl" : "obsolete intense" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040022", + "id" : "http://purl.obolibrary.org/obo/PATO_0000394", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape.", - "xrefs" : [ ] + "val" : "An intensity which is less than moderate in type or degree or effect or force.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/date", - "val" : "2018-11-19T21:49:07Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, "type" : "CLASS", - "lbl" : "flared" + "lbl" : "mild intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000808", + "id" : "http://purl.obolibrary.org/obo/PATO_0000393", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -7808,39 +8282,39 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete reflex value" + "lbl" : "obsolete maximal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000807", + "id" : "http://purl.obolibrary.org/obo/PATO_0000396", "meta" : { + "definition" : { + "val" : "An intensity which is extremely bad or unpleasant in type or degree or effect or force.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete proprioreception value" + "lbl" : "severe intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040025", + "id" : "http://purl.obolibrary.org/obo/PATO_0000395", "meta" : { "definition" : { - "val" : "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present.", - "xrefs" : [ "NCIT:C3824" ] + "val" : "An intensity which is less than extreme in type or degree or effect or force.", + "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "lesioned" + "lbl" : "moderate intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000809", + "id" : "http://purl.obolibrary.org/obo/PATO_0000398", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -7851,208 +8325,211 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete taste value" + "lbl" : "obsolete vigorous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040026", + "id" : "http://purl.obolibrary.org/obo/PATO_0000397", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being marked by interruptions or gaps.", - "xrefs" : [ ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "structurally interrupted", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term is intended for use for terms such as MP:0010461 discontinuous pulmonary artery and MP:0004157 interrupted aortic arch." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "http://orcid.org/0000-0001-5208-3432" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "structurally discontinuous" + "lbl" : "obsolete slight" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000800", + "id" : "http://purl.obolibrary.org/obo/IAO_0000424", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "definition" : { + "val" : "A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "ObjectProperty: RO_0002104\nLabel: has plasma membrane part\nAnnotations: IAO_0000424 \"http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.org/obo/owl/GO#GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)\"\n" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "expand expression to" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "obsolete muscle strength value" + "type" : "PROPERTY", + "lbl" : "expand expression to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000802", + "id" : "http://purl.obolibrary.org/obo/IAO_0000423", "meta" : { + "definition" : { + "val" : "Terms with this status should eventually replaced with a term from another ontology.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "group:OBI" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Alan Ruttenberg" } ] }, - "type" : "CLASS", - "lbl" : "obsolete sensory function value" + "type" : "INDIVIDUAL", + "lbl" : "to be replaced with external ontology term" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000801", + "id" : "http://purl.obolibrary.org/obo/IAO_0000420", "meta" : { + "definition" : { + "val" : "A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "\"definitions\", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal." }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Alan Ruttenberg" } ] }, - "type" : "CLASS", - "lbl" : "obsolete motor function value" + "type" : "INDIVIDUAL", + "lbl" : "defined class" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016740", + "id" : "http://purl.obolibrary.org/obo/IAO_0000421", "meta" : { "definition" : { - "val" : "Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.", - "xrefs" : [ "ISBN:0198506732" ] + "val" : "A named class expression is a logical expression that is given a name. The name can be used in place of the expression.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], - "xrefs" : [ { - "val" : "Reactome:R-HSA-5668414" - }, { - "val" : "Reactome:R-HSA-8868783" - }, { - "val" : "Reactome:R-HSA-1483089" - }, { - "val" : "Reactome:R-HSA-6787403" - }, { - "val" : "Reactome:R-HSA-1483186" - }, { - "val" : "EC:2" - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "molecular_function" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions" } ] }, - "type" : "CLASS", - "lbl" : "transferase activity" + "type" : "INDIVIDUAL", + "lbl" : "named class expression" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040020", + "id" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "type" : "PROPERTY", + "lbl" : "has_alternative_id" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000390", "meta" : { - "definition" : { - "val" : "Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal.", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.org/dc/elements/1.1/date", - "val" : "2018-11-16T22:52:49Z" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "spayed female" + "lbl" : "obsolete extreme" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000815", + "id" : "http://purl.obolibrary.org/obo/PATO_0000323", "meta" : { + "definition" : { + "val" : "An achromatic color of maximum brightness; the color of objects that reflect nearly all light of all visible wavelengths.", + "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "whitish", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute odor acuity value" + "lbl" : "white" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000814", + "id" : "http://purl.obolibrary.org/obo/PATO_0001655", "meta" : { + "definition" : { + "val" : "A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per liter of solution.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Osmolarity" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete taste acuity value" + "lbl" : "osmolarity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000817", + "id" : "http://purl.obolibrary.org/obo/PATO_0000322", "meta" : { + "definition" : { + "val" : "A color hue with high wavelength of the long-wave end of the visible spectrum, evoked in the human observer by radiant energy with wavelengths of approximately 630 to 750 nanometers.", + "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete anosmia" + "lbl" : "red" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000816", + "id" : "http://purl.obolibrary.org/obo/PATO_0001656", "meta" : { + "definition" : { + "val" : "A osmolarity which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low osmolarity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001657" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative odor acuity value" + "lbl" : "decreased osmolarity" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0005622", + "id" : "http://purl.obolibrary.org/obo/PATO_0001653", "meta" : { "definition" : { - "val" : "The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. 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Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.", - "xrefs" : [ "GOC:go_curators" ] + "val" : "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning with respect to an additional entity.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], - "xrefs" : [ { - "val" : "NIF_Subcellular:sao1813327414" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "misaligned", + "xrefs" : [ ] }, { - "val" : "Wikipedia:Cell_(biology)" + "pred" : "hasExactSynonym", + "val" : "unaligned with", + "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - 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"val" : "A positional quality inhering in a bearer by virtue of some aspect of that bearer beginning from a position on another entity.", - "xrefs" : [ ] + "val" : "A rotatiotion quality inhering in a bearer by virtue of being rotated towards the back or upper surface of an organism.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" - }, { - "pred" : "http://purl.org/dc/elements/1.1/date", - "val" : "2018-05-24T04:10:53Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "originates from" + "lbl" : "dorsally rotated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000825", + "id" : "http://purl.obolibrary.org/obo/PATO_0001651", "meta" : { + "definition" : { + "val" : "A resistance to a stimulus which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "decreased resistance", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "low resistance to", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001650" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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"pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "For example, distinct anteroposterior mobility of palatine relative to mesethmoid." + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000336" } ] }, - "type" : "CLASS", - "lbl" : "mobile relative to" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000839", + "id" : "http://purl.obolibrary.org/obo/PATO_0001661", "meta" : { + "definition" : { + "val" : "An action potential which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high action potential", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -8614,173 +9189,135 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative auditory ability value" + "lbl" : "obsolete increased action potential" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000838", + "id" : "http://purl.obolibrary.org/obo/PATO_0000331", "meta" : { + "definition" : { + "val" : "A color quality inhering in a bearer by virtue of the bearer's being altered or spoiled in color.", + "xrefs" : [ "Dictionary.com:Dictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000336" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute auditory ability value" + "lbl" : "discolored" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040011", + "id" : "http://purl.obolibrary.org/obo/PATO_0000345", "meta" : { "definition" : { - "val" : "Immobility relative to a second entity.", - "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] + "val" : "A compatibility quality inhering in a bearer by virtue of the bearer's being incapable of harmonious coexistence.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/date", - "val" : "2018-11-12T18:21:07Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000344" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "For example: distinct anteroposterior immobility of palatine relative to mesethmoid." } ] }, "type" : "CLASS", - "lbl" : "immobile relative to" + "lbl" : "incompatible" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040016", + "id" : "http://purl.obolibrary.org/obo/PATO_0001677", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides.", - "xrefs" : [ "https://orcid.org/0000-0003-3162-7490", "https://www.merriam-webster.com/dictionary/pentagonal" ] + "val" : "An efficiency quality inhering in a bearer by virtue of the bearer's lacking efficiency.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - 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"pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001677" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.org/dc/elements/1.1/date", - "val" : "2018-11-12T19:01:51Z" } ] }, "type" : "CLASS", - "lbl" : "dysplastic growth" + "lbl" : "efficient" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040014", + "id" : "http://purl.obolibrary.org/obo/PATO_0000344", "meta" : { "definition" : { - "val" : "A shape that is in the form of a narrow strip encircling an object.", - "xrefs" : [ "https://orcid.org/0000-0003-3162-7490", "https://www.merriam-webster.com/dictionary/band" ] + "val" : "A compatibility quality inhering in a bearer by virtue of the bearer's being capable of harmonious coexistence.", + "xrefs" : [ "PATOC:GVG" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - 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"val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling that of a trough, being narrow, long, and boxlike in shape.", - "xrefs" : [ "http://www.dictionary.com/browse/trough", "https://orcid.org/0000-0003-3162-7490" ] + "val" : "An efficiency which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "trough-shaped", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "trough-like", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "trough like", + "val" : "low efficiency", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" - }, { - "pred" : "http://purl.org/dc/elements/1.1/date", - "val" : "2018-11-12T18:35:51Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001676" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "trough shaped" + "lbl" : "decreased efficiency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000831", + "id" : "http://purl.obolibrary.org/obo/PATO_0000347", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute visual acuity value" + "lbl" : "obsolete sporophyte incompatible value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000830", + "id" : "http://purl.obolibrary.org/obo/PATO_0000346", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -8791,580 +9328,570 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative visual ability value" + "lbl" : "obsolete sporophyte compatible value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0040019", + "id" : "http://purl.obolibrary.org/obo/PATO_0001676", "meta" : { "definition" : { - "val" : "Fibrosis is the formation of excess fibrous connective tissue in an organ or tissue in a reparative or reactive process.", - "xrefs" : [ "https://en.wikipedia.org/wiki/Fibrosis" ] + "val" : "An efficiency which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high efficiency", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.org/dc/elements/1.1/date", - "val" : "2018-11-12T23:16:17Z" - }, { - "pred" : "http://purl.org/dc/elements/1.1/creator", - "val" : "http://orcid.org/0000-0001-5208-3432" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001675" } ] }, "type" : "CLASS", - "lbl" : "fibrotic" + "lbl" : "increased efficiency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000833", + "id" : "http://purl.obolibrary.org/obo/PATO_0000349", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute visual threshold value" + "lbl" : "obsolete carbohydrate composition value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000832", + "id" : "http://purl.obolibrary.org/obo/PATO_0000348", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative visual acuity value" + "lbl" : "obsolete composition value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000835", + "id" : "http://purl.obolibrary.org/obo/PATO_0001679", "meta" : { + "definition" : { + "val" : "A volume quality inhering in a mass of substance by virtue of the amount of 3-dimensional space it occupies.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Specific_volume" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "The reciprocal of density." } ] }, "type" : "CLASS", - "lbl" : "obsolete auditory acuity value" + "lbl" : "specific volume" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000834", + "id" : "http://purl.obolibrary.org/obo/PATO_0001670", "meta" : { + "definition" : { + "val" : "A susceptibility toward an external stimulus which is lower than normal/average.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "decreased susceptibility", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "low susceptibility toward", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001669" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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"subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "magnetism" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000354", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015010" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased humidity" + "lbl" : "obsolete protein composition value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015016", + "id" : "http://purl.obolibrary.org/obo/PATO_0000353", "meta" : { - "definition" : { - "val" : "Having a shape or form that resembles a step of a stairway (e.g., a ledge or offset margin).", - "xrefs" : [ "http://www.thefreedictionary.com/stepped", "https://github.com/pato-ontology/pato/issues/82" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "stepped" + "lbl" : "obsolete secondary product composition value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015017", + "id" : "http://purl.obolibrary.org/obo/PATO_0001683", "meta" : { "definition" : { - "val" : "A physical quality inhering in an entity by virtue of a portion of the bearer's molecular or polymolecular constituents present in one phase being dispersed in a portion of the bearer's constituents present in another phase.", - "xrefs" : [ "ENVO:pb", "https://github.com/pato-ontology/pato/issues/91", "https://goldbook.iupac.org/html/C/C01172.html" ] + "val" : "A magnetism which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high magnetism", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001684" } ] }, "type" : "CLASS", - "lbl" : "quality of a colloid" + "lbl" : "increased magnetism" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015014", + "id" : "http://purl.obolibrary.org/obo/PATO_0001619", "meta" : { "definition" : { - "val" : "An increase in illumination.", - "xrefs" : [ "https://github.com/pato-ontology/pato/issues/89" ] + "val" : "A tonicity which is relatively low.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "illuminated", + "pred" : "hasExactSynonym", + "val" : "low tonicity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -9372,407 +9899,464 @@ "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015015" + "val" : "http://purl.obolibrary.org/obo/PATO_0001618" } ] }, "type" : "CLASS", - "lbl" : "increased degree of illumination" + "lbl" : "decreased tonicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015015", + "id" : "http://purl.obolibrary.org/obo/PATO_0001617", "meta" : { "definition" : { - "val" : "An decrease in illumination.", - "xrefs" : [ "https://github.com/pato-ontology/pato/issues/89" ] + "val" : "A morphological quality inhering in a bearer by virtue of the bearer's being distorted in form.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "disfigured", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "distorted", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015014" } ] }, "type" : "CLASS", - "lbl" : "decreased degree of illumination" + "lbl" : "deformed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002197", + "id" : "http://purl.obolibrary.org/obo/PATO_0001618", "meta" : { "definition" : { - "val" : "A quality that describes the power of an atom to attract electrons to itself .", - "xrefs" : [ "PATOC:JH" ] + "val" : "A tonicity which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high tonicity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-10T03:31:15Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001619" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "electronegativity" + "lbl" : "increased tonicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002198", + "id" : "http://purl.obolibrary.org/obo/PATO_0001611", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of its constitution.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits color variation or change.", + "xrefs" : [ "PATO:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-15T04:35:27Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "quality of a substance" + "lbl" : "variability of color" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002195", + "id" : "http://purl.obolibrary.org/obo/PATO_0001612", "meta" : { "definition" : { - "val" : "A quality which inheres in a molecular entity by virtue of the molecular entity possessing more protons overall than electrons, thus having an overall positive charge.", - "xrefs" : [ "PATOC:JH" ] + "val" : "A variability of color which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high variability of color", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-10T03:30:06Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002196" + "val" : "http://purl.obolibrary.org/obo/PATO_0001613" } ] }, "type" : "CLASS", - "lbl" : "positive charge" + "lbl" : "increased variability of color" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002196", + "id" : "http://purl.obolibrary.org/obo/PATO_0001610", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000967" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001615", "meta" : { "definition" : { - 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"id" : "http://purl.obolibrary.org/obo/PATO_0002199", + "id" : "http://purl.obolibrary.org/obo/PATO_0001616", "meta" : { - "definition" : { - "val" : "A quality which inheres in a substance by virtue of the ease with which the substance can be changed from a solid to a liquid state especially by the application of heat.", - "xrefs" : [ "PATOC:JH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000700" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-15T04:36:57Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "meltability" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002190", + "id" : "http://purl.obolibrary.org/obo/PATO_0001613", "meta" : { "definition" : { - "val" : "A molecular quality that inheres in a molecular entity by virtue of the presence of a conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone.", - "xrefs" : [ "PATOC:JH" ] + "val" : "A variability of color which is relatively low.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low variability of color", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001612" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-10T03:25:27Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "aromaticity" + "lbl" : "decreased variability of color" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015018", + "id" : "http://purl.obolibrary.org/obo/PATO_0001614", "meta" : { "definition" : { - "val" : "A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being suspended in a gas.", - "xrefs" : [ "ENVO:pb", "https://github.com/pato-ontology/pato/issues/91" ] + "val" : "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001615" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"id" : "http://purl.obolibrary.org/obo/PATO_0002193", + "id" : "http://purl.obolibrary.org/obo/PATO_0001629", "meta" : { "definition" : { - "val" : "A molecular quality that inheres in a molecular entity by virtue of the overall electric charge of the molecule, which is due to a comparison between the total number of electrons and the total number of protons.", - "xrefs" : [ "PATOC:JH" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "clumped", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "clustered", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-10T03:28:54Z" } ] }, "type" : "CLASS", - "lbl" : "electric charge" + "lbl" : "aggregated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002194", + "id" : "http://purl.obolibrary.org/obo/PATO_0001622", "meta" : { "definition" : { - "val" : "A quality which inheres in a molecular entity by virtue of the molecular entity possessing the same amount of electrons overall as protons, thus having an overall neutral charge.", - "xrefs" : [ "PATOC:JH" ] + "val" : "A turgor which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high turgor", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-10T03:29:37Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001621" } ] }, "type" : "CLASS", - "lbl" : "neutral charge" + "lbl" : "increased turgor" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002191", + "id" : "http://purl.obolibrary.org/obo/PATO_0001623", "meta" : { "definition" : { - "val" : "A molecular quality that inheres in a molecular entity when it possesses at least one ring that is aromatic, i.e. A conjugated ring of unsaturated bonds, lone pairs, or empty orbitals that exhibit a stabilization stronger than would be expected by the stabilization of conjugation alone.", - "xrefs" : [ "PATOC:JH" ] + "val" : "A size quality inhering in a bearer by virtue of a part or parts of the bearer's being decreased in size due to reduction in tissue mass through wasting.", + "xrefs" : [ "Wiikipedia:Wasting", "Wikipedia:Atrophy" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "atrophic", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002192" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-10T03:25:59Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "aromatic" + "lbl" : "atrophied" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002192", + "id" : "http://purl.obolibrary.org/obo/PATO_0001620", "meta" : { "definition" : { - "val" : "A quality that inheres in a molecular entity by virtue of the molecule possessing no rings that are aromatic.", - "xrefs" : [ "PATOC:JH" ] + "val" : "A structural quality inhering in a cell or blood vessel or capillary by virtue of the bearer's being in a rigid state of fullness resulting from pressure of the contents against the wall or membrane.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-03-10T03:26:41Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002191" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "non-aromatic" + "lbl" : "turgor" }, { - "id" : "http://purl.obolibrary.org/obo/pato#scalar_slim", + "id" : "http://purl.obolibrary.org/obo/PATO_0001621", "meta" : { + "definition" : { + "val" : "A turgor which is relatively low.", + "xrefs" : [ "PATO:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low turgor", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Scalar slim" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001622" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY" + "type" : "CLASS", + "lbl" : "decreased turgor" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015030", + "id" : "http://purl.obolibrary.org/obo/PATO_0001626", "meta" : { "definition" : { - "val" : "A shape that ineres in a bearer by virtue of the bearer's mass being distributed in a feather-like fashion.", - "xrefs" : [ "https://github.com/pato-ontology/pato/issues/122" ] + "val" : "A structural quality inhering in a bearer by virtue of whether the bearer has enough functionality.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "plumed", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "feather-shaped", + "pred" : "hasRelatedSynonym", + "val" : "adequacy", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term and children should probably be obsoleted." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "plume-shaped" + "lbl" : "sufficiency" }, { - "id" : "http://purl.obolibrary.org/obo/pato#has_dividend_entity", + "id" : "http://purl.obolibrary.org/obo/PATO_0001627", "meta" : { + "definition" : { + "val" : "A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality.", + "xrefs" : [ "PATO:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "adequate", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001628" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "has_dividend_entity" + "type" : "CLASS", + "lbl" : "sufficient" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0051100", + "id" : "http://purl.obolibrary.org/obo/PATO_0001624", "meta" : { "definition" : { - "val" : "Any process that stops or reduces the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.", - "xrefs" : [ "GOC:ai" ] + "val" : "A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s).", + "xrefs" : [ "PATO:MAH" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "dysfunction", + "xrefs" : [ ] + }, { + "pred" : "hasBroadSynonym", + "val" : "dysfunctional", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "impaired", + "xrefs" : [ ] + }, { "pred" : "hasExactSynonym", - "val" : "down regulation of binding", + "val" : "having decreased function", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "downregulation of binding", + "val" : "low functionality", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "down-regulation of binding", + "val" : "lacks function of type", "xrefs" : [ ] }, { - "pred" : "hasNarrowSynonym", - "val" : "inhibition of binding", + "pred" : "hasExactSynonym", + "val" : "partial functionality", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001642" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001641" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001625" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001568" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001556" } ] }, "type" : "CLASS", - "lbl" : "negative regulation of binding" + "lbl" : "decreased functionality" }, { - "id" : "http://purl.obolibrary.org/obo/pato#inversely_associated_with", + "id" : "http://purl.obolibrary.org/obo/PATO_0001625", "meta" : { "definition" : { - "val" : "q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear.", - "xrefs" : [ "PATOC:cjm", "Wikipedia:Association_(statistics)" ] + "val" : "A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s).", + "xrefs" : [ "PATO:MAH" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high functionality", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Association is weaker than correlation or proportionality. These relations may be later added to PATO." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-08-26T02:50:24Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001624" } ] }, - "type" : "PROPERTY", - "lbl" : "inversely_associated_with" + "type" : "CLASS", + "lbl" : "increased functionality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002148", + "id" : "http://purl.obolibrary.org/obo/PATO_0000309", "meta" : { "definition" : { - "val" : "A virulence that is relatively high.", + "val" : "An age which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002147" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-30T05:13:10Z" + "val" : "http://purl.obolibrary.org/obo/PATO_0000308" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased virulence" + "lbl" : "young" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002149", + "id" : "http://purl.obolibrary.org/obo/PATO_0000308", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer exhibiting increased density resulting in exhibiting increased degree of radiopacity (in X-rays).", + "val" : "An age which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], @@ -9780,336 +10364,340 @@ "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-11-03T02:59:08Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000309" } ] }, "type" : "CLASS", - "lbl" : "ivory" + "lbl" : "old" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001295", + "id" : "http://purl.obolibrary.org/obo/PATO_0001639", "meta" : { "definition" : { - "val" : "A reflective quality restricted to a particular wavelength.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Typically used for light, but also applied to full EM spectrum." - } ] - }, - "type" : "CLASS", - "lbl" : "albedo" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002142", - "meta" : { "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-28T03:14:54Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001638" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "bracket" + "lbl" : "unnecessary (occurrent)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001296", + "id" : "http://purl.obolibrary.org/obo/PATO_0001633", "meta" : { "definition" : { - "val" : "A scalar optical quality which obtains by the magnitude of the light emitted by the bearer.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear of an organism relative to another entity.", + "xrefs" : [ "PATOC:nw" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "superior (human head)", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "posterior (human torso)", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "luminous flux" + "lbl" : "posterior to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002143", + "id" : "http://purl.obolibrary.org/obo/PATO_0000301", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-30T02:18:39Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "sloped downward" + "lbl" : "obsolete absolute speed value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002140", + "id" : "http://purl.obolibrary.org/obo/PATO_0001634", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as food.", - "xrefs" : [ "PATOC:VO" ] + "val" : "A quality of a single physical entity inhering in a bearer by virtue of whether the bearer is essential or indispensable.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002139" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-26T01:22:27Z" } ] }, "type" : "CLASS", - "lbl" : "inedible" + "lbl" : "necessity (continuant)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001293", + "id" : "http://purl.obolibrary.org/obo/PATO_0000300", "meta" : { "definition" : { - "val" : "A scalar EM radiation quality which obtains by the capacity of the bearer to retain radiation.", + "val" : "A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "fixed", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000299" } ] }, "type" : "CLASS", - "lbl" : "absorption quality" + "lbl" : "immobile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002141", + "id" : "http://purl.obolibrary.org/obo/PATO_0001631", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000140" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000303", "meta" : { "definition" : { - "val" : "A density quality which lacks pattern.", + "val" : "A speed which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high speed", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "fast speed", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - 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}, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "electromagnetic (EM) radiation quality" + "lbl" : "obsolete absolute age value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001292", + "id" : "http://purl.obolibrary.org/obo/PATO_0001630", "meta" : { "definition" : { - "val" : "An EM radiation quality that is independent of the EM wavelength range.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"id" : "http://purl.obolibrary.org/obo/PATO_0002156", + "id" : "http://purl.obolibrary.org/obo/PATO_0001643", "meta" : { "definition" : { - "val" : "A rotation quality inhering in a bearer by virtue of being rotated towards the side of an organism.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "externally rotated", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-11-06T02:25:10Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "laterally rotated" + "lbl" : "stubby" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002150", + "id" : "http://purl.obolibrary.org/obo/PATO_0000316", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved outwards from the part of the body from which the tail arises.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "splayed inferior (human torso)", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "splayed posterior", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-11-06T01:13:10Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "splayed caudal" + "lbl" : "obsolete relative color value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015001", + "id" : "http://purl.obolibrary.org/obo/PATO_0001648", "meta" : { "definition" : { - "val" : "Absence due to a degenerative process.", - "xrefs" : [ "PATOC:PortlandMeetingFeb2015" ] + "val" : "An 1-D extent quality which is equal to the length of the closed curve of a circle.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#absent_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "circumference" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000315", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "absence due to degeneration" + "lbl" : "obsolete color pattern value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015002", + "id" : "http://purl.obolibrary.org/obo/PATO_0001649", "meta" : { "definition" : { - "val" : "The ability of a process to produce its output.", - "xrefs" : [ "PATOC:PortlandMeetingFeb2015" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the side.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" } ] }, "type" : "CLASS", - "lbl" : "process efficacy" + "lbl" : "curved lateral" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015005", + "id" : "http://purl.obolibrary.org/obo/PATO_0001646", "meta" : { "definition" : { - "val" : "Slender and spirally coiled.", - "xrefs" : [ "https://en.wiktionary.org/wiki/tendril" ] + "val" : "A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary and outwards in relation to the physical space occupied by another entity.", + "xrefs" : [ "PATOC:nc" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "tendril-like", + "pred" : "hasExactSynonym", + "val" : "extruding from", "xrefs" : [ ] }, { "pred" : "hasRelatedSynonym", - "val" : "tendril-shaped", + "val" : "exits through", "xrefs" : [ ] }, { - "pred" : "hasBroadSynonym", - "val" : "tendrilled", + "pred" : "hasRelatedSynonym", + "val" : "exposed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -10438,519 +10902,533 @@ } ] }, "type" : "CLASS", - "lbl" : "tendrilous" + "lbl" : "protruding out of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015006", + "id" : "http://purl.obolibrary.org/obo/PATO_0000318", "meta" : { "definition" : { - "val" : "A quality inhering in a structure by virtue of it consisting of many of repeated, similar or identical subunits, arranged in some orderly array.", - "xrefs" : [ "GOC:DOS", "https://github.com/pato-ontology/pato/issues/78" ] + "val" : "A color hue with low wavelength of that portion of the visible spectrum lying between green and indigo, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 490 nanometers.", + "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "A complete coverage of this domain would subclasses homopolymeric, copolymeric, crystalline." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "polymeric" + "lbl" : "blue" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015003", + "id" : "http://purl.obolibrary.org/obo/PATO_0001647", "meta" : { - "definition" : { - "val" : "A decrease in the ability of a process to produce its output.", - "xrefs" : [ "PATOC:PortlandMeetingFeb2015" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015004" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000052" } ] }, - "type" : "CLASS", - "lbl" : "decreased efficacy" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015004", + "id" : "http://purl.obolibrary.org/obo/PATO_0000317", "meta" : { "definition" : { - "val" : "A increase in the ability of a process to produce its output.", - "xrefs" : [ "PATOC:PortlandMeetingFeb2015" ] + "val" : "A color that lacks any hues as parts.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "black" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001640", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0015003" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001511" } ] }, - "type" : "CLASS", - "lbl" : "increased efficacy" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002164", + "id" : "http://purl.obolibrary.org/obo/PATO_0001641", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the middle.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-12-02T10:06:21Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001624" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "curved medial" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002165", + "id" : "http://purl.obolibrary.org/obo/PATO_0000310", "meta" : { - "definition" : { - "val" : "To bent or hang downwards.", - "xrefs" : [ "thefreedictionary.:thefreedictionary." ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "sagging", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-12-02T03:32:55Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "drooping" + "lbl" : "obsolete color value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002162", + "id" : "http://purl.obolibrary.org/obo/IAO_0000428", "meta" : { "definition" : { - "val" : "A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch of an increased apical height.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Alan Ruttenberg" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "group:OBI" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-11-26T02:34:06Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "INDIVIDUAL", + "lbl" : "requires discussion" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_32525", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "Theria", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "high-arched" + "lbl" : "Theria " }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002163", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_32524", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "amniotes", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Amniota" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_32523", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "tetrapods", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Tetrapoda" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001608", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it into the surface or boundary of another entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being marked by, consisting of, or diversified with patches.", + "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-11-26T04:50:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "herniated into" + "lbl" : "patchy" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002168", + "id" : "http://purl.obolibrary.org/obo/PATO_0001609", "meta" : { "definition" : { - "val" : "An angular placement quality inhering in a bearer by virtue of the bearer being changed in position in relation to another entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being scattered; spread irregularly, and at a distance from each other.", + "xrefs" : [ "biology.lsu:biology.lsu" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "mislocalised to", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-01-14T04:45:18Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "displaced to" + "lbl" : "sparse" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002169", + "id" : "http://purl.obolibrary.org/obo/PATO_0001606", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being split along the median axis.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A coating which is oily and slippery.", + "xrefs" : [ ".answers.com:.answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-03T04:37:15Z" } ] }, "type" : "CLASS", - "lbl" : "split medially" + "lbl" : "greasy" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002166", + "id" : "http://purl.obolibrary.org/obo/PATO_0001607", "meta" : { "definition" : { - "val" : "A duration quality of a process inhering in a bearer by virtue of the bearer's premature completion of the closure of the opening of an anatomical entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A tangled quality inhering in a bearer by virtue of the bearer's being not possible to unravel.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-12-02T04:10:10Z" } ] }, "type" : "CLASS", - "lbl" : "premature closure" + "lbl" : "matted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002167", + "id" : "http://purl.obolibrary.org/obo/PATO_0001600", "meta" : { "definition" : { - "val" : "A protruding quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded out of the surface or boundary of another entity.", + "val" : "A rotation quality inhering in a bearer by virtue of being rotated towards the rear of organism.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-12-02T05:19:32Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "herniated out of" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", - "type" : "PROPERTY", - "lbl" : "has_obo_format_version" + "lbl" : "posteriorly rotated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015009", + "id" : "http://purl.obolibrary.org/obo/PATO_0001601", "meta" : { "definition" : { - "val" : "A quality inhering in air by virtue of the partial pressure exerted by the bearer's water vapour content.", - "xrefs" : [ "https://github.com/pato-ontology/pato/issues/90" ] + "val" : "A rotation quality inhering in a bearer by virtue of being rotated towards the front of an organism.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "humidity" + "lbl" : "anteriorly rotated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015007", + "id" : "http://purl.obolibrary.org/obo/PATO_0001604", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the degree to which the bearers stands out or projects beyond a surface or line.", - "xrefs" : [ "GOC:CJM" ] + "val" : "A life span which is relatively low.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low life span", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001603" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "prominence" + "lbl" : "decreased life span" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0015008", + "id" : "http://purl.obolibrary.org/obo/PATO_0001605", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the extent to which the bearer is capable of being stretched or swollen.", - "xrefs" : [ "GOC:CJM" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being in disarray; extremely disorderly.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "distensibility" + "lbl" : "disheveled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002160", + "id" : "http://purl.obolibrary.org/obo/PATO_0001602", "meta" : { + "definition" : { + "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally expanded or increased in size.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "expanded", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0002157" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "distended" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002161", + "id" : "http://purl.obolibrary.org/obo/PATO_0001603", "meta" : { "definition" : { - "val" : "Having two horns or horn-shaped branches.", - "xrefs" : [ "mondofacto:mondofacto" ] + "val" : "A life span which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high life span", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-11-11T02:37:52Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001604" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "bicornuate" + "lbl" : "increased life span" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0043085", + "id" : "http://purl.obolibrary.org/obo/CL_0000000", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", + "val" : "http://purl.obolibrary.org/obo/cl.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "cell" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_1900121", "meta" : { "definition" : { - "val" : "Any process that activates or increases the activity of an enzyme.", - "xrefs" : [ "GOC:ebc", "GOC:jl", "GOC:tb", "GOC:vw" ] + "val" : "Any process that stops, prevents or reduces the frequency, rate or extent of a protein or other molecule binding to a receptor.", + "xrefs" : [ "GOC:TermGenie", "GOC:signaling" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl" ], - "xrefs" : [ { - "val" : "MIPS_funcat:18.02.01.01" - } ], "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "activation of enzyme activity", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "up-regulation of enzyme activity", - "xrefs" : [ ] - }, { "pred" : "hasExactSynonym", - "val" : "positive regulation of enzyme activity", - "xrefs" : [ "GOC:tb" ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "upregulation of metalloenzyme activity", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "stimulation of enzyme activity", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "positive regulation of metalloenzyme activity", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "activation of metalloenzyme activity", - "xrefs" : [ ] + "val" : "down-regulation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] }, { - "pred" : "hasNarrowSynonym", - "val" : "stimulation of metalloenzyme activity", - "xrefs" : [ ] + "pred" : "hasRelatedSynonym", + "val" : "down regulation of receptor-associated protein activity", + "xrefs" : [ "GOC:TermGenie" ] }, { "pred" : "hasNarrowSynonym", - "val" : "up regulation of metalloenzyme activity", - "xrefs" : [ ] + "val" : "inhibition of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] }, { "pred" : "hasExactSynonym", - "val" : "upregulation of enzyme activity", - "xrefs" : [ ] + "val" : "downregulation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] }, { "pred" : "hasNarrowSynonym", - "val" : "up-regulation of metalloenzyme activity", - "xrefs" : [ ] + "val" : "inhibition of receptor ligand", + "xrefs" : [ "GOC:TermGenie" ] }, { "pred" : "hasExactSynonym", - "val" : "up regulation of enzyme activity", - "xrefs" : [ ] + "val" : "down regulation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0048554" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-02-22T11:40:57Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "bf" } ] }, "type" : "CLASS", - "lbl" : "positive regulation of catalytic activity" + "lbl" : "negative regulation of receptor binding" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004047", + "id" : "http://purl.obolibrary.org/obo/GO_1900120", "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of a protein or other molecule binding to a receptor.", + "xrefs" : [ "GOC:TermGenie", "GOC:signaling" ] + }, + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "regulation of receptor ligand", + "xrefs" : [ "GOC:TermGenie" ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-03-13T23:55:19Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "val" : "bf" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002418" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-02-22T11:40:53Z" } ] }, - "type" : "PROPERTY", - "lbl" : "causally upstream of or within, positive effect" + "type" : "CLASS", + "lbl" : "regulation of receptor binding" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0004046", + "id" : "http://purl.obolibrary.org/obo/GO_1900122", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002418" + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of a protein or other molecule binding to a receptor.", + "xrefs" : [ "GOC:TermGenie", "GOC:signaling" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "upregulation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-03-13T23:55:05Z" + "pred" : "hasExactSynonym", + "val" : "up regulation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of receptor binding", + "xrefs" : [ "GOC:TermGenie" ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "val" : "bf" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-02-22T11:41:00Z" } ] }, + "type" : "CLASS", + "lbl" : "positive regulation of receptor binding" + }, { + "id" : "http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym", "type" : "PROPERTY", - "lbl" : "causally upstream of or within, negative effect" + "lbl" : "has_related_synonym" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0043086", + "id" : "http://purl.obolibrary.org/obo/GO_0048018", "meta" : { "definition" : { - "val" : "Any process that stops or reduces the activity of an enzyme.", - "xrefs" : [ "GOC:ebc", "GOC:jl", "GOC:tb", "GOC:vw" ] + "val" : "The activity of a gene product that interacts with a receptor to effect a change in the activity of the receptor. Ligands may be produced by the same, or different, cell that expresses the receptor. Ligands may diffuse extracellularly from their point of origin to the receiving cell, or remain attached to an adjacent cell surface (e.g. Notch ligands).", + "xrefs" : [ "GOC:kv", "GOC:molecular_function_refactoring", "GOC:pdt" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "down-regulation of enzyme activity", - "xrefs" : [ ] + "pred" : "hasBroadSynonym", + "val" : "receptor agonist activity", + "xrefs" : [ "GOC:molecular_function_refactoring" ] }, { "pred" : "hasExactSynonym", - "val" : "negative regulation of enzyme activity", - "xrefs" : [ "GOC:tb" ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "downregulation of metalloenzyme activity", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "negative regulation of metalloenzyme activity", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "inhibition of enzyme activity", + "val" : "signaling molecule", "xrefs" : [ ] }, { "pred" : "hasNarrowSynonym", - "val" : "inhibition of metalloenzyme activity", + "val" : "vitamin D receptor activator activity", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "down-regulation of metalloenzyme activity", + "val" : "signaling receptor ligand activity", "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-13T04:51:59Z" }, { - "pred" : "hasNarrowSynonym", - "val" : "down regulation of metalloenzyme activity", - "xrefs" : [ ] + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Definition discussed in https://github.com/geneontology/go-ontology/issues/14220" }, { - "pred" : "hasExactSynonym", - "val" : "downregulation of enzyme activity", - "xrefs" : [ ] + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "midori" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0071884" + } ] + }, + "type" : "CLASS", + "lbl" : "receptor ligand activity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002065", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being arranged like rays or radii; radiating from a common center.", + "xrefs" : [ "PATOC:me" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "down regulation of enzyme activity", + "val" : "stellate", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0048553" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-07-01T01:48:19Z" } ] }, "type" : "CLASS", - "lbl" : "negative regulation of catalytic activity" + "lbl" : "star shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002175", + "id" : "http://purl.obolibrary.org/obo/PATO_0002066", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's changed direction of position towards another entity.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A solid configuration inhering in a material entity by virtue of its constituent atoms, molecules, or ions being arranged in an orderly repeating pattern extending in all three spatial dimensions.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Crystal" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-07-01T01:50:40Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-25T09:14:42Z" } ] }, "type" : "CLASS", - "lbl" : "deviation" + "lbl" : "crystal configuration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002176", + "id" : "http://purl.obolibrary.org/obo/PATO_0002063", "meta" : { "definition" : { - "val" : "A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the side.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape inhering in a bearer by virtue of the bearer's being elongated and cylindrical.", + "xrefs" : [ "PATOC:me" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -10959,22 +11437,22 @@ "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-25T09:16:04Z" + "val" : "2009-07-01T01:44:06Z" } ] }, "type" : "CLASS", - "lbl" : "deviation towards the lateral side" + "lbl" : "columnar" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002173", + "id" : "http://purl.obolibrary.org/obo/PATO_0002064", "meta" : { "definition" : { - "val" : "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning towards an additional entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A structure quality inhering in a bearer by virtue of the bearer's delimited by a surface with holes.", + "xrefs" : [ "PATOC:me" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-22T03:18:17Z" + "val" : "2009-07-01T01:46:53Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" @@ -10984,976 +11462,1205 @@ } ] }, "type" : "CLASS", - "lbl" : "misaligned towards" + "lbl" : "fenestrated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002174", + "id" : "http://purl.obolibrary.org/obo/PATO_0002069", "meta" : { "definition" : { - "val" : "An alignment quality inhering in a bearer by virtue of the bearer's being in a improper spatial positioning away from an additional entity.", + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's lacking a layered configuration.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002068" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-22T03:18:48Z" + "val" : "2009-07-01T02:33:41Z" } ] }, "type" : "CLASS", - "lbl" : "misaligned away from" + "lbl" : "unstratified" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002179", + "id" : "http://purl.obolibrary.org/obo/PATO_0002067", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards to point of attachment or origin.", + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's layered configuration.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-25T12:34:48Z" + "val" : "2009-07-01T02:30:45Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "mislocalised proximally" + "lbl" : "stratification" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002177", + "id" : "http://purl.obolibrary.org/obo/PATO_0002068", "meta" : { "definition" : { - "val" : "A deviation quality inhering in a bearer by virtue of the bearer's changed direction of position towards the middle.", + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's exhibiting a layered configuration.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-25T09:16:56Z" + "val" : "2009-07-01T02:31:53Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002069" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "deviation towards the medial side" + "lbl" : "stratified" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002178", + "id" : "http://purl.obolibrary.org/obo/PATO_0002061", "meta" : { - "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position around a central point or axis.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002062", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-25T11:24:58Z" + "val" : "2009-06-05T09:16:46Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "mislocalised radially" + "lbl" : "physical quality of a process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0060003", + "id" : "http://purl.obolibrary.org/obo/PATO_0002060", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being present in females and absent from males in members of the same species.", - "xrefs" : [ "http://orcid.org/0000-0002-1373-1705" ] + "val" : "The specific wavelength of radiation that can be retained by a bearer.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-05-27T02:33:32Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "http://orcid.org/0000-0002-1373-1705" + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2019-08-23T08:51:22Z" } ] }, "type" : "CLASS", - "lbl" : "female-specific" + "lbl" : "absorption wavelength" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0060001", + "id" : "http://purl.obolibrary.org/obo/PATO_0002076", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being present in one sex and absent from the other in members of the same species.", - "xrefs" : [ "http://orcid.org/0000-0002-1373-1705" ] + "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's movement.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "movement behavioural quality", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "http://orcid.org/0000-0002-1373-1705" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2019-08-23T08:46:30Z" + "val" : "2009-09-18T02:04:48Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sex-specific" + "lbl" : "movement behavioral quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0060002", + "id" : "http://purl.obolibrary.org/obo/PATO_0002077", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being present in males and absent from females in members of the same species.", - "xrefs" : [ "http://orcid.org/0000-0002-1373-1705" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being positioned with multiple entities of the same type above and below.", + "xrefs" : [ "PATOC:CJM" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "http://orcid.org/0000-0002-1373-1705" + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2019-08-23T08:49:59Z" + "val" : "2009-09-18T02:11:35Z" } ] }, "type" : "CLASS", - "lbl" : "male-specific" + "lbl" : "stacked" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002171", + "id" : "http://purl.obolibrary.org/obo/PATO_0002074", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being split on two side.", + "val" : "An avidity which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-03T04:37:53Z" + "val" : "2009-09-18T01:45:56Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002075" } ] }, "type" : "CLASS", - "lbl" : "split bilaterally" + "lbl" : "increased avidity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002172", + "id" : "http://purl.obolibrary.org/obo/PATO_0002075", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being split along the radial axis.", + "val" : "An avidity which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-03T04:42:35Z" + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002074" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-09-18T01:45:59Z" } ] }, "type" : "CLASS", - "lbl" : "split radially" + "lbl" : "decreased avidity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002170", + "id" : "http://purl.obolibrary.org/obo/PATO_0002078", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being split asymmetrically on one side.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's having an empty space or cavity within.", + "xrefs" : [ "url:http://www.merriam-webster.com/dictionary/hollow" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-02-03T04:37:40Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-09-18T02:19:20Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "split laterally" + "lbl" : "hollow" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001259", + "id" : "http://purl.obolibrary.org/obo/PATO_0002079", "meta" : { - "definition" : { - "val" : "A color consisting of purple color and low brightness.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "dark purple" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002106", + "id" : "http://purl.obolibrary.org/obo/PATO_0002072", "meta" : { "definition" : { - "val" : "A cellular quality inhering in a bearer by virtue of its lacking most of the cellular characteristics which would allow it to be fully differentiated.", + "val" : "An affinity which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - 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"pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002263" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of,_negative_effect" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2018-01-26T23:53:22Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "cjm" + "val" : "2009-09-18T01:41:44Z" } ] }, - "type" : "PROPERTY", - "lbl" : "acts upstream of, negative effect" + "type" : "CLASS", + "lbl" : "avidity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002107", + "id" : "http://purl.obolibrary.org/obo/PATO_0002070", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being at the edge or boundary of a related entity.", + "val" : "A molecular quality that arises from the molecular attraction exerted between two atoms or compounds.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T02:58:16Z" + "val" : "2009-09-18T01:16:16Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "peripheral" + "lbl" : "affinity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001257", + "id" : "http://purl.obolibrary.org/obo/PATO_0002071", "meta" : { "definition" : { - 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"lbl" : "light red" + "lbl" : "conical" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002110", + "id" : "http://purl.obolibrary.org/obo/PATO_0002022", "meta" : { "definition" : { - "val" : "A cellular quality inhering in a bearer by virtue of its having most of the cellular characteristics of the tissue of origin.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a minute projection (villus).", + "xrefs" : [ "PATOC:PEM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T03:26:29Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "well differentiated" + "lbl" : "villiform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001263", + "id" : "http://purl.obolibrary.org/obo/PATO_0002020", "meta" : { "definition" : { - "val" : "A color consisting of yellow hue and low brightness.", + "val" : "Pink color having high brightness and low saturation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dark yellow" + "lbl" : "pale pink" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001260", + "id" : "http://purl.obolibrary.org/obo/PATO_0002025", "meta" : { "definition" : { - "val" : "A color consisting of purple color and high brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A convex angle that is formed by one side of a polygon and a line extended from an adjacent side.", + "xrefs" : [ "http://en.wikipedia.org/wiki/Internal_angle" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "light purple" + "lbl" : "external angle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001261", + "id" : "http://purl.obolibrary.org/obo/PATO_0002026", "meta" : { "definition" : { - "val" : "A color consisting of red hue and low brightness.", + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2008-12-18T12:49:19Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001818" } ] }, "type" : "CLASS", - "lbl" : "dark red" + "lbl" : "non-progressive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002113", + "id" : "http://purl.obolibrary.org/obo/PATO_0002023", "meta" : { "definition" : { - "val" : "Perforated like a sieve.", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an apical-basal axis.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T03:38:22Z" } ] }, "type" : "CLASS", - "lbl" : "cribriform" + "lbl" : "apical-basal polarity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001266", + "id" : "http://purl.obolibrary.org/obo/PATO_0002024", "meta" : { "definition" : { - "val" : "A color consisting of blue hue and low saturation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the anterior-posterior axis.", + "xrefs" : [ "PATOC:MAH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "pale blue", + "val" : "rostral-caudal polarity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "superior-caudal polarity (human torso)", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -11962,240 +12669,193 @@ } ] }, "type" : "CLASS", - "lbl" : "desaturated blue" + "lbl" : "anterior-posterior polarity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002114", + "id" : "http://purl.obolibrary.org/obo/PATO_0002038", "meta" : { "definition" : { - "val" : "A composition quality inhering in a bearer by virtue of the bearer's containing excess lipid.", + "val" : "A structural quality inhering in a bearer whose structure which does not deteriorate.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "not degenerate", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-02-03T11:14:54Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T03:47:15Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000639" } ] }, "type" : "CLASS", - "lbl" : "fatty" + "lbl" : "non-degenerate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001267", + "id" : "http://purl.obolibrary.org/obo/PATO_0002039", "meta" : { "definition" : { - "val" : "A color consisting of brown hue and high saturation.", + "val" : "A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "bright brown", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002040" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "saturated brown" + "lbl" : "biconcave" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001264", + "id" : "http://purl.obolibrary.org/obo/PATO_0002032", "meta" : { "definition" : { - "val" : "A color consisting of yellow hue and high brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A reflectivity quality inhering in light by virtue of the bearer's scattering occurring at small angle to the incident beam.", + "xrefs" : [ "PATOC:mc" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "blond", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-01-27T11:38:49Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "light yellow" + "lbl" : "forward scatter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002111", + "id" : "http://purl.obolibrary.org/obo/PATO_0002033", "meta" : { "definition" : { - "val" : "A cellular quality inhering in a bearer by virtue of its lacking few of the cellular characteristics which would allow it to be fully differentiated.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A reflective quality that is the light scattering occurring at wide angle (around 90 degrees) to the incident beam.", + "xrefs" : [ "PATOC:mc" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T03:29:42Z" + "val" : "2009-01-27T11:39:36Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - 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"val" : "2009-10-05T03:37:05Z" + "val" : "2009-01-27T11:13:52Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001821" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000649" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "perforate" + "lbl" : "specificity to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001265", + "id" : "http://purl.obolibrary.org/obo/PATO_0002031", "meta" : { "definition" : { - "val" : "A color consisting of blue hue and high saturation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved or tilted such that the tip points upwards.", + "xrefs" : [ "PATOC:cjm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "bright blue", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-01-27T11:23:45Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "saturated blue" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym", - "type" : "PROPERTY", - "lbl" : "has_broad_synonym" + "lbl" : "upturned" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016310", + "id" : "http://purl.obolibrary.org/obo/PATO_0002036", "meta" : { "definition" : { - "val" : "The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.", - "xrefs" : [ "ISBN:0198506732" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located towards the central axis of the organism or an extremity.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], - "xrefs" : [ { - "val" : "Wikipedia:Phosphorylation" - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" - } ] - }, - "type" : "CLASS", - "lbl" : "phosphorylation" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0005634", - "meta" : { - "definition" : { - "val" : "A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. 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"val" : "horsetail nucleus", - "xrefs" : [ "GOC:al", "GOC:mah", "GOC:vw", "PMID:15030757" ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/go.owl" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-02-01T02:06:20Z" } ] }, "type" : "CLASS", - "lbl" : "nucleus" - }, { - "id" : "http://purl.obolibrary.org/obo/pato#realized_by", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "PROPERTY", - "lbl" : "realized_by" + "lbl" : "axial to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002128", + "id" : "http://purl.obolibrary.org/obo/PATO_0002037", "meta" : { "definition" : { - "val" : "A quality inhering a bearer by virtue of the bearer's containing or resembling serum.", + "val" : "A structural quality inhering in a bearer by virtue of the bearer exhibiting deterioration of its structure.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-02-03T11:13:19Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T04:51:16Z" } ] }, "type" : "CLASS", - "lbl" : "serous" + "lbl" : "degeneration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002129", + "id" : "http://purl.obolibrary.org/obo/PATO_0002034", "meta" : { "definition" : { - "val" : "A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues.", + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being unseparated into parts or divisions.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "unseparated", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -12204,955 +12864,792 @@ "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T05:02:45Z" + "val" : "2009-01-27T11:53:46Z" } ] }, "type" : "CLASS", - "lbl" : "neoplastic, invasive" + "lbl" : "undivided" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002126", + "id" : "http://purl.obolibrary.org/obo/PATO_0002035", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's containing bone.", + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being on the same side in relation to another structure.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "bony", + "val" : "ipsilateral", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-02-01T02:04:11Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T04:42:11Z" } ] }, "type" : "CLASS", - "lbl" : "osseous" + "lbl" : "ipsilateral to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001279", + "id" : "http://purl.obolibrary.org/obo/pato#is_unit_of", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001280" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "pato.ontology" } ] }, - "type" : "CLASS" + "type" : "PROPERTY", + "lbl" : "is_unit_of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002127", + "id" : "http://purl.obolibrary.org/obo/PATO_0002049", "meta" : { "definition" : { - "val" : "A hardness quality of being rigid and resistant to pressure and fibrous.", + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved around an axis and towards the side.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-03-13T12:36:14Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "George Gkoutos" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T04:49:30Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "scirrhous" + "lbl" : "lateral and rotional curvature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002120", + "id" : "http://purl.obolibrary.org/obo/PATO_0002043", "meta" : { "definition" : { - "val" : "A quality inhering a bearer by virtue of the bearer's ability to generate pus.", + "val" : "An anterior-posterior diameter quality which is relatively large.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "purulent", + "pred" : "hasExactSynonym", + "val" : "high anterior-posterior diameter", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T03:56:00Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002042" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "suppurative" + "lbl" : "increased anterior-posterior diameter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001273", + "id" : "http://purl.obolibrary.org/obo/PATO_0002044", "meta" : { "definition" : { - "val" : "A color consisting of grey color and high saturation.", + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being a quadrilateral with two parallel sides.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "trapezoidal", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete bright grey" + "lbl" : "trapezoid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001274", + "id" : "http://purl.obolibrary.org/obo/PATO_0002041", "meta" : { "definition" : { - "val" : "A color consisting of grey color and low saturation.", + "val" : "A diameter that is along the anterior-posterior axis.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete pale grey" + "lbl" : "anterior-posterior diameter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002121", + "id" : "http://purl.obolibrary.org/obo/PATO_0002042", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's structureresembling an irregular meshwork with cross-linking struts.", + "val" : "An anterior-posterior diameter quality which is relatively small.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low anterior-posterior diameter", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T03:57:55Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002043" + } ] + }, + "type" : "CLASS", + "lbl" : "decreased anterior-posterior diameter" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002047", + "meta" : { + "definition" : { + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located on the side nearest to the axis of an organ or organism.", + "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/adaxial" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-03-03T04:22:28Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "george gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "trabecular" + "lbl" : "adaxial to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001271", + "id" : "http://purl.obolibrary.org/obo/PATO_0002048", "meta" : { "definition" : { - "val" : "A color consisting of green hue and high saturation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An organismal quality inhering in a bearer by virtue of the bearer's having two or more cell populations that differ in genetic makeup. This situation can affect any type of cell, including blood cells, gametes (egg and sperm cells), and skin.", + "xrefs" : [ "Medline:http://www.nlm.nih.gov/medlineplus" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "bright green", + "val" : "heterogeneity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-03-03T04:30:52Z" } ] }, "type" : "CLASS", - "lbl" : "saturated green" + "lbl" : "mosaicism" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001272", + "id" : "http://purl.obolibrary.org/obo/PATO_0002045", "meta" : { "definition" : { - "val" : "A color consisting of green hue and low saturation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A branched quality inhering in a bearer by virtue of the bearer's having smaller branches arising from larger branches. Resembling a tree in branching structure.", + "xrefs" : [ "PATOC:cvs" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "pale green", + "val" : "dendriform", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "dendroidal", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "dendroid", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-02-15T08:11:41Z" } ] }, "type" : "CLASS", - "lbl" : "desaturated green" + "lbl" : "dendritic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002124", + "id" : "http://purl.obolibrary.org/obo/PATO_0002046", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being away from or on the opposite side of the central axis.", + "xrefs" : [ "medical-dictionary:http://medical-dictionary.thefreedictionary.com/abaxial" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "george gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T04:37:14Z" + "val" : "2009-03-03T04:16:11Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "laminar" + "lbl" : "abaxial to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001277", + "id" : "http://purl.obolibrary.org/obo/PATO_0002040", "meta" : { "definition" : { - "val" : "A color consisting of orange hue and high saturation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface.", + "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/biconvexity" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "bright orange", - "xrefs" : [ ] + "xrefs" : [ { + "val" : "Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx" } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002039" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "saturated orange" + "lbl" : "biconvex" }, { - "id" : "http://purl.obolibrary.org/obo/pato#has_divisor_quality", + "id" : "http://purl.obolibrary.org/obo/PATO_0002054", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's being flattened along transverse axis.", + "xrefs" : [ "PATOC:msp" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "laterally flattened", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "transversely flattened", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-03-26T03:03:37Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, - "type" : "PROPERTY", - "lbl" : "has_divisor_quality" + "type" : "CLASS", + "lbl" : "laterally compressed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002125", + "id" : "http://purl.obolibrary.org/obo/PATO_0002055", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's consisting a knot-like mass.", + "val" : "A fragility which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002056" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - 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}, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-06T05:03:13Z" } ] }, "type" : "CLASS", - "lbl" : "neoplastic, deeply invasive" + "lbl" : "obsolete relative litter size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002135", + "id" : "http://purl.obolibrary.org/obo/PATO_0000287", "meta" : { - "definition" : { - "val" : "A duration quality of a process inhering in a bearer by virtue of the bearer's delay to complete the closure of the opening of an anatomical entity.", - "xrefs" : [ "PATOC:GVG" ] - }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-26T01:03:17Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "delayed closure" + "lbl" : "obsolete absolute litter size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001288", + "id" : "http://purl.obolibrary.org/obo/PATO_0000280", "meta" : { - "definition" : { - "val" : "A color consisting of red and brown hue and low brightness.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dark red brown" + "lbl" : "obsolete backcross fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002136", + "id" : "http://purl.obolibrary.org/obo/PATO_0000293", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's relative inability of electromagnetism to pass through a particular material, particularly X-rays.", - "xrefs" : [ "Wikipedia:Wikipedia" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-26T01:14:38Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "radiopacity" + "lbl" : "obsolete absolute activity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001289", + "id" : "http://purl.obolibrary.org/obo/PATO_0000292", "meta" : { - "definition" : { - "val" : "A color consisting of red and brown hue and high brightness.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "light red brown" + "lbl" : "obsolete mobility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001286", + "id" : "http://purl.obolibrary.org/obo/PATO_0000295", "meta" : { - "definition" : { - "val" : "A color consisting of yellow hue and low saturation.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "pale yellow", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "desaturated yellow" + "lbl" : "obsolete relative activity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002133", + "id" : "http://purl.obolibrary.org/obo/PATO_0000294", "meta" : { - "definition" : { - "val" : "A displaced angular placement quality inhering in a body part by virtue of the bearer's movement closer the medial plane of the body.", - "xrefs" : [ "wikipedia:wikipedia" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-13T06:41:39Z" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term is also used in reference to the operation of the muscle in anatomy or musculature." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "adduction" + "lbl" : "obsolete process value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002134", + "id" : "http://purl.obolibrary.org/obo/PATO_0000297", "meta" : { "definition" : { - "val" : "A composition quaity inhering in a bearer by virtue of the bearer's containing of or pertaining to fibrils, or nanoscale fibers.", - "xrefs" : [ "wikipedia:wikipedia" ] + "val" : "A quality of a process which ends earlier than the natural end time or reference process.", + "xrefs" : [ "PATOC:LC" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "fibrillate", + "val" : "abolished", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "incomplete", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-26T12:53:47Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: the definition is incorrect. See absent." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001508" } ] }, "type" : "CLASS", - "lbl" : "fibrillary" + "lbl" : "arrested" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001287", + "id" : "http://purl.obolibrary.org/obo/PATO_0000296", "meta" : { - "definition" : { - "val" : "A color consisting of red and brown hue.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "red brown" + "lbl" : "obsolete speed value" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016772", + "id" : "http://purl.obolibrary.org/obo/PATO_0000299", "meta" : { "definition" : { - "val" : "Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).", - "xrefs" : [ "GOC:jl", "ISBN:0198506732" ] + "val" : "A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl" ], - "xrefs" : [ { - "val" : "EC:2.7" - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides." + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000300" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "molecular_function" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "transferase activity, transferring phosphorus-containing groups" + "lbl" : "mobile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001280", + "id" : "http://purl.obolibrary.org/obo/PATO_0000298", "meta" : { - "definition" : { - "val" : "Pink color having medium brightness and low saturation.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "bright pink", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001279" } ] }, "type" : "CLASS", - "lbl" : "dark pale pink" + "lbl" : "obsolete not arrested value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001281", + "id" : "http://purl.obolibrary.org/obo/PATO_0000291", "meta" : { - "definition" : { - "val" : "A color consisting of purple color and high saturation.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "bright purple", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "saturated purple" + "lbl" : "obsolete relative respiratory rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001215", + "id" : "http://purl.obolibrary.org/obo/PATO_0000290", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -13163,633 +13660,798 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete time_unit" + "lbl" : "obsolete absolute respiratory rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001699", + "id" : "http://purl.obolibrary.org/obo/PATO_0002007", "meta" : { "definition" : { - "val" : "A sleep pattern which has regular start and/or end times.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "xrefs" : [ { + "val" : "Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png" + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001700" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Use this term or an is_a child of this term when the entire shape of the object is known." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002008" } ] }, "type" : "CLASS", - "lbl" : "regular sleep pattern" + "lbl" : "convex 3-D shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000367", + "id" : "http://purl.obolibrary.org/obo/PATO_0002008", "meta" : { "definition" : { - "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces west.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "xrefs" : [ { + "val" : "Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png" + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002007" } ] }, "type" : "CLASS", - "lbl" : "right" + "lbl" : "concave 3-D shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000366", + "id" : "http://purl.obolibrary.org/obo/PATO_0002005", "meta" : { "definition" : { - "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces east.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Surface shape that refers to the inward or outward curvature of the surface.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "left" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001216", - "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete volume_unit" + "lbl" : "concavity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001697", + "id" : "http://purl.obolibrary.org/obo/PATO_0002006", "meta" : { "definition" : { - "val" : "A photosensitivity which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low photosensitivity", + "pred" : "hasRelatedSynonym", + "val" : "2-D projection", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "cross-sectional", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001698" } ] }, "type" : "CLASS", - "lbl" : "decreased photosensitivity" + "lbl" : "2-D shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000369", + "id" : "http://purl.obolibrary.org/obo/PATO_0002009", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity.", + "xrefs" : [ "PATOC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete unidirectional" + "lbl" : "branchiness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001213", + "id" : "http://purl.obolibrary.org/obo/PATO_0002000", "meta" : { + "definition" : { + "val" : "A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity.", + "xrefs" : [ "PATOC:CJM" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "xrefs" : [ { + "val" : "OBO_REL:lacks_part" + } ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "lacks all physical parts of type", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Example: [E=organism Q=lacks_all_parts_of_type E2=Wing] - applies to an organism. A relational quality in which the bearer entity has no parts of the specified type. The bearer of this quality has_part = 0 of the indicated entity type, where a comparable organism usually has at least 1 part of the same type. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e lacks all parts of type X at time t, then there exists no instances x of X at t such that x part_of e that has no wings, where wings are normally present in that organism type. In OWL this is equivalent to a restriction on the OBO_REL:has_part relation with cardinality=0, i.e has_part 0 E2." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001557" } ] }, "type" : "CLASS", - "lbl" : "obsolete mass_unit" + "lbl" : "lacks all parts of type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001698", + "id" : "http://purl.obolibrary.org/obo/PATO_0002003", "meta" : { "definition" : { - "val" : "A photosensitivity which is relatively high.", + "val" : "A quality that inheres in an entire population or part of a population.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high photosensitivity", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001697" } ] }, "type" : "CLASS", - "lbl" : "increased photosensitivity" + "lbl" : "population quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001214", + "id" : "http://purl.obolibrary.org/obo/PATO_0002004", "meta" : { + "definition" : { + "val" : "A shape that inheres in a part of a surface. An object can have different surface shapes on different parts of its surface.", + "xrefs" : [ "PATOC:CJM" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Consider PATO:0001925" } ] }, "type" : "CLASS", - "lbl" : "obsolete temparature_unit" + "lbl" : "obsolete surface shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000368", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_1338369", + "type" : "CLASS", + "lbl" : "Dipnotetrapodomorpha" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002001", "meta" : { + "definition" : { + "val" : "The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly.", + "xrefs" : [ "PATOC:CJM" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "has fewer physical parts of type", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "decreased number of", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "has decreased number of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002002" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001569" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete towards1" + "lbl" : "has fewer parts of type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001219", + "id" : "http://purl.obolibrary.org/obo/PATO_0002002", "meta" : { + "definition" : { + "val" : "The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part.", + "xrefs" : [ "PATOC:CJM" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "increased number of", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "having extra physical parts", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "having supernumerary physical parts", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "has increased number of", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "has extra parts of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002001" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001560" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "In polydactyly, the bearer of the quality is the hand, and the entity type being counted is 'finger'. In EQ syntax, E=hand, Q= E2=finger." } ] }, "type" : "CLASS", - "lbl" : "obsolete area_unit" + "lbl" : "has extra parts of type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001217", + "id" : "http://purl.obolibrary.org/obo/go#goslim_pir", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "PIR GO slim" } ] }, - "type" : "CLASS", - "lbl" : "obsolete energy_unit" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001218", + "id" : "http://purl.obolibrary.org/obo/PATO_0002018", "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low magnitude", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002017" } ] }, "type" : "CLASS", - "lbl" : "obsolete substance_unit" + "lbl" : "decreased magnitude" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001691", + "id" : "http://purl.obolibrary.org/obo/PATO_0002019", "meta" : { "definition" : { - "val" : "A contractility quality inhering in a bearer by virtue of the bearer's inability of contracting or being contracted.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A growth quality of occurrent in which the growth of an organism, structure or group of organisms does not occur.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "agenesis", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This refers to the disposition of the bearer." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001690" } ] }, "type" : "CLASS", - "lbl" : "non-contractile" + "lbl" : "aplastic growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001692", + "id" : "http://purl.obolibrary.org/obo/PATO_0002016", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001472" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "magnitude" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0065009", + "id" : "http://purl.obolibrary.org/obo/PATO_0002017", "meta" : { - "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding.", - "xrefs" : [ "GOC:isa_complete" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_pir" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "regulation of a molecular function", + "val" : "high magnitude", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002018" } ] }, "type" : "CLASS", - "lbl" : "regulation of molecular function" + "lbl" : "increased magnitude" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000361", + "id" : "http://purl.obolibrary.org/obo/PATO_0002010", "meta" : { + "definition" : { + "val" : "A texture quality inhering in a bearer by virtue of the bearer's bing full of small openings or gaps.", + "xrefs" : [ "url:http://www.wordreference.com/definition/loose" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete gel consistency value" + "lbl" : "looseness" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0065007", + "id" : "http://purl.obolibrary.org/obo/PATO_0002011", "meta" : { "definition" : { - "val" : "Any process that modulates a measurable attribute of any biological process, quality or function.", - "xrefs" : [ "GOC:dph", "GOC:isa_complete", "GOC:mah", "GOC:pr", "GOC:vw" ] + "val" : "A structural quality which is held by a bearer when the latter's disposition the presence of abnormally proliferating masses of cells.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { - "pred" : "hasBroadSynonym", - "val" : "regulation", + "pred" : "hasExactSynonym", + "val" : "tumorous", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "biological regulation" + "lbl" : "neoplastic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001690", + "id" : "http://purl.obolibrary.org/obo/PATO_0002014", "meta" : { "definition" : { - "val" : "A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted.", + "val" : "A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This refers to the disposition of the bearer." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001691" } ] }, "type" : "CLASS", - "lbl" : "contractile" + "lbl" : "structure, cavities" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000360", + "id" : "http://purl.obolibrary.org/obo/PATO_0002015", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000025" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002012", + "meta" : { + "definition" : { + "val" : "A texture quality that exists through a liquid cover on the surface of the bearer.", + "xrefs" : [ "Wikipedia:Wikipedia" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete consistency value" + "lbl" : "coating" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001695", + "id" : "http://purl.obolibrary.org/obo/PATO_0002013", "meta" : { "definition" : { - "val" : "A fecundity which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A structural quality inhering in a bearer by virtue of whether the bearer forms a bundle of anatomical fibers, as of muscle or nerve.", + "xrefs" : [ "answers.com:http://www.answers.com/" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high fecundity", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001696" } ] }, "type" : "CLASS", - "lbl" : "increased fecundity" + "lbl" : "fasciculation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000363", + "id" : "http://xmlns.com/foaf/0.1/page", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "foaf-page" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "obsolete away" + "type" : "PROPERTY", + "lbl" : "page" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001211", + "id" : "http://purl.obolibrary.org/obo/PATO_0002425", "meta" : { + "definition" : { + "val" : "Open to view or not covered by another entity.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-20T11:47:16Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete solid_angle_quantity" + "lbl" : "exposed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000362", + "id" : "http://purl.obolibrary.org/obo/PATO_0002426", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a boat.", + "xrefs" : [ "wordnetweb:wordnetweb" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:12:03Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete direction value" + "lbl" : "scaphoid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001212", + "id" : "http://purl.obolibrary.org/obo/PATO_0002423", "meta" : { + "definition" : { + "val" : "A round or lobulated protruding form resembling a nipple.", + "xrefs" : [ "PATOC:MPATH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T03:13:44Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete length_unit" + "lbl" : "papillomatous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001696", + "id" : "http://purl.obolibrary.org/obo/PATO_0002424", "meta" : { "definition" : { - "val" : "A fecundity which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's having two or more entities that extend from a common point in different directions.", + "xrefs" : [ "PATOC:AD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low fecundity", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-20T11:43:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001695" } ] }, "type" : "CLASS", - "lbl" : "decreased fecundity" + "lbl" : "divergent from" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001693", + "id" : "http://purl.obolibrary.org/obo/PATO_0002429", "meta" : { "definition" : { - "val" : "A viscosity which relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter X.", + "xrefs" : [ "PATOC:WC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high viscosity", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001694" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:19:53Z" } ] }, "type" : "CLASS", - "lbl" : "increased viscosity" + "lbl" : "x-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002540", + "id" : "http://purl.obolibrary.org/obo/PATO_0002427", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's possessing a small, spike-like shape.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A surface feature shape having numerous very small circular rounded projections or protuberances.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-08-12T12:07:44Z" + "val" : "2013-01-29T09:15:53Z" } ] }, "type" : "CLASS", - "lbl" : "spur shaped" + "lbl" : "knobbled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000365", + "id" : "http://purl.obolibrary.org/obo/PATO_0002428", "meta" : { "definition" : { - "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction from a higher to a lower point.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A 3-D shape with three supports or legs.", + "xrefs" : [ "PATOC:WC" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000370" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:18:44Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "down" + "lbl" : "tripodal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002541", + "id" : "http://purl.obolibrary.org/obo/PATO_0002421", "meta" : { "definition" : { - "val" : "Pertaining to the ability or tendency of an organism or cell to maintain internal equilibrium by adjusting its physiological processes.", - "xrefs" : [ "GO:0042592" ] + "val" : "Having or resembling the characteristic of a cicatrix - a scar resulting from formation and contraction of fibrous tissue.", + "xrefs" : [ "mw:http://www.merriam-webster.com/dictionary/cicatricial" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-12-01T16:07:28Z" + "val" : "2012-12-17T03:08:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "haendel" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "homeostatic" + "lbl" : "cicatricial" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001210", + "id" : "http://purl.obolibrary.org/obo/PATO_0002422", "meta" : { + "definition" : { + "val" : "Pertaining to the individual parts making up an aggregate fruit like a many-lobed \"berry,\" such as a raspberry.", + "xrefs" : [ "wikipedia:https://en.wikipedia.org/wiki/Acinus" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T03:11:10Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Acinus is Latin for berry." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete plane_angle_quantity" + "lbl" : "acinar" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000364", + "id" : "http://purl.obolibrary.org/obo/PATO_0002420", + "meta" : { + "definition" : { + "val" : "Having both hydrophilic and hydrophobic (or lipophilic) groups.", + "xrefs" : [ "wikipedia:http://en.wiktionary.org/wiki/amphiphilic" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T03:04:39Z" + } ] + }, + "type" : "CLASS", + "lbl" : "amphiphilic" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001105", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute strain value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002436", + "meta" : { + "definition" : { + "val" : "A positional quality inhering in a bearer by virtue of the bearer's position being displaced from a reference point.", + "xrefs" : [ "PATOC:AD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:32:22Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete bi-directional" + "lbl" : "offset" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001694", + "id" : "http://purl.obolibrary.org/obo/PATO_0002437", "meta" : { "definition" : { - "val" : "A viscosity which relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being locked together or interconnected to another entity.", + "xrefs" : [ "merriam-webster:merriam-webster" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low viscosity", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001693" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:37:13Z" } ] }, "type" : "CLASS", - "lbl" : "decreased viscosity" + "lbl" : "interlocked with" }, { - "id" : "http://purl.obolibrary.org/obo/pato#correlates_with", + "id" : "http://purl.obolibrary.org/obo/PATO_0001106", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "correlates_with" + "type" : "CLASS", + "lbl" : "obsolete relative strain value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000378", + "id" : "http://purl.obolibrary.org/obo/PATO_0001103", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute frequency value" + "lbl" : "obsolete relative stiffness value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001226", + "id" : "http://purl.obolibrary.org/obo/PATO_0002434", "meta" : { + "definition" : { + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity.", + "xrefs" : [ "PATOC:WC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000070" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:29:55Z" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "perpendicular to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001227", + "id" : "http://purl.obolibrary.org/obo/PATO_0002435", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits variation or change.", - "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer touching another entity along a border or with a projecting part.", + "xrefs" : [ "merriam-webster:merriam-webster" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "variable", + "val" : "abut", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000438" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:31:12Z" } ] }, "type" : "CLASS", - "lbl" : "variant" + "lbl" : "abutting" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000377", + "id" : "http://purl.obolibrary.org/obo/PATO_0001104", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete frequency value" + "lbl" : "obsolete strain value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001224", + "id" : "http://purl.obolibrary.org/obo/PATO_0001109", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -13800,22 +14462,35 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete real number" + "lbl" : "obsolete absolute amplitude value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000379", + "id" : "http://purl.obolibrary.org/obo/PATO_0002438", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being located or placed beneath the skin.", + "xrefs" : [ "thefreedictionary:thefreedictionary" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "subcutaneous", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:41:50Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative frequency value" + "lbl" : "subdermal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001225", + "id" : "http://purl.obolibrary.org/obo/PATO_0001107", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -13826,9 +14501,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relational number" + "lbl" : "obsolete density value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001228", + "id" : "http://purl.obolibrary.org/obo/PATO_0001108", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -13839,171 +14514,227 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete dull" + "lbl" : "obsolete relative amplitude value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001229", + "id" : "http://purl.obolibrary.org/obo/PATO_0002439", "meta" : { "definition" : { - "val" : "A color saturation which is of high purity.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "An angular shape quality inhering in a bearer by virtue of the bearer's having two angles in its length giving the bearer the form of the letter W.", + "xrefs" : [ "PATOC:WC" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "vivid", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "bright", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000328" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:45:54Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "high saturation" + "lbl" : "w-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000370", + "id" : "http://purl.obolibrary.org/obo/PATO_0001101", "meta" : { - "definition" : { - "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction from a lower to a higher point.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000365" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "up" + "lbl" : "obsolete stiffness value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000372", + "id" : "http://purl.obolibrary.org/obo/PATO_0002432", "meta" : { + "definition" : { + "val" : "A shape that is in the form of a spade.", + "xrefs" : [ "PATOC:WC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:26:49Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute distance value" + "lbl" : "spade-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000371", + "id" : "http://purl.obolibrary.org/obo/PATO_0002433", "meta" : { + "definition" : { + "val" : "A surface feature shape marked by large amounts of relief, often with multiple ridges and grooves in close association. Topographically complex.", + "xrefs" : [ "PATOC:AD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T09:27:55Z" + } ] + }, + "type" : "CLASS", + "lbl" : "sculpted surface" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001102", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete distance value" + "lbl" : "obsolete absolute stiffness value" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0043227", + "id" : "http://purl.obolibrary.org/obo/PATO_0002430", "meta" : { "definition" : { - "val" : "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. 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Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.", - "xrefs" : [ "GOC:go_curators" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer being divided into four parts.", + "xrefs" : [ "PATOC:WC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T11:08:28Z" } ] }, "type" : "CLASS", - "lbl" : "intracellular organelle" + "lbl" : "quadripartite" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000376", + "id" : "http://purl.obolibrary.org/obo/PATO_0002448", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's being aligned or positioned towards another entity.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-02-16T02:57:06Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete flavor value" + "lbl" : "oriented towards" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001220", + "id" : "http://purl.obolibrary.org/obo/PATO_0001117", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -14055,106 +14800,118 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete angle_unit" + "lbl" : "obsolete absolute impulse value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001221", + "id" : "http://purl.obolibrary.org/obo/PATO_0002445", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being twisted or turned.", + "xrefs" : [ "freedictionary:freedictionary" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "twisted", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "The word \"torsion\" has multiple different meanings in different context (e.g. the act of twisting or the morphology of the digestive tract in gastropods). 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"synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "short distance", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000374" } ] }, "type" : "CLASS", - "lbl" : "decreased distance" + "lbl" : "obsolete relative energy value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000389", + "id" : "http://purl.obolibrary.org/obo/PATO_0002446", "meta" : { "definition" : { - "val" : "A quality of a process inhering in a bearer by virtue of the bearer's having a sudden onset, sharp rise, and short course.", - "xrefs" : [ "dictionary:reference" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an anchor.", + "xrefs" : [ "PATOC:WC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - 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"type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete impulse value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000388", + "id" : "http://purl.obolibrary.org/obo/PATO_0002449", "meta" : { + "definition" : { + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and mid-line surface of an organism relative to another entity.", + "xrefs" : [ "PATOC:WC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-02-16T03:00:46Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete intensity value" + "lbl" : "posteromedial to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001238", + "id" : "http://purl.obolibrary.org/obo/PATO_0001118", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001241" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete momentum value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001235", + "id" : "http://purl.obolibrary.org/obo/PATO_0001119", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -14165,168 +14922,144 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete strength value" + "lbl" : "obsolete absolute momentum value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001236", + "id" : "http://purl.obolibrary.org/obo/PATO_0002440", "meta" : { "definition" : { - "val" : "A quality which inheres in an process.", + "val" : "A surface feature shape quality inhering in a bearer by virtue of the degree of the bearer's highly topographical with ridges, pits, rugosity or other surface structures.", "xrefs" : [ "PATOC:GVG" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "relational quality of occurrent", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "quality of process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "quality of occurrent", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "quality of a process", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "See comments of relational quality of a physical entity." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001239" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001240" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T10:57:42Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "process quality" + "lbl" : "ornamentation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001239", + "id" : "http://purl.obolibrary.org/obo/PATO_0002443", "meta" : { + "definition" : { + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being located at the same level as another entity.", + "xrefs" : [ "PATOC:NI" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001236" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T11:01:46Z" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "level with" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0043231", + "id" : "http://purl.obolibrary.org/obo/PATO_0001112", "meta" : { - "definition" : { - "val" : "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. 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Excludes the plasma membrane.", - "xrefs" : [ "GOC:go_curators" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "intracellular membrane-enclosed organelle", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "intracellular membrane-bounded organelle" + "lbl" : "obsolete energy value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000381", + "id" : "http://purl.obolibrary.org/obo/PATO_0001113", "meta" : { - "definition" : { - "val" : "A frequency which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "infrequent", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "low frequency", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000380" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "decreased frequency" + "lbl" : "obsolete absolute energy value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000380", + "id" : "http://purl.obolibrary.org/obo/PATO_0002444", "meta" : { "definition" : { - "val" : "A frequency which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A composition quality inhering in a bearer by virtue of the bearer's being composed of or possessing inorganic material.", + "xrefs" : [ "PATOC:WC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high frequency", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "frequent", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000381" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T11:03:49Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "increased frequency" + "lbl" : "mineralized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001230", + "id" : "http://purl.obolibrary.org/obo/PATO_0002441", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's power or force.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures.", + "xrefs" : [ "PATOC:AD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002442" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T10:59:42Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "strength" + "lbl" : "ornamented" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000383", + "id" : "http://purl.obolibrary.org/obo/PATO_0001110", "meta" : { - "definition" : { - "val" : "A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.", - "xrefs" : [ "MGED:MGED" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "female" + "lbl" : "obsolete absolute density value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000382", + "id" : "http://purl.obolibrary.org/obo/pato#disposition_slim", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Disposition slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001111", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -14337,153 +15070,153 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete gender value" + "lbl" : "obsolete relative density value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001233", + "id" : "http://purl.obolibrary.org/obo/PATO_0002442", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the back or upper surface of an organism relative to another entity.", - "xrefs" : [ "PATOC:nw" ] + "val" : "A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures.", + "xrefs" : [ "PATOC:AD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "superior_to (human head)", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "dorsal", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "posterior_to (human torso)", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-01-29T11:00:20Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001234" + "val" : "http://purl.obolibrary.org/obo/PATO_0002441" } ] }, "type" : "CLASS", - "lbl" : "dorsal to" + "lbl" : "unornamented" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000385", + "id" : "http://purl.obolibrary.org/obo/GO_0031323", "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.", + "xrefs" : [ "GOC:mah" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of cellular metabolism", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "obsolete hardness value" + "lbl" : "regulation of cellular metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000384", + "id" : "http://purl.obolibrary.org/obo/PATO_0002458", "meta" : { "definition" : { - "val" : "A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A quality inhering in a bearer by virtue of the bearer being thin and lacking outgrowths.", + "xrefs" : [ "PATOC:JL" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-04-09T06:03:56Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "male" + "lbl" : "pin-like" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001234", + "id" : "http://purl.obolibrary.org/obo/RO_0002022", "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located further from a more centrally located entity.", - "xrefs" : [ "PATOC:nw" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "distal", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001233" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:24Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + } ] + }, + "type" : "PROPERTY", + "lbl" : "directly regulated by" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001127", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "distal to" + "lbl" : "obsolete work value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000387", + "id" : "http://purl.obolibrary.org/obo/PATO_0002459", "meta" : { "definition" : { - "val" : "A hardness quality of giving little resistance to pressure.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a sepal,", + "xrefs" : [ "PATOC:JL" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000386" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-04-09T06:04:36Z" } ] }, "type" : "CLASS", - "lbl" : "soft" + "lbl" : "sepal-like" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001231", + "id" : "http://purl.obolibrary.org/obo/RO_0002023", "meta" : { + "definition" : { + "val" : "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.", + "xrefs" : [ "GOC:dos" ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:38Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" } ] }, - "type" : "CLASS", - "lbl" : "obsolete cold insensitive" + "type" : "PROPERTY", + "lbl" : "directly negatively regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000386", + "id" : "http://purl.obolibrary.org/obo/PATO_0001128", "meta" : { - "definition" : { - "val" : "A hardness quality of being rigid and resistant to pressure.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "tough", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "impenetrable", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "firm", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000387" } ] }, "type" : "CLASS", - "lbl" : "hard" + "lbl" : "obsolete absolute work value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001232", + "id" : "http://purl.obolibrary.org/obo/PATO_0001125", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -14494,74 +15227,101 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete heat insentive" + "lbl" : "obsolete absolute pressure value" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000412", + "id" : "http://purl.obolibrary.org/obo/RO_0002024", "meta" : { + "definition" : { + "val" : "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.", + "xrefs" : [ "GOC:dos" ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-17T13:52:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" } ] }, "type" : "PROPERTY", - "lbl" : "imported from" + "lbl" : "directly positively regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/pato#relational_slim", + "id" : "http://purl.obolibrary.org/obo/PATO_0002456", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of an inflorescence.", + "xrefs" : [ "PATOC:JL" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Relational slim: types of quality that require an additional entity in order to exist" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-04-09T06:02:05Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, - "type" : "PROPERTY" + "type" : "CLASS", + "lbl" : "inflorescence-like" }, { - "id" : "http://purl.obolibrary.org/obo/pato#has_dividend_quality", + "id" : "http://purl.obolibrary.org/obo/PATO_0002457", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a leaf.", + "xrefs" : [ "PATOC:JL" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-04-09T06:02:58Z" } ] }, - "type" : "PROPERTY", - "lbl" : "has_dividend_quality" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0100001", - "type" : "PROPERTY", - "lbl" : "term replaced by" + "type" : "CLASS", + "lbl" : "leaf-like" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002385", + "id" : "http://purl.obolibrary.org/obo/RO_0002025", "meta" : { "definition" : { - "val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y", - "xrefs" : [ ] + "val" : "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.", + "xrefs" : [ "GOC:dos" ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-09-22T14:14:36Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations." } ] }, "type" : "PROPERTY", - "lbl" : "has potential to developmentally contribute to" + "lbl" : "has effector activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001248", + "id" : "http://purl.obolibrary.org/obo/PATO_0001126", "meta" : { - "definition" : { - "val" : "A color consisting of cyan hue and low brightness.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dark cyan" + "lbl" : "obsolete relative pressure value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000399", + "id" : "http://purl.obolibrary.org/obo/PATO_0001129", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -14572,105 +15332,135 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete life span value" + "lbl" : "obsolete relative work value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001249", + "id" : "http://purl.obolibrary.org/obo/PATO_0002450", "meta" : { "definition" : { - "val" : "A color consisting of green hue and low brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A hardness quality of giving significant resistance to pressure.", + "xrefs" : [ "PATOC:CM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-02-26T02:02:38Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dark green" + "lbl" : "firm" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002387", + "id" : "http://purl.obolibrary.org/obo/RO_0002019", "meta" : { "definition" : { - "val" : "x has the potential to develop into y iff x develops into y or if x is capable of developing into y", - "xrefs" : [ ] + "val" : "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.", + "xrefs" : [ "GOC:dos" ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-07-19T17:30:36Z" } ] }, "type" : "PROPERTY", - "lbl" : "has potential to develop into" + "lbl" : "has ligand" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001246", + "id" : "http://purl.obolibrary.org/obo/PATO_0002451", "meta" : { "definition" : { - "val" : "A color consisting of brown hue and high brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's exhibiting a phenotypic difference between males and females of the same species.", + "xrefs" : [ "PATOC:WC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-03-11T09:22:04Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "light brown" + "lbl" : "sexually dimorphic" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002388", + "id" : "http://purl.obolibrary.org/obo/PATO_0001120", "meta" : { - "definition" : { - "val" : "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "has potential to directly develop into" + "type" : "CLASS", + "lbl" : "obsolete relative momentum value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001247", + "id" : "http://purl.obolibrary.org/obo/PATO_0002454", "meta" : { "definition" : { - "val" : "A color consisting of cyan hue and high brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a carpel.", + "xrefs" : [ "PATO:JL" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-04-09T06:00:28Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "light cyan" + "lbl" : "carpel-like" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002384", + "id" : "http://purl.obolibrary.org/obo/PATO_0001123", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative power value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002015", "meta" : { "definition" : { - "val" : "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction).", + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:17Z" } ] }, "type" : "PROPERTY", - "lbl" : "has developmental potential involving" + "lbl" : "has positive regulatory component activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000392", + "id" : "http://purl.obolibrary.org/obo/PATO_0001124", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -14681,111 +15471,104 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete limited" + "lbl" : "obsolete pressure value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001240", + "id" : "http://purl.obolibrary.org/obo/PATO_0002455", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's architecture bearing resemblence to a corymb type of inflorescence.", + "xrefs" : [ "PATOC:JL" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001236" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-04-09T06:01:02Z" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "corymb-like" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000391", + "id" : "http://purl.obolibrary.org/obo/PATO_0001121", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete intense" + "lbl" : "obsolete power value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001241", + "id" : "http://purl.obolibrary.org/obo/RO_0002017", "meta" : { - "definition" : { - "val" : "A quality which inheres in a continuant.", - "xrefs" : [ "PATOC:GVG" ] - }, - "xrefs" : [ { - "val" : "snap:Quality" - } ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "quality of an object", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "quality of continuant", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "quality of a single physical entity", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "quality of a continuant", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "monadic quality of an object", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "monadic quality of continuant", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "monadic quality of a continuant", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "multiply inhering quality of a physical entity", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001237" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001238" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:44:33Z" }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles." + "val" : "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B." + } ] + }, + "type" : "PROPERTY", + "lbl" : "has component activity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002452", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer being thinner or more losely packed.", + "xrefs" : [ "PATOC:JL" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-04-08T08:43:31Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001485" } ] }, "type" : "CLASS", - "lbl" : "physical object quality" + "lbl" : "decondensed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000394", + "id" : "http://purl.obolibrary.org/obo/PATO_0002453", "meta" : { "definition" : { - "val" : "An intensity which is less than moderate in type or degree or effect or force.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer bring gradually worn away.", + "xrefs" : [ "PATOC:JL" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-04-08T08:45:08Z" } ] }, "type" : "CLASS", - "lbl" : "mild intensity" + "lbl" : "eroding" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000393", + "id" : "http://purl.obolibrary.org/obo/PATO_0001122", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -14796,140 +15579,159 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete maximal" + "lbl" : "obsolete absolute power value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001244", + "id" : "http://purl.obolibrary.org/obo/RO_0002018", "meta" : { "definition" : { - "val" : "A color consisting of blue hue and low brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:49:21Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" } ] }, - "type" : "CLASS", - "lbl" : "dark blue" + "type" : "PROPERTY", + "lbl" : "has component process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000396", + "id" : "http://purl.obolibrary.org/obo/PATO_0000686", "meta" : { - "definition" : { - "val" : "An intensity which is extremely bad or unpleasant in type or degree or effect or force.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "severe intensity" + "lbl" : "obsolete absolute rate value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000395", + "id" : "http://purl.obolibrary.org/obo/PATO_0000685", "meta" : { - "definition" : { - "val" : "An intensity which is less than extreme in type or degree or effect or force.", - "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "moderate intensity" + "lbl" : "obsolete relative incidence value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001245", + "id" : "http://purl.obolibrary.org/obo/PATO_0000688", "meta" : { "definition" : { - "val" : "A color consisting of brown hue and low brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000695" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dark brown" + "lbl" : "asynchronous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000398", + "id" : "http://purl.obolibrary.org/obo/RO_0002013", "meta" : { + "definition" : { + "val" : "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:30:46Z" } ] }, - "type" : "CLASS", - "lbl" : "obsolete vigorous" + "type" : "PROPERTY", + "lbl" : "has regulatory component activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001242", + "id" : "http://purl.obolibrary.org/obo/RO_0002014", "meta" : { "definition" : { - "val" : "A physical quality which is equal to the distance between repeating units of a wave pattern.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-05-24T09:31:01Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" } ] }, - "type" : "CLASS", - "lbl" : "wavelength" + "type" : "PROPERTY", + "lbl" : "has negative regulatory component activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000397", + "id" : "http://purl.obolibrary.org/obo/PATO_0000687", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete slight" + "lbl" : "obsolete relative rate value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001243", + "id" : "http://purl.obolibrary.org/obo/PATO_0000689", "meta" : { "definition" : { - "val" : "A color consisting of blue hue and high brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "uninterrupted", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000690" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000429" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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Examples include the velocity of propagation of an action potential along an axon.", + "xrefs" : [ "orcid:0000-0002-7073-9172" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-25T04:42:40Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "dos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2019-07-18T18:24:15Z" } ] }, "type" : "CLASS", - "lbl" : "alobate" + "lbl" : "propagation velocity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001659", + "id" : "http://purl.obolibrary.org/obo/PATO_0000694", "meta" : { "definition" : { - "val" : "A rotation quality inhering in a bearer by virtue of being rotated towards the abdomen of an organism.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality of a process which starts earlier than the natural start time or the reference process.", + "xrefs" : [ "PATO:LC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "advanced", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "early", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "precocious", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0002086" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000691" } ] }, "type" : "CLASS", - "lbl" : "ventrally rotated" + "lbl" : "premature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002507", + "id" : "http://purl.obolibrary.org/obo/pato#attribute_slim", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Attribute slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002409", "meta" : { "definition" : { - "val" : "A composition quality inhering in a bearer by virtue of the bearer's consisting of keratin.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "Bounded structure filled with fluid.", + "xrefs" : [ "PATOC:MPATH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:53:18Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-02-04T12:38:14Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "keratinous" + "lbl" : "fluid-filled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000326", + "id" : "http://purl.obolibrary.org/obo/GO_0043393", "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of protein binding.", + "xrefs" : [ "GOC:go_curators" ] + }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "obsolete dim" + "lbl" : "regulation of protein binding" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000329", + "id" : "http://purl.obolibrary.org/obo/PATO_0002403", "meta" : { "definition" : { - "val" : "A color pattern inhering in a bearer by virtue of bearer's being marked with irregularly shaped spots or blots of a different hue or degree of saturation.", - "xrefs" : [ "Dictionary.com:Dictionary.com" ] + "val" : "Affecting all regions without specificity of distribution.", + "xrefs" : [ "PATOC:MPTH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "blotched", + "val" : "generalised", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:41:37Z" } ] }, "type" : "CLASS", - "lbl" : "blotchy" + "lbl" : "generalized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002504", + "id" : "http://purl.obolibrary.org/obo/PATO_0002404", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodorsally.", - "xrefs" : [ "PATOC:WD" ] + "val" : "Affecting a segment or segments.", + "xrefs" : [ "PATOC:MPATH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "posterodorsally directed", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002527" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { @@ -15399,397 +16189,427 @@ "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:19:36Z" + "val" : "2012-12-17T10:43:13Z" } ] }, "type" : "CLASS", - "lbl" : "posterodorsal orientation" + "lbl" : "segmental" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001657", + "id" : "http://purl.obolibrary.org/obo/PATO_0002401", "meta" : { "definition" : { - "val" : "A osmolarity which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "characterised by an unidentifiable pattern.", + "xrefs" : [ "PATOC:MPATH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high osmolarity", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001656" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:37:55Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased osmolarity" + "lbl" : "random pattern" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000328", + "id" : "http://purl.obolibrary.org/obo/PATO_0002402", "meta" : { "definition" : { - "val" : "A color saturation which is of low purity.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "Multiple lesions some interconnecting with each other.", + "xrefs" : [ "PATOC:MPATH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "dull", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "pale", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001229" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:40:18Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "low saturation" + "lbl" : "multifocal to coalescing" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002505", + "id" : "http://purl.obolibrary.org/obo/PATO_0002407", "meta" : { "definition" : { - "val" : "A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Having become firm or hard especially by increase of fibrous elements.", + "xrefs" : [ "mw:http://www.merriam-webster.com/dictionary/indurated" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:49:11Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-21T05:44:34Z" } ] }, "type" : "CLASS", - "lbl" : "nucleated" + "lbl" : "indurated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001658", + "id" : "http://purl.obolibrary.org/obo/PATO_0002408", "meta" : { "definition" : { - "val" : "A rotatiotion quality inhering in a bearer by virtue of being rotated towards the back or upper surface of an organism.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Having the consistency of water.", + "xrefs" : [ "PATOC:MPATH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:51:32Z" } ] }, "type" : "CLASS", - "lbl" : "dorsally rotated" + "lbl" : "watery" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001651", + "id" : "http://purl.obolibrary.org/obo/PATO_0002405", "meta" : { "definition" : { - "val" : "A resistance to a stimulus which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's disposition to be reduced to smaller pieces with little effort.", + "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Friability" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "decreased resistance", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "low resistance to", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001650" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:47:16Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "decreased resistance to" + "lbl" : "friability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001652", + "id" : "http://purl.obolibrary.org/obo/PATO_0002406", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's spatial positioning with respect to an additional entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Easily reduced to powder or easily fragmentable or crumbly.", + "xrefs" : [ "PATOC:MPATH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:48:30Z" } ] }, "type" : "CLASS", - "lbl" : "alignment" + "lbl" : "friable" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000321", + "id" : "http://purl.obolibrary.org/obo/PATO_0002400", "meta" : { "definition" : { - "val" : "A color consisting of red and blue hues.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Magenta" ] + "val" : "Having a spindle-like shape that is wide in the middle and tapers at both ends.", + "xrefs" : [ "wikipedia:wikipedia" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-07T05:43:25Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "magenta" + "lbl" : "fusiform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000320", + "id" : "http://purl.obolibrary.org/obo/PATO_0002414", "meta" : { "definition" : { - "val" : "A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers.", - "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] + "val" : "A quality of duration having progressive course of indefinite duration with active, acute-like elements.", + "xrefs" : [ "PATOC:MPATH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:59:58Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "green" + "lbl" : "chronic-active" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001650", + "id" : "http://purl.obolibrary.org/obo/PATO_0002415", "meta" : { "definition" : { - "val" : "A resistance to a stimulus which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Single lesion with expansion into surrounding tissue.", + "xrefs" : [ "PATOC:MPATH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "increased resistance", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "high resistance to", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001651" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T11:01:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased resistance to" + "lbl" : "focally extensive" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0032991", + "id" : "http://purl.obolibrary.org/obo/PATO_0002412", "meta" : { "definition" : { - "val" : "A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.", - "xrefs" : [ "GOC:dos", "GOC:mah" ] + "val" : "A color consisting of yellow and brown hue and low brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "protein complex", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "protein containing complex", - 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Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole." + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "protein-containing complex" + "lbl" : "dark yellow brown" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0016020", + "id" : "http://purl.obolibrary.org/obo/PATO_0002413", "meta" : { "definition" : { - "val" : "A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.", - "xrefs" : [ "GOC:dos", "GOC:mah", "ISBN:0815316194" ] + "val" : "A color consisting of yellow and brown hue and high brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], - "xrefs" : [ { - "val" : "Wikipedia:Biological_membrane" - } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:57:27Z" } ] }, "type" : "CLASS", - "lbl" : "membrane" + "lbl" : "light yellow brown" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0000014", + "id" : "http://purl.obolibrary.org/obo/PATO_0002418", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/caro.owl" + "definition" : { + "val" : "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for acidic dyes under specific ph conditions.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "cell part (CARO)" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T03:01:19Z" } ] }, "type" : "CLASS", - "lbl" : "cell part" + "lbl" : "acidophilic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002519", + "id" : "http://purl.obolibrary.org/obo/PATO_0002419", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's having an open, latticed, or porous structure; used especially of bone.", - "xrefs" : [ "TheFreeDictionary:cancellous" ] + "val" : "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for eosin dye.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - 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"val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T12:06:55Z" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "sunken" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000334", + "id" : "http://purl.obolibrary.org/obo/PATO_0002417", "meta" : { + "definition" : { + "val" : "Extending through or affecting the entire thickness of the wall of an organ or cavity or boundary.", + "xrefs" : [ "PATOC:MPATH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T02:16:18Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000337" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "transmural" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002513", + "id" : "http://purl.obolibrary.org/obo/PATO_0002410", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's having a slanting direction (neither perpendicular nor parallel) relative to another entity.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "A colour that is very pale yellowish brown.", + "xrefs" : [ "PATOC:MPATH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-17T10:54:55Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - 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"subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "fused", + "xrefs" : [ ] + }, { "pred" : "hasRelatedSynonym", - "val" : "affixed to", + "val" : "merged with", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "attached", + "val" : "fused to", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "joined with", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "coalesced", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000651" } ] }, "type" : "CLASS", - 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"id" : "http://purl.obolibrary.org/obo/PATO_0002511", + "id" : "http://purl.obolibrary.org/obo/PATO_0001972", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a cane.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches branching into a reticulum toward the margin.", + "xrefs" : [ "Hickey:1988" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "cane-shaped", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-02-06T02:04:35Z" } ] }, "type" : "CLASS", - "lbl" : "cane-like" + "lbl" : "reticulodromous" }, { - 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"val" : "http://purl.obolibrary.org/obo/PATO_0000331" + "val" : "http://purl.obolibrary.org/obo/PATO_0000645" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000332" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "colored" + "lbl" : "hyperplastic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001665", + "id" : "http://purl.obolibrary.org/obo/PATO_0000643", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being located near a surface.", - "xrefs" : [ "Dictionary.com:Dictionary.com" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it.", + "xrefs" : [ "spinalstenosis:spinalstenosis" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "superficial to", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001471" } ] }, "type" : "CLASS", - "lbl" : "superficial" + "lbl" : "herniated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002512", + "id" : "http://purl.obolibrary.org/obo/PATO_0001973", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer flowing or coming together with another entity.", - "xrefs" : [ "Merriam-Webster:confluent" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being tapering gradually into a rigid point.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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}, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" } ] }, "type" : "CLASS", - "lbl" : "saddle-shaped" + "lbl" : "malformed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000338", + "id" : "http://purl.obolibrary.org/obo/PATO_0001979", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being partly divided into a determinate number of regions.", + "xrefs" : [ "ISBN:0881923214" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete compatability value" + "lbl" : "lobed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000337", + "id" : "http://purl.obolibrary.org/obo/PATO_0000645", "meta" : { "definition" : { - "val" : "A color quality inhering in a bearer by virtue of the bearer's lacking color.", + "val" : "A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hypoplasia", + "xrefs" : [ ] + }, { "pred" : "hasRelatedSynonym", - "val" : "unpigmented", + "val" : "underdeveloped", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000644" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000334" + "val" : "PATO:0000942" } ] }, "type" : "CLASS", - "lbl" : "colorless" + "lbl" : "hypoplastic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002518", + "id" : "http://purl.obolibrary.org/obo/PATO_0001976", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer being level or even with another surface.", - "xrefs" : [ "WordReference:flush" ] + "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having or lacking sharp straight-edged teeth pointing to the apex.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-02-10T01:26:50Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" } ] }, "type" : "CLASS", - "lbl" : "flush" + "lbl" : "serration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001668", + "id" : "http://purl.obolibrary.org/obo/PATO_0000648", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being in close proximity and physically interacting with another entity.", + "val" : "A morphological quality inhering in a bearer by virtue of the bearer's being blocked or filled with obstacles or an obstacle.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obstructed" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001977", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having at least one salient angle on the margin.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "associated", + "val" : "angulate", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -16033,737 +16859,559 @@ } ] }, "type" : "CLASS", - "lbl" : "associated with" + "lbl" : "angular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002515", + "id" : "http://purl.obolibrary.org/obo/PATO_0000647", "meta" : { "definition" : { - "val" : "An elevation quality inhering in a bearer by virtue the bearer's being in a high position relative to another entity.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's undergoing unprogrammed cell death.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Necrotic" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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}, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002491" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "anterodistal orientation" + "lbl" : "obsolete occurrent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002527", + "id" : "http://purl.obolibrary.org/obo/PATO_0000666", "meta" : { - "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally.", - "xrefs" : [ "PATOC:EJS" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "postero-distal orientation", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-03-11T11:29:22Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002504" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - 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"xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001669" } ] }, "type" : "CLASS", - "lbl" : "decreased susceptibility toward" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "type" : "PROPERTY", - "lbl" : "shorthand" + "lbl" : "unicellular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001673", + "id" : "http://purl.obolibrary.org/obo/PATO_0000665", "meta" : { "definition" : { - "val" : "Structure quality that is the presence of closed epithelium bounded capsules containing one or more liquid or solid organism substances.", + "val" : "A color brightness which is relatively high.", "xrefs" : [ "PATOC:MAH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "cysts", + "pred" : "hasExactSynonym", + "val" : "light", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Cystic is an abnormal condition." + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cystic" + "lbl" : "high brightness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002520", + "id" : "http://purl.obolibrary.org/obo/PATO_0001995", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer being shaped like a scute or an osteoderm.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "A quality that inheres in an entire organism or part of an organism.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-02-10T01:37:47Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "scute-like" + "lbl" : "organismal quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000341", + "id" : "http://purl.obolibrary.org/obo/GO_0010469", "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] + }, + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "regulation of receptor activity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "obsolete sporophytic compatability value" + "lbl" : "regulation of signaling receptor activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002521", + "id" : "http://purl.obolibrary.org/obo/PATO_0000668", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a funnel.", - "xrefs" : [ "PATOC:EJS" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-02-10T01:40:05Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "funnel-shaped" + "lbl" : "obsolete mass_quantity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000340", + "id" : "http://purl.obolibrary.org/obo/PATO_0000667", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -16774,167 +17422,257 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative compatability value" + "lbl" : "obsolete liquid substance value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001674", + "id" : "http://purl.obolibrary.org/obo/PATO_0001998", "meta" : { "definition" : { - "val" : "A concentration quality inhering in a bearer by virtue of the bearer's catalytic activity divided by the volume of the system.", - "xrefs" : [ "IUPAC:IUPAC" ] + "val" : "A quality inhering in a bearer by virtue of its visibility.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term was created as a grouping term for the 2 terms \"conspicuous\" and \"inconspicuous\". However, it is not clear if these terms should even remain in PATO." } ] }, "type" : "CLASS", - "lbl" : "catalytic (activity) concentration" + "lbl" : "conspicuousness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001671", + "id" : "http://purl.obolibrary.org/obo/PATO_0001999", "meta" : { "definition" : { - "val" : "A distribution which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high distribution", + "val" : "loss of", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001672" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased distribution" + "lbl" : "lacks parts or has fewer parts of type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000343", + "id" : "http://purl.obolibrary.org/obo/PATO_0000669", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete gametophyte incompatible value" + "lbl" : "obsolete concentration_unit" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000342", + "id" : "http://purl.obolibrary.org/obo/GO_0008152", "meta" : { + "definition" : { + "val" : "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.", + "xrefs" : [ "GOC:go_curators", "ISBN:0198547684" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "xrefs" : [ { + "val" : "MIPS_funcat:01" + }, { + "val" : "Wikipedia:Metabolism" + } ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "single-organism metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "multicellular organism metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "metabolism resulting in cell growth", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "metabolic process resulting in cell growth", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "metabolism", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions." }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044710" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "janelomax" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-10-17T15:46:40Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044236" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "obsolete gametophyte compatible value" + "lbl" : "metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001672", + "id" : "http://purl.obolibrary.org/obo/GO_0045936", "meta" : { "definition" : { - "val" : "A distribution which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates.", + "xrefs" : [ "GOC:go_curators" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low distribution", + "val" : "downregulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "negative regulation of phosphate metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of phosphate metabolic process", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001671" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "decreased distribution" - }, { - "id" : "http://purl.obolibrary.org/obo/pato#hpo_slim", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Human phenotype slim" - } ] - }, - "type" : "PROPERTY" + "lbl" : "negative regulation of phosphate metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002535", + "id" : "http://purl.obolibrary.org/obo/GO_0008150", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a short and stout cylindrical shape.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.", + "xrefs" : [ "GOC:pdt" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pombe", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "xrefs" : [ { + "val" : "Wikipedia:Biological_process" + } ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "single-organism process", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "single organism process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "physiological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "biological process", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code \"no data\" (ND), is used to indicate this." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" + "val" : "janelomax" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0007582" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0000004" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-08-12T11:30:08Z" - } ] - }, - "type" : "CLASS", - "lbl" : "peg-like" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001204", - "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "2012-09-19T15:05:24Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044699" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "obsolete not enlarged" + "lbl" : "biological_process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001688", + "id" : "http://purl.obolibrary.org/obo/GO_0045937", "meta" : { "definition" : { - "val" : "An elevation which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates.", + "xrefs" : [ "GOC:go_curators" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "elevated", + "pred" : "hasExactSynonym", + "val" : "upregulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of phosphate metabolic process", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "high elevation", + "val" : "up regulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of phosphate metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "positive regulation of phosphate metabolism", "xrefs" : [ ] } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "positive regulation of phosphate metabolic process" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001992", + "meta" : { + "definition" : { + "val" : "An organismal quality inhering in a bearer by virtue of the bearer's consisting cells.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001689" } ] }, "type" : "CLASS", - "lbl" : "increased elevation" + "lbl" : "cellularity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000356", + "id" : "http://purl.obolibrary.org/obo/PATO_0000660", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -16945,77 +17683,69 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete concentration value" + "lbl" : "obsolete angle_quantity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002536", + "id" : "http://purl.obolibrary.org/obo/PATO_0001993", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a boomerang, with two arms connected at an angle.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A cellularity quality inhering in a bearer by virtue of the bearer's consisting of more than one cell.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "multicellular" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000662", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-08-12T11:32:16Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "boomerang shaped" + "lbl" : "obsolete volume_quantity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001205", + "id" : "http://purl.obolibrary.org/obo/PATO_0001990", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having toothlike projections in the margin.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A duration quality of a process inhering in a disease by virtue of the bearer's duration of an impairment of health or of a condition of abnormal functioning.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "toothed", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "dentate", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "MAH: I think this term should be obsoleted. Is it used?" } ] }, "type" : "CLASS", - "lbl" : "dentated" + "lbl" : "duration of disease" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001689", + "id" : "http://purl.obolibrary.org/obo/PATO_0001991", "meta" : { "definition" : { - "val" : "An elevation which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to being capable of indefinite growth or division.", + "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low elevation", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001688" } ] }, "type" : "CLASS", - "lbl" : "decreased elevation" + "lbl" : "immortal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000355", + "id" : "http://purl.obolibrary.org/obo/PATO_0000661", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -17026,30 +17756,26 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete enzyme composition value" + "lbl" : "obsolete solid substance value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002533", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_376913", + "type" : "CLASS", + "lbl" : "Haplorrhini" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000675", "meta" : { - "definition" : { - "val" : "A multipartite quality inhering in a bearer by virtue of the bearer being divided into two parts.", - "xrefs" : [ "PATOC:WD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-08-12T11:12:13Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "bipartite" + "lbl" : "obsolete body temperature value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000358", + "id" : "http://purl.obolibrary.org/obo/PATO_0000674", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -17060,150 +17786,91 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete sugar concentration value" + "lbl" : "obsolete absolute temperature value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001202", + "id" : "http://purl.obolibrary.org/obo/PATO_0000677", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001306" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000586" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001686", + "id" : "http://purl.obolibrary.org/obo/PATO_0000676", "meta" : { - "definition" : { - "val" : "A magnetic quality inhering in a bearer by virtue of the bearer's inability to exert magnitism.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001685" - } ] - }, - "type" : "CLASS", - "lbl" : "non-magnetic" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001687", - "meta" : { - "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's vertical distance of a point above or below a reference surface.", - "xrefs" : [ "Trailillustrated:Trailillustrated" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "elevation" + "lbl" : "obsolete relative temperature value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002534", + "id" : "http://purl.obolibrary.org/obo/PATO_0000679", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a plowshare.", - "xrefs" : [ "PATOC:WD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "xrefs" : [ { - "val" : "Image:http://2.bp.blogspot.com/_TbkIC-eqFNM/S66IJ3omNWI/AAAAAAAAFSk/pzThLJPvYZw/s1600/ard-detail.gif" - } ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "plow-share shaped", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-08-12T11:23:12Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "plowshare shaped" + "lbl" : "obsolete temporal value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001203", + "id" : "http://purl.obolibrary.org/obo/PATO_0000678", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001873" + "val" : "http://purl.obolibrary.org/obo/PATO_0001305" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000357", + "id" : "http://purl.obolibrary.org/obo/PATO_0000671", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete protein concentration value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001208", - "meta" : { - "definition" : { - "val" : "An odor quality inhering in a bearer by virtue of the bearer's lacking odour.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "odorless" + "lbl" : "obsolete water value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002539", + "id" : "http://purl.obolibrary.org/obo/PATO_0000670", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a ring (a circular shape enclosing a space).", - "xrefs" : [ "PATOC:WD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-08-12T12:01:56Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "ring shaped" + "lbl" : "obsolete saccharin versus water value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000359", + "id" : "http://purl.obolibrary.org/obo/PATO_0000673", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -17214,9 +17881,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete water content value" + "lbl" : "obsolete temperature value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001209", + "id" : "http://purl.obolibrary.org/obo/PATO_0000672", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -17227,238 +17894,247 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute function" + "lbl" : "obsolete unit" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002537", + "id" : "http://purl.obolibrary.org/obo/PATO_0001938", "meta" : { "definition" : { - "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a shape not quite ovoid. approximately ovoid.", - "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/subovoid" ] + "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's being oval and a little angular in the middle.", + "xrefs" : [ "ISBN:0881923214" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-08-12T11:51:38Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" } ] }, "type" : "CLASS", - "lbl" : "subovoid" + "lbl" : "rhomboid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001206", + "id" : "http://purl.obolibrary.org/obo/PATO_0000606", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex.", - "xrefs" : [ "ISBN:0881923214" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "serrate", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001975" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "serrated" + "lbl" : "obsolete absolute angle value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002538", + "id" : "http://purl.obolibrary.org/obo/PATO_0000605", "meta" : { - "definition" : { - "val" : "A shape quality that obtains by virtue of the bearer being concave on one side and convex on the other.", - "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/concavo-convex" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "concavoconvex", + "pred" : "hasRelatedSynonym", + "val" : "position", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "location", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-08-12T11:56:13Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "concavo-convex" + "lbl" : "obsolete placement value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001207", + "id" : "http://purl.obolibrary.org/obo/PATO_0001939", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000967" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute compatability" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001680", + "id" : "http://purl.obolibrary.org/obo/PATO_0001936", "meta" : { "definition" : { - "val" : "A volume quality inhering in a homogeneous substance containing 6.02 x 1023 atoms or molecules by virtue of the amount of 3-dimensional space it occupies.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Molar_volume" ] + "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's being egg-shaped and flat, with the narrow end attached to the base.", + "xrefs" : [ "wordreference:wordreference" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "obovoid", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "molar volume" + "lbl" : "obovate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001681", + "id" : "http://purl.obolibrary.org/obo/PATO_0000608", "meta" : { "definition" : { - "val" : "A physical quality that inheres in a homogeneous substance containing 6.02 x 1023 atoms or molecules.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Molar_mass" ] + "val" : "A morphological quality inhering in a bearer by virtue of the bearer's affording blocked passage or view.", + "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "blocked", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - } ] + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000610" + } ] }, "type" : "CLASS", - "lbl" : "molar mass" + "lbl" : "closed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000350", + "id" : "http://purl.obolibrary.org/obo/PATO_0001937", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being oblong, with the lower end very much attenuated.", + "xrefs" : [ "ISBN:0881923214" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "spathulate", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete electrolyte composition value" + "lbl" : "spatulate" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002334", + "id" : "http://purl.obolibrary.org/obo/PATO_0000607", "meta" : { - "definition" : { - "val" : "inverse of regulates", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "regulated by (processual)" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "PROPERTY", - "lbl" : "regulated by" + "type" : "CLASS", + "lbl" : "obsolete relative angle value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002531", + "id" : "http://purl.obolibrary.org/obo/PATO_0000609", "meta" : { + "definition" : { + "val" : "A morphological quality inhering in a bearer by virtue of the bearer's affording not completed blocked passage or view.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "PATO:0002631" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "obsoleted because the ID was accidentally reused" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete refractory" + "lbl" : "closure incomplete" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000352", + "id" : "http://purl.obolibrary.org/obo/PATO_0001930", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001931" } ] }, "type" : "CLASS", - "lbl" : "obsolete metabolite composition value" + "lbl" : "variant shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001684", + "id" : "http://purl.obolibrary.org/obo/PATO_0001931", "meta" : { "definition" : { - "val" : "A magnetism which is relatively low.", + "val" : "A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low magnetism", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001683" + "val" : "http://purl.obolibrary.org/obo/PATO_0001930" } ] }, "type" : "CLASS", - "lbl" : "decreased magnetism" + "lbl" : "invariant shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001200", + "id" : "http://purl.obolibrary.org/obo/PATO_0000600", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter T.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A width which is relatively large.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "broad", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "wide", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "wide/broad", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000599" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "T-shaped" + "lbl" : "increased width" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001201", + "id" : "http://purl.obolibrary.org/obo/PATO_0001934", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter Y.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being perfectly circular.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "Y-shaped" + "lbl" : "orbicular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000351", + "id" : "http://purl.obolibrary.org/obo/PATO_0000602", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -17469,195 +18145,188 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete macromolecular composition value" + "lbl" : "obsolete angle value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002532", + "id" : "http://purl.obolibrary.org/obo/PATO_0000601", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "PATO:0002632" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "obsoleted because the ID was accidentally reused" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete secondary" + "lbl" : "obsolete spatial value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001685", + "id" : "http://purl.obolibrary.org/obo/PATO_0001935", "meta" : { "definition" : { - "val" : "A magnetic quality inhering in a bearer by virtue of the bearer's ability to exert magnitism.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being roundish, a little inclining to be oblong.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "roundish", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001686" } ] }, "type" : "CLASS", - "lbl" : "magnetic" + "lbl" : "obtuse" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002335", + "id" : "http://purl.obolibrary.org/obo/PATO_0000604", "meta" : { - "definition" : { - "val" : "inverse of negatively regulates", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "PROPERTY", - "lbl" : "negatively regulated by" + "type" : "CLASS", + "lbl" : "obsolete orientation value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001682", + "id" : "http://purl.obolibrary.org/obo/PATO_0001932", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to exert an attractive or repulsive force on other entities.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Magnetism" ] + "val" : "A pattern quality inhering in a bearer by virtue of the bearer's being placed alternately one above the other.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "magnetism" + "lbl" : "alternate placement" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000354", + "id" : "http://purl.obolibrary.org/obo/PATO_0000603", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete protein composition value" + "lbl" : "obsolete closure value" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002336", + "id" : "http://purl.obolibrary.org/obo/PATO_0001933", "meta" : { "definition" : { - "val" : "inverse of positively regulates", - "xrefs" : [ ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned on opposite sides on the same plane.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "positively regulated by" + "type" : "CLASS", + "lbl" : "opposite" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000353", + "id" : "http://purl.obolibrary.org/obo/PATO_0000617", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length.", + "xrefs" : [ "PATOC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "angled", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete secondary product composition value" + "lbl" : "bent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002530", + "id" : "http://purl.obolibrary.org/obo/PATO_0001949", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly in a little point.", + "xrefs" : [ "ISBN:0881923214" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "PATO:0002630" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "obsoleted because the ID was accidentally reused" } ] }, "type" : "CLASS", - "lbl" : "obsolete episodic" + "lbl" : "pointleted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001683", + "id" : "http://purl.obolibrary.org/obo/PATO_0000616", "meta" : { "definition" : { - "val" : "A magnetism which is relatively high.", + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's lacking symmetry.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high magnetism", + "val" : "asymmetry", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "asymmetric", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001684" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased magnetism" + "lbl" : "asymmetrical" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001619", + "id" : "http://purl.obolibrary.org/obo/PATO_0000619", "meta" : { "definition" : { - "val" : "A tonicity which is relatively low.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being overfilled.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low tonicity", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001618" + "val" : "http://purl.obolibrary.org/obo/PATO_0000633" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased tonicity" + "lbl" : "crowded" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001617", + "id" : "http://purl.obolibrary.org/obo/PATO_0001947", "meta" : { "definition" : { - "val" : "A morphological quality inhering in a bearer by virtue of the bearer's being distorted in form.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A color pattern inhering in a bearer by virtue of bearer's being covered with reticulated lines of a different hue or degree of saturation.", + "xrefs" : [ "ISBN:0881923214" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "distorted", + "pred" : "hasExactSynonym", + "val" : "net-like", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "disfigured", + "pred" : "hasExactSynonym", + "val" : "reticulated", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -17666,228 +18335,184 @@ } ] }, "type" : "CLASS", - "lbl" : "deformed" + "lbl" : "netted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001618", + "id" : "http://purl.obolibrary.org/obo/PATO_0001948", "meta" : { "definition" : { - "val" : "A tonicity which is relatively high.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by two or more parallel channels.", + "xrefs" : [ "PATOC:JE" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high tonicity", + "pred" : "hasRelatedSynonym", + "val" : "fluted", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001619" } ] }, "type" : "CLASS", - "lbl" : "increased tonicity" + "lbl" : "furrowed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000763", + "id" : "http://purl.obolibrary.org/obo/PATO_0000618", "meta" : { "definition" : { - "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's being affected by loss of the ability to move a body part.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's having two sides; two-sided.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "palsy", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "paralysed" + "lbl" : "bilateral" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001611", + "id" : "http://purl.obolibrary.org/obo/PATO_0001941", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits color variation or change.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A color consisting of yellow and green hues.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "variability of color" + "lbl" : "yellow green" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000762", + "id" : "http://purl.obolibrary.org/obo/PATO_0001942", "meta" : { "definition" : { - "val" : "Diminished, damaged, or weakened.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "A color consisting of brown and green hues.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "olive green", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", - "val" : "PATO:0001624" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete impaired" + "lbl" : "brown green" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002331", + "id" : "http://purl.obolibrary.org/obo/PATO_0000611", "meta" : { - "definition" : { - "val" : "c involved_in p if and only if c enables some process p', and p' is part of p", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "enables part of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "actively involved in" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://wiki.geneontology.org/index.php/Involved_in" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "involved in" + "type" : "CLASS", + "lbl" : "obsolete absolute orientation value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001612", + "id" : "http://purl.obolibrary.org/obo/PATO_0001940", "meta" : { "definition" : { - "val" : "A variability of color which is relatively high.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A size quality inhering in a bearer by virtue of the bearer's being many folds greater relative to the normal average.", + "xrefs" : [ "PATOC:UMH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high variability of color", + "val" : "giant", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001613" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased variability of color" + "lbl" : "gigantic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000765", + "id" : "http://purl.obolibrary.org/obo/PATO_0000610", "meta" : { + "definition" : { + "val" : "A morphological quality inhering in a bearer by virtue of the bearer's affording unobstructed passage or view.", + "xrefs" : [ "answers.com:answers.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000608" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute consumption value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001610", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000967" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS" + "lbl" : "open" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000764", + "id" : "http://purl.obolibrary.org/obo/PATO_0000613", "meta" : { "definition" : { - "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's receiving or being subjected to an action without responding or initiating an action in return.", - "xrefs" : [ "www.answers.com:www.answers.com" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's lacking orientation.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000614" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "passive" + "lbl" : "disoriented" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002333", + "id" : "http://purl.obolibrary.org/obo/PATO_0001945", "meta" : { "definition" : { - "val" : "inverse of enables", - "xrefs" : [ ] + "val" : "A moderate yellow-orange to orange color.", + "xrefs" : [ "wordreference:wordreference" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "enabled by" + "type" : "CLASS", + "lbl" : "ochre" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001615", + "id" : "http://purl.obolibrary.org/obo/PATO_0001946", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of colour.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A color pattern inhering in a bearer by virtue of bearer's exhibiting transverse stripes of one hue or degree of saturation crossing another.", + "xrefs" : [ "ISBN:0881923214" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "striped", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001614" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "variant color" + "lbl" : "banded" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000767", + "id" : "http://purl.obolibrary.org/obo/PATO_0000612", "meta" : { - "definition" : { - "val" : "A consumption which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "increased propensity to consume", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "high consumption", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Use GO:0007631" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { @@ -17896,424 +18521,364 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete increased consumption" + "lbl" : "obsolete relative orientation value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0055001", + "id" : "http://purl.obolibrary.org/obo/PATO_0001943", "meta" : { "definition" : { - "val" : "A spatial distribution of a process in which the process occupies a smaller length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type.", - "xrefs" : [ "orcid:0000-0003-4148-4606" ] + "val" : "A purple color which has low saturation and low brightness.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "midori" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2019-07-29T14:22:24Z" } ] }, "type" : "CLASS", - "lbl" : "decreased spatial extent of a process" + "lbl" : "lilac" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001616", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000700" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0055002", + "id" : "http://purl.obolibrary.org/obo/PATO_0000615", "meta" : { "definition" : { - "val" : "A spatial distribution of a process in which the process occupies a greater length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type.", - "xrefs" : [ "https://orcid.org/0000-0003-4148-4606" ] + "val" : "An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally anterior structures.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "anterioralized", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2019-07-29T14:23:31Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "midori" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased spatial extent of a process" + "lbl" : "wholly anterioralized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000766", + "id" : "http://purl.obolibrary.org/obo/PATO_0001944", "meta" : { + "definition" : { + "val" : "A color consisting of yellow and orange hue.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative consumption value" + "lbl" : "yellow orange" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001613", + "id" : "http://purl.obolibrary.org/obo/PATO_0000614", "meta" : { "definition" : { - "val" : "A variability of color which is relatively low.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A pattern where all the repeated elements are oriented in the same direction.", + "xrefs" : [ "PATOC:MAH" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low variability of color", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001612" + "val" : "http://purl.obolibrary.org/obo/PATO_0000613" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased variability of color" + "lbl" : "oriented" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000769", + "id" : "http://purl.obolibrary.org/obo/PATO_0000628", "meta" : { "definition" : { - "val" : "A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement.", + "val" : "A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000770" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "ectopic", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "mislocalized", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000621" } ] }, "type" : "CLASS", - "lbl" : "coordinated" + "lbl" : "mislocalised" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001614", + "id" : "http://purl.obolibrary.org/obo/PATO_0000627", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of color.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A spatial pattern quality inhering in a bearer by virtue of the bearer's being confined or restricted to a particular location.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001615" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "localised", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "focal", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "invariant color" + "lbl" : "localized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000768", + "id" : "http://purl.obolibrary.org/obo/PATO_0001958", "meta" : { "definition" : { - "val" : "A consumption which is relatively low.", + "val" : "A variability of size which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low consumption", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "decreased propensity to consume", + "val" : "high variability of size", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Use GO:0007631" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001957" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "mereotopologically related to" + "type" : "CLASS", + "lbl" : "wholly dorsalized" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002324", + "id" : "http://purl.obolibrary.org/obo/PATO_0001952", "meta" : { "definition" : { - "val" : "A relationship that holds between entities participating in some developmental process (GO:0032502)", - "xrefs" : [ ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being arranged in two opposite rows (and hence in the same plane).", + "xrefs" : [ "ISBN:0881923214" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "developmentally related to" + "type" : "CLASS", + "lbl" : "distichous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000761", + "id" : "http://purl.obolibrary.org/obo/PATO_0001953", "meta" : { "definition" : { - "val" : "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A pattern quality inhering in a bearer by virtue of the bearer's consisting of paired parts that alternately cross each other.", + "xrefs" : [ "ISBN:0881923214" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "hypoactive", + "val" : "crosscutting", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "intersecting", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "intercrossing", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000760" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased behavioural activity" + "lbl" : "decussate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000760", + "id" : "http://purl.obolibrary.org/obo/PATO_0000622", "meta" : { "definition" : { - "val" : "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being upright in position or posture.", + "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "hyperactive", + "val" : "upright", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000761" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased behavioural activity" + "lbl" : "erect" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001628", + "id" : "http://purl.obolibrary.org/obo/PATO_0001950", "meta" : { "definition" : { - "val" : "A wholeness quality inhering in a bearer by virtue of the bearer's lacks enough functionality.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's terminating gradually in a rounded end.", + "xrefs" : [ "ISBN:0881923214" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "inadequate", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001627" } ] }, "type" : "CLASS", - "lbl" : "insufficient" + "lbl" : "blunt" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001629", + "id" : "http://purl.obolibrary.org/obo/PATO_0001951", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being in opposition round a common axis.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "clumped", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "clustered", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "aggregated" + "lbl" : "whorled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001622", + "id" : "http://purl.obolibrary.org/obo/PATO_0000621", "meta" : { - "definition" : { - "val" : "A turgor which is relatively high.", - "xrefs" : [ "PATO:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high turgor", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001621" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000628" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "increased turgor" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000774", + "id" : "http://purl.obolibrary.org/obo/PATO_0000624", "meta" : { + "definition" : { + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's becoming joined together with an additional entity.", + "xrefs" : [ "PATOC:nw" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "introduced into", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "inserted", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete bizarre gate" + "lbl" : "inserted into" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000773", + "id" : "http://purl.obolibrary.org/obo/PATO_0001956", "meta" : { "definition" : { - "val" : "A discrimination quality in a bearer by virtue of the bearer's liking a perceived stimulus.", + "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits size variation or change.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "preference" + "lbl" : "variability of size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001623", + "id" : "http://purl.obolibrary.org/obo/PATO_0000623", "meta" : { "definition" : { - "val" : "A size quality inhering in a bearer by virtue of a part or parts of the bearer's being decreased in size due to reduction in tissue mass through wasting.", - "xrefs" : [ "Wiikipedia:Wasting", "Wikipedia:Atrophy" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's protruding or projecting from the body.", + "xrefs" : [ "sdvc:sdvc" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "atrophic", + "pred" : "hasRelatedSynonym", + "val" : "prolapsed", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "prolapse", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -18322,392 +18887,372 @@ } ] }, "type" : "CLASS", - "lbl" : "atrophied" + "lbl" : "exserted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000776", + "id" : "http://purl.obolibrary.org/obo/PATO_0001957", "meta" : { + "definition" : { + "val" : "A variability of size which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low variability of size", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001958" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete memory value" + "lbl" : "decreased variability of size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001620", + "id" : "http://purl.obolibrary.org/obo/PATO_0000626", "meta" : { "definition" : { - "val" : "A structural quality inhering in a cell or blood vessel or capillary by virtue of the bearer's being in a rigid state of fullness resulting from pressure of the contents against the wall or membrane.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being moved or displaced to one side so as to make lateral.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "turgor" + "lbl" : "lateralized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000775", + "id" : "http://purl.obolibrary.org/obo/PATO_0001954", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being linear, very narrow, tapering to a very fine point from a narrow base.", + "xrefs" : [ "ISBN:0881923214" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "needle-like", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "awl-shaped", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete learning value" + "lbl" : "subulate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001621", + "id" : "http://purl.obolibrary.org/obo/PATO_0001955", "meta" : { "definition" : { - "val" : "A turgor which is relatively low.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being narrowly triangular, wider at the apex and tapering toward the base.", + "xrefs" : [ "wordreference:wordreference" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low turgor", + "val" : "wedge-shaped", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001622" } ] }, "type" : "CLASS", - "lbl" : "decreased turgor" + "lbl" : "cuneate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001626", + "id" : "http://purl.obolibrary.org/obo/PATO_0000625", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of whether the bearer has enough functionality.", - "xrefs" : [ "PATO:GVG" ] + "val" : "An oriented quality inhering in a bearer by virtue of the bearer's being reversed in position, order, or condition.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "adequacy", + "val" : "backward", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "reversed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term and children should probably be obsoleted." } ] }, "type" : "CLASS", - "lbl" : "sufficiency" + "lbl" : "inverted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000778", + "id" : "http://purl.obolibrary.org/obo/PATO_0000639", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer whose structure deteriorates or is lost over time due to an active pathological process.", + "xrefs" : [ "PATOC:PortlandMeetingFeb2015", "PATOC:mb" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "degeneration", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002038" } ] }, "type" : "CLASS", - "lbl" : "obsolete short term memory value" + "lbl" : "degenerate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001627", + "id" : "http://purl.obolibrary.org/obo/PATO_0000638", "meta" : { "definition" : { - "val" : "A wholeness quality inhering in a bearer by virtue of the bearer's has enough functionality.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's consisting of blebbing of the nucleus and DNA fragmentation due to the cell undergoing a specific form of programmed cell death termed apoptosis.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "adequate", - "xrefs" : [ ] + "xrefs" : [ { + "val" : "GO:0006915" } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001628" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sufficient" + "lbl" : "apoptotic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000777", + "id" : "http://purl.obolibrary.org/obo/PATO_0001969", "meta" : { + "definition" : { + "val" : "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches terminating at the margin.", + "xrefs" : [ "Hickey:1988" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete long term memory value" + "lbl" : "craspedodromous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001624", + "id" : "http://purl.obolibrary.org/obo/PATO_0001963", "meta" : { "definition" : { - "val" : "A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s).", - "xrefs" : [ "PATO:MAH" ] + "val" : "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled backwards spirally on each side.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "having decreased function", - "xrefs" : [ ] - }, { - "pred" : "hasBroadSynonym", - "val" : "dysfunction", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "low functionality", - "xrefs" : [ ] - }, { - "pred" : "hasBroadSynonym", - "val" : "dysfunctional", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "impaired", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "lacks function of type", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "partial functionality", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001625" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001642" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001641" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001568" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001556" } ] }, "type" : "CLASS", - "lbl" : "decreased functionality" + "lbl" : "revolute" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001625", + "id" : "http://purl.obolibrary.org/obo/PATO_0000631", "meta" : { "definition" : { - "val" : "A functional quality held by the bearer when the latter exhibits increased ability to perform a regular function(s).", - "xrefs" : [ "PATO:MAH" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being stretched out and lying at full length along the ground.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "prostrate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000630", + "meta" : { + "definition" : { + "val" : "A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally posterior structures.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high functionality", + "pred" : "hasRelatedSynonym", + "val" : "posterioralized", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001624" } ] }, "type" : "CLASS", - "lbl" : "increased functionality" + "lbl" : "wholly posterioralized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000779", + "id" : "http://purl.obolibrary.org/obo/PATO_0001964", "meta" : { + "definition" : { + "val" : "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled spirally downwards.", + "xrefs" : [ "ISBN:0881923214" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute locomotor activity value" + "lbl" : "circinate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000770", + "id" : "http://purl.obolibrary.org/obo/PATO_0000633", "meta" : { "definition" : { - "val" : "A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement.", + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being not overfilled.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000769" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000619" } ] }, "type" : "CLASS", - "lbl" : "uncoordinated" + "lbl" : "uncrowded" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000772", + "id" : "http://purl.obolibrary.org/obo/PATO_0001961", "meta" : { "definition" : { - "val" : "A preference quality in a bearer by virtue of the bearer's having no preference to a perceived stimulus.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's touching another entity.", + "xrefs" : [ "PATOC:wdahdul" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "contiguous", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "indifference" + "lbl" : "in contact with" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002314", + "id" : "http://purl.obolibrary.org/obo/PATO_0000632", "meta" : { "definition" : { - "val" : "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.", - "xrefs" : [ ] + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division by a longitudinal plane into similar halves.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "symmetric", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "similar pattern in both halves" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "inheres in part of" + "type" : "CLASS", + "lbl" : "symmetrical" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000771", + "id" : "http://purl.obolibrary.org/obo/PATO_0001962", "meta" : { "definition" : { - "val" : "A preference quality in a bearer by virtue of the bearer's disliking a perceived stimulus.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled inwards spirally on each side.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "aversion" + "lbl" : "involute" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000309", + "id" : "http://purl.obolibrary.org/obo/PATO_0001967", "meta" : { "definition" : { - "val" : "An age which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A branched quality inhering in a bearer by virtue of the bearer's having three or more primary branches diverging radially from a single point.", + "xrefs" : [ "Hickey:1988" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000308" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "young" + "lbl" : "actinodromous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000308", + "id" : "http://purl.obolibrary.org/obo/PATO_0000635", "meta" : { "definition" : { - "val" : "An age which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's not being confined or restricted to a particular location.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000309" } ] }, "type" : "CLASS", - "lbl" : "old" + "lbl" : "unlocalised" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001639", + "id" : "http://purl.obolibrary.org/obo/PATO_0001968", "meta" : { "definition" : { - "val" : "A necessity quality inhering in a process by virtue of the bearer's being non-essential or dispensable.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A branched quality inhering in a bearer by virtue of the bearer's having two or more parallel primary branches originate beside each other and converge apically.", + "xrefs" : [ "Hickey:1988" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001638" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "unnecessary (occurrent)" + "lbl" : "parallelodromous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001633", + "id" : "http://purl.obolibrary.org/obo/PATO_0000634", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear of an organism relative to another entity.", - "xrefs" : [ "PATOC:nw" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's involvement of only one part or side.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "superior (human head)", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "posterior (human torso)", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "posterior to" + "lbl" : "unilateral" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000785", + "id" : "http://purl.obolibrary.org/obo/PATO_0000637", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -18718,551 +19263,601 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete muscle function value" + "lbl" : "obsolete structure value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000301", + "id" : "http://purl.obolibrary.org/obo/PATO_0001965", "meta" : { + "definition" : { + "val" : "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being bent down upon their stalk.", + "xrefs" : [ "ISBN:0881923214" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute speed value" + "lbl" : "reclinate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000300", + "id" : "http://purl.obolibrary.org/obo/PATO_0000636", "meta" : { "definition" : { - "val" : "A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely.", + "val" : "A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally ventral structures.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "fixed", + "val" : "ventralized", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000299" } ] }, "type" : "CLASS", - "lbl" : "immobile" + "lbl" : "wholly ventralized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001634", + "id" : "http://purl.obolibrary.org/obo/PATO_0001966", "meta" : { "definition" : { - "val" : "A quality of a single physical entity inhering in a bearer by virtue of whether the bearer is essential or indispensable.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A curled quality inhering in a bearer by virtue of the bearer's one edge of its surface being wholly rolled up in another.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "necessity (continuant)" + "lbl" : "convolute" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000784", + "id" : "http://purl.obolibrary.org/obo/PATO_0001960", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's parts or projections being interlocked; for example, the fingers of two hands that are clasped.", + "xrefs" : [ "PATOC:wdahdul" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete excretory function value" + "lbl" : "interdigitated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000787", + "id" : "http://purl.obolibrary.org/obo/IAO_0000589", "meta" : { + "definition" : { + "val" : "An alternative name for a class or property which is unique across the OBO Foundry.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Chris Mungall" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBO Foundry " + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "OBO foundry unique label" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Bjoern Peters" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools ." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Melanie Courtot" } ] }, - "type" : "CLASS", - "lbl" : "obsolete neurobehavioral function value" + "type" : "PROPERTY", + "lbl" : "OBO foundry unique label" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001631", + "id" : "http://purl.obolibrary.org/obo/ENVO_01000313", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] + "definition" : { + "val" : "An anthropogenic environment is an environmental system which is the product of human activity.", + "xrefs" : [ ] + } }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "anthropogenic environment" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000303", + "id" : "http://purl.obolibrary.org/obo/PATO_0001905", "meta" : { "definition" : { - "val" : "A speed which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "fast speed", - "xrefs" : [ ] - }, { "pred" : "hasExactSynonym", - "val" : "high speed", + "val" : "having physical part", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000304" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased speed" + "lbl" : "has normal numbers of parts of type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001632", + "id" : "http://purl.obolibrary.org/obo/PATO_0001906", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front of an organism relative to another entity.", - "xrefs" : [ "PATOC:nw" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's participation in movement.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "preceding", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "ventral_to", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "anterior to" + "lbl" : "movement quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000786", + "id" : "http://purl.obolibrary.org/obo/PATO_0001903", "meta" : { + "definition" : { + "val" : "A directional quality inhering in a bearer by virtue of the bearer's having two directions.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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}, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete regeneration value" + "lbl" : "mislocalised ventrally" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001644", + "id" : "http://purl.obolibrary.org/obo/PATO_0001923", "meta" : { + "definition" : { + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the side of an organism.", + "xrefs" : [ "PATOC:mb" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001598" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "mislocalised laterally" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000795", + "id" : "http://purl.obolibrary.org/obo/PATO_0001924", "meta" : { + "definition" : { + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the middle of an organism.", + "xrefs" : [ "PATOC:mb" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete healing value" + "lbl" : "mislocalised medially" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001645", + "id" : "http://purl.obolibrary.org/obo/PATO_0001921", "meta" : { "definition" : { - "val" : "A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary into the surface or boundary of another entity.", - "xrefs" : [ "PATOC:nc" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the front of an organism.", + "xrefs" : [ "PATOC:mb" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "protruding into" + "lbl" : "mislocalised anteriorly" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000311", + "id" : "http://purl.obolibrary.org/obo/PATO_0001922", + "meta" : { + "definition" : { + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the rear of an organism.", + "xrefs" : [ "PATOC:mb" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "mislocalised posteriorly" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001097", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -19273,22 +19868,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete color hue value" + "lbl" : "obsolete relative force value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000798", + "id" : "http://purl.obolibrary.org/obo/PATO_0001098", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete defecation value" + "lbl" : "obsolete absolute force" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000314", + "id" : "http://purl.obolibrary.org/obo/PATO_0001095", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -19299,24 +19894,35 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete flourescence value" + "lbl" : "obsolete force value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001642", + "id" : "http://purl.obolibrary.org/obo/PATO_0001096", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001624" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute force value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001099", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete relative force" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000313", + "id" : "http://purl.obolibrary.org/obo/PATO_0001090", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -19327,24 +19933,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete color saturation value" + "lbl" : "obsolete absolute elasticity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001643", + "id" : "http://purl.obolibrary.org/obo/PATO_0001093", "meta" : { - "definition" : { - "val" : "A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "stubby" + "lbl" : "obsolete relative flux value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000797", + "id" : "http://purl.obolibrary.org/obo/PATO_0001094", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -19355,9 +19959,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete urination value" + "lbl" : "obsolete absolute flux value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000316", + "id" : "http://purl.obolibrary.org/obo/PATO_0001091", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -19368,233 +19972,233 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative color value" + "lbl" : "obsolete relative elasticity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001648", + "id" : "http://purl.obolibrary.org/obo/PATO_0001092", "meta" : { - "definition" : { - "val" : "An 1-D extent quality which is equal to the length of the closed curve of a circle.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "circumference" + "lbl" : "obsolete flux value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000799", + "id" : "http://purl.obolibrary.org/obo/PATO_0050000", "meta" : { + "definition" : { + "val" : "The number of repeated events per unit time, occurring in a repeating series. (e.g. the number of heart beats occurring over 1 minute)", + "xrefs" : [ "https://orcid.org/0000-0002-9943-9018" ] + }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete muscle elevation value" + "lbl" : "rate of occurence" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000315", + "id" : "http://purl.obolibrary.org/obo/PATO_0050001", "meta" : { + "definition" : { + "val" : "The rate of output of a continuous process. Example include: growth rate, cell migration rate, enzyme reaction rate.", + "xrefs" : [ "https://orcid.org/0000-0002-9943-9018" ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete color pattern value" + "lbl" : "rate of continuous process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001649", + "id" : "http://purl.obolibrary.org/obo/PATO_0001059", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the side.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "curved lateral" + "lbl" : "obsolete relative efficiency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001646", + "id" : "http://purl.obolibrary.org/obo/PATO_0001053", "meta" : { "definition" : { - "val" : "A quality inhering into a bearer by virtue of the bearer's extending out above or beyond its surface or boundary and outwards in relation to the physical space occupied by another entity.", - "xrefs" : [ "PATOC:nc" ] + "val" : "An angle which is less than 180 degrees to another entity.", + "xrefs" : [ "maths.org:maths.org" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "extruding from", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "exits through", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "exposed", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "protruding out of" + "lbl" : "convex angle to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000318", + "id" : "http://purl.obolibrary.org/obo/PATO_0002384", "meta" : { "definition" : { - "val" : "A color hue with low wavelength of that portion of the visible spectrum lying between green and indigo, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 490 nanometers.", - "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] + "val" : "Presence of long chain aliphatic lipids on the surface of an organism.", + "xrefs" : [ "PATOC:lm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-07-05T03:18:21Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "blue" + "lbl" : "waxy" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000317", + "id" : "http://purl.obolibrary.org/obo/PATO_0001054", "meta" : { "definition" : { - "val" : "A color that lacks any hues as parts.", + "val" : "A convex angle that is inside two adjacent sides of a polygon.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "black" + "lbl" : "internal angle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001647", + "id" : "http://purl.obolibrary.org/obo/PATO_0002385", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines, usually parallel, with at least one salient angle on the margin", + "xrefs" : [ "FNA:FNA" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000052" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-07-05T05:17:07Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - } ] - }, - "type" : "CLASS" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000790", - "meta" : { - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete heart rate value" + "lbl" : "striate-angular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001640", + "id" : "http://purl.obolibrary.org/obo/PATO_0002382", "meta" : { + "definition" : { + "val" : "A waxiness which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001511" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-07-05T03:18:03Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002383" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "increased waxiness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000792", + "id" : "http://purl.obolibrary.org/obo/PATO_0001051", "meta" : { + "definition" : { + "val" : "An angle which is less than 90 degrees.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete repair function value" + "lbl" : "acute angle to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001641", + "id" : "http://purl.obolibrary.org/obo/PATO_0002383", "meta" : { + "definition" : { + "val" : "A waxiness which is relatively low.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-07-05T03:18:14Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001624" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002382" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000791", - "meta" : { - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete immune function value" + "lbl" : "decreased waxiness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000794", + "id" : "http://purl.obolibrary.org/obo/PATO_0001052", "meta" : { + "definition" : { + "val" : "An angle which is between 90 degrees and 180 degrees to another entity.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete immunodeficient value" + "lbl" : "obtuse angle to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000310", + "id" : "http://purl.obolibrary.org/obo/PATO_0002388", "meta" : { + "definition" : { + "val" : "Being supported by a peduncle or stalk.", + "xrefs" : [ "PATOC:GV" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-10-12T01:10:41Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete color value" + "lbl" : "pedunculate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000793", + "id" : "http://purl.obolibrary.org/obo/PATO_0001057", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -19605,9 +20209,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete immubocompetent value" + "lbl" : "obsolete relative acceleration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000727", + "id" : "http://purl.obolibrary.org/obo/PATO_0001058", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -19618,74 +20222,96 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete behavioral function value" + "lbl" : "obsolete absolute acceleration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000726", + "id" : "http://purl.obolibrary.org/obo/PATO_0002389", "meta" : { + "definition" : { + "val" : "Growing horizontal to the ground without setting roots.", + "xrefs" : [ "PATO:PG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - 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"pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-07-23T03:13:41Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete metabolic function value" + "lbl" : "anvil" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000721", + "id" : "http://purl.obolibrary.org/obo/PATO_0001055", "meta" : { + "definition" : { + "val" : "An angular placement quality inhering in a bearer by virtue of the bearer's placement at an angle that is greater than 180 degrees but less than 360 degrees to another entity.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-11-20T04:13:32Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete function value" + "lbl" : "mislocalized abaxially" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000724", + "id" : "http://purl.obolibrary.org/obo/PATO_0001064", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -19753,128 +20411,117 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete low yield" + "lbl" : "obsolete absolute flux" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0042325", + "id" : "http://purl.obolibrary.org/obo/PATO_0002396", "meta" : { "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule.", - "xrefs" : [ "GOC:jl" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the axis of an organism.", + "xrefs" : [ "PATOC:EH" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - 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"id" : "http://purl.obolibrary.org/obo/PATO_0000738", + "id" : "http://purl.obolibrary.org/obo/PATO_0001062", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete enzyme function value" + "lbl" : "obsolete absolute elasticity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000737", + "id" : "http://purl.obolibrary.org/obo/PATO_0001063", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete functional value" + "lbl" : "obsolete relative flux" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000739", + "id" : "http://purl.obolibrary.org/obo/PATO_0002394", "meta" : { + "definition" : { + "val" : "A tolerance quality inhering in a bearer by virtue of the bearer's decreased ability to endure a stimulus.", + "xrefs" : [ "PATOC:LC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-11-15T05:33:05Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002393" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute enzyme function value" + "lbl" : "decreased tolerance to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000730", + "id" : "http://purl.obolibrary.org/obo/PATO_0001068", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -19885,22 +20532,30 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative function value" + "lbl" : "obsolete relative strain" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000732", + "id" : "http://purl.obolibrary.org/obo/PATO_0002399", "meta" : { + "definition" : { + "val" : "A rotation quality inhering in a bearer by virtue of being rotated towards the front and the middle of an organism.", + "xrefs" : [ "PATOC:JI" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-07T05:41:01Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete body tone value" + "lbl" : "anteromedially rotated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000731", + "id" : "http://purl.obolibrary.org/obo/PATO_0001069", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -19911,91 +20566,71 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete body position value" + "lbl" : "obsolete relative density" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000734", + "id" : "http://purl.obolibrary.org/obo/PATO_0001066", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete abdominal tone value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000733", - "meta" : { - "basicPropertyValues" : [ { + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - 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Note that specific transcription factors may be annotated to this term, but core/general transcription machinery such as RNA polymerase should not." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0023033" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-07T05:32:18Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "signal transduction" + "lbl" : "subcircular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000736", + "id" : "http://purl.obolibrary.org/obo/PATO_0002398", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-12-07T05:34:16Z" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete dysfunctional value" + "lbl" : "obsolete " }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000735", + "id" : "http://purl.obolibrary.org/obo/PATO_0001067", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -20006,22 +20641,30 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete limb tone value" + "lbl" : "obsolete absolute strain" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000749", + "id" : "http://purl.obolibrary.org/obo/PATO_0002391", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having three rays or radiating branches.", + "xrefs" : [ "merriam-webster:merriam-webster" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-11-15T05:19:32Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete gait value" + "lbl" : "triradiate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000748", + "id" : "http://purl.obolibrary.org/obo/PATO_0001060", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -20032,35 +20675,64 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete discrimination value" + "lbl" : "obsolete absolute efficiency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000741", + "id" : "http://purl.obolibrary.org/obo/PATO_0002392", "meta" : { + "definition" : { + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located on a sloping line joining two nonconsecutive points of an entity relative to another entity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-11-15T05:21:51Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + } ] + }, + "type" : "CLASS", + "lbl" : "diagonal to" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001061", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete high enzyme function value" + "lbl" : "obsolete relative elasticity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000740", + "id" : "http://purl.obolibrary.org/obo/PATO_0002390", "meta" : { + "definition" : { + "val" : "A length quality which is equal to the length of any straight line segment that passes from the center of a circle to any endpoint on the circular boundary. The radius is half of the diameter.", + "xrefs" : [ "PATO:DS" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-11-15T05:17:15Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative enzyme function value" + "lbl" : "radius" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000743", + "id" : "http://purl.obolibrary.org/obo/PATO_0001075", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -20071,9 +20743,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete arousal value" + "lbl" : "obsolete absolute momentum" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000742", + "id" : "http://purl.obolibrary.org/obo/PATO_0001076", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -20084,9 +20756,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete low enzyme function value" + "lbl" : "obsolete relative momentum" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000745", + "id" : "http://purl.obolibrary.org/obo/PATO_0001073", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -20097,9 +20769,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete behavioral quality value" + "lbl" : "obsolete relative impulse" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000744", + "id" : "http://purl.obolibrary.org/obo/PATO_0001074", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -20110,9 +20782,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete balance value" + "lbl" : "obsolete absolute impulse" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000747", + "id" : "http://purl.obolibrary.org/obo/PATO_0001079", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -20123,153 +20795,152 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete coordination value" + "lbl" : "obsolete absolute work" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000746", + "id" : "http://purl.obolibrary.org/obo/PATO_0001077", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete consumption value" + "lbl" : "obsolete absolute pressure" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001608", + "id" : "http://purl.obolibrary.org/obo/PATO_0001078", "meta" : { - "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being marked by, consisting of, or diversified with patches.", - "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "patchy" + "lbl" : "obsolete relative pressure" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000759", + "id" : "http://purl.obolibrary.org/obo/PATO_0001071", "meta" : { - "definition" : { - "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting paralytic behaviour when subjected to mechanical shock.", - "xrefs" : [ "PATOC:flybase" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "bang sensitive" + "lbl" : "obsolete relative energy" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001609", + "id" : "http://purl.obolibrary.org/obo/PATO_0001072", "meta" : { - "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being scattered; spread irregularly, and at a distance from each other.", - "xrefs" : [ "biology.lsu:biology.lsu" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sparse" + "lbl" : "obsolete absolute energy" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001606", + "id" : "http://purl.obolibrary.org/obo/PATO_0001070", "meta" : { - "definition" : { - "val" : "A coating which is oily and slippery.", - "xrefs" : [ ".answers.com:.answers.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "greasy" + "lbl" : "obsolete absolute density" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001607", + "id" : "http://purl.obolibrary.org/obo/PATO_0001086", "meta" : { - "definition" : { - "val" : "A tangled quality inhering in a bearer by virtue of the bearer's being not possible to unravel.", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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}, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete mating value" + "lbl" : "obsolete relative acceleration value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000751", + "id" : "http://purl.obolibrary.org/obo/PATO_0001085", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute acceleration value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001088", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete locomotor activity value" + "lbl" : "obsolete absolute efficiency value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001601", + "id" : "http://purl.obolibrary.org/obo/PATO_0001089", "meta" : { - "definition" : { - "val" : "A rotation quality inhering in a bearer by virtue of being rotated towards the front of an organism.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "anteriorly rotated" + "lbl" : "obsolete elasticity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000754", + "id" : "http://purl.obolibrary.org/obo/PATO_0001082", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -20280,9 +20951,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete startle response" + "lbl" : "obsolete damage value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000753", + "id" : "http://purl.obolibrary.org/obo/PATO_0001083", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -20293,1145 +20964,1024 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete spontaneous activity value" + "lbl" : "obsolete acceleration value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001604", + "id" : "http://purl.obolibrary.org/obo/PATO_0001080", "meta" : { - "definition" : { - "val" : "A life span which is relatively low.", - "xrefs" : [ "PATO:GVG" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low life span", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001603" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "decreased life span" + "lbl" : "obsolete relative work" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000756", + "id" : "http://purl.obolibrary.org/obo/PATO_0001081", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete transfer arousal value" + "lbl" : "obsolete physical measure value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001605", + "id" : "http://purl.obolibrary.org/obo/RO_0002090", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/BFO_0000063" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "ends_at_start_of" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "meets" + } ] + }, + "type" : "PROPERTY", + "lbl" : "immediately precedes" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001017", "meta" : { - 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"id" : "http://purl.obolibrary.org/obo/PATO_0002061", + "id" : "http://purl.obolibrary.org/obo/PATO_0001039", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0002182" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete absolute ratio" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002062", + "id" : "http://purl.obolibrary.org/obo/PATO_0001037", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-06-05T09:16:46Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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"val" : "2009-09-18T02:04:48Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "movement behavioral quality" + "lbl" : "obsolete ratio" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002077", + "id" : "http://purl.obolibrary.org/obo/PATO_0002369", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being positioned with multiple entities of the same type above and below.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A viviparous organism that has given birth two or more times.", + "xrefs" : [ "wiki:http://en.wikipedia.org/wiki/Parity_(biology)" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - 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"val" : "A quality inhering in a bearer by virtue of the bearer's having an empty space or cavity within.", - "xrefs" : [ "url:http://www.merriam-webster.com/dictionary/hollow" ] + "val" : "A medium brown color with a metallic sheen, resembles the actual alloy bronze.", + "xrefs" : [ "PATO:LC" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-05-03T11:08:18Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-18T02:19:20Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "hollow" + "lbl" : "bronze" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002079", + "id" : "http://purl.obolibrary.org/obo/PATO_0001032", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" @@ -21439,683 +21989,630 @@ }, "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002072", + "id" : "http://purl.obolibrary.org/obo/PATO_0025000", "meta" : { "definition" : { - "val" : "An affinity which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be used as a safe means of hydration.", + "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "drinkability", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002071" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-18T01:30:11Z" - } ] - }, - "type" : "CLASS", - "lbl" : "decreased affinity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002073", - "meta" : { - "definition" : { - "val" : "A molecular quality that arises from the synergistic strength of bond affinities between multiple bond interactions.", - "xrefs" : [ "Wikipedia:Wikipedia" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "2015-09-01T16:16:44Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-18T01:41:44Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "pbuttigieg" } ] }, "type" : "CLASS", - "lbl" : "avidity" + "lbl" : "potability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002070", + "id" : "http://purl.obolibrary.org/obo/PATO_0002360", "meta" : { "definition" : { - "val" : "A molecular quality that arises from the molecular attraction exerted between two atoms or compounds.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A disposition that can be compared on a linear scale - that is that it can be increased or decreased.", + "xrefs" : [ "PATOC:RH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-03-16T06:31:50Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-18T01:16:16Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "affinity" + "lbl" : "tendency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002071", + "id" : "http://purl.obolibrary.org/obo/PATO_0002361", "meta" : { "definition" : { - "val" : "An affinity which is relatively high.", + "val" : "A tendency which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-18T01:29:42Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002362" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-03-16T06:31:57Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002072" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "increased affinity" + "lbl" : "increased tendency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002087", + "id" : "http://purl.obolibrary.org/obo/PATO_0001030", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being short and wide and tapered distally.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A physical quality that exists by virtue of the rate of flow of the bearer across a given surface.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-30T09:53:43Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "bullet-shaped" + "lbl" : "flux" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002088", + "id" : "http://purl.obolibrary.org/obo/PATO_0025001", "meta" : { "definition" : { - "val" : "A structure quality inhering in a bearer by virtue of the bearer's body consisting of one sac.", - "xrefs" : [ "mondofacto:mondofacto" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration.", + "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "undrinkable", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0025002" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "pbuttigieg" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-01T03:00:20Z" + "val" : "2015-09-01T16:18:57Z" } ] }, "type" : "CLASS", - "lbl" : "monocystic" + "lbl" : "non-potable" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002085", + "id" : "http://purl.obolibrary.org/obo/PATO_0002366", "meta" : { "definition" : { - "val" : "The period before death of the organism.", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "Male quality of having complete, unaltered reproductive organs.", + "xrefs" : [ "PATOC:MF" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-25T11:31:13Z" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Terms were requested by the OBI consortium but it was later decided that the term was not reflecting a quality rather what it might be refered to as a \"conferred quality\"." + "val" : "2012-05-03T11:19:06Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete pre-mortem" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002086", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000694" - } ] - }, - "type" : "CLASS" + "lbl" : "intact male" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002089", + "id" : "http://purl.obolibrary.org/obo/PATO_0001035", "meta" : { "definition" : { - "val" : "A structure quality inhering in a bearer by virtue of the bearer's body containing more than one cyst - formations of an epithelium bounded cavity not associated with neoplasia.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "multicystic", + "val" : "force amplitude", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-01T03:02:54Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "polycystic" + "lbl" : "force" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002080", + "id" : "http://purl.obolibrary.org/obo/PATO_0025002", "meta" : { "definition" : { - "val" : "A broken quality inhering in a bearer by virtue of the bearer's being seperated into two contiguous wholes.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration.", + "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "drinkable", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2015-09-01T16:19:02Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0025001" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-21T10:18:11Z" + "val" : "pbuttigieg" } ] }, "type" : "CLASS", - "lbl" : "broken into two pieces" + "lbl" : "potable" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002083", + "id" : "http://purl.obolibrary.org/obo/PATO_0002367", "meta" : { "definition" : { - "val" : "Having extra or fewer parts.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Male quality of being incapable to reproduce because of functional loss of the testicles from surgical removal or chemical means.", + "xrefs" : [ "PATOC:MF" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-21T10:41:58Z" + "val" : "2012-05-03T11:22:29Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "altered number of" + "lbl" : "castrated male" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002084", + "id" : "http://purl.obolibrary.org/obo/PATO_0001036", "meta" : { - "definition" : { - "val" : "The period after death of the organism.", - "xrefs" : [ "thefreedictionary:thefreedictionary" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-25T11:29:21Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Terms were requested by the OBI consortium but it was later decided that the term was not reflecting a quality rather what it might be refered to as a \"conferred quality\"." } ] }, "type" : "CLASS", - "lbl" : "obsolete post-mortem" + "lbl" : "obsolete relative life span" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002081", + "id" : "http://purl.obolibrary.org/obo/PATO_0002364", "meta" : { "definition" : { - "val" : "A broken quality inhering in a bearer by virtue of the bearer's being broken into multiple contiguous wholes.", - "xrefs" : [ "PATOC:GJM" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-21T10:18:51Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001154" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-04-18T06:31:29Z" } ] }, "type" : "CLASS", - "lbl" : "shattered" + "lbl" : "shortened" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002082", + "id" : "http://purl.obolibrary.org/obo/PATO_0001033", "meta" : { - "definition" : { - "val" : "A broken quality inhering in a bearer by virtue of the bearer's being still one contiguous whole but structurally damaged such that in danger of become two or more.", - "xrefs" : [ "PATOC:CJM" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-09-21T10:20:06Z" } ] }, "type" : "CLASS", - "lbl" : "partially broken" + "lbl" : "obsolete stiffness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002098", + "id" : "http://purl.obolibrary.org/obo/PATO_0002365", "meta" : { "definition" : { - "val" : "A disposition inhering in a tumour by virtue of the bearer's disposition to spread and invade distant tissues.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Female quality of having complete, unaltered reproductive organs", + "xrefs" : [ "PATOC:MF" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T12:54:48Z" + "val" : "2012-05-03T11:18:41Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "neoplastic, metastatic" + "lbl" : "intact female" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002099", + "id" : "http://purl.obolibrary.org/obo/PATO_0001034", "meta" : { "definition" : { - "val" : "A cellular quality inhering in a bearer by virtue of its stable specialization to a particular cell type.", + "val" : "A physical quality inhering in a bearer by virtue of the relative change in the bearer's length or the bearer's volume when being stretched or squashed.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-10-05T12:58:54Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002100" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"val" : "An osmolality which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Having a shape that resembles a many-lobed \"berry,\" such as a raspberry.", + "xrefs" : [ "wikipedia:https://en.wikipedia.org/wiki/Acinus" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low osmolality", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "gkoutos" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002029" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-01-27T10:55:33Z" + "val" : "2012-07-05T02:58:05Z" + } ] + }, + "type" : "CLASS", + "lbl" : "acinus" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001047", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased osmolality" + "lbl" : "obsolete absolute resistance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001174", + "id" : "http://purl.obolibrary.org/obo/PATO_0001044", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -22126,47 +22623,59 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete urine composition" + "lbl" : "obsolete absolute power" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002021", + "id" : "http://purl.obolibrary.org/obo/PATO_0002375", "meta" : { "definition" : { - "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a cone (a 3-D shape with a round cross section that tapers).", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Cone_(geometry)" ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a trumpet.", + "xrefs" : [ "PATOC:DS" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "xrefs" : [ { - "val" : "Image:http://upload.wikimedia.org/wikipedia/commons/d/d2/Cone_3d.png" - } ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "cone-shaped", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-07-05T02:45:17Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "conical" + "lbl" : "trumpet-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002022", + "id" : "http://purl.obolibrary.org/obo/PATO_0002376", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a minute projection (villus).", - "xrefs" : [ "PATOC:PEM" ] + "val" : "A structure quality inhering in a bearer by virtue of the bearer's being filled with air.", + "xrefs" : [ "PATOC:CVS" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "air-filled", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-07-05T02:55:10Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002377" } ] }, "type" : "CLASS", - "lbl" : "villiform" + "lbl" : "inflated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001175", + "id" : "http://purl.obolibrary.org/obo/PATO_0001045", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -22177,393 +22686,415 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete urine composition" + "lbl" : "obsolete relative power" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001172", + "id" : "http://purl.obolibrary.org/obo/PATO_0002370", "meta" : { "definition" : { - "val" : "An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way.", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "The number of time that a viviparous organism has given birth.", + "xrefs" : [ "wiki:http://en.wikipedia.org/wiki/Parity_(biology)" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001171" - } ] - }, - "type" : "CLASS", - "lbl" : "inelastic" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001173", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-05-03T11:27:56Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete urine glucose composition value" + "lbl" : "parity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002020", + "id" : "http://purl.obolibrary.org/obo/PATO_0002304", "meta" : { "definition" : { - "val" : "Pink color having high brightness and low saturation.", + "val" : "A quality of a process that has a value that is increased compared to normal or average.", "xrefs" : [ "PATOC:GVG" ] }, "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-16T06:53:08Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002302" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "pale pink" + "lbl" : "increased process quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002025", + "id" : "http://purl.obolibrary.org/obo/PATO_0002305", "meta" : { "definition" : { - "val" : "A convex angle that is formed by one side of a polygon and a line extended from an adjacent side.", - "xrefs" : [ "http://en.wikipedia.org/wiki/Internal_angle" ] + "val" : "A quality of an object that has a value that is increased compared to normal or average.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002303" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-16T06:54:01Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "external angle" + "lbl" : "increased object quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001178", + "id" : "http://purl.obolibrary.org/obo/PATO_0002302", "meta" : { "definition" : { - "val" : "A resistance quality inhering in a bearer by virtue of the bearer's resistance to a stimulus.", + "val" : "A quality of a process that has a value that is decreased compared to normal or average.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "resistant", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002304" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-16T06:50:59Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "resistant to" + "lbl" : "decreased process quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002026", + "id" : "http://purl.obolibrary.org/obo/PATO_0002303", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's not increasing over time.", + "val" : "A quality of an object that has a value that is decreased compared to normal or average.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001818" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2008-12-18T12:49:19Z" + "val" : "2011-06-16T06:51:54Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "non-progressive" + "lbl" : "decreased object quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001179", + "id" : "http://purl.obolibrary.org/obo/PATO_0002308", "meta" : { + "definition" : { + "val" : "A triangular quality inhering in a bearer by virtue of the bearer's having all sides of unequal length.", + "xrefs" : [ "PATOC:JB" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-27T11:24:24Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete immune" + "lbl" : "scalene triangular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001176", + "id" : "http://purl.obolibrary.org/obo/PATO_0002309", "meta" : { + "definition" : { + "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a by virtue of the bearer's exhibiting a consistently sized and approximately round cross-section along its length, which is many times larger than its diameter.", + "xrefs" : [ "PATOC:DC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that a fiber shaped object may take any circuitous or straight path through space (think of a length of string or rope)." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-09-09T04:50:10Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete deaf" + "lbl" : "fiber shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002023", + "id" : "http://purl.obolibrary.org/obo/PATO_0002306", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an apical-basal axis.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A triangular quality inhering in a bearer by virtue of the bearer's having all sides of the same length.", + "xrefs" : [ "PATOC:JB" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-27T11:22:50Z" } ] }, "type" : "CLASS", - "lbl" : "apical-basal polarity" + "lbl" : "equilateral triangular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002024", + "id" : "http://purl.obolibrary.org/obo/PATO_0002307", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along the anterior-posterior axis.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A triangular quality inhering in a bearer by virtue of the bearer's having two sides have the same length.", + "xrefs" : [ "PATOC:JB" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "rostral-caudal polarity", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "superior-caudal polarity (human torso)", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-27T11:23:52Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "anterior-posterior polarity" + "lbl" : "isosceles triangular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001177", + "id" : "http://purl.obolibrary.org/obo/PATO_0002300", "meta" : { + "definition" : { + "val" : "A quality that has a value that is increased compared to normal or average.", + "xrefs" : [ "PATOC:GVG" ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002301" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-16T06:39:43Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete blind" + "lbl" : "increased quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001170", + "id" : "http://purl.obolibrary.org/obo/PATO_0002301", "meta" : { + "definition" : { + "val" : "A quality that has a value that is decreased compared to normal or average.", + "xrefs" : [ "PATOC:GVG" ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-16T06:40:15Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002300" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete numerical value" + "lbl" : "decreased quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001171", + "id" : "http://purl.obolibrary.org/obo/PATO_0002315", "meta" : { "definition" : { - "val" : "An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way.", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's resembling the end of a brush with a multitude of bristles.", + "xrefs" : [ "PATOC:BF" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-03T03:59:59Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001172" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "elastic" + "lbl" : "brush-like shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002038", + "id" : "http://purl.obolibrary.org/obo/PATO_0002316", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer whose structure which does not deteriorate.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Being separate or discrete from other skeletal elements.", + "xrefs" : [ "PATOC:WD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "not degenerate", + "pred" : "hasRelatedSynonym", + "val" : "free", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000639" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-02-03T11:14:54Z" + "val" : "2011-10-03T04:17:08Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "non-degenerate" + "lbl" : "autogenous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002039", + "id" : "http://purl.obolibrary.org/obo/PATO_0002313", "meta" : { "definition" : { - "val" : "A concave quality inhering in a bearer by virtue of the bearer's curving inward on both sides or surfaces.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Having or resembling the shape of a telescope.", + "xrefs" : [ "PATOC:BF" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002040" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-03T03:49:26Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "biconcave" + "lbl" : "telescopic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001185", + "id" : "http://purl.obolibrary.org/obo/PATO_0002314", "meta" : { "definition" : { - "val" : "A maturity quality inhering in a bearer by virtue of the bearer's indirect development, undergoing metamorphosis.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Larval" ] + "val" : "Having the nature or characteristic of, a ligament; composed of the tissue proper to ligaments.", + "xrefs" : [ "PATOC:BF" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-03T03:57:39Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "larval" + "lbl" : "ligamentous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002032", + "id" : "http://purl.obolibrary.org/obo/PATO_0002319", "meta" : { "definition" : { - "val" : "A reflectivity quality inhering in light by virtue of the bearer's scattering occurring at small angle to the incident beam.", - "xrefs" : [ "PATOC:mc" ] + "val" : "A shape with properties between those of a square and those of a circle.", + "xrefs" : [ "wikipedia:Squircle" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-12T12:47:48Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "George Gkoutos" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-01-27T11:38:49Z" - } ] - }, - "type" : "CLASS", - "lbl" : "forward scatter" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001186", - "meta" : { - "definition" : { - "val" : "A maturity quality inhering in a bearer by virtue of the bearer's being at the age immediately before puberty.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "prepubescent" + "lbl" : "squircle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002033", + "id" : "http://purl.obolibrary.org/obo/PATO_0002317", "meta" : { "definition" : { - "val" : "A reflective quality that is the light scattering occurring at wide angle (around 90 degrees) to the incident beam.", - "xrefs" : [ "PATOC:mc" ] + "val" : "A convex quadrilateral is a parallelogram if and only if any one of the following statements are true:\n1. Each diagonal divides the quadrilateral into two congruent triangles with the same orientation.\n2. The opposite sides are congruent in pairs.\n3. The diagonals bisect each other.\n4. The opposite angles are congruent in pairs.\n5. The sum of the squares of the sides equals the sum of the squares of the diagonals. (This is the parallelogram law)\n6.It possesses rotational symmetry.\n7.One pair of opposite sides are parallel and congruent.\n8.Two pairs of adjacent angles are supplementary.", + "xrefs" : [ "wikipedia:Parallelogram" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-01-27T11:39:36Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-12T12:33:07Z" } ] }, "type" : "CLASS", - "lbl" : "side scatter" + "lbl" : "parallelogram" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002030", + "id" : "http://purl.obolibrary.org/obo/PATO_0002318", "meta" : { "definition" : { - "val" : "A molecular quality that inheres in a molecular entity by virtue of whether the bearer exhibits the ability of a probe to react precisely with a specific target molecule.", - "xrefs" : [ "PATOC:mc" ] + "val" : "A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt", + "xrefs" : [ "wiktionary:superellipse" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "Lamé curve", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-01-27T11:13:52Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - } ] - }, - "type" : "CLASS", - "lbl" : "specificity to" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0001900", - "meta" : { - "definition" : { - "val" : "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.", - "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://xmlns.com/foaf/0.1/page", - "val" : "https://github.com/oborel/obo-relations/wiki/ROAndTime" - } ] - }, - "type" : "PROPERTY", - "lbl" : "temporal interpretation" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001183", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "George Gkoutos" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-12T12:45:16Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute response value" + "lbl" : "superelliptic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002031", + "id" : "http://purl.obolibrary.org/obo/PATO_0002311", "meta" : { "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved or tilted such that the tip points upwards.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "Having a fringe or border of hairlike or fingerlike projections.", + "xrefs" : [ "PATO:WS" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -22571,291 +23102,354 @@ "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-01-27T11:23:45Z" + "val" : "2011-09-22T03:52:11Z" } ] }, "type" : "CLASS", - "lbl" : "upturned" + "lbl" : "fimbriated" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0001901", + "id" : "http://purl.obolibrary.org/obo/PATO_0002312", "meta" : { "definition" : { - "val" : "\n\n## Elucidation\n\nThis is used when the statement/axiom is assumed to hold true 'eternally'\n\n## How to interpret (informal)\n\nFirst the \"atemporal\" FOL is derived from the OWL using the standard\ninterpretation. This axiom is temporalized by embedding the axiom\nwithin a for-all-times quantified sentence. The t argument is added to\nall instantiation predicates and predicates that use this relation.\n\n## Example\n\n Class: nucleus\n SubClassOf: part_of some cell\n\n forall t :\n forall n :\n instance_of(n,Nucleus,t)\n implies\n exists c :\n instance_of(c,Cell,t)\n part_of(n,c,t)\n\n## Notes\n\nThis interpretation is *not* the same as an at-all-times relation\n\n", - "xrefs" : [ ] - } - }, - "type" : "INDIVIDUAL", - "lbl" : "axiom holds for all times" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001184", - "meta" : { + "val" : "Consisting of segments or similar parts arranged in a longitudinal series.", + "xrefs" : [ "OED:" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-03T03:42:23Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete maturity value" + "lbl" : "segmented" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001189", + "id" : "http://purl.obolibrary.org/obo/PATO_0002310", "meta" : { "definition" : { - "val" : "A maturity quality inhering in a bearer by virtue of the bearer's being between the onset of puberty and maturity.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's being strong, thick or sturdy.", + "xrefs" : [ "PATOC:BF" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-09-20T06:23:31Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "adolescent" + "lbl" : "robust" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002036", + "id" : "http://purl.obolibrary.org/obo/PATO_0002326", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located towards the central axis of the organism or an extremity.", + "val" : "An orientation inhering in a bearer by virtue of the bearer's placement at an angle.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-02-01T02:06:20Z" + "val" : "2011-11-23T12:06:09Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "axial to" + "lbl" : "angle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002037", + "id" : "http://purl.obolibrary.org/obo/PATO_0002327", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer exhibiting deterioration of its structure.", + "val" : "An angle which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-11-23T12:06:38Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-02-03T11:13:19Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002328" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "degeneration" + "lbl" : "increased angle to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002034", + "id" : "http://purl.obolibrary.org/obo/PATO_0002324", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being unseparated into parts or divisions.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The temporal relation between the end of the process with respect to a reference process.", + "xrefs" : [ "PATOC:LC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "unseparated", - "xrefs" : [ ] + "val" : "extent", + "xrefs" : [ "GOC:CJM" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "completeness", + "xrefs" : [ "GOC:CJM" ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-01-27T11:53:46Z" + "val" : "2011-11-23T11:46:00Z" } ] }, "type" : "CLASS", - "lbl" : "undivided" + "lbl" : "offset quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001187", + "id" : "http://purl.obolibrary.org/obo/PATO_0002325", "meta" : { "definition" : { - "val" : "A maturity quality inhering in a insect by virtue of the bearer's being in the chrysalis (cocoon) or post larval stage.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "The temporal relation between the start of the process with respect to a reference process.", + "xrefs" : [ "PATOC:LC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "initiation", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-11-23T11:47:34Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "pupal" + "lbl" : "onset quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002035", + "id" : "http://purl.obolibrary.org/obo/PATO_0002328", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being on the same side in relation to another structure.", + "val" : "An angle which is relatively low.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "ipsilateral", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-02-01T02:04:11Z" + "val" : "2011-11-23T12:06:54Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002327" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "ipsilateral to" + "lbl" : "decreased angle to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001188", + "id" : "http://purl.obolibrary.org/obo/PATO_0002329", "meta" : { "definition" : { - "val" : "A maturity quality inhering in a bearer by virtue of the bearer's being in an inactive stage in the development of some insects, between the larval and the pupal stages.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's exhibiting a upward bending of its leaves or other plant parts.", + "xrefs" : [ "PATOC:DS" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-01-31T11:40:23Z" } ] }, "type" : "CLASS", - "lbl" : "prepupal" + "lbl" : "hyponastic" }, { - "id" : "http://purl.obolibrary.org/obo/pato#is_unit_of", + "id" : "http://purl.obolibrary.org/obo/PATO_0002322", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002321" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "pato.ontology" + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-12T12:51:19Z" } ] }, - "type" : "PROPERTY", - "lbl" : "is_unit_of" + "type" : "CLASS", + "lbl" : "hyperelliptic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001181", + "id" : "http://purl.obolibrary.org/obo/PATO_0002323", "meta" : { + "definition" : { + "val" : "A temporal distribution pattern of process occurrences within a regulation/reference process.", + "xrefs" : [ "PATOC:LC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-11-22T01:12:28Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute response" + "lbl" : "temporal distribution quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001182", + "id" : "http://purl.obolibrary.org/obo/PATO_0002320", "meta" : { + "definition" : { + "val" : "A superelptic shape inhering in a bearer by virtue of the bearer's shape resembling a diamond.", + "xrefs" : [ "PATO:WC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-10-12T12:49:06Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001192" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-01-31T02:32:14Z" } ] }, "type" : "CLASS", - "lbl" : "hyporesponsive to" + "lbl" : "tholiform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001195", + "id" : "http://purl.obolibrary.org/obo/PATO_0001004", "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located more centrally than another entity.", - "xrefs" : [ "PATOC:nw" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - 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"lbl" : "hyperresponsive to" + "lbl" : "obsolete alternation value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002040", + "id" : "http://purl.obolibrary.org/obo/PATO_0002334", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being convex on both sides or surface.", - "xrefs" : [ "thefreedictionary:http://www.thefreedictionary.com/biconvexity" ] + "val" : "A adhesivity which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "xrefs" : [ { - "val" : "Image:http://www.thefreedictionary.com/_/viewer.aspx?path=hm&name=A4bicovx" - } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-01-31T12:42:22Z" + }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002039" + "val" : "http://purl.obolibrary.org/obo/PATO_0002333" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - 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"val" : "A maturity quality inhering in a bearer by virtue the bearer's being not fully grown or developed.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "resinous", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2012-01-31T12:28:16Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002332" } ] }, "type" : "CLASS", - 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"xrefs" : [ "PATOC:msp" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "laterally flattened", - "xrefs" : [ ] - }, { "pred" : "hasRelatedSynonym", - "val" : "transversely flattened", + "val" : "non-resinous", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002331" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2009-03-26T03:03:37Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "2012-01-31T12:28:57Z" } ] }, "type" : "CLASS", - "lbl" : "laterally compressed" + "lbl" : "non-adhesive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002055", + "id" : "http://purl.obolibrary.org/obo/PATO_0001001", "meta" : { - "definition" : { - "val" : "A fragility which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute alternation" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000565", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - 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"lbl" : "increased occurrence" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002469", - "meta" : { - "definition" : { - "val" : "Structural quality inhereing in a bearer in which a joint has apposed bony surfaces united by fibrous tissue, permitting no movement; found only between bones.", - "xrefs" : [ "PATOC:WD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T11:55:50Z" - } ] - }, - "type" : "CLASS", - "lbl" : "sutured to" + "lbl" : "decreased height" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001138", + "id" : "http://purl.obolibrary.org/obo/PATO_0000568", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -23477,69 +23957,98 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete ig m concentration" + "lbl" : "obsolete relative height value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000289", + "id" : "http://purl.obolibrary.org/obo/PATO_0001899", "meta" : { + "definition" : { + "val" : "A circumference which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001898" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete respiratory rate" + "lbl" : "decreased circumference" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001139", + "id" : "http://purl.obolibrary.org/obo/RO_0002131", "meta" : { + "definition" : { + "val" : "A overlaps B if they share some part in common.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "xrefs" : [ { + "val" : "RO:0002131" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "BFO_0000051 some (BFO_0000050 some ?Y)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "overlaps" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" } ] }, - "type" : "CLASS", - "lbl" : "obsolete urine glucose composition" + "type" : "PROPERTY", + "lbl" : "overlaps" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001136", + "id" : "http://purl.obolibrary.org/obo/PATO_0001890", "meta" : { + "definition" : { + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being divided into three branches.", + "xrefs" : [ "InfoVisual:InfoVisual" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "trifurcate", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete ig e concentration" + "lbl" : "tripartite" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002467", + "id" : "http://purl.obolibrary.org/obo/PATO_0001893", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer resembling a thin narrow strip.", - "xrefs" : [ "PATOC:WD" ] + "val" : "An odor quality of having increased odor.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T11:47:11Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001892" } ] }, "type" : "CLASS", - "lbl" : "lathlike" + "lbl" : "increased odor" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001137", + "id" : "http://purl.obolibrary.org/obo/PATO_0000561", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -23550,64 +24059,69 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete ig g concentration" + "lbl" : "obsolete length value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002468", + "id" : "http://purl.obolibrary.org/obo/PATO_0001894", "meta" : { "definition" : { - "val" : "A structure quality inhering in a bearer by virtue of the bearer's being capable of swelling or stretching.", - "xrefs" : [ "PATOC:WD" ] + "val" : "An organismal quality inhering in a bearer by virtue of the bearer's physical expression of sexual characteristics.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T11:48:26Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "distensible" + "lbl" : "phenotypic sex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002461", + "id" : "http://purl.obolibrary.org/obo/PATO_0000560", "meta" : { - "definition" : { - "val" : "To bend or hang downwards due to loss of water", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-04-09T06:06:14Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "wilty" + "lbl" : "obsolete height value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001130", + "id" : "http://purl.obolibrary.org/obo/PATO_0001891", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "definition" : { + "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; egg-shaped.", + "xrefs" : [ "PATOC:mc" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "eccentric", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "oval", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "egg-shaped", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "ovoid", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete ratio value" + "lbl" : "ovate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000282", + "id" : "http://purl.obolibrary.org/obo/PATO_0000563", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -23618,43 +24132,40 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete f1 fertility" + "lbl" : "obsolete relative size value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002462", + "id" : "http://purl.obolibrary.org/obo/PATO_0001892", "meta" : { "definition" : { - "val" : "A composition quality inhering in an bearer by virtue of the bearer's consisting of collagen.", - "xrefs" : [ "PATOC:WD" ] + "val" : "An odor quality of having decreased odor.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T11:34:15Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001893" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "collagenous" + "lbl" : "decreased odor" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000281", + "id" : "http://purl.obolibrary.org/obo/PATO_0000562", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete cytoplasmic sterility" + "lbl" : "obsolete mass value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001131", + "id" : "http://purl.obolibrary.org/obo/PATO_0000576", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -23665,9 +24176,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute ratio value" + "lbl" : "obsolete relative mass value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000284", + "id" : "http://purl.obolibrary.org/obo/PATO_0000575", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -23678,129 +24189,116 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete germ line dependent fertility" + "lbl" : "obsolete absolute mass value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000283", + "id" : "http://purl.obolibrary.org/obo/PATO_0000578", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001563" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "obsolete f2 fertility" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002460", + "id" : "http://purl.obolibrary.org/obo/PATO_0000577", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer being smaller and contracted, expecially due to loss of moisture.", - "xrefs" : [ "PATOC:JL" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-04-09T06:05:18Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "shriveled" + "lbl" : "obsolete weight value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001134", + "id" : "http://purl.obolibrary.org/obo/go#goslim_agr", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "AGR slim" } ] }, - "type" : "CLASS", - "lbl" : "obsolete ig a concentration" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000286", + "id" : "http://purl.obolibrary.org/obo/PATO_0000579", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001562" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "obsolete cytoplasmic male sterility" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002465", + "id" : "http://purl.obolibrary.org/obo/PATO_0000570", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's resembling a prism.", - "xrefs" : [ ] + "val" : "A height which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "tent shaped", + "val" : "tall", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000569" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T11:44:03Z" } ] }, "type" : "CLASS", - "lbl" : "prism shaped" + "lbl" : "increased height" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002466", + "id" : "http://purl.obolibrary.org/obo/PO_0009011", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer resembling a keyhole.", - "xrefs" : [ "PATOC:WD" ] + "val" : "An anatomical structure that is or was part of a plant, or was derived from a part of a plant.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "estructura vegetal (Spanish, exact)", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T11:45:53Z" + "pred" : "hasExactSynonym", + "val" : "植物 構造 (Japanese, exact)", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "keyhole shaped" + "lbl" : "plant structure" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001135", + "id" : "http://purl.obolibrary.org/obo/PATO_0000572", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete ig d concentration" + "lbl" : "obsolete relative length value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000285", + "id" : "http://purl.obolibrary.org/obo/PATO_0000571", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -23811,103 +24309,173 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete soma dependent fertility" + "lbl" : "obsolete absolute length value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002463", + "id" : "http://purl.obolibrary.org/obo/PATO_0000574", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of some aspect of the bearer extending to the position of another entity.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A length quality which is relatively small.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "short", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "shortened", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "stubby", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T11:41:00Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000573" } ] }, "type" : "CLASS", - "lbl" : "extends to" + "lbl" : "decreased length" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000288", + "id" : "http://purl.obolibrary.org/obo/pato#is_magnitude_of", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "pato.ontology" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative litter size" + "type" : "PROPERTY", + "lbl" : "is_magnitude_of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001132", + "id" : "http://purl.obolibrary.org/obo/PATO_0000573", "meta" : { + "definition" : { + "val" : "A length quality which is relatively large.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "long", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000574" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative ratio value" + "lbl" : "increased length" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001133", + "id" : "http://purl.obolibrary.org/obo/IAO_0000600", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "elucidation" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Person:Barry Smith" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "person:Alan Ruttenberg" } ] }, - "type" : "CLASS", - "lbl" : "obsolete immunoglobulin concentration" + "type" : "PROPERTY", + "lbl" : "elucidation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002464", + "id" : "http://purl.obolibrary.org/obo/PATO_0000587", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of some aspect of the bearer extending past the position of another entity.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A size quality which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "reduced", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "hypoplasia", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "underdeveloped", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "tiny", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "small", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T11:42:15Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000586" } ] }, "type" : "CLASS", - "lbl" : "extends beyond" + "lbl" : "decreased size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000287", + "id" : "http://purl.obolibrary.org/obo/PATO_0000586", "meta" : { + "definition" : { + "val" : "A size quality which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "great", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "enlarged", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "expanded", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "large", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "big", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001202" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000587" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute litter size" + "lbl" : "increased size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000280", + "id" : "http://purl.obolibrary.org/obo/PATO_0000589", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -23918,43 +24486,40 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete backcross fertility" + "lbl" : "obsolete absolute thickness value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001149", + "id" : "http://purl.obolibrary.org/obo/PATO_0000588", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's being a remnant structure from earlier development or evolution.", + "xrefs" : [ "PATOC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "May be part of an animal (such as an organ or bone) that is no longer used by the species and has therefore become smaller or less developed." } ] }, "type" : "CLASS", - "lbl" : "obsolete susceptibility value" + "lbl" : "vestigial" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002478", + "id" : "http://purl.obolibrary.org/obo/PATO_0000581", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented transversely relative to the long axis of the bearer.", - "xrefs" : [ "PATOC:DS" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:29:15Z" } ] }, "type" : "CLASS", - "lbl" : "transversely striated" + "lbl" : "obsolete relative weight value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001147", + "id" : "http://purl.obolibrary.org/obo/PATO_0000580", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -23965,114 +24530,132 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute resistance value" + "lbl" : "obsolete absolute weight value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002479", + "id" : "http://purl.obolibrary.org/obo/PATO_0000583", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented obliquely relative to the long axis of the bearer.", - "xrefs" : [ "PATOC:DS" ] + "val" : "A weight which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:29:42Z" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low weight", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "light weight", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000582" } ] }, "type" : "CLASS", - "lbl" : "obliquely striated" + "lbl" : "decreased weight" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001148", + "id" : "http://purl.obolibrary.org/obo/PATO_0000582", "meta" : { + "definition" : { + "val" : "A weight which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "heavy", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "high weight", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000583" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative resistance value" + "lbl" : "increased weight" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000293", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete absolute activity value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002472", + "id" : "http://purl.obolibrary.org/obo/PATO_0000585", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position.", - "xrefs" : [ "PATOC:NV" ] + "val" : "A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ).", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "shrunken", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:05:06Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000412" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002471" + "val" : "http://purl.obolibrary.org/obo/PATO_0000584" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "decreased velocity" + "lbl" : "hypotrophic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001141", + "id" : "http://purl.obolibrary.org/obo/PATO_0000584", "meta" : { + "definition" : { + "val" : "An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ).", + "xrefs" : [ "PATOC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "hypertrophy", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000585" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete ig a concentration value" + "lbl" : "hypertrophic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002473", + "id" : "http://purl.obolibrary.org/obo/CHEBI_24431", "meta" : { "definition" : { - "val" : "A disposition inhering in a tumour by virtue of the bearer's disposition to spontaneously arise.", - "xrefs" : [ "PATOC:NV" ] + "val" : "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/chebi#3_STAR" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "chemical entity", + "xrefs" : [ "UniProt" ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:07:08Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "chebi_ontology" } ] }, "type" : "CLASS", - "lbl" : "neoplastic, spontaneous" + "lbl" : "chemical entity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001142", + "id" : "http://purl.obolibrary.org/obo/PATO_0000598", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -24083,93 +24666,124 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete ig d concentration value" + "lbl" : "obsolete relative width value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000292", + "id" : "http://purl.obolibrary.org/obo/PATO_0000597", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete mobility value" + "lbl" : "obsolete absolute width value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000295", + "id" : "http://purl.obolibrary.org/obo/PATO_0000599", "meta" : { + "definition" : { + "val" : "A width which is relatively small.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "narrow", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000600" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative activity value" + "lbl" : "decreased width" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002470", + "id" : "http://purl.obolibrary.org/obo/PATO_0000590", "meta" : { - "definition" : { - "val" : "A morphological quality between two bearers inhering that one bearer is subject to change the nature, function, or condition of itself to become the other.", - "xrefs" : [ "PATOC:LC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:01:57Z" } ] }, "type" : "CLASS", - "lbl" : "transformed to" + "lbl" : "obsolete relative thickness value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000294", + "id" : "http://purl.obolibrary.org/obo/PATO_0000592", "meta" : { + "definition" : { + "val" : "A thickness which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "thin", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "low thickness", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "slender", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000591" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete process value" + "lbl" : "decreased thickness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002471", + "id" : "http://purl.obolibrary.org/obo/PATO_0000591", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position.", - "xrefs" : [ "PATOC:NV" ] + "val" : "A thickness which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002472" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "thick", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:03:45Z" + "pred" : "hasExactSynonym", + "val" : "stout", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "high thickness", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "thickened", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000592" } ] }, "type" : "CLASS", - "lbl" : "increased velocity" + "lbl" : "increased thickness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001140", + "id" : "http://purl.obolibrary.org/obo/PATO_0000594", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -24180,9 +24794,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete immunoglobulin concentration value" + "lbl" : "obsolete relative volume value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001145", + "id" : "http://purl.obolibrary.org/obo/PATO_0000593", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -24193,94 +24807,119 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete ig m concentration value" + "lbl" : "obsolete absolute volume value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002476", + "id" : "http://purl.obolibrary.org/obo/PATO_0000596", "meta" : { "definition" : { - "val" : "A position quality inhering in a bearer by virtue of the bearer's forming the end of another entity.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A volume which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "small volume", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "low volume", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000595" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:18:08Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "terminal" + "lbl" : "decreased volume" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000297", + "id" : "http://purl.obolibrary.org/obo/PATO_0000595", "meta" : { "definition" : { - "val" : "A quality of a process which ends earlier than the natural end time or reference process.", - "xrefs" : [ "PATOC:LC" ] + "val" : "A volume which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "abolished", + "val" : "high volume", "xrefs" : [ ] }, { "pred" : "hasRelatedSynonym", - "val" : "incomplete", + "val" : "large volume", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "TODO: the definition is incorrect. See absent." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001508" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000596" } ] }, "type" : "CLASS", - "lbl" : "arrested" + "lbl" : "increased volume" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002477", + "id" : "http://purl.obolibrary.org/obo/CHEBI_59999", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's disposition to breaks without significant deformation (strain) when subjected to stress.", - "xrefs" : [ "wikipedia:http://en.wikipedia.org/wiki/Brittleness" ] + "val" : "A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/chebi#3_STAR" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "Chemische Substanz", + "xrefs" : [ "ChEBI" ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:25:03Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "chebi_ontology" } ] }, "type" : "CLASS", - "lbl" : "brittle" + "lbl" : "chemical substance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001146", + "id" : "http://purl.obolibrary.org/obo/GO_0038023", "meta" : { + "definition" : { + "val" : "Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.", + "xrefs" : [ "GOC:bf", "GOC:signaling" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "receptor activity involved in signal transduction", + "xrefs" : [ "GOC:bf" ] + }, { + "pred" : "hasBroadSynonym", + "val" : "receptor activity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0004872" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "rfoulger" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-08-01T02:45:27Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0019041" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "molecular_function" } ] }, "type" : "CLASS", - "lbl" : "obsolete resistance value" + "lbl" : "signaling receptor activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000296", + "id" : "http://purl.obolibrary.org/obo/PATO_0000529", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -24291,48 +24930,45 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete speed value" + "lbl" : "obsolete drug sensitive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002474", + "id" : "http://purl.obolibrary.org/obo/PATO_0000528", "meta" : { - "definition" : { - "val" : "A flavor quality inhering in a bearer by virtue of the bearer's having an acrid, sharp, or disagreeable flavor.", - "xrefs" : [ "PATOC:LC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:09:15Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "bitter" + "lbl" : "obsolete drug insensitive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000299", + "id" : "http://purl.obolibrary.org/obo/PATO_0001859", "meta" : { "definition" : { - "val" : "A mobility quality of inhering in a bearer by virtue of the bearer's disposition to move freely.", + "val" : "A coordination which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high coordination", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000300" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001860" } ] }, "type" : "CLASS", - "lbl" : "mobile" + "lbl" : "increased coordination" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001143", + "id" : "http://purl.obolibrary.org/obo/PATO_0000521", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -24343,43 +24979,24 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete ig e concentration value" + "lbl" : "obsolete drug sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002475", + "id" : "http://purl.obolibrary.org/obo/PATO_0001853", "meta" : { "definition" : { - "val" : "A position quality inhering in a bearer by virtue of the bearer's existing near the end of another entity.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of cerebral spinal fluid.", + "xrefs" : [ "PATOC:mh" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-15T12:17:41Z" - } ] - }, - "type" : "CLASS", - "lbl" : "subterminal" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001144", - "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete ig g concentration value" + "lbl" : "hydrocephalic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000298", + "id" : "http://purl.obolibrary.org/obo/PATO_0000520", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -24390,22 +25007,24 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete not arrested value" + "lbl" : "obsolete radiation sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000291", + "id" : "http://purl.obolibrary.org/obo/PATO_0001854", "meta" : { + "definition" : { + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being situated at right angles to the horizon.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative respiratory rate" + "lbl" : "vertical" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000290", + "id" : "http://purl.obolibrary.org/obo/PATO_0000523", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -24416,90 +25035,101 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute respiratory rate" + "lbl" : "obsolete insecticide sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002007", + "id" : "http://purl.obolibrary.org/obo/PATO_0001851", "meta" : { "definition" : { - "val" : "A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A structure quality inhering in a bearer by virtue of the bearer's exhibiting transient abnormal enlargement, not due to cell proliferation.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "xrefs" : [ { - "val" : "Image:http://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "swelling", + "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Use this term or an is_a child of this term when the entire shape of the object is known." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002008" } ] }, "type" : "CLASS", - "lbl" : "convex 3-D shape" + "lbl" : "swollen" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002008", + "id" : "http://purl.obolibrary.org/obo/PATO_0001852", "meta" : { "definition" : { - "val" : "A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "xrefs" : [ { - "val" : "Image:http://en.wikipedia.org/wiki/Image:Convex_polygon_illustration2.png" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "luxation", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "dislocation", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "luxated", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "relational dislocated quality", + "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0002159" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0002158" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002007" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001479" } ] }, "type" : "CLASS", - "lbl" : "concave 3-D shape" + "lbl" : "dislocated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002005", + "id" : "http://purl.obolibrary.org/obo/PATO_0000522", "meta" : { - "definition" : { - "val" : "Surface shape that refers to the inward or outward curvature of the surface.", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "concavity" + "lbl" : "obsolete herbicide sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002489", + "id" : "http://purl.obolibrary.org/obo/PATO_0001857", "meta" : { "definition" : { - "val" : "Overlap with quality inhering in a bearer by virtue of the bearer's being positioned under another entity so as to be covered by some portion of it.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A shape quality in a bearer by virtue of the bearer's curving inward.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T04:13:04Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001355" } ] }, "type" : "CLASS", - "lbl" : "overlapped by" + "lbl" : "concave" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001158", + "id" : "http://purl.obolibrary.org/obo/PATO_0000525", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -24510,302 +25140,248 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative concentration value" + "lbl" : "obsolete soil composition sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001159", + "id" : "http://purl.obolibrary.org/obo/PATO_0001858", "meta" : { "definition" : { - "val" : "A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration.", + "val" : "A functionality quality inhering in a bearer by virtue of being not completely paralysed.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "concentrated" + "lbl" : "partially paralysed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002006", + "id" : "http://purl.obolibrary.org/obo/PATO_0000524", "meta" : { - "definition" : { - "val" : "A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity.", - "xrefs" : [ "PATOC:CJM" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "2-D projection", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "cross-sectional", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "2-D shape" + "lbl" : "obsolete plant growth hormone sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002009", + "id" : "http://purl.obolibrary.org/obo/PATO_0000527", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity.", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "branchiness" + "lbl" : "obsolete relative drug sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002483", + "id" : "http://purl.obolibrary.org/obo/PATO_0001855", "meta" : { "definition" : { - "val" : "Positional quality in which an entity is located outside of another entity.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being in the plane of the horizon.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-30T06:06:27Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "external to" + "lbl" : "horizontal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001152", + "id" : "http://purl.obolibrary.org/obo/PATO_0001856", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An oriented quality inhering in a bearer by virtue of the bearer's being turned inward upon itself.", + "xrefs" : [ "die.net:die.net" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "susceptible", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001153" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "For example, a tubular organ or part." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "susceptible toward" + "lbl" : "introverted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002000", + "id" : "http://purl.obolibrary.org/obo/PATO_0000526", "meta" : { - "definition" : { - "val" : "A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity.", - "xrefs" : [ "PATOC:CJM" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "xrefs" : [ { - "val" : "OBO_REL:lacks_part" - } ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "lacks all physical parts of type", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Example: [E=organism Q=lacks_all_parts_of_type E2=Wing] - applies to an organism. A relational quality in which the bearer entity has no parts of the specified type. The bearer of this quality has_part = 0 of the indicated entity type, where a comparable organism usually has at least 1 part of the same type. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e lacks all parts of type X at time t, then there exists no instances x of X at t such that x part_of e that has no wings, where wings are normally present in that organism type. In OWL this is equivalent to a restriction on the OBO_REL:has_part relation with cardinality=0, i.e has_part 0 E2." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001557" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "lacks all parts of type" + "lbl" : "obsolete absolute drug sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002484", + "id" : "http://purl.obolibrary.org/obo/PATO_0001850", "meta" : { "definition" : { - "val" : "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of an inverted letter V.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being fibrous tissue that replaces normal tissue destroyed by injury or disease.", + "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasBroadSynonym", - "val" : "chevron shaped", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T03:55:44Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "inverted-V shaped" + "lbl" : "scarred" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001153", + "id" : "http://purl.obolibrary.org/obo/chebi#3_STAR", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's lacking susceptibilty toward an external stimulus.", - "xrefs" : [ "PATO:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "insusceptible", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001152" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Manually annotated by ChEBI Team" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000539", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "insusceptible toward" + "lbl" : "obsolete drought sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001150", + "id" : "http://purl.obolibrary.org/obo/PATO_0000532", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute susceptibility value" + "lbl" : "obsolete micronutrient sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002481", + "id" : "http://purl.obolibrary.org/obo/PATO_0001864", "meta" : { - "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a slanting direction or position : neither perpendicular nor parallel.", - "xrefs" : [ "merriam-wester:http://www.merriam-webster.com/dictionary/oblique" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-30T05:49:50Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001865" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "oblique orientation" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002482", + "id" : "http://purl.obolibrary.org/obo/PATO_0001865", "meta" : { "definition" : { - "val" : "Shape quality inhering in a bearer by virtue of the bearer exhibiting a narrow and elongate opening.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. Includes spheres and oblate/prolate spheroids.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Spheroid" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "sphericality", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-09-30T05:51:39Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001864" } ] }, "type" : "CLASS", - "lbl" : "slit-like" + "lbl" : "spheroid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001151", + "id" : "http://purl.obolibrary.org/obo/PATO_0000531", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative susceptibility value" + "lbl" : "obsolete macronutrient sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002487", + "id" : "http://purl.obolibrary.org/obo/PATO_0000534", "meta" : { - "definition" : { - "val" : "A quality inhering in a process by virtue of that process having exactly one organism as a participant.", - "xrefs" : [ "PATOC:DS" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T04:09:51Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "single organismal process quality" + "lbl" : "obsolete p h sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001156", + "id" : "http://purl.obolibrary.org/obo/PATO_0001862", "meta" : { + "definition" : { + "val" : "A fertility quality inhering in a bearer by virtue of the bearer's disposition to make its offspring sterile.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "grandchildless", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative concentration" + "lbl" : "lack of fertility in offspring" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002003", + "id" : "http://purl.obolibrary.org/obo/PATO_0001863", "meta" : { "definition" : { - "val" : "A quality that inheres in an entire population or part of a population.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A duration quality of a process inhering in a bearer by virtue of the bearer's having slow progressive course of indefinite duration.", + "xrefs" : [ "PATOC:cjm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000389" } ] }, "type" : "CLASS", - "lbl" : "population quality" + "lbl" : "chronic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001157", + "id" : "http://purl.obolibrary.org/obo/PATO_0000533", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -24816,193 +25392,119 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute concentration value" + "lbl" : "obsolete osmotic response sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002004", + "id" : "http://purl.obolibrary.org/obo/PATO_0000536", "meta" : { - "definition" : { - "val" : "A shape that inheres in a part of a surface. An object can have different surface shapes on different parts of its surface.", - "xrefs" : [ "PATOC:CJM" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Consider PATO:0001925" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete surface shape" + "lbl" : "obsolete water sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002488", + "id" : "http://purl.obolibrary.org/obo/PATO_0001868", "meta" : { "definition" : { - "val" : "Overlap with quality inhering in a bearer by virtue of the bearer's being positioned over another entity so as to cover some portion of it.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A fluorescence quality inhering in a bearer by virtue of the bearer's exhibiting fluorescence which is self-induced.", + "xrefs" : [ "PATOC:mb" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T04:12:22Z" } ] }, "type" : "CLASS", - "lbl" : "overlapping" + "lbl" : "autofluorescence" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002001", + "id" : "http://purl.obolibrary.org/obo/PATO_0001869", "meta" : { "definition" : { - "val" : "The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. 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"val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:15:24Z" } ] }, "type" : "CLASS", - "lbl" : "dorsal orientation" + "lbl" : "U-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001164", + "id" : "http://purl.obolibrary.org/obo/PATO_0000547", "meta" : { "definition" : { - "val" : "A physical quality which inheres in a bearer by virtue of the bearer's exhibiting density.", + "val" : "A photosensitivity quality inhering in a bearer by virtue of the bearer's exhibiting photosensitivity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000546" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dense" + "lbl" : "photosensitive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002011", + "id" : "http://purl.obolibrary.org/obo/PATO_0000546", "meta" : { "definition" : { - "val" : "A structural quality which is held by a bearer when the latter's disposition the presence of abnormally proliferating masses of cells.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "tumorous", + "pred" : "hasRelatedSynonym", + "val" : "photoresistant", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000547" } ] }, "type" : "CLASS", - "lbl" : "neoplastic" + "lbl" : "photoinsensitive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002492", + "id" : "http://purl.obolibrary.org/obo/PATO_0001877", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterolaterally.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle; attached at the broad end.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "anterolaterally directed", + "val" : "spear-shaped", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:13:17Z" } ] }, "type" : "CLASS", - "lbl" : "anterolateral orientation" + "lbl" : "lanceolate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001161", + "id" : "http://purl.obolibrary.org/obo/PATO_0000549", "meta" : { - "definition" : { - "val" : "A concentration which relatively low.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "diluted" + "lbl" : "obsolete far red light sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001162", + "id" : "http://purl.obolibrary.org/obo/PATO_0001878", "meta" : { "definition" : { - "val" : "A concentration which is higher relative to the normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high concentration", + "val" : "S-shaped", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "sigmoidal", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001163" } ] }, "type" : "CLASS", - "lbl" : "increased concentration" + "lbl" : "sigmoid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002493", + "id" : "http://purl.obolibrary.org/obo/PATO_0000548", "meta" : { - "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteroventrally.", - "xrefs" : [ "PATOC:WD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "anteroventrally directed", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:13:55Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "anteroventral orientation" + "lbl" : "obsolete blue light sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001167", + "id" : "http://purl.obolibrary.org/obo/PATO_0001871", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having the shape of a kidney.", + "xrefs" : [ "ISBN:0881923214" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001168" + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "kidney-shaped", + "xrefs" : [ ] }, { + "pred" : "hasRelatedSynonym", + "val" : "bean shaped", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "damaged" + "lbl" : "reniform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002498", + "id" : "http://purl.obolibrary.org/obo/PATO_0001872", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed medially.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resemblance to a cube (a 3-D shape with a square cross section).", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "block-like", + "xrefs" : [ ] + }, { "pred" : "hasExactSynonym", - "val" : "medially directed", + "val" : "cuboidal", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:17:30Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "medial orientation" + "lbl" : "cuboid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002014", + "id" : "http://purl.obolibrary.org/obo/PATO_0000541", "meta" : { - "definition" : { - "val" : "A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "structure, cavities" + "lbl" : "obsolete photosensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002015", + "id" : "http://purl.obolibrary.org/obo/PATO_0000540", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete flooding sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002499", + "id" : "http://purl.obolibrary.org/obo/PATO_0001870", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteriorly.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A shape quality inhering in a circular disk by virtue of the bearer's having a segment of another circle removed from its edge, so that what remains is a shape enclosed by two circular arcs of different diameters which intersect at two points (usually in such a manner that the enclosed shape does not include the center of the original circle).", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Crescent" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "xrefs" : [ { + "val" : "Image:http://upload.wikimedia.org/wikipedia/commons/7/74/Crescent.svg" + } ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "posteriorly directed", + "val" : "crescentic", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "bow-shaped", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "lunate", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:18:21Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "posterior orientation" + "lbl" : "crescent-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001168", + "id" : "http://purl.obolibrary.org/obo/pato#singly_occurring_form_of", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "monadic_form_of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001167" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them." } ] }, - "type" : "CLASS", - "lbl" : "undamaged" + "type" : "PROPERTY", + "lbl" : "singly_occurring_form_of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002012", + "id" : "http://purl.obolibrary.org/obo/PATO_0000554", "meta" : { - "definition" : { - "val" : "A texture quality that exists through a liquid cover on the surface of the bearer.", - "xrefs" : [ "Wikipedia:Wikipedia" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "coating" + "lbl" : "obsolete cold sensitive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001165", + "id" : "http://purl.obolibrary.org/obo/PATO_0001886", "meta" : { + "definition" : { + "val" : "A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water.", + "xrefs" : [ "answers.com:answers.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001884" } ] }, "type" : "CLASS", - "lbl" : "obsolete urine enzyme composition value" + "lbl" : "hydrophilicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002496", + "id" : "http://purl.obolibrary.org/obo/PATO_0001887", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsolaterally.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to having a strong affinity for water; tending to dissolve in, mix with, or be wetted by water.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "dorsolaterally directed", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001885" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:16:04Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "dorsolateral orientation" + "lbl" : "hydrophilic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002013", + "id" : "http://purl.obolibrary.org/obo/PATO_0000553", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of whether the bearer forms a bundle of anatomical fibers, as of muscle or nerve.", - "xrefs" : [ "answers.com:http://www.answers.com/" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "fasciculation" + "lbl" : "obsolete relative temperature sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002497", + "id" : "http://purl.obolibrary.org/obo/PATO_0001884", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed laterally.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A physical quality inhering in a bearer by virtue the bearer's disposition to being water-repellent; tending to repel and not absorb water.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "laterally directed", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:16:45Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001886" } ] }, "type" : "CLASS", - "lbl" : "lateral orientation" + "lbl" : "hydrophobicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001166", + "id" : "http://purl.obolibrary.org/obo/PATO_0000556", "meta" : { + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "thermoresistant", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" @@ -25601,68 +26084,38 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete urine enzyme composition" + "lbl" : "obsolete thermoinsensitive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002490", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_207598", "meta" : { - "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteriorly.", - "xrefs" : [ "PATOC:WD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "anteriorly directly", + "pred" : "hasRelatedSynonym", + "val" : "Homo/Pan/Gorilla group", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:11:26Z" } ] }, "type" : "CLASS", - "lbl" : "anterior orientation" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#SubsetProperty", - "type" : "PROPERTY", - "lbl" : "subset_property" + "lbl" : "Homininae" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002491", + "id" : "http://purl.obolibrary.org/obo/PATO_0001885", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's lacking affinity for water; tending to repel and not absorb water; tending not to dissolve in or mix with or be wetted by water.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "anterodorsally directed", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002526" + "val" : "http://purl.obolibrary.org/obo/PATO_0001887" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-10-10T05:12:15Z" } ] }, "type" : "CLASS", - "lbl" : "anterodorsal orientation" + "lbl" : "hydrophobic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001160", + "id" : "http://purl.obolibrary.org/obo/PATO_0000555", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -25673,9 +26126,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete unconcentrated" + "lbl" : "obsolete heat sensitive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000246", + "id" : "http://purl.obolibrary.org/obo/PATO_0000558", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -25686,159 +26139,204 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete postural reflex" + "lbl" : "obsolete size value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002425", + "id" : "http://purl.obolibrary.org/obo/PATO_0000557", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete thermosensitive" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001888", "meta" : { "definition" : { - "val" : "Open to view or not covered by another entity.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A quality of a liquid inhering in a bearer by virtue of the bearer's ability to mix with (dissolve in) another liquid.", + "xrefs" : [ "Chemicool:Chemicool" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-20T11:47:16Z" } ] }, "type" : "CLASS", - "lbl" : "exposed" + "lbl" : "miscibility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001578", + "id" : "http://purl.obolibrary.org/obo/PATO_0001889", "meta" : { "definition" : { - "val" : "A permeability which is relatively low.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having the border, edge, or outline cut into a series of segments of circles resembling a scallop-shell.", + "xrefs" : [ "Oxford:EnglishDictionary" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low permeability", + "val" : "crenulate", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "crenate", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001577" } ] }, "type" : "CLASS", - "lbl" : "decreased permeability" + "lbl" : "scalloped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000245", + "id" : "http://purl.obolibrary.org/obo/PATO_0000559", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete pinna reflex" + "lbl" : "obsolete absolute size value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002426", + "id" : "http://purl.obolibrary.org/obo/PATO_0001882", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a boat.", - "xrefs" : [ "wordnetweb:wordnetweb" ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a slug.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:12:03Z" } ] }, "type" : "CLASS", - "lbl" : "scaphoid" + "lbl" : "limaciform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001579", + "id" : "http://purl.obolibrary.org/obo/PATO_0000550", "meta" : { - "definition" : { - "val" : "A physical quality that is the ability to contract or shrink.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "contractility" + "lbl" : "obsolete red light sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002423", + "id" : "http://purl.obolibrary.org/obo/PATO_0001883", "meta" : { "definition" : { - "val" : "A round or lobulated protruding form resembling a nipple.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's gradually becoming thicker towards the end.", + "xrefs" : [ "MP:0000576" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "club-shaped", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "clubbed", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "club-like", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001797" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T03:13:44Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "clavate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000552", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "papillomatous" + "lbl" : "obsolete absolute temperature sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001576", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_117571", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "bony vertebrates", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Euteleostomi" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001880", "meta" : { "definition" : { - "val" : "A pressure which is relatively high.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's having a tail or tail-like projection.", + "xrefs" : [ "PATOC:cjm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "tailed", + "xrefs" : [ ] + }, { "pred" : "hasExactSynonym", - "val" : "high pressure", + "val" : "caudal", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001575" } ] }, "type" : "CLASS", - "lbl" : "increased pressure" + "lbl" : "caudate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000248", + "id" : "http://purl.obolibrary.org/obo/PATO_0001881", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's forming two equal obtuse triangles with a short side in common.", + "xrefs" : [ "ISBN:0881923214", "RKC:RKC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "sagittate", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Gradually enlarged at the base, like the head of an arrow." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete pupillary reflex" + "lbl" : "arrow-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000247", + "id" : "http://purl.obolibrary.org/obo/PATO_0000551", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -25849,39 +26347,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete proboscis extension reflex" + "lbl" : "obsolete u v light sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002424", - "meta" : { - "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's having two or more entities that extend from a common point in different directions.", - "xrefs" : [ "PATOC:AD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-20T11:43:47Z" - } ] - }, + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_117570", "type" : "CLASS", - "lbl" : "divergent from" + "lbl" : "Teleostomi" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001577", + "id" : "http://purl.obolibrary.org/obo/PATO_0001817", "meta" : { "definition" : { - "val" : "A permeability which is relatively high.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A fatigability which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high permeability", + "val" : "low fatigability", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -25889,369 +26370,289 @@ "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001578" + "val" : "http://purl.obolibrary.org/obo/PATO_0001816" } ] }, "type" : "CLASS", - "lbl" : "increased permeability" + "lbl" : "decreased fatigability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002429", + "id" : "http://purl.obolibrary.org/obo/PATO_0001818", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter X.", - "xrefs" : [ "PATOC:WC" ] + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:19:53Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002026" } ] }, "type" : "CLASS", - "lbl" : "x-shaped" + "lbl" : "progressive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000249", + "id" : "http://purl.obolibrary.org/obo/PATO_0001815", "meta" : { + "definition" : { + "val" : "A strength quality inhering in a bearer by virtue of the bearer's disposition to lose strength.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete righting reflex" + "lbl" : "fatigability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002427", + "id" : "http://purl.obolibrary.org/obo/PATO_0001816", "meta" : { "definition" : { - "val" : "A surface feature shape having numerous very small circular rounded projections or protuberances.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A fatigability which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high fatigability", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001817" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:15:53Z" } ] }, "type" : "CLASS", - "lbl" : "knobbled" + "lbl" : "increased fatigability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002428", + "id" : "http://purl.obolibrary.org/obo/PATO_0001819", "meta" : { "definition" : { - "val" : "A 3-D shape with three supports or legs.", - "xrefs" : [ "PATOC:WC" ] + "val" : "A morphological quality inhering in a bearer by virtue of the bearer's absence or closure of a normal body orifice or tubular passage.", + "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "atresia", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:18:44Z" } ] }, "type" : "CLASS", - "lbl" : "tripodal" + "lbl" : "atretic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001570", + "id" : "http://purl.obolibrary.org/obo/PATO_0001810", "meta" : { "definition" : { - "val" : "A quality of a process inhering in a bearer by virtue of the bearer's having fewer processual parts.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by one or more creases in a normally smooth surface.", + "xrefs" : [ "url:http://www.thefreedictionary.com/wrinkled" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "having decreased processual parts" + "lbl" : "wrinkled" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0009892", + "id" : "http://purl.obolibrary.org/obo/PATO_0001813", "meta" : { "definition" : { - "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", - "xrefs" : [ "GOC:go_curators" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's lack elastic tension that facilitate response to stimuli.", + "xrefs" : [ "PATOC:GVG" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "down regulation of metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "down-regulation of metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "inhibition of organismal metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "negative regulation of organismal metabolism", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "negative regulation of metabolism", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "downregulation of metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "inhibition of metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "negative regulation of multicellular organismal metabolic process", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0044252" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "negative regulation of metabolic process" + "lbl" : "atonicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001571", + "id" : "http://purl.obolibrary.org/obo/PATO_0001814", "meta" : { "definition" : { - "val" : "A size quality inhering in a bearer by virtue of the bearer's being made wider or larger in all dimensions.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's impaired elastic tension that facilitate response to stimuli.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dilated" + "lbl" : "dystonicity" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0009893", + "id" : "http://purl.obolibrary.org/obo/PATO_0001811", "meta" : { "definition" : { - "val" : "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", - "xrefs" : [ "GOC:go_curators" ] + "val" : "A relaxation which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "positive regulation of organismal metabolism", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "up regulation of metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "stimulation of organismal metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "stimulation of metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "up-regulation of metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "positive regulation of multicellular organismal metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "activation of metabolic process", - "xrefs" : [ ] - }, { "pred" : "hasExactSynonym", - "val" : "positive regulation of metabolism", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "up-regulation of organismal metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "upregulation of metabolic process", + "val" : "high relaxation", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0044253" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "GO has now relevant relation terms which should be used instead." + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "positive regulation of metabolic process" + "lbl" : "obsolete increased relaxation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000240", + "id" : "http://purl.obolibrary.org/obo/PATO_0001812", "meta" : { + "definition" : { + "val" : "A relaxation which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low relaxation", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "GO has now relevant relation terms which should be used instead." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete contact righting reflex" + "lbl" : "obsolete decreased relaxation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002421", + "id" : "http://purl.obolibrary.org/obo/GO_0010562", "meta" : { "definition" : { - "val" : "Having or resembling the characteristic of a cicatrix - a scar resulting from formation and contraction of fibrous tissue.", - "xrefs" : [ "mw:http://www.merriam-webster.com/dictionary/cicatricial" ] + "val" : "Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T03:08:09Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "cicatricial" + "lbl" : "positive regulation of phosphorus metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001574", + "id" : "http://purl.obolibrary.org/obo/GO_0010563", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's motion characteristic.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "flow rate" + "lbl" : "negative regulation of phosphorus metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000242", + "id" : "http://purl.obolibrary.org/obo/PATO_0001828", "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of male and external sexual characteristics of female.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete flinch reflex" + "lbl" : "male pseudohermaphrodite" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000241", + "id" : "http://purl.obolibrary.org/obo/PATO_0001829", "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of female and external sexual characteristics of male.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete corneal reflex" + "lbl" : "female pseudohermaphrodite" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001575", + "id" : "http://purl.obolibrary.org/obo/PATO_0001826", "meta" : { "definition" : { - "val" : "A pressure which is relatively low.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A wetness quality that is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low pressure", + "val" : "low wetness", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001825" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001576" } ] }, "type" : "CLASS", - "lbl" : "decreased pressure" + "lbl" : "decreased wetness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002422", + "id" : "http://purl.obolibrary.org/obo/PATO_0001827", "meta" : { "definition" : { - "val" : "Pertaining to the individual parts making up an aggregate fruit like a many-lobed \"berry,\" such as a raspberry.", - "xrefs" : [ "wikipedia:https://en.wikipedia.org/wiki/Acinus" ] + "val" : "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of one sex and external sexual characteristics of the other sex.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Acinus is Latin for berry." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T03:11:10Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "acinar" + "lbl" : "pseudohermaphrodite" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000244", + "id" : "http://purl.obolibrary.org/obo/PATO_0001820", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001444" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete ocular reflex" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001572", - "meta" : { - "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001784" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" @@ -26259,113 +26660,118 @@ }, "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001573", + "id" : "http://purl.obolibrary.org/obo/PATO_0001821", "meta" : { "definition" : { - "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's having equal dimensions or measurements.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's having no opening.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "unperforated", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002112" } ] }, "type" : "CLASS", - "lbl" : "isometrical" + "lbl" : "imperforate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000243", + "id" : "http://purl.obolibrary.org/obo/PATO_0001824", "meta" : { + "definition" : { + "val" : "A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001823" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete lordosis reflex" + "lbl" : "dry" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002420", + "id" : "http://purl.obolibrary.org/obo/PATO_0001825", "meta" : { "definition" : { - "val" : "Having both hydrophilic and hydrophobic (or lipophilic) groups.", - "xrefs" : [ "wikipedia:http://en.wiktionary.org/wiki/amphiphilic" ] + "val" : "A wetness quality that is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T03:04:39Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001826" } ] }, "type" : "CLASS", - "lbl" : "amphiphilic" + "lbl" : "increased wetness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002436", + "id" : "http://purl.obolibrary.org/obo/IAO_0010000", "meta" : { - "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's position being displaced from a reference point.", - "xrefs" : [ "PATOC:AD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:32:22Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Person:Alan Ruttenberg" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Person:Alan Ruttenberg" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has axiom id" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI" } ] }, - "type" : "CLASS", - "lbl" : "offset" + "type" : "PROPERTY", + "lbl" : "has axiom label" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000257", + "id" : "http://purl.obolibrary.org/obo/PATO_0001822", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of whether the bearer's being covered by a liquid.", + "xrefs" : [ "wordreference.com:wordreference.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute taste_acuity" + "lbl" : "wetness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001589", + "id" : "http://purl.obolibrary.org/obo/PATO_0001823", "meta" : { "definition" : { - "val" : "Increased, intensified.", + "val" : "A wetness quality inhering in a bearer by virtue of the bearer's being covered by a liquid.", "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Obsoleted because it used to be a child of behavioral quality, which really meant increased magnitude of a given behavior. Now this can be done by using increased magnitude with another quality." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", - "val" : "PATO:0002017" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001824" } ] }, "type" : "CLASS", - "lbl" : "obsolete enhanced" + "lbl" : "wet" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001105", + "id" : "http://purl.obolibrary.org/obo/PATO_0000507", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -26376,174 +26782,179 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute strain value" + "lbl" : "obsolete disease sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002437", + "id" : "http://purl.obolibrary.org/obo/PATO_0001839", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being locked together or interconnected to another entity.", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "A fluid flow that is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high flow", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:37:13Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001838" } ] }, "type" : "CLASS", - "lbl" : "interlocked with" + "lbl" : "increased fluid flow" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000256", + "id" : "http://purl.obolibrary.org/obo/PATO_0000506", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete taste type" + "lbl" : "obsolete absolute sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001106", + "id" : "http://purl.obolibrary.org/obo/PATO_0000509", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative strain value" + "lbl" : "obsolete stress sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002434", + "id" : "http://purl.obolibrary.org/obo/PATO_0001837", "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located at a right angle relative to another entity.", - "xrefs" : [ "PATOC:WC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:29:55Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001847" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "perpendicular to" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001587", + "id" : "http://purl.obolibrary.org/obo/PATO_0001838", "meta" : { "definition" : { - "val" : "A variability of rate which is relatively high.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A flow that is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high variability of rate", + "val" : "low flow", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001839" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001588" } ] }, "type" : "CLASS", - "lbl" : "increased variability of rate" + "lbl" : "decreased fluid flow" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000259", + "id" : "http://purl.obolibrary.org/obo/PATO_0000508", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete visual_ability" + "lbl" : "obsolete relative sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001103", + "id" : "http://purl.obolibrary.org/obo/PATO_0001831", "meta" : { + "definition" : { + "val" : "A female fertility which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high female fertility", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001830" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative stiffness value" + "lbl" : "increased female fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002435", + "id" : "http://purl.obolibrary.org/obo/PATO_0001832", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer touching another entity along a border or with a projecting part.", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "A male fertility which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "abut", + "val" : "high male fertility", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:31:12Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001833" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "abutting" + "lbl" : "increased male fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000258", + "id" : "http://purl.obolibrary.org/obo/PATO_0000501", "meta" : { + "definition" : { + "val" : "A phase which occurs during dark cycle.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative taste_acuity" + "lbl" : "dark phase" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001588", + "id" : "http://purl.obolibrary.org/obo/PATO_0001830", "meta" : { "definition" : { - "val" : "A variability of rate which is relatively low.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A female fertility which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low variability of rate", + "val" : "low female fertility", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -26551,204 +26962,196 @@ "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001587" - } ] - }, - "type" : "CLASS", - "lbl" : "decreased variability of rate" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001104", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "http://purl.obolibrary.org/obo/PATO_0001831" } ] }, "type" : "CLASS", - "lbl" : "obsolete strain value" + "lbl" : "decreased female fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001109", + "id" : "http://purl.obolibrary.org/obo/PATO_0000500", "meta" : { + "definition" : { + "val" : "A phase which occurs earlier than the natural start time.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute amplitude value" + "lbl" : "advanced phase" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002438", + "id" : "http://purl.obolibrary.org/obo/PATO_0001835", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being located or placed beneath the skin.", - "xrefs" : [ "thefreedictionary:thefreedictionary" ] + "val" : "A fertility which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "subcutaneous", + "val" : "high fertility", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:41:50Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001834" } ] }, "type" : "CLASS", - "lbl" : "subdermal" + "lbl" : "increased fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001107", + "id" : "http://purl.obolibrary.org/obo/PATO_0000503", "meta" : { + "definition" : { + "val" : "A phase which occurs during the light cycle.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete density value" + "lbl" : "light phase" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001108", + "id" : "http://purl.obolibrary.org/obo/PATO_0001836", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer with some kind of aperture or opening that is blocked or clogged.", + "xrefs" : [ "answers.com:answers.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative amplitude value" + "lbl" : "congested" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002439", + "id" : "http://purl.obolibrary.org/obo/PATO_0000502", "meta" : { "definition" : { - "val" : "An angular shape quality inhering in a bearer by virtue of the bearer's having two angles in its length giving the bearer the form of the letter W.", - "xrefs" : [ "PATOC:WC" ] + "val" : "A quality of a process which starts later than the natural start time or the reference process.", + "xrefs" : [ "PATOC:LC" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "late", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:45:54Z" } ] }, "type" : "CLASS", - "lbl" : "w-shaped" + "lbl" : "delayed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001581", + "id" : "http://purl.obolibrary.org/obo/PATO_0001833", "meta" : { "definition" : { - "val" : "A contractility which is relatively low.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A male fertility which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low contractility", + "val" : "low male fertility", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001832" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001580" } ] }, "type" : "CLASS", - "lbl" : "decreased contractility" + "lbl" : "decreased male fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001582", + "id" : "http://purl.obolibrary.org/obo/PATO_0000505", "meta" : { "definition" : { - "val" : "A spatial quality inhering in an inactive muscle or muscle fibers by virtue of the bearer's exhibiting gradual lengthening.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "GO has now relevant relation terms which should be used instead." - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000504" } ] }, "type" : "CLASS", - "lbl" : "obsolete relaxational quality" + "lbl" : "rhythmic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000251", + "id" : "http://purl.obolibrary.org/obo/PATO_0000504", "meta" : { + "definition" : { + "val" : "A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000505" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete startle reflex" + "lbl" : "arrhythmic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001580", + "id" : "http://purl.obolibrary.org/obo/PATO_0001834", "meta" : { "definition" : { - "val" : "A contractility which is relatively high.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A fertility which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high contractility", + "val" : "low fertility", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001835" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001581" } ] }, "type" : "CLASS", - "lbl" : "increased contractility" + "lbl" : "decreased fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000250", + "id" : "http://purl.obolibrary.org/obo/PATO_0000518", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete spinal reflex" + "lbl" : "obsolete chemical sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001101", + "id" : "http://purl.obolibrary.org/obo/PATO_0000517", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -26759,167 +27162,137 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete stiffness value" + "lbl" : "obsolete abiotic stress sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000253", + "id" : "http://purl.obolibrary.org/obo/PATO_0001848", "meta" : { + "definition" : { + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved asymmetrically.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete swallowing reflex" + "lbl" : "asymmetrically curved" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001585", + "id" : "http://purl.obolibrary.org/obo/PATO_0000519", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to transmit of an entity through a medium.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Examples could be heat or electricity or sound." + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "conductivity" + "lbl" : "obsolete humidity sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002432", + "id" : "http://purl.obolibrary.org/obo/PATO_0001849", "meta" : { "definition" : { - "val" : "A shape that is in the form of a spade.", - "xrefs" : [ "PATOC:WC" ] + "val" : "A texture quality inhering in a bearer by virtue of a portion of the bearer's surface being scraped away.", + "xrefs" : [ "answers.com:answers.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:26:49Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "spade-shaped" + "lbl" : "abrased" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002433", + "id" : "http://purl.obolibrary.org/obo/GO_0098590", "meta" : { "definition" : { - "val" : "A surface feature shape marked by large amounts of relief, often with multiple ridges and grooves in close association. Topographically complex.", - "xrefs" : [ "PATOC:AD" ] + "val" : "A membrane that is a (regional) part of the plasma membrane.", + "xrefs" : [ "GOC:dos" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "region of plasma membrane", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:27:55Z" + "val" : "2014-03-06T11:55:32Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term should not be used for direct manual annotation as it should always be possible to choose a more specific subclass." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "cellular_component" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "davidos" } ] }, "type" : "CLASS", - "lbl" : "sculpted surface" + "lbl" : "plasma membrane region" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000252", + "id" : "http://purl.obolibrary.org/obo/PATO_0000510", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete suckling reflex" + "lbl" : "obsolete temperature sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001586", + "id" : "http://purl.obolibrary.org/obo/PATO_0001842", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits rate variation or change.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A concentration quality inhering in a bearer by virtue of the bearer's containing acid (hydrogen ions).", + "xrefs" : [ "biology-online:biology-online" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "variability of rate" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001102", - "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pH", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute stiffness value" + "lbl" : "acidity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001583", + "id" : "http://purl.obolibrary.org/obo/PATO_0001843", "meta" : { "definition" : { - "val" : "A variability which is relatively low.", - "xrefs" : [ "PATO:GVG" ] + "val" : "An acidity which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low variability", + "val" : "low acidity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001844" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001584" } ] }, "type" : "CLASS", - "lbl" : "decreased variability" + "lbl" : "decreased acidity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002430", - "meta" : { - "definition" : { - "val" : "A shape quality in which the bearer is shaped like a narrow band; ligulate.", - "xrefs" : [ "thefreedictionary:thefreedictionary" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:21:17Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - } ] - }, - "type" : "CLASS", - "lbl" : "strap-shaped" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000255", + "id" : "http://purl.obolibrary.org/obo/PATO_0000512", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -26930,66 +27303,39 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete taste_acuity" + "lbl" : "obsolete relative disease sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001100", + "id" : "http://purl.obolibrary.org/obo/PATO_0001840", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001485" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete position value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001584", - "meta" : { - "definition" : { - "val" : "A variability which is relatively high.", - "xrefs" : [ "PATO:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high variability", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001583" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "increased variability" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002431", + "id" : "http://purl.obolibrary.org/obo/PATO_0001841", "meta" : { "definition" : { - "val" : "A shape quality in which the bearer possesses a gradual, yet distinct, thinning from a wide starting point.", - "xrefs" : [ "PATOC:WC" ] + "val" : "An intensity which is characterized by temporary abatement in severity.", + "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T09:24:46Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "waisted" + "lbl" : "remittent intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000254", + "id" : "http://purl.obolibrary.org/obo/PATO_0000511", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -27000,1137 +27346,1335 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete vibrissae reflex" + "lbl" : "obsolete absolute disease sensitivity value" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0019222", + "id" : "http://purl.obolibrary.org/obo/PATO_0000514", "meta" : { - "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", - "xrefs" : [ "GOC:go_curators" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "regulation of organismal metabolic process", - "xrefs" : [ "GOC:tb" ] - }, { - "pred" : "hasExactSynonym", - "val" : "regulation of metabolism", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "regulation of multicellular organismal metabolic process", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0044246" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "regulation of metabolic process" + "lbl" : "obsolete intolerant value" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0019220", + "id" : "http://purl.obolibrary.org/obo/PATO_0001846", "meta" : { "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates.", - "xrefs" : [ "GOC:go_curators" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel.", + "xrefs" : [ "answers.com:answers.com" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "regulation of phosphate metabolism", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "regulation of phosphate metabolic process" + "lbl" : "tangled" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0031324", + "id" : "http://purl.obolibrary.org/obo/PATO_0001847", "meta" : { "definition" : { - "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.", - "xrefs" : [ "GOC:mah" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically.", + "xrefs" : [ "WordNet:WordNet" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "inhibition of cellular metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "downregulation of cellular metabolic process", - "xrefs" : [ ] - }, { "pred" : "hasExactSynonym", - "val" : "down-regulation of cellular metabolic process", + "val" : "stenosis", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "negative regulation of cellular metabolism", + "val" : "stricture", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "down regulation of cellular metabolic process", + "val" : "stenotic", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001837" } ] }, "type" : "CLASS", - "lbl" : "negative regulation of cellular metabolic process" + "lbl" : "constricted" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0031325", + "id" : "http://purl.obolibrary.org/obo/PATO_0000513", "meta" : { "definition" : { - "val" : "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.", - "xrefs" : [ "GOC:mah" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "upregulation of cellular metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "up regulation of cellular metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "positive regulation of cellular metabolism", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "activation of cellular metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "stimulation of cellular metabolic process", + "val" : "insensitive", "xrefs" : [ ] }, { - "pred" : "hasExactSynonym", - "val" : "up-regulation of cellular metabolic process", + "pred" : "hasRelatedSynonym", + "val" : "resistant", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000516" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - 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Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body.", + "xrefs" : [ "GOC:cilia", "GOC:curators", "GOC:kmv", "GOC:vw", "ISBN:0198547684", "PMID:16824949", "PMID:17009929", "PMID:20144998" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001592" + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_generic" ], + "xrefs" : [ { + "val" : "Wikipedia:Cilium" + }, { + "val" : "NIF_Subcellular:sao787716553" + }, { + "val" : "FMA:67181" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "primary cilium", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "microtubule-based flagellum", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "eukaryotic flagellum", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "flagellum", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0072372" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms." } ] }, "type" : "CLASS", - "lbl" : "decreased curvature" + "lbl" : "cilium" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002440", + "id" : "http://purl.obolibrary.org/obo/PATO_0002269", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the degree of the bearer's highly topographical with ridges, pits, rugosity or other surface structures.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A structural quality of the collection or massing of one physical object within another physical object.", + "xrefs" : [ "PATOC:CVC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "pooled", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T10:57:42Z" + "val" : "2010-10-26T01:57:02Z" } ] }, "type" : "CLASS", - "lbl" : "ornamentation" + "lbl" : "accumulation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001590", + "id" : "http://purl.obolibrary.org/obo/PATO_0002263", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's coinciding spatially, partially or wholly with another entity.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group.", + "xrefs" : [ "url:http://en.wikipedia.org/wiki/Dephosphorylation" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "overlap", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-16T09:04:21Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002220" } ] }, "type" : "CLASS", - "lbl" : "overlap with" + "lbl" : "dephosphorylated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000262", + "id" : "http://purl.obolibrary.org/obo/PATO_0002264", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being arranged in a systematic fashion.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-16T10:22:52Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete visual placing" + "lbl" : "organization quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001591", + "id" : "http://purl.obolibrary.org/obo/PATO_0002261", "meta" : { "definition" : { - "val" : "A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's location within another entity.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-09T09:36:56Z" } ] }, "type" : "CLASS", - "lbl" : "curvature" + "lbl" : "located in" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000261", + "id" : "http://purl.obolibrary.org/obo/PATO_0002262", "meta" : { "definition" : { - "val" : "A quality of a single physical entity which is held by a bearer when the latter exhibits a state of growth, differentiation, or development.", - "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] + "val" : "A quality inhering in a protein or a molecule by virtue of the addition of a phosphate (PO4) group to the bearer.", + "xrefs" : [ "url:http://en.wikipedia.org/wiki/Phosphorylation" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-16T08:57:56Z" } ] }, "type" : "CLASS", - "lbl" : "maturity" + "lbl" : "phosphorylation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001596", + "id" : "http://purl.obolibrary.org/obo/PATO_0002267", "meta" : { - "definition" : { - "val" : "A depth quality which is relatively high.", - "xrefs" : [ "PATO:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "deep", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001472" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-05T12:34:31Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001666" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased depth" + "lbl" : "edge shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001112", + "id" : "http://purl.obolibrary.org/obo/PATO_0002268", "meta" : { + "definition" : { + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being located in a position equidistant from edges.", + "xrefs" : [ "PATOC:OREGON" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-05T01:09:32Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete energy value" + "lbl" : "centered" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000264", + "id" : "http://purl.obolibrary.org/obo/PATO_0002265", "meta" : { + "definition" : { + "val" : "A behavioral quality of a process inhering in a bearer by virtue of the bearer's disposition to exhibit marked activity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - 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"val" : "gkoutos" + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T11:01:46Z" + "val" : "2010-10-05T12:31:16Z" } ] }, "type" : "CLASS", - "lbl" : "level with" + "lbl" : "3-D shape" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001113", + "id" : "http://purl.obolibrary.org/obo/PATO_0002260", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's being partially upright in position or posture.", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "semi upright", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-08T03:27:21Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - 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"val" : "quality" + "val" : "chebi_ontology" } ] }, "type" : "CLASS", - "lbl" : "everted" + "lbl" : "mineral" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000263", + "id" : "http://purl.obolibrary.org/obo/GO_0005102", "meta" : { + "definition" : { + "val" : "Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.", + "xrefs" : [ "GOC:bf", "GOC:ceb", "ISBN:0198506732" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_mouse" ], + "xrefs" : [ { + "val" : "Wikipedia:Ligand_(biochemistry)" + } ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "receptor ligand", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "receptor-associated protein activity", + "xrefs" : [ ] + }, { + "pred" : "hasBroadSynonym", + "val" : "receptor binding", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - 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"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T11:03:49Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-11-16T11:22:57Z" } ] }, "type" : "CLASS", - "lbl" : "mineralized" + "lbl" : "mottled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002441", + "id" : "http://purl.obolibrary.org/obo/PATO_0002275", "meta" : { "definition" : { - "val" : "A surface feature shape in which the bearer's surface is highly topographical with ridges, pits, rugosity or other surface structures.", - "xrefs" : [ "PATOC:AD" ] + "val" : "A color pattern quality inhering in a bearer by virtue of the bearer's color pattern in which light and dark colors (for example white and black) are codistributed to create a visual impression.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T10:59:42Z" + "val" : "2010-11-16T11:24:15Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002442" + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "ornamented" + "lbl" : "high contrast color pattern" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001594", + "id" : "http://purl.obolibrary.org/obo/PATO_0002272", "meta" : { "definition" : { - "val" : "A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located at the same continuous distance relative to another object.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-26T02:07:42Z" } ] }, "type" : "CLASS", - "lbl" : "arched" + "lbl" : "parallel to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001110", + "id" : "http://purl.obolibrary.org/obo/PATO_0002273", "meta" : { + "definition" : { + "val" : "Multicolored quality inhering in a bearer by virtue of the bearer's being colored with a variegated pattern resembling marble,.", + "xrefs" : [ "url:http://www.oed.com/" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-11-16T11:17:32Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute density value" + "lbl" : "marbled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000266", + "id" : "http://purl.obolibrary.org/obo/PATO_0002278", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's participating in a joint with another entity.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-01-20T05:39:18Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute visual_acuity" - }, { - "id" : "http://purl.obolibrary.org/obo/pato#disposition_slim", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Disposition slim" - } ] - }, - "type" : "PROPERTY" + "lbl" : "articulated with" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000265", + "id" : "http://purl.obolibrary.org/obo/PATO_0002279", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being strongly articulated with another entity.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-01-20T05:39:59Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative visual_ability" + "lbl" : "tightly articulated with" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001595", + "id" : "http://purl.obolibrary.org/obo/PATO_0002276", "meta" : { "definition" : { - "val" : "A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimenision.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A color pattern inhering in a bearer by virtue of bearer's exhibiting vertical bars of one hue or degree of saturation crossing another.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-11-16T11:30:40Z" } ] }, "type" : "CLASS", - "lbl" : "depth" + "lbl" : "barred" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001111", + "id" : "http://purl.obolibrary.org/obo/PATO_0002277", "meta" : { + "definition" : { + "val" : "A quality of certain surfaces which appear to change colour as the angle of view changes.", + "xrefs" : [ "url:http://en.wikipedia.org/wiki/Iridescence" ] + }, "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-12-12T12:37:41Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative density value" + "lbl" : "iridescent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002442", + "id" : "http://purl.obolibrary.org/obo/PATO_0002270", "meta" : { "definition" : { - "val" : "A surface feature shape in which the bearer's surface is lacking ridges, pits, rugosity or other surface structures.", - "xrefs" : [ "PATOC:AD" ] + "val" : "An increased number of physical objects that are accumulated within another physical object usually as a result of a failure to break down or remove objects in a timely manner.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "accumulated", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-01-29T11:00:20Z" + "val" : "2010-10-26T02:00:20Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "george" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002441" + "val" : "http://purl.obolibrary.org/obo/PATO_0002271" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "unornamented" + "lbl" : "increased accumulation" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0031323", + "id" : "http://purl.obolibrary.org/obo/PATO_0002271", "meta" : { "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances.", - "xrefs" : [ "GOC:mah" ] + "val" : "An accumulation which is relative low.", + "xrefs" : [ "PATOC:GVG" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "regulation of cellular metabolism", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002270" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-26T02:04:45Z" } ] }, "type" : "CLASS", - "lbl" : "regulation of cellular metabolic process" + "lbl" : "decreased accumulation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002458", + "id" : "http://purl.obolibrary.org/obo/PATO_0002285", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer being thin and lacking outgrowths.", - "xrefs" : [ "PATOC:JL" ] + "val" : "Branchiness quality inhering in a bearer by virtue of increasing the degree to which there are subdivisions or offshoots in a bearer entity.", + "xrefs" : [ "PATOC:CVS" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-04-09T06:03:56Z" + "val" : "2011-03-10T09:07:57Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002286" } ] }, "type" : "CLASS", - "lbl" : "pin-like" + "lbl" : "increased branchiness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000279", + "id" : "http://purl.obolibrary.org/obo/PATO_0002286", "meta" : { "definition" : { - "val" : "A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Branchiness quality inhering in a bearer by virtue of decreasing the degree to which there are subdivisions or offshoots in a bearer entity.", + "xrefs" : [ "PATOC:CVS" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-03-10T09:08:37Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002285" } ] }, "type" : "CLASS", - "lbl" : "male fertility" + "lbl" : "decreased branchiness" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002022", + "id" : "http://purl.obolibrary.org/obo/PATO_0002283", "meta" : { + "definition" : { + "val" : "A mobility which is relative low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-09-17T13:52:24Z" + "val" : "2011-03-09T09:16:47Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" - } ] - }, - "type" : "PROPERTY", - "lbl" : "directly regulated by" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001127", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002282" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete work value" + "lbl" : "decreased mobility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002459", + "id" : "http://purl.obolibrary.org/obo/PATO_0002284", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a sepal,", - "xrefs" : [ "PATOC:JL" ] + "val" : "A physical quality that pertains by virtue of a pulling force that is directed away from the bearer and attempts to stretch or elongate the bearer.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-04-09T06:04:36Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - } ] - }, - "type" : "CLASS", - "lbl" : "sepal-like" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000278", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "george" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-03-10T08:41:21Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete hybrid fertility" + "lbl" : "tension" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002023", + "id" : "http://purl.obolibrary.org/obo/PATO_0002289", "meta" : { "definition" : { - "val" : "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.", - "xrefs" : [ "GOC:dos" ] + "val" : "A hairy quality inhering in a bearer by virtue of the bearer's being covered with setae.", + "xrefs" : [ "ISBN:0913424137" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-09-17T13:52:38Z" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Setose as a label is used extensively to describe insect phenotypes that have hairy-like appearances (i.e., they are covered in setae, not the hairs of mammals). A bristle is a type of seta." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" - } ] - }, - "type" : "PROPERTY", - "lbl" : "directly negatively regulated by" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001128", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "George Gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-04-04T08:44:10Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute work value" + "lbl" : "setose" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001125", + "id" : "http://purl.obolibrary.org/obo/PATO_0002287", "meta" : { + "definition" : { + "val" : "An elasticity which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-03-30T11:50:21Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002288" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute pressure value" + "lbl" : "increased elasticity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002456", + "id" : "http://purl.obolibrary.org/obo/PATO_0002288", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of an inflorescence.", - "xrefs" : [ "PATOC:JL" ] + "val" : "An elasticity which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002287" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-04-09T06:02:05Z" + "val" : "2011-03-30T11:50:39Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "inflorescence-like" + "lbl" : "decreased elasticity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002024", + "id" : "http://purl.obolibrary.org/obo/GO_0030990", "meta" : { "definition" : { - "val" : "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.", - "xrefs" : [ "GOC:dos" ] + "val" : "A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules.", + "xrefs" : [ "GOC:cilia", "GOC:kmv", "PMID:14570576", "PMID:22118932", "PMID:23945166" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "intraflagellar transport particle", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "IFT complex", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "intraflagellar transport complex", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-09-17T13:52:47Z" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that we deem cilia and microtubule-based flagella to be equivalent." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "cellular_component" } ] }, - "type" : "PROPERTY", - "lbl" : "directly positively regulated by" + "type" : "CLASS", + "lbl" : "intraciliary transport particle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002457", + "id" : "http://purl.obolibrary.org/obo/PATO_0002281", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a leaf.", - "xrefs" : [ "PATOC:JL" ] + "val" : "A cuscpidate quality inhering in a bearer by virtue of the bearer possessing two cusps.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "bicuspid", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-04-09T06:02:58Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-02-07T03:13:18Z" } ] }, "type" : "CLASS", - "lbl" : "leaf-like" + "lbl" : "biscupidate" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002025", + "id" : "http://purl.obolibrary.org/obo/PATO_0002282", "meta" : { "definition" : { - "val" : "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.", - "xrefs" : [ "GOC:dos" ] + "val" : "A mobility which is relative high.", + "xrefs" : [ "PATO:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-09-22T14:14:36Z" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations." + "val" : "2011-03-09T09:16:03Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" - } ] - }, - "type" : "PROPERTY", - "lbl" : "has effector activity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001126", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002283" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative pressure value" + "lbl" : "increased mobility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001129", + "id" : "http://purl.obolibrary.org/obo/PATO_0002280", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's possessing a broad surface in articulation with another entity.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-01-20T05:40:29Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative work value" + "lbl" : "broadly articulated with" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000271", + "id" : "http://purl.obolibrary.org/obo/PATO_0002296", "meta" : { + "definition" : { + "val" : "A texture quality inhering in a surface by virtue of the bearer's being marked by the presence of small, shallow, regular depressions called fovae.", + "xrefs" : [ "Book:Book" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "foveolate", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "pitted", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-05-17T07:59:30Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete prepulse inhibition" + "lbl" : "foveate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002450", + "id" : "http://purl.obolibrary.org/obo/PATO_0002297", "meta" : { "definition" : { - "val" : "A hardness quality of giving significant resistance to pressure.", - "xrefs" : [ "PATOC:CM" ] + "val" : "A cellular motility which is lower relative to the normal or average.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-02-26T02:02:38Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002298" } ] }, "type" : "CLASS", - "lbl" : "firm" + "lbl" : "decreased cellular motility" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002019", + "id" : "http://purl.obolibrary.org/obo/PATO_0002294", "meta" : { "definition" : { - "val" : "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function.", - "xrefs" : [ ] + "val" : "A texture that is uniformly covered in short, oblong, or trench-like depressions.", + "xrefs" : [ "Book:Book" ] }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-07-19T17:30:36Z" + "val" : "2011-05-03T03:12:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "has ligand" + "type" : "CLASS", + "lbl" : "scrobiculate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002451", + "id" : "http://purl.obolibrary.org/obo/PATO_0002295", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's exhibiting a phenotypic difference between males and females of the same species.", - "xrefs" : [ "PATOC:WC" ] + "val" : "A surface feature shape inhering in a surface by virtue of the bearer's being divided by ridge-like structures into a number of small, irregular spaces.", + "xrefs" : [ "Book:Book" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -28138,959 +28682,1383 @@ "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-03-11T09:22:04Z" + "val" : "2011-05-17T07:57:45Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "sexually dimorphic" + "lbl" : "areolate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000270", + "id" : "http://purl.obolibrary.org/obo/PATO_0002298", "meta" : { + "definition" : { + "val" : "A cellular motility which is higher relative to the normal or average.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002297" } ] }, "type" : "CLASS", - "lbl" : "obsolete defecation" + "lbl" : "increased cellular motility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001120", + "id" : "http://purl.obolibrary.org/obo/PATO_0002299", "meta" : { + "definition" : { + "val" : "A cylindrical shape that is hollow.", + "xrefs" : [ "PATOC:GVG" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "tubulate", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "tube-shaped", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "tube like", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-06-08T06:33:50Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative momentum value" + "lbl" : "tubular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000273", + "id" : "http://purl.obolibrary.org/obo/PATO_0002292", "meta" : { "definition" : { - "val" : "A reproductive quality inhering in an organism or population by virtue of the bearer's potential reproductive capacity ad measured by the number of gametes.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Fecundity" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's underlying structure being capable of change.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "transient structure", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "For example, structures undergoing endochondral ossification change in composition from cartilaginous to ossified." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-05-03T03:01:59Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "fecundity" + "lbl" : "transient" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000272", + "id" : "http://purl.obolibrary.org/obo/PATO_0002293", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's underlying structure not changing over time.", + "xrefs" : [ "PATOC:WD" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "permanent structure", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2011-05-03T03:03:50Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative neurobehavioral function" + "lbl" : "permanent" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002015", + "id" : "http://purl.obolibrary.org/obo/PATO_0002290", "meta" : { - "definition" : { - "val" : "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'." + "val" : "George Gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-05-24T09:31:17Z" + "val" : "2011-04-18T05:11:33Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "has positive regulatory component activity" + "type" : "CLASS", + "lbl" : "aplastic/hypoplastic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002454", + "id" : "http://purl.obolibrary.org/obo/PATO_0002291", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a carpel.", - "xrefs" : [ "PATO:JL" ] + "val" : "Absence of a tissue or organ due to failure to develop.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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"pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-13T04:29:32Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative power value" + "lbl" : "cup-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000275", + "id" : "http://purl.obolibrary.org/obo/PATO_0002228", "meta" : { + "definition" : { + "val" : "A tapered shape quality inhering in a bearer by virtue of the bearer's tapering gradually to a sharp point.", + "xrefs" : [ "url:http://www.thefreedictionary.com/acuminate" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-15T09:03:18Z" } ] }, "type" : "CLASS", - 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"val" : "A quality inhering in a bearer by virtue of the bearer's architecture bearing resemblence to a corymb type of inflorescence.", - "xrefs" : [ "PATOC:JL" ] + "val" : "A quadrangular shape quality inhering in a bearer by virtue of the bearer's being approximately rectangular.", + "xrefs" : [ "url:http://dictionary.reference.com/browse/subrectangular?qsrc=2446&o=100074" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-19T12:18:57Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-04-09T06:01:02Z" + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "corymb-like" + "lbl" : "subrectangular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001121", + "id" : "http://purl.obolibrary.org/obo/PATO_0002220", "meta" : { + "definition" : { + "val" : "A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group.", + "xrefs" : [ "wikipedia:en.wikipedia.org/wiki/Phosphorylated" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002263" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-09T01:50:14Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete power value" + "lbl" : "phosphorylated" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002017", + "id" : "http://purl.obolibrary.org/obo/PATO_0002223", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-05-24T09:44:33Z" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B." - 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"val" : "2013-04-08T08:43:31Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001485" + "val" : "2010-07-09T01:59:35Z" } ] }, "type" : "CLASS", - "lbl" : "decondensed" + "lbl" : "oxidized" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000277", + "id" : "http://purl.obolibrary.org/obo/PATO_0002224", "meta" : { "definition" : { - "val" : "A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter V.", + "xrefs" : [ "PATOC:JE" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-13T04:12:13Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "female fertility" + "lbl" : "V-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002018", + "id" : "http://purl.obolibrary.org/obo/PATO_0002221", "meta" : { "definition" : { - "val" : "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", - "xrefs" : [ ] + "val" : "A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a more than normal extent, or fully saturated with phosphate groups.", + "xrefs" : [ "Wikipedia:http://en.wiktionary.org/wiki/hyperphosphorylated" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hyperphosphorylated", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002222" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-05-24T09:49:21Z" + "val" : "2010-07-09T01:51:52Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "has component process" + "type" : "CLASS", + "lbl" : "increased phosphorylation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000276", + "id" : "http://purl.obolibrary.org/obo/PATO_0002222", "meta" : { "definition" : { - "val" : "A reproductive quality inhering in the young of an animal by virtue of their number.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully.", + "xrefs" : [ "Wikipedia:http://en.wiktionary.org/wiki/hypophosphorylated" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "litter size", + "pred" : "hasExactSynonym", + "val" : "hypophosporylated", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-09T01:54:22Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002221" } ] }, "type" : "CLASS", - "lbl" : "brood size" + "lbl" : "decreased phosphorylation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002453", + "id" : "http://purl.obolibrary.org/obo/PATO_0002238", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer bring gradually worn away.", - "xrefs" : [ "PATOC:JL" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved forward or upward.", + "xrefs" : [ "url:http://www.thefreedictionary.com/antrorse" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2013-04-08T08:45:08Z" - } ] - }, - "type" : "CLASS", - "lbl" : "eroding" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001122", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "val" : "2010-07-23T02:22:56Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute power value" + "lbl" : "antrorse" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000209", + "id" : "http://purl.obolibrary.org/obo/PATO_0002239", "meta" : { + "definition" : { + "val" : "A concave 3-D shape that inheres in the bearer by virtue of the bearer's nearly) symmetric shape wide at its ends and narrow in the middle, resembling the figure of number 8.", + "xrefs" : [ "url:http://en.wikipedia.org/wiki/Hourglass-shaped" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "figure 8 shaped", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-23T02:25:24Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete digestive function" + "lbl" : "hourglass-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001534", + "id" : "http://purl.obolibrary.org/obo/PATO_0002236", "meta" : { "definition" : { - "val" : "A color pattern inhering in a bearer by virtue of bearer's having 3 or more hues or degrees of saturations.", - "xrefs" : [ "merriam-webster.:merriam-webster." ] + "val" : "Shape quality inhering in a bearer by virtue of the bearer's being shaped like a wing.", + "xrefs" : [ "url:http://www.thefreedictionary.com/aliform" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "wing-shaped", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-23T02:19:14Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-12-02T09:28:47Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "rfoulger" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute rate value" + "lbl" : "negative regulation of signaling receptor activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000685", + "id" : "http://purl.obolibrary.org/obo/PATO_0002230", "meta" : { + "definition" : { + "val" : "A triangular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, triangular.", + "xrefs" : [ "url:http://www.thefreedictionary.com/Subtriangular" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-19T12:20:59Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative incidence value" + "lbl" : "subtriangular" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001535", + "id" : "http://purl.obolibrary.org/obo/PATO_0002231", "meta" : { "definition" : { - "val" : "A color pattern inhering in a bearer by virtue of bearer's being marked with small spots, patches, or specks of hue or degree of saturation differing from that of the background.", - "xrefs" : [ "merriam-webster.:merriam-webster." ] + "val" : "A split shape quality inhering in a bearer by virtue of the bearer's having or being divided into many lobes or similar segments.", + "xrefs" : [ "url:http://www.thefreedictionary.com/multifid" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "speckled", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-19T12:23:02Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dappled" + "lbl" : "multifid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000201", + "id" : "http://purl.obolibrary.org/obo/GO_2000273", "meta" : { + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of signaling receptor activity.", + "xrefs" : [ "GOC:obol" ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "rfoulger" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-12-02T09:28:50Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete memory" + "lbl" : "positive regulation of signaling receptor activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000688", + "id" : "http://purl.obolibrary.org/obo/PATO_0002234", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's not occurring or existing at the same time or having the same period or phase.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A notched shape quality inhering in a bearer by virtue of the bearer's having a notched tip or edge.", + "xrefs" : [ "url:http://www.thefreedictionary.com/emarginate" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000695" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-19T04:25:58Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "variegated", + "val" : "depigmented", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002248" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-09T04:17:04Z" } ] }, "type" : "CLASS", - "lbl" : "multi-colored" + "lbl" : "unpigmented" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000687", + "id" : "http://purl.obolibrary.org/obo/PATO_0002247", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's having or lacking of substances produced by living organisms that have a color resulting from selective color absorption.", + "xrefs" : [ "url:http://en.wikipedia.org/wiki/Biological_pigment" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-09T04:14:00Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - 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"xrefs" : [ "edp:edp" ] + "val" : "A lobed quality inhering in a bearer by virtue of the bearer's being divided into or having three lobes.", + "xrefs" : [ "url:http://www.thefreedictionary.com/trilobed" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "insoluble", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001537" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-28T12:57:46Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - 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"val" : "A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop.", + "xrefs" : [ "url:wordnetweb.princeton.edu/perl/webwn" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "uninterrupted", + "val" : "drop shaped", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000690" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000429" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-23T02:31:11Z" } ] }, "type" : "CLASS", - 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"id" : "http://purl.obolibrary.org/obo/PATO_0001539", + "id" : "http://purl.obolibrary.org/obo/PATO_0002246", "meta" : { "definition" : { - "val" : "A compositional quality inhering in an bearer by virtue of the bearer's quantities or relative ratios of amylose of the inhering entity.", + "val" : "A force which is relative low.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "amylose compositionality", + "val" : "decreased force amplitude", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-04T11:13:13Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002245" } ] }, "type" : "CLASS", - 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}, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete defensive function" + "lbl" : "fluid flow rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001536", + "id" : "http://purl.obolibrary.org/obo/PATO_0002244", "meta" : { "definition" : { - "val" : "A molecular quality that inheres in a molecular entity by virtue of the bearer's disposition to dissolve in a liquid.", - "xrefs" : [ "edp:edp" ] + "val" : "A flow rate quality inhering in a substance by virtue of the mass of substance which passes through a given surface per unit time.", + "xrefs" : [ "url:http://en.wikipedia.org/wiki/Mass_flow_rate" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-07-28T03:02:03Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "solubility" + "lbl" : "mass flow rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001537", + "id" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "meta" : { "definition" : { - "val" : "A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid.", - "xrefs" : [ "edp:edp" ] + "val" : "q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "soluble", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001538" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'." + } ] + }, + "type" : "PROPERTY", + "lbl" : "increased_in_magnitude_relative_to" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_01000254", + "meta" : { + "definition" : { + "val" : "A system which has the disposition to environ one or more material entities.", + "xrefs" : [ "DOI:10.1186/2041-1480-4-43" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "environment", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "soluble in" + "lbl" : "environmental system" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000207", + "id" : "http://purl.obolibrary.org/obo/RO_0002180", "meta" : { + "definition" : { + "val" : "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "xrefs" : [ { + "val" : "RO:0002180" + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_component" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:Componency" } ] }, - "type" : "CLASS", - "lbl" : "obsolete circulatory function" + "type" : "PROPERTY", + "lbl" : "has component" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000680", + "id" : "http://purl.obolibrary.org/obo/PATO_0002258", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a point.", + "xrefs" : [ "PATOC:http://www.merriam-webster.com/dictionary/pointed" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-08T03:15:16Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute temporal value" + "lbl" : "pointed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000682", + "id" : "http://purl.obolibrary.org/obo/PATO_0002259", "meta" : { + "definition" : { + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located near in space in relation to another entity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "vicinity of", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "close to", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "approaches", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "near to", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-08T03:20:06Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001771" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "obsolete rate value" + "lbl" : "adjacent to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001530", + "id" : "http://purl.obolibrary.org/obo/PATO_0002252", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's behavior.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's being flattened along the antero-posterior axis.", + "xrefs" : [ "PATOC:JC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "behavioral quality of occurrent", + "val" : "antero-posteriorly compressed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-16T03:57:42Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "behavioral quality of a process" + "lbl" : "antero-posteriorly flattened" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001531", + "id" : "http://purl.obolibrary.org/obo/PATO_0002253", "meta" : { "definition" : { - "val" : "A cellular quality that exists by virtue of the disposition of the cell to adhere to other cells and molecules, through the emergent action of the molecular parts of the cell surface.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's being roundish, flattish shape, possibly with a slightly angled edge.", + "xrefs" : [ "PATOC:CVC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "plate-like", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-16T03:57:48Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "cellular adhesivity" + "lbl" : "platelike" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000681", + "id" : "http://purl.obolibrary.org/obo/PATO_0002250", "meta" : { + "definition" : { + "val" : "A degree of pigmentation quality that is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hyperpigmented", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002251" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-09T04:17:19Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete incidence value" + "lbl" : "increased pigmentation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000684", + "id" : "http://purl.obolibrary.org/obo/PATO_0002251", "meta" : { + "definition" : { + "val" : "A degree of pigmentation quality that is relative low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hypopigmented", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-09T04:17:37Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002250" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute incidence value" + "lbl" : "decreased pigmentation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000200", + "id" : "http://purl.obolibrary.org/obo/PATO_0002256", "meta" : { + "definition" : { + "val" : "A cuscpidate quality inhering in a bearer by virtue of the bearer possessing three cusps.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "tricuspid", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-08T02:21:50Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete learning" + "lbl" : "tricuspidate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000683", + "id" : "http://purl.obolibrary.org/obo/PATO_0002257", "meta" : { + "definition" : { + "val" : "A cuscpidate quality inhering in a bearer by virtue of the bearer possessing more than one cusp.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-08T02:23:22Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative temporal value" + "lbl" : "multicuspidate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001545", + "id" : "http://purl.obolibrary.org/obo/PATO_0002254", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's inability of being turned, bowed, or twisted without breaking.", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's surface becoming more extended in a plane.", + "xrefs" : [ "PATOC:CVS" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "stiff", - "xrefs" : [ ] - }, { "pred" : "hasRelatedSynonym", - "val" : "stiffness", + "val" : "compressed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001544" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "george" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-08-16T03:59:34Z" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Becoming flat but not necessarily completely flat." } ] }, "type" : "CLASS", - "lbl" : "inflexible" + "lbl" : "flattened" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0010001", + "id" : "http://purl.obolibrary.org/obo/PATO_0002255", "meta" : { "definition" : { - "val" : "A structural quality inhering in the bearer by virtue of the bearer consisting of multiple structures lacking any physical connection to each other.", - "xrefs" : [ "GOC:dos" ] + "val" : "Texture quality inhering in a bearer by virtue of the bearer's being marked with one or more channels.", + "xrefs" : [ "PATOC:JE" ] }, - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-12-12T08:43:17Z" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "creased", + "xrefs" : [ ] }, { + "pred" : "hasRelatedSynonym", + "val" : "channeled", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "davidos" + "val" : "george" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-09-01T10:27:48Z" } ] }, "type" : "CLASS", - "lbl" : "disconnected" + "lbl" : "grooved" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000697", + "id" : "http://purl.obolibrary.org/obo/PATO_0001336", "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in an individual whose sex is unknown.", + "xrefs" : [ "MGED:MGED" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Unknown is not a type of sex." } ] }, "type" : "CLASS", - "lbl" : "obsolete relative texture value" + "lbl" : "obsolete unknown sex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000213", + "id" : "http://purl.obolibrary.org/obo/RO_0002297", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "results_in_formation_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GOC:mtg_berkeley_2013" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists." }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)" + } ] + }, + "type" : "PROPERTY", + "lbl" : "results in formation of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000004", + "meta" : { + "definition" : { + "val" : "A quality of inhering in a bearer by virtue of the bearer's disposition to move freely.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Should be defined using translocation." } ] }, "type" : "CLASS", - "lbl" : "obsolete neurobehavioral function" + "lbl" : "mobility" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0044237", + "id" : "http://purl.obolibrary.org/obo/GO_0010646", "meta" : { "definition" : { - "val" : "The chemical reactions and pathways by which individual cells transform chemical substances.", - "xrefs" : [ "GOC:go_curators" ] + "val" : "Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] }, - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "intermediary metabolism", - "xrefs" : [ "GOC:mah" ] - }, { - "pred" : "hasExactSynonym", - "val" : "cellular metabolism", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "cellular metabolic process" + "lbl" : "regulation of cell communication" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001546", + "id" : "http://purl.obolibrary.org/obo/GO_0010647", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity characterized by particles arranged such that their shape and volume are relatively stable.", - "xrefs" : [ "Chemistry:http://chemistry.about.com/od/chemistryglossary/a/soliddefinition.htm" ] + "val" : "Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "solidity", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "quality of a solid" + "lbl" : "positive regulation of cell communication" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000212", + "id" : "http://purl.obolibrary.org/obo/PATO_0000003", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -29101,45 +30069,39 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete neural function" + "lbl" : "obsolete assay" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0010000", + "id" : "http://purl.obolibrary.org/obo/PATO_0001337", "meta" : { "definition" : { - "val" : "A structural quality inhering in the bearer by virtue of the bearer consisting of a single, maximally connected structure.", - "xrefs" : [ "GOC:dos" ] + "val" : "A yeast mating type.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-12-12T08:41:11Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "davidos" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "What counts as maximally connected may be relative to some specification of granularity." } ] }, "type" : "CLASS", - "lbl" : "maximally connected" + "lbl" : "yeast mating type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000696", + "id" : "http://purl.obolibrary.org/obo/PATO_0001334", "meta" : { + "definition" : { + "val" : "A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Diameter" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete texture value" + "lbl" : "diameter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000215", + "id" : "http://purl.obolibrary.org/obo/PATO_0000006", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -29150,60 +30112,57 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete respiratory function" + "lbl" : "obsolete process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001543", + "id" : "http://purl.obolibrary.org/obo/PATO_0000005", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking.", - "xrefs" : [ "merriam-webster:merriam-webster" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "flexibility" + "lbl" : "obsolete absolute activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000699", + "id" : "http://purl.obolibrary.org/obo/PATO_0001335", "meta" : { + "definition" : { + "val" : "A mating type that indicates whether the F plasmid has integrated into the chromosome.", + "xrefs" : [ "MGED:MGED" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete glutinous" + "lbl" : "bacterial mating type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001544", + "id" : "http://purl.obolibrary.org/obo/PATO_0000008", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking.", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's scalar absolute value of the rate of change of the bearer's position.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Velocity" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "bendy", + "pred" : "hasRelatedSynonym", + "val" : "velocity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001545" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "flexible" + "lbl" : "speed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000698", + "id" : "http://purl.obolibrary.org/obo/PATO_0000007", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -29214,220 +30173,204 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete floury" + "lbl" : "obsolete relative activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000214", + "id" : "http://purl.obolibrary.org/obo/RO_0002295", "meta" : { + "definition" : { + "val" : "p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss).", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete reproductive function" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000217", + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "results_in_developmental_progression_of" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Ontology_extensions" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + } ] + }, + "type" : "PROPERTY", + "lbl" : "results in developmental progression of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001338", "meta" : { + "definition" : { + "val" : "A biological sex quality inhering in a population of multiple sexes.", + "xrefs" : [ "MGED:MGED" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "For example a mixture of females and male or males and hermaphrodites." } ] }, "type" : "CLASS", - "lbl" : "obsolete immune function" + "lbl" : "mixed sex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001549", + "id" : "http://purl.obolibrary.org/obo/GO_0010648", "meta" : { "definition" : { - "val" : "A sensitivity toward an external stimulus which is higher than normal/average.", - "xrefs" : [ "PATO:GVG" ] + "val" : "Any process that decreases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.", + "xrefs" : [ "GOC:dph", "GOC:tb" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "increased sensitivity", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "high sensitivity toward", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001550" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "increased sensitivity toward" + "lbl" : "negative regulation of cell communication" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000216", + "id" : "http://purl.obolibrary.org/obo/PATO_0001339", "meta" : { + "definition" : { + "val" : "A composition quality inhering in an bearer by virtue of the bearer's homogeneity of a biomaterial.", + "xrefs" : [ "MGED:MGED" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete heart rate" + "lbl" : "biomaterial purity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002481", + "id" : "http://purl.obolibrary.org/obo/PATO_0000009", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "is kinase activity" + "type" : "CLASS", + "lbl" : "obsolete absolute speed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000219", + "id" : "http://purl.obolibrary.org/obo/PATO_0000000", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete healing" + "lbl" : "obsolete pato" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001547", + "id" : "http://purl.obolibrary.org/obo/PATO_0001332", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape.", - "xrefs" : [ "Chemistry:http://chemistry.about.com/od/chemistryglossary/a/gasdefinition.htm", "PATOC:GVG" ] + "val" : "A morphology quality inhering in a bearer by virtue of the bearer's lack of distinct morphology.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "gaseous", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "quality of a gas" + "lbl" : "amorphous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001548", + "id" : "http://purl.obolibrary.org/obo/PATO_0001333", "meta" : { "definition" : { - "val" : "A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape.", - "xrefs" : [ "url:http://www.chemistry-dictionary.com/definition/liquid.php" ] + "val" : "A quality of a process which ends later than the natural end time.", + "xrefs" : [ "PATOC:melissa" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "liquidity", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "quality of a liquid" + "lbl" : "temporally extended" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000218", + "id" : "http://purl.obolibrary.org/obo/PATO_0001330", "meta" : { + "definition" : { + "val" : "A flavor quality inhering in a bearer by virtue of the bearer's lacking flavour.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete repair function" + "lbl" : "flavourless" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0120025", + "id" : "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "meta" : { - "definition" : { - "val" : "A prolongation or process extending from a cell and that is bounded by plasma membrane, e.g. a cilium, lamellipodium, or axon.", - "xrefs" : [ "GOC:krc" ] - }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-03-21T17:26:07Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "kchris" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Metagenomics GO slim" } ] }, - "type" : "CLASS", - "lbl" : "plasma membrane bounded cell projection" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000691", + "id" : "http://purl.obolibrary.org/obo/PATO_0000002", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000694" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000690", + "id" : "http://purl.obolibrary.org/obo/PATO_0000001", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "intermittent", - "xrefs" : [ ] - }, { "pred" : "hasExactSynonym", - "val" : "interrupted", + "val" : "trait", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000689" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000426" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "quality (PATO)" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000072" } ] }, "type" : "CLASS", - "lbl" : "discontinuous" + "lbl" : "quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001541", + "id" : "http://purl.obolibrary.org/obo/PATO_0001331", "meta" : { "definition" : { - "val" : "An amylose composition quality inhering in an bearer by virtue of the bearer's having high amount of amylose content.", - "xrefs" : [ "TO:TO" ] + "val" : "An odor quality inhering in a bearer by virtue of the bearer's having odour.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -29436,422 +30379,490 @@ } ] }, "type" : "CLASS", - "lbl" : "non-glutinous" + "lbl" : "odorous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0010005", + "id" : "http://purl.obolibrary.org/obo/PATO_0000015", "meta" : { "definition" : { - "val" : "A physical quality of a process that is its spatial distribution. For example, bone mineralization follows stereotypical spatial distribution patterns during development, which may be altered in some phenotypes.", - "xrefs" : [ "orcid:0000-0002-7073-9172" ] + "val" : "A chromatic scalar-circular quality inhering in an object that manifests in an observer by virtue of the dominant wavelength of the visible light; may be subject to fiat divisions, typically into 7 or 8 spectra.", + "xrefs" : [ "PATOC:cjm" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "dos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2019-07-18T18:49:08Z" } ] }, "type" : "CLASS", - "lbl" : "spatial distribution of a process" + "lbl" : "color hue" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000693", + "id" : "http://purl.obolibrary.org/obo/PATO_0001347", "meta" : { + "definition" : { + "val" : "A bacterial mating type indicating the presence of F plasmid in a bacterial cell.", + "xrefs" : [ "MGED:MGED" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - 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"xrefs" : [ "answers.com:answers.com" ] + "val" : "A scalar chromatic property that is the degree of purity of perceived light.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Color saturation refers to the amount of white light or gray paint mixed in with the hue (single wavelength) and is a measure of color purity." } ] }, "type" : "CLASS", - "lbl" : "heterochronic" + "lbl" : "color saturation" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002479", + "id" : "http://purl.obolibrary.org/obo/PATO_0001345", "meta" : { "definition" : { - "val" : "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.", - "xrefs" : [ ] + "val" : "A S. pombe mating type determined by the mat1-Mc and mat1-Mi on the mat1 locus.", + "xrefs" : [ "PATOC:GVG" ] }, - 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Think of this as a dimmer switch." } ] }, "type" : "CLASS", - "lbl" : "obsolete muscle function" + "lbl" : "color brightness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000695", + "id" : "http://purl.obolibrary.org/obo/PATO_0000019", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's occurring or existing at the same time or having the same period or phase.", + "val" : "A chromatic property that is the relative position of different hues or degrees of saturation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000688" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "synchronous" + "lbl" : "color pattern" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000210", + "id" : "http://purl.obolibrary.org/obo/PATO_0000018", "meta" : { + "definition" : { + "val" : "A luminous flux quality inhering in a bearer by virtue of the bearer's emitting longer wavelength light following the absorption of shorter wavelength radiation; fluorescence is common with aromatic compounds with several rings joined together.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete excretory function" + "lbl" : "fluorescence" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0010002", + "id" : "http://purl.obolibrary.org/obo/PATO_0001349", "meta" : { "definition" : { - "val" : "The velocity of spatial propagation of a process. 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"id" : "http://purl.obolibrary.org/obo/PATO_0002409", + "id" : "http://purl.obolibrary.org/obo/PATO_0000010", "meta" : { - "definition" : { - "val" : "Bounded structure filled with fluid.", - "xrefs" : [ "PATOC:MPATH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:53:18Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "fluid-filled" + "lbl" : "obsolete relative speed" }, { - "id" : "http://purl.obolibrary.org/obo/pato#directly_associated_with", + "id" : "http://purl.obolibrary.org/obo/PATO_0001341", "meta" : { "definition" : { - "val" : "q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. 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"id" : "http://purl.obolibrary.org/obo/RO_0002473", + "id" : "http://purl.obolibrary.org/obo/PATO_0001342", "meta" : { "definition" : { - "val" : "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.", - "xrefs" : [ ] + "val" : "A S. cerevisiae mating type.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "Saccharomyces cerevisiae mating type" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000012", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "composed primarily of" + "type" : "CLASS", + "lbl" : "obsolete absolute age" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002403", + "id" : "http://purl.obolibrary.org/obo/PATO_0001358", "meta" : { "definition" : { - "val" : "Affecting all regions without specificity of distribution.", - "xrefs" : [ "PATOC:MPTH" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's having a knob or knoblike protuberance.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "generalised", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "umbonate" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000026", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:41:37Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "generalized" + "lbl" : "obsolete carbohydrate composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000224", + "id" : "http://purl.obolibrary.org/obo/PATO_0001359", "meta" : { + "definition" : { + "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having many wrinkles or creases on the surface.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete motor function" + "lbl" : "rugose" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001557", + "id" : "http://purl.obolibrary.org/obo/PATO_0000025", "meta" : { + "definition" : { + "val" : "A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "structure, composition", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "content", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "compositionality", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "composed of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0002000" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0002015" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "For example calcium composition (which may inhere in bone), haemoglobin composition (which may inhere in blood)." } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002404", + "id" : "http://purl.obolibrary.org/obo/PATO_0001356", "meta" : { "definition" : { - "val" : "Affecting a segment or segments.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "A shape quality inhering in a cell by virtue of the bearer's ability to take on two or more different shapes during its life cycle.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:43:13Z" } ] }, "type" : "CLASS", - "lbl" : "segmental" + "lbl" : "pleomorphic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000223", + "id" : "http://purl.obolibrary.org/obo/PATO_0000028", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -29862,152 +30873,110 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete muscle strength" + "lbl" : "obsolete macromolecular composition" }, { - "id" : "http://purl.obolibrary.org/obo/pato#abnormal_slim", + "id" : "http://purl.obolibrary.org/obo/PATO_0000027", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Abnormal/normal slim" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "PROPERTY" + "type" : "CLASS", + "lbl" : "obsolete electrolyte composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002401", + "id" : "http://purl.obolibrary.org/obo/PATO_0001357", "meta" : { "definition" : { - "val" : "characterised by an unidentifiable pattern.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped like a cushion or has a marked convex cushion-like form.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:37:55Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "random pattern" + "lbl" : "pulvinate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000226", + "id" : "http://purl.obolibrary.org/obo/PATO_0000029", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete tactile response" + "lbl" : "obsolete protein composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001554", + "id" : "http://purl.obolibrary.org/obo/PATO_0001350", "meta" : { "definition" : { - "val" : "A sensitivity of a process to oxygen which is lower than normal or average.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A physical quality inhering in a bearer by virtue of the rate of change of the bearer's angular velocity.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Angular_acceleration" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low sensitivity of occurrent to oxygen", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001553" } ] }, "type" : "CLASS", - "lbl" : "decreased sensitivity of a process to oxygen" + "lbl" : "angular acceleration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002402", + "id" : "http://purl.obolibrary.org/obo/PATO_0001351", "meta" : { "definition" : { - "val" : "Multiple lesions some interconnecting with each other.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given area.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Area_density" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:40:18Z" } ] }, "type" : "CLASS", - "lbl" : "multifocal to coalescing" + "lbl" : "area density" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000225", + "id" : "http://purl.obolibrary.org/obo/PATO_0000020", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000014" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "obsolete sensory function" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001555", + "id" : "http://purl.obolibrary.org/obo/PATO_0001354", "meta" : { "definition" : { - "val" : "The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A optical quality inhering in a bearer by virtue of the bearer's exhibiting low opacity.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "xrefs" : [ { - "val" : "OBO_REL:has_part" - } ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "cardinality", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "mereological quality", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "number of", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "number", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "has or lacks parts of type", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "extra or missing physical or functional parts", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "has number of" + "lbl" : "translucent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000228", + "id" : "http://purl.obolibrary.org/obo/PATO_0000022", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -30018,100 +30987,88 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete auditory" + "lbl" : "obsolete gametophytic compatability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002407", + "id" : "http://purl.obolibrary.org/obo/PATO_0000021", "meta" : { "definition" : { - "val" : "Having become firm or hard especially by increase of fibrous elements.", - "xrefs" : [ "mw:http://www.merriam-webster.com/dictionary/indurated" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to harmonious coexistence.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:49:11Z" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Needs redefined or obsoleted. Is this the same as genetic incompatibility? Moved to organismal quality." } ] }, "type" : "CLASS", - "lbl" : "indurated" + "lbl" : "compatibility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000227", + "id" : "http://purl.obolibrary.org/obo/PATO_0001355", "meta" : { + "definition" : { + "val" : "A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001857" } ] }, "type" : "CLASS", - "lbl" : "obsolete motor performance" + "lbl" : "convex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002408", + "id" : "http://purl.obolibrary.org/obo/PATO_0000024", "meta" : { - "definition" : { - "val" : "Having the consistency of water.", - "xrefs" : [ "PATOC:MPATH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:51:32Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "watery" + "lbl" : "obsolete sporophytic compatability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001558", + "id" : "http://purl.obolibrary.org/obo/PATO_0001352", "meta" : { "definition" : { - "val" : "A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A density quality which is equal to the mass exerting an influence on a one-dimensional object.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Linear_density" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "lacking processual parts" + "lbl" : "linear density" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002405", + "id" : "http://purl.obolibrary.org/obo/PATO_0001353", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's disposition to be reduced to smaller pieces with little effort.", - "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Friability" ] + "val" : "A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given volume.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Mass_density" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:47:16Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "friability" + "lbl" : "volumetric density" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000229", + "id" : "http://purl.obolibrary.org/obo/PATO_0000023", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -30122,18 +31079,18 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete olfactory" + "lbl" : "obsolete relative compatability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001559", + "id" : "http://purl.obolibrary.org/obo/PATO_0000037", "meta" : { "definition" : { - "val" : "A functionality quality which is held by the bearer when the latter is able to perform additional or different function(s).", - "xrefs" : [ "PATO:MAH" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's density, firmness, or viscosity.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "having supernumerary functions", + "pred" : "hasRelatedSynonym", + "val" : "firmness", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -30142,259 +31099,188 @@ } ] }, "type" : "CLASS", - "lbl" : "having extra function" + "lbl" : "consistency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002406", + "id" : "http://purl.obolibrary.org/obo/RO_0002264", "meta" : { "definition" : { - "val" : "Easily reduced to powder or easily fragmentable or crumbly.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "c acts upstream of or within p if c is enables 'p' and p' causally upstream of or within p", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:48:30Z" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of_or_within" } ] }, - "type" : "CLASS", - "lbl" : "friable" + "type" : "PROPERTY", + "lbl" : "acts upstream of or within" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001552", + "id" : "http://purl.obolibrary.org/obo/PATO_0001369", "meta" : { "definition" : { - "val" : "A sensitivity of a process which is lower than normal or average.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A shape quality inhering in a colony by virtue of the bearer's appearing above the medium surface with terraced edges.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low sensitivity of occurrent", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "decreased sensitivity of occurrent", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001551" } ] }, "type" : "CLASS", - "lbl" : "decreased sensitivity of a process" + "lbl" : "raised" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000220", + "id" : "http://purl.obolibrary.org/obo/PATO_0000036", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete regeneration" + "lbl" : "obsolete water content" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002400", + "id" : "http://purl.obolibrary.org/obo/PATO_0000039", "meta" : { "definition" : { - "val" : "Having a spindle-like shape that is wide in the middle and tapers at both ends.", - "xrefs" : [ "wikipedia:wikipedia" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's orientation in space.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-07T05:43:25Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: consider merging with angular placement." } ] }, "type" : "CLASS", - "lbl" : "fusiform" + "lbl" : "direction" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001553", + "id" : "http://purl.obolibrary.org/obo/PATO_0001367", "meta" : { "definition" : { - "val" : "A sensitivity of occurrent to oxygen which is higher than normal or average.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high sensitivity of occurrent to oxygen", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001554" } ] }, "type" : "CLASS", - "lbl" : "increased sensitivity of a process to oxygen" + "lbl" : "lobate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000222", + "id" : "http://purl.obolibrary.org/obo/PATO_0000038", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete muscle elevation" + "lbl" : "obsolete gel consistency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001550", + "id" : "http://purl.obolibrary.org/obo/PATO_0001368", "meta" : { "definition" : { - "val" : "A sensitivity toward an external stimulus which is lower than normal/average.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having an irregularly toothed edge.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low sensitivity toward", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "decreased sensitivity", + "pred" : "hasRelatedSynonym", + "val" : "jagged", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001549" } ] }, "type" : "CLASS", - "lbl" : "decreased sensitivity toward" + "lbl" : "erose" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000221", + "id" : "http://purl.obolibrary.org/obo/RO_0002263", "meta" : { + "definition" : { + "val" : "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Acts_upstream_of" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." } ] }, - "type" : "CLASS", - "lbl" : "obsolete urination" + "type" : "PROPERTY", + "lbl" : "acts upstream of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001551", + "id" : "http://purl.obolibrary.org/obo/PATO_0001361", "meta" : { "definition" : { - "val" : "A sensitivity of a process which is higher than normal or average.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A texture quality inhering in a bearer by virtue of the bearer's being covered with warts or projections that resemble warts resulting in a hard rough surface.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high sensitivity of occurrent", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "increased sensitivity of occurrent", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001552" } ] }, "type" : "CLASS", - "lbl" : "increased sensitivity of a process" + "lbl" : "warty" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0005488", + "id" : "http://purl.obolibrary.org/obo/PATO_0001362", "meta" : { "definition" : { - "val" : "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.", - "xrefs" : [ "GOC:ceb", "GOC:mah", "ISBN:0198506732" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's disposition to being easily damaged or destroyed.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], - "xrefs" : [ { - "val" : "Wikipedia:Binding_(molecular)" - } ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "ligand", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "molecular_function" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001716" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children." - } ] - }, - "type" : "CLASS", - "lbl" : "binding" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002414", - "meta" : { - "definition" : { - "val" : "A quality of duration having progressive course of indefinite duration with active, acute-like elements.", - "xrefs" : [ "PATOC:MPATH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:59:58Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "chronic-active" + "lbl" : "fragile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001567", + "id" : "http://purl.obolibrary.org/obo/PATO_0000031", "meta" : { - "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001566" } ] }, "type" : "CLASS", - "lbl" : "undistributed" + "lbl" : "obsolete metabolite composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000235", + "id" : "http://purl.obolibrary.org/obo/PATO_0000030", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -30405,183 +31291,137 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete odor_acuity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001568", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001624" - } ] - }, - "type" : "CLASS" + "lbl" : "obsolete enzyme composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002415", + "id" : "http://purl.obolibrary.org/obo/PATO_0001360", "meta" : { "definition" : { - "val" : "Single lesion with expansion into surrounding tissue.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having thin filamentous extensions at its edge.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T11:01:31Z" } ] }, "type" : "CLASS", - "lbl" : "focally extensive" + "lbl" : "filamentous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000234", + "id" : "http://purl.obolibrary.org/obo/PATO_0000033", "meta" : { + "definition" : { + "val" : "A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/concentration" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "concentration", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete visual" + "lbl" : "concentration of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002412", + "id" : "http://purl.obolibrary.org/obo/PATO_0001365", "meta" : { "definition" : { - "val" : "A color consisting of yellow and brown hue and low brightness.", + "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having spines, thorns or similar thin projections on its surface.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:56:22Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dark yellow brown" + "lbl" : "spiny" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002464", + "id" : "http://purl.obolibrary.org/obo/RO_0002258", "meta" : { + "definition" : { + "val" : "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002258" + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." - } ] - }, - "type" : "PROPERTY", - "lbl" : "helper property (not for use in curation)" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001565", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "developmentally_preceded_by" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000060" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - } ] - }, - "type" : "CLASS" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000237", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "In general you should not use this relation to make assertions - use one of the more specific relations below this one" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute odor_acuity" + "type" : "PROPERTY", + "lbl" : "developmentally preceded by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001566", + "id" : "http://purl.obolibrary.org/obo/PATO_0001366", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being small and resembling a point.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "diffuse", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "scattered", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001567" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001513" } ] }, "type" : "CLASS", - "lbl" : "distributed" + "lbl" : "punctiform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002413", + "id" : "http://purl.obolibrary.org/obo/PATO_0000032", "meta" : { - "definition" : { - "val" : "A color consisting of yellow and brown hue and high brightness.", - "xrefs" : [ "PATOC:GVG" ] - }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:57:27Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "light yellow brown" + "lbl" : "obsolete secondary product composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000236", + "id" : "http://purl.obolibrary.org/obo/PATO_0001363", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000404" } ] }, - "type" : "CLASS", - "lbl" : "obsolete odor type" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000239", + "id" : "http://purl.obolibrary.org/obo/PATO_0000035", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -30592,30 +31432,28 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete blinking reflex" + "lbl" : "obsolete carbohydrate concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002418", + "id" : "http://purl.obolibrary.org/obo/RO_0002259", + "type" : "PROPERTY", + "lbl" : "defined by inverse" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001364", "meta" : { "definition" : { - "val" : "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for acidic dyes under specific ph conditions.", + "val" : "A quality inhering in a bearer by virtue of the bearer's having root like extensions radiating from its center.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T03:01:19Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "acidophilic" + "lbl" : "rhizoidal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000238", + "id" : "http://purl.obolibrary.org/obo/PATO_0000034", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -30626,876 +31464,928 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative odor_acuity" + "lbl" : "obsolete protein concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002419", + "id" : "http://purl.obolibrary.org/obo/PATO_0002629", "meta" : { "definition" : { - "val" : "An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for eosin dye.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An intensity which is characterized by being very severe.", + "xrefs" : [ "PATO:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T03:02:09Z" + "val" : "2014-05-26T06:44:11Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "eosinophilic" + "lbl" : "profound intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002416", + "id" : "http://www.geneontology.org/formats/oboInOwl#hasSynonymType", + "type" : "PROPERTY", + "lbl" : "has_synonym_type" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002254", "meta" : { "definition" : { - "val" : "Flattened from above downward; below the normal level or the level of the surrounding parts.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "x has developmental contribution from y iff x has some part z such that z develops from y", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "xrefs" : [ { + "val" : "RO:0002254" + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T12:06:55Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_developmental_contribution_from" } ] }, - "type" : "CLASS", - "lbl" : "sunken" + "type" : "PROPERTY", + "lbl" : "has developmental contribution from" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001569", + "id" : "http://purl.obolibrary.org/obo/go#goslim_pombe", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0002001" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Fission yeast GO slim" } ] }, - "type" : "CLASS" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002417", + "id" : "http://purl.obolibrary.org/obo/RO_0002255", "meta" : { "definition" : { - "val" : "Extending through or affecting the entire thickness of the wall of an organ or cavity or boundary.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "inverse of has developmental contribution from", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "xrefs" : [ { + "val" : "RO:0002255" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "developmentally_contributes_to" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T02:16:18Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" } ] }, - "type" : "CLASS", - "lbl" : "transmural" + "type" : "PROPERTY", + "lbl" : "developmentally_contributes_to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001560", + "id" : "http://purl.obolibrary.org/obo/PATO_0002628", "meta" : { + "definition" : { + "val" : "An intensity which is borderline in it its effect or force as compared to baseline or normal.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0002002" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-05-26T06:42:21Z" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "borderline intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001563", + "id" : "http://purl.obolibrary.org/obo/PATO_0001309", "meta" : { "definition" : { - "val" : "A mass which is higher than normal or average.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point.", + "xrefs" : [ "PATOC:mellybelly" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high mass", + "pred" : "hasRelatedSynonym", + "val" : "time", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "large mass", + "val" : "period", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000081" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001562" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000578" } ] }, "type" : "CLASS", - "lbl" : "increased mass" + "lbl" : "duration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000231", + "id" : "http://purl.obolibrary.org/obo/PATO_0001303", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to varying or changing.", + "xrefs" : [ "Dictionary:http://dictionary.reference.com/" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "variability of a physical quality", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete reflex" + "lbl" : "variability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002410", + "id" : "http://purl.obolibrary.org/obo/PATO_0001304", "meta" : { "definition" : { - "val" : "A colour that is very pale yellowish brown.", - "xrefs" : [ "PATOC:MPATH" ] + "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits temperature variation or change.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:54:55Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "beige" + "lbl" : "variability of temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002411", + "id" : "http://purl.obolibrary.org/obo/PATO_0002632", "meta" : { "definition" : { - "val" : "A color consisting of yellow and brown hue.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality in which the effect or outcome is not primary or the focus of the observation.", + "xrefs" : [ "PATO:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "haendel" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-17T10:55:51Z" + "val" : "2014-05-26T13:17:45Z" } ] }, "type" : "CLASS", - "lbl" : "yellow brown" + "lbl" : "secondary" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001564", + "id" : "http://purl.obolibrary.org/obo/PATO_0001301", "meta" : { "definition" : { - "val" : "A quality of a process inhering in a bearer by virtue of the bearer's processual parts.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An optical quality that is the mixture, purity or pattern of wavelengths of light perceived by the observer.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "extra or missing processual parts" + "lbl" : "chromatic property" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000230", + "id" : "http://purl.obolibrary.org/obo/PATO_0001302", "meta" : { + "definition" : { + "val" : "A color consisting of red and orange hue with a slight amount of gray.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - 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"lbl" : "having extra processual parts" + "lbl" : "increased variability of temperature" }, { - "id" : "http://purl.obolibrary.org/obo/pato#is_measurement_of", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "pato.ontology" - } ] - }, - "type" : "PROPERTY", - "lbl" : "is_measurement_of" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000232", + "id" : "http://purl.obolibrary.org/obo/PATO_0001305", "meta" : { + "definition" : { + "val" : "A temperature which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hot", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "high temperature", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001306" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000678" } ] }, "type" : "CLASS", - "lbl" : "obsolete taste" + "lbl" : "increased temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001562", + "id" : "http://purl.obolibrary.org/obo/PATO_0001306", "meta" : { "definition" : { - "val" : "A mass which is lower than normal or average.", - "xrefs" : [ "PATO:GVG" ] + "val" : "A temperature which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low mass", + "val" : "cold", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "small mass", + "val" : "low temperature", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000677" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000579" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001563" + "val" : "http://purl.obolibrary.org/obo/PATO_0001305" } ] }, "type" : "CLASS", - "lbl" : "decreased mass" - }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0001010", - "type" : "CLASS", - "lbl" : "organism or virus or viroid" + "lbl" : "decreased temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000649", + "id" : "http://purl.obolibrary.org/obo/PATO_0002630", "meta" : { + "definition" : { + "val" : "An occurrence quality inhering in a bearer by virtue of the bearer's having a course that occurs occasionally.", + "xrefs" : [ "PATO:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0002112" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-05-26T06:50:16Z" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "episodic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000642", + "id" : "http://purl.obolibrary.org/obo/PATO_0002631", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An occurrence of a process during which time there is an inability to change the course, extent, or repetition of the process.", + "xrefs" : [ "PATO:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "merged with", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "fused to", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "fused", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "joined with", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "coalesced", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000651" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "haendel" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-05-26T13:09:29Z" } ] }, "type" : "CLASS", - "lbl" : "fused with" + "lbl" : "refractory" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001974", + "id" : "http://purl.obolibrary.org/obo/PATO_0001300", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's terminating in a round end, the centre of which is depressed.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "retuse" + "lbl" : "optical quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000641", + "id" : "http://purl.obolibrary.org/obo/PATO_0001314", "meta" : { + "definition" : { + "val" : "A variability quality inhering in a bearer by virtue of the bearer's having or exhibiting variation of temperature.", + "xrefs" : [ "PATO:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001313" } ] }, "type" : "CLASS", - "lbl" : "obsolete deposition defective" + "lbl" : "variant temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001975", + "id" : "http://purl.obolibrary.org/obo/PATO_0001315", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's lacking sharp straight-edged teeth pointing to the apex.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "A temperature which is increased by a low degree.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - 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"xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "overdeveloped", + "val" : "high duration of temperature", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000943" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000645" + "val" : "http://purl.obolibrary.org/obo/PATO_0001311" } ] }, "type" : "CLASS", - "lbl" : "hyperplastic" + "lbl" : "increased duration of temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001972", + "id" : "http://purl.obolibrary.org/obo/RO_0002233", "meta" : { "definition" : { - "val" : "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches branching into a reticulum toward the margin.", - "xrefs" : [ "Hickey:1988" ] + "val" : "p has direct input c iff c is a participant in p, c is present at the start of p, and the state of c is modified during p.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "consumes" } ] }, - "type" : "CLASS", - "lbl" : "reticulodromous" + "type" : "PROPERTY", + "lbl" : "has input" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000643", + "id" : "http://purl.obolibrary.org/obo/PATO_0001313", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's bodily structure that has protruded through an abnormal opening in the wall that contains it.", - "xrefs" : [ "spinalstenosis:spinalstenosis" ] + "val" : "A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of temperature.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001314" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "herniated" + "lbl" : "invariant temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001973", + "id" : "http://purl.obolibrary.org/obo/RO_0002234", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being tapering gradually into a rigid point.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - 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"synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "incised", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001319" } ] }, "type" : "CLASS", - "lbl" : "cut" + "lbl" : "indiscriminate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000646", + "id" : "http://purl.obolibrary.org/obo/PATO_0001319", "meta" : { "definition" : { - "val" : "A morphological quality inhering in a bearer by virtue of the bearer's being distorted during formation.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A discrimination quality in a bearer by virtue of the bearer's being capable of perceiving differences between two or more stimuli.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "malformation", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001318" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "malformed" + "lbl" : "discriminate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001979", + "id" : "http://purl.obolibrary.org/obo/PATO_0001316", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being partly divided into a determinate number of regions.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "A temperature which is increased by a medium degree.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "lobed" + "lbl" : "moderate increased temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000645", + "id" : "http://purl.obolibrary.org/obo/PATO_0001317", "meta" : { "definition" : { - "val" : "A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue.", + "val" : "A temperature which is increased by a high degree.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "underdeveloped", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "hypoplasia", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000644" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000942" } ] }, "type" : "CLASS", - "lbl" : "hypoplastic" + "lbl" : "severe increased temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001976", + "id" : "http://purl.obolibrary.org/obo/PATO_0001310", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having or lacking sharp straight-edged teeth pointing to the apex.", + "val" : "A duration quality of a process inhering in a bearer by virtue of the bearer's duration of exhibition of thermal energy.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: obsolete? I don't know what this means." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "serration" + "lbl" : "duration of temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000648", + "id" : "http://purl.obolibrary.org/obo/PATO_0001311", "meta" : { "definition" : { - "val" : "A morphological quality inhering in a bearer by virtue of the bearer's being blocked or filled with obstacles or an obstacle.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A duration of temperature which is lesser relative to the normal or average enduring or continuing in time.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001312" } ] }, "type" : "CLASS", - "lbl" : "obstructed" + "lbl" : "decreased duration of temperature" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002450", + "id" : "http://purl.obolibrary.org/obo/PATO_0001325", "meta" : { "definition" : { - "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.", - "xrefs" : [ ] + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's having equal proportion around a central point or axis.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "molecularly increases activity of", - "xrefs" : [ ] + "val" : "centric", + "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0002-2908-3327" ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "activates" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "activity directly positively regulates activity of" + "type" : "CLASS", + "lbl" : "radial symmetry" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001977", + "id" : "http://purl.obolibrary.org/obo/PATO_0001326", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having at least one salient angle on the margin.", - "xrefs" : [ "PATOC:GVG" ] - }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "angulate", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "angular" + "lbl" : "obsolete left-right symmetry" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000647", + "id" : "http://purl.obolibrary.org/obo/PATO_0001323", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's undergoing unprogrammed cell death.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Necrotic" ] + "val" : "A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Area" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "necrotic" + "lbl" : "area" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002448", + "id" : "http://purl.obolibrary.org/obo/RO_0002222", "meta" : { - "definition" : { - "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.", - "xrefs" : [ ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "molecularly controls", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "https://en.wikipedia.org/wiki/Allen%27s_interval_algebra" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." + }, { + "pred" : "http://purl.org/dc/elements/1.1/source", + "val" : "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1" + }, { + "pred" : "http://purl.org/dc/terms/source", + "val" : "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, "type" : "PROPERTY", - "lbl" : "activity directly regulates activity of" + "lbl" : "temporally related to" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002449", + "id" : "http://purl.obolibrary.org/obo/PATO_0001324", "meta" : { "definition" : { - "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.", - "xrefs" : [ ] + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being symmetric about a plane running from its frontal end to its caudal end (head to tail), and has nearly identical right and left halves.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Bilateral_symmetry" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "molecularly decreases activity of", + "val" : "left-right symmetry", "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "pennate", + "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0002-2908-3327" ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "inhibits" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "activity directly negatively regulates activity of" + "type" : "CLASS", + "lbl" : "bilateral symmetry" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001970", + "id" : "http://purl.obolibrary.org/obo/PATO_0001329", "meta" : { "definition" : { - "val" : "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches joined together in a series of prominent arches.", - "xrefs" : [ "Hickey:1988" ] + "val" : "A flavor quality inhering in a bearer by virtue of the bearer's having flavour.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "brochidodromous" + "lbl" : "flavourful" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001971", + "id" : "http://purl.obolibrary.org/obo/PATO_0001327", "meta" : { "definition" : { - "val" : "A branched quality inhering in a bearer by virtue of the bearer's having secondary branches freely branching toward the margin.", - "xrefs" : [ "Hickey:1988" ] + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by only one longitudinal plane passing through the axis.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cladodromous" + "lbl" : "zygomorphic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000640", + "id" : "http://purl.obolibrary.org/obo/PATO_0001328", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's exhibiting an alteration in size, shape or organization of its constituent cells.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's being capable of division into symmetrical halves by any longitudinal plane passing through the axis.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "dysplasia", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dysplastic" + "lbl" : "actinomorphic" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002447", + "id" : "http://purl.obolibrary.org/obo/RO_0002217", "meta" : { + "definition" : { + "val" : "x actively participates in y if and only if x participates in y and x realizes some active role", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Axiomatization to GO to be added later" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "agent in" } ] }, "type" : "PROPERTY", - "lbl" : "phosphorylates" + "lbl" : "actively participates in" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000116", + "id" : "http://purl.obolibrary.org/obo/RO_0002218", "meta" : { + "definition" : { + "val" : "x has participant y if and only if x realizes some active role that inheres in y", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This may be obsoleted and replaced by the original 'has agent' relation" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has agent" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'heart development' has active participant some Shh protein" } ] }, "type" : "PROPERTY", - "lbl" : "editor note" + "lbl" : "has active participant" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000117", + "id" : "http://purl.obolibrary.org/obo/RO_0002213", "meta" : { + "definition" : { + "val" : "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002213" + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" - } ] - }, - "type" : "PROPERTY", - "lbl" : "term editor" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000114", - "type" : "PROPERTY", - "lbl" : "has curation status" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000115", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" - } ] - }, - "type" : "PROPERTY", - "lbl" : "definition" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000112", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "positively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "positively_regulates" } ] }, "type" : "PROPERTY", - "lbl" : "example of usage" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000111", - "type" : "PROPERTY", - "lbl" : "editor preferred term" + "lbl" : "positively regulates" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001509", + "id" : "http://purl.obolibrary.org/obo/PATO_0001321", "meta" : { "definition" : { - "val" : "A quality of a single physical entity that arises by virtue of whether the bearer exhibits the ability to perform a regular function(s).", - "xrefs" : [ "PATOC:MAH" ] + "val" : "An angle which is 90 degrees to another entity.", + "xrefs" : [ "thesaurus.math:thesaurus.math" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "functionality" + "lbl" : "right angle to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001507", + "id" : "http://purl.obolibrary.org/obo/PATO_0001322", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's being interrupted of its normal course.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An angle which is 180 degrees to another entity.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: decide on correct parentage." } ] }, "type" : "CLASS", - "lbl" : "disrupted" + "lbl" : "straight angle to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001508", + "id" : "http://purl.obolibrary.org/obo/RO_0002215", "meta" : { + "definition" : { + "val" : "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. ", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "xrefs" : [ { + "val" : "RO:0002215" + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000297" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/21208450" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000118", - "meta" : { - "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has function realized in" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "capable_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "osteoclast SubClassOf 'capable of' some 'bone resorption'" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "RO_0000053 some (RO_0000054 only ?Y)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20123131" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, "type" : "PROPERTY", - "lbl" : "alternative term" - }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000119", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000122" - } ] - }, - "type" : "PROPERTY", - "lbl" : "definition source" + "lbl" : "capable of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001985", + "id" : "http://purl.obolibrary.org/obo/PATO_0001320", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being kept below its freezing point.", - "xrefs" : [ "OBI:OBI" ] + "val" : "A pilosity quality of being covered with short hairs or soft down.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -31504,45 +32394,57 @@ } ] }, "type" : "CLASS", - "lbl" : "frozen" + "lbl" : "pubescent hair" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001501", + "id" : "http://purl.obolibrary.org/obo/RO_0002216", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development.", - "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "underdeveloped", + "val" : "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.", "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002216" } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001701" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has function in" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "capable_of_part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000424", + "val" : "RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y))" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" } ] }, - "type" : "CLASS", - "lbl" : "immature" + "type" : "PROPERTY", + "lbl" : "capable of part of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000653", + "id" : "http://purl.obolibrary.org/obo/PATO_0000884", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete addictive substance value" + "lbl" : "obsolete hybrid fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000652", + "id" : "http://purl.obolibrary.org/obo/PATO_0000883", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -31553,166 +32455,261 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete substance value" + "lbl" : "obsolete female fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001986", + "id" : "http://purl.obolibrary.org/obo/RO_0002211", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's passing into solution.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "xrefs" : [ { + "val" : "RO:0002211" + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000600", + "val" : "false" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "external" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Tanya Berardini" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Hill" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Regulation precludes parthood; the regulatory process may not be within the regulated process." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GO" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "regulates (processual)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We use 'regulates' here to specifically imply control. However, many colloquial usages of the term correctly correspond to the weaker relation of 'causally upstream of or within' (aka influences). Consider relabeling to make things more explicit" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "regulates" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "dissolved" + "type" : "PROPERTY", + "lbl" : "regulates" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001502", + "id" : "http://purl.obolibrary.org/obo/PATO_0000886", "meta" : { - "definition" : { - "val" : "A monadic quality of continuant inhering in a bearer by virtue of the bearer's being intricate and compounded.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "TODO: obsolete this." + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "complexity" + "lbl" : "obsolete absolute litter size value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000655", + "id" : "http://purl.obolibrary.org/obo/RO_0002212", "meta" : { + "definition" : { + "val" : "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2.", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002212" + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "external" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "negatively_regulates" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "negatively regulates (process to process)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] + }, + "type" : "PROPERTY", + "lbl" : "negatively regulates" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000885", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete amphetamine value" + "lbl" : "obsolete male fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001983", + "id" : "http://purl.obolibrary.org/obo/PATO_0000888", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's two basal lobes being united together.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000892" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "perfoliate" + "lbl" : "female fertile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000654", + "id" : "http://purl.obolibrary.org/obo/PATO_0000887", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete alcochol value" + "lbl" : "obsolete relative litter size value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001500", + "id" : "http://purl.obolibrary.org/obo/PATO_0000889", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being gradually narrower or thinner toward one end.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "taper", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "tapered" + "lbl" : "obsolete cytoplasmic male sterility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001984", + "id" : "http://purl.obolibrary.org/obo/RO_0002202", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being prolonged below the point of insertion.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "xrefs" : [ { + "val" : "RO:0002202" + } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This is the transitive form of the develops from relation" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "develops_from" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" } ] }, - "type" : "CLASS", - "lbl" : "decurrent" + "type" : "PROPERTY", + "lbl" : "develops from" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001989", + "id" : "http://purl.obolibrary.org/obo/PATO_0000880", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's having many curves and turns.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "twisted", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "sinuous" + "lbl" : "obsolete fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001505", + "id" : "http://purl.obolibrary.org/obo/RO_0002203", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's not being in contact with another entity, or of no longer being connected or joined with another entity.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "divided_from", + "val" : "inverse of develops from", "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], + "xrefs" : [ { + "val" : "RO:0002203" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "develops_into" }, { - "pred" : "hasRelatedSynonym", - "val" : "discontiguous", - "xrefs" : [ ] + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "hasRelatedSynonym", - "val" : "splitted from", - "xrefs" : [ ] - } ], + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "David Osumi-Sutherland" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Terry Meehan" + } ] + }, + "type" : "PROPERTY", + "lbl" : "develops into" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000882", + "meta" : { "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "separated from" + "lbl" : "obsolete litter size value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000657", + "id" : "http://purl.obolibrary.org/obo/PATO_0000881", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -31723,24 +32720,26 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete length_quantity" + "lbl" : "obsolete gestational period value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001506", + "id" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's separation of normally joined parts, such as the separation of adjacent bones without fracture or of certain abdominal muscles during pregnancy.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "diastatic" + "type" : "PROPERTY", + "lbl" : "reciprocal_of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000656", + "id" : "http://purl.obolibrary.org/obo/PATO_0000895", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -31751,9 +32750,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete time_quantity" + "lbl" : "obsolete f1 fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000659", + "id" : "http://purl.obolibrary.org/obo/PATO_0000894", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -31764,299 +32763,237 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete temparature_quantity" + "lbl" : "obsolete cytoplasmic sterility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001503", + "id" : "http://purl.obolibrary.org/obo/PATO_0000897", "meta" : { - "definition" : { - "val" : "A complexity quality in a bearer by virtue of the bearer's having few parts or being complicated or compound.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "simple" + "lbl" : "obsolete germ line dependent fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001987", + "id" : "http://purl.obolibrary.org/obo/PATO_0000896", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's having a three dimensional cavity with a narrow or no opening, and often containing an anatomical substance.", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "sacular", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "saccular" + "lbl" : "obsolete f2 fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001504", + "id" : "http://purl.obolibrary.org/obo/PATO_0000899", "meta" : { - "definition" : { - "val" : "A complexity quality inhering in a bearer by virtue of the bearer's being intricate and compounded.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "complex" + "lbl" : "obsolete soma dependent fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000658", + "id" : "http://purl.obolibrary.org/obo/PATO_0000898", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete metamphetamine value" + "lbl" : "obsolete intercross fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001988", + "id" : "http://purl.obolibrary.org/obo/PATO_0000891", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having four angles and four sides.", - "xrefs" : [ "url:http://www.oed.com/" ] + "val" : "A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000890" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "quadrangular" + "lbl" : "male fertile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001981", + "id" : "http://purl.obolibrary.org/obo/PATO_0000890", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a shape resembling an ear.", - "xrefs" : [ "url:http://www.thefreedictionary.com/auriculate" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "auriculate" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002434", - "meta" : { - "definition" : { - "val" : "A relationship that holds between two entities in which the processes executed by the two entities are causally connected.", - "xrefs" : [ ] + "val" : "A male fertility quality inhering in a male by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "in pairwise interaction with", + "pred" : "hasRelatedSynonym", + "val" : "male infertile", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://purl.obolibrary.org/obo/MI_0914" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Considering relabeling as 'pairwise interacts with'" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." - }, { - "pred" : "http://xmlns.com/foaf/0.1/page", - "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000891" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "interacts with" + "type" : "CLASS", + "lbl" : "male sterile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001982", + "id" : "http://purl.obolibrary.org/obo/PATO_0000893", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's gradually tapering to a slender point.", - "xrefs" : [ "url:http://www.thefreedictionary.com/attenuate" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "attenuate" + "lbl" : "obsolete backcross fertility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000651", + "id" : "http://purl.obolibrary.org/obo/PATO_0000892", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity.", - "xrefs" : [ "PATOC:nw" ] + "val" : "A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "unfused", + "pred" : "hasRelatedSynonym", + "val" : "female infertile", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000642" + "val" : "http://purl.obolibrary.org/obo/PATO_0000888" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "unfused from" + "lbl" : "female sterile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001980", + "id" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "type" : "PROPERTY", + "lbl" : "has_obo_namespace" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_40674", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having distinct parts arising from a common point or center.", - "xrefs" : [ "thefreedictionary:thefreedictionary" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "mammals", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "mammals", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "digitate" + "lbl" : "Mammalia" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002436", + "id" : "http://purl.obolibrary.org/obo/GO_0060089", "meta" : { "definition" : { - "val" : "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.", - "xrefs" : [ ] + "val" : "A compound molecular function in which an effector function is controlled by one or more regulatory components.", + "xrefs" : [ "GOC:dos", "GOC:pdt" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate", "http://purl.obolibrary.org/obo/go#goslim_pir" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "molecularly binds with" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://purl.obolibrary.org/obo/ECO_0000353" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://purl.obolibrary.org/obo/MI_0915" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "binds" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" } ] }, - "type" : "PROPERTY", - "lbl" : "molecularly interacts with" + "type" : "CLASS", + "lbl" : "molecular transducer activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000650", + "id" : "http://purl.obolibrary.org/obo/PATO_0000848", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000470" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete relative auditory acuity" }, { - "id" : "http://purl.obolibrary.org/obo/IAO_0000125", + "id" : "http://purl.obolibrary.org/obo/PATO_0000847", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "INDIVIDUAL", - "lbl" : "pending final vetting" + "type" : "CLASS", + "lbl" : "obsolete absolute auditory acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001518", + "id" : "http://purl.obolibrary.org/obo/PATO_0000849", "meta" : { - "definition" : { - "val" : "An optical quality inhering in a bearer by virtue of the bearer's lacking focus.", - "xrefs" : [ "PATOC:NC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "blurry" + "lbl" : "obsolete absolute auditory ability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001519", + "id" : "http://purl.obolibrary.org/obo/PATO_0000840", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of vibration, as perceived by the sense of hearing.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sound_quality" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "sound quality" + "lbl" : "obsolete absolute auditory acuity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001512", + "id" : "http://purl.obolibrary.org/obo/PATO_0000842", "meta" : { - "definition" : { - "val" : "A pattern inhering in a surface by virtue of the bearer's being marked by the presence of dots, punctures, points or pits.", - "xrefs" : [ "medical-dictionary:medical-dictionary" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "stippled", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "spotted", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "dotted", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "punctate" + "lbl" : "obsolete absolute auditory threshold value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000664", + "id" : "http://purl.obolibrary.org/obo/PATO_0000841", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -32067,86 +33004,61 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete substance_quantity" + "lbl" : "obsolete relative auditory acuity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001996", + "id" : "http://purl.obolibrary.org/obo/PATO_0000844", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000462" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete auditory acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001997", + "id" : "http://purl.obolibrary.org/obo/PATO_0000843", "meta" : { - "definition" : { - "val" : "An amount which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "present in fewer numbers in organism", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "decreased", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "subnumerary", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "reduced", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "decreased number", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000468" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000470" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative auditory threshold value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000846", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000419" } ] }, "type" : "CLASS", - "lbl" : "decreased amount" + "lbl" : "obsolete auditory threshold" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002430", + "id" : "http://purl.obolibrary.org/obo/PATO_0000845", "meta" : { - "definition" : { - "val" : "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0004050", - "val" : "http://purl.obolibrary.org/obo/RO_0002428" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "involved in negative regulation of" + "type" : "CLASS", + "lbl" : "obsolete auditory ability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000663", + "id" : "http://purl.obolibrary.org/obo/PATO_0000859", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -32157,208 +33069,140 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete occurrent" + "lbl" : "obsolete pinna reflex value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001513", + "id" : "http://purl.obolibrary.org/obo/PATO_0000858", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001566" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete ocular reflex value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000666", + "id" : "http://purl.obolibrary.org/obo/PATO_0000851", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete energy_quantity" + "lbl" : "obsolete absolute auditory threshold" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002431", + "id" : "http://purl.obolibrary.org/obo/PATO_0000850", "meta" : { - "definition" : { - "val" : "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "involved in or reguates" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "OWL does not allow defining object properties via a Union" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "PROPERTY", - "lbl" : "involved in or involved in regulation of" + "type" : "CLASS", + "lbl" : "obsolete relative auditory ability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001510", + "id" : "http://purl.obolibrary.org/obo/PATO_0000853", "meta" : { - "definition" : { - "val" : "A functionality quality held by the bearer when the latter is able to perform a regular function(s).", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001511" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "functional" + "lbl" : "obsolete blinking reflex value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001994", + "id" : "http://purl.obolibrary.org/obo/PATO_0000852", "meta" : { - "definition" : { - "val" : "A cellularity quality inhering in a bearer by virtue of the bearer's consisting of exactly one cell.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "unicellular" + "lbl" : "obsolete relative auditory threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000665", + "id" : "http://purl.obolibrary.org/obo/PATO_0000855", "meta" : { - "definition" : { - "val" : "A color brightness which is relatively high.", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "light", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000327" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "high brightness" + "lbl" : "obsolete corneal reflex value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001511", + "id" : "http://purl.obolibrary.org/obo/PATO_0000854", "meta" : { - "definition" : { - "val" : "A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s).", - "xrefs" : [ "PATC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "defective", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "functional failure", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "disfunctional", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "failure", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001640" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - 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However, it is not clear if these terms should even remain in PATO." + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "conspicuousness" + "lbl" : "obsolete righting reflex value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001514", + "id" : "http://purl.obolibrary.org/obo/PATO_0000866", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer.", - "xrefs" : [ "PATOC:cjm" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "delaminated" + "lbl" : "obsolete suckling reflex value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001999", + "id" : "http://purl.obolibrary.org/obo/PATO_0000865", "meta" : { - "definition" : { - "val" : "The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. 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When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code \"no data\" (ND), is used to indicate this." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0044699" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "janelomax" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0007582" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0000004" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "biological_process" + "lbl" : "obsolete irritable" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002428", + "id" : "http://purl.obolibrary.org/obo/PATO_0000874", "meta" : { - "definition" : { - "val" : "c involved in regulation of p if c is involved in some p' and p' regulates some p", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "PROPERTY", - "lbl" : "involved in regulation of" + "type" : "CLASS", + "lbl" : "obsolete fearful" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002429", + "id" : "http://purl.obolibrary.org/obo/PATO_0000877", "meta" : { - "definition" : { - "val" : "c involved in regulation of p if c is involved in some p' and p' positively regulates some p", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0004049", - "val" : "http://purl.obolibrary.org/obo/RO_0002428" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "involved in positive regulation of" + "type" : "CLASS", + "lbl" : "obsolete absolute respiratory rate value" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0045937", + "id" : "http://purl.obolibrary.org/obo/PATO_0000876", "meta" : { - "definition" : { - "val" : "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates.", - "xrefs" : [ "GOC:go_curators" ] - }, - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "activation of phosphate metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "upregulation of phosphate metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "stimulation of phosphate metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "up-regulation of phosphate metabolic process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "positive regulation of phosphate metabolism", - "xrefs" : [ ] + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "hasExactSynonym", - "val" : "up regulation of phosphate metabolic process", - "xrefs" : [ ] - } ], + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete respiratory rate value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000879", + "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "positive regulation of phosphate metabolic process" + "lbl" : "obsolete fecundity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001992", + "id" : "http://purl.obolibrary.org/obo/PATO_0000878", "meta" : { - "definition" : { - "val" : "An organismal quality inhering in a bearer by virtue of the bearer's consisting cells.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cellularity" + "lbl" : "obsolete relative respiratory rate value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000660", + "id" : "http://purl.obolibrary.org/obo/PATO_0000871", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -32742,24 +33466,33 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete angle_quantity" + "lbl" : "obsolete aggressive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001993", + "id" : "http://purl.obolibrary.org/obo/PATO_0000870", "meta" : { - "definition" : { - "val" : "A cellularity quality inhering in a bearer by virtue of the bearer's consisting of more than one cell.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "multicellular" + "lbl" : "obsolete relative neurobehavioral function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000662", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_1437010", + "meta" : { + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "Boreotheria", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Boreoeutheria" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000804", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -32770,41 +33503,60 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete volume_quantity" + "lbl" : "obsolete motor performance value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001990", + "id" : "http://purl.obolibrary.org/obo/PATO_0040023", "meta" : { "definition" : { - "val" : "A duration quality of a process inhering in a disease by virtue of the bearer's duration of an impairment of health or of a condition of abnormal functioning.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body.", + "xrefs" : [ "https://en.wiktionary.org/wiki/distomedial" ] }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "distomedial", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "disto-medial orientation", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "MAH: I think this term should be obsoleted. Is it used?" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-19T21:54:33Z" } ] }, "type" : "CLASS", - "lbl" : "duration of disease" + "lbl" : "distomedial orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001991", + "id" : "http://purl.obolibrary.org/obo/PATO_0040024", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to being capable of indefinite growth or division.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "paired", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "immortal" + "lbl" : "bilaterally paired" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000661", + "id" : "http://purl.obolibrary.org/obo/PATO_0000803", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -32815,69 +33567,72 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete solid substance value" + "lbl" : "obsolete tactile response value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001529", + "id" : "http://purl.obolibrary.org/obo/PATO_0000806", "meta" : { - "definition" : { - "val" : "A spatiotemporal quality inhering in a cell.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "cellular spatiotemporal quality" + "lbl" : "obsolete olfactory value" }, { - "id" : "http://purl.obolibrary.org/obo/pato#has_cross_section", + "id" : "http://purl.obolibrary.org/obo/PATO_0040021", "meta" : { "definition" : { - "val" : "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism..", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round." + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "has_cross_section" + "type" : "CLASS", + "lbl" : "unpaired" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001523", + "id" : "http://purl.obolibrary.org/obo/PATO_0000805", "meta" : { - "definition" : { - "val" : "A physical quality which is equal to the quotient of the speed of a sound wave divided by its wavelength.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sound_wavelength" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sound wavelength" + "lbl" : "obsolete auditory value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000675", + "id" : "http://purl.obolibrary.org/obo/PATO_0040022", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-19T21:49:07Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete body temperature value" + "lbl" : "flared" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000674", + "id" : "http://purl.obolibrary.org/obo/PATO_0000808", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -32888,74 +33643,77 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute temperature value" + "lbl" : "obsolete reflex value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001524", + "id" : "http://purl.obolibrary.org/obo/PATO_0000807", "meta" : { - "definition" : { - "val" : "A sound frequency in the range of 0-20 Hz.", - "xrefs" : [ "studyphysics:studyphysics" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "intrasonic" + "lbl" : "obsolete proprioreception value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000677", + "id" : "http://purl.obolibrary.org/obo/PATO_0040025", "meta" : { + "definition" : { + "val" : "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present.", + "xrefs" : [ "NCIT:C3824" ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001306" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "lesioned" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001521", + "id" : "http://purl.obolibrary.org/obo/PATO_0040026", "meta" : { "definition" : { - "val" : "A physical quality inhering in a sound wave by virtue of the maximum magnitude (value without regard to sign) of its disturbance.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being marked by interruptions or gaps.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { - "pred" : "hasBroadSynonym", - "val" : "loudness", + "pred" : "hasExactSynonym", + "val" : "structurally interrupted", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is intended for use for terms such as MP:0010461 discontinuous pulmonary artery and MP:0004157 interrupted aortic arch." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sound amplitude" + "lbl" : "structurally discontinuous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001522", + "id" : "http://purl.obolibrary.org/obo/PATO_0000809", "meta" : { - "definition" : { - "val" : "A physical quality inhering in sound by virtue of the bearer's travelling speed in a given medium under specified conditions.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sound_speed" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sound speed" + "lbl" : "obsolete taste value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000676", + "id" : "http://purl.obolibrary.org/obo/PATO_0000800", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -32966,122 +33724,109 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative temperature value" + "lbl" : "obsolete muscle strength value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000679", + "id" : "http://purl.obolibrary.org/obo/PATO_0000802", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete temporal value" + "lbl" : "obsolete sensory function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001527", + "id" : "http://purl.obolibrary.org/obo/PATO_0000801", "meta" : { - "definition" : { - "val" : "A sound amplitude which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "quiet" + "lbl" : "obsolete motor function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000678", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001528", + "id" : "http://purl.obolibrary.org/obo/GO_0016740", "meta" : { "definition" : { - "val" : "A sound amplitude which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.", + "xrefs" : [ "ISBN:0198506732" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_yeast" ], + "xrefs" : [ { + "val" : "Reactome:R-HSA-1483089" + }, { + "val" : "Reactome:R-HSA-1483186" + }, { + "val" : "Reactome:R-HSA-5668414" + }, { + "val" : "Reactome:R-HSA-8868783" + }, { + "val" : "Reactome:R-HSA-6787403" + }, { + "val" : "EC:2" + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "molecular_function" } ] }, "type" : "CLASS", - "lbl" : "loud" + "lbl" : "transferase activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001525", + "id" : "http://purl.obolibrary.org/obo/PATO_0040020", "meta" : { "definition" : { - "val" : "A sound frequency in the range of 20 to 20.000 Hz.", - "xrefs" : [ "url:http://www.studyphysics.ca/" ] + "val" : "Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-16T22:52:49Z" } ] }, "type" : "CLASS", - "lbl" : "sonic" + "lbl" : "spayed female" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001526", + "id" : "http://purl.obolibrary.org/obo/PATO_0000815", "meta" : { - "definition" : { - "val" : "A sound frequency in the range of 20 000 + Hz.", - "xrefs" : [ "studyphysics:studyphysics" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "ultrasonic" + "lbl" : "obsolete absolute odor acuity value" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002418", + "id" : "http://purl.obolibrary.org/obo/PATO_0000814", "meta" : { - "definition" : { - "val" : "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; 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In addition, the output of p must be an input of q.", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002575", - "val" : "http://purl.obolibrary.org/obo/RO_0002411" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "PROPERTY", - "lbl" : "immediately causally upstream of" + "type" : "CLASS", + "lbl" : "obsolete quantity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001520", + "id" : "http://purl.obolibrary.org/obo/PATO_0000818", "meta" : { - "definition" : { - "val" : "The frequency of transmitted vibrations.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "sound frequency" + "lbl" : "obsolete concentration_quantity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000670", + "id" : "http://purl.obolibrary.org/obo/PATO_0000811", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -33157,9 +33889,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete saccharin versus water value" + "lbl" : "obsolete visual value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000673", + "id" : "http://purl.obolibrary.org/obo/PATO_0000810", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -33170,9 +33902,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete temperature value" + "lbl" : "obsolete touch value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000672", + "id" : "http://purl.obolibrary.org/obo/PATO_0000813", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete odor type value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000812", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -33183,47 +33928,69 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete unit" + "lbl" : "obsolete odor acuity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001938", + "id" : "http://purl.obolibrary.org/obo/PATO_0040001", "meta" : { "definition" : { - "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's being oval and a little angular in the middle.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "Shaped like a ring", + "xrefs" : [ "https://orcid.org/0000-0002-6601-2165" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "annular", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-05-24T03:56:53Z" } ] }, "type" : "CLASS", - "lbl" : "rhomboid" + "lbl" : "ring-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000606", + "id" : "http://purl.obolibrary.org/obo/PATO_0000826", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute angle value" + "lbl" : "obsolete visual acuity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000605", + "id" : "http://purl.obolibrary.org/obo/PATO_0040002", "meta" : { - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "position", + "definition" : { + "val" : "A positional quality inhering in a bearer by virtue of some aspect of that bearer beginning from a position on another entity.", "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-05-24T04:10:53Z" }, { - "pred" : "hasRelatedSynonym", - "val" : "location", - "xrefs" : [ ] - } ], + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "originates from" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000825", + "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -33233,205 +34000,193 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete placement value" + "lbl" : "obsolete visual ability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001939", + "id" : "http://purl.obolibrary.org/obo/PATO_0000828", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - 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"val" : "A shape quality inhering in a bearer by virtue of the bearer's being oblong, with the lower end very much attenuated.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "spathulate", + "val" : "posteroventrally oriented", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T22:54:16Z" } ] }, "type" : "CLASS", - "lbl" : "spatulate" + "lbl" : "posteroventral orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000607", + "id" : "http://purl.obolibrary.org/obo/PATO_0040006", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] + }, "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:09:59Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - 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"val" : "A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The ability of a pathogen to produce an infectious disease or disorder in an another organism.", + "xrefs" : [ "https://orcid.org/0000-0001-8941-3984" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001931" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-08-02T04:24:52Z" } ] }, "type" : "CLASS", - "lbl" : "variant shape" + "lbl" : "pathogenicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001931", + "id" : "http://purl.obolibrary.org/obo/PATO_0040004", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation of shape.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness.", + "xrefs" : [ "https://orcid.org/0000-0001-5208-3432", "https://orcid.org/0000-0003-4606-0597" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001930" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-08-02T04:39:30Z" } ] }, "type" : "CLASS", - "lbl" : "invariant shape" + "lbl" : "plush" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000600", + "id" : "http://purl.obolibrary.org/obo/PATO_0040009", "meta" : { "definition" : { - "val" : "A width which is relatively large.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "wide/broad", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "broad", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "wide", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000599" + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:17:01Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased width" + "lbl" : "bowl shaped" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002410", + "id" : "http://purl.obolibrary.org/obo/PATO_0040007", "meta" : { "definition" : { - "val" : "This relation groups causal relations between material entities and causal relations between processes", - "xrefs" : [ ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:12:47Z" } ] }, - "type" : "PROPERTY", - "lbl" : "causally related to" + "type" : "CLASS", + "lbl" : "shell shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000602", + "id" : "http://purl.obolibrary.org/obo/PATO_0000820", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -33442,24 +34197,29 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete angle value" + "lbl" : "obsolete absolute taste acuity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001934", + "id" : "http://purl.obolibrary.org/obo/PATO_0040008", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being perfectly circular.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490", "https://www.merriam-webster.com/dictionary/fringe" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:15:10Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "orbicular" + "lbl" : "fringed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000601", + "id" : "http://purl.obolibrary.org/obo/PATO_0000822", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -33470,29 +34230,35 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete spatial value" + "lbl" : "obsolete taste type value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001935", + "id" : "http://purl.obolibrary.org/obo/PATO_0000821", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being roundish, a little inclining to be oblong.", - "xrefs" : [ "ISBN:0881923214" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "roundish", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obtuse" + "lbl" : "obsolete relative taste acuity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000604", + "id" : "http://purl.obolibrary.org/obo/PATO_0000824", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete water taste" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000823", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -33503,834 +34269,768 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete orientation value" + "lbl" : "obsolete quinine taste" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001932", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_33511", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "deuterostomes", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Deuterostomia" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0040012", "meta" : { "definition" : { - "val" : "A pattern quality inhering in a bearer by virtue of the bearer's being placed alternately one above the other.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "A shape that is in the form of a plug, being tube-like and expanded on one end.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "plug like", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:24:41Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "alternate placement" + "lbl" : "plug shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000603", + "id" : "http://purl.obolibrary.org/obo/PATO_0000837", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete closure value" + "lbl" : "obsolete auditory threshold value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001933", + "id" : "http://purl.obolibrary.org/obo/pato#has_divisor_entity", "meta" : { - "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned on opposite sides on the same plane.", - "xrefs" : [ "ISBN:0881923214" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "opposite" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002404", - "meta" : { - "definition" : { - "val" : "inverse of upstream of", - "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - } ] - }, - "type" : "PROPERTY", - "lbl" : "causally downstream of" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002405", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000428" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - } ] - }, "type" : "PROPERTY", - "lbl" : "immediately causally downstream of" + "lbl" : "has_divisor_entity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000617", + "id" : "http://purl.obolibrary.org/obo/PATO_0040013", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "angled", + "val" : "dorsomedially directed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:27:57Z" } ] }, "type" : "CLASS", - "lbl" : "bent" + "lbl" : "dorsomedial orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001949", + "id" : "http://purl.obolibrary.org/obo/PATO_0000836", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly in a little point.", - "xrefs" : [ "ISBN:0881923214" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "pointleted" + "lbl" : "obsolete auditory ability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000616", + "id" : "http://purl.obolibrary.org/obo/PATO_0040010", "meta" : { "definition" : { - "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's lacking symmetry.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Mobility relative to a second entity.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "asymmetric", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "asymmetry", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "For example, distinct anteroposterior mobility of palatine relative to mesethmoid." + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:20:08Z" } ] }, "type" : "CLASS", - "lbl" : "asymmetrical" + "lbl" : "mobile relative to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001947", + "id" : "http://purl.obolibrary.org/obo/PATO_0000839", "meta" : { - "definition" : { - "val" : "A color pattern inhering in a bearer by virtue of bearer's being covered with reticulated lines of a different hue or degree of saturation.", - "xrefs" : [ "ISBN:0881923214" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "reticulated", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "net-like", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "netted" + "lbl" : "obsolete relative auditory ability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000619", + "id" : "http://purl.obolibrary.org/obo/PATO_0040011", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being overfilled.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "Immobility relative to a second entity.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000633" + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:21:07Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "For example: distinct anteroposterior immobility of palatine relative to mesethmoid." } ] }, "type" : "CLASS", - "lbl" : "crowded" + "lbl" : "immobile relative to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001948", + "id" : "http://purl.obolibrary.org/obo/PATO_0000838", "meta" : { - "definition" : { - "val" : "A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by two or more parallel channels.", - "xrefs" : [ "PATOC:JE" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "fluted", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "furrowed" + "lbl" : "obsolete absolute auditory ability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000618", + "id" : "http://purl.obolibrary.org/obo/PATO_0040016", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's having two sides; two-sided.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides.", + "xrefs" : [ "https://orcid.org/0000-0003-3162-7490", "https://www.merriam-webster.com/dictionary/pentagonal" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T18:39:48Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" } ] }, "type" : "CLASS", - "lbl" : "bilateral" + "lbl" : "pentagonal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001941", + "id" : "http://purl.obolibrary.org/obo/PATO_0040017", "meta" : { "definition" : { - "val" : "A color consisting of yellow and green hues.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal.", + "xrefs" : [ "https://www.cancer.gov/publications/dictionaries/cancer-terms/def/dysplasia" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "dysgenesis", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "http://orcid.org/0000-0001-5208-3432" + }, { + "pred" : "http://purl.org/dc/elements/1.1/date", + "val" : "2018-11-12T19:01:51Z" } ] }, "type" : "CLASS", - 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"val" : "A shape quality inhering in a bearer by virtue of the bearer's terminating gradually in a rounded end.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being transiently dispersed in a solid, liquid, or gas before settling due to gravity or centrifugal forces.", + "xrefs" : [ "ENVO:pb", "https://github.com/pato-ontology/pato/issues/91" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "blunt" + "lbl" : "quality of a suspension" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000622", + "id" : "http://purl.obolibrary.org/obo/PATO_0015012", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being upright in position or posture.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of roughly equal proportions of positively and negatively charged particles, having neither a defined volume nor defined shape, having internal magnetic fields, and being electrically conductive.", + "xrefs" : [ "https://github.com/pato-ontology/pato/issues/88" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "upright", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "erect" + "lbl" : "quality of a plasma" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001951", + "id" : "http://purl.obolibrary.org/obo/PATO_0015013", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being in opposition round a common axis.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "The degree to which the bearer is exposed to visible light.", + "xrefs" : [ "https://github.com/pato-ontology/pato/issues/89" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "whorled" + "lbl" : "degree of illumination" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000621", + "id" : "http://purl.obolibrary.org/obo/PATO_0015010", "meta" : { + "definition" : { + "val" : "An increase in humidity.", + "xrefs" : [ "https://github.com/pato-ontology/pato/issues/90" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "humid", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000628" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015011" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "increased humidity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001956", + "id" : "http://purl.obolibrary.org/obo/PATO_0015011", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits size variation or change.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An decrease in humidity.", + "xrefs" : [ "https://github.com/pato-ontology/pato/issues/90" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015010" } ] }, "type" : "CLASS", - "lbl" : "variability of size" + "lbl" : "decreased humidity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000624", + "id" : "http://purl.obolibrary.org/obo/PATO_0015016", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's becoming joined together with an additional entity.", - "xrefs" : [ "PATOC:nw" ] + "val" : "Having a shape or form that resembles a step of a stairway (e.g., a ledge or offset margin).", + "xrefs" : [ "http://www.thefreedictionary.com/stepped", "https://github.com/pato-ontology/pato/issues/82" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "introduced into", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "inserted", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "inserted into" + "lbl" : "stepped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000623", + "id" : "http://purl.obolibrary.org/obo/PATO_0015017", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's protruding or projecting from the body.", - "xrefs" : [ "sdvc:sdvc" ] + "val" : "A physical quality inhering in an entity by virtue of a portion of the bearer's molecular or polymolecular constituents present in one phase being dispersed in a portion of the bearer's constituents present in another phase.", + "xrefs" : [ "ENVO:pb", "https://github.com/pato-ontology/pato/issues/91", "https://goldbook.iupac.org/html/C/C01172.html" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "prolapsed", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "prolapse", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "exserted" + "lbl" : "quality of a colloid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001957", + "id" : "http://purl.obolibrary.org/obo/PATO_0015014", "meta" : { "definition" : { - "val" : "A variability of size which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An increase in illumination.", + "xrefs" : [ "https://github.com/pato-ontology/pato/issues/89" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low variability of size", + "pred" : "hasRelatedSynonym", + "val" : "illuminated", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001958" + "val" : "http://purl.obolibrary.org/obo/PATO_0015015" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased variability of size" + "lbl" : "increased degree of illumination" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000626", + "id" : "http://purl.obolibrary.org/obo/PATO_0015015", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being moved or displaced to one side so as to make lateral.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "An decrease in illumination.", + "xrefs" : [ "https://github.com/pato-ontology/pato/issues/89" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0015014" } ] }, "type" : "CLASS", - "lbl" : "lateralized" + "lbl" : "decreased degree of illumination" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001954", + "id" : "http://purl.obolibrary.org/obo/PATO_0015018", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being linear, very narrow, tapering to a very fine point from a narrow base.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "A physical quality inhering in an entity by virtue of the bearer's solid or liquid constituents being suspended in a gas.", + "xrefs" : [ "ENVO:pb", "https://github.com/pato-ontology/pato/issues/91" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "needle-like", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "awl-shaped", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "subulate" + "lbl" : "quality of an aerosol" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001955", + "id" : "http://purl.obolibrary.org/obo/PATO_0015019", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being narrowly triangular, wider at the apex and tapering toward the base.", - "xrefs" : [ "wordreference:wordreference" ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter C.", + "xrefs" : [ "github:mah11", "https://github.com/pato-ontology/pato/issues/96" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "wedge-shaped", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cuneate" + "lbl" : "C-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000625", + "id" : "http://purl.obolibrary.org/obo/PATO_0015030", "meta" : { "definition" : { - "val" : "An oriented quality inhering in a bearer by virtue of the bearer's being reversed in position, order, or condition.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape that ineres in a bearer by virtue of the bearer's mass being distributed in a feather-like fashion.", + "xrefs" : [ "https://github.com/pato-ontology/pato/issues/122" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "reversed", + "pred" : "hasExactSynonym", + "val" : "feather-shaped", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "backward", + "pred" : "hasExactSynonym", + "val" : "plumed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -34339,220 +35039,215 @@ } ] }, "type" : "CLASS", - "lbl" : "inverted" + "lbl" : "plume-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0030004", + "id" : "http://purl.obolibrary.org/obo/pato#has_dividend_entity", "meta" : { - "definition" : { - "val" : "An anterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some but not all of what are normally posterior structures.", - "xrefs" : [ "PATOC:EJS" ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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"val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "partially dorsalized" + "lbl" : "negative regulation of binding" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0030006", + "id" : "http://purl.obolibrary.org/obo/pato#inversely_associated_with", "meta" : { "definition" : { - "val" : "A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally posterior structures and missing some but not all of what are normally anterior structures.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear.", + "xrefs" : [ "PATOC:cjm", "Wikipedia:Association_(statistics)" ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-08-26T02:50:24Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" + "val" : "cjm" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Association is weaker than correlation or proportionality. These relations may be later added to PATO." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "partially posterioralized" + "type" : "PROPERTY", + "lbl" : "inversely_associated_with" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0030007", + "id" : "http://purl.obolibrary.org/obo/PATO_0001295", "meta" : { "definition" : { - "val" : "A ventralized quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally ventral structures and missing some but not all of what are normally dorsal structures.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "A reflective quality restricted to a particular wavelength.", + "xrefs" : [ "PATOC:cjm" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Typically used for light, but also applied to full EM spectrum." } ] }, "type" : "CLASS", - "lbl" : "partially ventralized" + "lbl" : "albedo" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0030000", + "id" : "http://purl.obolibrary.org/obo/PATO_0001296", "meta" : { "definition" : { - "val" : "A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally anterior structures and missing some or all of what are normally posterior structures.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "A scalar optical quality which obtains by the magnitude of the light emitted by the bearer.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" } ] }, "type" : "CLASS", - "lbl" : "anterioralized" + "lbl" : "luminous flux" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0030001", + "id" : "http://purl.obolibrary.org/obo/PATO_0001293", "meta" : { "definition" : { - "val" : "A malformed quality inhering in a bearer by virtue of the bearer's gross morphology containing what are normally dorsal structures and missing some or all of what are normally ventral structures.", - "xrefs" : [ "PATOC:EJS" ] + "val" : "A scalar EM radiation quality which obtains by the capacity of the bearer to retain radiation.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "segerdel" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dorsalized" + "lbl" : "absorption quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0030002", + "id" : "http://purl.obolibrary.org/obo/PATO_0001294", "meta" : { "definition" : { - 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"val" : "A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled backwards spirally on each side.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "A fluorescence quality inhering in a bearer by virtue of emitting light during exposure to radiation from an external source.", + "xrefs" : [ "web:www.thefreedictionary.com/" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -34561,624 +35256,502 @@ } ] }, "type" : "CLASS", - "lbl" : "revolute" + "lbl" : "fluorescent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000630", + "id" : "http://purl.obolibrary.org/obo/PATO_0015001", "meta" : { "definition" : { - "val" : "A posterioralized quality inhering in a bearer by virtue of the bearer's gross morphology containing only what are normally posterior structures.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Absence due to a degenerative process.", + "xrefs" : [ "PATOC:PortlandMeetingFeb2015" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - 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"val" : "A positional quality inhering in a bearer by virtue of the bearer possessing an uninterrupted or unbroken connection or spatial distribution relative to the position of another entity.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A color consisting of green hue and high brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-09-25T15:07:34Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "continuous with" + "lbl" : "light green" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005012", + "id" : "http://purl.obolibrary.org/obo/PATO_0001255", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A color consisting of orange hue and high brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-09-25T15:11:47Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0005013" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "complete structure" + "lbl" : "light orange" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005013", + "id" : "http://purl.obolibrary.org/obo/PATO_0001256", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A color consisting of orange color and low brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-09-25T15:12:35Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0005012" } ] }, "type" : "CLASS", - "lbl" : "incomplete structure" + "lbl" : "dark orange" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005014", + "id" : "http://purl.obolibrary.org/obo/PATO_0001253", "meta" : { "definition" : { - "val" : "A spheroid shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, spherical.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A color consisting of magenta color and high brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-09-25T15:16:25Z" } ] }, "type" : "CLASS", - "lbl" : "subspherical" + "lbl" : "light magenta" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005010", + "id" : "http://purl.obolibrary.org/obo/PATO_0001254", "meta" : { "definition" : { - "val" : "A branched quality inhering in a bearer by virtue of the bearer's having many fine filaments or branches that give a feathery appearance: for example, resembling a feather.", - "xrefs" : [ "www.oxforddictionaries.com:http://www.oxforddictionaries.com/us/definition/american_english/plumose" ] + "val" : "A color consisting of magenta with low brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-09-25T15:03:17Z" } ] }, "type" : "CLASS", - "lbl" : "plumose" + "lbl" : "dark magenta" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001905", + "id" : "http://purl.obolibrary.org/obo/PATO_0001268", "meta" : { "definition" : { - "val" : "The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A color consisting of brown hue and low saturation.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "having physical part", + "val" : "pale brown", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -35187,67 +35760,63 @@ } ] }, "type" : "CLASS", - "lbl" : "has normal numbers of parts of type" + "lbl" : "desaturated brown" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001906", + "id" : "http://purl.obolibrary.org/obo/PATO_0001269", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's participation in movement.", + "val" : "A color consisting of cyan colour and high saturation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright cyan", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "movement quality" + "lbl" : "saturated cyan" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001903", + "id" : "http://purl.obolibrary.org/obo/PATO_0001262", "meta" : { "definition" : { - "val" : "A directional quality inhering in a bearer by virtue of the bearer's having two directions.", + "val" : "A color consisting of red hue and high brightness.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "bi-directional" + "lbl" : "light red" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001904", + "id" : "http://purl.obolibrary.org/obo/PATO_0001263", "meta" : { "definition" : { - "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction approximating the shape of a circle.", + "val" : "A color consisting of yellow hue and low brightness.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "circling direction" - }, { - "id" : "http://purl.obolibrary.org/obo/pato#cell_quality", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "cell_quality" - } ] - }, - "type" : "PROPERTY" + "lbl" : "dark yellow" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001909", + "id" : "http://purl.obolibrary.org/obo/PATO_0001260", "meta" : { "definition" : { - "val" : "A nucleate quality inhering in a bearer by virtue of the bearer's having three nuclei.", - "xrefs" : [ "thefreedictionary:thefreedictionary" ] + "val" : "A color consisting of purple color and high brightness.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -35256,378 +35825,457 @@ } ] }, "type" : "CLASS", - "lbl" : "trinucleate" + "lbl" : "light purple" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001907", + "id" : "http://purl.obolibrary.org/obo/PATO_0001261", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's being like the surface of a compact mass of grapes.", - "xrefs" : [ "PATOC:cvs" ] + "val" : "A color consisting of red hue and low brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "botryoidal" + "lbl" : "dark red" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001908", + "id" : "http://purl.obolibrary.org/obo/PATO_0001266", "meta" : { "definition" : { - "val" : "A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus.", + "val" : "A color consisting of blue hue and low saturation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pale blue", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "multinucleate" + "lbl" : "desaturated blue" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001901", + "id" : "http://purl.obolibrary.org/obo/PATO_0001267", "meta" : { "definition" : { - "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces south.", + "val" : "A color consisting of brown hue and high saturation.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright brown", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001900" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "back" - }, { - "id" : "http://www.geneontology.org/formats/oboInOwl#consider", - "type" : "PROPERTY", - "lbl" : "consider" + "lbl" : "saturated brown" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001902", + "id" : "http://purl.obolibrary.org/obo/PATO_0001264", "meta" : { "definition" : { - "val" : "A directional quality inhering in a bearer by virtue of the bearer's having one direction only.", + "val" : "A color consisting of yellow hue and high brightness.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "blond", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "unidirectional" + "lbl" : "light yellow" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001900", + "id" : "http://purl.obolibrary.org/obo/PATO_0001265", "meta" : { "definition" : { - "val" : "A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the south when it faces north.", + "val" : "A color consisting of blue hue and high saturation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright blue", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001901" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "front" + "lbl" : "saturated blue" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005022", + "id" : "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", + "type" : "PROPERTY", + "lbl" : "eco subset" + }, { + "id" : "http://purl.obolibrary.org/obo/pato#realized_by", "meta" : { - "definition" : { - "val" : "A diameter that remains constant throughout the extent of an entity.", - "xrefs" : [ "PATOC:WD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-10-17T14:15:59Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "uniform diameter" + "type" : "PROPERTY", + "lbl" : "realized_by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005023", + "id" : "http://purl.obolibrary.org/obo/PATO_0001279", "meta" : { - "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is in the parasagittal plane.", - "xrefs" : [ "PATOC:WD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-10-17T14:21:30Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001280" } ] }, - "type" : "CLASS", - "lbl" : "parasagittal orientation" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005024", + "id" : "http://purl.obolibrary.org/obo/PATO_0001273", "meta" : { "definition" : { - "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed along the longitudinal or anterior-posterior axis.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A color consisting of grey color and high saturation.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-10-17T14:24:19Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "longitudinal orientation" + "lbl" : "obsolete bright grey" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005020", + "id" : "http://purl.obolibrary.org/obo/PATO_0001274", "meta" : { "definition" : { - "val" : "A shape quality inhering on a bearer by virtue of a bearer's shape lacking in pattern or uniformity; for example, it may have sides of different lengths, different curvatures, or unequal angles.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A color consisting of grey color and low saturation.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-10-03T10:23:17Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "irregularly shaped" + "lbl" : "obsolete pale grey" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0005021", + "id" : "http://purl.obolibrary.org/obo/PATO_0001271", "meta" : { "definition" : { - "val" : "Cuspidate quality inhering in a bearer by virtue of the bearer's possessing a single cusp.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A color consisting of green hue and high saturation.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright green", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "wasila.dahdul" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2014-10-17T14:14:04Z" } ] }, "type" : "CLASS", - "lbl" : "unicuspidate" + "lbl" : "saturated green" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001916", + "id" : "http://purl.obolibrary.org/obo/PATO_0001272", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and upper surface of an organism relative to another entity.", - "xrefs" : [ "PATOC:wd" ] + "val" : "A color consisting of green hue and low saturation.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pale green", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "posterodorsal to" + "lbl" : "desaturated green" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001917", + "id" : "http://purl.obolibrary.org/obo/PATO_0001277", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and abdomen of an organism relative to another entity.", - "xrefs" : [ "PATOC:wd" ] + "val" : "A color consisting of orange hue and high saturation.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright orange", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "anteroventral to" + "lbl" : "saturated orange" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001914", + "id" : "http://purl.obolibrary.org/obo/PATO_0001278", "meta" : { "definition" : { - "val" : "A physiological state which is characterized by normal electrical activity in neuronal tissue.", - "xrefs" : [ "PATOC:mb" ] + "val" : "A color consisting of orange hue and low saturation.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pale orange", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "non-ictal" + "lbl" : "desaturated orange" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001915", + "id" : "http://purl.obolibrary.org/obo/pato#has_divisor_quality", "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the front and upper surface of an organism relative to another entity.", - "xrefs" : [ "PATOC:wd" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "anterodorsal to" + "type" : "PROPERTY", + "lbl" : "has_divisor_quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001918", + "id" : "http://purl.obolibrary.org/obo/PATO_0001275", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and abdomen of an organism relative to another entity.", - "xrefs" : [ "PATOC:wd" ] + "val" : "A color consisting of magenta color and high saturation.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright magenta", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "posteroventral to" + "lbl" : "saturated magenta" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001919", + "id" : "http://purl.obolibrary.org/obo/PATO_0001276", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the back or upper surface of an organism.", - "xrefs" : [ "PATOC:mb" ] + "val" : "A color consisting of magenta color and low saturation.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pale magenta", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "mislocalised dorsally" + "lbl" : "desaturated magenta" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001912", + "id" : "http://purl.obolibrary.org/obo/PATO_0001270", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the state of bearer's mechanical, physical, and biochemical processes.", - "xrefs" : [ "PATOC:mb" ] + "val" : "A color consisting of cyan colour and low saturation.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pale cyan", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "physiological state" + "lbl" : "desaturated cyan" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001913", + "id" : "http://purl.obolibrary.org/obo/GO_0023056", "meta" : { "definition" : { - "val" : "A physiological state which is characterized by periods of high-frequency high amplitude electrical activity in neuronal tissue.", - "xrefs" : [ "PATOC:mb" ] + "val" : "Any process that activates, maintains or increases the frequency, rate or extent of a signaling process.", + "xrefs" : [ "GOC:mtg_signal" ] }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "positive regulation of signalling process", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "positive regulation of signaling process", + "xrefs" : [ "GOC:bf" ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-02-16T09:30:50Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "ictal" + "lbl" : "positive regulation of signaling" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001910", + "id" : "http://purl.obolibrary.org/obo/GO_0023057", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's one part being layered over another connected part.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of a signaling process.", + "xrefs" : [ "GOC:mtg_signal" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "negative regulation of signaling process", + "xrefs" : [ "GOC:bf" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "negative regulation of signalling process", + "xrefs" : [ "GOC:mah" ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-02-16T09:30:50Z" } ] }, "type" : "CLASS", - "lbl" : "folded" + "lbl" : "negative regulation of signaling" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001911", + "id" : "http://purl.obolibrary.org/obo/GO_0023052", "meta" : { "definition" : { - "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's exhibiting movement in a circular course.", - "xrefs" : [ "PATOC:mb" ] + "val" : "The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered.", + "xrefs" : [ "GOC:mtg_signal", "GOC:mtg_signaling_feb11", "GOC:signaling" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_pombe", "http://purl.obolibrary.org/obo/go#goslim_mouse" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "single organism signaling", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "signalling process", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasExactSynonym", + "val" : "signaling process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "signalling", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "biological signaling", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0023046" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "janelomax" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044700" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-02-16T09:30:50Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that a signal is any variable property or parameter that serves to convey information, and may be a physical entity such as a gene product or small molecule, a photon, or a change in state such as movement or voltage change." } ] }, "type" : "CLASS", - "lbl" : "circling" + "lbl" : "signaling" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001927", + "id" : "http://purl.obolibrary.org/obo/GO_0023051", "meta" : { "definition" : { - "val" : "A fluorescence which is lower than normal.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Any process that modulates the frequency, rate or extent of a signaling process.", + "xrefs" : [ "GOC:mtg_signal" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low fluorescence", - "xrefs" : [ ] + "pred" : "hasRelatedSynonym", + "val" : "regulation of signalling process", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "regulation of signaling process", + "xrefs" : [ "GOC:bf" ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001926" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-02-16T09:30:50Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "decreased fluorescence" + "lbl" : "regulation of signaling" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001928", + "id" : "http://purl.obolibrary.org/obo/PATO_0001284", "meta" : { "definition" : { - "val" : "A texture quality inhering in a bearer by virtue of a local accumulation of fluid underneath the surface of the bearer.", + "val" : "A color consisting of red hue and low saturation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "blistering", + "pred" : "hasExactSynonym", + "val" : "pale red", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -35636,192 +36284,238 @@ } ] }, "type" : "CLASS", - "lbl" : "blistered" + "lbl" : "desaturated red" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001925", + "id" : "http://purl.obolibrary.org/obo/PATO_0001285", "meta" : { "definition" : { - "val" : "A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A color consisting of yellow hue and high saturation.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright yellow", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This quality either inheres directly in the surface, or in the entity that has the surface. For example, to say that a particular fly wing is curved is shorthand for saying the wing has a surface which is curved." } ] }, "type" : "CLASS", - "lbl" : "surface feature shape" + "lbl" : "saturated yellow" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001926", + "id" : "http://purl.obolibrary.org/obo/PATO_0001282", "meta" : { "definition" : { - "val" : "A fluorescence which is higher than normal.", + "val" : "A color consisting of purple color and low saturation.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high fluorescence", + "val" : "pale purple", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001927" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased fluorescence" + "lbl" : "desaturated purple" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001929", + "id" : "http://purl.obolibrary.org/obo/PATO_0001283", "meta" : { "definition" : { - "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits shape variation or change.", + "val" : "A color consisting of red hue and high saturation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright red", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "variability of shape" + "lbl" : "saturated red" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001920", + "id" : "http://purl.obolibrary.org/obo/PATO_0001288", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the abdomen of an organism.", - "xrefs" : [ "PATOC:mb" ] + "val" : "A color consisting of red and brown hue and low brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "mislocalised ventrally" + "lbl" : "dark red brown" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001923", + "id" : "http://purl.obolibrary.org/obo/PATO_0001289", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the side of an organism.", - "xrefs" : [ "PATOC:mb" ] + "val" : "A color consisting of red and brown hue and high brightness.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "mislocalised laterally" + "lbl" : "light red brown" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001924", + "id" : "http://purl.obolibrary.org/obo/PATO_0001286", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the middle of an organism.", - "xrefs" : [ "PATOC:mb" ] + "val" : "A color consisting of yellow hue and low saturation.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "pale yellow", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "mislocalised medially" + "lbl" : "desaturated yellow" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001921", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_9347", "meta" : { - "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the front of an organism.", - "xrefs" : [ "PATOC:mb" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "Placentalia", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "placentals", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "placentals", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "placental mammals", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "eutherian mammals", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "mislocalised anteriorly" + "lbl" : "Eutheria" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001922", + "id" : "http://purl.obolibrary.org/obo/PATO_0001287", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the rear of an organism.", - "xrefs" : [ "PATOC:mb" ] + "val" : "A color consisting of red and brown hue.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "mislocalised posteriorly" + "lbl" : "red brown" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001097", + "id" : "http://purl.obolibrary.org/obo/GO_0016772", "meta" : { + "definition" : { + "val" : "Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).", + "xrefs" : [ "GOC:jl", "ISBN:0198506732" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl" ], + "xrefs" : [ { + "val" : "EC:2.7" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term encompasses all kinase activities, as well as activities that transfer other phosphorus-containing groups such as diphosphate or nucleotides." }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "molecular_function" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative force value" + "lbl" : "transferase activity, transferring phosphorus-containing groups" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001098", + "id" : "http://purl.obolibrary.org/obo/PATO_0001280", "meta" : { + "definition" : { + "val" : "Pink color having medium brightness and low saturation.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright pink", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001279" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute force" + "lbl" : "dark pale pink" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001095", + "id" : "http://purl.obolibrary.org/obo/PATO_0001281", "meta" : { + "definition" : { + "val" : "A color consisting of purple color and high saturation.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "bright purple", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete force value" + "lbl" : "saturated purple" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001096", + "id" : "http://purl.obolibrary.org/obo/PATO_0001215", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute force value" + "lbl" : "obsolete time_unit" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001099", + "id" : "http://purl.obolibrary.org/obo/PATO_0001216", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -35832,9 +36526,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative force" + "lbl" : "obsolete volume_unit" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001090", + "id" : "http://purl.obolibrary.org/obo/PATO_0001213", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -35845,31 +36539,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute elasticity value" + "lbl" : "obsolete mass_unit" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001093", + "id" : "http://purl.obolibrary.org/obo/PATO_0001214", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative flux value" - }, { - "id" : "http://purl.obolibrary.org/obo/pato#value_slim", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Value slim" - } ] - }, - "type" : "PROPERTY" + "lbl" : "obsolete temparature_unit" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001094", + "id" : "http://purl.obolibrary.org/obo/PATO_0001219", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -35880,577 +36565,501 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute flux value" + "lbl" : "obsolete area_unit" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001091", + "id" : "http://purl.obolibrary.org/obo/PATO_0001217", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative elasticity value" + "lbl" : "obsolete energy_unit" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001092", + "id" : "http://purl.obolibrary.org/obo/PATO_0001218", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete flux value" + "lbl" : "obsolete substance_unit" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0051338", + "id" : "http://purl.obolibrary.org/obo/GO_0065009", "meta" : { "definition" : { - 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"val" : "Growing horizontal to the ground without setting roots.", - "xrefs" : [ "PATO:PG" ] + "val" : "Add as annotation triples in the granting ontology", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-10-12T01:33:50Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Person:Alan Ruttenberg" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Person:Alan Ruttenberg" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "term replaced by" } ] }, - "type" : "CLASS", - "lbl" : "procumbent" + "type" : "PROPERTY", + "lbl" : "term replaced by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001058", + "id" : "http://purl.obolibrary.org/obo/RO_0002385", "meta" : { + "definition" : { + "val" : "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002385" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_potential_to_developmentally_contribute_to" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute acceleration" + "type" : "PROPERTY", + "lbl" : "has potential to developmentally contribute to" }, { - 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"val" : "Extremely acute and aggressive onset of a pathological process.", - "xrefs" : [ "PATOC:PNS" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "per-acute", + "val" : "x has the potential to develop into y iff x develops into y or if x is capable of developing into y", "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002387" } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_potential_to_develop_into" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-09-15T02:57:46Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - 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"pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative strain" + "lbl" : "posterolateral orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002399", + "id" : "http://purl.obolibrary.org/obo/PATO_0002500", "meta" : { "definition" : { - "val" : "A rotation quality inhering in a bearer by virtue of being rotated towards the front and the middle of an organism.", - "xrefs" : [ "PATOC:JI" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed ventrolaterally.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "ventrolaterally directed", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - 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"lbl" : "obsolete absolute energy" + "lbl" : "obsolete profound intensity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001070", + "id" : "http://purl.obolibrary.org/obo/RO_0002350", "meta" : { + "definition" : { + "val" : "is member of is a mereological relation between a item and a collection.", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002350" + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is member of" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "member_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "An organism that is a member of a population of organisms" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "SIO" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "member part of" } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute density" + "type" : "PROPERTY", + "lbl" : "member of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001086", + "id" : "http://purl.obolibrary.org/obo/PATO_0002526", "meta" : { + "definition" : { + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally.", + "xrefs" : [ "PATOC:EJS" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "antero-distal orientation", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-03-11T11:28:39Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002491" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "segerdel" } ] }, "type" : "CLASS", - "lbl" : "obsolete efficiency value" + "lbl" : "anterodistal orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001087", + "id" : "http://purl.obolibrary.org/obo/RO_0002351", "meta" : { + "definition" : { + "val" : "has member is a mereological relation between a collection and an item.", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0002351" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "SIO" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_member" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative efficiency value" + "type" : "PROPERTY", + "lbl" : "has member" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001084", + "id" : "http://purl.obolibrary.org/obo/PATO_0002527", "meta" : { + "definition" : { + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posterodistally.", + "xrefs" : [ "PATOC:EJS" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "postero-distal orientation", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002504" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "segerdel" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-03-11T11:29:22Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative acceleration value" + "lbl" : "posterodistal orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001085", + "id" : "http://purl.obolibrary.org/obo/RO_0001018", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "contained in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Containment is location not involving parthood, and arises only where some immaterial continuant is involved." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "contained_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Intended meaning:\ndomain: material entity\nrange: spatial region or site (immaterial continuant)\n " } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute acceleration value" + "type" : "PROPERTY", + "lbl" : "contained in" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001088", + "id" : "http://purl.obolibrary.org/obo/RO_0001019", "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "xrefs" : [ { + "val" : "RO:0001019" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "contains" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "contains" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute efficiency value" + "type" : "PROPERTY", + "lbl" : "contains" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001089", + "id" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "type" : "PROPERTY", + "lbl" : "shorthand" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002520", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer being shaped like a scute or an osteoderm.", + "xrefs" : [ "PATOC:EJS" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "segerdel" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-02-10T01:37:47Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete elasticity value" + "lbl" : "scute-like" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001082", + "id" : "http://purl.obolibrary.org/obo/PATO_0002521", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a funnel.", + "xrefs" : [ "PATOC:EJS" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "segerdel" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-02-10T01:40:05Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete damage value" + "lbl" : "funnel-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001083", + "id" : "http://purl.obolibrary.org/obo/RO_0001015", "meta" : { + "definition" : { + "val" : "a relation between two independent continuants, the location and the target, in which the target is entirely within the location", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "RO:0001015" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this cage is the location of this rat" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "location_of" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "location_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "is location of" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my head is the location of my brain" } ] }, - "type" : "CLASS", - "lbl" : "obsolete acceleration value" + "type" : "PROPERTY", + "lbl" : "location_of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001080", + "id" : "http://purl.obolibrary.org/obo/pato#hpo_slim", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Human phenotype slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001204", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative work" + "lbl" : "obsolete not enlarged" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001081", + "id" : "http://purl.obolibrary.org/obo/PATO_0002535", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a short and stout cylindrical shape.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-08-12T11:30:08Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete physical measure value" + "lbl" : "peg-like" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002090", + "id" : "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002575", - "val" : "http://purl.obolibrary.org/obo/BFO_0000063" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "ends_at_start_of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "meets" - }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)" + "val" : "Term not to be used for direct annotation" } ] }, - "type" : "PROPERTY", - "lbl" : "immediately precedes" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001017", + "id" : "http://purl.obolibrary.org/obo/PATO_0001205", "meta" : { + "definition" : { + "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having toothlike projections in the margin.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "toothed", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "dentate", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative occurence value" + "lbl" : "dentated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000169", + "id" : "http://purl.obolibrary.org/obo/PATO_0002536", "meta" : { "definition" : { - "val" : "An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a boomerang, with two arms connected at an angle.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-08-12T11:32:16Z" } ] }, "type" : "CLASS", - "lbl" : "viability" + "lbl" : "boomerang shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002348", + "id" : "http://purl.obolibrary.org/obo/PATO_0002533", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer resembling wood.", - "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/ligneous" ] + "val" : "A multipartite quality inhering in a bearer by virtue of the bearer being divided into two parts.", + "xrefs" : [ "PATOC:WD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T04:06:50Z" + "val" : "2014-08-12T11:12:13Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" } ] }, "type" : "CLASS", - "lbl" : "ligneous" + "lbl" : "bipartite" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000168", + "id" : "http://purl.obolibrary.org/obo/PATO_0001202", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000586" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative time" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001018", + "id" : "http://purl.obolibrary.org/obo/PATO_0002534", "meta" : { "definition" : { - "val" : "A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a plowshare.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "xrefs" : [ { - "val" : "Wikipedia:Physical_property" + "val" : "Image:http://2.bp.blogspot.com/_TbkIC-eqFNM/S66IJ3omNWI/AAAAAAAAFSk/pzThLJPvYZw/s1600/ard-detail.gif" } ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "relational physical quality", + "val" : "plow-share shaped", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-08-12T11:23:12Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0002079" } ] }, "type" : "CLASS", - "lbl" : "physical quality" + "lbl" : "plowshare shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002349", + "id" : "http://purl.obolibrary.org/obo/PATO_0001203", "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the base of an organism relative to another entity.", - "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/basal" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T04:12:25Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001873" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "basal to" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001499", + "id" : "http://purl.obolibrary.org/obo/PATO_0001208", "meta" : { "definition" : { - "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter).", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "An odor quality inhering in a bearer by virtue of the bearer's lacking odour.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "globular", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "rotund", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000408" } ] }, "type" : "CLASS", - "lbl" : "spherical" + "lbl" : "odorless" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002346", + "id" : "http://purl.obolibrary.org/obo/PATO_0002539", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two connected parts, roughly spherical, of different sizes.", - "xrefs" : [ "PATOC:MH" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a ring (a circular shape enclosing a space).", + "xrefs" : [ "PATOC:WD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "wasila.dahdul" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T03:58:10Z" + "val" : "2014-08-12T12:01:56Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "snowman-shaped" + "lbl" : "ring shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001015", + "id" : "http://purl.obolibrary.org/obo/PATO_0001209", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -37764,490 +38676,397 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative occurence" + "lbl" : "obsolete absolute function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002347", + "id" : "http://purl.obolibrary.org/obo/PATO_0002537", "meta" : { "definition" : { - "val" : "A conical quality inhering in a bearer by virtue of the bearer's resembling a cone, with the pointed end attached to an organism.", - "xrefs" : [ "wiktionary:http://en.wiktionary.org/wiki/obconical" ] + "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a shape not quite ovoid. approximately ovoid.", + "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/subovoid" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T04:05:28Z" + "val" : "2014-08-12T11:51:38Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "wasila.dahdul" } ] }, "type" : "CLASS", - "lbl" : "obconical" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001016", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete absolute occurence value" - }, { - "id" : "http://purl.obolibrary.org/obo/GO_0051716", - "meta" : { - "definition" : { - "val" : "Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.", - "xrefs" : [ "GOC:bf", "GOC:jl" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" - } ] - }, - "type" : "CLASS", - "lbl" : "cellular response to stimulus" + "lbl" : "subovoid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001019", + "id" : "http://purl.obolibrary.org/obo/PATO_0001206", "meta" : { "definition" : { - "val" : "A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "density", + "pred" : "hasExactSynonym", + "val" : "serrate", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001975" } ] }, "type" : "CLASS", - "lbl" : "mass density" + "lbl" : "serrated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002340", + "id" : "http://purl.obolibrary.org/obo/PATO_0002538", "meta" : { "definition" : { - "val" : "A quality of being minutely hispid.", - "xrefs" : [ "PATOC:DD" ] + "val" : "A shape quality that obtains by virtue of the bearer being concave on one side and convex on the other.", + "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/concavo-convex" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "concavoconvex", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "wasila.dahdul" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T02:53:21Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "2014-08-12T11:56:13Z" } ] }, "type" : "CLASS", - "lbl" : "hispidulous" + "lbl" : "concavo-convex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001493", + "id" : "http://purl.obolibrary.org/obo/PATO_0001207", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001494" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "hypertrophic growth" + "lbl" : "obsolete absolute compatability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000161", + "id" : "http://purl.obolibrary.org/obo/RO_0002334", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.", - "xrefs" : [ "PATOC:melissa" ] + "val" : "inverse of regulates", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "regulated by (processual)" } ] }, - "type" : "CLASS", - "lbl" : "rate" + "type" : "PROPERTY", + "lbl" : "regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045070", + "id" : "http://purl.obolibrary.org/obo/PATO_0002531", "meta" : { - "definition" : { - "val" : "A tolerance to an external stimulus which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "PATO:0002631" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "obsoleted because the ID was accidentally reused" } ] }, "type" : "CLASS", - "lbl" : "normal tolerance to" + "lbl" : "obsolete refractory" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002341", + "id" : "http://purl.obolibrary.org/obo/PATO_0001200", "meta" : { "definition" : { - "val" : "A quality of being covered with short, dense, matted hairs.", - "xrefs" : [ "thefreedictionary:www.thefreedictionary.com" ] + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter T.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T02:55:56Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "tomentose" + "lbl" : "T-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000160", + "id" : "http://purl.obolibrary.org/obo/PATO_0001201", "meta" : { + "definition" : { + "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter Y.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative incidence" + "lbl" : "Y-shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001010", + "id" : "http://purl.obolibrary.org/obo/PATO_0002532", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "PATO:0002632" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "obsoleted because the ID was accidentally reused" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete relative intensity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001494", - "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001493" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "hypotrophic growth" + "lbl" : "obsolete secondary" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045071", + "id" : "http://purl.obolibrary.org/obo/RO_0002335", "meta" : { "definition" : { - "val" : "A tonicity which is relatively normal or average", + "val" : "inverse of negatively regulates", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "normal tonicity" + "type" : "PROPERTY", + "lbl" : "negatively regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001491", + "id" : "http://purl.obolibrary.org/obo/RO_0002336", "meta" : { "definition" : { - "val" : "A paedomorphic growth quality which is due to a reduced rate.", - "xrefs" : [ "PATOC:mh" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "neotenic growth", + "val" : "inverse of positively regulates", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "neotenous growth" + "type" : "PROPERTY", + "lbl" : "positively regulated by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000163", + "id" : "http://purl.obolibrary.org/obo/PATO_0002530", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "PATO:0002630" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "obsoleted because the ID was accidentally reused" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative rate" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000162", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete absolute rate" + "lbl" : "obsolete episodic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045072", + "id" : "http://purl.obolibrary.org/obo/ENVO_01000952", "meta" : { "definition" : { - "val" : "A turgor which is relatively normal or average", - "xrefs" : [ ] + "val" : "A process during which a natural environmental system is altered by human action.", + "xrefs" : [ "https://en.wikipedia.org/wiki/Anthropization" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "anthropization", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "normal turgor" + "lbl" : "anthropisation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001492", + "id" : "http://purl.obolibrary.org/obo/ENVO_01000951", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] + "definition" : { + "val" : "An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition.", + "xrefs" : [ "https://en.wikipedia.org/wiki/Anthropization", "https://en.wikipedia.org/wiki/Natural_environment" ] + } }, "type" : "CLASS", - "lbl" : "growth rate" + "lbl" : "natural environment" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001497", + "id" : "http://purl.obolibrary.org/obo/PATO_0000763", "meta" : { "definition" : { - "val" : "A reproductive quality inhering in the young of an animal by virtue of the bearer's disposition to survive and develop normally.", + "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's being affected by loss of the ability to move a body part.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "palsy", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "brood viability" + "lbl" : "paralysed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002344", + "id" : "http://purl.obolibrary.org/obo/PATO_0000762", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being characterized by fine, entangled hairs giving the appearance of cobweb.", - "xrefs" : [ "PATOC:DD" ] + "val" : "Diminished, damaged, or weakened.", + "xrefs" : [ "answers.com:answers.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", + "val" : "PATO:0001624" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T03:49:00Z" - } ] - }, - "type" : "CLASS", - "lbl" : "arachnose" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001013", - "meta" : { - "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute intensity value" + "lbl" : "obsolete impaired" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000165", + "id" : "http://purl.obolibrary.org/obo/RO_0002331", "meta" : { "definition" : { - "val" : "A quality in which events occur in sequence.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "c involved_in p if and only if c enables some process p', and p' is part of p", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "time" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001498", - "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001439" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "enables part of" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "actively involved in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://wiki.geneontology.org/index.php/Involved_in" } ] }, - "type" : "CLASS" + "type" : "PROPERTY", + "lbl" : "involved in" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001014", + "id" : "http://purl.obolibrary.org/obo/PATO_0000765", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute occurence" + "lbl" : "obsolete absolute consumption value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000164", + "id" : "http://purl.obolibrary.org/obo/PATO_0000764", "meta" : { + "definition" : { + "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's receiving or being subjected to an action without responding or initiating an action in return.", + "xrefs" : [ "www.answers.com:www.answers.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative temporal" + "lbl" : "passive" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002345", + "id" : "http://purl.obolibrary.org/obo/RO_0002333", "meta" : { "definition" : { - "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc", - "xrefs" : [ "PATOC:MH" ] + "val" : "inverse of enables", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T03:55:16Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "lemon-shaped" + "type" : "PROPERTY", + "lbl" : "enabled by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002342", + "id" : "http://purl.obolibrary.org/obo/PATO_0055001", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being a cupule, with a structure similar to a cup that also encloses the ovule in partiality.", - "xrefs" : [ "PATOC:DD" ] + "val" : "A spatial distribution of a process in which the process occupies a smaller length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type.", + "xrefs" : [ "orcid:0000-0003-4148-4606" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T02:59:07Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "val" : "midori" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2019-07-29T14:22:24Z" } ] }, "type" : "CLASS", - "lbl" : "cupulate" + "lbl" : "decreased spatial extent of a process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001495", + "id" : "http://purl.obolibrary.org/obo/PATO_0000767", "meta" : { "definition" : { - "val" : "A concave quality inhering in a bearer by virtue of the bearer's shape being a V-shaped cut.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A consumption which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high consumption", + "xrefs" : [ ] + }, { "pred" : "hasRelatedSynonym", - "val" : "indented", + "val" : "increased propensity to consume", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "notched" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001011", - "meta" : { - "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Use GO:0007631" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { @@ -38256,63 +39075,79 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute intensity" + "lbl" : "obsolete increased consumption" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000167", + "id" : "http://purl.obolibrary.org/obo/PATO_0055002", "meta" : { "definition" : { - "val" : "A limited, often assigned period of activity.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "A spatial distribution of a process in which the process occupies a greater length, area, or volume than the reference process. For example, heterochromatin may form over a shorter length of a chromosome in a mutant than in wild type.", + "xrefs" : [ "https://orcid.org/0000-0003-4148-4606" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2019-07-29T14:23:31Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "midori" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete bouts" + "lbl" : "increased spatial extent of a process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001012", + "id" : "http://purl.obolibrary.org/obo/PATO_0000766", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative intensity value" + "lbl" : "obsolete relative consumption value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002343", + "id" : "http://purl.obolibrary.org/obo/PATO_0000769", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's lying or growing on the ground but with erect or rising tips.", - "xrefs" : [ "thefreedictionary:www.thefreedictionary.com" ] + "val" : "A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T03:13:12Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000770" } ] }, "type" : "CLASS", - "lbl" : "decumbent" + "lbl" : "coordinated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000166", + "id" : "http://purl.obolibrary.org/obo/PATO_0000768", "meta" : { + "definition" : { + "val" : "A consumption which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low consumption", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "decreased propensity to consume", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Use GO:0007631" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { @@ -38321,236 +39156,247 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute time" + "lbl" : "obsolete decreased consumption" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001496", + "id" : "http://purl.obolibrary.org/obo/RO_0002327", "meta" : { - "definition" : { - "val" : "A reproductive quality inhering in the young of an animal by virtue of the bearer's being cared for at one time.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "brood quality" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045077", - "meta" : { - "definition" : { - "val" : "A variability of size which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is executing" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "is catalyzing" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "a particular instances of akt-2 enables some instance of protein kinase activity" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "catalyzes" } ] }, - "type" : "CLASS", - "lbl" : "normal variability of size" + "type" : "PROPERTY", + "lbl" : "enables" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045078", + "id" : "http://purl.obolibrary.org/obo/RO_0002328", "meta" : { "definition" : { - "val" : "A variability of temperature which is relatively normal or average", + "val" : "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "xrefs" : [ { + "val" : "RO:0002328" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This is a grouping relation that collects relations used for the purpose of connecting structure and function" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "functionally_related_to" } ] }, - "type" : "CLASS", - "lbl" : "normal variability of temperature" + "type" : "PROPERTY", + "lbl" : "functionally related to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045079", + "id" : "http://purl.obolibrary.org/obo/RO_0002329", "meta" : { "definition" : { - "val" : "A velocity which is relatively normal or average", + "val" : "this relation holds between c and p when c is part of some c', and c' is capable of p.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "xrefs" : [ { + "val" : "RO:0002329" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "part_of_structure_that_is_capable_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "false" } ] }, - "type" : "CLASS", - "lbl" : "normal velocity" + "type" : "PROPERTY", + "lbl" : "part of structure that is capable of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045073", + "id" : "http://purl.obolibrary.org/obo/RO_0002323", "meta" : { "definition" : { - "val" : "A quality of aprocess that has a value that is normal or average.", + "val" : "A mereological relationship or a topological relationship", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-21T14:11:01Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "normal process quality" + "type" : "PROPERTY", + "lbl" : "mereotopologically related to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045074", + "id" : "http://purl.obolibrary.org/obo/RO_0002324", "meta" : { "definition" : { - "val" : "A variability which is relatively normal or average", + "val" : "A relationship that holds between entities participating in some developmental process (GO:0032502)", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development" } ] }, - "type" : "CLASS", - "lbl" : "normal variability" + "type" : "PROPERTY", + "lbl" : "developmentally related to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001490", + "id" : "http://purl.obolibrary.org/obo/PATO_0000761", "meta" : { "definition" : { - "val" : "A growth quality of a process inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced or increased growth.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting reduced activity.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hypoactive", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000760" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "heterochronic growth" + "lbl" : "decreased behavioural activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045075", + "id" : "http://purl.obolibrary.org/obo/RO_0002326", "meta" : { - "definition" : { - "val" : "A variability which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We would like to say\n\nif and only if\n exists c', p'\n c part_of c' and c' capable_of p\n and\n c capable_of p' and p' part_of p\nthen\n c contributes_to p\n\nHowever, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. " + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to \"ribosome binding\". And all three are part_of an eIF2 complex" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity." } ] }, - "type" : "CLASS", - "lbl" : "normal variability of color" + "type" : "PROPERTY", + "lbl" : "contributes to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045076", + "id" : "http://purl.obolibrary.org/obo/PATO_0000760", "meta" : { "definition" : { - "val" : "A variability of rate which is relatively normal or average", - "xrefs" : [ ] + "val" : "A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "hyperactive", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000761" } ] }, "type" : "CLASS", - "lbl" : "normal variability of rate" + "lbl" : "increased behavioural activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001028", + "id" : "http://purl.obolibrary.org/obo/PATO_0000774", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the rate of change of the bearer's velocity in either speed or direction.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Acceleration" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "acceleration" + "lbl" : "obsolete bizarre gate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002359", + "id" : "http://purl.obolibrary.org/obo/PATO_0000773", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's width being notably higher than its length.", + "val" : "A discrimination quality in a bearer by virtue of the bearer's liking a perceived stimulus.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-03-13T06:04:00Z" } ] }, "type" : "CLASS", - "lbl" : "broad" + "lbl" : "preference" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001029", + "id" : "http://purl.obolibrary.org/obo/PATO_0000776", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of ratio of the bearer's output to the bearer's input.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "efficiency" + "lbl" : "obsolete memory value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000179", + "id" : "http://purl.obolibrary.org/obo/PATO_0000775", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -38561,76 +39407,35 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete body position" + "lbl" : "obsolete learning value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002357", + "id" : "http://purl.obolibrary.org/obo/PATO_0000778", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a strait side and an arched side giving the bearer the form of the letter D.", - "xrefs" : [ "PATOC:AE" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-02-21T11:46:51Z" - } ] - }, - "type" : "CLASS", - "lbl" : "D-shaped" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001026", - "meta" : { - "definition" : { - "val" : "A physical quality which is equal to the energy transferred by a force to a moving object.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Work" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "W", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "work" + "lbl" : "obsolete short term memory value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002358", + "id" : "http://purl.obolibrary.org/obo/PATO_0000777", "meta" : { - "definition" : { - "val" : "An elongated raised margin or border.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "ridge-like", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-02-21T12:27:39Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "ridged" + "lbl" : "obsolete long term memory value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001027", + "id" : "http://purl.obolibrary.org/obo/PATO_0000779", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -38641,96 +39446,87 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete physical quantity" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002086", - "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)" - } ] - }, - "type" : "PROPERTY", - "lbl" : "ends after" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002087", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "David Osumi-Sutherland" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "starts_at_end_of" - } ] - }, - "type" : "PROPERTY", - "lbl" : "immediately preceded by" + "lbl" : "obsolete absolute locomotor activity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002351", + "id" : "http://purl.obolibrary.org/obo/PATO_0000770", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer resembling or containing flesh.", - "xrefs" : [ "wiktionary:http://en.wiktionary.org/wiki/fleshy" ] + "val" : "A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T04:15:30Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000769" } ] }, "type" : "CLASS", - "lbl" : "fleshy" + "lbl" : "uncoordinated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001020", + "id" : "http://purl.obolibrary.org/obo/PATO_0000772", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of whether the bearer has been harmed or injured or spoiled.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A preference quality in a bearer by virtue of the bearer's having no preference to a perceived stimulus.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "damage" + "lbl" : "indifference" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045080", + "id" : "http://purl.obolibrary.org/obo/RO_0002314", "meta" : { "definition" : { - "val" : "A virulence which is relatively normal or average", + "val" : "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/20064205" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + } ] + }, + "type" : "PROPERTY", + "lbl" : "inheres in part of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000771", + "meta" : { + "definition" : { + "val" : "A preference quality in a bearer by virtue of the bearer's disliking a perceived stimulus.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal virulence" + "lbl" : "aversion" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000172", + "id" : "http://purl.obolibrary.org/obo/IAO_0000002", + "type" : "INDIVIDUAL", + "lbl" : "example to be eventually removed" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000785", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -38741,66 +39537,48 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative yield" + "lbl" : "obsolete muscle function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002352", + "id" : "http://purl.obolibrary.org/obo/PATO_0000784", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's upper parts die back to the rootstock at the end of the growing season.", - "xrefs" : [ "PATOC:PG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T04:29:36Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "herbaceous" + "lbl" : "obsolete excretory function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045081", + "id" : "http://purl.obolibrary.org/obo/PATO_0000787", "meta" : { - "definition" : { - "val" : "A viscosity which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal viscosity" + "lbl" : "obsolete neurobehavioral function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001021", + "id" : "http://purl.obolibrary.org/obo/PATO_0000786", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's capacity to do work.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Energy" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "energy" + "lbl" : "obsolete neural function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000171", + "id" : "http://purl.obolibrary.org/obo/PATO_0000789", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -38811,9 +39589,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute yield" + "lbl" : "obsolete respiratory function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000174", + "id" : "http://purl.obolibrary.org/obo/PATO_0000788", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -38824,207 +39602,180 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete autonomic function" + "lbl" : "obsolete reproductive function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045082", + "id" : "http://purl.obolibrary.org/obo/RO_0002305", "meta" : { - "definition" : { - "val" : "A waxiness which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.org/dc/terms/creator", + "val" : "cjm" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "cjm" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y" } ] }, - "type" : "CLASS", - "lbl" : "normal waxiness" + "type" : "PROPERTY", + "lbl" : "causally upstream of, negative effect" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045083", + "id" : "http://purl.obolibrary.org/obo/PATO_0000781", "meta" : { - "definition" : { - "val" : "A wetness which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal wetness" + "lbl" : "obsolete circulatory function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000173", + "id" : "http://purl.obolibrary.org/obo/PATO_0000780", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete function" + "lbl" : "obsolete relative locomotor activity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002350", + "id" : "http://purl.obolibrary.org/obo/PATO_0000783", "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the stalk of an organism relative to another entity.", - "xrefs" : [ "merriam-webster:http://www.merriam-webster.com/dictionary/cauline" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T04:13:06Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "cauline to" + "lbl" : "obsolete digestive function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002355", + "id" : "http://purl.obolibrary.org/obo/PATO_0000782", "meta" : { - "definition" : { - "val" : "A quality of a physical object that is currently realizing none of its functions.", - "xrefs" : [ "PATOC:RH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete defensive function value" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002304", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T04:52:14Z" + "pred" : "http://purl.org/dc/terms/creator", + "val" : "cjm" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002354" + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "cjm" } ] }, - "type" : "CLASS", - "lbl" : "inactive" + "type" : "PROPERTY", + "lbl" : "causally upstream of, positive effect" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001024", + "id" : "http://purl.obolibrary.org/obo/GO_0098796", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's rate of doing work.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Power" ] + "val" : "Any protein complex that is part of a membrane.", + "xrefs" : [ "GOC:dos" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "cellular_component" } ] }, "type" : "CLASS", - "lbl" : "power" + "lbl" : "membrane protein complex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000176", + "id" : "http://purl.obolibrary.org/obo/GO_0098797", "meta" : { + "definition" : { + "val" : "Any protein complex that is part of the plasma membrane.", + "xrefs" : [ "GOC:dos" ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "cellular_component" } ] }, "type" : "CLASS", - "lbl" : "obsolete metabolic function" + "lbl" : "plasma membrane protein complex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002356", + "id" : "http://purl.obolibrary.org/obo/PATO_0000796", "meta" : { - "definition" : { - "val" : "A quality of a physical object that has been constantly realizing some of its functions.", - "xrefs" : [ "PATOC:RH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - 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"val" : "2012-01-31T04:51:42Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "activation quality" + "lbl" : "obsolete urination value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000178", + "id" : "http://purl.obolibrary.org/obo/PATO_0000799", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -39035,63 +39786,48 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative function" + "lbl" : "obsolete muscle elevation value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001022", + "id" : "http://purl.obolibrary.org/obo/PATO_0000790", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the amount of momentum caused a certain force will produce over time.", - "xrefs" : [ "url:http://www.wikipremed.com/home_resources/010104_momentum_concepts.pdf" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "impulse" + "lbl" : "obsolete heart rate value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002354", + "id" : "http://purl.obolibrary.org/obo/PATO_0000792", "meta" : { - "definition" : { - "val" : "A quality of an physical object that is currently realizing one of its functions.", - "xrefs" : [ "PATOC:RH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T04:52:04Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - 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"xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal duration" + "lbl" : "obsolete autonomic function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045085", + "id" : "http://purl.obolibrary.org/obo/PATO_0000729", "meta" : { - "definition" : { - "val" : "A duration quality of temperature quality of a process which is relatively normal.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal duration of temperature" + "lbl" : "obsolete physiological function value" }, { - 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"id" : "http://purl.obolibrary.org/obo/PATO_0000183", + "id" : "http://purl.obolibrary.org/obo/PATO_0000738", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete limb tone" + "lbl" : "obsolete enzyme function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002363", + "id" : "http://purl.obolibrary.org/obo/PATO_0000737", "meta" : { - "definition" : { - "val" : "A medium brown color with a metallic sheen, resembles the actual alloy bronze.", - "xrefs" : [ "PATO:LC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-05-03T11:08:18Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "bronze" + "lbl" : "obsolete functional value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001032", + "id" : "http://purl.obolibrary.org/obo/PATO_0000739", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000140" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete absolute enzyme function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000182", + "id" : "http://purl.obolibrary.org/obo/PATO_0000730", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -39408,158 +40135,104 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete abdominal tone" + "lbl" : "obsolete relative function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000185", + "id" : "http://purl.obolibrary.org/obo/PATO_0000732", "meta" : { - "definition" : { - "val" : "A behavioral quality inhering in a bearer by virtue of having physical steadiness.", - "xrefs" : [ "thefreedictionary:thefreedictionary" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "balance" + "lbl" : "obsolete body tone value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0025000", + "id" : "http://purl.obolibrary.org/obo/PATO_0000731", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to being fit to be used as a safe means of hydration.", - "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "drinkability", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2015-09-01T16:16:44Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "pbuttigieg" } ] }, "type" : "CLASS", - "lbl" : "potability" + "lbl" : "obsolete body position value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002360", + "id" : "http://purl.obolibrary.org/obo/PATO_0000734", "meta" : { - "definition" : { - "val" : "A disposition that can be compared on a linear scale - that is that it can be increased or decreased.", - "xrefs" : [ "PATOC:RH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-03-16T06:31:50Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "tendency" + "lbl" : "obsolete abdominal tone value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002361", + "id" : "http://purl.obolibrary.org/obo/PATO_0000733", "meta" : { - "definition" : { - "val" : "A tendency which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002362" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-03-16T06:31:57Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "increased tendency" + "lbl" : "obsolete piloerection value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001030", + "id" : "http://purl.obolibrary.org/obo/GO_0007165", "meta" : { "definition" : { - "val" : "A physical quality that exists by virtue of the rate of flow of the bearer across a given surface.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. 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For signaling between cells, signal transduction is restricted to events at and within the receiving cell.", + "xrefs" : [ "GOC:go_curators", "GOC:mtg_signaling_feb11" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "flux" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045050", - "meta" : { - "definition" : { - "val" : "A size quality which is relatively normal or average", + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "xrefs" : [ { + "val" : "Wikipedia:Signal_transduction" + }, { + "val" : "MIPS_funcat:30" + } ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "signalling pathway", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "signaling cascade", "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "hasRelatedSynonym", + "val" : "signaling pathway", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - } ] - }, - "type" : "CLASS", - "lbl" : "normal size" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0025001", - "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer not being suitable for use as a safe means of hydration.", - "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "undrinkable", + "pred" : "hasNarrowSynonym", + "val" : "signalling cascade", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0025002" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that signal transduction is defined broadly to include a ligand interacting with a receptor, downstream signaling steps and a response being triggered. 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"definition" : { - "val" : "Male quality of having complete, unaltered reproductive organs.", - "xrefs" : [ "PATOC:MF" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-05-03T11:19:06Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "intact male" + "lbl" : "obsolete limb tone value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000187", + "id" : "http://purl.obolibrary.org/obo/PATO_0000749", "meta" : { - "definition" : { - "val" : "A relational quality of occurrent inhering in a bearer by virtue of the bearer's ability to consume a resource.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "propensity to consume", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Use GO:0007631" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete consumption quality" + "lbl" : "obsolete gait value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0025002", + "id" : "http://purl.obolibrary.org/obo/PATO_0000748", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer being suitable for use as a safe means of hydration.", - "xrefs" : [ "Wikipedia:https://en.wikipedia.org/wiki/Drinking_water" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "drinkable", - 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"synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "force amplitude", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "force" + "lbl" : "obsolete high enzyme function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000186", + "id" : "http://purl.obolibrary.org/obo/PATO_0000740", "meta" : { - "definition" : { - "val" : "An organismal quality inhering in a bearer by virtue of the bearer's behavior aggregate of the responses or reactions or movements in a given situation.", - "xrefs" : [ "PATOC:GVG" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "behavioural quality", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001722" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "behavioral quality" + "lbl" : "obsolete relative enzyme function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001036", + "id" : "http://purl.obolibrary.org/obo/PATO_0000743", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -39700,69 +40321,48 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative life span" + "lbl" : "obsolete arousal value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002367", + "id" : "http://purl.obolibrary.org/obo/PATO_0000742", "meta" : { - "definition" : { - "val" : "Male quality of being incapable to reproduce because of functional loss of the testicles from surgical removal or chemical means.", - "xrefs" : [ "PATOC:MF" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-05-03T11:22:29Z" } ] }, "type" : "CLASS", - "lbl" : "castrated male" + "lbl" : "obsolete low enzyme function value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002364", + "id" : "http://purl.obolibrary.org/obo/PATO_0000745", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001154" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - 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"id" : "http://purl.obolibrary.org/obo/PATO_0001033", + "id" : "http://purl.obolibrary.org/obo/PATO_0000747", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -39773,339 +40373,263 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete stiffness" + "lbl" : "obsolete coordination value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000188", + "id" : "http://purl.obolibrary.org/obo/PATO_0000746", "meta" : { - "definition" : { - "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's having or lacking skillful and effective interaction of movement.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000706" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute amplitude" + "lbl" : "decreased threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000194", + "id" : "http://purl.obolibrary.org/obo/PATO_0000701", "meta" : { + "definition" : { + "val" : "A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000700" } ] }, "type" : "CLASS", - 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"lbl" : "susceptibility toward" + "lbl" : "positive regulation of protein binding" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002374", + "id" : "http://purl.obolibrary.org/obo/GO_0032091", "meta" : { "definition" : { - "val" : "Recurrent and often more or less cyclic alteration.", - "xrefs" : [ "PATOC:DS" ] + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of protein binding.", + "xrefs" : [ "GOC:mah" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of protein binding", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of protein binding", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" + } ] + }, + "type" : "CLASS", + "lbl" : "negative regulation of protein binding" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000716", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000499" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-07-05T01:52:36Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "fluctuating" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002371", + "id" : "http://purl.obolibrary.org/obo/PATO_0000715", "meta" : { - "definition" : { - "val" : "A viviparous organism having given birth one time.", - "xrefs" : [ "wiki:http://en.wikipedia.org/wiki/Parity_(biology)" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-05-03T11:29:38Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000498" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "primiparous" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045060", + "id" : "http://purl.obolibrary.org/obo/PATO_0000718", "meta" : { "definition" : { - "val" : "A volume which is relatively normal or average", - "xrefs" : [ ] + "val" : "A viability quality inhering in a population by virtue of the bearer's long term survival inability.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "normal volume" + "lbl" : "lethal (sensu genetics)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000196", + "id" : "http://purl.obolibrary.org/obo/PATO_0000717", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -40318,77 +40929,66 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete vocalization" + "lbl" : "obsolete viability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001040", + "id" : "http://purl.obolibrary.org/obo/GO_0004872", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/GO_0038023" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative ratio" + "lbl" : "receptor activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002372", + "id" : "http://purl.obolibrary.org/obo/PATO_0000719", "meta" : { "definition" : { - "val" : "A viviparous organism that has given birth five or more times.", - "xrefs" : [ "wiki:http://en.wikipedia.org/wiki/Parity_(biology)" ] + "val" : "A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-05-03T11:30:28Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "grand multiparous" + "lbl" : "viable" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000195", + "id" : "http://purl.obolibrary.org/obo/PATO_0000710", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete startle response" + "lbl" : "obsolete time value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045061", + "id" : "http://purl.obolibrary.org/obo/PATO_0000712", "meta" : { - "definition" : { - "val" : "A width which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "normal width" + "lbl" : "obsolete bouts value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001041", + "id" : "http://purl.obolibrary.org/obo/PATO_0000711", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -40399,33 +40999,22 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative amplitude" + "lbl" : "obsolete absolute time value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002377", + "id" : "http://purl.obolibrary.org/obo/PATO_0000714", "meta" : { - "definition" : { - "val" : "A structure quality inhering in a bearer by virtue of the bearer's being not filed with air.", - "xrefs" : [ "PATOC:CVS" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-07-05T02:56:07Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002376" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "uninflated" + "lbl" : "obsolete latency value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000198", + "id" : "http://purl.obolibrary.org/obo/PATO_0000713", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -40436,53 +41025,43 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute consumption" + "lbl" : "obsolete relative time value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001046", + "id" : "http://purl.obolibrary.org/obo/go#goslim_mouse", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to resist to a stimulus.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "resistance", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001043" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Mouse GO slim" } ] }, - "type" : "CLASS", - "lbl" : "resistance to" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002378", + "id" : "http://purl.obolibrary.org/obo/GO_0098772", "meta" : { "definition" : { - "val" : "Having a shape that resembles a many-lobed \"berry,\" such as a raspberry.", - "xrefs" : [ "wikipedia:https://en.wikipedia.org/wiki/Acinus" ] + "val" : "A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators.", + "xrefs" : [ "GOC:dos", "GOC:pt" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-07-05T02:58:05Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "molecular_function" } ] }, "type" : "CLASS", - "lbl" : "acinus" + "lbl" : "molecular function regulator" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000197", + "id" : "http://purl.obolibrary.org/obo/ENVO_00002297", + "meta" : { + "definition" : { + "val" : "A material entity which determines an environmental system.", + "xrefs" : [ "DOI:10.1186/2041-1480-4-43", "NM:nm", "ORCID:0000-0002-4366-3088" ] + } + }, + "type" : "CLASS", + "lbl" : "environmental feature" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001174", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -40493,9 +41072,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete transfer_arousal" + "lbl" : "obsolete urine composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001047", + "id" : "http://purl.obolibrary.org/obo/PATO_0001175", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -40506,85 +41085,73 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute resistance" + "lbl" : "obsolete urine composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001044", + "id" : "http://purl.obolibrary.org/obo/PATO_0001172", "meta" : { + "definition" : { + "val" : "An elasticity quality inhering in a bearer by virtue of the bearer's inability to recover its size and shape after deformation in any way.", + "xrefs" : [ "merriam-webster:merriam-webster" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001171" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute power" + "lbl" : "inelastic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002375", + "id" : "http://purl.obolibrary.org/obo/PATO_0001173", "meta" : { - "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a trumpet.", - "xrefs" : [ "PATOC:DS" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-07-05T02:45:17Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "trumpet-shaped" + "lbl" : "obsolete urine glucose composition value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002376", + "id" : "http://purl.obolibrary.org/obo/PATO_0001178", "meta" : { "definition" : { - "val" : "A structure quality inhering in a bearer by virtue of the bearer's being filled with air.", - "xrefs" : [ "PATOC:CVS" ] + "val" : "A resistance quality inhering in a bearer by virtue of the bearer's resistance to a stimulus.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "air-filled", + "val" : "resistant", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-07-05T02:55:10Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002377" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "inflated" + "lbl" : "resistant to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001045", + "id" : "http://purl.obolibrary.org/obo/PATO_0001179", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative power" + "lbl" : "obsolete immune" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000199", + "id" : "http://purl.obolibrary.org/obo/PATO_0001176", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -40595,114 +41162,83 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative consumption" + "lbl" : "obsolete deaf" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045066", + "id" : "http://purl.obolibrary.org/obo/PATO_0001177", "meta" : { - "definition" : { - "val" : "A susceptibility toward an external stimulus which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal susceptibility toward" + "lbl" : "obsolete blind" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045067", + "id" : "http://purl.obolibrary.org/obo/PATO_0001170", "meta" : { - "definition" : { - "val" : "A temperature which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal temperature" + "lbl" : "obsolete numerical value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045068", + "id" : "http://purl.obolibrary.org/obo/PATO_0001171", "meta" : { "definition" : { - "val" : "A tendency which is relatively normal or average", - "xrefs" : [ ] + "val" : "An elasticity quality inhering in a bearer by virtue of the bearer's ability to recover its size and shape after deformation in any way.", + "xrefs" : [ "merriam-webster:merriam-webster" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001172" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal tendency" + "lbl" : "elastic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045069", + "id" : "http://purl.obolibrary.org/obo/PATO_0001185", "meta" : { "definition" : { - "val" : "A threshold which is relatively normal or average", - "xrefs" : [ ] + "val" : "A maturity quality inhering in a bearer by virtue of the bearer's indirect development, undergoing metamorphosis.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Larval" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "normal threshold" + "lbl" : "larval" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045062", + "id" : "http://purl.obolibrary.org/obo/PATO_0001186", "meta" : { "definition" : { - "val" : "A solubility which is relatively normal or average", - "xrefs" : [ ] + "val" : "A maturity quality inhering in a bearer by virtue of the bearer's being at the age immediately before puberty.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "normal solubility" + "lbl" : "prepubescent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000190", + "id" : "http://purl.obolibrary.org/obo/PATO_0001183", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -40713,106 +41249,117 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete gait" + "lbl" : "obsolete absolute response value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002370", + "id" : "http://purl.obolibrary.org/obo/RO_0001900", "meta" : { "definition" : { - "val" : "The number of time that a viviparous organism has given birth.", - "xrefs" : [ "wiki:http://en.wikipedia.org/wiki/Parity_(biology)" ] + "val" : "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/ROAndTime" + } ] + }, + "type" : "PROPERTY", + "lbl" : "temporal interpretation" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0001901", + "meta" : { + "definition" : { + "val" : "\n\n## Elucidation\n\nThis is used when the statement/axiom is assumed to hold true 'eternally'\n\n## How to interpret (informal)\n\nFirst the \"atemporal\" FOL is derived from the OWL using the standard\ninterpretation. This axiom is temporalized by embedding the axiom\nwithin a for-all-times quantified sentence. The t argument is added to\nall instantiation predicates and predicates that use this relation.\n\n## Example\n\n Class: nucleus\n SubClassOf: part_of some cell\n\n forall t :\n forall n :\n instance_of(n,Nucleus,t)\n implies\n exists c :\n instance_of(c,Cell,t)\n part_of(n,c,t)\n\n## Notes\n\nThis interpretation is *not* the same as an at-all-times relation\n\n", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "axiom holds for all times" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001184", + "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-05-03T11:27:56Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "parity" + "lbl" : "obsolete maturity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045063", + "id" : "http://purl.obolibrary.org/obo/PATO_0001189", "meta" : { "definition" : { - "val" : "A speed which is relatively normal or average", - "xrefs" : [ ] + "val" : "A maturity quality inhering in a bearer by virtue of the bearer's being between the onset of puberty and maturity.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "normal speed" + "lbl" : "adolescent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000192", + "id" : "http://purl.obolibrary.org/obo/PATO_0001187", "meta" : { + "definition" : { + "val" : "A maturity quality inhering in a insect by virtue of the bearer's being in the chrysalis (cocoon) or post larval stage.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete locomotor_activity" + "lbl" : "pupal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045064", + "id" : "http://purl.obolibrary.org/obo/PATO_0001188", "meta" : { "definition" : { - "val" : "A strength which is relatively normal or average", - "xrefs" : [ ] + "val" : "A maturity quality inhering in a bearer by virtue of the bearer's being in an inactive stage in the development of some insects, between the larval and the pupal stages.", + "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "normal strength" + "lbl" : "prepupal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045065", + "id" : "http://purl.obolibrary.org/obo/PATO_0001181", "meta" : { - "definition" : { - "val" : "A fatigability which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute response" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001182", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal fatigability" + "lbl" : "obsolete relative response" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000191", + "id" : "http://purl.obolibrary.org/obo/PATO_0001180", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -40823,139 +41370,148 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete learning_and memory" + "lbl" : "obsolete relative response" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045037", + "id" : "http://purl.obolibrary.org/obo/PATO_0001196", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a normal or average extent.", - "xrefs" : [ ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the abdomen of an organism relative to another entity.", + "xrefs" : [ "PATOC:nw" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "anterior_ to", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "normal phosphorylation" + "lbl" : "ventral to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045038", + "id" : "http://purl.obolibrary.org/obo/PATO_0001197", "meta" : { - "definition" : { - "val" : "A photosensitivity which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "normal photosensitivity" + "lbl" : "obsolete modified direction" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045039", + "id" : "http://purl.obolibrary.org/obo/PATO_0001194", "meta" : { "definition" : { - "val" : "A degree of pigmentation quality which is relatively normal or average", - "xrefs" : [ ] + "val" : "A response quality inhering in a bearer by virtue of the bearer's limited reaction to a stimulus or an agent.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "decreased responsivity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "hyporesponsive", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001192" } ] }, "type" : "CLASS", - "lbl" : "normal pigmentation" + "lbl" : "hyporesponsive to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002304", + "id" : "http://purl.obolibrary.org/obo/PATO_0001195", "meta" : { "definition" : { - "val" : "A quality of a process that has a value that is increased compared to normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located more centrally than another entity.", + "xrefs" : [ "PATOC:nw" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-16T06:53:08Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased process quality" + "lbl" : "proximal to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000125", + "id" : "http://purl.obolibrary.org/obo/PATO_0001198", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete unmodified direction" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001199", "meta" : { "definition" : { - "val" : "A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being narrow, with the two opposite margins parallel.", + "xrefs" : [ "ISBN:0881923214" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "mass" + "lbl" : "linear" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001457", + "id" : "http://purl.obolibrary.org/obo/PATO_0001192", "meta" : { "definition" : { - "val" : "A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation.", + "val" : "A response quality inhering in a bearer by virtue of the bearer's excessive reaction to a stimulus or an agent.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "sensitivity of occurrent", + "val" : "increased responsivity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "hyperresponsive", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001194" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sensitivity of a process" + "lbl" : "hyperresponsive to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001458", + "id" : "http://purl.obolibrary.org/obo/PATO_0001193", "meta" : { "definition" : { - "val" : "A sensitivity of a process quality inhering in a bearer by virtue of the bearer's unfolding in a location with or without oxygen.", + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the side relative to another entity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "sensitivity of occurrent to oxygen", + "val" : "lateral", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -40964,86 +41520,76 @@ } ] }, "type" : "CLASS", - "lbl" : "sensitivity of a process to oxygen" + "lbl" : "lateral to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000124", + "id" : "http://purl.obolibrary.org/obo/PATO_0001190", "meta" : { + "definition" : { + "val" : "A maturity quality inhering in a bearer by virtue the bearer's being not fully grown or developed.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative length" + "lbl" : "juvenile" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002305", + "id" : "http://purl.obolibrary.org/obo/PATO_0001191", "meta" : { "definition" : { - "val" : "A quality of an object that has a value that is increased compared to normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located toward the middle relative to another entity.", + "xrefs" : [ "PATOC:nw" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-16T06:54:01Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased object quality" + "lbl" : "medial to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001455", + "id" : "http://purl.org/dc/elements/1.1/source", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's dependence on oxygen.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001456" + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "dc-source" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "aerobic" + "type" : "PROPERTY", + "lbl" : "derived from resource" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002302", + "id" : "http://purl.obolibrary.org/obo/PATO_0002469", "meta" : { "definition" : { - "val" : "A quality of a process that has a value that is decreased compared to normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Structural quality inhereing in a bearer in which a joint has apposed bony surfaces united by fibrous tissue, permitting no movement; found only between bones.", + "xrefs" : [ "PATOC:WD" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-16T06:50:59Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T11:55:50Z" } ] }, "type" : "CLASS", - "lbl" : "decreased process quality" + "lbl" : "sutured to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000127", + "id" : "http://purl.obolibrary.org/obo/PATO_0001138", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -41054,50 +41600,56 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative mass" + "lbl" : "obsolete ig m concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001456", + "id" : "http://purl.obolibrary.org/obo/PATO_0001139", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's independence on oxygen.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001455" } ] }, "type" : "CLASS", - "lbl" : "anaerobic" + "lbl" : "obsolete urine glucose composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002303", + "id" : "http://purl.obolibrary.org/obo/PATO_0002467", "meta" : { "definition" : { - "val" : "A quality of an object that has a value that is decreased compared to normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer resembling a thin narrow strip.", + "xrefs" : [ "PATOC:WD" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002305" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T11:47:11Z" + } ] + }, + "type" : "CLASS", + "lbl" : "lathlike" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001136", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-16T06:51:54Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "decreased object quality" + "lbl" : "obsolete ig e concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000126", + "id" : "http://purl.obolibrary.org/obo/PATO_0001137", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -41108,104 +41660,102 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute mass" + "lbl" : "obsolete ig g concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002308", + "id" : "http://purl.obolibrary.org/obo/PATO_0002468", "meta" : { "definition" : { - "val" : "A triangular quality inhering in a bearer by virtue of the bearer's having all sides of unequal length.", - "xrefs" : [ "PATOC:JB" ] + "val" : "A structure quality inhering in a bearer by virtue of the bearer's being capable of swelling or stretching.", + "xrefs" : [ "PATOC:WD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T11:48:26Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-27T11:24:24Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "scalene triangular" + "lbl" : "distensible" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000129", + "id" : "http://purl.obolibrary.org/obo/PATO_0001130", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute weight" + "lbl" : "obsolete ratio value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002309", + "id" : "http://purl.obolibrary.org/obo/PATO_0002461", "meta" : { "definition" : { - "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's exhibiting a by virtue of the bearer's exhibiting a consistently sized and approximately round cross-section along its length, which is many times larger than its diameter.", - "xrefs" : [ "PATOC:DC" ] + "val" : "To bend or hang downwards due to loss of water", + "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that a fiber shaped object may take any circuitous or straight path through space (think of a length of string or rope)." + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-09-09T04:50:10Z" + "val" : "2013-04-09T06:06:14Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "fiber shaped" + "lbl" : "wilty" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000128", + "id" : "http://purl.obolibrary.org/obo/PATO_0002462", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer that has mass near a gravitational body.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Weight" ] + "val" : "A composition quality inhering in an bearer by virtue of the bearer's consisting of collagen.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T11:34:15Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "weight" + "lbl" : "collagenous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001459", + "id" : "http://purl.obolibrary.org/obo/PATO_0001131", "meta" : { - "definition" : { - "val" : "A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001460" } ] }, "type" : "CLASS", - "lbl" : "aerobic (for occurrence)" + "lbl" : "obsolete absolute ratio value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002306", + "id" : "http://purl.obolibrary.org/obo/PATO_0002460", "meta" : { "definition" : { - "val" : "A triangular quality inhering in a bearer by virtue of the bearer's having all sides of the same length.", - "xrefs" : [ "PATOC:JB" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer being smaller and contracted, expecially due to loss of moisture.", + "xrefs" : [ "PATOC:JL" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -41213,116 +41763,110 @@ "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-27T11:22:50Z" + "val" : "2013-04-09T06:05:18Z" } ] }, "type" : "CLASS", - "lbl" : "equilateral triangular" + "lbl" : "shriveled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002307", + "id" : "http://purl.obolibrary.org/obo/PATO_0002465", "meta" : { "definition" : { - "val" : "A triangular quality inhering in a bearer by virtue of the bearer's having two sides have the same length.", - "xrefs" : [ "PATOC:JB" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's resembling a prism.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "tent shaped", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-27T11:23:52Z" + "val" : "2013-09-15T11:44:03Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "isosceles triangular" + "lbl" : "prism shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001450", + "id" : "http://purl.obolibrary.org/obo/PATO_0001134", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete ig a concentration" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002466", "meta" : { "definition" : { - "val" : "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of extracellular fluid.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer resembling a keyhole.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "oedema", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "oedemic", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "oedematous", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "edemic", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "edema", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T11:45:53Z" } ] }, "type" : "CLASS", - "lbl" : "edematous" + "lbl" : "keyhole shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001453", + "id" : "http://purl.obolibrary.org/obo/PATO_0001135", "meta" : { - "definition" : { - "val" : "An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "detached", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "detached from" + "lbl" : "obsolete ig d concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002300", + "id" : "http://purl.obolibrary.org/obo/PATO_0002463", "meta" : { "definition" : { - "val" : "A quality that has a value that is increased compared to normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of some aspect of the bearer extending to the position of another entity.", + "xrefs" : [ "PATOC:WD" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002301" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-16T06:39:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T11:41:00Z" } ] }, "type" : "CLASS", - "lbl" : "increased quality" + "lbl" : "extends to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000121", + "id" : "http://purl.obolibrary.org/obo/PATO_0001132", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -41333,9 +41877,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative height" + "lbl" : "obsolete relative ratio value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000120", + "id" : "http://purl.obolibrary.org/obo/PATO_0001133", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -41346,65 +41890,44 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute height" + "lbl" : "obsolete immunoglobulin concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002301", + "id" : "http://purl.obolibrary.org/obo/PATO_0002464", "meta" : { "definition" : { - "val" : "A quality that has a value that is decreased compared to normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A positional quality inhering in a bearer by virtue of some aspect of the bearer extending past the position of another entity.", + "xrefs" : [ "PATOC:WD" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-16T06:40:15Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002300" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T11:42:15Z" } ] }, "type" : "CLASS", - "lbl" : "decreased quality" + "lbl" : "extends beyond" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001454", + "id" : "http://purl.obolibrary.org/obo/PATO_0001149", "meta" : { - "definition" : { - "val" : "A sensitivity quality inhering in a bearer by virtue of the bearer's dependence on oxygen.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "sensitivity to oxygen" + "lbl" : "obsolete susceptibility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001451", + "id" : "http://purl.obolibrary.org/obo/PATO_0001147", "meta" : { - "definition" : { - "val" : "An extended swelling in plant organs caused primarily by an excessive accumulation of water.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] - }, - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "oedematous", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "oedemic", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "edemic", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -41414,595 +41937,612 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete edematous (sensu botany)" + "lbl" : "obsolete absolute resistance value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000123", + "id" : "http://purl.obolibrary.org/obo/PATO_0002478", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented transversely relative to the long axis of the bearer.", + "xrefs" : [ "PATOC:DS" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T12:29:15Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute length" + "lbl" : "transversely striated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000122", + "id" : "http://purl.obolibrary.org/obo/PATO_0002479", "meta" : { "definition" : { - "val" : "A 1-D extent quality which is equal to the distance between two points.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented obliquely relative to the long axis of the bearer.", + "xrefs" : [ "PATOC:DS" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T12:29:42Z" } ] }, "type" : "CLASS", - "lbl" : "length" + "lbl" : "obliquely striated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001452", + "id" : "http://purl.obolibrary.org/obo/PATO_0001148", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000141" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete relative resistance value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045033", + "id" : "http://purl.obolibrary.org/obo/UBERON_0001062", "meta" : { "definition" : { - "val" : "An odor quality of having relatively normal or average odor.", - "xrefs" : [ ] + "val" : "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species.", + "xrefs" : [ "http://orcid.org/0000-0001-9114-8737", "FMA:62955" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/uberon/core#upper_level" ], + "xrefs" : [ { + "val" : "NCIT:C12219" + }, { + "val" : "HAO:0000000" + }, { + "val" : "TAO:0100000" + }, { + "val" : "CARO:0000000" + }, { + "val" : "FBbt:10000000" + }, { + "val" : "AAO:0010841" + }, { + "val" : "EHDAA2:0002229" + }, { + "val" : "AEO:0000000" + }, { + "val" : "FMA:62955" + }, { + "val" : "WBbt:0000100" + }, { + "val" : "ZFA:0100000" + }, { + "val" : "XAO:0000000" + }, { + "val" : "TGMA:0001822" + }, { + "val" : "BIRNLEX:6" + }, { + "val" : "BILA:0000000" + }, { + "val" : "FBbt_root:00000000" + }, { + "val" : "UMLS:C1515976" + }, { + "val" : "MA:0000001" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, + "type" : "CLASS", + "lbl" : "anatomical entity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002472", + "meta" : { + "definition" : { + "val" : "A physical quality inhering in a bearer by virtue of the bearer's decreased rate of change of the position.", + "xrefs" : [ "PATOC:NV" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "val" : "2013-09-15T12:05:06Z" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002471" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "normal odor" + "lbl" : "decreased velocity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045034", + "id" : "http://purl.obolibrary.org/obo/PATO_0001141", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete ig a concentration value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002473", "meta" : { "definition" : { - "val" : "An osmolality which is relatively normal or average odor.", - "xrefs" : [ ] + "val" : "A disposition inhering in a tumour by virtue of the bearer's disposition to spontaneously arise.", + "xrefs" : [ "PATOC:NV" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "val" : "2013-09-15T12:07:08Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal osmolality" + "lbl" : "neoplastic, spontaneous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045035", + "id" : "http://purl.obolibrary.org/obo/PATO_0001142", "meta" : { - "definition" : { - "val" : "An osmolarity which is relatively normal or average odor.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "normal osmolarity" + "lbl" : "obsolete ig d concentration value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045036", + "id" : "http://purl.obolibrary.org/obo/PATO_0002470", "meta" : { "definition" : { - "val" : "A permeability which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A morphological quality between two bearers inhering that one bearer is subject to change the nature, function, or condition of itself to become the other.", + "xrefs" : [ "PATOC:LC" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T12:01:57Z" } ] }, "type" : "CLASS", - "lbl" : "normal permeability" + "lbl" : "transformed to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045030", + "id" : "http://purl.obolibrary.org/obo/PATO_0002471", "meta" : { "definition" : { - "val" : "A mass which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's increased rate of change of the position.", + "xrefs" : [ "PATOC:NV" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002472" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "val" : "2013-09-15T12:03:45Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "normal mass" + "lbl" : "increased velocity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045031", + "id" : "http://purl.obolibrary.org/obo/PATO_0001140", "meta" : { - "definition" : { - "val" : "A density which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete immunoglobulin concentration value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001145", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal mass density" + "lbl" : "obsolete ig m concentration value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045032", + "id" : "http://purl.obolibrary.org/obo/PATO_0002476", "meta" : { "definition" : { - "val" : "A mobility which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A position quality inhering in a bearer by virtue of the bearer's forming the end of another entity.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "val" : "2013-09-15T12:18:08Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal mobility" + "lbl" : "terminal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045048", + "id" : "http://purl.obolibrary.org/obo/PATO_0002477", "meta" : { "definition" : { - "val" : "A sensitivity to irradiation which is relatively normal or average", - "xrefs" : [ ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's disposition to breaks without significant deformation (strain) when subjected to stress.", + "xrefs" : [ "wikipedia:http://en.wikipedia.org/wiki/Brittleness" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "val" : "2013-09-15T12:25:03Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "normal sensitivity to irradiation" + "lbl" : "brittle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045049", + "id" : "http://purl.obolibrary.org/obo/PATO_0001146", "meta" : { - "definition" : { - "val" : "A sensitivity toward an external stimulus which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "normal sensitivity toward" + "lbl" : "obsolete resistance value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002315", + "id" : "http://purl.obolibrary.org/obo/PATO_0002474", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's resembling the end of a brush with a multitude of bristles.", - "xrefs" : [ "PATOC:BF" ] + "val" : "A flavor quality inhering in a bearer by virtue of the bearer's having an acrid, sharp, or disagreeable flavor.", + "xrefs" : [ "PATOC:LC" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-03T03:59:59Z" + "val" : "2013-09-15T12:09:15Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "brush-like shape" + "lbl" : "bitter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001468", + "id" : "http://purl.obolibrary.org/obo/PATO_0001143", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the back or upper surface of an organism.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "curved posterior (human torso)", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "curved superior (human head)", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "curved dorsal" + "lbl" : "obsolete ig e concentration value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000136", + "id" : "http://purl.obolibrary.org/obo/PATO_0002475", "meta" : { "definition" : { - "val" : "A morphological quality pertaining to the degree to which an object contains an opening, aperture, orifice or vent.", - "xrefs" : [ "PATOC:CJM", "PATOC:GVG" ] + "val" : "A position quality inhering in a bearer by virtue of the bearer's existing near the end of another entity.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-15T12:17:41Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "closure" + "lbl" : "subterminal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001469", + "id" : "http://purl.obolibrary.org/obo/PATO_0001144", "meta" : { - "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the abdomen of an organism.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "curved anterior (human torso)", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "curved inferior (human head)", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "curved ventral" + "lbl" : "obsolete ig g concentration value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002316", + "id" : "http://purl.obolibrary.org/obo/PATO_0002489", "meta" : { "definition" : { - "val" : "Being separate or discrete from other skeletal elements.", + "val" : "Overlap with quality inhering in a bearer by virtue of the bearer's being positioned under another entity so as to be covered by some portion of it.", "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "free", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-03T04:17:08Z" + "val" : "2013-10-10T04:13:04Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "autogenous" + "lbl" : "overlapped by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000135", + "id" : "http://purl.obolibrary.org/obo/PATO_0001158", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete relative_angle" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000138", - "meta" : { - "basicPropertyValues" : [ { + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute orientation" + "lbl" : "obsolete relative concentration value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002313", + "id" : "http://purl.obolibrary.org/obo/PATO_0001159", "meta" : { "definition" : { - "val" : "Having or resembling the shape of a telescope.", - "xrefs" : [ "PATOC:BF" ] + "val" : "A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-03T03:49:26Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "telescopic" + "lbl" : "concentrated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001466", + "id" : "http://purl.obolibrary.org/obo/PATO_0001152", "meta" : { "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the front of an organism.", + "val" : "A quality inhering in a bearer by virtue of the bearer's having susceptibilty toward an external stimulus.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "curved superior (human torso)", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "curved anterior", + "val" : "susceptible", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001153" } ] }, "type" : "CLASS", - "lbl" : "curved rostral" + "lbl" : "susceptible toward" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002314", + "id" : "http://purl.obolibrary.org/obo/PATO_0002483", "meta" : { "definition" : { - "val" : "Having the nature or characteristic of, a ligament; composed of the tissue proper to ligaments.", - 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"val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the part of the body from which the tail arises.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of an inverted letter V.", + "xrefs" : [ "PATOC:WD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "curved posterior", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "curved inferior (human torso)", + "pred" : "hasBroadSynonym", + "val" : "chevron shaped", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "curved caudal" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000137", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - 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"pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001152" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-12T12:47:48Z" } ] }, "type" : "CLASS", - "lbl" : "squircle" + "lbl" : "insusceptible toward" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000139", + "id" : "http://purl.obolibrary.org/obo/PATO_0001150", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative orientation" + "lbl" : "obsolete absolute susceptibility value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002317", + "id" : "http://purl.obolibrary.org/obo/PATO_0002481", "meta" : { "definition" : { - "val" : "A convex quadrilateral is a parallelogram if and only if any one of the following statements are true:\n1. Each diagonal divides the quadrilateral into two congruent triangles with the same orientation.\n2. The opposite sides are congruent in pairs.\n3. The diagonals bisect each other.\n4. The opposite angles are congruent in pairs.\n5. The sum of the squares of the sides equals the sum of the squares of the diagonals. (This is the parallelogram law)\n6.It possesses rotational symmetry.\n7.One pair of opposite sides are parallel and congruent.\n8.Two pairs of adjacent angles are supplementary.", - "xrefs" : [ "wikipedia:Parallelogram" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a slanting direction or position : neither perpendicular nor parallel.", + "xrefs" : [ "merriam-wester:http://www.merriam-webster.com/dictionary/oblique" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-12T12:33:07Z" + "val" : "2013-09-30T05:49:50Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "parallelogram" + "lbl" : "oblique orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002318", + "id" : "http://purl.obolibrary.org/obo/PATO_0002482", "meta" : { "definition" : { - "val" : "A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt", - "xrefs" : [ "wiktionary:superellipse" ] + "val" : "Shape quality inhering in a bearer by virtue of the bearer exhibiting a narrow and elongate opening.", + "xrefs" : [ "PATOC:WD" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "Lamé curve", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-12T12:45:16Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-30T05:51:39Z" } ] }, "type" : "CLASS", - "lbl" : "superelliptic" + "lbl" : "slit-like" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001460", + "id" : "http://purl.obolibrary.org/obo/PATO_0001151", "meta" : { - "definition" : { - "val" : "A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001459" } ] }, "type" : "CLASS", - 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"lbl" : "surface tension" + "lbl" : "single organismal process quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000130", + "id" : "http://purl.obolibrary.org/obo/PATO_0001156", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -42013,81 +42553,103 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative weight" + "lbl" : "obsolete relative concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000132", + "id" : "http://purl.obolibrary.org/obo/PATO_0001157", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete absolute concentration value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001464", + "id" : "http://purl.obolibrary.org/obo/PATO_0002488", "meta" : { "definition" : { - "val" : "A quality that is equal to the potential energy per unit charge associated with a static (time-invariant) electric field, also called the electrostatic potential.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Electric_potential" ] + "val" : "Overlap with quality inhering in a bearer by virtue of the bearer's being positioned over another entity so as to cover some portion of it.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-10-10T04:12:22Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "electric potential" + "lbl" : "overlapping" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002311", + "id" : "http://purl.obolibrary.org/obo/PATO_0001154", "meta" : { "definition" : { - "val" : "Having a fringe or border of hairlike or fingerlike projections.", - "xrefs" : [ "PATO:WS" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width.", + "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002364" + } ] + }, + "type" : "CLASS", + "lbl" : "elongated" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002485", + "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's possessing two sides that are at the same continuous distance relative to each other.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-09-22T03:52:11Z" + "val" : "2013-10-10T03:58:37Z" } ] }, "type" : "CLASS", - "lbl" : "fimbriated" + "lbl" : "parallel-sided" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002312", + "id" : "http://purl.obolibrary.org/obo/PATO_0002486", "meta" : { "definition" : { - "val" : "Consisting of segments or similar parts arranged in a longitudinal series.", - "xrefs" : [ "OED:" ] + "val" : "A quality inhering in a process by virtue of that process having two or more organisms as participants.", + "xrefs" : [ "PATOC:DS" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-03T03:42:23Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "2013-10-10T04:08:44Z" } ] }, "type" : "CLASS", - "lbl" : "segmented" + "lbl" : "multi-organismal process quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000131", + "id" : "http://purl.obolibrary.org/obo/PATO_0001155", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -42098,421 +42660,424 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative size" + "lbl" : "obsolete absolute concentration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001465", + "id" : "http://purl.obolibrary.org/obo/PATO_0002480", "meta" : { "definition" : { - "val" : "A malformed quality inhering in a bearer by virtue of the bearer's all-encompassing, grotesque morphological defects.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in an bearer by virtue of the bearer's possessing only minor levels of ossification.", + "xrefs" : [ "PATOC:AD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-09-30T05:47:07Z" } ] }, "type" : "CLASS", - 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"id" : "http://purl.obolibrary.org/obo/PATO_0002310", + "id" : "http://purl.obolibrary.org/obo/PATO_0002495", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being strong, thick or sturdy.", - "xrefs" : [ "PATOC:BF" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsally.", + "xrefs" : [ "PATOC:WD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "dorsally directed", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002494" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-09-20T06:23:31Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-10-10T05:15:24Z" } ] }, "type" : "CLASS", - "lbl" : "robust" + "lbl" : "dorsal orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045044", + "id" : "http://purl.obolibrary.org/obo/PATO_0001164", "meta" : { "definition" : { - "val" : "A pressure which is relatively normal or average", - "xrefs" : [ ] + "val" : "A physical quality which inheres in a bearer by virtue of the bearer's exhibiting density.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - 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}, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "normal position" + "lbl" : "anteroventral orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045041", + "id" : "http://purl.obolibrary.org/obo/PATO_0001167", "meta" : { "definition" : { - "val" : "An angle which is relatively normal or average", - "xrefs" : [ ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer being harmed or injured or spoiled, such that its functionality is impaired.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001168" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal angle to" + "lbl" : "damaged" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045042", + "id" : "http://purl.obolibrary.org/obo/PATO_0002498", "meta" : { "definition" : { - "val" : "A distribution which is relatively normal or average", - "xrefs" : [ ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed medially.", + "xrefs" : [ "PATOC:WD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "normal distribution" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045043", - "meta" : { - "definition" : { - "val" : "An elevation which is relatively normal or average", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "normal elevation" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045019", - "meta" : { - "definition" : { - "val" : "A female receptivity which is relatively normal or average.", + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "medially directed", "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "val" : "2013-10-10T05:17:30Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal female receptivity" + "lbl" : "medial orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045015", + "id" : "http://purl.obolibrary.org/obo/PATO_0002499", "meta" : { "definition" : { - "val" : "An efficiency which is relatively normal or average.", - "xrefs" : [ ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteriorly.", + "xrefs" : [ "PATOC:WD" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "posteriorly directed", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "val" : "2013-10-10T05:18:21Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "normal efficiency" + "lbl" : "posterior orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045016", + "id" : "http://purl.obolibrary.org/obo/PATO_0001168", "meta" : { "definition" : { - "val" : "An elasticity which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A structural quality inhering in a bearer by virtue of not being harmed or injured or spoiled.", + "xrefs" : [ "WordNet:WordNet" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001167" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "normal elasticity" + "lbl" : "undamaged" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045017", + "id" : "http://purl.obolibrary.org/obo/PATO_0002496", "meta" : { "definition" : { - "val" : "A fecundity which is relatively normal or average.", - "xrefs" : [ ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsolaterally.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "dorsolaterally directed", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "val" : "2013-10-10T05:16:04Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "normal fecundity" + "lbl" : "dorsolateral orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045018", + "id" : "http://purl.obolibrary.org/obo/PATO_0001165", "meta" : { - "definition" : { - "val" : "A female fertility which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal female fertility" + "lbl" : "obsolete urine enzyme composition value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002326", + "id" : "http://purl.obolibrary.org/obo/PATO_0002497", "meta" : { "definition" : { - "val" : "An orientation inhering in a bearer by virtue of the bearer's placement at an angle.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed laterally.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "laterally directed", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-10-10T05:16:45Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "gkoutos" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-11-23T12:06:09Z" } ] }, "type" : "CLASS", - "lbl" : "angle" + "lbl" : "lateral orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000147", + "id" : "http://purl.obolibrary.org/obo/PATO_0001166", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -42523,63 +43088,68 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute temperature" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001479", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001852" - } ] - }, - "type" : "CLASS" + "lbl" : "obsolete urine enzyme composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002327", + "id" : "http://purl.obolibrary.org/obo/PATO_0002490", "meta" : { "definition" : { - "val" : "An angle which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteriorly.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "anteriorly directly", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002328" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-11-23T12:06:38Z" + "val" : "2013-10-10T05:11:26Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "increased angle to" + "lbl" : "anterior orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000146", + "id" : "http://www.geneontology.org/formats/oboInOwl#SubsetProperty", + "type" : "PROPERTY", + "lbl" : "subset_property" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0002491", "meta" : { "definition" : { - "val" : "A physical quality of the thermal energy of a system.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodorsally.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "anterodorsally directed", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002526" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "gkoutos" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2013-10-10T05:12:15Z" } ] }, "type" : "CLASS", - "lbl" : "temperature" + "lbl" : "anterodorsal orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000149", + "id" : "http://purl.obolibrary.org/obo/PATO_0001160", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -42590,89 +43160,73 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative temperature" + "lbl" : "obsolete unconcentrated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001477", + "id" : "http://purl.obolibrary.org/obo/PATO_0001578", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being drawn in or pulled back from any given point.", - "xrefs" : [ "Dictionary.com:Dictionary.com" ] + "val" : "A permeability which is relatively low.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasBroadSynonym", - "val" : "moved", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "retruded", + "pred" : "hasExactSynonym", + "val" : "low permeability", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001577" } ] }, "type" : "CLASS", - "lbl" : "retracted" + "lbl" : "decreased permeability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002324", + "id" : "http://purl.obolibrary.org/obo/PATO_0000246", "meta" : { - "definition" : { - "val" : "The temporal relation between the end of the process with respect to a reference process.", - "xrefs" : [ "PATOC:LC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "extent", - "xrefs" : [ "GOC:CJM" ] + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "hasRelatedSynonym", - "val" : "completeness", - "xrefs" : [ "GOC:CJM" ] - } ], + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete postural reflex" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000245", + "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-11-23T11:46:00Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "offset quality" + "lbl" : "obsolete pinna reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002325", + "id" : "http://purl.obolibrary.org/obo/PATO_0001579", "meta" : { "definition" : { - "val" : "The temporal relation between the start of the process with respect to a reference process.", - "xrefs" : [ "PATOC:LC" ] + "val" : "A physical quality that is the ability to contract or shrink.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "initiation", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-11-23T11:47:34Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "onset quality" + "lbl" : "contractility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000148", + "id" : "http://purl.obolibrary.org/obo/PATO_0000248", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -42683,237 +43237,161 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete body temperature" + "lbl" : "obsolete pupillary reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001478", + "id" : "http://purl.obolibrary.org/obo/PATO_0001576", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being broken down; caved in.", - "xrefs" : [ "Dictionary.com:Dictionary.com" ] + "val" : "A pressure which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high pressure", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001575" } ] }, "type" : "CLASS", - "lbl" : "collapsed" + "lbl" : "increased pressure" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002328", + "id" : "http://purl.obolibrary.org/obo/PATO_0001577", "meta" : { "definition" : { - "val" : "An angle which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A permeability which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high permeability", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002327" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-11-23T12:06:54Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001578" } ] }, "type" : "CLASS", - "lbl" : "decreased angle to" + "lbl" : "increased permeability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002329", + "id" : "http://purl.obolibrary.org/obo/PATO_0000247", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's exhibiting a upward bending of its leaves or other plant parts.", - "xrefs" : [ "PATOC:DS" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T11:40:23Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "hyponastic" + "lbl" : "obsolete proboscis extension reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001471", + "id" : "http://purl.obolibrary.org/obo/PATO_0000249", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001665" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - } ] - }, - "type" : "CLASS" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001472", - "meta" : { - "definition" : { - "val" : "A depth which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "shallow", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "low depth", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001692" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001596" } ] }, "type" : "CLASS", - "lbl" : "decreased depth" + "lbl" : "obsolete righting reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000141", + "id" : "http://purl.obolibrary.org/obo/PATO_0001570", "meta" : { "definition" : { - "val" : "A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality of a process inhering in a bearer by virtue of the bearer's having fewer processual parts.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "relational structural quality", - "xrefs" : [ ] - }, { - "pred" : "hasBroadSynonym", - "val" : "conformation", - "xrefs" : [ "VT:1000738" ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001452" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "structure" + "lbl" : "having decreased processual parts" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001470", + "id" : "http://purl.obolibrary.org/obo/GO_0009892", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity.", - "xrefs" : [ "PATOC:nw" ] + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", + "xrefs" : [ "GOC:go_curators" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "proportionality", + "val" : "down regulation of metabolic process", "xrefs" : [ ] }, { - "pred" : "hasExactSynonym", - "val" : "ratio", + "pred" : "hasNarrowSynonym", + "val" : "inhibition of organismal metabolic process", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "rate", + "pred" : "hasExactSynonym", + "val" : "negative regulation of organismal metabolism", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "quotient", + "val" : "negative regulation of metabolism", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "proportion", + "val" : "downregulation of metabolic process", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Examples: height to weight; brain size to body size. These could all be children of proportionality. Proportions can be measured as ratios. Some measures may be dimensionless. Not all ratios measure proportionality, eg m/s measures velocity which is not a proportion in the sense defined above, it is a quality in its own right." - } ] - }, - "type" : "CLASS", - "lbl" : "proportionality to" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000140", - "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "relational spatial quality", + "pred" : "hasNarrowSynonym", + "val" : "negative regulation of multicellular organismal metabolic process", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "location", + "val" : "down-regulation of metabolic process", "xrefs" : [ ] }, { - "pred" : "hasExactSynonym", - "val" : "placement", + "pred" : "hasNarrowSynonym", + "val" : "inhibition of metabolic process", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001631" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001032" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "GO:0044252" } ] }, "type" : "CLASS", - "lbl" : "position" + "lbl" : "negative regulation of metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001475", + "id" : "http://purl.obolibrary.org/obo/PATO_0001571", "meta" : { "definition" : { - "val" : "A position which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A size quality inhering in a bearer by virtue of the bearer's being made wider or larger in all dimensions.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "high position", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001476" } ] }, "type" : "CLASS", - "lbl" : "increased position" + "lbl" : "dilated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000143", + "id" : "http://purl.obolibrary.org/obo/PATO_0000240", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -42924,72 +43402,82 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete addictive substance" + "lbl" : "obsolete contact righting reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002322", + "id" : "http://purl.obolibrary.org/obo/GO_0009893", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "definition" : { + "val" : "Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", + "xrefs" : [ "GOC:go_curators" ] + }, + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of metabolic process", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "hasExactSynonym", + "val" : "up-regulation of metabolic process", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-12T12:51:19Z" + "pred" : "hasExactSynonym", + "val" : "positive regulation of metabolism", + "xrefs" : [ ] }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002321" - } ] - }, - "type" : "CLASS", - "lbl" : "hyperelliptic" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002323", - "meta" : { - "definition" : { - "val" : "A temporal distribution pattern of process occurrences within a regulation/reference process.", - "xrefs" : [ "PATOC:LC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-11-22T01:12:28Z" + "pred" : "hasNarrowSynonym", + "val" : "up-regulation of organismal metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "positive regulation of organismal metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of organismal metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "positive regulation of multicellular organismal metabolic process", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of metabolic process", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of metabolic process", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044253" } ] }, "type" : "CLASS", - "lbl" : "temporal distribution quality" + "lbl" : "positive regulation of metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001476", + "id" : "http://purl.obolibrary.org/obo/PATO_0001574", "meta" : { "definition" : { - "val" : "A positional which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's motion characteristic.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "low position", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001475" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased position" + "lbl" : "flow rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000142", + "id" : "http://purl.obolibrary.org/obo/PATO_0000242", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -43000,35 +43488,11 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete substance" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002320", - "meta" : { - "definition" : { - "val" : "A superelptic shape inhering in a bearer by virtue of the bearer's shape resembling a diamond.", - "xrefs" : [ "PATO:WC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-12T12:49:06Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "diamond shaped" + "lbl" : "obsolete flinch reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000145", + "id" : "http://purl.obolibrary.org/obo/PATO_0000241", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a liquid; PATO:0001548 '" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { @@ -43037,593 +43501,555 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete liquid substance" + "lbl" : "obsolete corneal reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001473", + "id" : "http://purl.obolibrary.org/obo/PATO_0001575", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being present in two copies.", - "xrefs" : [ "Dictionary.com:Dictionary.com" ] + "val" : "A pressure which is relatively low.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "doubled", + "val" : "low pressure", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001576" } ] }, "type" : "CLASS", - "lbl" : "duplicated" + "lbl" : "decreased pressure" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000144", + "id" : "http://purl.obolibrary.org/obo/PATO_0001572", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001784" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a solid; 'PATO:0001546'" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "obsolete solid substance" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0071944", + "id" : "http://purl.obolibrary.org/obo/PATO_0000244", "meta" : { - "definition" : { - "val" : "The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures.", - "xrefs" : [ "GOC:mah" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "midori" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-10-04T01:51:47Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cell periphery" + "lbl" : "obsolete ocular reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001474", + "id" : "http://purl.obolibrary.org/obo/PATO_0001573", "meta" : { "definition" : { - "val" : "An oriented quality inhering in a bearer by virtue of the bearer's axis being positioned forward.", - "xrefs" : [ "bdid:bdid" ] + "val" : "A symmetry quality inhering in a bearer by virtue of the bearer's having equal dimensions or measurements.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "anteverted" + "lbl" : "isometrical" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002321", + "id" : "http://purl.obolibrary.org/obo/PATO_0000243", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002322" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-10-12T12:50:59Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "hypoelliptic" + "lbl" : "obsolete lordosis reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045011", + "id" : "http://purl.obolibrary.org/obo/PATO_0000257", "meta" : { - "definition" : { - "val" : "A contractility which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "normal contractility" + "lbl" : "obsolete absolute taste_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045012", + "id" : "http://purl.obolibrary.org/obo/PATO_0001589", "meta" : { "definition" : { - "val" : "A coordination which is relatively normal or average.", - "xrefs" : [ ] + "val" : "Increased, intensified.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#consider", + "val" : "PATO:0002017" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Obsoleted because it used to be a child of behavioral quality, which really meant increased magnitude of a given behavior. Now this can be done by using increased magnitude with another quality." } ] }, "type" : "CLASS", - "lbl" : "normal coordination" + "lbl" : "obsolete enhanced" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045013", + "id" : "http://purl.obolibrary.org/obo/PATO_0000256", "meta" : { - "definition" : { - "val" : "A curvature which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "normal curvature" + "lbl" : "obsolete taste type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045014", + "id" : "http://purl.obolibrary.org/obo/PATO_0001587", "meta" : { "definition" : { - "val" : "A distance which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A variability of rate which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high variability of rate", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001588" } ] }, "type" : "CLASS", - "lbl" : "normal distance" + "lbl" : "increased variability of rate" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0051098", + "id" : "http://purl.obolibrary.org/obo/PATO_0000259", "meta" : { - "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.", - "xrefs" : [ "GOC:ai" ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "regulation of binding" + "lbl" : "obsolete visual_ability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045010", + "id" : "http://purl.obolibrary.org/obo/PATO_0000258", "meta" : { - "definition" : { - "val" : "A concentration which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal concentration" + "lbl" : "obsolete relative taste_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0051099", + "id" : "http://purl.obolibrary.org/obo/PATO_0001588", "meta" : { "definition" : { - "val" : "Any process that activates or increases the rate or extent of binding, the selective interaction of a molecule with one or more specific sites on another molecule.", - "xrefs" : [ "GOC:ai" ] + "val" : "A variability of rate which is relatively low.", + "xrefs" : [ "PATO:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "up regulation of binding", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "upregulation of binding", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "stimulation of binding", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "activation of binding", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "up-regulation of binding", + "val" : "low variability of rate", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001587" } ] }, "type" : "CLASS", - "lbl" : "positive regulation of binding" + "lbl" : "decreased variability of rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045026", + "id" : "http://purl.obolibrary.org/obo/PATO_0001581", "meta" : { "definition" : { - "val" : "A life span which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A contractility which is relatively low.", + "xrefs" : [ "PATO:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low contractility", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001580" } ] }, "type" : "CLASS", - "lbl" : "normal life span" + "lbl" : "decreased contractility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045027", + "id" : "http://purl.obolibrary.org/obo/PATO_0001582", "meta" : { "definition" : { - "val" : "A magnetism which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A spatial quality inhering in an inactive muscle or muscle fibers by virtue of the bearer's exhibiting gradual lengthening.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "GO has now relevant relation terms which should be used instead." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "normal magnetism" + "lbl" : "obsolete relaxational quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045028", + "id" : "http://purl.obolibrary.org/obo/PATO_0000251", "meta" : { - "definition" : { - "val" : "A male fertility which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal male fertility" + "lbl" : "obsolete startle reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045029", + "id" : "http://purl.obolibrary.org/obo/PATO_0001580", "meta" : { "definition" : { - "val" : "A male receptivity which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A contractility which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high contractility", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001581" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal male receptivity" + "lbl" : "increased contractility" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0110165", + "id" : "http://purl.obolibrary.org/obo/PATO_0000250", "meta" : { - "definition" : { - "val" : "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex.", - "xrefs" : [ "GOC:kmv" ] - }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2019-08-12T18:01:37Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "kmv" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cellular anatomical entity" + "lbl" : "obsolete spinal reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000158", + "id" : "http://purl.obolibrary.org/obo/PATO_0000253", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000057" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete swallowing reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001006", + "id" : "http://purl.obolibrary.org/obo/PATO_0001585", "meta" : { + "definition" : { + "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to transmit of an entity through a medium.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Examples could be heat or electricity or sound." } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute latency" + "lbl" : "conductivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002337", + "id" : "http://purl.obolibrary.org/obo/PATO_0001586", "meta" : { "definition" : { - "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; characterized with an egg-shaped form crossed with a lance-head shaped form.", - "xrefs" : [ "PATOC:DD" ] + "val" : "A variability quality inhering in a bearer by virtue of whether the bearer exhibits rate variation or change.", + "xrefs" : [ "PATO:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T02:43:15Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "lance-ovate" + "lbl" : "variability of rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001007", + "id" : "http://purl.obolibrary.org/obo/PATO_0000252", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative latency" + "lbl" : "obsolete suckling reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002338", + "id" : "http://purl.obolibrary.org/obo/PATO_0001583", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle together forming three angles; attached at the broad end.", - "xrefs" : [ "PATOC:DD" ] + "val" : "A variability which is relatively low.", + "xrefs" : [ "PATO:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low variability", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T02:46:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001584" } ] }, "type" : "CLASS", - "lbl" : "lanceolate-triangular" + "lbl" : "decreased variability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000157", + "id" : "http://purl.obolibrary.org/obo/PATO_0000255", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute temporal" + "lbl" : "obsolete taste_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001488", + "id" : "http://purl.obolibrary.org/obo/PATO_0001584", "meta" : { "definition" : { - "val" : "A cellular quality inhering in a cell by virtue of whether the bearer exhibits the ability to move spontaneously.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A variability which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high variability", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001583" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Term should be obsoleted and the GO term cellular motility should be used instead." } ] }, "type" : "CLASS", - "lbl" : "cellular motility" + "lbl" : "increased variability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002335", + "id" : "http://purl.obolibrary.org/obo/PATO_0000254", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being dome-shaped.", - "xrefs" : [ "PATOC:dd" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T02:32:14Z" } ] }, "type" : "CLASS", - "lbl" : "tholiform" + "lbl" : "obsolete vibrissae reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001004", + "id" : "http://purl.obolibrary.org/obo/GO_0019222", "meta" : { + "definition" : { + "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.", + "xrefs" : [ "GOC:go_curators" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of metabolism", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "regulation of organismal metabolic process", + "xrefs" : [ "GOC:tb" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "regulation of multicellular organismal metabolic process", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044246" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute alternation value" + "lbl" : "regulation of metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001005", + "id" : "http://purl.obolibrary.org/obo/GO_0019220", "meta" : { "definition" : { - "val" : "A time quality inhering in a bearer by virtue of the time it elapses for the bearer to respond to a stimulus.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates.", + "xrefs" : [ "GOC:go_curators" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "regulation of phosphate metabolism", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This class is a candidate for obsoletion. The definition is not clear, and the placement under \"delayed\" is not consistent with the definition." + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "latency" + "lbl" : "regulation of phosphate metabolic process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002336", + "id" : "http://purl.obolibrary.org/obo/PATO_0000268", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having triangular faces that meet at a common point and containing a polygonal shaped base.", - "xrefs" : [ "PATOC:DD" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T02:35:02Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" } ] }, "type" : "CLASS", - "lbl" : "pyramidal" + "lbl" : "obsolete absolute visual threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000159", + "id" : "http://purl.obolibrary.org/obo/PATO_0000267", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute incidence" + "lbl" : "obsolete relative visual_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001489", + "id" : "http://purl.obolibrary.org/obo/PATO_0001598", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's extending out above or beyond a surface or boundary.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "protruding", + "xrefs" : [ ] }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001433" + "pred" : "hasExactSynonym", + "val" : "relational protruding quality", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001644" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "protruding" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002339", + "id" : "http://purl.obolibrary.org/obo/PATO_0001599", "meta" : { "definition" : { - "val" : "A quality of being covered with stiff or rough hairs.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An oriented quality inhering in a bearer by virtue of the bearer's being relocated around an axis.", + "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "rotation", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T02:51:37Z" } ] }, "type" : "CLASS", - "lbl" : "hispid" + "lbl" : "rotated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001008", + "id" : "http://purl.obolibrary.org/obo/PATO_0000269", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -43634,9 +44060,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute latency value" + "lbl" : "obsolete relative visual threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001009", + "id" : "http://purl.obolibrary.org/obo/PATO_0000260", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -43647,184 +44073,190 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative latency value" + "lbl" : "obsolete visual_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000150", + "id" : "http://purl.obolibrary.org/obo/PATO_0001592", "meta" : { "definition" : { - "val" : "A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A curvature which is relatively high.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001593" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "texture" + "lbl" : "increased curvature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001482", + "id" : "http://purl.obolibrary.org/obo/PATO_0001593", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line.", - "xrefs" : [ "Dictionary.com:Dictionary.com" ] + "val" : "A curvature which is relatively low.", + "xrefs" : [ "PATO:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001592" } ] }, "type" : "CLASS", - "lbl" : "prominent" + "lbl" : "decreased curvature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001483", + "id" : "http://purl.obolibrary.org/obo/PATO_0001590", "meta" : { "definition" : { - "val" : "Absence of an organ, tissue or cell due to failure to develop from a primordium or precursor cell.", - "xrefs" : [ "PATOC:GVG", "PATOC:PortlandMeetingFeb2015" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's coinciding spatially, partially or wholly with another entity.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "undeveloped", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "aplasia", + "val" : "overlap", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "With aplasia, the primordium or precursor develops, but does not proceed in its development to a mature structure" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "aplastic" + "lbl" : "overlap with" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002330", + "id" : "http://purl.obolibrary.org/obo/PATO_0000262", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being extended along a straight line, and is shaped like a reversed lance-point, with the tapering point attached to the leafstalk.", - "xrefs" : [ "PATOC:PG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T11:57:54Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "oblanceolate" + "lbl" : "obsolete visual placing" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000152", + "id" : "http://purl.obolibrary.org/obo/PATO_0001591", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's sensitivity towards a fixed location or value where a change is observed; upper limit.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "threshold" + "lbl" : "curvature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001480", + "id" : "http://purl.obolibrary.org/obo/PATO_0000261", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's resembling a sponge in elasticity, absorbency, or porousness.", - "xrefs" : [ "Answers.com:Answers.com" ] + "val" : "A quality of a single physical entity which is held by a bearer when the latter exhibits a state of growth, differentiation, or development.", + "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "spongy" + "lbl" : "maturity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000151", + "id" : "http://purl.obolibrary.org/obo/PATO_0001596", "meta" : { + "definition" : { + "val" : "A depth quality which is relatively high.", + "xrefs" : [ "PATO:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "deep", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001472" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001666" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { + } ] + }, + "type" : "CLASS", + "lbl" : "increased depth" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000264", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative texture" + "lbl" : "obsolete absolute visual_ability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001481", + "id" : "http://purl.obolibrary.org/obo/PATO_0000263", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sloped" + "lbl" : "obsolete visual threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002333", + "id" : "http://purl.obolibrary.org/obo/PATO_0001597", "meta" : { "definition" : { - "val" : "A adhesivity which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An oriented quality inhering in a bearer by virtue of the bearer's being turned outward in placement.", + "xrefs" : [ "thefreedictionary:thefreedictionary" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T12:32:43Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002334" } ] }, "type" : "CLASS", - "lbl" : "increased adhesivity" + "lbl" : "everted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001486", + "id" : "http://purl.obolibrary.org/obo/PATO_0001594", "meta" : { "definition" : { - "val" : "An age quality that exists by virtue of the time (years and months) that the bearer has existed.", - "xrefs" : [ "WordNet:Wordnet" ] + "val" : "A concave quality inhering in a bearer by virtue of the bearer's forming or resembling an arch.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "chronological age" + "lbl" : "arched" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001002", + "id" : "http://purl.obolibrary.org/obo/PATO_0000266", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -43835,9 +44267,18 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete alternation value" + "lbl" : "obsolete absolute visual_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000154", + "id" : "http://purl.obolibrary.org/obo/go#goslim_plant", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Plant GO slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000265", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -43848,60 +44289,52 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete pain threshold" + "lbl" : "obsolete relative visual_ability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001487", + "id" : "http://purl.obolibrary.org/obo/PATO_0001595", "meta" : { "definition" : { - "val" : "A time quality inhering in a bearer by virtue of the bearer's growing old; aging.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimenision.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "senescent" + "lbl" : "depth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001003", + "id" : "http://purl.obolibrary.org/obo/PATO_0000279", "meta" : { + "definition" : { + "val" : "A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative alternation value" + "lbl" : "male fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002334", + "id" : "http://purl.obolibrary.org/obo/PATO_0000278", "meta" : { - "definition" : { - "val" : "A adhesivity which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] - }, "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T12:42:22Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002333" } ] }, "type" : "CLASS", - "lbl" : "decreased adhesivity" + "lbl" : "obsolete hybrid fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000153", + "id" : "http://purl.obolibrary.org/obo/PATO_0000271", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -43912,39 +44345,50 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute threshold" + "lbl" : "obsolete prepulse inhibition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000156", + "id" : "http://purl.obolibrary.org/obo/PATO_0000270", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete defecation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001484", + "id" : "http://purl.obolibrary.org/obo/PATO_0000273", "meta" : { "definition" : { - "val" : "A quality of a process which occurs near to or not long before the present.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A reproductive quality inhering in an organism or population by virtue of the bearer's potential reproductive capacity ad measured by the number of gametes.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Fecundity" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "recent" + "lbl" : "fecundity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001000", + "id" : "http://purl.obolibrary.org/obo/PATO_0000272", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative neurobehavioral function" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000275", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -43955,105 +44399,59 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative alternation" + "lbl" : "obsolete gestational period" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002331", + "id" : "http://purl.obolibrary.org/obo/PATO_0000274", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer exhibiting molecular attraction to another entity in contact.", + "val" : "A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "resinous", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T12:28:16Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002332" } ] }, "type" : "CLASS", - "lbl" : "adhesive" + "lbl" : "fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001485", + "id" : "http://purl.obolibrary.org/obo/PATO_0000277", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together.", + "val" : "A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "compressed", - "xrefs" : [ ] - }, { - "pred" : "hasBroadSynonym", - "val" : "compact", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "dense", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "squashed", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001840" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002452" } ] }, "type" : "CLASS", - "lbl" : "condensed" + "lbl" : "female fertility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002332", + "id" : "http://purl.obolibrary.org/obo/PATO_0000276", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer not exhibiting molecular attraction to another entity in contact.", + "val" : "A reproductive quality inhering in the young of an animal by virtue of their number.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "non-resinous", + "val" : "litter size", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-01-31T12:28:57Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002331" } ] }, "type" : "CLASS", - "lbl" : "non-adhesive" + "lbl" : "brood size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000155", + "id" : "http://purl.obolibrary.org/obo/PATO_0000209", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -44064,163 +44462,150 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative threshold" + "lbl" : "obsolete digestive function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001001", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_131567", "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "biota", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "hasRelatedSynonym", + "val" : "biota", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute alternation" + "lbl" : "cellular organisms" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045022", + "id" : "http://purl.obolibrary.org/obo/PATO_0001534", "meta" : { "definition" : { - "val" : "A fluid flow which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A color pattern inhering in a bearer by virtue of bearer's having 3 or more hues or degrees of saturations.", + "xrefs" : [ "merriam-webster.:merriam-webster." ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal fluid flow" + "lbl" : "motley" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045023", + "id" : "http://purl.obolibrary.org/obo/PATO_0000202", "meta" : { - "definition" : { - "val" : "A fluorescence which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "normal fluorescence" + "lbl" : "obsolete long term memory" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045024", + "id" : "http://purl.obolibrary.org/obo/PATO_0001535", "meta" : { "definition" : { - "val" : "A force which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A color pattern inhering in a bearer by virtue of bearer's being marked with small spots, patches, or specks of hue or degree of saturation differing from that of the background.", + "xrefs" : [ "merriam-webster.:merriam-webster." ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "speckled", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "normal force" + "lbl" : "dappled" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045025", + "id" : "http://purl.obolibrary.org/obo/PATO_0000201", "meta" : { - "definition" : { - "val" : "A fragility which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "normal fragility" + "lbl" : "obsolete memory" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045020", + "id" : "http://purl.obolibrary.org/obo/PATO_0000204", "meta" : { - "definition" : { - "val" : "A fertility which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal fertility" + "lbl" : "obsolete absolute locomotor_activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045021", + "id" : "http://purl.obolibrary.org/obo/PATO_0001532", "meta" : { "definition" : { - "val" : "A flexibility which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A color pattern inhering in a bearer by virtue of the bearer's having one hue.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "homogeneously colored", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "evenly colored", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "homogenously pigmented", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "uniformly colored", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "normal flexibility" + "lbl" : "mono-colored" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001419", + "id" : "http://purl.obolibrary.org/obo/PATO_0001533", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge.", + "val" : "A color pattern inhering in a bearer by virtue of bearer's having two or more hues or degrees of saturation.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "variegated", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sharp" + "lbl" : "multi-colored" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000565", + "id" : "http://purl.obolibrary.org/obo/PATO_0000203", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -44231,124 +44616,78 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete volume value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001413", - "meta" : { - "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the rate of the bearer's angular movement about an axis; the angle rotated in a given time.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Angular_velocity" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "angular velocity" + "lbl" : "obsolete short term memory" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001897", + "id" : "http://purl.obolibrary.org/obo/PATO_0001538", "meta" : { "definition" : { - "val" : "A structure quality inhering in a bearer by virtue of the bearer's having a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A solubility quality inhering in a substance by virtue of the bearer's inability of a substance to dissolve in a liquid.", + "xrefs" : [ "edp:edp" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "insoluble", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "See GO term: GO:0031974 membrane-enclosed lumen [DEF:\"The enclosed volume within a sealed membrane or between two sealed membranes\"]." + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001537" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001896" } ] }, "type" : "CLASS", - "lbl" : "lumenized" + "lbl" : "insoluble in" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001414", + "id" : "http://purl.obolibrary.org/obo/PATO_0000206", "meta" : { - "definition" : { - "val" : "A physical quality inhering in a catalyst by virtue of the amount of the catalyst's action.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "catalytic activity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000564", - "meta" : { - "basicPropertyValues" : [ { + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete thickness value" + "lbl" : "obsolete enzyme function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001898", + "id" : "http://purl.obolibrary.org/obo/PATO_0000205", "meta" : { - "definition" : { - "val" : "A circumference which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001899" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased circumference" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001895", - "meta" : { - "definition" : { - "val" : "A biological sex quality inhering in an individual or a population that undergo sexual reproduction.", - "xrefs" : [ "wikipedia:wikipedia" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "mating type" + "lbl" : "obsolete relative locomotor_activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001411", + "id" : "http://purl.obolibrary.org/obo/PATO_0001539", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's having distinct structure.", + "val" : "A compositional quality inhering in an bearer by virtue of the bearer's quantities or relative ratios of amylose of the inhering entity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "amylose compositionality", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001412" } ] }, "type" : "CLASS", - "lbl" : "structured" + "lbl" : "amylose composition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000567", + "id" : "http://purl.obolibrary.org/obo/PATO_0000208", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -44359,213 +44698,193 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute height value" + "lbl" : "obsolete defensive function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001896", + "id" : "http://purl.obolibrary.org/obo/PATO_0001536", "meta" : { "definition" : { - "val" : "A structure quality inhering in a bearer by virtue of the bearer's lacking of a three dimensional space surrounded by one or more anatomical structures and containing one or more anatomical substances.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A molecular quality that inheres in a molecular entity by virtue of the bearer's disposition to dissolve in a liquid.", + "xrefs" : [ "edp:edp" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001897" } ] }, "type" : "CLASS", - "lbl" : "unlumenized" + "lbl" : "solubility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000566", + "id" : "http://purl.obolibrary.org/obo/PATO_0001537", "meta" : { + "definition" : { + "val" : "A solubility quality inhering in a substance by virtue of the bearer's disposition to dissolve in a liquid.", + "xrefs" : [ "edp:edp" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : ":breadth", + "pred" : "hasExactSynonym", + "val" : "soluble", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001538" } ] }, "type" : "CLASS", - "lbl" : "obsolete width value" + "lbl" : "soluble in" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001412", + "id" : "http://purl.obolibrary.org/obo/PATO_0000207", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001411" } ] }, "type" : "CLASS", - "lbl" : "unstructured" + "lbl" : "obsolete circulatory function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000569", + "id" : "http://purl.obolibrary.org/obo/PATO_0001530", "meta" : { "definition" : { - "val" : "A height which is relatively low.", + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's behavior.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "short", + "pred" : "hasExactSynonym", + "val" : "behavioral quality of occurrent", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000570" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased height" + "lbl" : "behavioral quality of a process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001417", + "id" : "http://purl.obolibrary.org/obo/PATO_0001531", "meta" : { "definition" : { - "val" : "A duration quality of a process inhering in a bearer by virtue of the bearer's duration which has irregular start and/or end times.", - "xrefs" : [ "PATOC:melissa" ] + "val" : "A cellular quality that exists by virtue of the disposition of the cell to adhere to other cells and molecules, through the emergent action of the molecular parts of the cell surface.", + "xrefs" : [ "PATOC:cjm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - 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"subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "stiff", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "stiffness", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001544" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "lethargic" + "lbl" : "inflexible" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001899", + "id" : "http://purl.obolibrary.org/obo/PATO_0000213", "meta" : { - "definition" : { - "val" : "A circumference which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - 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"definition" : { - "val" : "A duration which has regular start and/or end times.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001417" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "regular duration" + "lbl" : "obsolete neural function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001890", + "id" : "http://purl.obolibrary.org/obo/PATO_0001546", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being divided into three branches.", - "xrefs" : [ "InfoVisual:InfoVisual" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity characterized by particles arranged such that their shape and volume are relatively stable.", + "xrefs" : [ "Chemistry:http://chemistry.about.com/od/chemistryglossary/a/soliddefinition.htm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "trifurcate", + "val" : "solidity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -44574,146 +44893,136 @@ } ] }, "type" : "CLASS", - "lbl" : "tripartite" + "lbl" : "quality of a solid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001893", + "id" : "http://purl.obolibrary.org/obo/PATO_0001543", "meta" : { "definition" : { - "val" : "An odor quality of having increased odor.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking.", + "xrefs" : [ "merriam-webster:merriam-webster" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001892" } ] }, "type" : "CLASS", - "lbl" : "increased odor" + "lbl" : "flexibility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000561", + "id" : "http://purl.obolibrary.org/obo/PATO_0000215", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete length value" + "lbl" : "obsolete respiratory function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000560", + "id" : "http://purl.obolibrary.org/obo/PATO_0001544", "meta" : { + "definition" : { + "val" : "A physical quality inhering in a bearer by virtue of the bearer's ability of being turned, bowed, or twisted without breaking.", + "xrefs" : [ "merriam-webster:merriam-webster" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "bendy", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001545" } ] }, "type" : "CLASS", - "lbl" : "obsolete height value" + "lbl" : "flexible" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001410", + "id" : "http://purl.obolibrary.org/obo/PATO_0000214", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel.", - "xrefs" : [ "Biology-online:Biology-online" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "striated" + "lbl" : "obsolete reproductive function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001894", + "id" : "http://purl.obolibrary.org/obo/PATO_0000217", "meta" : { - "definition" : { - "val" : "An organismal quality inhering in a bearer by virtue of the bearer's physical expression of sexual characteristics.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "phenotypic sex" + "lbl" : "obsolete immune function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001891", + "id" : "http://purl.obolibrary.org/obo/PATO_0001549", "meta" : { "definition" : { - "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a continuous convex surface with an axis of symmetry and one axis longer than the other; egg-shaped.", - "xrefs" : [ "PATOC:mc" ] + "val" : "A sensitivity toward an external stimulus which is higher than normal/average.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "eccentric", - "xrefs" : [ ] - }, { "pred" : "hasExactSynonym", - "val" : "ovoid", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "oval", + "val" : "high sensitivity toward", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "egg-shaped", + "val" : "increased sensitivity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001550" } ] }, "type" : "CLASS", - "lbl" : "ovate" + "lbl" : "increased sensitivity toward" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000563", + "id" : "http://purl.obolibrary.org/obo/PATO_0000216", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative size value" + "lbl" : "obsolete heart rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001892", + "id" : "http://purl.obolibrary.org/obo/RO_0002481", "meta" : { - "definition" : { - "val" : "An odor quality of having decreased odor.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001893" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "decreased odor" + "type" : "PROPERTY", + "lbl" : "is kinase activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000562", + "id" : "http://purl.obolibrary.org/obo/PATO_0000219", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -44724,150 +45033,120 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete mass value" + "lbl" : "obsolete healing" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045008", + "id" : "http://purl.obolibrary.org/obo/PATO_0001547", "meta" : { "definition" : { - "val" : "A cellular motility which is normal or average.", - "xrefs" : [ ] + "val" : "A physical quality inhering in a bearer by virtue of the bearer's exhibiting the physical characteristics of an entity consisting of particles that have neither a defined volume nor defined shape.", + "xrefs" : [ "Chemistry:http://chemistry.about.com/od/chemistryglossary/a/gasdefinition.htm", "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "gaseous", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "normal cellular motility" + "lbl" : "quality of a gas" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045009", + "id" : "http://purl.obolibrary.org/obo/PATO_0001548", "meta" : { "definition" : { - "val" : "A coiling which is normal or average.", - "xrefs" : [ ] + "val" : "A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape.", + "xrefs" : [ "url:http://www.chemistry-dictionary.com/definition/liquid.php" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "liquidity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal coiling" + "lbl" : "quality of a liquid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045004", + "id" : "http://purl.obolibrary.org/obo/PATO_0000218", "meta" : { - "definition" : { - "val" : "An affinity which is relatively normal or average.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "normal affinity" + "lbl" : "obsolete repair function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045005", + "id" : "http://purl.obolibrary.org/obo/PATO_0001541", "meta" : { "definition" : { - "val" : "An age which is relatively normal or average.", - "xrefs" : [ ] + "val" : "An amylose composition quality inhering in an bearer by virtue of the bearer's having high amount of amylose content.", + "xrefs" : [ "TO:TO" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal age" + "lbl" : "non-glutinous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045006", + "id" : "http://purl.obolibrary.org/obo/PATO_0001542", "meta" : { "definition" : { - "val" : "An avidity which is relatively normal or average.", - "xrefs" : [ ] + "val" : "A phase which starts later than natural start point.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal avidity" + "lbl" : "delayed phase" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045007", + "id" : "http://purl.obolibrary.org/obo/RO_0002479", "meta" : { "definition" : { - "val" : "A behavioural quality of a process inhering in a bearer by virtue of the bearer's exhibiting normal or average activity.", + "val" : "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "normal behavioural activity" + "type" : "PROPERTY", + "lbl" : "has part that occurs in" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001424", + "id" : "http://purl.obolibrary.org/obo/PATO_0000211", "meta" : { - "definition" : { - "val" : "A color hue with very low wavelength of that portion of the visible spectrum lying between reddish blue or bluish purple, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 380 nanometers.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Violet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "violet" + "lbl" : "obsolete muscle function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000576", + "id" : "http://purl.obolibrary.org/obo/PATO_0000210", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -44878,13 +45157,13 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative mass value" + "lbl" : "obsolete excretory function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001425", + "id" : "http://purl.obolibrary.org/obo/PATO_0001540", "meta" : { "definition" : { - "val" : "A color hue consisting of red hue and yellow hue and high brightness.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An amylose composition quality inhering in an bearer by virtue of the bearer's having negligible or no amylose content.", + "xrefs" : [ "TO:TO" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -44893,67 +45172,93 @@ } ] }, "type" : "CLASS", - "lbl" : "rosy" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000575", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete absolute mass value" + "lbl" : "glutinous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001422", + "id" : "http://purl.obolibrary.org/obo/pato#directly_associated_with", "meta" : { "definition" : { - "val" : "A viability quality inhering in a bearer by virtue of the cessation of the bearer's life.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear.", + "xrefs" : [ "PATOC:cjm", "Wikipedia:Association_(statistics)" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Example: 'Lewy bodies increased number related to dystrophic neurite increased number' (from annotation of PMID:8740227 in http://ccdb.ucsd.edu/1.0/NDPO.owl#ndpo_404). Here the increase in the number of lewy bodies is directly_associated_with the increase in the number of dystrophic neurites.\nAssociation is weaker than correlation or proportionality. These relations may be later added to PATO." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2009-08-26T02:50:08Z" } ] }, - "type" : "CLASS", - "lbl" : "dead" + "type" : "PROPERTY", + "lbl" : "directly_associated_with" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000578", + "id" : "http://purl.obolibrary.org/obo/PATO_0001556", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001563" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "val" : "http://purl.obolibrary.org/obo/PATO_0001624" } ] }, "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001423", + "id" : "http://purl.obolibrary.org/obo/RO_0002473", "meta" : { "definition" : { - "val" : "A reflectivity quality inhering in the bearer by virtue of the bearer's ability to refract light.", - "xrefs" : [ "biology-online:biology-online" ] + "val" : "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "xrefs" : [ { + "val" : "RO:0002473" + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/22293552" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "composed_primarily_of" + } ] + }, + "type" : "PROPERTY", + "lbl" : "composed primarily of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000224", + "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "refractile" + "lbl" : "obsolete motor function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000577", + "id" : "http://purl.obolibrary.org/obo/PATO_0000223", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -44964,197 +45269,225 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete weight value" + "lbl" : "obsolete muscle strength" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001428", + "id" : "http://purl.obolibrary.org/obo/PATO_0001557", "meta" : { - "definition" : { - "val" : "A concentration quality inhering in a medium by virtue of the bearer's tendency to hydronate a specific reference base.", - "xrefs" : [ "chemicool:chemicool" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0002000" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "medium acidity" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001429", + "id" : "http://purl.obolibrary.org/obo/pato#abnormal_slim", "meta" : { - "definition" : { - "val" : "An medium acidity quality inhering in a solution by virtue of the bearer's a high concentration of H+ ions.", - "xrefs" : [ "chemicool:chemicool" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Abnormal/normal slim" } ] }, - "type" : "CLASS", - "lbl" : "acidic" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000579", + "id" : "http://purl.obolibrary.org/obo/PATO_0000226", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001562" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "obsolete tactile response" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001426", + "id" : "http://purl.obolibrary.org/obo/PATO_0001554", "meta" : { "definition" : { - "val" : "A color consisting of purple and brown hue.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Maroon" ] + "val" : "A sensitivity of a process to oxygen which is lower than normal or average.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low sensitivity of occurrent to oxygen", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001553" } ] }, "type" : "CLASS", - "lbl" : "maroon" + "lbl" : "decreased sensitivity of a process to oxygen" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001427", + "id" : "http://purl.obolibrary.org/obo/PATO_0000225", "meta" : { - "definition" : { - "val" : "A concentration quality inhering in compound by virtue of the bearer's tendency to act as a hydron donor.", - "xrefs" : [ "chemicool:chemicool" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "compound acidity" + "lbl" : "obsolete sensory function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000570", + "id" : "http://purl.obolibrary.org/obo/PATO_0001555", "meta" : { "definition" : { - "val" : "A height which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.", + "xrefs" : [ "PATOC:CJM" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "xrefs" : [ { + "val" : "OBO_REL:has_part" + } ], "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "mereological quality", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "number of", + "xrefs" : [ ] + }, { "pred" : "hasRelatedSynonym", - "val" : "tall", + "val" : "cardinality", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "number", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "has or lacks parts of type", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "extra or missing physical or functional parts", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000569" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased height" + "lbl" : "has number of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000572", + "id" : "http://purl.obolibrary.org/obo/PATO_0000228", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative length value" + "lbl" : "obsolete auditory" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002598", + "id" : "http://purl.obolibrary.org/obo/PATO_0000227", "meta" : { - "definition" : { - "val" : "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "renin -> arteriolar smooth muscle contraction" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "capable of positively regulating" + "type" : "CLASS", + "lbl" : "obsolete motor performance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001420", + "id" : "http://purl.obolibrary.org/obo/PATO_0001558", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's disposition to rise or float in a fluid medium such as water or air.", + "val" : "A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "buoyancy" + "lbl" : "lacking processual parts" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000571", + "id" : "http://purl.obolibrary.org/obo/PATO_0001559", "meta" : { + "definition" : { + "val" : "A functionality quality which is held by the bearer when the latter is able to perform additional or different function(s).", + "xrefs" : [ "PATO:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "having supernumerary functions", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { + } ] + }, + "type" : "CLASS", + "lbl" : "having extra function" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000229", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute length value" + "lbl" : "obsolete olfactory" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001421", + "id" : "http://purl.obolibrary.org/obo/PATO_0000220", "meta" : { - "definition" : { - "val" : "A viability quality inhering in a bearer by virtue of the bearer's condition before death.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "alive" + "lbl" : "obsolete regeneration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000574", + "id" : "http://purl.obolibrary.org/obo/PATO_0001552", "meta" : { "definition" : { - "val" : "A length quality which is relatively small.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A sensitivity of a process which is lower than normal or average.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "stubby", - "xrefs" : [ ] - }, { "pred" : "hasExactSynonym", - "val" : "short", + "val" : "decreased sensitivity of occurrent", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "shortened", + "pred" : "hasExactSynonym", + "val" : "low sensitivity of occurrent", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -45162,32 +45495,22 @@ "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000573" + "val" : "http://purl.obolibrary.org/obo/PATO_0001551" } ] }, "type" : "CLASS", - "lbl" : "decreased length" - }, { - "id" : "http://purl.obolibrary.org/obo/pato#is_magnitude_of", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "pato.ontology" - } ] - }, - "type" : "PROPERTY", - "lbl" : "is_magnitude_of" + "lbl" : "decreased sensitivity of a process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000573", + "id" : "http://purl.obolibrary.org/obo/PATO_0001553", "meta" : { "definition" : { - "val" : "A length quality which is relatively large.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A sensitivity of occurrent to oxygen which is higher than normal or average.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "long", + "val" : "high sensitivity of occurrent to oxygen", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -45195,305 +45518,224 @@ "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000574" + "val" : "http://purl.obolibrary.org/obo/PATO_0001554" } ] }, "type" : "CLASS", - "lbl" : "increased length" + "lbl" : "increased sensitivity of a process to oxygen" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0009987", + "id" : "http://purl.obolibrary.org/obo/PATO_0001550", "meta" : { "definition" : { - "val" : "Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.", - "xrefs" : [ "GOC:go_curators", "GOC:isa_complete" ] + "val" : "A sensitivity toward an external stimulus which is lower than normal/average.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "cellular physiological process", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "cell growth and/or maintenance", + "val" : "low sensitivity toward", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "cell physiology", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "single-organism cellular process", + "val" : "decreased sensitivity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0044763" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0050875" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "janelomax" + "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0008151" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2012-12-11T16:56:55Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001549" } ] }, "type" : "CLASS", - "lbl" : "cellular process" + "lbl" : "decreased sensitivity toward" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045000", + "id" : "http://purl.obolibrary.org/obo/PATO_0000222", "meta" : { - "definition" : { - "val" : "A rate which is relatively normal.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "normal rate" + "lbl" : "obsolete muscle elevation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045001", + "id" : "http://purl.obolibrary.org/obo/PATO_0000221", "meta" : { - "definition" : { - "val" : "A quality of an object that has a value that is normal or average.", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-21T14:11:01Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "normal object quality" + "lbl" : "obsolete urination" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045002", + "id" : "http://purl.obolibrary.org/obo/PATO_0001551", "meta" : { "definition" : { - "val" : "An acidity which is relatively normal.", - "xrefs" : [ ] + "val" : "A sensitivity of a process which is higher than normal or average.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high sensitivity of occurrent", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "increased sensitivity of occurrent", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001552" } ] }, "type" : "CLASS", - "lbl" : "normal acidity" + "lbl" : "increased sensitivity of a process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0045003", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_314295", "meta" : { - "definition" : { - "val" : "A adhesivity which is relatively normal or average.", + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "ape", "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2017-12-22T14:16:43Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "Luke Slater" + "pred" : "hasExactSynonym", + "val" : "apes", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "normal adhesivity" + "lbl" : "Hominoidea" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000587", + "id" : "http://purl.obolibrary.org/obo/GO_0005488", "meta" : { "definition" : { - "val" : "A size quality which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.", + "xrefs" : [ "GOC:ceb", "GOC:mah", "ISBN:0198506732" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#gocheck_do_not_annotate" ], + "xrefs" : [ { + "val" : "Wikipedia:Binding_(molecular)" + } ], "synonyms" : [ { "pred" : "hasNarrowSynonym", - "val" : "underdeveloped", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "tiny", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "small", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "reduced", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "hypoplasia", + "val" : "ligand", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children." }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000586" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "molecular_function" } ] }, "type" : "CLASS", - "lbl" : "decreased size" + "lbl" : "binding" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001435", + "id" : "http://purl.obolibrary.org/obo/PATO_0001567", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's not being spread out or scattered about or divided up.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001566" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "attachment quality" + "lbl" : "undistributed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000103", + "id" : "http://purl.obolibrary.org/obo/PATO_0000235", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete micronutrient sensitivity" + "lbl" : "obsolete odor_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002595", + "id" : "http://purl.obolibrary.org/obo/PATO_0001568", "meta" : { - "definition" : { - "val" : "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.", - "xrefs" : [ ] - }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001624" } ] }, - "type" : "PROPERTY", - "lbl" : "causal relation between material entity and a process" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001436", + "id" : "http://purl.obolibrary.org/obo/PATO_0000234", "meta" : { - "definition" : { - "val" : "An attachment quality inhering in a flower by virtue of the bearer's lacking a stalk, as in flowers or leaves that grow directly from the stem.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sessility_(botany)" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sessile (sensu botany)" + "lbl" : "obsolete visual" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000586", + "id" : "http://purl.obolibrary.org/obo/RO_0002464", "meta" : { - "definition" : { - "val" : "A size quality which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "great", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "enlarged", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "expanded", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "large", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "big", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001202" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000587" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, - "type" : "CLASS", - "lbl" : "increased size" + "type" : "PROPERTY", + "lbl" : "helper property (not for use in curation)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000102", + "id" : "http://purl.obolibrary.org/obo/PATO_0001565", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete macronutrient sensitivity" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002596", - "meta" : { - "definition" : { - "val" : "Holds between c and p if and only if c is capable of some activity a, and a regulates p.", - "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "pyrethroid -> growth" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "PROPERTY", - "lbl" : "capable of regulating" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000589", + "id" : "http://purl.obolibrary.org/obo/PATO_0000237", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -45504,81 +45746,65 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute thickness value" + "lbl" : "obsolete absolute odor_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001433", + "id" : "http://purl.obolibrary.org/obo/PATO_0001566", "meta" : { "definition" : { - "val" : "A quality of a single process which describes the growth of an organism, structure, or group of organisms.", - "xrefs" : [ "PATOC:MAH" ] + "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "growth timing quality", + "pred" : "hasExactSynonym", + "val" : "diffuse", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "growth quality of a process", + "pred" : "hasExactSynonym", + "val" : "scattered", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001489" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "growth quality of occurrent" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000105", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001513" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001567" } ] }, "type" : "CLASS", - "lbl" : "obsolete p h sensitivity" + "lbl" : "distributed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001434", + "id" : "http://purl.obolibrary.org/obo/PATO_0000236", "meta" : { - "definition" : { - "val" : "An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring.", - "xrefs" : [ "WordNet:WordNet" ] - }, "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "reproductive quality" + "lbl" : "obsolete odor type" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000588", + "id" : "http://purl.obolibrary.org/obo/PATO_0000239", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being a remnant structure from earlier development or evolution.", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "May be part of an animal (such as an organ or bone) that is no longer used by the species and has therefore become smaller or less developed." + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "vestigial" + "lbl" : "obsolete blinking reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000104", + "id" : "http://purl.obolibrary.org/obo/PATO_0000238", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -45589,90 +45815,80 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete osmotic response sensitivity" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002597", - "meta" : { - "definition" : { - "val" : "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.", - "xrefs" : [ ] - }, - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - } ] - }, - "type" : "PROPERTY", - "lbl" : "capable of negatively regulating" + "lbl" : "obsolete relative odor_acuity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000107", + "id" : "http://purl.obolibrary.org/obo/PATO_0001569", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0002001" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "obsolete alkali sensitivity" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001439", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_314293", "meta" : { - "definition" : { - "val" : "A contractile quality inhering in a bearer by virtue of the bearer's elastic tension that facilitate response to stimuli.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "tone", + "pred" : "hasRelatedSynonym", + "val" : "Anthropoidea", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "TODO: we need a clearer differentium between this and contractility - or merge?" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001498" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "tonicity" + "lbl" : "Simiiformes" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000106", + "id" : "http://purl.obolibrary.org/obo/PATO_0001560", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0002002" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, - "type" : "CLASS", - "lbl" : "obsolete acid sensitivity" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001437", + "id" : "http://purl.obolibrary.org/obo/PATO_0001563", "meta" : { "definition" : { - "val" : "A attachment quality inhering in a bearer by virtue of the bearer's inability to move about.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sessile_(zoology)" ] + "val" : "A mass which is higher than normal or average.", + "xrefs" : [ "PATO:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "high mass", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "large mass", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001562" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000578" } ] }, "type" : "CLASS", - "lbl" : "sessile (sensu zoology)" + "lbl" : "increased mass" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000109", + "id" : "http://purl.obolibrary.org/obo/PATO_0000231", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -45683,24 +45899,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete water sensitivity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001438", - "meta" : { - "definition" : { - "val" : "A attachment quality inhering in a bearer by virtue of the bearer's having or being supported by a pedicel or pedicle.", - "xrefs" : [ "MedTerms:MedTerms" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "pedicellate" + "lbl" : "obsolete reflex" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000108", + "id" : "http://purl.obolibrary.org/obo/PATO_0000230", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -45711,22 +45912,24 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete salt sensitivity" + "lbl" : "obsolete proprioreception" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000581", + "id" : "http://purl.obolibrary.org/obo/PATO_0001564", "meta" : { + "definition" : { + "val" : "A quality of a process inhering in a bearer by virtue of the bearer's processual parts.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative weight value" + "lbl" : "extra or missing processual parts" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000580", + "id" : "http://purl.obolibrary.org/obo/PATO_0000233", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -45737,1029 +45940,1073 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute weight value" + "lbl" : "obsolete touch" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001431", + "id" : "http://purl.obolibrary.org/obo/pato#is_measurement_of", "meta" : { - "definition" : { - "val" : "An emergent molecular quality that arises by virtue of the bearer's disposition to exhibit molecular attraction to another entity in contact.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "adhesiveness", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "stickiness", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "The definition is general enough to cover adhesion arising from different kinds of chemical bonding/forces, although for PATO this term will most commonly used for cellular adhesion. See also GO:0031589 \"cell-substrate adhesion\"." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "pato.ontology" } ] }, - "type" : "CLASS", - "lbl" : "adhesivity" + "type" : "PROPERTY", + "lbl" : "is_measurement_of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000583", + "id" : "http://purl.obolibrary.org/obo/PATO_0001561", "meta" : { "definition" : { - "val" : "A weight which is relatively low.", + "val" : "A quality of a process inhering in a bearer by virtue of the bearer's having additional processual parts.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low weight", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "light weight", + "val" : "having supernumerary processual parts", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000582" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased weight" + "lbl" : "having extra processual parts" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000582", + "id" : "http://purl.obolibrary.org/obo/PATO_0001562", "meta" : { "definition" : { - "val" : "A weight which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A mass which is lower than normal or average.", + "xrefs" : [ "PATO:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "high weight", + "val" : "low mass", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "heavy", + "val" : "small mass", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000579" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000583" + "val" : "http://purl.obolibrary.org/obo/PATO_0001563" } ] }, "type" : "CLASS", - "lbl" : "increased weight" + "lbl" : "decreased mass" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001432", + "id" : "http://purl.obolibrary.org/obo/PATO_0000232", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's decomposition into component parts.", - "xrefs" : [ "Medical-dictionary:Medical-dictionary" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decayed" + "lbl" : "obsolete taste" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000585", + "id" : "http://purl.obolibrary.org/obo/CARO_0001010", "meta" : { "definition" : { - "val" : "A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ).", - "xrefs" : [ "PATOC:MAH" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "shrunken", + "val" : "Material anatomical entity that is a member of an individual species or is a viral or viroid particle.", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000412" + "pred" : "http://purl.obolibrary.org/obo/IAO_creation_date", + "val" : "9/18/11" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000584" + "pred" : "http://purl.obolibrary.org/obo/IAO_created_by", + "val" : "Melissa Haendel" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "organism or virus" } ] }, "type" : "CLASS", - "lbl" : "hypotrophic" + "lbl" : "organism or virus or viroid" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000101", + "id" : "http://purl.obolibrary.org/obo/RO_0002450", "meta" : { + "definition" : { + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly increases activity of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "activates" } ] }, - "type" : "CLASS", - "lbl" : "obsolete soil nutrient sensitivity" + "type" : "PROPERTY", + "lbl" : "activity directly positively regulates activity of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000584", + "id" : "http://purl.obolibrary.org/obo/RO_0002448", "meta" : { "definition" : { - "val" : "An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ).", - "xrefs" : [ "PATOC:MAH" ] + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "hypertrophy", + "pred" : "hasExactSynonym", + "val" : "molecularly controls", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000585" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "hypertrophic" + "type" : "PROPERTY", + "lbl" : "activity directly regulates activity of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000100", + "id" : "http://purl.obolibrary.org/obo/RO_0002449", "meta" : { + "definition" : { + "val" : "Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "molecularly decreases activity of", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "inhibits" } ] }, - "type" : "CLASS", - "lbl" : "obsolete soil composition sensitivity" + "type" : "PROPERTY", + "lbl" : "molecularly decreases activity of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001430", + "id" : "http://purl.obolibrary.org/obo/RO_0002447", "meta" : { - "definition" : { - "val" : "An medium acidity quality inhering in a solution by virtue of the bearer's a low concentration of H+ ions.", - "xrefs" : [ "chemicool:chemicool" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Axiomatization to GO to be added later" } ] }, - "type" : "CLASS", - "lbl" : "alkaline" + "type" : "PROPERTY", + "lbl" : "phosphorylates" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0030545", + "id" : "http://purl.obolibrary.org/obo/IAO_0000116", "meta" : { "definition" : { - "val" : "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed.", - "xrefs" : [ "GOC:ceb" ] + "val" : "An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.", + "xrefs" : [ ] }, "xrefs" : [ { - "val" : "MIPS_funcat:18.02.07" + "val" : "IAO:0000116" } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "editor_note" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "editor note" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "molecular_function" + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "receptor regulator activity" + "type" : "PROPERTY", + "lbl" : "editor note" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0030546", + "id" : "http://purl.obolibrary.org/obo/IAO_0000117", "meta" : { "definition" : { - "val" : "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased.", - "xrefs" : [ "GOC:ceb" ] - }, - "synonyms" : [ { - "pred" : "hasBroadSynonym", - "val" : "receptor activator activity", + "val" : "Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "molecular_function" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "term editor" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" } ] }, - "type" : "CLASS", - "lbl" : "signaling receptor activator activity" + "type" : "PROPERTY", + "lbl" : "term editor" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000114", + "id" : "http://purl.obolibrary.org/obo/IAO_0000114", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Melanie Courtot" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Bill Bug" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has curation status" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "OBI_0000281" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" } ] }, - "type" : "CLASS", - "lbl" : "obsolete temperature sensitivity" + "type" : "PROPERTY", + "lbl" : "has curation status" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001446", + "id" : "http://purl.obolibrary.org/obo/IAO_0000115", "meta" : { "definition" : { - "val" : "A wholeness quality inhering in a bearer by virtue of the bearer's including all its components.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "definition" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "2012-04-05: \nBarry Smith\n\nThe official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.\n\nCan you fix to something like:\n\nA statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.\n\nAlan Ruttenberg\n\nYour proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. \n\nOn the specifics of the proposed definition:\n\nWe don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. \n\nPersonally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. \n\nWe also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. " + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" } ] }, - "type" : "CLASS", - "lbl" : "whole" + "type" : "PROPERTY", + "lbl" : "definition" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000598", + "id" : "http://purl.obolibrary.org/obo/IAO_0000112", "meta" : { + "definition" : { + "val" : "A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "IAO:0000112" + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "example_of_usage" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "example" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative width value" + "type" : "PROPERTY", + "lbl" : "example of usage" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001447", + "id" : "http://purl.obolibrary.org/obo/IAO_0000111", "meta" : { "definition" : { - "val" : "A composition quality inhering in an bearer by virtue of the bearer's being encrusted or impregnated with calcium carbonate (CHEBI:3311).", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "calcification", + "val" : "The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)", "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "calcareous", - "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "editor preferred term" } ] }, - "type" : "CLASS", - "lbl" : "calcified" + "type" : "PROPERTY", + "lbl" : "editor preferred term" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000113", + "id" : "http://purl.obolibrary.org/obo/PATO_0001509", "meta" : { + "definition" : { + "val" : "A quality of a single physical entity that arises by virtue of whether the bearer exhibits the ability to perform a regular function(s).", + "xrefs" : [ "PATOC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete radiation sensitivity" + "lbl" : "functionality" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002584", + "id" : "http://purl.obolibrary.org/obo/PATO_0001507", "meta" : { "definition" : { - "val" : "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p", - "xrefs" : [ ] + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's being interrupted of its normal course.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", - "val" : "Chris Mungall" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "has part structure that is capable of" + "type" : "CLASS", + "lbl" : "disrupted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000597", + "id" : "http://purl.obolibrary.org/obo/PATO_0001508", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000297" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute width value" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001444", + "id" : "http://purl.obolibrary.org/obo/IAO_0000118", "meta" : { "definition" : { - "val" : "A broken quality inhering in a bearer by virtue of the bearer's being broken open.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "hemorrhaged", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "ruptured", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "cracked", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "fractured", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "burst", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "fragmented", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "torn", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "split", + "val" : "An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001820" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "alternative term" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001443" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" } ] }, - "type" : "CLASS", - "lbl" : "broken" + "type" : "PROPERTY", + "lbl" : "alternative term" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000116", + "id" : "http://purl.obolibrary.org/obo/IAO_0000119", "meta" : { + "definition" : { + "val" : "formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Daniel Schober" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "definition source" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative temperature sensitivity" + "type" : "PROPERTY", + "lbl" : "definition source" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000599", + "id" : "http://purl.obolibrary.org/obo/PATO_0001501", "meta" : { "definition" : { - "val" : "A width which is relatively small.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's lacking complete growth, differentiation, or development.", + "xrefs" : [ "Merriam-Webster:Merriam-Webster" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "narrow", + "val" : "underdeveloped", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000600" + "val" : "http://purl.obolibrary.org/obo/PATO_0001701" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased width" + "lbl" : "immature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001445", + "id" : "http://purl.obolibrary.org/obo/PATO_0001502", "meta" : { "definition" : { - "val" : "A wholeness quality inhering in a bearer by virtue of the bearer's being taken apart into its constituent parts.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A monadic quality of continuant inhering in a bearer by virtue of the bearer's being intricate and compounded.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "disassembled" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000115", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: obsolete this." } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute temperature sensitivity" + "lbl" : "complexity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000118", + "id" : "http://purl.obolibrary.org/obo/PATO_0001500", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's being gradually narrower or thinner toward one end.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "taper", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute size" + "lbl" : "tapered" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000117", + "id" : "http://purl.obolibrary.org/obo/PATO_0001505", "meta" : { "definition" : { - "val" : "A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.", + "val" : "A structural quality inhering in a bearer by virtue of the bearer's not being in contact with another entity, or of no longer being connected or joined with another entity.", "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "discontiguous", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "divided_from", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "splitted from", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "size" - }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002581", - "meta" : { - "definition" : { - "val" : "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. 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A corollary of this is that P SubPropertyOf R.", + "val" : "Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.", "xrefs" : [ ] } }, - "type" : "PROPERTY", - "lbl" : "is a defining property chain axiom where second argument is reflexive" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000590", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete relative thickness value" + "type" : "INDIVIDUAL", + "lbl" : "metadata complete" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000592", + "id" : "http://purl.obolibrary.org/obo/RO_0002434", "meta" : { "definition" : { - "val" : "A thickness which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A relationship that holds between two entities in which the processes executed by the two entities are causally connected.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "thin", - "xrefs" : [ ] - }, { "pred" : "hasExactSynonym", - "val" : "low thickness", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "slender", + "val" : "in pairwise interaction with", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000591" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0914" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Considering relabeling as 'pairwise interacts with'" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." + }, { + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." } ] }, - "type" : "CLASS", - "lbl" : "decreased thickness" + "type" : "PROPERTY", + "lbl" : "interacts with" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000591", + "id" : "http://purl.obolibrary.org/obo/RO_0002436", "meta" : { "definition" : { - "val" : "A thickness which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "thick", + "val" : "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.", "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "molecularly binds with" }, { - "pred" : "hasExactSynonym", - "val" : "stout", - "xrefs" : [ ] + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/MI_0915" }, { - "pred" : "hasExactSynonym", - "val" : "high thickness", - "xrefs" : [ ] + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "binds" }, { - "pred" : "hasExactSynonym", - "val" : "thickened", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/ECO_0000353" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000592" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "increased thickness" + "type" : "PROPERTY", + "lbl" : "molecularly interacts with" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000594", + "id" : "http://purl.obolibrary.org/obo/IAO_0000125", "meta" : { + "definition" : { + "val" : "All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative volume value" + "type" : "INDIVIDUAL", + "lbl" : "pending final vetting" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001442", + "id" : "http://purl.obolibrary.org/obo/IAO_0000123", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of whether the bearer includes all its components.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "metadata incomplete" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000124", + "meta" : { + "definition" : { + "val" : "Nothing done yet beyond assigning a unique class ID and proposing a preferred term.", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "uncurated" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000121", + "meta" : { + "definition" : { + "val" : "term created to ease viewing/sort terms for development purpose, and will not be included in a release", + "xrefs" : [ ] + } + }, + "type" : "INDIVIDUAL", + "lbl" : "organizational term" + }, { + "id" : "http://purl.obolibrary.org/obo/IAO_0000122", + "meta" : { + "definition" : { + "val" : "Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking \"ready_for_release\" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed \"ready_for_release\" will also derived from a chain of ancestor classes that are also \"ready_for_release.\"", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" } ] }, - "type" : "CLASS", - "lbl" : "wholeness" + "type" : "INDIVIDUAL", + "lbl" : "ready for release" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000110", + "id" : "http://purl.obolibrary.org/obo/PATO_0001518", "meta" : { + "definition" : { + "val" : "An optical quality inhering in a bearer by virtue of the bearer's lacking focus.", + "xrefs" : [ "PATOC:NC" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete drought sensitivity" + "lbl" : "blurry" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000593", + "id" : "http://purl.obolibrary.org/obo/PATO_0001519", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of vibration, as perceived by the sense of hearing.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sound_quality" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute volume value" + "lbl" : "sound quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001443", + "id" : "http://purl.obolibrary.org/obo/uberon/core#upper_level", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001444" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "abstract upper-level terms not directly useful for analysis" } ] }, - "type" : "CLASS" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000596", + "id" : "http://purl.obolibrary.org/obo/PATO_0001512", "meta" : { "definition" : { - "val" : "A volume which is relatively low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A pattern inhering in a surface by virtue of the bearer's being marked by the presence of dots, punctures, points or pits.", + "xrefs" : [ "medical-dictionary:medical-dictionary" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "small volume", + "val" : "stippled", "xrefs" : [ ] }, { - "pred" : "hasExactSynonym", - "val" : "low volume", + "pred" : "hasRelatedSynonym", + "val" : "spotted", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "dotted", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000595" } ] }, "type" : "CLASS", - "lbl" : "decreased volume" + "lbl" : "punctate" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002578", + "id" : "http://purl.obolibrary.org/obo/RO_0002430", "meta" : { "definition" : { - "val" : "Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.", + "val" : "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "directly regulates (processual)" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002575", - "val" : "http://purl.obolibrary.org/obo/RO_0002211" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0004050", + "val" : "http://purl.obolibrary.org/obo/RO_0002428" } ] }, "type" : "PROPERTY", - "lbl" : "directly regulates" + "lbl" : "involved in negative regulation of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000112", + "id" : "http://purl.obolibrary.org/obo/PATO_0001513", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001566" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "obsolete humidity sensitivity" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001440", + "id" : "http://purl.obolibrary.org/obo/PATO_0001510", "meta" : { "definition" : { - "val" : "A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an identical molecule in an adjacent cell.", - "xrefs" : [ "GO:GO" ] + "val" : "A functionality quality held by the bearer when the latter is able to perform a regular function(s).", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001511" } ] }, "type" : "CLASS", - "lbl" : "homophilic" + "lbl" : "functional" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000595", + "id" : "http://purl.obolibrary.org/obo/RO_0002431", "meta" : { "definition" : { - "val" : "A volume which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "involved in or reguates" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "OWL does not allow defining object properties via a Union" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in or involved in regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001511", + "meta" : { + "definition" : { + "val" : "A disfunctional quality held by the bearer when the latter is unable to perform a regular function(s).", + "xrefs" : [ "PATC:MAH" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "defective", + "xrefs" : [ ] + }, { "pred" : "hasExactSynonym", - 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Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.", + "xrefs" : [ "GOC:cjm", "GOC:dos" ] + }, + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "enables activity in", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "executes activity in" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A protein that enables activity in a cytosol." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "obsolete flooding sensitivity" + "type" : "PROPERTY", + "lbl" : "is active in" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001441", + "id" : "http://purl.obolibrary.org/obo/PATO_0001516", "meta" : { "definition" : { - "val" : "A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an nonidentical molecule in an adjacent cell.", - "xrefs" : [ "GO:GO" ] + "val" : "An optical quality where light rays originating from a point on the object converge.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Focus_(optics)" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "heterophilic" + "lbl" : "focus" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0009966", + "id" : "http://purl.obolibrary.org/obo/PATO_0001517", "meta" : { "definition" : { - "val" : "Any process that modulates the frequency, rate or extent of signal transduction.", - "xrefs" : [ "GOC:sm" ] + "val" : "An optical quality inhering in a bearer by virtue of the bearer's having focus.", + "xrefs" : [ "PATOC:GVG" ] }, - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "regulation of signaling pathway", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "regulation of signalling pathway", - "xrefs" : [ "GOC:mah" ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0035466" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "regulation of signal transduction" + "lbl" : "focused" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0009967", + "id" : "http://purl.obolibrary.org/obo/PATO_0001514", "meta" : { "definition" : { - "val" : "Any process that activates or increases the frequency, rate or extent of signal transduction.", - "xrefs" : [ "GOC:sm" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer.", + "xrefs" : [ "PATOC:cjm" ] }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "up regulation of signal transduction", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "positive regulation of signalling pathway", - "xrefs" : [ "GOC:mah" ] - }, { - "pred" : "hasExactSynonym", - "val" : "upregulation of signal transduction", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "activation of signal transduction", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "stimulation of signal transduction", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "up-regulation of signal transduction", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "positive regulation of signaling pathway", - 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"val" : "negative regulation of signalling pathway", - "xrefs" : [ "GOC:mah" ] - }, { - "pred" : "hasExactSynonym", - "val" : "down-regulation of signal transduction", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "inhibition of signal transduction", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "negative regulation of signaling pathway", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "down regulation of signal transduction", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "downregulation of signal transduction", + "val" : "murky", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0035467" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "negative regulation of signal transduction" + "lbl" : "variable color" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000529", + "id" : "http://purl.obolibrary.org/obo/RO_0002427", "meta" : { + "definition" : { + "val" : "inverse of causally upstream of or within", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, - "type" : "CLASS", - "lbl" : "obsolete drug sensitive" + "type" : "PROPERTY", + "lbl" : "causally downstream of or within" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000528", + "id" : "http://purl.obolibrary.org/obo/RO_0002428", "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some 'p' and p' regulates some p", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "involved in regulation of" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002429", + "meta" : { + "definition" : { + "val" : "c involved in regulation of p if c is involved in some p' and p' positively regulates some p", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/RO_0004049", + "val" : "http://purl.obolibrary.org/obo/RO_0002428" } ] }, - "type" : "CLASS", - "lbl" : "obsolete drug insensitive" + "type" : "PROPERTY", + "lbl" : "involved in positive regulation of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001859", + "id" : "http://purl.obolibrary.org/obo/PATO_0001529", "meta" : { "definition" : { - "val" : "A coordination which is relatively high.", + "val" : "A spatiotemporal quality inhering in a cell.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high coordination", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001860" } ] }, "type" : "CLASS", - "lbl" : "increased coordination" + "lbl" : "cellular spatiotemporal quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000521", + "id" : "http://purl.obolibrary.org/obo/pato#has_cross_section", "meta" : { + "definition" : { + "val" : "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2.", + "xrefs" : [ "PATOC:CJM" ] + }, "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "obsolete drug sensitivity value" + "type" : "PROPERTY", + "lbl" : "has_cross_section" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001853", + "id" : "http://purl.obolibrary.org/obo/PATO_0001523", "meta" : { "definition" : { - "val" : "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of cerebral spinal fluid.", - "xrefs" : [ "PATOC:mh" ] + "val" : "A physical quality which is equal to the quotient of the speed of a sound wave divided by its wavelength.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sound_wavelength" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "hydrocephalic" + "lbl" : "sound wavelength" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001854", + "id" : "http://purl.obolibrary.org/obo/PATO_0001524", "meta" : { "definition" : { - "val" : "A spatial pattern inhering in a bearer by virtue of the bearer's being situated at right angles to the horizon.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A sound frequency in the range of 0-20 Hz.", + "xrefs" : [ "studyphysics:studyphysics" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -46768,44 +47015,18 @@ } ] }, "type" : "CLASS", - "lbl" : "vertical" + "lbl" : "intrasonic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000520", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete radiation sensitivity value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000523", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete insecticide sensitivity value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001851", + "id" : "http://purl.obolibrary.org/obo/PATO_0001521", "meta" : { "definition" : { - "val" : "A structure quality inhering in a bearer by virtue of the bearer's exhibiting transient abnormal enlargement, not due to cell proliferation.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A physical quality inhering in a sound wave by virtue of the maximum magnitude (value without regard to sign) of its disturbance.", + "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "swelling", + "pred" : "hasBroadSynonym", + "val" : "loudness", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -46814,97 +47035,42 @@ } ] }, "type" : "CLASS", - "lbl" : "swollen" + "lbl" : "sound amplitude" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001852", + "id" : "http://purl.obolibrary.org/obo/PATO_0001522", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being out of its usual or proper place, or position.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A physical quality inhering in sound by virtue of the bearer's travelling speed in a given medium under specified conditions.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sound_speed" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "dislocation", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "luxation", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "luxated", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "relational dislocated quality", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0002159" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0002158" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001479" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "dislocated" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000522", - "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete herbicide sensitivity value" + "lbl" : "sound speed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001857", + "id" : "http://purl.obolibrary.org/obo/PATO_0001527", "meta" : { "definition" : { - "val" : "A shape quality in a bearer by virtue of the bearer's curving inward.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A sound amplitude which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001355" - } ] - }, - "type" : "CLASS", - "lbl" : "concave" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000525", - "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete soil composition sensitivity value" + "lbl" : "quiet" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001858", + "id" : "http://purl.obolibrary.org/obo/PATO_0001528", "meta" : { "definition" : { - "val" : "A functionality quality inhering in a bearer by virtue of being not completely paralysed.", + "val" : "A sound amplitude which is relatively high.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], @@ -46914,26 +47080,28 @@ } ] }, "type" : "CLASS", - "lbl" : "partially paralysed" + "lbl" : "loud" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000524", + "id" : "http://purl.obolibrary.org/obo/PATO_0001525", "meta" : { + "definition" : { + "val" : "A sound frequency in the range of 20 to 20.000 Hz.", + "xrefs" : [ "url:http://www.studyphysics.ca/" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete plant growth hormone sensitivity value" + "lbl" : "sonic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001855", + "id" : "http://purl.obolibrary.org/obo/PATO_0001526", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being in the plane of the horizon.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A sound frequency in the range of 20 000 + Hz.", + "xrefs" : [ "studyphysics:studyphysics" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -46942,1238 +47110,1653 @@ } ] }, "type" : "CLASS", - "lbl" : "horizontal" + "lbl" : "ultrasonic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000527", + "id" : "http://purl.obolibrary.org/obo/RO_0002418", "meta" : { + "definition" : { + "val" : "p 'causally upstream or within' q iff (1) the end of p is before the end of q and (2) the execution of p exerts some causal influence over the outputs of q; i.e. if p was abolished or the outputs of p were to be modified, this would necessarily affect q.", + "xrefs" : [ ] + }, + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "affects", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "influences (processual)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative drug sensitivity value" + "type" : "PROPERTY", + "lbl" : "causally upstream of or within" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001856", + "id" : "http://purl.obolibrary.org/obo/RO_0002411", "meta" : { "definition" : { - "val" : "An oriented quality inhering in a bearer by virtue of the bearer's being turned inward upon itself.", - "xrefs" : [ "die.net:die.net" ] + "val" : "p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "For example, a tubular organ or part." + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, - "type" : "CLASS", - "lbl" : "introverted" + "type" : "PROPERTY", + "lbl" : "causally upstream of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000526", + "id" : "http://purl.obolibrary.org/obo/RO_0002412", "meta" : { + "definition" : { + "val" : "p is immediately causally upstream of q iff both (a) p immediately precedes q and (b) p is causally upstream of q. In addition, the output of p must be an input of q.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/RO_0002411" } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute drug sensitivity value" + "type" : "PROPERTY", + "lbl" : "immediately causally upstream of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001850", + "id" : "http://purl.obolibrary.org/obo/PATO_0001520", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being fibrous tissue that replaces normal tissue destroyed by injury or disease.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "The frequency of transmitted vibrations.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "scarred" + "lbl" : "sound frequency" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002566", + "id" : "http://purl.obolibrary.org/obo/RO_0002410", "meta" : { "definition" : { - "val" : "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b", + "val" : "This relation groups causal relations between material entities and causal relations between processes", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", - "val" : "causally influences (material entity to material entity)" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", "val" : "Chris Mungall" - } ] - }, - "type" : "PROPERTY", - "lbl" : "causally influences" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000539", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" } ] }, - "type" : "CLASS", - "lbl" : "obsolete drought sensitivity value" + "type" : "PROPERTY", + "lbl" : "causally related to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001864", + "id" : "http://purl.obolibrary.org/obo/RO_0002404", "meta" : { + "definition" : { + "val" : "inverse of upstream of", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001865" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS" + "type" : "PROPERTY", + "lbl" : "causally downstream of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000532", + "id" : "http://purl.obolibrary.org/obo/RO_0002405", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000428" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "obsolete micronutrient sensitivity value" + "type" : "PROPERTY", + "lbl" : "immediately causally downstream of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001865", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_7742", "meta" : { - "definition" : { - "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. 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These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process.", + "xrefs" : [ "GOC:pdt" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_chembl" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "low coordination", + "val" : "molecular function", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "molecular process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0005554" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "molecular_function" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001859" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. 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See the specification of these instances for more detailed definitions of each enumerated value.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000546" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "GROUP:OBI:" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "curation status specification" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Bill Bug" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "OBI_0000266" } ] }, "type" : "CLASS", - "lbl" : "photosensitive" + "lbl" : "curation status specification" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001879", + "id" : "http://purl.obolibrary.org/obo/pato#cell_quality", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "cell_quality" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_7776", "meta" : { - "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter U.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "horseshoe", + "pred" : "hasExactSynonym", + "val" : "jawed vertebrates", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "horseshoe shaped", + "val" : "Gnathostomata", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "U-shaped" + "lbl" : "Gnathostomata " }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000546", + "id" : "http://www.geneontology.org/formats/oboInOwl#consider", + "type" : "PROPERTY", + "lbl" : "consider" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0005022", "meta" : { "definition" : { - "val" : "A photosensitivity quality inhering in a bearer by virtue of the bearer's lacking photosensitivity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A diameter that remains constant throughout the extent of an entity.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "photoresistant", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-10-17T14:15:59Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000547" } ] }, "type" : "CLASS", - "lbl" : "photoinsensitive" + "lbl" : "uniform diameter" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001877", + "id" : "http://purl.obolibrary.org/obo/PATO_0005023", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being shaped like a lance-head, considerably longer than wide, tapering towards the tip from below the middle; attached at the broad end.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is in the parasagittal plane.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "spear-shaped", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-10-17T14:21:30Z" } ] }, "type" : "CLASS", - "lbl" : "lanceolate" + "lbl" : "parasagittal orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000549", + "id" : "http://purl.obolibrary.org/obo/PATO_0005024", "meta" : { + "definition" : { + "val" : "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed along the longitudinal or anterior-posterior axis.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-10-17T14:24:19Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete far red light sensitivity value" + "lbl" : "longitudinal orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001878", + "id" : "http://purl.obolibrary.org/obo/PATO_0005020", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A shape quality inhering on a bearer by virtue of a bearer's shape lacking in pattern or uniformity; for example, it may have sides of different lengths, different curvatures, or unequal angles.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "S-shaped", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "sigmoidal", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-10-03T10:23:17Z" } ] }, "type" : "CLASS", - "lbl" : "sigmoid" + "lbl" : "irregularly shaped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000548", + "id" : "http://purl.obolibrary.org/obo/PATO_0005021", "meta" : { + "definition" : { + "val" : "Cuspidate quality inhering in a bearer by virtue of the bearer's possessing a single cusp.", + "xrefs" : [ "PATOC:WD" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-10-17T14:14:04Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete blue light sensitivity value" + "lbl" : "unicuspidate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001871", + "id" : "http://purl.obolibrary.org/obo/IAO_0000030", + "type" : "CLASS", + "lbl" : "information content entity" + }, { + "id" : "http://purl.obolibrary.org/obo/pato#value_slim", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Value slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/GO_0051338", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having the shape of a kidney.", - "xrefs" : [ "ISBN:0881923214" ] + "val" : "Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.", + "xrefs" : [ "EC:2.-.-.-", "GOC:ai" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "kidney-shaped", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "bean shaped", + "val" : "transferase regulator", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead." } ] }, "type" : "CLASS", - "lbl" : "reniform" + "lbl" : "regulation of transferase activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001872", + "id" : "http://purl.obolibrary.org/obo/GO_0051347", "meta" : { "definition" : { - "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resemblance to a cube (a 3-D shape with a square cross section).", - "xrefs" : [ "PATOC:MAH" ] + "val" : "Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor.", + "xrefs" : [ "GOC:ai" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "block-like", + "pred" : "hasNarrowSynonym", + "val" : "activation of transferase activity", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "cuboidal", + "val" : "transferase activator", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of transferase activity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead." + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "cuboid" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000541", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete photosensitivity value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000540", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete flooding sensitivity value" + "lbl" : "positive regulation of transferase activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001870", + "id" : "http://purl.obolibrary.org/obo/GO_0051348", "meta" : { "definition" : { - "val" : "A shape quality inhering in a circular disk by virtue of the bearer's having a segment of another circle removed from its edge, so that what remains is a shape enclosed by two circular arcs of different diameters which intersect at two points (usually in such a manner that the enclosed shape does not include the center of the original circle).", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Crescent" ] + "val" : "Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor.", + "xrefs" : [ "GOC:ai" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "xrefs" : [ { - "val" : "Image:http://upload.wikimedia.org/wikipedia/commons/7/74/Crescent.svg" - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#gocheck_do_not_manually_annotate" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "crescentic", + "val" : "transferase inhibitor", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "bow-shaped", + "pred" : "hasExactSynonym", + "val" : "downregulation of transferase activity", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "lunate", + "pred" : "hasExactSynonym", + "val" : "down regulation of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of transferase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down-regulation of transferase activity", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term is useful for grouping, but is too general for manual annotation. Please use a child term instead." } ] }, "type" : "CLASS", - "lbl" : "crescent-shaped" + "lbl" : "negative regulation of transferase activity" }, { - "id" : "http://purl.obolibrary.org/obo/pato#singly_occurring_form_of", + "id" : "http://purl.obolibrary.org/obo/PATO_0005008", "meta" : { - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "monadic_form_of", - "xrefs" : [ ] - } ], + "definition" : { + "val" : "A 3-D shape inhering in a bearer by virtue of the bearer's having dentition characterized by low-crowned teeth. Human teeth are brachydont.", + "xrefs" : [ "DOI:10.1111/j.1469-185X.2011.00176.x" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them." + "val" : "Need to include axiom: brachydont inheres_in some ('tooth crown' and bearer_of 'decreased \nheight')." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-09-09T12:59:35Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "singly_occurring_form_of" + "type" : "CLASS", + "lbl" : "brachydont" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001408", + "id" : "http://purl.obolibrary.org/obo/PATO_0005009", "meta" : { "definition" : { - "val" : "A cellular quality inhering in a bearer by virtue of the bearer's having thin, tail-like projections extending outwards from the cell body.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Ciliated" ] + "val" : "A 3-D shape inhering in a bearer by virtue of the bearer's having an entity in the form of a molar tooth.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-09-09T13:03:00Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "ciliatedness" + "lbl" : "molariform" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001409", + "id" : "http://purl.obolibrary.org/obo/PATO_0005004", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's resembling a long tapered rod.", - "xrefs" : [ "Biology-online:Biology-online" ] + "val" : "A shape that is almost an ellipse.", + "xrefs" : [ "PATOC:WD" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "wasila.dahdul" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2014-09-09T12:36:15Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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South is the polar opposite of north and is perpendicular to east and west.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/South" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0045091" } ] }, "type" : "CLASS", - "lbl" : "obsolete thermosensitive" + "lbl" : "south" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001888", + "id" : "http://purl.obolibrary.org/obo/PATO_0045094", "meta" : { "definition" : { - "val" : "A quality of a liquid inhering in a bearer by virtue of the bearer's ability to mix with (dissolve in) another liquid.", - "xrefs" : [ "Chemicool:Chemicool" ] + "val" : "West is one of the four cardinal directions or points of the compass. It is the opposite direction from east.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/West" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0045092" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "miscibility" + "lbl" : "west" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001404", + "id" : "http://purl.obolibrary.org/obo/PATO_0045090", "meta" : { "definition" : { - "val" : "A cellular quality inhering in a bearer by virtue of bearer's number of nuclei.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The four cardinal directions or cardinal points are the directions north, east, south, and west, commonly denoted by their initials, N, E, S, W. East and west are at right angles to north and south, with east being in the clockwise direction of rotation from north and west being directly opposite east.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Cardinal_direction" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "nucleate quality" + "lbl" : "cardinal direction" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000559", + "id" : "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "FlyBase Drosophila GO ribbon slim" + } ] + }, + "type" : "PROPERTY" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000169", "meta" : { + "definition" : { + "val" : "An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { + } ] + }, + "type" : "CLASS", + "lbl" : "viability" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000168", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute size value" + "lbl" : "obsolete relative time" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001889", + "id" : "http://purl.obolibrary.org/obo/PATO_0001499", "meta" : { "definition" : { - "val" : "A surface feature shape quality inhering in a bearer by virtue of the bearer's having the border, edge, or outline cut into a series of segments of circles resembling a scallop-shell.", - "xrefs" : [ "Oxford:EnglishDictionary" ] + "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter).", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "crenulate", + "val" : "globular", "xrefs" : [ ] }, { - "pred" : "hasExactSynonym", - "val" : "crenate", + "pred" : "hasRelatedSynonym", + "val" : "rotund", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000408" } ] }, "type" : "CLASS", - "lbl" : "scalloped" + "lbl" : "spherical" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001405", + "id" : "http://purl.obolibrary.org/obo/PATO_0001493", + "meta" : { + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001494" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "hypertrophic growth" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000161", "meta" : { "definition" : { - "val" : "A nucleate quality inhering in a bearer by virtue of the bearer's having no nucleus.", - "xrefs" : [ "Biology-online:Biology-online" ] + "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.", + "xrefs" : [ "PATOC:melissa" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "anucleate" + "lbl" : "rate" }, { - "id" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", + "id" : "http://purl.obolibrary.org/obo/PATO_0045070", "meta" : { + "definition" : { + "val" : "A tolerance to an external stimulus which is relatively normal or average", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" } ] }, - "type" : "PROPERTY", - "lbl" : "has_relative_magnitude" + "type" : "CLASS", + "lbl" : "normal tolerance to" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000550", + "id" : "http://purl.obolibrary.org/obo/PATO_0000160", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -48184,68 +48767,56 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete red light sensitivity value" + "lbl" : "obsolete relative incidence" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001882", + "id" : "http://purl.obolibrary.org/obo/PATO_0001494", "meta" : { - "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a slug.", - "xrefs" : [ "PATOC:CJM" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001493" } ] }, "type" : "CLASS", - "lbl" : "limaciform" + "lbl" : "hypotrophic growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001883", + "id" : "http://purl.obolibrary.org/obo/PATO_0045071", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's gradually becoming thicker towards the end.", - "xrefs" : [ "MP:0000576" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "club-shaped", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "clubbed", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "club-like", + "val" : "A tonicity which is relatively normal or average", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001797" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "clavate" + "lbl" : "normal tonicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001880", + "id" : "http://purl.obolibrary.org/obo/PATO_0001491", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having a tail or tail-like projection.", - "xrefs" : [ "PATOC:cjm" ] + "val" : "A paedomorphic growth quality which is due to a reduced rate.", + "xrefs" : [ "PATOC:mh" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "caudal", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "tailed", + "val" : "neotenic growth", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -48254,9 +48825,9 @@ } ] }, "type" : "CLASS", - "lbl" : "caudate" + "lbl" : "neotenous growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000552", + "id" : "http://purl.obolibrary.org/obo/PATO_0000163", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -48267,200 +48838,153 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute temperature sensitivity value" + "lbl" : "obsolete relative rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001881", + "id" : "http://purl.obolibrary.org/obo/PATO_0000162", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's forming two equal obtuse triangles with a short side in common.", - "xrefs" : [ "ISBN:0881923214", "RKC:RKC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "sagittate", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Gradually enlarged at the base, like the head of an arrow." + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "arrow-shaped" + "lbl" : "obsolete absolute rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000551", + "id" : "http://purl.obolibrary.org/obo/PATO_0045072", "meta" : { + "definition" : { + "val" : "A turgor which is relatively normal or average", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete u v light sensitivity value" + "lbl" : "normal turgor" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0003824", + "id" : "http://purl.obolibrary.org/obo/PATO_0001492", "meta" : { - "definition" : { - "val" : "Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.", - "xrefs" : [ "GOC:vw", "ISBN:0198506732" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_metagenomics", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_plant" ], - "xrefs" : [ { - "val" : "Wikipedia:Enzyme" - } ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "enzyme activity", - "xrefs" : [ "GOC:dph", "GOC:tb" ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "molecular_function" + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term will be obsoleted; Use GO:growth and PATO:rate." } ] }, "type" : "CLASS", - "lbl" : "catalytic activity" + "lbl" : "growth rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001817", + "id" : "http://purl.obolibrary.org/obo/PATO_0001497", "meta" : { "definition" : { - "val" : "A fatigability which is relatively low.", + "val" : "A reproductive quality inhering in the young of an animal by virtue of the bearer's disposition to survive and develop normally.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "low fatigability", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001816" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased fatigability" + "lbl" : "brood viability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000969", + "id" : "http://purl.obolibrary.org/obo/PATO_0000165", "meta" : { "definition" : { - "val" : "A size quality inhering in a bearer by virtue of the bearer's being abnormally small.", - "xrefs" : [ "Answers.com:Answers.com" ] + "val" : "A quality in which events occur in sequence.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "dwarfed", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "dwarf-like" + "lbl" : "time" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001818", + "id" : "http://purl.obolibrary.org/obo/PATO_0000164", "meta" : { - "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's increasing over time.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002026" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "progressive" + "lbl" : "obsolete relative temporal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000968", + "id" : "http://purl.obolibrary.org/obo/PATO_0001498", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001439" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "obsolete albino value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001815", - "meta" : { - "definition" : { - "val" : "A strength quality inhering in a bearer by virtue of the bearer's disposition to lose strength.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "fatigability" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001816", + "id" : "http://purl.obolibrary.org/obo/PATO_0001495", "meta" : { "definition" : { - "val" : "A fatigability which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A concave quality inhering in a bearer by virtue of the bearer's shape being a V-shaped cut.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high fatigability", + "pred" : "hasRelatedSynonym", + "val" : "indented", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001817" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased fatigability" + "lbl" : "notched" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001819", + "id" : "http://purl.obolibrary.org/obo/PATO_0000167", "meta" : { "definition" : { - "val" : "A morphological quality inhering in a bearer by virtue of the bearer's absence or closure of a normal body orifice or tubular passage.", + "val" : "A limited, often assigned period of activity.", "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "atresia", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "atretic" + "lbl" : "obsolete bouts" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000961", + "id" : "http://purl.obolibrary.org/obo/PATO_0000166", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -48471,311 +48995,253 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative opacity value" + "lbl" : "obsolete absolute time" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000960", + "id" : "http://purl.obolibrary.org/obo/PATO_0001496", "meta" : { + "definition" : { + "val" : "A reproductive quality inhering in the young of an animal by virtue of the bearer's being cared for at one time.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute opacity" + "lbl" : "brood quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001810", + "id" : "http://purl.obolibrary.org/obo/PATO_0045077", "meta" : { "definition" : { - "val" : "A grooved texture quality inhering in a bearer by virtue of the bearer's being marked by one or more creases in a normally smooth surface.", - "xrefs" : [ "url:http://www.thefreedictionary.com/wrinkled" ] + "val" : "A variability of size which is relatively normal or average", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "wrinkled" + "lbl" : "normal variability of size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000963", + "id" : "http://purl.obolibrary.org/obo/PATO_0045078", "meta" : { "definition" : { - "val" : "A optical quality inhering in a bearer by virtue of the bearer's not being clear; not transmitting or reflecting light or radiant energy.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "clouding", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "non-transparent", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "cloudy", + "val" : "A variability of temperature which is relatively normal or average", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000964" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "opaque" + "lbl" : "normal variability of temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000962", + "id" : "http://purl.obolibrary.org/obo/PATO_0045079", "meta" : { + "definition" : { + "val" : "A velocity which is relatively normal or average", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute opacity value" + "lbl" : "normal velocity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001813", + "id" : "http://purl.obolibrary.org/obo/PATO_0045073", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's lack elastic tension that facilitate response to stimuli.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality of aprocess that has a value that is normal or average.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-21T14:11:01Z" } ] }, "type" : "CLASS", - "lbl" : "atonicity" + "lbl" : "normal process quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000965", + "id" : "http://purl.obolibrary.org/obo/PATO_0001490", "meta" : { "definition" : { - "val" : "A pattern quality of inhering in a bearer by virtue of the correspondence in size, shape, and relative position of the bearer's parts on opposite sides of a dividing line or median plane or about a center or axis.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A growth quality of a process inhering in an organism, structure, or group of organisms by virtue of the bearer's reduced or increased growth.", + "xrefs" : [ "PATOC:MAH" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "symmetry" + "lbl" : "heterochronic growth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000964", + "id" : "http://purl.obolibrary.org/obo/PATO_0045074", "meta" : { "definition" : { - "val" : "A optical quality inhering in a bearer by virtue of the bearer's lacking opacity.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "hyaline", - 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}, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "wavy", + "val" : "A variability of rate which is relatively normal or average", "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "undulating", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "waved", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "sinuate", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "rippled", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "undulated", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001610" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001939" - } ] - }, - "type" : "CLASS", - "lbl" : "undulate" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001811", - "meta" : { - "definition" : { - "val" : "A relaxation which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high relaxation", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "GO has now relevant relation terms which should be used instead." + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "obsolete increased relaxation" + "lbl" : "normal variability of rate" }, { - 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}, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete symmetry value" + "lbl" : "obsolete body position" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0010562", + "id" : "http://purl.obolibrary.org/obo/PATO_0045080", "meta" : { "definition" : { - "val" : "Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.", - "xrefs" : [ "GOC:dph", "GOC:tb" ] + "val" : "A virulence which is relatively normal or average", + "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "biological_process" + "val" : "quality" } ] }, "type" : "CLASS", - 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"val" : "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of male and external sexual characteristics of female.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A viscosity which is relatively normal or average", + "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "male pseudohermaphrodite" + "lbl" : "normal viscosity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000979", + "id" : "http://purl.obolibrary.org/obo/PATO_0000171", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -48786,77 +49252,77 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete porosity value" + "lbl" : "obsolete absolute yield" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001829", + "id" : "http://purl.obolibrary.org/obo/PATO_0000174", "meta" : { - "definition" : { - "val" : "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of female and external sexual characteristics of male.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "female pseudohermaphrodite" + "lbl" : "obsolete autonomic function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001826", + "id" : "http://purl.obolibrary.org/obo/PATO_0045082", "meta" : { "definition" : { - "val" : "A wetness quality that is relatively low.", - 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"xrefs" : [ "WordNet:WordNet" ] + "val" : "A wetness which is relatively normal or average", + "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "pseudohermaphrodite" + "lbl" : "normal wetness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001820", + "id" : "http://purl.obolibrary.org/obo/PATO_0000173", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - 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"synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "unperforated", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002112" } ] }, "type" : "CLASS", - "lbl" : "imperforate" + "lbl" : "obsolete behavioral function" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000971", + "id" : "http://purl.obolibrary.org/obo/PATO_0000178", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute permeability" + "lbl" : "obsolete relative function" }, { - 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Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0051869" } ] }, "type" : "CLASS", - "lbl" : "light phase" + "lbl" : "response to stimulus" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001836", + "id" : "http://purl.obolibrary.org/obo/pato#absent_slim", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer with some kind of aperture or opening that is blocked or clogged.", - "xrefs" : [ "answers.com:answers.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Absent/present slim" } ] }, - "type" : "CLASS", - "lbl" : "congested" + "type" : "PROPERTY" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000502", + "id" : "http://purl.obolibrary.org/obo/PATO_0000194", "meta" : { - 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"xrefs" : [ "answers.com:answers.com" ] + "val" : "A speed which is relatively normal or average", + "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "abrased" + "lbl" : "normal speed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000519", + "id" : "http://purl.obolibrary.org/obo/PATO_0000192", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -49794,148 +50175,186 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete humidity sensitivity value" + "lbl" : "obsolete locomotor_activity" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0098590", + "id" : "http://purl.obolibrary.org/obo/PATO_0045064", "meta" : { "definition" : { - 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}, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative disease sensitivity value" + "lbl" : "sensitivity of a process to oxygen" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000996", + "id" : "http://purl.obolibrary.org/obo/PATO_0000124", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -49946,37 +50365,58 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute viscosity value" + "lbl" : "obsolete relative length" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000511", + "id" : "http://purl.obolibrary.org/obo/PATO_0001455", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's dependence on oxygen.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001456" + } ] + }, + "type" : "CLASS", + "lbl" : "aerobic" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000127", + "meta" : { + "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute disease sensitivity value" + "lbl" : "obsolete relative mass" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001841", + "id" : "http://purl.obolibrary.org/obo/PATO_0001456", "meta" : { "definition" : { - "val" : "An intensity which is characterized by temporary abatement in severity.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's independence on oxygen.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001455" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "remittent intensity" + "lbl" : "anaerobic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000995", + "id" : "http://purl.obolibrary.org/obo/PATO_0000126", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -49987,178 +50427,163 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete viscosity value" + "lbl" : "obsolete absolute mass" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000998", + "id" : "http://purl.obolibrary.org/obo/PATO_0000129", "meta" : { - "definition" : { - "val" : "A viscosity quality inhering in a bearer by virtue of the bearer's having viscosity.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "viscous" + "lbl" : "obsolete absolute weight" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000514", + "id" : "http://purl.obolibrary.org/obo/PATO_0000128", "meta" : { + "definition" : { + "val" : "A physical quality inhering in a bearer that has mass near a gravitational body.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Weight" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete intolerant value" + "lbl" : "weight" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001846", + "id" : "http://purl.obolibrary.org/obo/PATO_0001459", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001460" } ] }, "type" : "CLASS", - "lbl" : "tangled" + "lbl" : "aerobic (for occurrence)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001847", + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_2759", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "stenosis", + "val" : "eukaryotes", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eucarya", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eucaryotae", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "eukaryotes", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "stricture", + "val" : "eucaryotes", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eukarya", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eukaryotae", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "stenotic", + "val" : "eucaryotes", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001837" - } ] - }, - "type" : "CLASS", - "lbl" : "constricted" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000997", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "hasRelatedSynonym", + "val" : "Eucaryotae", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete relative viscosity value" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000513", - "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's lacking sensitivity toward an external stimulus.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "insensitive", + "val" : "eukaryotes", "xrefs" : [ ] }, { "pred" : "hasRelatedSynonym", - "val" : "resistant", + "val" : "Eukaryotae", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000516" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "hasRelatedSynonym", + "val" : "eukaryotes", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eucarya", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Eukarya", + "xrefs" : [ ] } ] }, "type" : "CLASS", - "lbl" : "insensitive toward" + "lbl" : "Eukaryota" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001844", + "id" : "http://purl.obolibrary.org/obo/PATO_0001450", "meta" : { "definition" : { - "val" : "An acidity which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of extracellular fluid.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "oedema", + "xrefs" : [ ] + }, { "pred" : "hasExactSynonym", - "val" : "high acidity", + "val" : "oedematous", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001843" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "increased acidity" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000516", - "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having sensitivity toward an external stimulus.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "sensitive", + "val" : "edemic", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "edema", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "oedemic", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000513" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sensitive toward" + "lbl" : "edematous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000515", + "id" : "http://purl.obolibrary.org/obo/PATO_0001453", "meta" : { "definition" : { - "val" : "A resistance quality inhering in a bearer by virtue of its disposition to endure or being insensitive to a stimulus.", + "val" : "An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "tolerant", + "val" : "detached", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -50167,39 +50592,37 @@ } ] }, "type" : "CLASS", - "lbl" : "tolerant to" + "lbl" : "detached from" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001845", + "id" : "http://purl.obolibrary.org/obo/PATO_0000121", "meta" : { - "definition" : { - "val" : "A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm lacking pattern.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "irregular rhythm" + "lbl" : "obsolete relative height" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000999", + "id" : "http://purl.obolibrary.org/obo/PATO_0001454", "meta" : { "definition" : { - "val" : "A quality of a single process inhering in a bearer by virtue of the bearer's successive change from one thing or state to another and back again.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "A sensitivity quality inhering in a bearer by virtue of the bearer's dependence on oxygen.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "alternation" + "lbl" : "sensitivity to oxygen" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000990", + "id" : "http://purl.obolibrary.org/obo/PATO_0000120", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -50210,24 +50633,39 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete consistent" + "lbl" : "obsolete absolute height" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000992", + "id" : "http://purl.obolibrary.org/obo/PATO_0001451", "meta" : { "definition" : { - "val" : "A physical quality of a liquid inhering in a bearer by virtue of the bearer's disposition to internal resistance to flow.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "An extended swelling in plant organs caused primarily by an excessive accumulation of water.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "oedemic", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "edemic", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "oedematous", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "viscosity" + "lbl" : "obsolete edematous (sensu botany)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000991", + "id" : "http://purl.obolibrary.org/obo/PATO_0000123", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -50238,583 +50676,280 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete inconsistent" + "lbl" : "obsolete absolute length" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000925", + "id" : "http://purl.obolibrary.org/obo/PATO_0000122", "meta" : { + "definition" : { + "val" : "A 1-D extent quality which is equal to the distance between two points.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "'anterior end of organism' is-opposite-of 'posterior end of organism'" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "'increase in temperature' is-opposite-of 'decrease in temperature'" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#is_class_level", - "val" : "true" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "is_opposite_of" } ] }, - "type" : "PROPERTY", - "lbl" : "is_opposite_of" + "type" : "CLASS", + "lbl" : "closure" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002608", + "id" : "http://purl.obolibrary.org/obo/PATO_0001468", "meta" : { "definition" : { - "val" : "Inverse of 'causal agent in process'", - "xrefs" : [ ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the back or upper surface of an organism.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "curved posterior (human torso)", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "curved superior (human head)", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", - "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "process has causal agent" + "type" : "CLASS", + "lbl" : "curved dorsal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000936", + "id" : "http://purl.obolibrary.org/obo/PATO_0001469", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's terminating abruptly by having or as if having an end or point cut off.", - "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the abdomen of an organism.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "truncate", + "val" : "curved anterior (human torso)", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "curved inferior (human head)", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -50823,247 +50958,231 @@ } ] }, "type" : "CLASS", - "lbl" : "truncated" + "lbl" : "curved ventral" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000935", + "id" : "http://purl.obolibrary.org/obo/PATO_0000135", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative photosensitivity" + "lbl" : "obsolete relative_angle" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000938", + "id" : "http://purl.obolibrary.org/obo/PATO_0000138", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's exhibiting organisation.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000937" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "organized" + "lbl" : "obsolete absolute orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000937", + "id" : "http://purl.obolibrary.org/obo/PATO_0001466", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking organisation.", + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the front of an organism.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000938" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "curved anterior", + "xrefs" : [ ] }, { + "pred" : "hasExactSynonym", + "val" : "curved superior (human torso)", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "disorganized" + "lbl" : "curved rostral" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000939", + "id" : "http://purl.obolibrary.org/obo/PATO_0001467", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "definition" : { + "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved towards the part of the body from which the tail arises.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "curved posterior", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "curved inferior (human torso)", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete regular shape" + "lbl" : "curved caudal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000930", + "id" : "http://purl.obolibrary.org/obo/PATO_0000137", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" } ] }, - "type" : "CLASS", - "lbl" : "obsolete light_quality sensitivity" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000932", + "id" : "http://purl.obolibrary.org/obo/PATO_0000139", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete far red light sensitivity" + "lbl" : "obsolete relative orientation" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000931", + "id" : "http://purl.obolibrary.org/obo/PATO_0001460", "meta" : { + "definition" : { + "val" : "A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location without oxygen.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001459" } ] }, "type" : "CLASS", - "lbl" : "obsolete blue light sensitivity" + "lbl" : "anaerobic (for occurrence)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000934", + "id" : "http://purl.obolibrary.org/obo/PATO_0001461", "meta" : { + "definition" : { + "val" : "A physical quality inhering in a liquid by virtue of the bearer's ability to attraction of molecules at its surface as a result of unbalanced molecular cohesive forces.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Surface_tension" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete u v light sensitivity" + "lbl" : "surface tension" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000933", + "id" : "http://purl.obolibrary.org/obo/PATO_0000130", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete red light sensitivity" + "lbl" : "obsolete relative weight" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000947", + "id" : "http://purl.obolibrary.org/obo/PATO_0000132", "meta" : { - "definition" : { - "val" : "A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "ellipsoid", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "ellipse-shaped", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "oval", - "xrefs" : [ ] + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "hasRelatedSynonym", - "val" : "ovoid", - "xrefs" : [ ] + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "hasExactSynonym", - "val" : "elliptical", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000060" } ] }, - "type" : "CLASS", - "lbl" : "elliptic" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000946", + "id" : "http://purl.obolibrary.org/obo/PATO_0001464", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a somewhat elongated form with approximately parallel sides.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality that is equal to the potential energy per unit charge associated with a static (time-invariant) electric field, also called the electrostatic potential.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Electric_potential" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "oblong" + "lbl" : "electric potential" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000949", + "id" : "http://purl.obolibrary.org/obo/PATO_0000131", "meta" : { - "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's being abnormally flattened or coalesced.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "fasciated" + "lbl" : "obsolete relative size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000948", + "id" : "http://purl.obolibrary.org/obo/PATO_0001465", "meta" : { "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having a sinus or rounded lobe at the base.", + "val" : "A malformed quality inhering in a bearer by virtue of the bearer's all-encompassing, grotesque morphological defects.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "cordiform", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "cordate", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Having the shape of heart." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "heart shaped" + "lbl" : "monstrous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000941", + "id" : "http://purl.obolibrary.org/obo/PATO_0001462", "meta" : { "definition" : { - "val" : "A structural quality inhering in a cytoplasm that contains fluid filled cavities.", - "xrefs" : [ "PATOC:mh" ] + "val" : "A quality inhering in a cell's plasma membrane by virtue of the electrical potential difference across it.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Membrane_potential" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "vacuolated" + "lbl" : "membrane potential" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000940", + "id" : "http://purl.obolibrary.org/obo/PATO_0000134", "meta" : { - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" @@ -51073,339 +51192,394 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete irregular shape" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000943", - "meta" : { - "basicPropertyValues" : [ { - 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"xrefs" : [ "PATOC:GVG" ] + "val" : "A quality inhering in a cell's plasma membrane by virtue of a brief fluctuation in the bearer's potential caused by the rapid opening and closing of voltage-gated ion channels.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Action_potential" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "epinastic" + "lbl" : "action potential" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000944", + "id" : "http://purl.obolibrary.org/obo/PATO_0000133", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a sharp or tapered end or point.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object.", + "xrefs" : [ "PATOC:JE" ] }, - 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"val" : "A sensitivity to irradiation which is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high sensitivity to irradiation", + "val" : "An elevation which is relatively normal or average", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0001807" } ] }, "type" : "CLASS", - "lbl" : "increased sensitivity to irradiation" + "lbl" : "normal elevation" }, { - 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"val" : "A color between white and black colors.", - "xrefs" : [ "http://en.wikipedia.org/wiki/Grey" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "plumbeous", + "val" : "An efficiency which is relatively normal or average.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "grey" + "lbl" : "normal efficiency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000952", + "id" : "http://purl.obolibrary.org/obo/PATO_0045016", "meta" : { "definition" : { - "val" : "A color consisting of dark orange, red, of very low intensity.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Brown" ] + "val" : "An elasticity which is relatively normal or average.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "brown" + "lbl" : "normal elasticity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000951", + "id" : "http://purl.obolibrary.org/obo/PATO_0045017", "meta" : { "definition" : { - "val" : "A color that falls about midway between red and blue in hue.", - 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"xrefs" : [ "answers.com:answers.com" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "loose" + "lbl" : "obsolete absolute temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000953", + "id" : "http://purl.obolibrary.org/obo/PATO_0001479", "meta" : { - "definition" : { - "val" : "A color hue with high-medium wavelength that of that portion of the visible spectrum lying between red and yellow, evoked in the human observer by radiant energy with wavelengths of approximately 585 to 620 nanometers.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Orange" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001852" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "orange" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001803", + "id" : "http://purl.obolibrary.org/obo/RO_0003001", "meta" : { "definition" : { - "val" : "A photosensitivity quality inhering in a bearer by virtue of the bearer's disposition to being susceptible to damage by light.", - "xrefs" : [ "answers.com:answers.com" ] + "val" : "a produced_by b iff some process that occurs_in b has_output a.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "xrefs" : [ { + "val" : "RO:0003001" + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "produced_by" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" } ] }, - "type" : "CLASS", - "lbl" : "phototoxic" + "type" : "PROPERTY", + "lbl" : "produced_by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001800", + "id" : "http://purl.obolibrary.org/obo/PATO_0000146", "meta" : { "definition" : { - "val" : "A composition quality inhering in an bearer by virtue of the quantities or relative ratios of water of the inhering entity.", + "val" : "A physical quality of the thermal energy of a system.", "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], @@ -51415,58 +51589,35 @@ } ] }, "type" : "CLASS", - "lbl" : "water composition" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000956", - "meta" : { - "definition" : { - "val" : "A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000955" - } ] - }, - "type" : "CLASS", - "lbl" : "sterile" + "lbl" : "temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000955", + "id" : "http://purl.obolibrary.org/obo/PATO_0000149", "meta" : { - "definition" : { - "val" : "A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000956" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "fertile" + "lbl" : "obsolete relative temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001801", + "id" : "http://purl.obolibrary.org/obo/PATO_0001477", "meta" : { "definition" : { - "val" : "A composition quality inhering in an bearer by virtue of the reduction in amount of water the bearer contains.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Dehydrated" ] + "val" : "A positional quality inhering in a bearer by virtue of the bearer's being drawn in or pulled back from any given point.", + "xrefs" : [ "Dictionary.com:Dictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "dry", + "pred" : "hasBroadSynonym", + "val" : "moved", "xrefs" : [ ] }, { - "pred" : "hasExactSynonym", - "val" : "dehydrated", + "pred" : "hasRelatedSynonym", + "val" : "retruded", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -51475,22 +51626,24 @@ } ] }, "type" : "CLASS", - "lbl" : "decreased water composition" + "lbl" : "retracted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000903", + "id" : "http://purl.obolibrary.org/obo/PATO_0001478", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being broken down; caved in.", + "xrefs" : [ "Dictionary.com:Dictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete cms-hl type value" + "lbl" : "collapsed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000902", + "id" : "http://purl.obolibrary.org/obo/PATO_0000148", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -51501,132 +51654,222 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete chinsurah boro type value" + "lbl" : "obsolete body temperature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000905", + "id" : "http://purl.obolibrary.org/obo/RO_0003000", "meta" : { + "definition" : { + "val" : "a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "xrefs" : [ { + "val" : "RO:0003000" + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "produces" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Melissa Haendel" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue." } ] }, - "type" : "CLASS", - "lbl" : "obsolete f1 fertile" + "type" : "PROPERTY", + "lbl" : "produces" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000904", + "id" : "http://purl.obolibrary.org/obo/PATO_0001471", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001665" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "obsolete wild abortive value" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000907", + "id" : "http://purl.obolibrary.org/obo/PATO_0001472", "meta" : { + "definition" : { + "val" : "A depth which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "low depth", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "shallow", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001596" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001692" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete f2 fertile" + "lbl" : "decreased depth" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000906", + "id" : "http://purl.obolibrary.org/obo/ENVO_00010483", "meta" : { + "definition" : { + "val" : "A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system.", + "xrefs" : [ "DOI:10.1186/2041-1480-4-43", "MA:ma", "ORCID:0000-0002-4366-3088", "URL:http://ontology.buffalo.edu/smith/articles/niches.html" ] + }, "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "F1 infertile", + "pred" : "hasExactSynonym", + "val" : "portion of environmental material", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete f1 sterile" + "lbl" : "environmental material" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000909", + "id" : "http://purl.obolibrary.org/obo/PATO_0000141", "meta" : { + "definition" : { + "val" : "A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "conformation", + "xrefs" : [ "VT:1000738" ] + }, { + "pred" : "hasExactSynonym", + "val" : "relational structural quality", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001452" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete intercross fertile" + "lbl" : "structure" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000908", + "id" : "http://purl.obolibrary.org/obo/PATO_0001470", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity.", + "xrefs" : [ "PATOC:nw" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "ratio", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quotient", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "proportion", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "proportionality", + "xrefs" : [ ] + }, { "pred" : "hasRelatedSynonym", - "val" : "F2 infertile", + "val" : "rate", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Examples: height to weight; brain size to body size. These could all be children of proportionality. Proportions can be measured as ratios. Some measures may be dimensionless. Not all ratios measure proportionality, eg m/s measures velocity which is not a proportion in the sense defined above, it is a quality in its own right." } ] }, "type" : "CLASS", - "lbl" : "obsolete f2 sterile" + "lbl" : "proportionality to" }, { - "id" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", + "id" : "http://purl.obolibrary.org/obo/PATO_0000140", "meta" : { "definition" : { - "val" : "q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "relational spatial quality", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "location", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "placement", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001631" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001032" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'." } ] }, - "type" : "PROPERTY", - "lbl" : "decreased_in_magnitude_relative_to" + "type" : "CLASS", + "lbl" : "position" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000901", + "id" : "http://purl.obolibrary.org/obo/PATO_0001475", "meta" : { + "definition" : { + "val" : "A position which is relatively high.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasRelatedSynonym", - "val" : "backcross infertile", + "val" : "high position", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001476" } ] }, "type" : "CLASS", - "lbl" : "obsolete backcross sterile" + "lbl" : "increased position" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000900", + "id" : "http://purl.obolibrary.org/obo/PATO_0000143", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -51637,13 +51880,32 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete backcross fertile" + "lbl" : "obsolete addictive substance" }, { - "id" : "http://purl.obolibrary.org/obo/CARO_0030000", + "id" : "http://purl.obolibrary.org/obo/PATO_0001476", + "meta" : { + "definition" : { + "val" : "A positional which is relatively low.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "low position", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001475" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, "type" : "CLASS", - "lbl" : "biological entity" + "lbl" : "decreased position" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000914", + "id" : "http://purl.obolibrary.org/obo/PATO_0000142", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -51654,22 +51916,29 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete continuant" + "lbl" : "obsolete substance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000913", + "id" : "http://purl.obolibrary.org/obo/PATO_0001473", "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's being present in two copies.", + "xrefs" : [ "Dictionary.com:Dictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "doubled", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete qualitative value" + "lbl" : "duplicated" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000916", + "id" : "http://purl.obolibrary.org/obo/PATO_0000145", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -51677,503 +51946,436 @@ }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a liquid; PATO:0001548 '" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute thickness" + "lbl" : "obsolete liquid substance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000915", + "id" : "http://purl.obolibrary.org/obo/PATO_0001474", "meta" : { "definition" : { - "val" : "A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "An oriented quality inhering in a bearer by virtue of the bearer's axis being positioned forward.", + "xrefs" : [ "bdid:bdid" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "thickness" + "lbl" : "anteverted" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000918", + "id" : "http://purl.obolibrary.org/obo/GO_0071944", "meta" : { "definition" : { - "val" : "A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The part of a cell encompassing the cell cortex, the plasma membrane, and any external encapsulating structures.", + "xrefs" : [ "GOC:mah" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "cellular_component" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "midori" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2010-10-04T01:51:47Z" } ] }, "type" : "CLASS", - "lbl" : "volume" + "lbl" : "cell periphery" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000917", + "id" : "http://purl.obolibrary.org/obo/PATO_0000144", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term was made obsolete because it is not a quality. To update annotations, consider the following term 'quality of a solid; 'PATO:0001546'" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative thickness" + "lbl" : "obsolete solid substance" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000919", + "id" : "http://purl.obolibrary.org/obo/PATO_0045011", "meta" : { + "definition" : { + "val" : "A contractility which is relatively normal or average.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute volume" + "lbl" : "normal contractility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000910", + "id" : "http://purl.obolibrary.org/obo/PATO_0045012", "meta" : { - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "intercross infertile", + "definition" : { + "val" : "A coordination which is relatively normal or average.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "obsolete intercross sterile" + "lbl" : "normal coordination" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000912", + "id" : "http://purl.obolibrary.org/obo/PATO_0045013", "meta" : { "definition" : { - "val" : "A rate which is relatively high.", - "xrefs" : [ "PATO:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "high rate", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "fast rate", + "val" : "A curvature which is relatively normal or average.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000911" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "increased rate" + "lbl" : "normal curvature" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000911", + "id" : "http://purl.obolibrary.org/obo/PATO_0045014", "meta" : { "definition" : { - "val" : "A rate which is relatively low.", - "xrefs" : [ "PATO:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "slow rate", + "val" : "A distance which is relatively normal or average.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0000912" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "decreased rate" + "lbl" : "normal distance" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0042995", + "id" : "http://purl.obolibrary.org/obo/PATO_0045010", "meta" : { "definition" : { - "val" : "A prolongation or process extending from a cell, e.g. a flagellum or axon.", - "xrefs" : [ "GOC:jl", "http://www.cogsci.princeton.edu/~wn/" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon", "http://purl.obolibrary.org/obo/go#goslim_pir" ], - "synonyms" : [ { - "pred" : "hasBroadSynonym", - "val" : "cellular process", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "cellular projection", - "xrefs" : [ ] - }, { - "pred" : "hasBroadSynonym", - "val" : "cell process", + "val" : "A concentration which is relatively normal or average.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000412", - "val" : "http://purl.obolibrary.org/obo/go.owl" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cell projection" + "lbl" : "normal concentration" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0005929", + "id" : "http://purl.obolibrary.org/obo/PATO_0045026", "meta" : { "definition" : { - "val" : "A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body.", - "xrefs" : [ "GOC:cilia", "GOC:curators", "GOC:kmv", "GOC:vw", "ISBN:0198547684", "PMID:16824949", "PMID:17009929", "PMID:20144998" ] + "val" : "A life span which is relatively normal or average.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_generic" ], - "xrefs" : [ { - "val" : "NIF_Subcellular:sao787716553" - }, { - "val" : "Wikipedia:Cilium" + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" }, { - "val" : "FMA:67181" - } ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "microtubule-based flagellum", - "xrefs" : [ ] - }, { - "pred" : "hasNarrowSynonym", - "val" : "primary cilium", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "eukaryotic flagellum", - "xrefs" : [ ] + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" }, { - "pred" : "hasRelatedSynonym", - "val" : "flagellum", + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "normal life span" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0045027", + "meta" : { + "definition" : { + "val" : "A magnetism which is relatively normal or average.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms." + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0072372" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "cilium" + "lbl" : "normal magnetism" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0005575", + "id" : "http://purl.obolibrary.org/obo/PATO_0045028", "meta" : { "definition" : { - "val" : "A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome).", - "xrefs" : [ "GOC:pdt", "NIF_Subcellular:sao1337158144" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_generic", "http://purl.obolibrary.org/obo/go#goslim_yeast", "http://purl.obolibrary.org/obo/go#goslim_aspergillus", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_pir", "http://purl.obolibrary.org/obo/go#goslim_candida", "http://purl.obolibrary.org/obo/go#goslim_metagenomics" ], - "xrefs" : [ { - "val" : "NIF_Subcellular:sao1337158144" - } ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "cell or subcellular entity", + "val" : "A male fertility which is relatively normal or average.", "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" }, { - "pred" : "hasRelatedSynonym", - "val" : "subcellular entity", - "xrefs" : [ "NIF_Subcellular:nlx_subcell_100315" ] + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" }, { - "pred" : "hasExactSynonym", - "val" : "cellular component", + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "normal male fertility" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0045029", + "meta" : { + "definition" : { + "val" : "A male receptivity which is relatively normal or average.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "GO:0008372" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "cellular_component" + "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code \"no data\" (ND), is used to indicate this." + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "cellular_component" + "lbl" : "normal male receptivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002269", + "id" : "http://purl.obolibrary.org/obo/GO_0110165", "meta" : { "definition" : { - "val" : "A structural quality of the collection or massing of one physical object within another physical object.", - "xrefs" : [ "PATOC:CVC" ] + "val" : "A part of a cellular organism that is either an immaterial entity or a material entity with granularity above the level of a protein complex but below that of an anatomical system. Or, a substance produced by a cellular organism with granularity above the level of a protein complex.", + "xrefs" : [ "GOC:kmv" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "pooled", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "cellular_component" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-10-26T01:57:02Z" + "val" : "2019-08-12T18:01:37Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "kmv" } ] }, "type" : "CLASS", - "lbl" : "accumulation" + "lbl" : "cellular anatomical entity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000084", + "id" : "http://purl.obolibrary.org/obo/PATO_0000158", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000057" } ] }, - "type" : "CLASS", - "lbl" : "obsolete relative rhythym" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002263", + "id" : "http://purl.obolibrary.org/obo/PATO_0000157", "meta" : { - "definition" : { - "val" : "A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group.", - "xrefs" : [ "url:http://en.wikipedia.org/wiki/Dephosphorylation" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-09-16T09:04:21Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002220" } ] }, "type" : "CLASS", - "lbl" : "dephosphorylated" + "lbl" : "obsolete absolute temporal" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000083", + "id" : "http://purl.obolibrary.org/obo/PATO_0001488", "meta" : { "definition" : { - "val" : "A quality that exists by virtue of being a particular point in the time of a cycle.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A cellular quality inhering in a cell by virtue of whether the bearer exhibits the ability to move spontaneously.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Term should be obsoleted and the GO term cellular motility should be used instead." } ] }, "type" : "CLASS", - "lbl" : "phase" + "lbl" : "cellular motility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002264", + "id" : "http://purl.obolibrary.org/obo/PATO_0000159", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's being arranged in a systematic fashion.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-09-16T10:22:52Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "organization quality" + "lbl" : "obsolete absolute incidence" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000086", + "id" : "http://purl.obolibrary.org/obo/PATO_0001489", "meta" : { "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001433" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "obsolete absolute sensitivity" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002261", + "id" : "http://purl.obolibrary.org/obo/PATO_0000150", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's location within another entity.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-09-09T09:36:56Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "located in" + "lbl" : "texture" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002262", + "id" : "http://purl.obolibrary.org/obo/PATO_0001482", "meta" : { "definition" : { - "val" : "A quality inhering in a protein or a molecule by virtue of the addition of a phosphate (PO4) group to the bearer.", - "xrefs" : [ "url:http://en.wikipedia.org/wiki/Phosphorylation" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line.", + "xrefs" : [ "Dictionary.com:Dictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-09-16T08:57:56Z" } ] }, "type" : "CLASS", - "lbl" : "phosphorylation" + "lbl" : "prominent" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000050", + "id" : "http://purl.obolibrary.org/obo/PATO_0001483", "meta" : { "definition" : { - "val" : "a core relation that holds between a part and its whole", - "xrefs" : [ ] + "val" : "Absence of an organ, tissue or cell due to failure to develop from a primordium or precursor cell.", + "xrefs" : [ "PATOC:GVG", "PATOC:PortlandMeetingFeb2015" ] }, - "xrefs" : [ { - "val" : "BFO:0000050" + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "aplasia", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "undeveloped", + "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "is part of" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this day is part of this year (occurrent parthood)" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000031" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "part_of" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000004" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000003" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000002" + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "With aplasia, the primordium or precursor develops, but does not proceed in its development to a mature structure" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000020" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000017" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0040042", - "val" : "http://purl.obolibrary.org/obo/BFO_0000019" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "part_of" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my brain is part of my body (continuant parthood, two material entities)" - }, { + } ] + }, + "type" : "CLASS", + "lbl" : "aplastic" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001480", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's resembling a sponge in elasticity, absorbency, or porousness.", + "xrefs" : [ "Answers.com:Answers.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "external" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "part of" + "type" : "CLASS", + "lbl" : "spongy" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000085", + "id" : "http://purl.obolibrary.org/obo/PATO_0000152", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation.", + "val" : "A quality inhering in a bearer by virtue of the bearer's sensitivity towards a fixed location or value where a change is observed; upper limit.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "sensitivity", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "sensitivity toward" + "lbl" : "threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000088", + "id" : "http://purl.obolibrary.org/obo/PATO_0000151", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -52184,46 +52386,39 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute disease sensitivity" + "lbl" : "obsolete relative texture" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002267", + "id" : "http://purl.obolibrary.org/obo/PATO_0001481", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having an oblique or slanted direction.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-10-05T12:34:31Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "edge shape" + "lbl" : "sloped" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002268", + "id" : "http://purl.obolibrary.org/obo/PATO_0001486", "meta" : { "definition" : { - "val" : "A positional quality inhering in a bearer by virtue of the bearer's being located in a position equidistant from edges.", - "xrefs" : [ "PATOC:OREGON" ] + "val" : "An age quality that exists by virtue of the time (years and months) that the bearer has existed.", + "xrefs" : [ "WordNet:Wordnet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-10-05T01:09:32Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "centered" + "lbl" : "chronological age" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000087", + "id" : "http://purl.obolibrary.org/obo/PATO_0000154", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -52234,918 +52429,800 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete disease sensitivity" + "lbl" : "obsolete pain threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002265", + "id" : "http://purl.obolibrary.org/obo/PATO_0001487", "meta" : { "definition" : { - "val" : "A behavioral quality of a process inhering in a bearer by virtue of the bearer's disposition to exhibit marked activity.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A time quality inhering in a bearer by virtue of the bearer's growing old; aging.", + "xrefs" : [ "answers.com:answers.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-09-21T06:56:58Z" } ] }, "type" : "CLASS", - "lbl" : "behavioural activity" + "lbl" : "senescent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000089", + "id" : "http://purl.obolibrary.org/obo/PATO_0000153", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative disease sensitivity" + "lbl" : "obsolete absolute threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002266", + "id" : "http://purl.obolibrary.org/obo/PATO_0001484", "meta" : { "definition" : { - "val" : "A shape that inheres in a 3 dimensional entity.", - "xrefs" : [ "PATOC:OREGON" ] + "val" : "A quality of a process which occurs near to or not long before the present.", + "xrefs" : [ "WordNet:WordNet" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-10-05T12:31:16Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "3-D shape" + "lbl" : "recent" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000051", + "id" : "http://purl.obolibrary.org/obo/PATO_0000156", "meta" : { - "definition" : { - "val" : "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2.", - "xrefs" : [ "PATOC:CJM" ] - }, - "xrefs" : [ { - "val" : "BFO:0000051" - } ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "this year has part this day (occurrent parthood)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "has_part" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "has_part" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", - "val" : "my body has part my brain (continuant parthood, two material entities)" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "external" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "has part" + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0000057" } ] }, - "type" : "PROPERTY", - "lbl" : "has_part" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000080", + "id" : "http://purl.obolibrary.org/obo/PATO_0000155", "meta" : { - "definition" : { - "val" : "A physical quality of a process inhering in a bearer by virtue of the size of the bearer's maximum displacement from the 'normal' position, when periodic motion is taking place.", - "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "amplitude" + "lbl" : "obsolete relative threshold" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002260", + "id" : "http://purl.obolibrary.org/obo/PATO_0001485", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being partially upright in position or posture.", + "val" : "A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together.", "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "compact", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "dense", + "xrefs" : [ ] + }, { "pred" : "hasExactSynonym", - "val" : "semi upright", + "val" : "squashed", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "compressed", "xrefs" : [ ] } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-09-08T03:27:21Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001840" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0002452" } ] }, "type" : "CLASS", - "lbl" : "semi erect" + "lbl" : "condensed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000082", + "id" : "http://purl.obolibrary.org/obo/PATO_0045022", "meta" : { "definition" : { - "val" : "A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm.", - "xrefs" : [ "reference.com:reference.com" ] + "val" : "A fluid flow which is relatively normal or average.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "persistence" + "lbl" : "normal fluid flow" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000081", + "id" : "http://purl.obolibrary.org/obo/PATO_0045023", "meta" : { + "definition" : { + "val" : "A fluorescence which is relatively normal or average.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0001309" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" } ] }, - "type" : "CLASS" + "type" : "CLASS", + "lbl" : "normal fluorescence" }, { - "id" : "http://purl.obolibrary.org/obo/GO_0005102", + "id" : "http://purl.obolibrary.org/obo/PATO_0045024", "meta" : { "definition" : { - "val" : "Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.", - "xrefs" : [ "GOC:bf", "GOC:ceb", "ISBN:0198506732" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_chembl", "http://purl.obolibrary.org/obo/go#goslim_agr", "http://purl.obolibrary.org/obo/go#goslim_mouse", "http://purl.obolibrary.org/obo/go#goslim_plant", "http://purl.obolibrary.org/obo/go#goslim_flybase_ribbon" ], - "xrefs" : [ { - "val" : "Wikipedia:Ligand_(biochemistry)" - } ], - "synonyms" : [ { - "pred" : "hasNarrowSynonym", - "val" : "receptor ligand", - "xrefs" : [ ] - }, { - "pred" : "hasBroadSynonym", - "val" : "receptor binding", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "receptor-associated protein activity", + "val" : "A force which is relatively normal or average.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "molecular_function" + "val" : "quality" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Where appropriate, also consider annotating to 'receptor agonist activity ; GO:0048018'." + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-22T14:16:43Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "signaling receptor binding" + "lbl" : "normal force" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002274", + "id" : "http://purl.obolibrary.org/obo/PATO_0045025", "meta" : { "definition" : { - "val" : "Multicolored quality inhering in a bearer by virtue of the bearer's being dappled with spots, patches, or blotches of different colors.", - "xrefs" : [ "url:http://www.oed.com/" ] + "val" : "A fragility which is relatively normal or average.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "Luke Slater" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-11-16T11:22:57Z" + "val" : "2017-12-22T14:16:43Z" } ] }, "type" : "CLASS", - "lbl" : "mottled" + "lbl" : "normal fragility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000095", + "id" : "http://purl.obolibrary.org/obo/PATO_0045020", "meta" : { + "definition" : { + "val" : "A fertility which is relatively normal or average.", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - 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"val" : "2010-11-16T11:24:15Z" + "val" : "2017-12-22T14:16:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "high contrast color pattern" + "lbl" : "normal flexibility" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000094", + "id" : "http://purl.obolibrary.org/obo/PATO_0001419", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" } ] }, "type" : "CLASS", - 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"val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located at the same continuous distance relative to another object.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A physical quality inhering in a catalyst by virtue of the amount of the catalyst's action.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-10-26T02:07:42Z" } ] }, "type" : "CLASS", - "lbl" : "parallel to" + "lbl" : "catalytic activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002273", + "id" : "http://purl.obolibrary.org/obo/PATO_0001411", "meta" : { "definition" : { - "val" : "Multicolored quality inhering in a bearer by virtue of the bearer's being colored with a variegated pattern resembling marble,.", - "xrefs" : [ "url:http://www.oed.com/" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's having distinct structure.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-11-16T11:17:32Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001412" } ] }, "type" : "CLASS", - "lbl" : "marbled" + "lbl" : "structured" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000096", + "id" : "http://purl.obolibrary.org/obo/PATO_0001412", "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - 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"pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-01-20T05:39:18Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0001416" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "articulated with" + "lbl" : "irregular duration" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000099", + "id" : "http://purl.obolibrary.org/obo/PATO_0001418", "meta" : { + "definition" : { + "val" : "A behavioral quality inhering in a bearer by virtue of the bearer's being deficient in alertness or activity.", + "xrefs" : [ "WordNet:WordNet" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - 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"xrefs" : [ "PATOC:WD" ] + "val" : "Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.", + "xrefs" : [ "GOC:go_curators", "GOC:isa_complete" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/go#goslim_plant" ], + "synonyms" : [ { + "pred" : "hasNarrowSynonym", + "val" : "cell growth and/or maintenance", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "cellular physiological process", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "cell physiology", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "single-organism cellular process", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0044763" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0008151" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-01-20T05:40:29Z" + "val" : "2012-12-11T16:56:55Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0050875" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "janelomax" } ] }, "type" : "CLASS", - "lbl" : "broadly articulated with" + "lbl" : "cellular process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002296", + "id" : "http://purl.obolibrary.org/obo/PATO_0045000", "meta" : { "definition" : { - "val" : "A texture quality inhering in a surface by virtue of the bearer's being marked by the presence of small, shallow, regular depressions called fovae.", - "xrefs" : [ "Book:Book" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "foveolate", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "pitted", + "val" : "A rate which is relatively normal.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-05-17T07:59:30Z" } ] }, "type" : "CLASS", - "lbl" : "foveate" + "lbl" : "normal rate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002297", + "id" : "http://purl.obolibrary.org/obo/PATO_0045001", "meta" : { "definition" : { - "val" : "A cellular motility which is lower relative to the normal or average.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A quality of an object that has a value that is normal or average.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2017-12-21T14:11:01Z" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002298" + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "decreased cellular motility" + "lbl" : "normal object quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002294", + "id" : "http://purl.obolibrary.org/obo/PATO_0045002", "meta" : { "definition" : { - "val" : "A texture that is uniformly covered in short, oblong, or trench-like depressions.", - "xrefs" : [ "Book:Book" ] + "val" : "An acidity which is relatively normal.", + "xrefs" : [ ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-05-03T03:12:47Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "scrobiculate" + "lbl" : "normal acidity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002295", + "id" : "http://purl.obolibrary.org/obo/PATO_0045003", "meta" : { "definition" : { - "val" : "A surface feature shape inhering in a surface by virtue of the bearer's being divided by ridge-like structures into a number of small, irregular spaces.", - "xrefs" : [ "Book:Book" ] + "val" : "A adhesivity which is relatively normal or average.", + "xrefs" : [ ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -53153,542 +53230,417 @@ "val" : "quality" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-05-17T07:57:45Z" + "val" : "2017-12-22T14:16:43Z" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "val" : "Luke Slater" } ] }, "type" : "CLASS", - "lbl" : "areolate" + "lbl" : "normal adhesivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002298", + "id" : "http://purl.obolibrary.org/obo/PATO_0001435", "meta" : { "definition" : { - "val" : "A cellular motility which is higher relative to the normal or average.", + "val" : "A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002297" } ] }, "type" : "CLASS", - "lbl" : "increased cellular motility" + "lbl" : "attachment quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002299", + "id" : "http://purl.obolibrary.org/obo/PATO_0000103", "meta" : { - "definition" : { - "val" : "A cylindrical shape that is hollow.", - "xrefs" : [ "PATOC:GVG" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "tube-shaped", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "tubulate", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "tube like", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-06-08T06:33:50Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "tubular" + "lbl" : "obsolete micronutrient sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000066", + "id" : "http://purl.obolibrary.org/obo/PATO_0001436", "meta" : { "definition" : { - "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", - "xrefs" : [ ] + "val" : "An attachment quality inhering in a flower by virtue of the bearer's lacking a stalk, as in flowers or leaves that grow directly from the stem.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sessility_(botany)" ] }, - "xrefs" : [ { - "val" : "BFO:0000066" - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "occurs_in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "occurs in" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", - "val" : "occurs_in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "unfolds_in" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "unfolds in" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "external" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", - "val" : "http://purl.obolibrary.org/obo/bfo.owl" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" + "val" : "quality" } ] }, - "type" : "PROPERTY", - "lbl" : "occurs in" + "type" : "CLASS", + "lbl" : "sessile (sensu botany)" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "id" : "http://purl.obolibrary.org/obo/RO_0002595", "meta" : { "definition" : { - "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "val" : "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.", "xrefs" : [ ] }, "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", - "val" : "http://purl.obolibrary.org/obo/bfo.owl" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "site of" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." } ] }, "type" : "PROPERTY", - "lbl" : "contains process" + "lbl" : "causal relation between material entity and a process" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000062", + "id" : "http://purl.obolibrary.org/obo/PATO_0000102", "meta" : { - "definition" : { - "val" : "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "is preceded by" - }, { - "pred" : "http://purl.org/dc/elements/1.1/source", - "val" : "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "preceded by" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", - "val" : "preceded_by" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, - "type" : "PROPERTY", - "lbl" : "preceded by" + "type" : "CLASS", + "lbl" : "obsolete macronutrient sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002292", + "id" : "http://purl.obolibrary.org/obo/PATO_0000105", "meta" : { - "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's underlying structure being capable of change.", - "xrefs" : [ "PATOC:WD" ] - }, - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "transient structure", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-05-03T03:01:59Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "For example, structures undergoing endochondral ossification change in composition from cartilaginous to ossified." } ] }, "type" : "CLASS", - "lbl" : "transient" + "lbl" : "obsolete p h sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002293", + "id" : "http://purl.obolibrary.org/obo/PATO_0001433", "meta" : { "definition" : { - "val" : "A structural quality inhering in a bearer by virtue of the bearer's underlying structure not changing over time.", - "xrefs" : [ "PATOC:WD" ] + "val" : "A quality of a single process which describes the growth of an organism, structure, or group of organisms.", + "xrefs" : [ "PATOC:MAH" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "permanent structure", + "pred" : "hasRelatedSynonym", + "val" : "growth quality of a process", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "growth timing quality", "xrefs" : [ ] } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-05-03T03:03:50Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001489" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "permanent" + "lbl" : "growth quality of occurrent" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000063", + "id" : "http://purl.obolibrary.org/obo/RO_0002596", "meta" : { "definition" : { - "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.", + "val" : "Holds between c and p if and only if c is capable of some activity a, and a regulates p.", "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", - "val" : "precedes" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "pyrethroid -> growth" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, "type" : "PROPERTY", - "lbl" : "precedes" + "lbl" : "capable of regulating" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002290", + "id" : "http://purl.obolibrary.org/obo/PATO_0001434", "meta" : { + "definition" : { + "val" : "An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring.", + "xrefs" : [ "WordNet:WordNet" ] + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-04-18T05:11:33Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" } ] }, "type" : "CLASS", - "lbl" : "aplastic/hypoplastic" + "lbl" : "reproductive quality" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002291", + "id" : "http://purl.obolibrary.org/obo/PATO_0000104", "meta" : { - "definition" : { - "val" : "Absence of a tissue or organ due to failure to develop.", - "xrefs" : [ "PATO:GVG" ] - }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "George Gkoutos" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2011-04-18T05:17:34Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "agenesis" - }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000019", - "type" : "CLASS", - "lbl" : "quality" + "lbl" : "obsolete osmotic response sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000015", + "id" : "http://purl.obolibrary.org/obo/RO_0002597", "meta" : { "definition" : { - "val" : "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.", + "val" : "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.", "xrefs" : [ ] - } + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + } ] }, - "type" : "CLASS", - "lbl" : "process" + "type" : "PROPERTY", + "lbl" : "capable of negatively regulating" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000048", + "id" : "http://purl.obolibrary.org/obo/PATO_0001439", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's resistance to pressure, being broken, or pierced", - "xrefs" : [ "merriam-webster:merriam-webster" ] + "val" : "A contractile quality inhering in a bearer by virtue of the bearer's elastic tension that facilitate response to stimuli.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "toughness", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "impenetrability", + "pred" : "hasExactSynonym", + "val" : "tone", "xrefs" : [ ] } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "TODO: we need a clearer differentium between this and contractility - or merge?" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001498" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "hardness" + "lbl" : "tonicity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002227", + "id" : "http://purl.obolibrary.org/obo/PATO_0000107", "meta" : { - "definition" : { - "val" : "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape form resembling the shape of a cup.", - "xrefs" : [ "url:http://www.thefreedictionary.com/cup-shaped" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "cup-like", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-13T04:29:32Z" } ] }, "type" : "CLASS", - "lbl" : "cup-shaped" + "lbl" : "obsolete alkali sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002228", + "id" : "http://purl.obolibrary.org/obo/PATO_0000106", "meta" : { - "definition" : { - "val" : "A tapered shape quality inhering in a bearer by virtue of the bearer's tapering gradually to a sharp point.", - "xrefs" : [ "url:http://www.thefreedictionary.com/acuminate" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-15T09:03:18Z" } ] }, "type" : "CLASS", - "lbl" : "acuminate" + "lbl" : "obsolete acid sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000047", + "id" : "http://purl.obolibrary.org/obo/PATO_0001437", "meta" : { "definition" : { - "val" : "An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.", - "xrefs" : [ "MGED:MGED" ] + "val" : "A attachment quality inhering in a bearer by virtue of the bearer's inability to move about.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Sessile_(zoology)" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "biological sex" + "lbl" : "sessile (sensu zoology)" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001378", + "id" : "http://purl.obolibrary.org/obo/PATO_0000109", "meta" : { - "definition" : { - "val" : "A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from a single species.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Autopolyploid" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "autopolyploid" + "lbl" : "obsolete water sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002225", + "id" : "http://purl.obolibrary.org/obo/PATO_0001438", "meta" : { "definition" : { - "val" : "An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter L.", - "xrefs" : [ "PATOC:JE" ] + "val" : "A attachment quality inhering in a bearer by virtue of the bearer's having or being supported by a pedicel or pedicle.", + "xrefs" : [ "MedTerms:MedTerms" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-13T04:14:59Z" } ] }, "type" : "CLASS", - "lbl" : "L-shaped" + "lbl" : "pedicellate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002226", + "id" : "http://purl.obolibrary.org/obo/PATO_0000108", "meta" : { - "definition" : { - "val" : "A cylindrical shape quality inhering in a bearer by virtue of the bearer's being imperfectly cylindrical or approximately cylindrical.", - "xrefs" : [ "url:http://www.thefreedictionary.com/Subcylindrical" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-13T04:22:30Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "subcylindrical" + "lbl" : "obsolete salt sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000049", + "id" : "http://purl.obolibrary.org/obo/PATO_0001431", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's possessing or displaying a distinctive feature in type or degree or effect or force.", + "val" : "An emergent molecular quality that arises by virtue of the bearer's disposition to exhibit molecular attraction to another entity in contact.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "stickiness", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "adhesiveness", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "The definition is general enough to cover adhesion arising from different kinds of chemical bonding/forces, although for PATO this term will most commonly used for cellular adhesion. See also GO:0031589 \"cell-substrate adhesion\"." } ] }, "type" : "CLASS", - "lbl" : "intensity" + "lbl" : "adhesivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001379", + "id" : "http://purl.obolibrary.org/obo/PATO_0001432", "meta" : { "definition" : { - "val" : "A polyploidy quality inhering in a bearer by virtue of the bearer's containing chromosomes derived from different species.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Allopolyploidy" ] + "val" : "A quality inhering in a bearer by virtue of the bearer's decomposition into component parts.", + "xrefs" : [ "Medical-dictionary:Medical-dictionary" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "allopolyploidy" + "lbl" : "decayed" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002229", + "id" : "http://purl.obolibrary.org/obo/PATO_0000101", "meta" : { - "definition" : { - "val" : "A quadrangular shape quality inhering in a bearer by virtue of the bearer's being approximately rectangular.", - "xrefs" : [ "url:http://dictionary.reference.com/browse/subrectangular?qsrc=2446&o=100074" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-19T12:18:57Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "subrectangular" + "lbl" : "obsolete soil nutrient sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001372", + "id" : "http://purl.obolibrary.org/obo/PATO_0001430", "meta" : { "definition" : { - "val" : "A physical quality that inheres in propagating wave (light or sound) virtue of the bearer's change in direction when passing from one medium to another.", - "xrefs" : [ "WordNet:WordNet" ] + "val" : "An medium acidity quality inhering in a solution by virtue of the bearer's a low concentration of H+ ions.", + "xrefs" : [ "chemicool:chemicool" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "refractivity" + "lbl" : "alkaline" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000040", + "id" : "http://purl.obolibrary.org/obo/PATO_0000100", "meta" : { - "definition" : { - "val" : "A quality that is the extent of space between two entities.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "distance" + "lbl" : "obsolete soil composition sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001373", + "id" : "http://purl.obolibrary.org/obo/GO_0030545", "meta" : { "definition" : { - "val" : "A reflectivity quality inhering in a bearer by virtue of the bearer's reflecting lots of light.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is changed.", + "xrefs" : [ "GOC:ceb" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "glossy", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "shiny", - "xrefs" : [ ] + "xrefs" : [ { + "val" : "MIPS_funcat:18.02.07" } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "molecular_function" } ] }, "type" : "CLASS", - "lbl" : "glistening" + "lbl" : "receptor regulator activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002220", + "id" : "http://purl.obolibrary.org/obo/GO_0030546", "meta" : { "definition" : { - "val" : "A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group.", - "xrefs" : [ "wikipedia:en.wikipedia.org/wiki/Phosphorylated" ] + "val" : "The function of interacting (directly or indirectly) with receptors such that the proportion of receptors in the active form is increased.", + "xrefs" : [ "GOC:ceb" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasBroadSynonym", + "val" : "receptor activator activity", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002263" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-09T01:50:14Z" + "val" : "molecular_function" } ] }, "type" : "CLASS", - "lbl" : "phosphorylated" + "lbl" : "signaling receptor activator activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000042", + "id" : "http://purl.obolibrary.org/obo/PATO_0000114", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -53699,13 +53651,13 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative distance" + "lbl" : "obsolete temperature sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001370", + "id" : "http://purl.obolibrary.org/obo/PATO_0001446", "meta" : { "definition" : { - "val" : "A coating quality which is sticky or clammy.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A wholeness quality inhering in a bearer by virtue of the bearer's including all its components.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { @@ -53714,35 +53666,22 @@ } ] }, "type" : "CLASS", - "lbl" : "viscid" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000041", - "meta" : { - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - } ] - }, - "type" : "CLASS", - "lbl" : "obsolete absolutedistance" + "lbl" : "whole" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001371", + "id" : "http://purl.obolibrary.org/obo/PATO_0001447", "meta" : { "definition" : { - "val" : "A composition quality inhering in an bearer by virtue of the bearer's consistency of mucus.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A composition quality inhering in an bearer by virtue of the bearer's being encrusted or impregnated with calcium carbonate (CHEBI:3311).", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "mucous", + "pred" : "hasExactSynonym", + "val" : "calcareous", "xrefs" : [ ] }, { - "pred" : "hasRelatedSynonym", - "val" : "mucinous", + "pred" : "hasNarrowSynonym", + "val" : "calcification", "xrefs" : [ ] } ], "basicPropertyValues" : [ { @@ -53751,221 +53690,245 @@ } ] }, "type" : "CLASS", - "lbl" : "mucoid" + "lbl" : "calcified" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001376", + "id" : "http://purl.obolibrary.org/obo/PATO_0000113", "meta" : { - "definition" : { - "val" : "A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of unique homologous chromosomes.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Monoploid" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "monoploid" + "lbl" : "obsolete radiation sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000044", + "id" : "http://purl.obolibrary.org/obo/RO_0002584", "meta" : { "definition" : { - "val" : "A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/frequency" ] + "val" : "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" } ] }, - "type" : "CLASS", - "lbl" : "frequency" + "type" : "PROPERTY", + "lbl" : "has part structure that is capable of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002223", + "id" : "http://purl.obolibrary.org/obo/PATO_0001444", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's having reacted with oxygen, or been modified by oxidation (the reaction in which the atoms of an element lose electrons and the valence of the element increases).", - "xrefs" : [ "Wikipedia:http://en.wiktionary.org/wiki/oxidized" ] + "val" : "A broken quality inhering in a bearer by virtue of the bearer's being broken open.", + "xrefs" : [ "PATOC:GVG" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "ruptured", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "cracked", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "fragmented", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "split", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "hemorrhaged", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "fractured", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "burst", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "torn", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001820" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - 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"xrefs" : [ "Wikipedia:http://en.wiktionary.org/wiki/hyperphosphorylated" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "hyperphosphorylated", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002222" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-09T01:51:52Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased phosphorylation" + "lbl" : "obsolete absolute size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001374", + "id" : "http://purl.obolibrary.org/obo/PATO_0000117", "meta" : { "definition" : { - "val" : "A cellular quality inhering in a bearer by virtue of the bearer's number of homologous sets of chromosomes in the nucleus or primary chromosome-containing compartment of the cell, each set essentially coding for all the biological traits of the organism.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Ploidy" ] + "val" : "A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.", + "xrefs" : [ "WordNet:WordNet" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "ploidy" + "lbl" : "size" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000046", + "id" : "http://purl.obolibrary.org/obo/RO_0002581", + "meta" : { + "definition" : { + "val" : "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL", + "xrefs" : [ ] + } + }, + "type" : "PROPERTY", + "lbl" : "is a defining property chain axiom" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001448", "meta" : { + "definition" : { + "val" : "A composition quality inhering in an bearer by virtue of the bearer's being hardened by the deposition of calcium into bone.", + "xrefs" : [ "MAMMALOGY:MAMMALOGY" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative frequency" + "lbl" : "ossified" }, { - "id" : "http://purl.obolibrary.org/obo/pato#mpath_slim", + "id" : "http://purl.obolibrary.org/obo/PATO_0001449", "meta" : { + "definition" : { + "val" : "A composition quality inhering in an bearer by virtue of the bearer's cartilage quantities.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Cartilaginous" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Pathology slim" + "val" : "Cartilage is a type of dense connective tissue. It is composed of specialized cells called chondrocytes (CL:0000138) that produce a large amount of extracellular matrix composed of collagen fibers, abundant ground substance rich in proteoglycan, and elastin fibers." } ] }, - "type" : "PROPERTY" + "type" : "CLASS", + "lbl" : "cartilaginous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001375", + "id" : "http://purl.obolibrary.org/obo/PATO_0000119", "meta" : { "definition" : { - "val" : "A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of homologous chromosomes.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Haploid" ] + "val" : "A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "haploid" + "lbl" : "height" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002222", + "id" : "http://purl.obolibrary.org/obo/RO_0002582", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully.", - "xrefs" : [ "Wikipedia:http://en.wiktionary.org/wiki/hypophosphorylated" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "hypophosporylated", + "val" : "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.", "xrefs" : [ ] - } ], + } + }, + "type" : "PROPERTY", + "lbl" : "is a defining property chain axiom where second argument is reflexive" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0001442", + "meta" : { + "definition" : { + "val" : "A structural quality inhering in a bearer by virtue of whether the bearer includes all its components.", + "xrefs" : [ "thefreedictionary.com:thefreedictionary.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-09T01:54:22Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002221" } ] }, "type" : "CLASS", - "lbl" : "decreased phosphorylation" + "lbl" : "wholeness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000045", + "id" : "http://purl.obolibrary.org/obo/PATO_0000110", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -53976,867 +53939,833 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute frequency" + "lbl" : "obsolete drought sensitivity" }, { - "id" : "http://purl.obolibrary.org/obo/BFO_0000004", + "id" : "http://purl.obolibrary.org/obo/RO_0002577", "meta" : { "definition" : { - "val" : "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.", + "val" : "A material entity consisting of multiple components that are causally integrated.", "xrefs" : [ ] - } + }, + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.jbiomedsem.com/content/4/1/43" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] }, "type" : "CLASS", - "lbl" : "independent continuant" + "lbl" : "system" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000059", + "id" : "http://purl.obolibrary.org/obo/PATO_0001443", "meta" : { - "definition" : { - "val" : "A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a parent.", - "xrefs" : [ "WordNet:WordNet" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "parental type", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001444" + }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" } ] }, - "type" : "CLASS", - "lbl" : "obsolete parental quality" + "type" : "CLASS" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002238", + "id" : "http://purl.obolibrary.org/obo/RO_0002578", "meta" : { "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved forward or upward.", - "xrefs" : [ "url:http://www.thefreedictionary.com/antrorse" ] + "val" : "Process(P1) directly regulates process(P2) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "directly regulates (processual)" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-23T02:22:56Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002575", + "val" : "http://purl.obolibrary.org/obo/RO_0002211" } ] }, - 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"id" : "http://purl.obolibrary.org/obo/PATO_0001389", + "id" : "http://purl.obolibrary.org/obo/PATO_0001441", "meta" : { "definition" : { - "val" : "An aneuploidy quality inhering in a bearer by virtue of the bearer's containing three, instead of two, chromosomes of a particular numbered type in an organism.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Trisomy" ] + "val" : "A cellular adhesivity quality inhering in a molecule in one cell by virtue of the bearer's attachment to an nonidentical molecule in an adjacent cell.", + "xrefs" : [ "GO:GO" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "trisomy" + "lbl" : "heterophilic" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002237", + "id" : "http://purl.obolibrary.org/obo/GO_0009966", "meta" : { "definition" : { - "val" : "A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or downward.", - "xrefs" : [ "url:http://www.thefreedictionary.com/retrorse" ] + "val" : "Any process that modulates the frequency, rate or extent of signal transduction.", + "xrefs" : [ "GOC:sm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "regulation of signalling pathway", + "xrefs" : [ "GOC:mah" ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "hasRelatedSynonym", + "val" : "regulation of signaling pathway", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0035466" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-23T02:22:09Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "retrorse" + "lbl" : "regulation of signal transduction" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001383", + "id" : "http://purl.obolibrary.org/obo/GO_0009967", "meta" : { "definition" : { - "val" : "A polyploidy quality inhering in a bearer by virtue of the bearer's containing five homologous sets of chromosomes.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Pentaploid" ] + "val" : "Any process that activates or increases the frequency, rate or extent of signal transduction.", + "xrefs" : [ "GOC:sm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "up regulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "positive regulation of signalling pathway", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasExactSynonym", + "val" : "upregulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "activation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "stimulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up-regulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "positive regulation of signaling pathway", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0035468" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "pentaploid" + "lbl" : "positive regulation of signal transduction" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002230", + "id" : "http://purl.obolibrary.org/obo/GO_0009968", "meta" : { "definition" : { - "val" : "A triangular shape quality inhering in a bearer by virtue of the bearer's being nearly, but not perfectly, triangular.", - "xrefs" : [ "url:http://www.thefreedictionary.com/Subtriangular" ] + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction.", + "xrefs" : [ "GOC:sm" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "down-regulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "down regulation of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "negative regulation of signalling pathway", + "xrefs" : [ "GOC:mah" ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of signal transduction", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "negative regulation of signaling pathway", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "downregulation of signal transduction", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-19T12:20:59Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0035467" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "subtriangular" + "lbl" : "negative regulation of signal transduction" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000051", + "id" : "http://purl.obolibrary.org/obo/IAO_0000228", "meta" : { - "definition" : { - "val" : "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use." } ] }, - "type" : "CLASS", - "lbl" : "morphology" + "type" : "INDIVIDUAL", + "lbl" : "term imported" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000050", + "id" : "http://purl.obolibrary.org/obo/IAO_0000229", "meta" : { - "definition" : { - "val" : "A time quality inhering in a bearer by virtue of the bearer's expected maximum age.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created." } ] }, - "type" : "CLASS", - "lbl" : "life span" + "type" : "INDIVIDUAL", + "lbl" : "term split" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002231", + "id" : "http://purl.obolibrary.org/obo/RO_0002575", "meta" : { "definition" : { - "val" : "A split shape quality inhering in a bearer by virtue of the bearer's having or being divided into many lobes or similar segments.", - "xrefs" : [ "url:http://www.thefreedictionary.com/multifid" ] + "val" : "relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The general property hierarchy is:\n\n \"directly P\" SubPropertyOf \"P\"\n Transitive(P)\n\nWhere we have an annotation assertion\n\n \"directly P\" \"is direct form of\" \"P\"" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-19T12:23:02Z" + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.org/dc/terms/creator", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002423", + "val" : "If we have the annotation P is-direct-form-of Q, and we have inverses P' and Q', then it follows that P' is-direct-form-of Q'" } ] }, - "type" : "CLASS", - "lbl" : "multifid" + "type" : "PROPERTY", + "lbl" : "is direct form of" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001384", + "id" : "http://purl.obolibrary.org/obo/RO_0040042", "meta" : { "definition" : { - "val" : "A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Hexaploid" ] + "val" : "R is homemorphic for C iff (1) there exists some x,y such that x R y, and x and y instantiate C and (2) for all x, if x is an instance of C, and there exists some y some such that x R y, then it follows that y is an instance of C.", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "part-of is homeomorphic for independent continuants." + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "https://github.com/oborel/obo-relations/issues/164" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val" : "2018-10-21T19:46:34Z" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", + "val" : "cjm" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "R homeomorphic-for C expands to: C SubClassOf R only C. Additionally, for any class D that is disjoint with C, we can also expand to C DisjointWith R some D, D DisjointWith R some C." } ] }, - "type" : "CLASS", - "lbl" : "hexaploid" + "type" : "PROPERTY", + "lbl" : "is homeomorphic for" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001381", + "id" : "http://purl.obolibrary.org/obo/RO_0002566", "meta" : { "definition" : { - "val" : "A polyploidy quality inhering in a bearer by virtue of the bearer's containing three homologous sets of chromosomes.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Triploid" ] + "val" : "Holds between materal entities a and b if the activity of a is causally upstream of the activity of b, or causally upstream of a an activity that modifies b", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influences (material entity to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "triploid" + "type" : "PROPERTY", + "lbl" : "causally influences" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000053", + "id" : "http://purl.obolibrary.org/obo/IAO_0000231", "meta" : { + "definition" : { + "val" : "Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification.", + "xrefs" : [ ] + }, "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Melanie Courtot" }, { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has obsolescence reason" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000070" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" } ] }, - "type" : "CLASS" + "type" : "PROPERTY", + "lbl" : "has obsolescence reason" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000052", + "id" : "http://purl.obolibrary.org/obo/IAO_0000232", "meta" : { "definition" : { - "val" : "A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "relational shape quality", + "val" : "An administrative note of use for a curator but of no use for a user", "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "IAO:0000232" } ], "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "curator_notes" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "PERSON:Alan Ruttenberg" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "val" : "uberon" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001647" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "curator note" }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects." + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_metadata_tag", + "val" : "true" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", + "val" : "http://purl.obolibrary.org/obo/IAO_0000122" } ] }, - "type" : "CLASS", - "lbl" : "shape" + "type" : "PROPERTY", + "lbl" : "curator notes" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001382", + "id" : "http://purl.obolibrary.org/obo/RO_0002563", "meta" : { - "definition" : { - "val" : "A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Tetraploid" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://xmlns.com/foaf/0.1/page", + "val" : "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" } ] }, - "type" : "CLASS", - "lbl" : "tetraploid" + "type" : "PROPERTY", + "lbl" : "interaction relation helper property" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002234", + "id" : "http://purl.obolibrary.org/obo/RO_0002564", "meta" : { - "definition" : { - "val" : "A notched shape quality inhering in a bearer by virtue of the bearer's having a notched tip or edge.", - "xrefs" : [ "url:http://www.thefreedictionary.com/emarginate" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-19T04:25:58Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "molecular interaction relation helper property" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002559", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "causally influenced by (material entity to material entity)" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, - "type" : "CLASS", - "lbl" : "emarginate" + "type" : "PROPERTY", + "lbl" : "causally influenced by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001387", + "id" : "http://purl.obolibrary.org/obo/PATO_0001408", "meta" : { "definition" : { - "val" : "An aneuploidy quality inhering in a bearer by virtue of the bearer's containing only two chromosome from a pair in a cell's nucleus.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Disomy" ] + "val" : "A cellular quality inhering in a bearer by virtue of the bearer's having thin, tail-like projections extending outwards from the cell body.", + "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Ciliated" ] }, "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "For diploid organisms, such as humans, it is the normal condition, whilst for organisms that are normally triploid or above, disomy is an aneuploidy." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "disomy" + "lbl" : "ciliatedness" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000055", + "id" : "http://purl.obolibrary.org/obo/PATO_0001409", "meta" : { + "definition" : { + "val" : "A shape quality inhering in a bearer by virtue of the bearer's resembling a long tapered rod.", + "xrefs" : [ "Biology-online:Biology-online" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - 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"xrefs" : [ "url:http://www.thefreedictionary.com/trilobed" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-28T12:57:46Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "trilobed" + "lbl" : "obsolete absolute opacity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001394", + "id" : "http://purl.obolibrary.org/obo/PATO_0000965", "meta" : { "definition" : { - "val" : "A ploidy quality inhering in a bearer by virtue of the bearer's having two copies (homologs) of each chromosome, usually one from the mother and one from the father.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Diploid" ] + "val" : "A pattern quality of inhering in a bearer by virtue of the correspondence in size, shape, and relative position of the bearer's parts on opposite sides of a dividing line or median plane or about a center or axis.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "The exact number may be one or two different from the 2n number and still be classified as diploidy (although with aneuploidy). Nearly all mammals are diploid organisms, although all individuals have some small fracton of cells that are polyploidy." - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "diploid" + "lbl" : "symmetry" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000061", + "id" : "http://purl.obolibrary.org/obo/PATO_0000964", "meta" : { + "definition" : { + "val" : "A optical quality inhering in a bearer by virtue of the bearer's lacking opacity.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#mpath_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "clear", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "hyaline", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000963" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative pattern" + "lbl" : "transparent" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002242", + "id" : "http://purl.obolibrary.org/obo/PATO_0000967", "meta" : { "definition" : { - "val" : "A physical quality inhering in a bearer by virtue of the bearer's rate of change of the position.", - "xrefs" : [ "url:http://en.wikipedia.org/wiki/Velocity" ] + "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a sinuate margin and rippled surface.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "wavy", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "waved", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "rippled", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "undulated", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "undulating", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "sinuate", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-28T02:52:48Z" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001610" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001939" } ] }, "type" : "CLASS", - "lbl" : "velocity" + "lbl" : "undulate" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001395", + "id" : "http://purl.obolibrary.org/obo/PATO_0000966", "meta" : { - "definition" : { - "val" : "A diploidy quality inhering in a bearer in by virtue of belonging in a species whose one of the sexes has haploid cells and the other has diploid cells.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Haplodiploid" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#cell_quality", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "haplodiploid" + "lbl" : "obsolete symmetry value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000064", + "id" : "http://www.geneontology.org/formats/oboInOwl#inSubset", + "type" : "PROPERTY", + "lbl" : "in_subset" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000979", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -54847,304 +54776,277 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete absolute percentage" + "lbl" : "obsolete porosity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001392", + "id" : "http://purl.obolibrary.org/obo/PATO_0000972", "meta" : { - "definition" : { - "val" : "A polyploidy quality inhering in a bearer by virtue of the bearer's chromosome number being increased by endomitosis and for which the degree of ploidy is proportional to the number of times that endomitosis has taken place.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Endopolyploid" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "endopolyploid" + "lbl" : "obsolete relative permeability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000063", + "id" : "http://purl.obolibrary.org/obo/PATO_0000971", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "obsolete percentage" + "lbl" : "obsolete absolute permeability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002240", + "id" : "http://purl.obolibrary.org/obo/PATO_0000974", "meta" : { - "definition" : { - "val" : "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop.", - "xrefs" : [ "url:wordnetweb.princeton.edu/perl/webwn" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "drop shaped", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-23T02:31:11Z" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" } ] }, "type" : "CLASS", - "lbl" : "teardrop-shaped" + "lbl" : "obsolete relative porosity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001393", + "id" : "http://purl.obolibrary.org/obo/PATO_0000973", "meta" : { "definition" : { - "val" : "A ploidy quality inhering in a bearer by virtue of the bearer's containing an integral multiple of the monoploid number, possibly excluding the sex-determining chromosomes.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Euploid" ] + "val" : "A permeability quality inhering in a bearer by virtue of the bearer's disposition to admit the passage of gas or liquid through pores or interstices.", + "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "euploid" + "lbl" : "porosity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000066", + "id" : "http://purl.obolibrary.org/obo/PATO_0000976", "meta" : { - "definition" : { - "val" : "A texture quality inhering in a bearer by virtue of the bearer's having hair or bristles.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "pilosity" + "lbl" : "obsolete permeability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002245", + "id" : "http://purl.obolibrary.org/obo/PATO_0000975", "meta" : { - "definition" : { - "val" : "A force which relative high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "increased force amplitude", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-08-04T11:12:20Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002246" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "increased force" + "lbl" : "obsolete absolute porosity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001398", + "id" : "http://purl.obolibrary.org/obo/PATO_0000978", "meta" : { - "definition" : { - "val" : "A cellular quality inhering in a bearer by virtue of the bearer's having the ability to go through numerous cycles of cell division while maintaining the undifferentiated state.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "self-renewal" + "lbl" : "obsolete relative permeability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000065", + "id" : "http://purl.obolibrary.org/obo/PATO_0000977", "meta" : { "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { "pred" : "http://www.w3.org/2002/07/owl#deprecated", "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "obsolete relative percentage" + "lbl" : "obsolete absolute permeability value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001399", + "id" : "http://purl.obolibrary.org/obo/PATO_0000970", "meta" : { "definition" : { - "val" : "A cellular potency that is the capacity to produce differentiated cell types of all three primary germ layers and extraembryonic cell types.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Totipotent" ] + "val" : "A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion).", + "xrefs" : [ "Biology-online:Biology-online" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "totipotent" + "lbl" : "permeability" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002246", + "id" : "http://purl.obolibrary.org/obo/GO_0033674", "meta" : { "definition" : { - "val" : "A force which is relative low.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.", + "xrefs" : [ "GOC:mah" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "decreased force amplitude", + "val" : "upregulation of kinase activity", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-08-04T11:13:13Z" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "hasNarrowSynonym", + "val" : "kinase activator", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "hasNarrowSynonym", + "val" : "stimulation of kinase activity", + "xrefs" : [ ] }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002245" + "pred" : "hasExactSynonym", + "val" : "up-regulation of kinase activity", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "up regulation of kinase activity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "decreased force" + "lbl" : "positive regulation of kinase activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002243", + "id" : "http://purl.obolibrary.org/obo/GO_0033673", "meta" : { "definition" : { - "val" : "A physical quality inhering in a fluid (liquid or gas) by virtue of the amount of fluid which passes through a given surface per unit time.", - "xrefs" : [ "url:http://en.wikipedia.org/wiki/Volumetric_flow_rate" ] + "val" : "Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.", + "xrefs" : [ "GOC:mah" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#scalar_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], "synonyms" : [ { "pred" : "hasExactSynonym", - "val" : "volumetric flow rate", + "val" : "down regulation of kinase activity", "xrefs" : [ ] }, { "pred" : "hasExactSynonym", - "val" : "volume flow rate", + "val" : "downregulation of kinase activity", "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-28T03:00:20Z" + "pred" : "hasExactSynonym", + "val" : "down-regulation of kinase activity", + "xrefs" : [ ] }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - } ] - }, - "type" : "CLASS", - "lbl" : "fluid flow rate" - }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000068", - "meta" : { + "pred" : "hasNarrowSynonym", + "val" : "inhibition of kinase activity", + "xrefs" : [ ] + }, { + "pred" : "hasNarrowSynonym", + "val" : "kinase inhibitor", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "TODO: define this or obsolete it and move children somewhere else." + "val" : "biological_process" } ] }, "type" : "CLASS", - "lbl" : "qualitative" + "lbl" : "negative regulation of kinase activity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001396", + "id" : "http://purl.obolibrary.org/obo/PATO_0000983", "meta" : { "definition" : { - "val" : "A monadic quality of continuant that exists at the cellular level of organisation.", - "xrefs" : [ "PATOC:GVG" ] + "val" : "A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a gas or liquid (as by osmosis or diffusion).", + "xrefs" : [ "Biology-online:Biology-online" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000982" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "cellular quality" + "lbl" : "impermeable" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002244", + "id" : "http://purl.obolibrary.org/obo/PATO_0000982", "meta" : { "definition" : { - "val" : "A flow rate quality inhering in a substance by virtue of the mass of substance which passes through a given surface per unit time.", - "xrefs" : [ "url:http://en.wikipedia.org/wiki/Mass_flow_rate" ] + "val" : "A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion).", + "xrefs" : [ "Biology-online:Biology-online" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "porous", + "xrefs" : [ ] + } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-07-28T03:02:03Z" + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000983" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "mass flow rate" + "lbl" : "permeable" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001397", + "id" : "http://purl.obolibrary.org/obo/PATO_0000985", "meta" : { "definition" : { - "val" : "A cellular quality that arises by virtue of whether the bearer's disposition to differentiate into one or more mature cell types.", + "val" : "A porosity quality inhering in a bearer by virtue of the bearer's being incapable of admitting the passage of gas or liquid through pores or interstices.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000984" } ] }, "type" : "CLASS", - "lbl" : "cellular potency" + "lbl" : "non-porous" }, { - "id" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", + "id" : "http://purl.obolibrary.org/obo/PATO_0000984", "meta" : { "definition" : { - "val" : "q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.", - "xrefs" : [ "PATOC:CJM" ] + "val" : "A porosity quality inhering in a bearer by virtue of the bearer's being capable of admitting the passage of gas or liquid through pores or interstices.", + "xrefs" : [ "PATOC:GVG" ] }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/RO_0002604", + "val" : "http://purl.obolibrary.org/obo/PATO_0000985" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'." } ] }, - "type" : "PROPERTY", - "lbl" : "increased_in_magnitude_relative_to" + "type" : "CLASS", + "lbl" : "porous" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000067", + "id" : "http://purl.obolibrary.org/obo/PATO_0000987", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -55155,158 +55057,101 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative pilosity" + "lbl" : "obsolete relative consistency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001390", + "id" : "http://purl.obolibrary.org/obo/PATO_0000986", "meta" : { - "definition" : { - "val" : "A trisomy quality inhering in a bearer when part of the bearer's extra chromosome is attached to one of the other chromosomes, or if one of the bearer's chromosomes has two copies of part of its chromosome.", - "xrefs" : [ "Wikipedia:http://en.wikipedia.org/wiki/Partial_trisomy" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "partial trisomy" + "lbl" : "obsolete absolute consistency" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0001391", + "id" : "http://purl.obolibrary.org/obo/PATO_0000989", "meta" : { - "definition" : { - "val" : "A trisomy quality inhering in a bearer by virtue of the bearer's having extra chromosomal material in only some of it's cells.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#cell_quality" ], "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" } ] }, "type" : "CLASS", - "lbl" : "mosaic trisomy" + "lbl" : "obsolete absolute consistency value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000060", + "id" : "http://purl.obolibrary.org/obo/PATO_0000988", "meta" : { - "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#hpo_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "distribution", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "pattern", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001565" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000132" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "spatial pattern" + "lbl" : "obsolete relative consistency value" }, { - "id" : "http://purl.obolibrary.org/obo/RO_0002180", + "id" : "http://purl.obolibrary.org/obo/RO_0002506", "meta" : { - "definition" : { - "val" : "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.", - "xrefs" : [ ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://purl.obolibrary.org/obo/RO_0001900", - "val" : "http://purl.obolibrary.org/obo/RO_0001901" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000114", - "val" : "http://purl.obolibrary.org/obo/IAO_0000125" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", - "val" : "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", - "val" : "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val" : "http://ontologydesignpatterns.org/wiki/Submissions:Componency" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, "type" : "PROPERTY", - "lbl" : "has component" + "lbl" : "causal relation between material entities" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002258", + "id" : "http://purl.obolibrary.org/obo/RO_0002500", "meta" : { "definition" : { - "val" : "A shape quality inhering in a bearer by virtue of the bearer's having a point.", - "xrefs" : [ "PATOC:http://www.merriam-webster.com/dictionary/pointed" ] + "val" : "A relationship between a material entity and a process where the material entity has some causal role that influences the process", + "xrefs" : [ ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-09-08T03:15:16Z" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, - "type" : "CLASS", - "lbl" : "pointed" + "type" : "PROPERTY", + "lbl" : "causal agent in process" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002259", + "id" : "http://purl.obolibrary.org/obo/RO_0002501", "meta" : { "definition" : { - "val" : "A spatial quality inhering in a bearer by virtue of the bearer's being located near in space in relation to another entity.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#relational_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "close to", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "approaches", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "vicinity of", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "near to", + "val" : "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one of direct activation or direct inhibition. p may be upstream, downstream, part of or a container of q.", "xrefs" : [ ] - } ], + }, "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000232", + "val" : "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-09-08T03:20:06Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001771" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://purl.obolibrary.org/obo/ro/docs/causal-relations" } ] }, - "type" : "CLASS", - "lbl" : "adjacent to" + "type" : "PROPERTY", + "lbl" : "causal relation between processes" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000073", + "id" : "http://purl.obolibrary.org/obo/PATO_0000981", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -55317,105 +55162,120 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete relative_quality" + "lbl" : "obsolete relative porosity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002252", + "id" : "http://purl.obolibrary.org/obo/PATO_0000980", "meta" : { - "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being flattened along the antero-posterior axis.", - "xrefs" : [ "PATOC:JC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "antero-posteriorly compressed", - "xrefs" : [ ] - } ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-08-16T03:57:42Z" - }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "antero-posteriorly flattened" + "lbl" : "obsolete absolute porosity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002253", + "id" : "http://purl.obolibrary.org/obo/RO_0002502", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://purl.obolibrary.org/obo/BFO_0000169" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "depends on" + }, { + "id" : "http://purl.obolibrary.org/obo/RO_0002507", "meta" : { "definition" : { - "val" : "A quality inhering in a bearer by virtue of the bearer's being roundish, flattish shape, possibly with a slightly angled edge.", - "xrefs" : [ "PATOC:CVC" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "plate-like", + "val" : "s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" + "pred" : "http://purl.org/dc/terms/creator", + "val" : "Chris Mungall" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-08-16T03:57:48Z" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "Pier Buttigieg" + }, { + "pred" : "http://purl.org/dc/terms/creator", + "val" : "Pier Buttigieg" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "determined by (system to material entity)" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000119", + "val" : "http://www.ncbi.nlm.nih.gov/pubmed/24330602" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "A coral reef environment is determined by a particular coral reef" } ] }, - "type" : "CLASS", - "lbl" : "platelike" + "type" : "PROPERTY", + "lbl" : "determined by" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000072", + "id" : "http://purl.obolibrary.org/obo/RO_0002508", "meta" : { + "definition" : { + "val" : "inverse of determined by", + "xrefs" : [ ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco", "http://purl.obolibrary.org/obo/RO_0002259" ], "basicPropertyValues" : [ { - "pred" : "http://www.w3.org/2002/07/owl#deprecated", - "val" : "true" - }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", - "val" : "http://purl.obolibrary.org/obo/PATO_0000001" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" }, { - "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", - "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + "pred" : "http://purl.obolibrary.org/obo/IAO_0000589", + "val" : "determines (material entity to system)" } ] }, - "type" : "CLASS" + "type" : "PROPERTY", + "lbl" : "determines" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002250", + "id" : "http://purl.obolibrary.org/obo/RO_0002509", "meta" : { "definition" : { - "val" : "A degree of pigmentation quality that is relatively high.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "hyperpigmented", + "val" : "s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w.", "xrefs" : [ ] - } ], + }, + "subsets" : [ "http://purl.obolibrary.org/obo/ro/subsets#ro-eco" ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000117", + "val" : "Chris Mungall" + } ] + }, + "type" : "PROPERTY", + "lbl" : "determined by part of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000994", + "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - "val" : "2010-08-09T04:17:19Z" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002251" + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" } ] }, "type" : "CLASS", - "lbl" : "increased pigmentation" + "lbl" : "obsolete absolute viscosity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000075", + "id" : "http://purl.obolibrary.org/obo/PATO_0000993", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -55426,9 +55286,9 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete threshability" + "lbl" : "obsolete relative viscosity" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000074", + "id" : "http://purl.obolibrary.org/obo/PATO_0000996", "meta" : { "basicPropertyValues" : [ { "pred" : "http://www.w3.org/2002/07/owl#deprecated", @@ -55439,92 +55299,93 @@ } ] }, "type" : "CLASS", - "lbl" : "obsolete shattering" + "lbl" : "obsolete absolute viscosity value" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0002251", + "id" : "http://purl.obolibrary.org/obo/PATO_0000995", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete viscosity value" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000998", "meta" : { "definition" : { - "val" : "A degree of pigmentation quality that is relative low.", + "val" : "A viscosity quality inhering in a bearer by virtue of the bearer's having viscosity.", "xrefs" : [ "PATOC:GVG" ] }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim" ], - "synonyms" : [ { - "pred" : "hasExactSynonym", - "val" : "hypopigmented", - "xrefs" : [ ] - } ], + "subsets" : [ "http://purl.obolibrary.org/obo/pato#mpath_slim", "http://purl.obolibrary.org/obo/pato#value_slim", "http://purl.obolibrary.org/obo/pato#disposition_slim" ], "basicPropertyValues" : [ { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "viscous" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000997", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by", - "val" : "george" - }, { - "pred" : "http://purl.obolibrary.org/obo/RO_0002604", - "val" : "http://purl.obolibrary.org/obo/PATO_0002250" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date", - 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When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code \"no data\" (ND), is used to indicate this." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "GO:0008372" + } ] + }, + "type" : "CLASS", + "lbl" : "cellular_component" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000084", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative rhythym" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000083", + "meta" : { + "definition" : { + "val" : "A quality that exists by virtue of being a particular point in the time of a cycle.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "phase" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000086", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000050", + "meta" : { + "definition" : { + "val" : "a core relation that holds between a part and its whole", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "BFO:0000050" + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this day is part of this year (occurrent parthood)" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000031" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000004" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000002" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000017" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0040042", + "val" : "http://purl.obolibrary.org/obo/BFO_0000019" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my brain is part of my body (continuant parthood, two material entities)" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://ontologydesignpatterns.org/wiki/Submissions:PartOf" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val" : "http://www.obofoundry.org/ro/#OBO_REL:part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "is part of" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "part_of" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." + } ] + }, + "type" : "PROPERTY", + "lbl" : "part of" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000085", + "meta" : { + "definition" : { + "val" : "A quality inhering in a bearer by virtue of the bearer's disposition to detect or perceive external stimulation.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#disposition_slim", "http://purl.obolibrary.org/obo/pato#attribute_slim", "http://purl.obolibrary.org/obo/pato#relational_slim" ], + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "sensitivity", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "sensitivity toward" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000088", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute disease sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000087", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete disease sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000089", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative disease sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000051", + "meta" : { + "definition" : { + "val" : "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2.", + "xrefs" : [ "PATOC:CJM" ] + }, + "xrefs" : [ { + "val" : "BFO:0000051" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "this year has part this day (occurrent parthood)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#is_cyclic", + "val" : "false" + }, { + "pred" : "http://purl.obolibrary.org/obo/RO_0001900", + "val" : "http://purl.obolibrary.org/obo/RO_0001901" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "has_part" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my body has part my brain (continuant parthood, two material entities)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "chebi_ontology" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "has part" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000116", + "val" : "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "has_part" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000112", + "val" : "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + } ] + }, + "type" : "PROPERTY", + "lbl" : "has part" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000080", + "meta" : { + "definition" : { + "val" : "A physical quality of a process inhering in a bearer by virtue of the size of the bearer's maximum displacement from the 'normal' position, when periodic motion is taking place.", + "xrefs" : [ "thesaurus.maths:thesaurus.maths" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "amplitude" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000082", + "meta" : { + "definition" : { + "val" : "A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm.", + "xrefs" : [ "reference.com:reference.com" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "persistence" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000081", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000231", + "val" : "http://purl.obolibrary.org/obo/IAO_0000227" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0100001", + "val" : "http://purl.obolibrary.org/obo/PATO_0001309" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000095", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete absolute drug sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000094", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete drug sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000097", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete herbicide sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/NCBITaxon_9443", + "meta" : { + "synonyms" : [ { + "pred" : "hasExactSynonym", + "val" : "primate", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "primates", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "Primata", + "xrefs" : [ ] + } ] + }, + "type" : "CLASS", + "lbl" : "Primates" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000096", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative drug sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000099", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete plant growth hormone sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000098", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete insecticide sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/ENVO_01001110", + "meta" : { + "definition" : { + "val" : "An environmental system which includes both living and non-living components.", + "xrefs" : [ "https://en.wikipedia.org/wiki/Ecosystem" ] + } + }, + "type" : "CLASS", + "lbl" : "ecosystem" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000091", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete stress sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000040", + "meta" : { + "definition" : { + "val" : "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.", + "xrefs" : [ ] + } + }, + "type" : "CLASS", + "lbl" : "material entity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000090", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000093", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete chemical sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000092", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete abiotic stress sensitivity" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000066", + "meta" : { + "definition" : { + "val" : "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "BFO:0000066" + } ], + "basicPropertyValues" : [ { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000111", + "val" : "occurs in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds in" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "occurs_in" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#shorthand", + "val" : "occurs_in" + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "unfolds_in" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "external" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + } ] + }, + "type" : "PROPERTY", + "lbl" : "occurs in" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000067", + "meta" : { + "definition" : { + "val" : "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t", + "xrefs" : [ ] + }, + "xrefs" : [ { + "val" : "BFO:0000067" + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "uberon" + }, { + "pred" : 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Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other." + }, { + "pred" : "http://purl.obolibrary.org/obo/IAO_0000118", + "val" : "preceded_by" + } ] + }, + "type" : "PROPERTY", + "lbl" : "preceded_by" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000063", + "meta" : { + "definition" : { + "val" : "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. 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For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.", + "xrefs" : [ ] + }, + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy", + "val" : "http://purl.obolibrary.org/obo/bfo.owl" + } ] + }, + "type" : "CLASS", + "lbl" : "generically dependent continuant" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000027", + "type" : "CLASS", + "lbl" : "object aggregate" + }, { + "id" : "http://purl.obolibrary.org/obo/BFO_0000029", + "type" : "CLASS", + "lbl" : "site" + }, { + "id" : "http://purl.obolibrary.org/obo/PATO_0000073", + "meta" : { + "basicPropertyValues" : [ { + "pred" : "http://www.w3.org/2002/07/owl#deprecated", + "val" : "true" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + } ] + }, + "type" : "CLASS", + "lbl" : "obsolete relative_quality" + }, { + "id" : 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(axiom label in BFO2 Reference: [050-003])", + "xrefs" : [ ] + } + }, + "type" : "CLASS", "lbl" : "specifically dependent continuant" }, { - "id" : "http://purl.obolibrary.org/obo/PATO_0000070", - "meta" : { - "definition" : { - "val" : "The number of entities of this type that are part of the whole organism.", - "xrefs" : [ "PATOC:GVG" ] - }, - "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], - "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "presence", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "number", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "presence or absence in organism", - "xrefs" : [ ] - }, { - "pred" : "hasExactSynonym", - "val" : "quantitative", - "xrefs" : [ ] - }, { - "pred" : "hasRelatedSynonym", - "val" : "count in organism", - "xrefs" : [ ] - } ], - "basicPropertyValues" : [ { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001169" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0001226" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000071" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", - "val" : "PATO:0000053" - }, { - "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", - "val" : "quality" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "This term was originally named \"presence\". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10." - } ] - }, - "type" : "CLASS", - "lbl" : "amount" - } ], - "edges" : [ { - "sub" : "http://purl.obolibrary.org/obo/PATO_0010002", + "id" : "http://purl.obolibrary.org/obo/PATO_0000070", + "meta" : { + "definition" : { + "val" : "The number of entities of this type that are part of the whole organism.", + "xrefs" : [ "PATOC:GVG" ] + }, + "subsets" : [ "http://purl.obolibrary.org/obo/pato#attribute_slim" ], + "synonyms" : [ { + "pred" : "hasRelatedSynonym", + "val" : "presence", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "presence or absence in organism", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "number", + "xrefs" : [ ] + }, { + "pred" : "hasExactSynonym", + "val" : "quantitative", + "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "count in organism", + "xrefs" : [ ] + } ], + "basicPropertyValues" : [ { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001226" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000071" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0000053" + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", + "val" : "quality" + }, { + "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", + "val" : "This term was originally named \"presence\". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10." + }, { + "pred" : "http://www.geneontology.org/formats/oboInOwl#hasAlternativeId", + "val" : "PATO:0001169" + } ] + }, + "type" : "CLASS", + "lbl" : "amount" + } ], + "edges" : [ { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002005", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001280", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000954" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0002025", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001053" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042995", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0044464" + }, { + "sub" : "http://purl.obolibrary.org/obo/PATO_0001414", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" + }, { + "sub" : 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{ - "sub" : "http://purl.obolibrary.org/obo/PATO_0002487", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002629", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000049" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000644", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000632", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000440" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0045936", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0006796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002252", "pred" : "is_a", @@ -55905,34 +64275,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001521", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000080" - }, { - "sub" : 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"http://purl.obolibrary.org/obo/PATO_0002234", "pred" : "is_a", @@ -56001,10 +64311,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001382", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001377" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0040016", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000947", "pred" : "is_a", @@ -56017,10 +64323,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001969", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000402" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001466", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001862", "pred" : "is_a", @@ -56030,13 +64332,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000454" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001515", + "sub" : "http://purl.obolibrary.org/obo/CHEBI_59999", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000019" + "obj" : "http://purl.obolibrary.org/obo/CHEBI_24431" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0016020", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0110165" + "sub" : "http://purl.obolibrary.org/obo/RO_0002507", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002508" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001735", "pred" : "is_a", @@ -56045,18 +64347,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001779", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045065", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001815" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001955", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001875" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002006", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001323", "pred" : "is_a", @@ -56066,29 +64356,21 @@ "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015007", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0050794", + "sub" : "http://purl.obolibrary.org/obo/PCO_0000000", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0050789" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0045937", - "pred" : "http://purl.obolibrary.org/obo/RO_0002213", - "obj" : "http://purl.obolibrary.org/obo/GO_0006796" + "obj" : "http://purl.obolibrary.org/obo/PCO_0000031" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015016", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900120", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043393" + }, { + "sub" : "http://purl.obolibrary.org/obo/NCBITaxon_33213", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_6072" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0023057", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", @@ -56097,10 +64379,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0023056", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", "obj" : "http://purl.obolibrary.org/obo/GO_0023052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001860", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000409", "pred" : "is_a", @@ -56114,21 +64392,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0043229", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0043226" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000050", + "sub" : "http://purl.obolibrary.org/obo/PCO_0000029", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000165" + "obj" : "http://purl.obolibrary.org/obo/PCO_0000000" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000008", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000599", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000921" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002222", "pred" : "is_a", @@ -56150,9 +64420,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000622" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045087", + "sub" : "http://purl.obolibrary.org/obo/PCO_0000027", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045000" + "obj" : "http://purl.obolibrary.org/obo/PCO_0000018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045091", "pred" : "is_a", @@ -56165,18 +64435,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000327", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000016" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001394", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001393" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001473", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000470" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001890", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001396", "pred" : "is_a", @@ -56186,29 +64448,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0008152", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0008150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015004", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/CARO_0001010", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000040" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001769", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001457", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002062" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001404", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001396" + "sub" : "http://purl.obolibrary.org/obo/IAO_0000428", + "pred" : "type", + "obj" : "http://purl.obolibrary.org/obo/IAO_0000078" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000122", "pred" : "is_a", @@ -56225,14 +64467,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002170", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001786" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002090", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045000", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001383", "pred" : "is_a", @@ -56241,10 +64475,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001480", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045077", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001956" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002464", "pred" : "is_a", @@ -56261,10 +64491,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051100", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0044092" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001467", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000406" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051347", "pred" : "is_a", @@ -56274,17 +64500,9 @@ "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0051716" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002477", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001413", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002242" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002179", + "sub" : "http://purl.obolibrary.org/obo/PCO_0000001", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000628" + "obj" : "http://purl.obolibrary.org/obo/PCO_0000018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002189", "pred" : "is_a", @@ -56297,10 +64515,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001516", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001465", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000646" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002488", "pred" : "is_a", @@ -56309,58 +64523,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001659", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000941", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000912", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0048585", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0048519" }, { 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"http://purl.obolibrary.org/obo/PATO_0002267", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002367", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000384" }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002500", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002595" + "sub" : "http://purl.obolibrary.org/obo/ENVO_01001000", + "pred" : "http://purl.obolibrary.org/obo/RO_0002507", + "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_131567" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001786", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045082", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001806", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000085" - }, { - "sub" : 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- "sub" : "http://purl.obolibrary.org/obo/GO_0023051", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0050789" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001965", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001877", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001419" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002351", "pred" : "is_a", @@ -57377,14 +65051,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000261", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002482", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000336", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002382", "pred" : "is_a", @@ -57398,13 +65064,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001444" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002176", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002175" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002043", + "sub" : "http://purl.obolibrary.org/obo/NCBITaxon_2759", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002041" + "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_131567" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001293", "pred" : "is_a", @@ -57413,34 +65075,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000323", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0019220", - "pred" : "http://purl.obolibrary.org/obo/RO_0002211", - "obj" : "http://purl.obolibrary.org/obo/GO_0006796" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002479", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001410" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001577", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000982" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000973", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000970" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002233", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000587", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001053", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002506", "pred" : "subPropertyOf", @@ -57457,50 +65099,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002188", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045068", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002360" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000051", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002003", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001340", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001894" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0023056", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0048518" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0007165", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/GO_0023052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001253", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000321" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0025000", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001359", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002087", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000062" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0040000", + "sub" : "http://purl.obolibrary.org/obo/ENVO_01000998", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000625" + "obj" : "http://purl.obolibrary.org/obo/ENVO_01000254" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045044", "pred" : "is_a", @@ -57509,34 +65115,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0060003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0060001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001410", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001597", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000614" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001623", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002300", "pred" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001832", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000891" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001614", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001638", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" + "sub" : "http://purl.obolibrary.org/obo/PCO_0000004", + "pred" : "http://purl.obolibrary.org/obo/RO_0000052", + "obj" : "http://purl.obolibrary.org/obo/PCO_0000002" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002270", "pred" : "is_a", @@ -57545,42 +65135,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000467", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001723", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001720" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001517", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001516" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001624", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001510" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001844", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001842" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001305", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002374", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001227" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001747", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001744" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001499", - "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0005488", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0003674" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045008", "pred" : "is_a", @@ -57589,18 +65155,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001808", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000060", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000051" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002286", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002384" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001595", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001708" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001592", "pred" : "is_a", @@ -57621,14 +65179,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001781", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000915" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002350", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002122", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002147", "pred" : "is_a", @@ -57642,9 +65192,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001803", + "sub" : "http://purl.obolibrary.org/obo/ENVO_01001002", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000927" + "obj" : "http://purl.obolibrary.org/obo/ENVO_01001000" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002428", "pred" : "subPropertyOf", @@ -57653,10 +65203,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015014", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002497", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002483", "pred" : "is_a", @@ -57665,14 +65211,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001962", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000405" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001902", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000454", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000066" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001892", "pred" : "is_a", @@ -57681,30 +65219,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000708", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000152" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015027", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001930", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001929" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000695", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002255", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002519", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000569", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000119" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000583", "pred" : "is_a", @@ -57713,6 +65235,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002265", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" + }, { + "sub" : "http://purl.obolibrary.org/obo/CHEBI_46662", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/CHEBI_59999" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002185", "pred" : "is_a", @@ -57729,18 +65255,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001244", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000945", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001300", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001291" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001668", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001368", "pred" : "is_a", @@ -57749,10 +65267,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001499", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002027", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002269", "pred" : "is_a", @@ -57761,14 +65275,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045031", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001164" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001833", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000891" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045059", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000915" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001172", "pred" : "is_a", @@ -57777,38 +65283,22 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0045937", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0010562" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045080", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001319", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000189" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001306", + "sub" : "http://purl.obolibrary.org/obo/ENVO_01000997", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" + "obj" : "http://purl.obolibrary.org/obo/ENVO_01000254" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000694", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002325" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001615", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001611" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001639", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001637" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000706", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001693", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000998" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0060002", "pred" : "is_a", @@ -57821,14 +65311,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001518", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001516" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001625", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001510" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000964", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000957" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002091", "pred" : "is_a", @@ -57841,10 +65323,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001594", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001506", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001505" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001559", "pred" : "is_a", @@ -57865,22 +65343,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002271", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002269" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002013", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0055002", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001706", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001724", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001720" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001859", "pred" : "is_a", @@ -57889,10 +65351,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001858", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002076" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002025", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002211" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001973", "pred" : "is_a", @@ -57905,22 +65363,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009987", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0008150" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001762", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000279" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001888", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001548" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0050790", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0065009" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045009", "pred" : "is_a", @@ -57929,18 +65375,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001712", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001711" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001626", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0016301", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001903", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" + "sub" : "http://purl.obolibrary.org/obo/RO_0002297", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002295" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001963", "pred" : "is_a", @@ -57953,10 +65395,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002148", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000082", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005013", "pred" : "is_a", @@ -57969,14 +65407,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002337", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001877" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000453", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000066" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002020", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000954" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002028", "pred" : "is_a", @@ -57993,22 +65423,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002498", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0048584", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0048583" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002124", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000944", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002366", "pred" : "is_a", @@ -58025,18 +65443,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000441", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002266", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0015002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001236" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002026", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001243", "pred" : "is_a", @@ -58045,14 +65455,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002228", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000719", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002596", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002500" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001931", "pred" : "is_a", @@ -58061,10 +65463,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000582", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002245" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015028", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002050", "pred" : "http://purl.obolibrary.org/obo/pato#reciprocal_of", @@ -58081,10 +65479,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001269", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000319" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001055", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002287", "pred" : "is_a", @@ -58101,18 +65495,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045006", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002312", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0110165", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0005575" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000069", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000068" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002151", "pred" : "is_a", @@ -58129,26 +65511,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002326", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002248", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002247" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001896", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000406", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001591" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0005622", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0005575" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002139", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002138" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002454", "pred" : "is_a", @@ -58158,21 +65520,9 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001424" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001690", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001579" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000057", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002323" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002467", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0019220", + "sub" : "http://purl.obolibrary.org/obo/NCBITaxon_117571", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0051174" + "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_117570" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002057", "pred" : "is_a", @@ -58181,18 +65531,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002166", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000694" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000297", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002206", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002218", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0016301", "pred" : "is_a", @@ -58205,26 +65543,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009893", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0019222" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0030007", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0030003" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002157", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001852" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000927", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000085" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045033", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001331" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0035556", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0042327", "pred" : "is_a", @@ -58233,26 +65555,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000427", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001026", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000119", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001708" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000591", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002014", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002335" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045019", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001389", "pred" : "is_a", @@ -58265,50 +65567,26 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0031325", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009893" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001375", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001393" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000613", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001871", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001233", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002400", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000141", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001409" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0042326", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0016310" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002418", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002427" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000600", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000586" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001418", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002265" + "sub" : "http://purl.obolibrary.org/obo/GO_0042326", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001372", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001294" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001487", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004047", "pred" : "subPropertyOf", @@ -58317,10 +65595,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002322", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002318" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001398", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002102" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001341", "pred" : "is_a", @@ -58333,18 +65607,10 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0009892", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0019222" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001462", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001464" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0050789", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0065007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000948", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002509", "pred" : "is_a", @@ -58357,10 +65623,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001611", "pred" : "http://purl.obolibrary.org/obo/pato#towards", "obj" : 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"http://purl.obolibrary.org/obo/PATO_0001806" + "obj" : "http://purl.obolibrary.org/obo/GO_0042325" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045017", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002074", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001460", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001406", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001458" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001908" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002443", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001796", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000404" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002028", + "sub" : "http://purl.obolibrary.org/obo/PATO_0000189", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002027" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0032091", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0005515" + "sub" : "http://purl.obolibrary.org/obo/PATO_0001704", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0001424" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000015", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002212", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001301" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001934", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001808", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000411" + "obj" : "http://purl.obolibrary.org/obo/PATO_0001806" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001961", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002443", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048523", "pred" : "is_a", @@ -58733,66 +65811,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002358", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001242", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002469", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002419", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000647", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001911", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002076" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002299", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045032", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000299" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0005929", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", - "obj" : "http://purl.obolibrary.org/obo/GO_0030990" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0030005", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0030001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015010", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0015009" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0010004", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0010002" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000381", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000044" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002109", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045083", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001823" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001023", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002349", "pred" : "is_a", @@ -58801,14 +65831,6 @@ "sub" : "http://purl.obolibrary.org/obo/pato#has_divisor_quality", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/pato#has_ratio_quality" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002263", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002264" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0005017", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000546", "pred" : "is_a", @@ -58817,10 +65839,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002301", "pred" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000411", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000947" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000394", "pred" : "is_a", @@ -58837,10 +65855,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001236", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001399", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001397" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002320", "pred" : "is_a", @@ -58861,22 +65875,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001277", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000953" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002131" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002342", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002227" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002405", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002412" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001989", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001591" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002595", "pred" : "subPropertyOf", @@ -58889,18 +65891,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000937", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002264" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001481", - "pred" : "is_a", - "obj" 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"obj" : "http://purl.obolibrary.org/obo/PATO_0001645" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001619", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001439" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001570", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001564" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001932", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000440" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002537", "pred" : "is_a", @@ -58957,14 +65931,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0042327", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", "obj" : "http://purl.obolibrary.org/obo/GO_0016310" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002137", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002136" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001935", - "pred" : "is_a", - "obj" : 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"http://purl.obolibrary.org/obo/PATO_0002278", "pred" : "is_a", @@ -59129,30 +66015,6 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002352", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000056" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000043", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000592", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000380", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000044" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002412", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002090" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002258", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001870", - "pred" : 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"subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002411" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001267", "pred" : "is_a", @@ -62965,18 +67991,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000921", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001708" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001618", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001450", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045089", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045088" }, { "sub" : "http://purl.obolibrary.org/obo/CARO_0000006", "pred" : "is_a", @@ -62985,34 +67999,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0031323", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0019222" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001780", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000587" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001802", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000330" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001817", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001778" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001475", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001715", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001350", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001028" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002236", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001785", "pred" : "is_a", @@ -63021,18 +68015,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001583", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001227" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001351", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001019" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001725", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045041", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045040" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000085", "pred" : "is_a", @@ -63049,46 +68035,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045053", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045050" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015005", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002212" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001430", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001428" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002324", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002323" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_1900121", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_1900120" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002253", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000407" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045065", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045064" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002330", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001199" - }, { - "sub" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to" - 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"is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0010563" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001308", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001314" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001412", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001555", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001241" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001665", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001652", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002161", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001425", "pred" : "is_a", @@ -63153,26 +68083,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002436", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002434" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002280", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002278" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001573", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000965" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001838", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002243" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001794", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002251", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0065009", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -63181,10 +68095,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0032991", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0005575" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001189", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002144", "pred" : "is_a", @@ -63193,42 +68103,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002481", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001636", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001634" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002412", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002411" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001528", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001519" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001893", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001331" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000018", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001296" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001975", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001976" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002504", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045036", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000982" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001503", + "sub" : "http://purl.obolibrary.org/obo/NCBITaxon_6072", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001502" + "obj" : "http://purl.obolibrary.org/obo/NCBITaxon_33208" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001790", "pred" : "is_a", @@ -63237,10 +68127,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001866", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001745", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001744" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001416", "pred" : "is_a", @@ -63249,54 +68135,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0035556", "pred" : "http://purl.obolibrary.org/obo/BFO_0000066", "obj" : "http://purl.obolibrary.org/obo/GO_0005622" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001944", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000953" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002494", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001612", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001615" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001663", - "pred" : "is_a", - "obj" : 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"obj" : "http://purl.obolibrary.org/obo/PATO_0001488" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001938", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002317" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045039", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002248" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002014", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002305", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002411" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001263", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000324" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002195", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000983", - "pred" : "is_a", - "obj" : 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"http://purl.obolibrary.org/obo/PATO_0000955", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/PATO_0000274" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000918", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001426", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001710" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001928", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001188", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001758", "pred" : "is_a", @@ -63489,34 +68259,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001748", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001857" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001746", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001744" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002632", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000068" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002141", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001019" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001839", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002243" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001925", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001504", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001502" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001579", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001818", "pred" : "is_a", @@ -63529,34 +68275,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001807", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001664", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002318", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002145", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002120", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001574", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001906" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0040003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001613", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001615" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002309", "pred" : "is_a", @@ -63565,10 +68291,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001843", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001842" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001533", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000019" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001651", "pred" : "is_a", @@ -63577,14 +68299,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002134", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000056", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0051099", - "pred" : "http://purl.obolibrary.org/obo/RO_0002213", - "obj" : "http://purl.obolibrary.org/obo/GO_0005488" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001420", "pred" : "is_a", @@ -63593,10 +68307,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001783", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000049" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002344", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000454" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045051", "pred" : "is_a", @@ -63609,18 +68319,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001927", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002496", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001901", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045057", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001711" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002184", "pred" : "is_a", @@ -63637,26 +68335,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045030", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002202", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002258" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002518", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0030545", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0098772" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0050001", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002196", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002193" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002019", "pred" : "is_a", @@ 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"http://purl.obolibrary.org/obo/PATO_0045048", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001806" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001262", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000322" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002350", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0031324", "pred" : "is_a", @@ -63721,10 +68391,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000701", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045069", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005011", "pred" : "is_a", @@ -63741,10 +68407,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001537" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001275", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000321" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0005020", "pred" : "is_a", @@ -63761,10 +68423,6 @@ "sub" : "http://purl.obolibrary.org/obo/GO_1902531", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0035556" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000595", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000918" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001891", "pred" : "http://purl.obolibrary.org/obo/pato#has_cross_section", @@ -63773,10 +68431,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0015026", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002630", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002382", "pred" : "is_a", @@ -63789,14 +68443,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0040009", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002008" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002418", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002501" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0032091", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0043393" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005634", "pred" : "is_a", @@ -63805,38 +68451,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001482", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0015007" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002284", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001689", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001476" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000586", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001439", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001579" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0005001", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048018", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002433", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002502", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001755", "pred" : "is_a", @@ -63845,18 +68471,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001199", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001525", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001520" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001717", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001299" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001674", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000033" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001537", "pred" : "is_a", @@ -63865,22 +68483,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002022", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002578" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001480", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000051", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000982" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001791", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001805", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000150" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002492", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002208", "pred" : "is_a", @@ -63909,58 +68515,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045016", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001171" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001575", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001025" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000047", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001421", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000169" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045075", - "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001357", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002007" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001667", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001435" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015010", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002235", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002214", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001979" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0010646", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0050794" - 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{ - "sub" : "http://purl.obolibrary.org/obo/PATO_0001899", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001648" + "sub" : "http://purl.obolibrary.org/obo/RO_0002507", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001905", "pred" : "is_a", @@ -64001,10 +68555,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0045079", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002399", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002387", "pred" : "is_a", @@ -64013,10 +68563,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002072", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001971", - "pred" : "is_a", - "obj" : 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"http://purl.obolibrary.org/obo/PATO_0001721", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002404", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001719" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001305", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001810", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000146" + "obj" : "http://purl.obolibrary.org/obo/PATO_0002255" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002013", + "sub" : "http://purl.obolibrary.org/obo/PATO_0001265", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000318" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1902533", "pred" : "is_a", @@ -64485,10 +68779,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001264", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045086", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045073" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000403", "pred" : "is_a", @@ -64497,10 +68787,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000321", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045085", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045084" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001566", "pred" : "is_a", @@ -64509,26 +68795,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000515", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001046" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002353", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001509" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0098772", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0065009" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001185", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045022", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002243" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045046", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002136" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000499", "pred" : "is_a", @@ -64537,30 +68811,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000366", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" + }, { + "sub" : "http://purl.obolibrary.org/obo/IAO_0000423", + "pred" : "type", + "obj" : "http://purl.obolibrary.org/obo/IAO_0000078" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045075", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001615" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002393", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000505", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000078" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048585" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002381", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002500", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002275", "pred" : "is_a", @@ -64573,42 +68835,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002264" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0033673", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0051348" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0007154", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0009987" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001558", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001564" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002490", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001687", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000772", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000773" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0005022", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001334" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002219", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002006" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045063", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002521", "pred" : "is_a", @@ -64617,10 +68851,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0030002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000646" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045073", - "pred" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000461" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000952", "pred" : "is_a", @@ -64629,74 +68859,26 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0023056", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0023051" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001438", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001435" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001719", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000186" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002231", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001786" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002200", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002198" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002512", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002526", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000133" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002210", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001865" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001656", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001655" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001815", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001230" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002525", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0015012", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001547" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001874", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001873" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002405", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000141" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001290", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002534", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001753", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001752" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002123", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000467" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001535", "pred" : "is_a", @@ -64709,10 +68891,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002391", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001355", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002005" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001578", "pred" : "is_a", @@ -64734,21 +68912,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002191", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002190" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0048522", + "sub" : "http://purl.obolibrary.org/obo/UBERON_0001062", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0048518" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0044093", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0065009" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001741", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001740" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002473", "pred" : "subPropertyOf", @@ -64757,34 +68927,18 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001552", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002302" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0020002", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0020000" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000186", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001995" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001491", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001749" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0003824", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0003674" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002165", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" + "sub" : "http://purl.obolibrary.org/obo/ENVO_00002297", + "pred" : "http://purl.obolibrary.org/obo/RO_0002508", + "obj" : "http://purl.obolibrary.org/obo/ENVO_01000254" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051174", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0006793" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002108", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000623" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045023", "pred" : "is_a", @@ -64793,34 +68947,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001285", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000915", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001708" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045037", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002220" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000618", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001272", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000320" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002036", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045005", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000011" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000297", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002052" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1902532", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", @@ -64830,45 +68960,13 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045090" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000407", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002254" + "sub" : "http://purl.obolibrary.org/obo/RO_0002295", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002324" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001730", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001729" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001586", - "pred" : "http://purl.obolibrary.org/obo/pato#towards", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000161" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002264", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002500" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001492", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0050001" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009966", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0023051" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009967", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0009966" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002203", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002286" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001196", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002480", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001448" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000365", "pred" : "is_a", @@ -64877,10 +68975,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000771", "pred" : "is_a", "obj" : 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"http://purl.obolibrary.org/obo/PATO_0000062", "pred" : "is_a", @@ -65465,14 +69283,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002094", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002070" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001563", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0051338", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0050790" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001303", "pred" : "is_a", @@ -65489,10 +69299,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001670", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000615", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0030000" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0031325", "pred" : "is_a", @@ -65501,10 +69307,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001550", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001683", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002047", "pred" : "is_a", @@ -65513,10 +69315,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000608", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000136" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009968", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0023057" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001510", "pred" : "is_a", @@ -65529,22 +69327,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001790", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001740", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001739" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001822", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000004", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001018" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000645", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002290" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045090", "pred" : "is_a", @@ -65557,18 +69343,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002505", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001404" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001186", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000261" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045034", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002027" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000957", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001300" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0005634", "pred" : "is_a", @@ -65577,46 +69351,14 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0002520", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000586", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000117" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002298", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002224", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001977" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001328", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001325" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0030003", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000646" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001437", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001435" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002630", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002578" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001889", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001976" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001194", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002155", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0002261", "pred" : "is_a", @@ -65633,46 +69375,22 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001317", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001305" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001885", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001884" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002070", + "sub" : "http://purl.obolibrary.org/obo/PATO_0002426", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" + "obj" : "http://purl.obolibrary.org/obo/PATO_0000052" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001365", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0001925" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001304", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045062", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0045001" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001531", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001431" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0000953", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000014" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0043229", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/GO_0005622" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002190", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002182" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001534", "pred" : "is_a", @@ -65685,46 +69403,30 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001697", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002156", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001599" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0045093", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0045090" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001322", + "sub" : "http://purl.obolibrary.org/obo/PCO_0000002", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002326" + "obj" : "http://purl.obolibrary.org/obo/PCO_0000029" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001577", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002305" }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001852", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002181" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0002035", + "sub" : "http://purl.obolibrary.org/obo/PCO_0000002", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" + "obj" : "http://purl.obolibrary.org/obo/PCO_0000028" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001857", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002005" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000760", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0001707" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001551", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002304" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001684", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001680", "pred" : "is_a", @@ -65733,26 +69435,10 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0001801", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0002303" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0045003", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0002331" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001286", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000324" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0001339", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000025" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000627", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000060" - }, { - "sub" : "http://purl.obolibrary.org/obo/PATO_0000619", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/PATO_0000140" }, { "sub" : "http://purl.obolibrary.org/obo/PATO_0001511", "pred" : "is_a", @@ -65761,10 +69447,6 @@ "sub" : "http://purl.obolibrary.org/obo/PATO_0000367", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/PATO_0000039" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009967", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0023056" } ], "id" : "http://purl.obolibrary.org/obo/pato.json", "meta" : { @@ -65786,10 +69468,17 @@ "pred" : "http://www.geneontology.org/formats/oboInOwl#saved-by", "val" : "segerdel" } ], - "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-29" + "version" : "http://purl.obolibrary.org/obo/pato/releases/2019-10-31" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010469", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0038023" + } ] + }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045041", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002326" ], "restrictions" : [ { @@ -65810,13 +69499,6 @@ "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", "fillerId" : "http://purl.obolibrary.org/obo/GO_0006796" } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001693", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000998" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002297", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001488" ], @@ -65831,13 +69513,6 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002221", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002220" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000569", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000119" ], @@ -65853,2340 +69528,2509 @@ "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045076", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001586" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002002", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002083" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", + "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043229", + "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0043226" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/BFO_0000050", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0005622" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045032", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000299" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002002", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002083" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001583", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001227" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", + "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/ENVO_01000952", + "genusIds" : [ "http://purl.obolibrary.org/obo/ENVO_02500027" ], + "restrictions" : [ { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002233", + "fillerId" : "http://purl.obolibrary.org/obo/ENVO_01000951" + }, { + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002234", + "fillerId" : "http://purl.obolibrary.org/obo/ENVO_01000313" + } ] + }, { + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002298", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001488" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : 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"http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", + "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002328", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002326" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000599", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000921" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000761", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001707" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045054", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000122" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", + "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002056", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001362" ], + "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0015028", + "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0015026" ], "restrictions" : [ { "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" @@ -68212,20 +72056,6 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023051", - "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", - "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001651", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001178" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045057", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001711" ], @@ -68247,20 +72077,6 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0098796", - "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0032991" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/BFO_0000050", - "fillerId" : "http://purl.obolibrary.org/obo/GO_0016020" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048583", - "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", - "fillerId" : "http://purl.obolibrary.org/obo/GO_0050896" - } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002028", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002027" ], @@ -68275,20 +72091,6 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045000", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000161" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045067", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000146" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0002362", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0002360" ], @@ -68303,13 +72105,6 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001713", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001711" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001671", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001566" ], @@ -68324,13 +72119,6 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0001893", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001331" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000470", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000070" ], @@ -68345,13 +72133,6 @@ "propertyId" : "http://purl.obolibrary.org/obo/pato#has_relative_magnitude", "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" } ] - }, { - "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0000387", - "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0000048" ], - "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", - "fillerId" : "http://purl.obolibrary.org/obo/PATO_0000461" - } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/PATO_0045077", "genusIds" : [ "http://purl.obolibrary.org/obo/PATO_0001956" ], @@ -68379,10 +72160,14 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002473", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0003001", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ] + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004", "http://purl.obolibrary.org/obo/CARO_0000000" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000", "http://purl.obolibrary.org/obo/CARO_0000003" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002595", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], @@ -68395,39 +72180,59 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002211", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0000056", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/pato#decreased_in_magnitude_relative_to", "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0000056", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] + "predicateId" : "http://purl.obolibrary.org/obo/RO_0003000", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002295", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000003" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0000053", "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000020" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0001018", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000050", "allValuesFromEdges" : [ { "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000031" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" } ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002506", @@ -68449,6 +72254,14 @@ "predicateId" : "http://purl.obolibrary.org/obo/pato#increased_in_magnitude_relative_to", "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002507", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/RO_0002577" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002509", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/RO_0002577" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/pato#has_divisor_entity", "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470" ] @@ -68468,6 +72281,9 @@ "predicateId" : "http://purl.obolibrary.org/obo/pato#different_in_magnitude_relative_to", "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0000086", + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000019" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002384", "domainClassIds" : [ "http://purl.obolibrary.org/obo/CARO_0000000" ], @@ -68480,12 +72296,16 @@ "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000002" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/pato#has_dividend_entity", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470" ] + "predicateId" : "http://purl.obolibrary.org/obo/RO_0001025", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002334", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/pato#has_dividend_entity", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002434", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000040" ], @@ -68502,14 +72322,14 @@ "predicateId" : "http://purl.obolibrary.org/obo/RO_0002215", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000004" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/pato#has_ratio_quality", - "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470" ], - "rangeClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002018", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ], "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000015" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/pato#has_ratio_quality", + "domainClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0001470" ], + "rangeClassIds" : [ "http://purl.obolibrary.org/obo/PATO_0000001" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", "domainClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ], @@ -68524,20 +72344,8 @@ "rangeClassIds" : [ "http://purl.obolibrary.org/obo/BFO_0000003" ] } ], "propertyChainAxioms" : [ { - "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000066", "http://purl.obolibrary.org/obo/BFO_0000050" ] - }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002566", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002411", "http://purl.obolibrary.org/obo/RO_0002233" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002430", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002212" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002255", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002203", "http://purl.obolibrary.org/obo/BFO_0000050" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002428", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002211" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000050" ] @@ -68547,42 +72355,24 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002449", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002630", "http://purl.obolibrary.org/obo/RO_0002333" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002429", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002213" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0004035", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002305" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002448", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002211", "http://purl.obolibrary.org/obo/RO_0002333" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002131" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0004034", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002304" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002216", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/BFO_0000050" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0004031", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002432", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000066" ] + "predicateId" : "http://purl.obolibrary.org/obo/RO_0001018", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0001025", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000062", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000062" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000063", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/BFO_0000063" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002131", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002596", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002211" ] @@ -68601,18 +72391,15 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002598", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002215", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002202", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002314", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0000052", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000050" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002327", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002202" ] + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002202", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002202" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002211", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002578", "http://purl.obolibrary.org/obo/RO_0002578" ] @@ -68622,15 +72409,66 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002329", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002215" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0000057" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002509", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002507", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002213", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002212", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000066", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002430", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002212" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002255", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002203", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002428", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002211" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002429", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002213" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004035", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002305" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002131" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004034", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002304" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0004031", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002432", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000066" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002131", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002131", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002327", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/BFO_0000051" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002254", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002202" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0004032", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0004047" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002263", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002411" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0000057", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0000057" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0004033", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0004046" ] @@ -68643,12 +72481,6 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002429", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/RO_0002213" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002213", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002212", "http://purl.obolibrary.org/obo/RO_0002212" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002331", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002331", "http://purl.obolibrary.org/obo/BFO_0000050" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002584", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000051", "http://purl.obolibrary.org/obo/RO_0002215" ] diff --git a/pato.obo b/pato.obo index 0ae34a0a..8fbaed82 100644 --- a/pato.obo +++ b/pato.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: releases/2019-10-29/pato.obo +data-version: releases/2019-10-31/pato.obo date: 07:02:2018 10:27 saved-by: segerdel auto-generated-by: OBO-Edit 2.3.1 @@ -26,6 +26,7 @@ id: PATO:0000001 name: quality alt_id: PATO:0000072 def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" [PATOC:GVG] +synonym: "trait" EXACT [] property_value: IAO:0000589 "quality (PATO)" xsd:string [Term] @@ -19821,8 +19822,8 @@ id: PATO:0040000 name: heterotaxic def: "An oriented quality inhering in a bearer by virtue of the bearer's being abnormally placed or arranged." [http://medical-dictionary.thefreedictionary.com/heterotaxic] is_a: PATO:0000625 ! inverted -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-05-21T22:44:38Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040001 @@ -19830,8 +19831,8 @@ name: ring-shaped def: "Shaped like a ring" [https://orcid.org/0000-0002-6601-2165] synonym: "annular" EXACT [] is_a: PATO:0000947 ! elliptic -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T03:56:53Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040002 @@ -19839,24 +19840,24 @@ name: originates from def: "A positional quality inhering in a bearer by virtue of some aspect of that bearer beginning from a position on another entity." [] subset: relational_slim is_a: PATO:0000140 ! position -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T04:10:53Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040003 name: pathogenicity def: "The ability of a pathogen to produce an infectious disease or disorder in an another organism." [https://orcid.org/0000-0001-8941-3984] is_a: PATO:0001995 ! organismal quality -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:24:52Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040004 name: plush def: "A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness." [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0003-4606-0597] is_a: PATO:0000150 ! texture -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:39:30Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040005 @@ -19864,40 +19865,40 @@ name: posteroventral orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally." [https://orcid.org/0000-0003-3162-7490] synonym: "posteroventrally oriented" EXACT [] is_a: PATO:0000133 ! orientation -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T22:54:16Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040006 name: crown like def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:09:59Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040007 name: shell shaped def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:12:47Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040008 name: fringed def: "A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/fringe] is_a: PATO:0002267 ! edge shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:15:10Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040009 name: bowl shaped def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0002008 ! concave 3-D shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:17:01Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040010 @@ -19905,8 +19906,8 @@ name: mobile relative to def: "Mobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] comment: For example, distinct anteroposterior mobility of palatine relative to mesethmoid. is_a: PATO:0000004 ! mobility -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:20:08Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040011 @@ -19914,8 +19915,8 @@ name: immobile relative to def: "Immobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] comment: For example: distinct anteroposterior immobility of palatine relative to mesethmoid. is_a: PATO:0000004 ! mobility -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:21:07Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040012 @@ -19923,8 +19924,8 @@ name: plug shaped def: "A shape that is in the form of a plug, being tube-like and expanded on one end." [https://orcid.org/0000-0003-3162-7490] synonym: "plug like" EXACT [] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:24:41Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040013 @@ -19932,8 +19933,8 @@ name: dorsomedial orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially." [https://orcid.org/0000-0003-3162-7490] synonym: "dorsomedially directed" EXACT [] is_a: PATO:0000133 ! orientation -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:27:57Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040014 @@ -19944,8 +19945,8 @@ synonym: "band-like" EXACT [] synonym: "strip like" EXACT [] synonym: "strip-like" EXACT [] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:31:51Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040015 @@ -19955,16 +19956,16 @@ synonym: "trough like" EXACT [] synonym: "trough-like" EXACT [] synonym: "trough-shaped" EXACT [] is_a: PATO:0002008 ! concave 3-D shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:35:51Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040016 name: pentagonal def: "A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/pentagonal] is_a: PATO:0002006 ! 2-D shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:39:48Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040017 @@ -19972,39 +19973,39 @@ name: dysplastic growth def: "A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal." [https://www.cancer.gov/publications/dictionaries/cancer-terms/def/dysplasia] synonym: "dysgenesis" NARROW [] is_a: PATO:0001433 ! growth quality of occurrent -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T19:01:51Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040019 name: fibrotic def: "Fibrosis is the formation of excess fibrous connective tissue in an organ or tissue in a reparative or reactive process." [https://en.wikipedia.org/wiki/Fibrosis] is_a: PATO:0000025 ! composition -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T23:16:17Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040020 name: spayed female def: "Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal." [] is_a: PATO:0000383 ! female -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-16T22:52:49Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040021 name: unpaired def: "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0000467 ! present -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040022 name: flared def: "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape." [] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:49:07Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040023 @@ -20013,8 +20014,8 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having synonym: "disto-medial orientation" EXACT [] synonym: "distomedial" EXACT [] is_a: PATO:0000133 ! orientation -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:54:33Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040024 @@ -20022,14 +20023,14 @@ name: bilaterally paired def: "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism." [https://orcid.org/0000-0003-3162-7490] synonym: "paired" BROAD [] is_a: PATO:0000467 ! present -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040025 name: lesioned def: "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present." [NCIT:C3824] is_a: PATO:0000141 ! structure -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040026 @@ -21067,6 +21068,47 @@ is_a: PATO:0060001 ! sex-specific created_by: http://orcid.org/0000-0002-1373-1705 creation_date: 2019-08-23T08:51:22Z +[Typedef] +id: RO:0000057 +name: has participant +def: "a relation between a process and a continuant, in which the continuant is somehow involved in the process" [] +property_value: http://purl.org/dc/elements/1.1/source http://www.obofoundry.org/ro/#OBO_REL:has_participant xsd:string +property_value: IAO:0000111 "has participant" xsd:string +property_value: IAO:0000112 "this blood coagulation has participant this blood clot" xsd:string +property_value: IAO:0000112 "this investigation has participant this investigator" xsd:string +property_value: IAO:0000112 "this process has participant this input material (or this output material)" xsd:string +property_value: IAO:0000116 "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time." xsd:string +property_value: IAO:0000118 "has_participant" xsd:string +holds_over_chain: has_part RO:0000057 + +[Typedef] +id: bearer_of +name: bearer of +namespace: uberon +def: "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence" [] +xref: RO:0000053 +property_value: IAO:0000111 "bearer of" xsd:string +property_value: IAO:0000112 "this apple is bearer of this red color" xsd:string +property_value: IAO:0000112 "this vase is bearer of this fragility" xsd:string +property_value: IAO:0000116 "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." xsd:string +property_value: IAO:0000118 "bearer_of" xsd:string +property_value: IAO:0000118 "is bearer of" xsd:string +property_value: RO:0001900 RO:0001901 + +[Typedef] +id: composed_primarily_of +name: composed primarily of +namespace: uberon +def: "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y." [] +def: "x composed_primarily_of y iff: more than half of the mass of x is made from parts of y" [] +subset: ro-eco +xref: RO:0002473 +property_value: IAO:0000112 "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" xsd:string +property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/22293552 +property_value: RO:0001900 RO:0001901 +is_a: has_part ! has part + [Typedef] id: correlates_with name: correlates_with @@ -21098,6 +21140,20 @@ range: PATO:0000001 ! quality created_by: cjm creation_date: 2009-08-26T02:50:08Z +[Typedef] +id: has_component +name: has component +namespace: uberon +def: "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." [] +subset: ro-eco +xref: RO:0002180 +property_value: IAO:0000114 IAO:0000125 +property_value: IAO:0000116 "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." xsd:string +property_value: IAO:0000232 "For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit." xsd:string +property_value: RO:0001900 RO:0001901 +property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:Componency +is_a: has_part ! has part + [Typedef] id: has_cross_section name: has_cross_section @@ -21132,7 +21188,9 @@ is_a: has_ratio_quality ! has_ratio_quality id: has_part name: has part name: has_part +namespace: chebi_ontology namespace: external +namespace: uberon def: "a core relation that holds between a whole and its part" [] def: "Q1 has_part Q2 if and only if: every instance of Q1 is a quality_of an entity that has_quality some Q2." [PATOC:CJM] comment: We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. @@ -21146,6 +21204,7 @@ property_value: IAO:0000116 "Occurrents are not subject to change and so parthoo property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string property_value: IAO:0000118 "has_part" xsd:string property_value: RO:0001900 RO:0001901 +is_cyclic: false is_transitive: true [Typedef] @@ -21209,6 +21268,7 @@ id: part_of name: part of name: part_of namespace: external +namespace: uberon def: "a core relation that holds between a part and its whole" [] xref: BFO:0000050 property_value: IAO:0000111 "is part of" xsd:string diff --git a/pato.owl b/pato.owl index 8ffb4a61..92e5a734 100644 --- a/pato.owl +++ b/pato.owl @@ -8,17 +8,19 @@ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" + xmlns:core="http://purl.obolibrary.org/obo/uberon/core#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:pato="http://purl.obolibrary.org/obo/pato#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:swrl="http://www.w3.org/2003/11/swrl#" + xmlns:chebi="http://purl.obolibrary.org/obo/chebi#3" xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#" xmlns:swrlb="http://www.w3.org/2003/11/swrlb#" xmlns:terms="http://purl.org/dc/terms/" xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + OBO-Edit 2.3.1 07:02:2018 10:27 quality @@ -42,6 +44,11 @@ + editor preferred term + + The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English) + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> editor preferred term @@ -50,7 +57,17 @@ + example + A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + IAO:0000112 + uberon + example_of_usage + true + example_of_usage + example of usage example of usage @@ -59,6 +76,11 @@ + has curation status + PERSON:Alan Ruttenberg + PERSON:Bill Bug + PERSON:Melanie Courtot + OBI_0000281 has curation status @@ -67,7 +89,31 @@ + definition + The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions. + 2012-04-05: +Barry Smith + +The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. + +Can you fix to something like: + +A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. + +Alan Ruttenberg + +Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. + +On the specifics of the proposed definition: + +We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. + +Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. + +We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> definition definition @@ -77,7 +123,17 @@ + editor note + An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology. + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obfoundry.org/obo/obi> + IAO:0000116 + uberon + editor_note + true + editor_note + editor note editor note @@ -86,7 +142,12 @@ + term editor + Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people + 20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115. + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> term editor @@ -95,7 +156,11 @@ + alternative term + An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent) + PERSON:Daniel Schober + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> alternative term @@ -104,7 +169,12 @@ + definition source + formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007 + PERSON:Daniel Schober + Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> definition source @@ -112,20 +182,43 @@ - + + has obsolescence reason + Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification. + PERSON:Alan Ruttenberg + PERSON:Melanie Courtot + has obsolescence reason + - + + curator note + + An administrative note of use for a curator but of no use for a user + PERSON:Alan Ruttenberg + IAO:0000232 + uberon + curator_notes + true + curator_notes + curator note + curator notes + + imported from + For external terms/classes, the ontology from which the term was imported + PERSON:Alan Ruttenberg + PERSON:Melanie Courtot + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> imported from @@ -133,14 +226,32 @@ - + + expand expression to + ObjectProperty: RO_0002104 +Label: has plasma membrane part +Annotations: IAO_0000424 "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.org/obo/owl/GO#GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)" + + A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones + Chris Mungall + expand expression to + expand expression to + + OBO foundry unique label + An alternative name for a class or property which is unique across the OBO Foundry. + The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools . + PERSON:Alan Ruttenberg + PERSON:Bjoern Peters + PERSON:Chris Mungall + PERSON:Melanie Courtot + GROUP:OBO Foundry <http://obofoundry.org/> OBO foundry unique label @@ -148,18 +259,55 @@ - + + elucidation + person:Alan Ruttenberg + Person:Barry Smith + Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms + elucidation + + + + + + + + has axiom id + Person:Alan Ruttenberg + Person:Alan Ruttenberg + A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI + has axiom label + + term replaced by + + Add as annotation triples in the granting ontology + Use on obsolete terms, relating the term to another term that can be used as a substitute + Person:Alan Ruttenberg + Person:Alan Ruttenberg + term replaced by term replaced by + + + + + + + + + + + + @@ -173,14 +321,35 @@ + defined by inverse + + + + + + - + + relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y + The general property hierarchy is: + + "directly P" SubPropertyOf "P" + Transitive(P) + +Where we have an annotation assertion + + "directly P" "is direct form of" "P" + If we have the annotation P is-direct-form-of Q, and we have inverses P' and Q', then it follows that P' is-direct-form-of Q' + Chris Mungall + Chris Mungall + is direct form of + @@ -222,25 +391,72 @@ - + + cjm + 2018-03-14T00:03:16Z + is positive form of + - + + cjm + 2018-03-14T00:03:24Z + is negative form of + - + + part-of is homeomorphic for independent continuants. + R is homemorphic for C iff (1) there exists some x,y such that x R y, and x and y instantiate C and (2) for all x, if x is an instance of C, and there exists some y some such that x R y, then it follows that y is an instance of C. + cjm + 2018-10-21T19:46:34Z + R homeomorphic-for C expands to: C SubClassOf R only C. Additionally, for any class D that is disjoint with C, we can also expand to C DisjointWith R some D, D DisjointWith R some C. + is homeomorphic for + + + + + + + + + An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class. + UBPROP:0000001 + uberon + external_definition + true + external_definition + This annotation property may be replaced with an annotation property from an external ontology such as IAO + external_definition + + + + + An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class. + + + + + + + + + Manually annotated by ChEBI Team + + + Term not to be used for direct annotation @@ -249,6 +465,7 @@ + Term not to be used for direct manual annotation @@ -257,6 +474,7 @@ + AGR slim @@ -265,6 +483,7 @@ + Aspergillus GO slim @@ -273,6 +492,7 @@ + Candida GO slim @@ -281,6 +501,7 @@ + ChEMBL protein targets summary @@ -289,6 +510,7 @@ + FlyBase Drosophila GO ribbon slim @@ -297,6 +519,7 @@ + Generic GO slim @@ -305,6 +528,7 @@ + Metagenomics GO slim @@ -313,6 +537,7 @@ + Mouse GO slim @@ -321,6 +546,7 @@ + PIR GO slim @@ -329,6 +555,7 @@ + Plant GO slim @@ -337,6 +564,7 @@ + Fission yeast GO slim @@ -345,6 +573,7 @@ + Yeast GO slim @@ -443,6 +672,16 @@ + eco subset + + + + + + + + + abstract upper-level terms not directly useful for analysis @@ -450,7 +689,14 @@ - + + + uberon + dc-creator + true + dc-creator + creator + @@ -462,7 +708,14 @@ - + + + uberon + dc-source + true + dc-source + derived from resource + @@ -594,6 +847,14 @@ + + + + has_synonym_type + + + + @@ -614,6 +875,12 @@ + + + + + + @@ -634,6 +901,12 @@ + + + + + + @@ -654,7 +927,14 @@ - + + + uberon + foaf-page + true + foaf-page + page + @@ -697,6 +977,7 @@ A continuant cannot be part of an occurrent: use 'participates in'. An BFO:0000050 external quality + uberon part_of part_of part of @@ -728,9 +1009,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. has_part BFO:0000051 + chebi_ontology external quality + uberon has_part + false has_part We use the has_part relation to relate complex qualities to more primitive ones. A complex quality is a collection of qualities. The complex quality cannot exist without the sub-qualities. For example, the quality 'swollen' necessarily comes with the qualities of 'protruding' and 'increased size'. has part @@ -759,14 +1043,34 @@ A continuant cannot have an occurrent as part: use 'participates in'. preceded by + X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X) x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other. is preceded by preceded_by http://www.obofoundry.org/ro/#OBO_REL:preceded_by + BFO:0000062 + is preceded by + takes place after + uberon + preceded_by + preceded_by preceded by + preceded_by + + + + is preceded by + SIO:000249 + + + + + takes place after + Allen:precedes + @@ -783,7 +1087,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. precedes x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point. + BFO:0000063 + uberon + precedes + precedes + precedes precedes @@ -825,8 +1134,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. site of [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t + BFO:0000067 + uberon + contains_process + contains_process Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant + contains process contains process @@ -861,6 +1175,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. bearer_of is bearer of + RO:0000053 + uberon + bearer_of + bearer_of + bearer of bearer of @@ -905,6 +1224,160 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + this red color is a quality of this apple + a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence + A quality inheres in its bearer at all times for which the quality exists. + is quality of + quality_of + quality of + + + + + + + + + + this apple has quality this red color + a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence + A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist. + has_quality + RO:0000086 + uberon + has_quality + has_quality + has quality + has quality + + + + + + + + + + is location of + my head is the location of my brain + this cage is the location of this rat + a relation between two independent continuants, the location and the target, in which the target is entirely within the location + Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + location_of + + RO:0001015 + uberon + location_of + location_of + location of + location_of + + + + + + + + + + + + + + + contained in + Containment is location not involving parthood, and arises only where some immaterial continuant is involved. + Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition): + Intended meaning: +domain: material entity +range: spatial region or site (immaterial continuant) + + contained_in + + + contained in + + + + + + + + contains + + RO:0001019 + uberon + contains + + contains + contains + contains + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + located in + my brain is located in my head + this rat is located in this cage + a relation between two independent continuants, the target and the location, in which the target is entirely within the location + Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus + Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime + located_in + + http://www.obofoundry.org/ro/#OBO_REL:located_in + RO:0001025 + uberon + located_in + located_in + located in + located_in + + + + + + This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation. + + + + + + This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation. + + + + @@ -982,6 +1455,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. 2017-07-19T17:30:36Z has ligand + + + + A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function. + GOC:dos + @@ -1081,11 +1560,35 @@ A continuant cannot have an occurrent as part: use 'participates in'. + X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) David Osumi-Sutherland starts_at_end_of + A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]. + RO:0002087 + directly preceded by + is directly preceded by + is immediately preceded by + starts_at_end_of + uberon + immediately_preceded_by + immediately_preceded_by X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y) immediately preceded by + immediately_preceded_by + + + + + A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]. + SIO:000251 + + + + + is immediately preceded by + SIO:000251 + @@ -1125,10 +1628,17 @@ A continuant cannot have an occurrent as part: use 'participates in'. + A overlaps B if they share some part in common. x overlaps y if and only if there exists some z such that x has part z and z part of y + BFO_0000051 some (BFO_0000050 some ?Y) http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y) + RO:0002131 + uberon + overlaps + overlaps + overlaps overlaps @@ -1152,7 +1662,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity. For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit. + RO:0002180 + uberon + has_component + has_component + has component has component @@ -1162,19 +1677,33 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + + + + x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y Chris Mungall David Osumi-Sutherland Melissa Haendel Terry Meehan + RO:0002202 + uberon + develops_from + develops_from This is the transitive form of the develops from relation develops from + develops_from @@ -1191,8 +1720,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. Chris Mungall David Osumi-Sutherland Terry Meehan + RO:0002203 + uberon + develops_into + develops_into develops into + develops_into @@ -1236,6 +1770,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. + Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2. Chris Mungall @@ -1281,10 +1816,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. + mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974) osteoclast SubClassOf 'capable of' some 'bone resorption' + A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. Chris Mungall has function realized in @@ -1292,7 +1829,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)". RO_0000053 some (RO_0000054 only ?Y) + RO:0002215 + uberon + capable_of + capable_of + capable of capable of @@ -1307,10 +1849,16 @@ A continuant cannot have an occurrent as part: use 'participates in'. + c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p. Chris Mungall has function in RO_0000053 some (RO_0000054 only (BFO_0000050 some ?Y)) + RO:0002216 + uberon + capable_of_part_of + capable_of_part_of + capable of part of capable of part of @@ -1331,6 +1879,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. + x actively participates in y if and only if x participates in y and x realizes some active role Chris Mungall agent in @@ -1350,6 +1899,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. Chris Mungall has agent + has active participant obsolete has active participant true @@ -1365,6 +1915,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. Chris Mungall Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends. + https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1 A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations. @@ -1381,6 +1932,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. + p has direct input c iff c is a participant in p, c is present at the start of p, and the state of c is modified during p. p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p. Chris Mungall consumes @@ -1390,13 +1942,31 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + + p has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p. + Chris Mungall + produces + + has output + + + + + + + @@ -1405,6 +1975,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. x has developmental contribution from y iff x has some part z such that z develops from y Chris Mungall + RO:0002254 + uberon + has_developmental_contribution_from + has_developmental_contribution_from + has developmental contribution from has developmental contribution from @@ -1422,8 +1997,13 @@ A continuant cannot have an occurrent as part: use 'participates in'. inverse of has developmental contribution from Chris Mungall + RO:0002255 + uberon + developmentally_contributes_to + developmentally_contributes_to developmentally contributes to + developmentally_contributes_to @@ -1440,7 +2020,12 @@ A continuant cannot have an occurrent as part: use 'participates in'. false Chris Mungall In general you should not use this relation to make assertions - use one of the more specific relations below this one + RO:0002258 + uberon + developmentally_preceded_by + developmentally_preceded_by This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from + developmentally preceded by developmentally preceded by @@ -1456,6 +2041,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision. c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes. + c involved in regulation of p if c enables 'p' and p' causally upstream of p acts upstream of @@ -1471,6 +2057,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway. + c acts upstream of or within p if c is enables 'p' and p' causally upstream of or within p c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process. affects acts upstream of or within @@ -1491,12 +2078,47 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + + + p results in the developmental progression of s iff p is a developmental process and s is an anatomical structure and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss). + This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint. + Chris Mungall + results_in_developmental_progression_of + results in developmental progression of + + + + + + + + + + + + an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists. + every "endocardial cushion formation" (GO:0003272) results_in_formation_of some "endocardial cushion" (UBERON:0002062) + + Chris Mungall + GOC:mtg_berkeley_2013 + results_in_formation_of + results in formation of + + + + + cjm cjm holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y causally upstream of, positive effect @@ -1510,6 +2132,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. + cjm cjm holds between x and y if and only if x is causally upstream of y and the progression of x decreases the frequency, rate or extent of y causally upstream of, negative effect @@ -1572,6 +2195,33 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity. + Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity. + eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to "ribosome binding". And all three are part_of an eIF2 complex + We would like to say + +if and only if + exists c', p' + c part_of c' and c' capable_of p + and + c capable_of p' and p' part_of p +then + c contributes_to p + +However, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction. + Chris Mungall + http://www.geneontology.org/GO.annotation.conventions.shtml#contributes_to + In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. + contributes to + + + + @@ -1605,6 +2255,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities. Chris Mungall This is a grouping relation that collects relations used for the purpose of connecting structure and function + RO:0002328 + uberon + functionally_related_to + functionally_related_to + functionally related to functionally related to @@ -1621,6 +2276,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. this relation holds between c and p when c is part of some c', and c' is capable of p. Chris Mungall false + RO:0002329 + uberon + part_of_structure_that_is_capable_of + part_of_structure_that_is_capable_of + part of structure that is capable of part of structure that is capable of @@ -1663,6 +2323,11 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + inverse of enables Chris Mungall enabled by @@ -1710,6 +2375,45 @@ A continuant cannot have an occurrent as part: use 'participates in'. + + + + + + An organism that is a member of a population of organisms + is member of is a mereological relation between a item and a collection. + is member of + member part of + SIO + + RO:0002350 + uberon + member_of + member_of + member of + member of + + + + + + + + + + has member is a mereological relation between a collection and an item. + SIO + + RO:0002351 + uberon + has_member + has_member + has member + has member + + + + @@ -1717,13 +2421,66 @@ A continuant cannot have an occurrent as part: use 'participates in'. inverse of has input Chris Mungall + RO:0002352 + uberon + input_of + input_of + input of input of + + + + + + inverse of has output + Chris Mungall + RO:0002353 + uberon + output_of + + + output_of + output of + output of + + + + + + + + + Chris Mungall + formed as result of + + + + + + + + + + + + + + + A lump of clay and a statue + x spatially_coextensive_with y if and inly if x and y have the same location + Chris Mungall + This relation is added for formal completeness. It is unlikely to be used in many practical scenarios + spatially coextensive with + + + + @@ -1743,8 +2500,14 @@ A continuant cannot have an occurrent as part: use 'participates in'. + x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y Chris Mungall + RO:0002385 + uberon + has_potential_to_developmentally_contribute_to + has_potential_to_developmentally_contribute_to + has potential to developmentally contribute to has potential to developmentally contribute to @@ -1755,8 +2518,14 @@ A continuant cannot have an occurrent as part: use 'participates in'. + x has the potential to develop into y iff x develops into y or if x is capable of developing into y x has the potential to develop into y iff x develops into y or if x is capable of developing into y Chris Mungall + RO:0002387 + uberon + has_potential_to_develop_into + has_potential_to_develop_into + has potential to develop into has potential to develop into @@ -1767,8 +2536,14 @@ A continuant cannot have an occurrent as part: use 'participates in'. + x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y Chris Mungall + RO:0002388 + uberon + has_potential_to_directly_develop_into + has_potential_to_directly_develop_into + has potential to directly develop into has potential to directly develop into @@ -1804,6 +2579,7 @@ A continuant cannot have an occurrent as part: use 'participates in'. + This relation groups causal relations between material entities and causal relations between processes This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. @@ -1899,6 +2675,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different + c involved in regulation of p if c is involved in some 'p' and p' regulates some p c involved in regulation of p if c is involved in some p' and p' regulates some p Chris Mungall involved in regulation of @@ -1971,11 +2748,13 @@ Each of these 3 primitives can be composed to yield a cross-product of different A protein that enables activity in a cytosol. + c executes activity in d if and only if c enables p and p occurs_in d c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure. Chris Mungall executes activity in enables activity in + enables activity in is active in @@ -2022,6 +2801,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different + An interaction relationship in which the two partners are molecular entities and are executing molecular processes that are directly causally connected. An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other. Chris Mungall binds @@ -2056,9 +2836,11 @@ Each of these 3 primitives can be composed to yield a cross-product of different Holds between molecular entities A and B where A can physically interact with B and in doing so regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. + Holds between molecular entities a and b when the execution of a activates or inhibits the activity of b Chris Mungall molecularly controls activity directly regulates activity of + molecularly controls @@ -2073,10 +2855,12 @@ Each of these 3 primitives can be composed to yield a cross-product of different Holds between molecular entities A and B where A can physically interact with B and in doing so negatively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B. + Holds between molecules a and b if and only if a executes a process that directly diminishes a process executed by b. Chris Mungall inhibits molecularly decreases activity of activity directly negatively regulates activity of + molecularly decreases activity of @@ -2091,10 +2875,12 @@ Each of these 3 primitives can be composed to yield a cross-product of different Holds between molecular entities A and B where A can physically interact with B and in doing so positively regulates a process that B is capable of. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B. + Holds between molecules a and b if and only if a executes a process that directly activates a process executed by b. Chris Mungall activates molecularly increases activity of activity directly positively regulates activity of + molecularly increases activity of @@ -2102,8 +2888,10 @@ Each of these 3 primitives can be composed to yield a cross-product of different + Chris Mungall This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning. + helper property helper property (not for use in curation) @@ -2117,10 +2905,16 @@ Each of these 3 primitives can be composed to yield a cross-product of different 'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate' x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y. + x composed_primarily_of y iff: more than half of the mass of x is made from parts of y Chris Mungall + RO:0002473 + uberon + RO:0002473 + composed_primarily_of + composed_primarily_of composed primarily of @@ -2169,6 +2963,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different A relationship between a material entity and a process where the material entity has some causal role that influences the process + causal agent in causal agent in process @@ -2214,6 +3009,73 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + + + + + A coral reef environment is determined by a particular coral reef + s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s. + The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future + Chris Mungall + + determined by (system to material entity) + Chris Mungall + Pier Buttigieg + Chris Mungall + Pier Buttigieg + + determined by + + + + + + + + + inverse of determined by + Chris Mungall + determines (material entity to system) + + + determines + + + + + + + + + + + + + + + + s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w. + Chris Mungall + + determined by part of + + + + + + + + + true + + + + @@ -2371,18 +3233,33 @@ Each of these 3 primitives can be composed to yield a cross-product of different Inverse of 'causal agent in process' + Inverse of 'causal agent in' + has causal agent process has causal agent + + + + A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes. + Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect. + obsolete related via dependence to + related via dependence to + true + + + + Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2. + Process(P1) directly regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2. directly positively regulates (process to process) @@ -2397,6 +3274,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different Process(P1) directly negatively regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2. + Process(P1) directly regulates process(P2) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P1 directly negatively regulates P2. directly negatively regulates (process to process) @@ -2405,6 +3283,52 @@ Each of these 3 primitives can be composed to yield a cross-product of different + + + + + + + + + + + + + + a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix. + Melissa Haendel + RO:0003000 + uberon + produces + + produces + Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue. + produces + produces + + + + + + + + + + + a produced_by b iff some process that occurs_in b has_output a. + Melissa Haendel + RO:0003001 + uberon + produced_by + + produced_by + produced by + produced_by + + + + @@ -2835,9 +3759,18 @@ Association is weaker than correlation or proportionality. These relations may b + + + + entity + + + + + @@ -2860,6 +3793,7 @@ Association is weaker than correlation or proportionality. These relations may b + @@ -2889,9 +3823,26 @@ Association is weaker than correlation or proportionality. These relations may b + A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything. + b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]) independent continuant + + + + b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002]) + + + + + + + + + + spatial region + @@ -2900,8 +3851,32 @@ Association is weaker than correlation or proportionality. These relations may b An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. + p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) process + + + + p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) + + + + + + + + + + + + + + + + + A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances. + realizable entity + @@ -2930,9 +3905,54 @@ Association is weaker than correlation or proportionality. These relations may b + A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same. + b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n &gt; 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i &lt; j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004]) + b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]) specifically dependent continuant + + + + b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]) + + + + + + + + + + object aggregate + + + + + + + + + site + + + + + + + + + + + + + + + A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time. + b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001]) + + generically dependent continuant + @@ -2940,12 +3960,34 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time. material entity + + + + + + + + + + + immaterial entity + + + + @@ -2961,6 +4003,7 @@ Association is weaker than correlation or proportionality. These relations may b + anatomical structure connected anatomical structure @@ -2991,7 +4034,11 @@ Association is weaker than correlation or proportionality. These relations may b - + + Material anatomical entity that is a member of an individual species or is a viral or viroid particle. + organism or virus + Melissa Haendel + 9/18/11 organism or virus or viroid @@ -3006,9 +4053,90 @@ Association is weaker than correlation or proportionality. These relations may b + + + + A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances. + chemical entity + chebi_ontology + CHEBI:24431 + + chemical entity + + + + + chemical entity + UniProt + + + + - + + + In general, a mineral is a chemical substance that is normally crystalline formed and has been formed as a result of geological processes. The term also includes metamict substances (naturally occurring, formerly crystalline substances whose crystallinity has been destroyed by ionising radiation) and can include naturally occurring amorphous substances that have never been crystalline ('mineraloids') such as georgite and calciouranoite as well as substances formed by the action of geological processes on bigenic compounds ('biogenic minerals'). + mineral + chebi_ontology + Minerale + minerales + minerals + mineraux + CHEBI:46662 + + mineral + + + + + mineral + ChEBI + + + + + Minerale + ChEBI + + + + + minerales + ChEBI + + + + + minerals + ChEBI + + + + + mineraux + ChEBI + + + + + + + + + A chemical substance is a portion of matter of constant composition, composed of molecular entities of the same type or of different types. + chebi_ontology + Chemische Substanz + CHEBI:59999 + + chemical substance + + + + + Chemische Substanz + ChEBI + @@ -3022,6 +4150,508 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + + + + + + + + + + + + A material entity which determines an environmental system. + environmental feature + + + + + A material entity which determines an environmental system. + DOI:10.1186/2041-1480-4-43 + NM:nm + ORCID:0000-0002-4366-3088 + + + + + + + + + A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system. + portion of environmental material + environmental material + + + + + A portion of environmental material is a fiat object which forms the medium or part of the medium of an environmental system. + DOI:10.1186/2041-1480-4-43 + MA:ma + ORCID:0000-0002-4366-3088 + URL:http://ontology.buffalo.edu/smith/articles/niches.html + + + + + + + + + A system which has the disposition to environ one or more material entities. + environment + environmental system + + + + + A system which has the disposition to environ one or more material entities. + DOI:10.1186/2041-1480-4-43 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An anthropogenic environment is an environmental system which is the product of human activity. + anthropogenic environment + + + + + + + + + + + + + + + + + + + + + + + + An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition. + natural environment + + + + + An environmental system in which minimal to no anthropisation has occurred and non-human agents are the primary determinants of the system's dynamics and composition. + https://en.wikipedia.org/wiki/Anthropization + https://en.wikipedia.org/wiki/Natural_environment + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A process during which a natural environmental system is altered by human action. + anthropization + anthropisation + + + + + A process during which a natural environmental system is altered by human action. + https://en.wikipedia.org/wiki/Anthropization + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system which is determined by materials bearing roughly homogeneous qualities. + environmental system determined by a quality + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system within which an environmental material strongly influences the system's composition and properties. + environmental system determined by a material + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system which is determined by a living organism. + host-associated environment + environmental system determined by an organism + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system determined by an animal. + animal environment + Metazoan-associated environment + animal-associated environment + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system determined by part of a living or dead animal, or a whole small animal. + environment associated with an animal part or small animal + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system determined by part of a living or dead plant, or a whole small plant. + environment associated with a plant part or small plant + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental system which includes both living and non-living components. + ecosystem + + + + + An environmental system which includes both living and non-living components. + https://en.wikipedia.org/wiki/Ecosystem + + + + + + + + + + + + + + + + + + + + + + + A process in which includes the components of an environmental system as participants. + environmental system process + + + + + + + + + + + + + + + + + + + + + + + + + + An environmental process which is driven by the action of humans. + anthropogenic environmental process + + + + @@ -3091,6 +4721,7 @@ Association is weaker than correlation or proportionality. These relations may b + receptor activity true @@ -3569,6 +5200,7 @@ Association is weaker than correlation or proportionality. These relations may b A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. + Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. janelomax 2012-09-19T15:05:24Z GO:0000004 @@ -3599,6 +5231,13 @@ Association is weaker than correlation or proportionality. These relations may b A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence. GOC:pdt + + + + Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end. + GOC:go_curators + GOC:isa_complete + @@ -3908,6 +5547,44 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + + + + + + + + + + + + + Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity. + regulation of receptor activity + biological_process + GO:0010469 + regulation of signaling receptor activity + + + + + Any process that modulates the frequency, rate or extent of a signaling receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity. + GOC:dph + GOC:tb + + + + @@ -4095,8 +5772,10 @@ Association is weaker than correlation or proportionality. These relations may b + A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. + Wikipedia:Biological_membrane cellular_component GO:0016020 @@ -4109,6 +5788,7 @@ Association is weaker than correlation or proportionality. These relations may b membrane + membrane @@ -5011,6 +6691,44 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. + rfoulger + 2011-08-01T02:45:27Z + GO:0004872 + GO:0019041 + receptor activity + receptor activity involved in signal transduction + molecular_function + GO:0038023 + + + + + + + + signaling receptor activity + + + + + Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response. + GOC:bf + GOC:signaling + + + + + receptor activity involved in signal transduction + GOC:bf + + + + @@ -5151,7 +6869,7 @@ Association is weaker than correlation or proportionality. These relations may b A prolongation or process extending from a cell, e.g. a flagellum or axon. GOC:jl - http://www.cogsci.princeton.edu/~wn/ + http://www.cogsci.princeton.edu/~wn/ @@ -6471,6 +8189,27 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + A compound molecular function in which an effector function is controlled by one or more regulatory components. + molecular_function + GO:0060089 + + + molecular transducer activity + + + + + A compound molecular function in which an effector function is controlled by one or more regulatory components. + GOC:dos + GOC:pdt + + + + @@ -7583,6 +9322,870 @@ Association is weaker than correlation or proportionality. These relations may b + + + + + + + + + + + + + + + + + + + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity. + rfoulger + 2010-12-02T09:28:47Z + negative regulation of receptor activity + biological_process + GO:2000272 + negative regulation of signaling receptor activity + + + + + Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity. + GOC:obol + + + + + + + + + + + + + + + + + + + + + + + + + + + Any process that activates or increases the frequency, rate or extent of signaling receptor activity. + rfoulger + 2010-12-02T09:28:50Z + biological_process + GO:2000273 + positive regulation of signaling receptor activity + + + + + Any process that activates or increases the frequency, rate or extent of signaling receptor activity. + GOC:obol + + + + + + + + + data item + + + + + + + + + information content entity + + + + + + + + + + + + + + + + + + + + + + + + curation status specification + + The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. + Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting) + PERSON:Bill Bug + GROUP:OBI:<http://purl.obolibrary.org/obo/obi> + OBI_0000266 + curation status specification + + + + + + + + + data about an ontology part is a data item about a part of an ontology, for example a term + Person:Alan Ruttenberg + data about an ontology part + + + + + + + + + + + + + + + + + + + + obsolescence reason specification + + The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. + The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology. + PERSON: Alan Ruttenberg + PERSON: Melanie Courtot + obsolescence reason specification + + + + + + + + + + + + + + + + + + The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are "natural kinds" and the latter arbitrary collections of entities. + A denotator type indicates how a term should be interpreted from an ontological perspective. + Alan Ruttenberg + Barry Smith, Werner Ceusters + denotator type + + + + + + + + + all + root + + + + + all + + + + + + all + + + + + + + + + + Teleostomi + + + + + + + + + bony vertebrates + Euteleostomi + + + + + bony vertebrates + + + + + + + + + + biota + cellular organisms + + + + + biota + + + + + + biota + + + + + + + + + + Dipnotetrapodomorpha + + + + + + + + + Boreotheria + Boreoeutheria + + + + + Boreotheria + + + + + + + + + + Homo/Pan/Gorilla group + Homininae + + + + + Homo/Pan/Gorilla group + + + + + + + + + + eucaryotes + eukaryotes + Eucarya + Eucaryotae + Eukarya + Eukaryotae + eukaryotes + Eukaryota + + + + + eucaryotes + + + + + + eucaryotes + + + + + + eukaryotes + + + + + + eukaryotes + + + + + + Eucarya + + + + + + Eucarya + + + + + + Eucaryotae + + + + + + Eucaryotae + + + + + + Eukarya + + + + + + Eukarya + + + + + + Eukaryotae + + + + + + Eukaryotae + + + + + + eukaryotes + + + + + + eukaryotes + + + + + + + + + + Euarchontoglires + + + + + + + + + Anthropoidea + Simiiformes + + + + + Anthropoidea + + + + + + + + + + ape + apes + Hominoidea + + + + + ape + + + + + + apes + + + + + + + + + + tetrapods + Tetrapoda + + + + + tetrapods + + + + + + + + + + amniotes + Amniota + + + + + amniotes + + + + + + + + + + Theria + Theria <Mammalia> + + + + + Theria + + + + + + + + + + Fungi/Metazoa group + opisthokonts + Opisthokonta + + + + + Fungi/Metazoa group + + + + + + opisthokonts + + + + + + + + + + metazoans + multicellular animals + Animalia + animals + Metazoa + + + + + metazoans + + + + + + multicellular animals + + + + + + Animalia + + + + + + animals + + + + + + + + + + Bilateria + + + + + + + + + deuterostomes + Deuterostomia + + + + + deuterostomes + + + + + + + + + + Haplorrhini + + + + + + + + + mammals + mammals + Mammalia + + + + + mammals + + + + + + mammals + + + + + + + + + + Eumetazoa + + + + + + + + + chordates + chordates + Chordata + + + + + chordates + + + + + + chordates + + + + + + + + + + Vertebrata + vertebrates + vertebrates + Vertebrata <Metazoa> + + + + + Vertebrata + + + + + + vertebrates + + + + + + vertebrates + + + + + + + + + + Gnathostomata + jawed vertebrates + Gnathostomata <vertebrate> + + + + + Gnathostomata + + + + + + jawed vertebrates + + + + + + + + + + Sarcopterygii + + + + + + + + + Craniata + Craniata <chordata> + + + + + Craniata + + + + + + + + + + eutherian mammals + placental mammals + placentals + Placentalia + placentals + Eutheria + + + + + eutherian mammals + + + + + + placental mammals + + + + + + placentals + + + + + + Placentalia + + + + + + placentals + + + + + + + + + + primate + Primata + primates + Primates + + + + + primate + + + + + + Primata + + + + + + primates + + + + + + + + + + Catarrhini + + + + + + + + + great apes + Pongidae + Hominidae + + + + + great apes + + + + + + Pongidae + + + + + + + + + + humans + Homo + + + + + humans + + + + + + + + + + human + man + humans + Homo sapiens + + + + + human + + + + + + man + + + + + @@ -7601,6 +10204,7 @@ Association is weaker than correlation or proportionality. These relations may b A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities quality (PATO) PATO:0000072 + trait quality PATO:0000001 quality @@ -8364,7 +10968,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. + A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. quality PATO:0000051 @@ -8373,7 +10977,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. + A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. PATOC:GVG @@ -8651,7 +11255,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. + A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. quality PATO:0000069 @@ -8660,7 +11264,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. + A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average. PATOC:GVG @@ -9271,7 +11875,7 @@ Association is weaker than correlation or proportionality. These relations may b - A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. + A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. quality PATO:0000117 @@ -9281,7 +11885,7 @@ Association is weaker than correlation or proportionality. These relations may b - A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. + A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. WordNet:WordNet @@ -15984,7 +18588,7 @@ Association is weaker than correlation or proportionality. These relations may b - A size quality which is relatively low. + A size quality which is relatively low. hypoplasia underdeveloped @@ -15999,7 +18603,7 @@ Association is weaker than correlation or proportionality. These relations may b - A size quality which is relatively low. + A size quality which is relatively low. PATOC:GVG @@ -48741,7 +51345,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality that has a value that is decreased compared to normal or average. + A quality that has a value that is decreased compared to normal or average. George Gkoutos 2011-06-16T06:40:15Z @@ -48752,7 +51356,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality that has a value that is decreased compared to normal or average. + A quality that has a value that is decreased compared to normal or average. PATOC:GVG @@ -48807,7 +51411,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality of an object that has a value that is decreased compared to normal or average. + A quality of an object that has a value that is decreased compared to normal or average. George Gkoutos 2011-06-16T06:51:54Z @@ -48818,7 +51422,7 @@ Association is weaker than correlation or proportionality. These relations may b - A quality of an object that has a value that is decreased compared to normal or average. + A quality of an object that has a value that is decreased compared to normal or average. PATOC:GVG @@ -55906,8 +58510,8 @@ height'). An oriented quality inhering in a bearer by virtue of the bearer's being abnormally placed or arranged. - 2018-05-21T22:44:38Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040000 heterotaxic @@ -55926,8 +58530,8 @@ height'). Shaped like a ring - 2018-05-24T03:56:53Z + http://orcid.org/0000-0001-5208-3432 annular quality PATO:0040001 @@ -55947,8 +58551,8 @@ height'). A positional quality inhering in a bearer by virtue of some aspect of that bearer beginning from a position on another entity. - 2018-05-24T04:10:53Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040002 @@ -55962,8 +58566,8 @@ height'). The ability of a pathogen to produce an infectious disease or disorder in an another organism. - 2018-08-02T04:24:52Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040003 pathogenicity @@ -55982,8 +58586,8 @@ height'). A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness. - 2018-08-02T04:39:30Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040004 plush @@ -56003,8 +58607,8 @@ height'). An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally. - 2018-11-12T22:54:16Z + http://orcid.org/0000-0001-5208-3432 posteroventrally oriented quality PATO:0040005 @@ -56024,8 +58628,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown. - 2018-11-12T18:09:59Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040006 crown like @@ -56044,8 +58648,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell. - 2018-11-12T18:12:47Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040007 shell shaped @@ -56064,8 +58668,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band. - 2018-11-12T18:15:10Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040008 fringed @@ -56085,8 +58689,8 @@ height'). A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl. - 2018-11-12T18:17:01Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040009 bowl shaped @@ -56105,8 +58709,8 @@ height'). Mobility relative to a second entity. - 2018-11-12T18:20:08Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040010 For example, distinct anteroposterior mobility of palatine relative to mesethmoid. @@ -56126,8 +58730,8 @@ height'). Immobility relative to a second entity. - 2018-11-12T18:21:07Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040011 For example: distinct anteroposterior immobility of palatine relative to mesethmoid. @@ -56147,8 +58751,8 @@ height'). A shape that is in the form of a plug, being tube-like and expanded on one end. - 2018-11-12T18:24:41Z + http://orcid.org/0000-0001-5208-3432 plug like quality PATO:0040012 @@ -56168,8 +58772,8 @@ height'). An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially. - 2018-11-12T18:27:57Z + http://orcid.org/0000-0001-5208-3432 dorsomedially directed quality PATO:0040013 @@ -56189,8 +58793,8 @@ height'). A shape that is in the form of a narrow strip encircling an object. - 2018-11-12T18:31:51Z + http://orcid.org/0000-0001-5208-3432 band like band-like strip like @@ -56214,8 +58818,8 @@ height'). A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling that of a trough, being narrow, long, and boxlike in shape. - 2018-11-12T18:35:51Z + http://orcid.org/0000-0001-5208-3432 trough like trough-like trough-shaped @@ -56238,8 +58842,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides. - 2018-11-12T18:39:48Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040016 pentagonal @@ -56259,8 +58863,8 @@ height'). A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal. - 2018-11-12T19:01:51Z + http://orcid.org/0000-0001-5208-3432 dysgenesis quality PATO:0040017 @@ -56280,8 +58884,8 @@ height'). Fibrosis is the formation of excess fibrous connective tissue in an organ or tissue in a reparative or reactive process. - 2018-11-12T23:16:17Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040019 fibrotic @@ -56300,8 +58904,8 @@ height'). Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal. - 2018-11-16T22:52:49Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040020 spayed female @@ -56314,7 +58918,7 @@ height'). The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.. - + http://orcid.org/0000-0001-5208-3432 quality PATO:0040021 unpaired @@ -56333,8 +58937,8 @@ height'). A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape. - 2018-11-19T21:49:07Z + http://orcid.org/0000-0001-5208-3432 quality PATO:0040022 flared @@ -56347,8 +58951,8 @@ height'). An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed distomedially, ie, pertaining to an inside aspect, but also farther away from the center of the body. - 2018-11-19T21:54:33Z + http://orcid.org/0000-0001-5208-3432 disto-medial orientation distomedial quality @@ -56369,7 +58973,7 @@ height'). The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism. - + http://orcid.org/0000-0001-5208-3432 paired quality PATO:0040024 @@ -56389,7 +58993,7 @@ height'). A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present. - + http://orcid.org/0000-0001-5208-3432 quality PATO:0040025 lesioned @@ -59176,15 +61780,434 @@ height'). + + + + + + + + + + + + + 2 + + + + + + + + + + + + + + Examples include: population, community, species (meaning the collection of organisms that makes up a species, not the taxonomic rank), and family. + + A material entity that consists of two or more organisms, viruses, or viroids. + A material entity that consists of two or more organisms, viruses, or viroids. + group of organism + organism collection + May be of the same or different species. + collection of organisms + collection of organisms + + + + - + + + + This a general term that can include every organism of a species living in an area or any subset of them. Subclasses can be more specific as needed. + + A collection of organisms, all of the same species, that live in the same place. + ISBN:0878932739 + It is sometimes difficult to define the physical boundaries of a population. In the case of sexually reproducing organisms, the individuals within a population have the potential to reproduce with one another during the course of their lifetimes. 'Community', as often used to describe a group of humans, is a type of population. + +Classes for population already exist in IDO ('organism population', IDO_0000509) and OBI ('population', OBI_0000181). The definitions should be standardized across OBO Foundry ontologies and only one term used. + population of organisms + + + + + + + + + + + + + + 2 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A community of at least two different species, living in a particular area. Must have at least two populations of different species as members. + Not sure if the equivalancy axiom specifies that both populations are located in the same site. + multispecies community + ISBN:0865423504 + Ecological community is defined broadly here, but includes both ecological interactions (inherited from parent term community) and spatial co-existence. It may be used to describe every organisms living in an area, but is often used to refer only to organisms of a particular taxon or guild (e.g., the plant community, the insect community, the herbivore community). The word community, as it often used to describe a group of humans living together, is a type of single-species collection of organisms, not an ecological community. + ecological community + - + + + + + + + + + + + + + + + + + + + + + A quality that inheres in a biological population. + See Chris's comments on population qualities at: http://code.google.com/p/popcomm-ontology/issues/detail?id=4. These may not belong under BFO:quality. May be better to call them population characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2. + Includes qualities like population size, population growth rate, carrying capacity, immigration rate, emigration rate, fecundity, and death rate. A population quality may depend on the qualities of individual organisms in the population, but cannot be measured or described for a single organism. This term may be replaced by a PATO term. + quality of a population + + + + + + + + + + + + + + + + + + + + + + + + + + + A quality that inheres in a community. + These may not belong under BFO:quality. May be better to call them community characteristics, and classify as specifically dependent continuants. Need to look at process profiles in BFO2. + Includes qualities like diversity, species richness, stability, resilience, community structure, number of trophic levels. A community quality may depend on the qualities of individual organism in the community, but cannot be measured or described for a single individual. + quality of an ecological community + + + + + + + + + + A collection of organisms that has as parts every organism of given species and no organisms of any other species. + At the moment there is no way to specify in an OWL axiom that the collection includes every individual of a species. This should be added, if possible. + This term is neutral with respect to which organisms are included in a species. Membership will depend on the species concept and the taxonomic assertions used to define the species. These criteria must be specified by the user. + species as a collection of organisms + + + + + + + + + + + + + + + + + + + + 1 + + + + + + + 2 + + + + + + + + A material entity that has as parts two or more organisms, viruses, or viroids of the same species and no members of any other species. + collection of organisms of the same species + single-species collection of organisms + + + + + + + + + + + + + + + + + + 2 + + + + + + + + + + + + + + A collection of organisms of the same species that has as members only humans. + human community + human population + collection of humans + + + + + + + + + + A collection of organisms of the same species whose members are all either genealogically related to each other or have mated with each other. + Biological or social relations are covered by RO_0002437 (biotically interacts with), but that relations does provide an easy way to specify that two entities are interacting with each other (participating in the same interaction). Until that axiom is specified, the logical definition of this term is incomplete. + These relations can include shared values, occupying the same spatial regkion. A community be be a single species collection of organsisms (as in a human community, which is also a type of population) or a or multi-species collection of organisms (as in an ecological community). + community + + + + + + + + + + A collection of organisms that consists of two or more organisms from at least two species. + Need to add axiom to specify that it has at a mimum members of two different species, but not sure how to specify that. Can't say "('has member' only ('member of' min 2 'species as a collection of organisms'))". + + multi-species collection of organisms + + + + + + + + + + + + + + + + + + A material entity that is one or more organisms, viruses or viroids. + organismal entity + + + + + + + + + A plant structure (PO:0005679) which is a whole organism. + genet (broad) + ramet (broad) + planta entera (Spanish, exact) + 植物体全体 (Japanese, exact) + bush (narrow) + frutex (narrow) + frutices (narrow) + gametophyte (narrow) + herb (narrow) + liana (narrow) + prothalli (narrow) + prothallium (narrow) + prothallus (narrow) + seedling (narrow) + shrub (narrow) + sporophyte (narrow) + suffrutex (narrow) + suffrutices (narrow) + tree (narrow) + vine (narrow) + woody clump (narrow) + clonal colony (related) + colony (related) + whole plant + + + + + + + + + An anatomical structure that is or was part of a plant, or was derived from a part of a plant. + estructura vegetal (Spanish, exact) + 植物 構造 (Japanese, exact) + plant structure + + + + + + + + + An anatomical entity that is or was part of a plant. + entidad anat&#243mica vegetal (Spanish, exact) + 植物 解剖学（形態）的実体 (Japanese, exact) + plant anatomical entity + + + + + + + + + A material entity consisting of multiple components that are causally integrated. + May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43 + Chris Mungall + http://www.jbiomedsem.com/content/4/1/43 + system + + + + + + + + + Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. + + AAO:0010841 + AEO:0000000 + BILA:0000000 + BIRNLEX:6 + CARO:0000000 + EHDAA2:0002229 + FBbt:10000000 + FBbt_root:00000000 + FMA:62955 + HAO:0000000 + MA:0000001 + NCIT:C12219 + TAO:0100000 + TGMA:0001822 + UMLS:C1515976 + WBbt:0000100 + XAO:0000000 + ZFA:0100000 + uberon + UBERON:0001062 + + anatomical entity + + + + + Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. + + FMA:62955 + + + + + UMLS:C1515976 + ncithesaurus:Anatomic_Structure_System_or_Substance + + + + + + + + + + + + + + + + @@ -59199,15 +62222,200 @@ height'). + + + + + example to be eventually removed + + + + + + + + + The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job + Person:Alan Ruttenberg + failed exploratory term + + + + + + + + + Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete. + metadata complete + + + + + + + + + term created to ease viewing/sort terms for development purpose, and will not be included in a release + organizational term + + + + + + + + + + Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release." + ready for release + + + + + + + + + Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors. + metadata incomplete + + + + + + + + + Nothing done yet beyond assigning a unique class ID and proposing a preferred term. + uncurated + + + + + + All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor. pending final vetting + + + + + Core is an instance of a grouping of terms from an ontology or ontologies. It is used by the ontology to identify main classes. + PERSON: Alan Ruttenberg + PERSON: Melanie Courtot + core + + + + + + + + + placeholder removed + + + + + + + + + An editor note should explain what were the merged terms and the reason for the merge. + terms merged + + + + + + + + + This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use. + term imported + + + + + + + + + This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created. + term split + + + + + + + + + Hard to give a definition for. Intuitively a "natural kind" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents. + Alan Ruttenberg + A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf + universal + + + + + + + + + A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal + "definitions", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal. + Alan Ruttenberg + defined class + + + + + + + + + A named class expression is a logical expression that is given a name. The name can be used in place of the expression. + named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions + Alan Ruttenberg + named class expression + + + + + + + + + Terms with this status should eventually replaced with a term from another ontology. + Alan Ruttenberg + group:OBI + to be replaced with external ontology term + + + + + + + + + + A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues. + Alan Ruttenberg + group:OBI + requires discussion + + + + @@ -59443,6 +62651,14 @@ This interpretation is *not* the same as an at-all-times relation + + + + + + + + @@ -59453,6 +62669,28 @@ This interpretation is *not* the same as an at-all-times relation + + + + + + + + + + + + + + + + + + + + + + @@ -59470,19 +62708,19 @@ This interpretation is *not* the same as an at-all-times relation - + - + - + - + @@ -59589,10 +62827,9 @@ This interpretation is *not* the same as an at-all-times relation - - - - + + + @@ -59600,10 +62837,9 @@ This interpretation is *not* the same as an at-all-times relation - - - - + + + @@ -59611,9 +62847,10 @@ This interpretation is *not* the same as an at-all-times relation - - + + + @@ -59621,9 +62858,10 @@ This interpretation is *not* the same as an at-all-times relation - - - + + + + @@ -59650,6 +62888,65 @@ This interpretation is *not* the same as an at-all-times relation + + true + GP(X) part_of complex(Y) enables MF(Z) -> X contributes_to Z + contrib to MF + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z), e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity' @@ -59660,9 +62957,10 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + + @@ -59671,9 +62969,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + @@ -59681,10 +62979,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - + + - @@ -59719,9 +63016,10 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + + @@ -59740,10 +63038,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - - + + + @@ -60123,9 +63420,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + @@ -60134,9 +63431,9 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - - + + + diff --git a/src/ontology/merged-pato-edit.obo b/src/ontology/merged-pato-edit.obo index 452283b3..be7a5664 100644 --- a/src/ontology/merged-pato-edit.obo +++ b/src/ontology/merged-pato-edit.obo @@ -14,6 +14,7 @@ subsetdef: scalar_slim "Scalar slim" subsetdef: value_slim "Value slim" default-namespace: quality ontology: pato +owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(Class())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\nDeclaration(ObjectProperty())\n\n\nEquivalentClasses(ObjectComplementOf(ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectSomeValuesFrom( ObjectSomeValuesFrom( )) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectExactCardinality(2 ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectExactCardinality(1 ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectMinCardinality(2 ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectMinCardinality(2 ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectMinCardinality(2 ))\nEquivalentClasses(ObjectSomeValuesFrom( ) ObjectExactCardinality(1 ))\nSubClassOf(ObjectSomeValuesFrom( ) )\nSubClassOf(ObjectSomeValuesFrom( ) )\nSubClassOf(ObjectSomeValuesFrom( ) )\nSubClassOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nSubClassOf(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\nSubClassOf(ObjectSomeValuesFrom( ) )\nDisjointClasses(ObjectSomeValuesFrom( ) ObjectSomeValuesFrom( ))\n) [Term] id: PATO:0000000 @@ -14086,6 +14087,7 @@ id: PATO:0001995 name: organismal quality def: "A quality that inheres in an entire organism or part of an organism." [PATOC:CJM] is_a: PATO:0001241 ! physical object quality +disjoint_from: PATO:0002003 ! population quality [Term] id: PATO:0001997 @@ -20199,8 +20201,8 @@ id: PATO:0040000 name: heterotaxic def: "An oriented quality inhering in a bearer by virtue of the bearer's being abnormally placed or arranged." [http://medical-dictionary.thefreedictionary.com/heterotaxic] is_a: PATO:0000625 ! inverted -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-05-21T22:44:38Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040001 @@ -20208,8 +20210,8 @@ name: ring-shaped def: "Shaped like a ring" [https://orcid.org/0000-0002-6601-2165] synonym: "annular" EXACT [] is_a: PATO:0000947 ! elliptic -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T03:56:53Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040002 @@ -20217,24 +20219,24 @@ name: originates from def: "A positional quality inhering in a bearer by virtue of some aspect of that bearer beginning from a position on another entity." [] subset: relational_slim is_a: PATO:0000140 ! position -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T04:10:53Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040003 name: pathogenicity def: "The ability of a pathogen to produce an infectious disease or disorder in an another organism." [https://orcid.org/0000-0001-8941-3984] is_a: PATO:0001995 ! organismal quality -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:24:52Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040004 name: plush def: "A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness." [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0003-4606-0597] is_a: PATO:0000150 ! texture -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:39:30Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040005 @@ -20242,40 +20244,40 @@ name: posteroventral orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally." [https://orcid.org/0000-0003-3162-7490] synonym: "posteroventrally oriented" EXACT [] is_a: PATO:0000133 ! orientation -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T22:54:16Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040006 name: crown like def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:09:59Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040007 name: shell shaped def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:12:47Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040008 name: fringed def: "A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/fringe] is_a: PATO:0002267 ! edge shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:15:10Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040009 name: bowl shaped def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0002008 ! concave 3-D shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:17:01Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040010 @@ -20283,8 +20285,8 @@ name: mobile relative to def: "Mobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] comment: For example, distinct anteroposterior mobility of palatine relative to mesethmoid. is_a: PATO:0000004 ! mobility -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:20:08Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040011 @@ -20292,8 +20294,8 @@ name: immobile relative to def: "Immobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] comment: For example: distinct anteroposterior immobility of palatine relative to mesethmoid. is_a: PATO:0000004 ! mobility -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:21:07Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040012 @@ -20301,8 +20303,8 @@ name: plug shaped def: "A shape that is in the form of a plug, being tube-like and expanded on one end." [https://orcid.org/0000-0003-3162-7490] synonym: "plug like" EXACT [] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:24:41Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040013 @@ -20310,8 +20312,8 @@ name: dorsomedial orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially." [https://orcid.org/0000-0003-3162-7490] synonym: "dorsomedially directed" EXACT [] is_a: PATO:0000133 ! orientation -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:27:57Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040014 @@ -20322,8 +20324,8 @@ synonym: "band-like" EXACT [] synonym: "strip like" EXACT [] synonym: "strip-like" EXACT [] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:31:51Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040015 @@ -20333,16 +20335,16 @@ synonym: "trough like" EXACT [] synonym: "trough-like" EXACT [] synonym: "trough-shaped" EXACT [] is_a: PATO:0002008 ! concave 3-D shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:35:51Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040016 name: pentagonal def: "A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/pentagonal] is_a: PATO:0002006 ! 2-D shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:39:48Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040017 @@ -20350,39 +20352,39 @@ name: dysplastic growth def: "A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal." [https://www.cancer.gov/publications/dictionaries/cancer-terms/def/dysplasia] synonym: "dysgenesis" NARROW [] is_a: PATO:0001433 ! growth quality of occurrent -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T19:01:51Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040019 name: fibrotic def: "Fibrosis is the formation of excess fibrous connective tissue in an organ or tissue in a reparative or reactive process." [https://en.wikipedia.org/wiki/Fibrosis] is_a: PATO:0000025 ! composition -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T23:16:17Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040020 name: spayed female def: "Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal." [] is_a: PATO:0000383 ! female -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-16T22:52:49Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040021 name: unpaired def: "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0000467 ! present -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040022 name: flared def: "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape." [] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:49:07Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040023 @@ -20391,8 +20393,8 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having synonym: "disto-medial orientation" EXACT [] synonym: "distomedial" EXACT [] is_a: PATO:0000133 ! orientation -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:54:33Z xsd:dateTime +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040024 @@ -20400,14 +20402,14 @@ name: bilaterally paired def: "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism." [https://orcid.org/0000-0003-3162-7490] synonym: "paired" BROAD [] is_a: PATO:0000467 ! present -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040025 name: lesioned def: "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present." [NCIT:C3824] is_a: PATO:0000141 ! structure -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040026 diff --git a/src/ontology/ontologyterms.txt b/src/ontology/ontologyterms.txt index 97b568bc..4fa843f7 100644 --- a/src/ontology/ontologyterms.txt +++ b/src/ontology/ontologyterms.txt @@ -1,7 +1,11 @@ term -http://purl.obolibrary.org/obo/PATO_0001537 -http://purl.obolibrary.org/obo/PATO_0001538 -http://purl.obolibrary.org/obo/PATO_0001536 +http://purl.obolibrary.org/obo/PATO_0001402 +http://purl.obolibrary.org/obo/PATO_0001397 +http://purl.obolibrary.org/obo/PATO_0001411 +http://purl.obolibrary.org/obo/PATO_0001412 +http://purl.obolibrary.org/obo/PATO_0000141 +http://purl.obolibrary.org/obo/PATO_0001611 +http://purl.obolibrary.org/obo/PATO_0001303 http://purl.obolibrary.org/obo/PATO_0001807 http://purl.obolibrary.org/obo/PATO_0002305 http://purl.obolibrary.org/obo/PATO_0001806 @@ -10,51 +14,51 @@ http://purl.obolibrary.org/obo/PATO_0002303 http://purl.obolibrary.org/obo/PATO_0001241 http://purl.obolibrary.org/obo/PATO_0002300 http://purl.obolibrary.org/obo/PATO_0000085 -http://purl.obolibrary.org/obo/PATO_0002450 -http://purl.obolibrary.org/obo/PATO_0000048 -http://purl.obolibrary.org/obo/PATO_0001858 -http://purl.obolibrary.org/obo/PATO_0002076 +http://purl.obolibrary.org/obo/PATO_0001544 +http://purl.obolibrary.org/obo/PATO_0002440 +http://purl.obolibrary.org/obo/PATO_0001925 http://purl.obolibrary.org/obo/PATO_0001619 http://purl.obolibrary.org/obo/PATO_0001439 http://purl.obolibrary.org/obo/PATO_0001579 http://purl.obolibrary.org/obo/PATO_0001618 +http://purl.obolibrary.org/obo/PATO_0002339 +http://purl.obolibrary.org/obo/PATO_0000454 http://purl.obolibrary.org/obo/PATO_0001842 http://purl.obolibrary.org/obo/PATO_0000033 http://purl.obolibrary.org/obo/PATO_0000337 http://purl.obolibrary.org/obo/PATO_0000019 http://purl.obolibrary.org/obo/PATO_0000001 -http://purl.obolibrary.org/obo/PATO_0001904 -http://purl.obolibrary.org/obo/PATO_0000039 -http://purl.obolibrary.org/obo/PATO_0001774 -http://purl.obolibrary.org/obo/PATO_0000083 -http://purl.obolibrary.org/obo/PATO_0001529 -http://purl.obolibrary.org/obo/PATO_0001236 +http://purl.obolibrary.org/obo/PATO_0000461 +http://purl.obolibrary.org/obo/PATO_0002446 +http://purl.obolibrary.org/obo/PATO_0000052 http://purl.obolibrary.org/obo/PATO_0002001 http://purl.obolibrary.org/obo/PATO_0002083 http://purl.obolibrary.org/obo/PATO_0001555 http://purl.obolibrary.org/obo/PATO_0002002 http://purl.obolibrary.org/obo/PATO_0001999 -http://purl.obolibrary.org/obo/PATO_0000461 -http://purl.obolibrary.org/obo/PATO_0001425 -http://purl.obolibrary.org/obo/PATO_0000014 -http://purl.obolibrary.org/obo/PATO_0001829 -http://purl.obolibrary.org/obo/PATO_0001827 -http://purl.obolibrary.org/obo/PATO_0001650 -http://purl.obolibrary.org/obo/PATO_0001651 -http://purl.obolibrary.org/obo/PATO_0001178 -http://purl.obolibrary.org/obo/PATO_0001711 -http://purl.obolibrary.org/obo/PATO_0001708 +http://purl.obolibrary.org/obo/PATO_0000460 +http://purl.obolibrary.org/obo/PATO_0000068 +http://purl.obolibrary.org/obo/PATO_0001936 +http://purl.obolibrary.org/obo/PATO_0001891 +http://purl.obolibrary.org/obo/PATO_0001884 +http://purl.obolibrary.org/obo/PATO_0001886 +http://purl.obolibrary.org/obo/PATO_0001018 +http://purl.obolibrary.org/obo/PATO_0001414 +http://purl.obolibrary.org/obo/PATO_0002467 http://purl.obolibrary.org/obo/PATO_0001485 http://purl.obolibrary.org/obo/PATO_0002452 -http://purl.obolibrary.org/obo/PATO_0000141 -http://purl.obolibrary.org/obo/PATO_0001881 -http://purl.obolibrary.org/obo/PATO_0000052 +http://purl.obolibrary.org/obo/PATO_0002493 +http://purl.obolibrary.org/obo/PATO_0000133 +http://purl.obolibrary.org/obo/PATO_0002094 +http://purl.obolibrary.org/obo/PATO_0002070 +http://purl.obolibrary.org/obo/PATO_0000586 +http://purl.obolibrary.org/obo/PATO_0000587 +http://purl.obolibrary.org/obo/PATO_0000117 +http://purl.obolibrary.org/obo/PATO_0001488 +http://purl.obolibrary.org/obo/PATO_0001651 +http://purl.obolibrary.org/obo/PATO_0001178 http://purl.obolibrary.org/obo/PATO_0001046 -http://purl.obolibrary.org/obo/PATO_0001372 -http://purl.obolibrary.org/obo/PATO_0001294 -http://purl.obolibrary.org/obo/PATO_0002248 -http://purl.obolibrary.org/obo/PATO_0002249 -http://purl.obolibrary.org/obo/PATO_0002247 +http://purl.obolibrary.org/obo/PATO_0001650 http://purl.obolibrary.org/obo/PATO_0001459 http://purl.obolibrary.org/obo/PATO_0001458 http://purl.obolibrary.org/obo/PATO_0001460 @@ -63,242 +67,245 @@ http://purl.obolibrary.org/obo/PATO_0001154 http://purl.obolibrary.org/obo/PATO_0002364 http://purl.obolibrary.org/obo/PATO_0000051 http://purl.obolibrary.org/obo/PATO_0000319 +http://purl.obolibrary.org/obo/PATO_0000014 +http://purl.obolibrary.org/obo/PATO_0000915 +http://purl.obolibrary.org/obo/PATO_0001708 +http://purl.obolibrary.org/obo/PATO_0001159 http://purl.obolibrary.org/obo/PATO_0001654 http://purl.obolibrary.org/obo/PATO_0001653 http://purl.obolibrary.org/obo/PATO_0001652 -http://purl.obolibrary.org/obo/PATO_0001550 -http://purl.obolibrary.org/obo/PATO_0001549 -http://purl.obolibrary.org/obo/PATO_0000516 -http://purl.obolibrary.org/obo/PATO_0000460 -http://purl.obolibrary.org/obo/PATO_0000068 -http://purl.obolibrary.org/obo/PATO_0001402 -http://purl.obolibrary.org/obo/PATO_0001397 -http://purl.obolibrary.org/obo/PATO_0001749 -http://purl.obolibrary.org/obo/PATO_0001752 -http://purl.obolibrary.org/obo/PATO_0001490 -http://purl.obolibrary.org/obo/PATO_0001751 -http://purl.obolibrary.org/obo/PATO_0000772 -http://purl.obolibrary.org/obo/PATO_0000773 -http://purl.obolibrary.org/obo/PATO_0001623 -http://purl.obolibrary.org/obo/PATO_0000587 -http://purl.obolibrary.org/obo/PATO_0002112 -http://purl.obolibrary.org/obo/PATO_0001821 -http://purl.obolibrary.org/obo/PATO_0002014 -http://purl.obolibrary.org/obo/PATO_0000140 +http://purl.obolibrary.org/obo/PATO_0002324 +http://purl.obolibrary.org/obo/PATO_0002323 +http://purl.obolibrary.org/obo/PATO_0001594 +http://purl.obolibrary.org/obo/PATO_0001857 +http://purl.obolibrary.org/obo/PATO_0001687 +http://purl.obolibrary.org/obo/PATO_0001711 +http://purl.obolibrary.org/obo/PATO_0000136 +http://purl.obolibrary.org/obo/PATO_0000500 +http://purl.obolibrary.org/obo/PATO_0000083 http://purl.obolibrary.org/obo/PATO_0000927 http://purl.obolibrary.org/obo/PATO_0001612 http://purl.obolibrary.org/obo/PATO_0001613 -http://purl.obolibrary.org/obo/PATO_0000133 -http://purl.obolibrary.org/obo/PATO_0001791 -http://purl.obolibrary.org/obo/PATO_0000060 +http://purl.obolibrary.org/obo/PATO_0000573 +http://purl.obolibrary.org/obo/PATO_0000574 +http://purl.obolibrary.org/obo/PATO_0000122 http://purl.obolibrary.org/obo/PATO_0000274 http://purl.obolibrary.org/obo/PATO_0001434 -http://purl.obolibrary.org/obo/PATO_0002397 -http://purl.obolibrary.org/obo/PATO_0002006 +http://purl.obolibrary.org/obo/PATO_0001372 +http://purl.obolibrary.org/obo/PATO_0001294 http://purl.obolibrary.org/obo/PATO_0002328 http://purl.obolibrary.org/obo/PATO_0001475 http://purl.obolibrary.org/obo/PATO_0002326 http://purl.obolibrary.org/obo/PATO_0002327 http://purl.obolibrary.org/obo/PATO_0001476 +http://purl.obolibrary.org/obo/PATO_0000140 http://purl.obolibrary.org/obo/PATO_0001234 -http://purl.obolibrary.org/obo/PATO_0001018 http://purl.obolibrary.org/obo/PATO_0001233 +http://purl.obolibrary.org/obo/PATO_0000119 http://purl.obolibrary.org/obo/PATO_0002136 http://purl.obolibrary.org/obo/PATO_0001291 http://purl.obolibrary.org/obo/PATO_0001995 http://purl.obolibrary.org/obo/PATO_0001043 -http://purl.obolibrary.org/obo/PATO_0000011 -http://purl.obolibrary.org/obo/PATO_0001739 -http://purl.obolibrary.org/obo/PATO_0000463 -http://purl.obolibrary.org/obo/PATO_0000464 -http://purl.obolibrary.org/obo/PATO_0001998 -http://purl.obolibrary.org/obo/PATO_0001304 -http://purl.obolibrary.org/obo/PATO_0002250 -http://purl.obolibrary.org/obo/PATO_0002251 +http://purl.obolibrary.org/obo/PATO_0001961 +http://purl.obolibrary.org/obo/PATO_0002418 +http://purl.obolibrary.org/obo/PATO_0001707 http://purl.obolibrary.org/obo/PATO_0001206 http://purl.obolibrary.org/obo/PATO_0001976 http://purl.obolibrary.org/obo/PATO_0001975 http://purl.obolibrary.org/obo/PATO_0002267 http://purl.obolibrary.org/obo/PATO_0000406 http://purl.obolibrary.org/obo/PATO_0001591 +http://purl.obolibrary.org/obo/PATO_0000279 http://purl.obolibrary.org/obo/PATO_0000694 http://purl.obolibrary.org/obo/PATO_0002325 -http://purl.obolibrary.org/obo/PATO_0000769 -http://purl.obolibrary.org/obo/PATO_0000770 -http://purl.obolibrary.org/obo/PATO_0000188 -http://purl.obolibrary.org/obo/PATO_0000161 -http://purl.obolibrary.org/obo/PATO_0000117 -http://purl.obolibrary.org/obo/PATO_0001195 -http://purl.obolibrary.org/obo/PATO_0000891 -http://purl.obolibrary.org/obo/PATO_0001741 -http://purl.obolibrary.org/obo/PATO_0001740 -http://purl.obolibrary.org/obo/PATO_0002449 -http://purl.obolibrary.org/obo/PATO_0001633 -http://purl.obolibrary.org/obo/PATO_0001775 -http://purl.obolibrary.org/obo/PATO_0001769 -http://purl.obolibrary.org/obo/PATO_0000185 -http://purl.obolibrary.org/obo/PATO_0000186 -http://purl.obolibrary.org/obo/PATO_0001168 -http://purl.obolibrary.org/obo/PATO_0001167 -http://purl.obolibrary.org/obo/PATO_0001020 -http://purl.obolibrary.org/obo/PATO_0002220 -http://purl.obolibrary.org/obo/PATO_0000324 -http://purl.obolibrary.org/obo/PATO_0001451 -http://purl.obolibrary.org/obo/PATO_0001598 +http://purl.obolibrary.org/obo/PATO_0045090 +http://purl.obolibrary.org/obo/PATO_0000039 +http://purl.obolibrary.org/obo/PATO_0001472 +http://purl.obolibrary.org/obo/PATO_0001596 +http://purl.obolibrary.org/obo/PATO_0001595 +http://purl.obolibrary.org/obo/PATO_0002189 +http://purl.obolibrary.org/obo/PATO_0002182 +http://purl.obolibrary.org/obo/PATO_0002200 +http://purl.obolibrary.org/obo/PATO_0002198 +http://purl.obolibrary.org/obo/PATO_0001994 +http://purl.obolibrary.org/obo/PATO_0001992 +http://purl.obolibrary.org/obo/PATO_0000761 +http://purl.obolibrary.org/obo/PATO_0000760 +http://purl.obolibrary.org/obo/PATO_0000374 +http://purl.obolibrary.org/obo/PATO_0000375 +http://purl.obolibrary.org/obo/PATO_0000040 +http://purl.obolibrary.org/obo/PATO_0000982 +http://purl.obolibrary.org/obo/PATO_0000983 +http://purl.obolibrary.org/obo/PATO_0000970 +http://purl.obolibrary.org/obo/PATO_0001759 +http://purl.obolibrary.org/obo/PATO_0000025 +http://purl.obolibrary.org/obo/PATO_0002358 http://purl.obolibrary.org/obo/PATO_0002317 http://purl.obolibrary.org/obo/PATO_0001988 -http://purl.obolibrary.org/obo/PATO_0001857 +http://purl.obolibrary.org/obo/PATO_0001362 +http://purl.obolibrary.org/obo/PATO_0001716 +http://purl.obolibrary.org/obo/PATO_0001662 +http://purl.obolibrary.org/obo/PATO_0001799 http://purl.obolibrary.org/obo/PATO_0001355 http://purl.obolibrary.org/obo/PATO_0002005 +http://purl.obolibrary.org/obo/PATO_0001024 http://purl.obolibrary.org/obo/PATO_0001564 http://purl.obolibrary.org/obo/PATO_0000462 -http://purl.obolibrary.org/obo/PATO_0002486 +http://purl.obolibrary.org/obo/PATO_0001236 +http://purl.obolibrary.org/obo/PATO_0000463 +http://purl.obolibrary.org/obo/PATO_0001998 +http://purl.obolibrary.org/obo/PATO_0000464 +http://purl.obolibrary.org/obo/PATO_0001973 +http://purl.obolibrary.org/obo/PATO_0001500 http://purl.obolibrary.org/obo/PATO_0002321 http://purl.obolibrary.org/obo/PATO_0002318 http://purl.obolibrary.org/obo/PATO_0002322 +http://purl.obolibrary.org/obo/PATO_0002006 +http://purl.obolibrary.org/obo/PATO_0002483 http://purl.obolibrary.org/obo/PATO_0002011 +http://purl.obolibrary.org/obo/PATO_0001845 http://purl.obolibrary.org/obo/PATO_0000078 -http://purl.obolibrary.org/obo/PATO_0002323 +http://purl.obolibrary.org/obo/PATO_0001982 http://purl.obolibrary.org/obo/PATO_0000402 http://purl.obolibrary.org/obo/PATO_0000414 http://purl.obolibrary.org/obo/PATO_0002009 -http://purl.obolibrary.org/obo/PATO_0000586 -http://purl.obolibrary.org/obo/PATO_0002189 -http://purl.obolibrary.org/obo/PATO_0002182 -http://purl.obolibrary.org/obo/PATO_0001699 -http://purl.obolibrary.org/obo/PATO_0001700 -http://purl.obolibrary.org/obo/PATO_0000062 +http://purl.obolibrary.org/obo/PATO_0001781 +http://purl.obolibrary.org/obo/PATO_0001878 http://purl.obolibrary.org/obo/PATO_0002495 http://purl.obolibrary.org/obo/PATO_0002494 -http://purl.obolibrary.org/obo/PATO_0001884 -http://purl.obolibrary.org/obo/PATO_0001886 -http://purl.obolibrary.org/obo/PATO_0002474 -http://purl.obolibrary.org/obo/PATO_0001329 -http://purl.obolibrary.org/obo/PATO_0001908 -http://purl.obolibrary.org/obo/PATO_0002505 +http://purl.obolibrary.org/obo/PATO_0001940 http://purl.obolibrary.org/obo/PATO_0000428 http://purl.obolibrary.org/obo/PATO_0000057 http://purl.obolibrary.org/obo/PATO_0000427 -http://purl.obolibrary.org/obo/PATO_0001963 -http://purl.obolibrary.org/obo/PATO_0000405 +http://purl.obolibrary.org/obo/PATO_0001537 +http://purl.obolibrary.org/obo/PATO_0001538 +http://purl.obolibrary.org/obo/PATO_0001536 +http://purl.obolibrary.org/obo/PATO_0002146 +http://purl.obolibrary.org/obo/PATO_0000331 +http://purl.obolibrary.org/obo/PATO_0000336 +http://purl.obolibrary.org/obo/PATO_0000404 http://purl.obolibrary.org/obo/PATO_0002003 -http://purl.obolibrary.org/obo/PATO_0002275 -http://purl.obolibrary.org/obo/PATO_0001488 -http://purl.obolibrary.org/obo/PATO_0001396 -http://purl.obolibrary.org/obo/PATO_0000125 -http://purl.obolibrary.org/obo/PATO_0000308 -http://purl.obolibrary.org/obo/PATO_0000309 +http://purl.obolibrary.org/obo/PATO_0001448 +http://purl.obolibrary.org/obo/PATO_0001447 +http://purl.obolibrary.org/obo/PATO_0002473 +http://purl.obolibrary.org/obo/PATO_0002430 +http://purl.obolibrary.org/obo/PATO_0000891 +http://purl.obolibrary.org/obo/PATO_0000890 http://purl.obolibrary.org/obo/PATO_0000600 http://purl.obolibrary.org/obo/PATO_0000921 http://purl.obolibrary.org/obo/PATO_0000599 +http://purl.obolibrary.org/obo/PATO_0001333 +http://purl.obolibrary.org/obo/PATO_0002304 http://purl.obolibrary.org/obo/PATO_0001742 +http://purl.obolibrary.org/obo/PATO_0001741 http://purl.obolibrary.org/obo/PATO_0001743 +http://purl.obolibrary.org/obo/PATO_0001740 http://purl.obolibrary.org/obo/PATO_0002301 -http://purl.obolibrary.org/obo/PATO_0001880 -http://purl.obolibrary.org/obo/PATO_0000623 +http://purl.obolibrary.org/obo/PATO_0002154 +http://purl.obolibrary.org/obo/PATO_0001785 http://purl.obolibrary.org/obo/PATO_0001554 http://purl.obolibrary.org/obo/PATO_0001551 http://purl.obolibrary.org/obo/PATO_0001553 http://purl.obolibrary.org/obo/PATO_0001552 -http://purl.obolibrary.org/obo/PATO_0002304 -http://purl.obolibrary.org/obo/PATO_0000404 http://purl.obolibrary.org/obo/PATO_0000415 http://purl.obolibrary.org/obo/PATO_0001794 -http://purl.obolibrary.org/obo/PATO_0001276 -http://purl.obolibrary.org/obo/PATO_0000321 -http://purl.obolibrary.org/obo/PATO_0000122 -http://purl.obolibrary.org/obo/PATO_0001405 -http://purl.obolibrary.org/obo/PATO_0001404 -http://purl.obolibrary.org/obo/PATO_0000322 -http://purl.obolibrary.org/obo/PATO_0002094 -http://purl.obolibrary.org/obo/PATO_0002070 +http://purl.obolibrary.org/obo/PATO_0000763 +http://purl.obolibrary.org/obo/PATO_0002076 http://purl.obolibrary.org/obo/PATO_0045064 http://purl.obolibrary.org/obo/PATO_0001815 http://purl.obolibrary.org/obo/PATO_0045001 http://purl.obolibrary.org/obo/PATO_0001230 -http://purl.obolibrary.org/obo/PATO_0001308 -http://purl.obolibrary.org/obo/PATO_0001307 -http://purl.obolibrary.org/obo/PATO_0001362 -http://purl.obolibrary.org/obo/PATO_0001716 -http://purl.obolibrary.org/obo/PATO_0001662 -http://purl.obolibrary.org/obo/PATO_0002127 -http://purl.obolibrary.org/obo/PATO_0000386 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+http://purl.obolibrary.org/obo/PATO_0002487 +http://purl.obolibrary.org/obo/PATO_0010001 +http://purl.obolibrary.org/obo/PATO_0001461 +http://purl.obolibrary.org/obo/PATO_0040021 +http://purl.obolibrary.org/obo/PATO_0001828 +http://purl.obolibrary.org/obo/PATO_0001758 +http://purl.obolibrary.org/obo/PATO_0001984 +http://purl.obolibrary.org/obo/PATO_0060002 +http://purl.obolibrary.org/obo/PATO_0001405 +http://purl.obolibrary.org/obo/PATO_0040008 +http://purl.obolibrary.org/obo/PATO_0001681 +http://purl.obolibrary.org/obo/PATO_0002371 +http://purl.obolibrary.org/obo/PATO_0002481 +http://purl.obolibrary.org/obo/PATO_0001468 +http://purl.obolibrary.org/obo/PATO_0001473 +http://purl.obolibrary.org/obo/PATO_0001275 +http://purl.obolibrary.org/obo/PATO_0001535 +http://purl.obolibrary.org/obo/PATO_0002406 +http://purl.obolibrary.org/obo/PATO_0001871 +http://purl.obolibrary.org/obo/PATO_0001534 +http://purl.obolibrary.org/obo/PATO_0002095 +http://purl.obolibrary.org/obo/PATO_0002165 +http://purl.obolibrary.org/obo/PATO_0040015 +http://purl.obolibrary.org/obo/PATO_0001809 +http://purl.obolibrary.org/obo/PATO_0002087 +http://purl.obolibrary.org/obo/PATO_0001316 +http://purl.obolibrary.org/obo/PATO_0002311 +http://purl.obolibrary.org/obo/PATO_0000626 +http://purl.obolibrary.org/obo/PATO_0001418 +http://purl.obolibrary.org/obo/PATO_0001388 +http://purl.obolibrary.org/obo/PATO_0001368 +http://purl.obolibrary.org/obo/PATO_0002084 +http://purl.obolibrary.org/obo/PATO_0000442 +http://purl.obolibrary.org/obo/PATO_0001367 +http://purl.obolibrary.org/obo/PATO_0001350 +http://purl.obolibrary.org/obo/PATO_0002426 +http://purl.obolibrary.org/obo/PATO_0002522 +http://purl.obolibrary.org/obo/PATO_0001969 +http://purl.obolibrary.org/obo/PATO_0000638 +http://purl.obolibrary.org/obo/PATO_0002380 +http://purl.obolibrary.org/obo/PATO_0002260 +http://purl.obolibrary.org/obo/PATO_0000647 +http://purl.obolibrary.org/obo/PATO_0001403 http://purl.obolibrary.org/obo/PATO_0002469 -http://purl.obolibrary.org/obo/PATO_0002464 -http://purl.obolibrary.org/obo/PATO_0002499 -http://purl.obolibrary.org/obo/PATO_0001021 -http://purl.obolibrary.org/obo/PATO_0002228 -http://purl.obolibrary.org/obo/PATO_0002315 -http://purl.obolibrary.org/obo/PATO_0002239 -http://purl.obolibrary.org/obo/PATO_0002044 -http://purl.obolibrary.org/obo/PATO_0001370 -http://purl.obolibrary.org/obo/PATO_0000187 -http://purl.obolibrary.org/obo/PATO_0002219 -http://purl.obolibrary.org/obo/PATO_0001649 -http://purl.obolibrary.org/obo/PATO_0001780 -http://purl.obolibrary.org/obo/PATO_0001196 -http://purl.obolibrary.org/obo/PATO_0002479 -http://purl.obolibrary.org/obo/PATO_0002208 -http://purl.obolibrary.org/obo/PATO_0002177 -http://purl.obolibrary.org/obo/PATO_0002453 +http://purl.obolibrary.org/obo/PATO_0040010 +http://purl.obolibrary.org/obo/PATO_0001753 +http://purl.obolibrary.org/obo/PATO_0000629 http://purl.obolibrary.org/obo/PATO_0001249 -http://purl.obolibrary.org/obo/PATO_0002084 +http://purl.obolibrary.org/obo/PATO_0001933 +http://purl.obolibrary.org/obo/PATO_0001630 +http://purl.obolibrary.org/obo/PATO_0002174 +http://purl.obolibrary.org/obo/PATO_0001253 +http://purl.obolibrary.org/obo/PATO_0002272 +http://purl.obolibrary.org/obo/PATO_0000433 +http://purl.obolibrary.org/obo/PATO_0001332 +http://purl.obolibrary.org/obo/PATO_0001907 +http://purl.obolibrary.org/obo/PATO_0002379 +http://purl.obolibrary.org/obo/PATO_0000333 +http://purl.obolibrary.org/obo/PATO_0001668 +http://purl.obolibrary.org/obo/PATO_0002357 +http://purl.obolibrary.org/obo/PATO_0001252 +http://purl.obolibrary.org/obo/PATO_0002210 +http://purl.obolibrary.org/obo/PATO_0002415 +http://purl.obolibrary.org/obo/PATO_0002082 +http://purl.obolibrary.org/obo/PATO_0005007 +http://purl.obolibrary.org/obo/PATO_0001467 +http://purl.obolibrary.org/obo/PATO_0002204 http://purl.obolibrary.org/obo/PATO_0000904 http://purl.obolibrary.org/obo/PATO_0000714 http://purl.obolibrary.org/obo/PATO_0000524 diff --git a/src/ontology/pato-edit.obo b/src/ontology/pato-edit.obo index 456b1d23..3f18fe20 100644 --- a/src/ontology/pato-edit.obo +++ b/src/ontology/pato-edit.obo @@ -20202,7 +20202,7 @@ id: PATO:0040000 name: heterotaxic def: "An oriented quality inhering in a bearer by virtue of the bearer's being abnormally placed or arranged." [http://medical-dictionary.thefreedictionary.com/heterotaxic] is_a: PATO:0000625 ! inverted -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-05-21T22:44:38Z xsd:dateTime [Term] @@ -20211,7 +20211,7 @@ name: ring-shaped def: "Shaped like a ring" [https://orcid.org/0000-0002-6601-2165] synonym: "annular" EXACT [] is_a: PATO:0000947 ! elliptic -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T03:56:53Z xsd:dateTime [Term] @@ -20220,7 +20220,7 @@ name: originates from def: "A positional quality inhering in a bearer by virtue of some aspect of that bearer beginning from a position on another entity." [] subset: relational_slim is_a: PATO:0000140 ! position -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-05-24T04:10:53Z xsd:dateTime [Term] @@ -20228,7 +20228,7 @@ id: PATO:0040003 name: pathogenicity def: "The ability of a pathogen to produce an infectious disease or disorder in an another organism." [https://orcid.org/0000-0001-8941-3984] is_a: PATO:0001995 ! organismal quality -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:24:52Z xsd:dateTime [Term] @@ -20236,7 +20236,7 @@ id: PATO:0040004 name: plush def: "A texture quality inhering in a bearer by virtue of the bearer's being covered or partially covered with hair that has increased thickness and softness." [https://orcid.org/0000-0001-5208-3432, https://orcid.org/0000-0003-4606-0597] is_a: PATO:0000150 ! texture -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-08-02T04:39:30Z xsd:dateTime [Term] @@ -20245,7 +20245,7 @@ name: posteroventral orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed posteroventrally." [https://orcid.org/0000-0003-3162-7490] synonym: "posteroventrally oriented" EXACT [] is_a: PATO:0000133 ! orientation -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T22:54:16Z xsd:dateTime [Term] @@ -20253,7 +20253,7 @@ id: PATO:0040006 name: crown like def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a crown." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:09:59Z xsd:dateTime [Term] @@ -20261,7 +20261,7 @@ id: PATO:0040007 name: shell shaped def: "A shape quality inhering in a bearer by virtue of the bearer's having a shape like a shell." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:12:47Z xsd:dateTime [Term] @@ -20269,7 +20269,7 @@ id: PATO:0040008 name: fringed def: "A shape quality inhering in a bearer by virtue of the bearer's having an ornamental border consisting of short straight or twisted threads or strips hanging from cut or raveled edges or from a separate band." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/fringe] is_a: PATO:0002267 ! edge shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:15:10Z xsd:dateTime [Term] @@ -20277,7 +20277,7 @@ id: PATO:0040009 name: bowl shaped def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of a bowl." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0002008 ! concave 3-D shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:17:01Z xsd:dateTime [Term] @@ -20286,7 +20286,7 @@ name: mobile relative to def: "Mobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] comment: For example, distinct anteroposterior mobility of palatine relative to mesethmoid. is_a: PATO:0000004 ! mobility -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:20:08Z xsd:dateTime [Term] @@ -20295,7 +20295,7 @@ name: immobile relative to def: "Immobility relative to a second entity." [https://orcid.org/0000-0003-3162-7490] comment: For example: distinct anteroposterior immobility of palatine relative to mesethmoid. is_a: PATO:0000004 ! mobility -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:21:07Z xsd:dateTime [Term] @@ -20304,7 +20304,7 @@ name: plug shaped def: "A shape that is in the form of a plug, being tube-like and expanded on one end." [https://orcid.org/0000-0003-3162-7490] synonym: "plug like" EXACT [] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:24:41Z xsd:dateTime [Term] @@ -20313,7 +20313,7 @@ name: dorsomedial orientation def: "An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsomedially." [https://orcid.org/0000-0003-3162-7490] synonym: "dorsomedially directed" EXACT [] is_a: PATO:0000133 ! orientation -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:27:57Z xsd:dateTime [Term] @@ -20325,7 +20325,7 @@ synonym: "band-like" EXACT [] synonym: "strip like" EXACT [] synonym: "strip-like" EXACT [] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:31:51Z xsd:dateTime [Term] @@ -20336,7 +20336,7 @@ synonym: "trough like" EXACT [] synonym: "trough-like" EXACT [] synonym: "trough-shaped" EXACT [] is_a: PATO:0002008 ! concave 3-D shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:35:51Z xsd:dateTime [Term] @@ -20344,7 +20344,7 @@ id: PATO:0040016 name: pentagonal def: "A shape quality inhering in a bearer by virtue of the bearer's having five angles and five sides." [https://orcid.org/0000-0003-3162-7490, https://www.merriam-webster.com/dictionary/pentagonal] is_a: PATO:0002006 ! 2-D shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T18:39:48Z xsd:dateTime [Term] @@ -20353,7 +20353,7 @@ name: dysplastic growth def: "A growth quality of occurrent in which the growth of an organism, structure or group of organisms is abnormal." [https://www.cancer.gov/publications/dictionaries/cancer-terms/def/dysplasia] synonym: "dysgenesis" NARROW [] is_a: PATO:0001433 ! growth quality of occurrent -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T19:01:51Z xsd:dateTime [Term] @@ -20361,7 +20361,7 @@ id: PATO:0040019 name: fibrotic def: "Fibrosis is the formation of excess fibrous connective tissue in an organ or tissue in a reparative or reactive process." [https://en.wikipedia.org/wiki/Fibrosis] is_a: PATO:0000025 ! composition -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-12T23:16:17Z xsd:dateTime [Term] @@ -20369,7 +20369,7 @@ id: PATO:0040020 name: spayed female def: "Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal." [] is_a: PATO:0000383 ! female -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-16T22:52:49Z xsd:dateTime [Term] @@ -20377,14 +20377,14 @@ id: PATO:0040021 name: unpaired def: "The bearer of this quality has_part n=1 of the indicated entity type, where n is bilaterally paired for a comparable organism.." [https://orcid.org/0000-0003-3162-7490] is_a: PATO:0000467 ! present -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040022 name: flared def: "A shape quality inhering in a bearer by virtue of the bearer being expanded laterally and or opened outward in shape." [] is_a: PATO:0000052 ! shape -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:49:07Z xsd:dateTime [Term] @@ -20394,7 +20394,7 @@ def: "An orientation quality inhering in a bearer by virtue of the bearer having synonym: "disto-medial orientation" EXACT [] synonym: "distomedial" EXACT [] is_a: PATO:0000133 ! orientation -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 property_value: http://purl.org/dc/elements/1.1/date 2018-11-19T21:54:33Z xsd:dateTime [Term] @@ -20403,14 +20403,14 @@ name: bilaterally paired def: "The bearer of this quality has_part n=2 of the indicated entity type, where n is unpaired for a comparable organism." [https://orcid.org/0000-0003-3162-7490] synonym: "paired" BROAD [] is_a: PATO:0000467 ! present -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040025 name: lesioned def: "A structural quality which is held by a bearer where a localized pathological or traumatic structural change, damage, deformity, or discontinuity of tissue, organ, or body part is present." [NCIT:C3824] is_a: PATO:0000141 ! structure -property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0001-5208-3432 +created_by: http://orcid.org/0000-0001-5208-3432 [Term] id: PATO:0040026 diff --git a/src/ontology/pato.Makefile b/src/ontology/pato.Makefile index fb199d14..8455c39d 100644 --- a/src/ontology/pato.Makefile +++ b/src/ontology/pato.Makefile @@ -14,9 +14,9 @@ $(ONT).obo: $(ONT)-simple.owl #pato-edit-donotedit.owl: # $(ROBOT) convert -i $(SRC) -f owl -o $@ -#pato-edit-donotedit.obo: pato-edit-donotedit.owl -# $(ROBOT) merge --input $< \ -# convert -f obo --check false -o $@ +x: + $(ROBOT) merge --input $(ONT)-simple.owl \ + convert -f obo --check false -o ../../pato.obo #t: pato-edit-donotedit.owl # $(ROBOT) merge -i pato-edit-donotedit.owl \ diff --git a/src/ontology/simple_seed.txt b/src/ontology/simple_seed.txt index f630e48c..27424818 100644 --- a/src/ontology/simple_seed.txt +++ b/src/ontology/simple_seed.txt @@ -1,6 +1,9 @@ cls http://purl.obolibrary.org/obo/BFO_0000050 http://purl.obolibrary.org/obo/BFO_0000051 +http://purl.obolibrary.org/obo/IAO_0000115 +http://purl.obolibrary.org/obo/IAO_0000231 +http://purl.obolibrary.org/obo/IAO_0100001 http://purl.obolibrary.org/obo/PATO_0000000 http://purl.obolibrary.org/obo/PATO_0000001 http://purl.obolibrary.org/obo/PATO_0000002 @@ -2751,6 +2754,11 @@ http://purl.obolibrary.org/obo/PATO_0055002 http://purl.obolibrary.org/obo/PATO_0060001 http://purl.obolibrary.org/obo/PATO_0060002 http://purl.obolibrary.org/obo/PATO_0060003 +http://purl.obolibrary.org/obo/RO_0000053 +http://purl.obolibrary.org/obo/RO_0000057 +http://purl.obolibrary.org/obo/RO_0002180 +http://purl.obolibrary.org/obo/RO_0002473 +http://purl.obolibrary.org/obo/RO_0002604 http://purl.obolibrary.org/obo/pato#abnormal_slim http://purl.obolibrary.org/obo/pato#absent_slim http://purl.obolibrary.org/obo/pato#attribute_slim @@ -2782,6 +2790,31 @@ http://purl.obolibrary.org/obo/pato#similar_in_magnitude_relative_to http://purl.obolibrary.org/obo/pato#singly_occurring_form_of http://purl.obolibrary.org/obo/pato#towards http://purl.obolibrary.org/obo/pato#value_slim +http://purl.org/dc/elements/1.1/date +http://www.geneontology.org/formats/oboInOwl#SubsetProperty +http://www.geneontology.org/formats/oboInOwl#auto-generated-by +http://www.geneontology.org/formats/oboInOwl#consider +http://www.geneontology.org/formats/oboInOwl#created_by +http://www.geneontology.org/formats/oboInOwl#creation_date +http://www.geneontology.org/formats/oboInOwl#date +http://www.geneontology.org/formats/oboInOwl#default-namespace +http://www.geneontology.org/formats/oboInOwl#hasAlternativeId +http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym +http://www.geneontology.org/formats/oboInOwl#hasDbXref +http://www.geneontology.org/formats/oboInOwl#hasExactSynonym +http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym +http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion +http://www.geneontology.org/formats/oboInOwl#hasOBONamespace +http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym +http://www.geneontology.org/formats/oboInOwl#id +http://www.geneontology.org/formats/oboInOwl#inSubset +http://www.geneontology.org/formats/oboInOwl#is_class_level +http://www.geneontology.org/formats/oboInOwl#is_metadata_tag +http://www.geneontology.org/formats/oboInOwl#saved-by +http://www.geneontology.org/formats/oboInOwl#shorthand +http://www.w3.org/2000/01/rdf-schema#comment +http://www.w3.org/2000/01/rdf-schema#label +http://www.w3.org/2002/07/owl#deprecated term http://www.geneontology.org/formats/oboInOwl#SubsetProperty http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty diff --git a/src/sparql/simple-seed.sparql b/src/sparql/simple-seed.sparql index e62d2167..63e1cb5b 100644 --- a/src/sparql/simple-seed.sparql +++ b/src/sparql/simple-seed.sparql @@ -5,6 +5,8 @@ SELECT DISTINCT ?cls WHERE { {?cls a owl:ObjectProperty .} UNION + {?cls a owl:AnnotationProperty .} + UNION {?x ?cls} UNION {?x ?cls}